Citrus Sinensis ID: 030624

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MMGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKVCF
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEEccccccHHHHHHHHHccccccccccccccccEEEEEEEEEEccEEEEEEEcccccccccccHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHcHHHHccEEEEEEcccccccccccHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHccccccccEEEEEEEccccccccccccHccccHEHcccccccccHHHHHcccccccccEEEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHcEEEEEEEccHHHccccccHHHHHHccccHHHHHHc
Coil and Loop (DISEMBL)
mmggsaidddweltspsngerTVVLVGrtgngksatgnsilgrrafksrasssgvtstCEMQRTvlkdgqvvnvidtpglfdfsagsefvGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTggdeledndeTLEDylgrecpkplkvcf
Flexible Loop (DISEMBL)
mmggsaidddweltspsngertvvlvgrtgngksatgnsilgrrafksrasssgvtstcemqrtvlkdgqvvNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEdylgrecpkplkvcf
Low Complexity Region (SEG)
MMGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLvvfsvrsrfsQEEEAALHSLQTLFGKKIFDYMIVVFtggdeledndetledYLGRECPKPLKVCF
Disordered region (IsUnstruct)
**********************************************************CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL*********Y*************
Disordered Region (DISOPRED)
**********************VVLVGRTGNGKSATGNSILGRRAFKS***********EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKVCF
Disordered Region (DISEMBL)
********DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF*************EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKVCF
Disordered Region (DISPRO)
******************GERTVVLVGRTGNGKSAT******RRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKVCF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKVCF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
P54120	353	Protein AIG1 OS=Arabidops	no	no	0.931	0.458	0.601	1e-50
O81025	463	Putative protein PHLOEM P	no	no	0.879	0.330	0.528	3e-45
Q9NUV9	329	GTPase IMAP family member	yes	no	0.867	0.458	0.410	3e-28
Q8K3K9	310	GTPase IMAP family member	no	no	0.781	0.438	0.407	2e-22
Q8K349	305	GTPase IMAP family member	no	no	0.827	0.472	0.426	7e-22
Q99JY3	219	GTPase IMAP family member	no	no	0.810	0.643	0.383	2e-21
Q8NHV1	300	GTPase IMAP family member	no	no	0.735	0.426	0.392	2e-20
Q5FVN6	304	GTPase IMAP family member	no	no	0.770	0.440	0.421	4e-20
Q75N62	688	GTPase IMAP family member	no	no	0.833	0.210	0.389	4e-19
Q4KLG2	688	GTPase IMAP family member	no	no	0.844	0.213	0.407	8e-19

>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1

 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 98/163 (60%), Positives = 119/163 (73%), Gaps = 1/163 (0%)

Query: 9   DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD 68
           D++  + P   E  +VLVGRTGNGKSATGNSI+  + FKS+  SSGVT  C   + V  +
Sbjct: 32  DEFSASQPHPVE-NIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPE 90

Query: 69  GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS 128
           G ++NVIDTPGLFD S  +EF+GKEIVKC+ +A  G+HAVL+V SVR+R SQEEE  L +
Sbjct: 91  GPILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLST 150

Query: 129 LQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171
           LQ LFG KI DY+IVVFTGGD LED+  TLEDYLG   P  LK
Sbjct: 151 LQVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLK 193

Arabidopsis thaliana (taxid: 3702)

>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1

 Score =  180 bits (457), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 83/157 (52%), Positives = 116/157 (73%), Gaps = 4/157 (2%)

Query: 21  RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 80
           + +VLVGRTGNGKS+TGN++LG + FKS+  + GVT  CEM R  ++DG ++NVIDTPGL
Sbjct: 6   KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query: 81  FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 140
            D     + +  EI+ C+ MA++GIHAVL+V S R R S+EEE+ +++LQ +FG +I DY
Sbjct: 66  CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query: 141 MIVVFTGGDELEDNDETLEDYLGRECP----KPLKVC 173
            IVVFTGGD+LE++D+TL+DY    CP    K L++C
Sbjct: 126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLC 162

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1

 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 100/156 (64%), Gaps = 5/156 (3%)

Query: 16  PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI 75
           P N +  +VLVG+TG GKSATGNSILGR+ F S  ++  +T  CE + +  K+ ++V V+
Sbjct: 26  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 84

Query: 76  DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK 135
           DTPG+FD    +    KEI++CI +   G HA+L+V  +  R+++EE  A   +  +FG+
Sbjct: 85  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGE 143

Query: 136 KIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171
           +   +MI++FT  D+L D +  L DYL RE P+ ++
Sbjct: 144 RARSFMILIFTRKDDLGDTN--LHDYL-REAPEDIQ 176

May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Homo sapiens (taxid: 9606)

>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/140 (40%), Positives = 86/140 (61%), Gaps = 4/140 (2%)

Query: 23  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 82
           +VL+G+TG GKS+TGNSILGR+AF S   +  +T  CE   ++  DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCEKGVSIW-DGKELVVVDTPGIFD 91

Query: 83  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 142
                    KEI +C+ +   G HA+L+V  +   ++ EE  A   L ++F KK   +MI
Sbjct: 92  TEVPDADTQKEITRCVALTSPGPHALLLVIPLGC-YTVEEHKATRKLLSMFEKKARRFMI 150

Query: 143 VVFTGGDELEDNDETLEDYL 162
           ++ T  D+LED D  + +YL
Sbjct: 151 LLLTRKDDLEDTD--IHEYL 168

May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Rattus norvegicus (taxid: 10116)

>sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1

 Score =  103 bits (256), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 94/150 (62%), Gaps = 6/150 (4%)

Query: 23  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 82
           ++LVG+TG+GKSATGNSILGR+AF+S+ S+  VT+T + + T   +G+ + VIDTP +F 
Sbjct: 106 LLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQ-KGTREFEGKELEVIDTPDIFS 164

Query: 83  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 142
                E   K+I  C  +A  G HAVL+V  V  R++ E++A    LQ +FG  I  Y I
Sbjct: 165 PQNQPEATAKKI--CDLLASPGPHAVLLVIQV-GRYTAEDQAVARCLQEIFGNTILAYTI 221

Query: 143 VVFTGGDELEDNDETLEDYLGRECPKPLKV 172
           +VFT  ++L +   +LE+Y+     K L V
Sbjct: 222 LVFTRKEDLAEG--SLEEYIQENNNKSLDV 249

Mus musculus (taxid: 10090)

>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 87/146 (59%), Gaps = 5/146 (3%)

Query: 23  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 82
           +VL+G+TG GKS+TGNSILG + F S   +  +T  CE +R    DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCE-KRVSTWDGKELVVVDTPGIFD 91

Query: 83  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 142
                    +EI + + +   G HA+L+V  +  R++ EE  A   +  +FGK+   +MI
Sbjct: 92  TEVPDADTQREITRYVALTSPGPHALLLVVPL-GRYTVEEHKATQKILDMFGKQARRFMI 150

Query: 143 VVFTGGDELEDNDETLEDYLGRECPK 168
           ++ T  D+LED D  + +YL +  PK
Sbjct: 151 LLLTRKDDLEDTD--IHEYLEK-APK 173

Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium (By similarity). May play a role in regulating lymphocyte apoptosis.

Mus musculus (taxid: 10090)

>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 82/130 (63%), Gaps = 2/130 (1%)

Query: 23  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 82
           +VLVG+TG+GKSAT N+ILG   F SR ++  VT  C+      + G+ + V+DTPGLFD
Sbjct: 11  IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQ-GRDLLVVDTPGLFD 69

Query: 83  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 142
                +   KEI +CI  +  G HA+++V  +  R+++EE+  +  ++ +FGK    +M+
Sbjct: 70  TKESLDTTCKEISRCIISSCPGPHAIVLVL-LLGRYTEEEQKTVALIKAVFGKSAMKHMV 128

Query: 143 VVFTGGDELE 152
           ++FT  +ELE
Sbjct: 129 ILFTRKEELE 138

Homo sapiens (taxid: 9606)

>sp|Q5FVN6|GIMA6_RAT GTPase IMAP family member 6 OS=Rattus norvegicus GN=Gimap6 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 86/140 (61%), Gaps = 6/140 (4%)

Query: 23  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 82
           ++LVG+TG+GKSATGNSILGR+ F+S+ S+  VT   +     L +G+ + VIDTP +  
Sbjct: 105 LLLVGKTGSGKSATGNSILGRQVFESKISARPVTMAFQKGSREL-EGKELEVIDTPDILS 163

Query: 83  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI 142
                E   K+I  C  +A  G HAVL+V  V  R++ E++ A   LQ +FG  I  Y I
Sbjct: 164 PQNQPEATAKKI--CDILASPGPHAVLLVIQV-GRYTTEDQEAARCLQEIFGNGILAYTI 220

Query: 143 VVFTGGDELEDNDETLEDYL 162
           +VFT  +EL +   +LE+Y+
Sbjct: 221 LVFTRKEELAEG--SLEEYI 238

Rattus norvegicus (taxid: 10116)

>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 91/154 (59%), Gaps = 9/154 (5%)

Query: 22  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 81
            ++L+GR+G GKSATGN+ILGR AF S+  +  VTS+ +  +  L D Q V V+DTP  F
Sbjct: 477 NIILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTL-DWQDVVVVDTPS-F 534

Query: 82  DFSAGSE----FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI 137
             + G+E     + +EI  C+ + ++G+   ++V  +  RF+QE+E  +  L+  F + I
Sbjct: 535 IQTPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQL-GRFTQEDEVVVEQLEASFEENI 593

Query: 138 FDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171
             YMIV+FT  ++L D D  L DY      K LK
Sbjct: 594 MKYMIVLFTRKEDLGDGD--LHDYTNNTKNKALK 625

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Mus musculus (taxid: 10090)

>sp|Q4KLG2|GIMA8_RAT GTPase IMAP family member 8 OS=Rattus norvegicus GN=Gimap8 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 93/157 (59%), Gaps = 10/157 (6%)

Query: 23  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 82
           ++L+GR+G GKSATGN+ILGR AF S+  +  VTS  +  R  L D Q + V+DTP L  
Sbjct: 477 IILLGRSGVGKSATGNTILGRPAFVSQLRAQPVTSRSQSGRRTL-DWQDIVVVDTPSLNQ 535

Query: 83  FSAGSE----FVGKEIVKC-IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI 137
            S G+E     + KEI +C +   ++G+   ++VF +  RF+QE+EA +  L+  F + I
Sbjct: 536 MS-GTEKNPAQLKKEIKQCLLQNCEEGMKVFVLVFQL-GRFTQEDEAVVEQLEASFEENI 593

Query: 138 FDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKVCF 174
             YMIV+FT  ++L D D  L D+      K LK  F
Sbjct: 594 MKYMIVLFTRKEDLGDGD--LYDFTNNTKNKVLKRIF 628

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
255539412	339	aig1, putative [Ricinus communis] gi|223	0.977	0.501	0.905	6e-88
224146305	335	predicted protein [Populus trichocarpa]	0.977	0.507	0.894	4e-87
296089429	345	unnamed protein product [Vitis vinifera]	0.977	0.492	0.858	2e-84
225460273	340	PREDICTED: protein AIG1 [Vitis vinifera]	0.977	0.5	0.858	2e-84
147836179	566	hypothetical protein VITISV_037325 [Viti	0.977	0.300	0.852	6e-82
224136037	259	predicted protein [Populus trichocarpa]	0.902	0.606	0.904	2e-78
363814318	336	uncharacterized protein LOC100807910 [Gl	0.977	0.505	0.811	2e-76
356526433	350	PREDICTED: protein AIG1-like [Glycine ma	0.954	0.474	0.819	7e-76
4097585	344	NTGP4, partial [Nicotiana tabacum]	0.965	0.488	0.764	6e-73
449464872	341	PREDICTED: protein AIG1-like [Cucumis sa	0.977	0.498	0.821	1e-69

>gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis]

 Score =  328 bits (840), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 154/170 (90%), Positives = 164/170 (96%)

Query: 2   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 61
           MGGSAIDDDWELTSPSNG RTVVLVGRTGNGKSATGNS+LGR+AFKSRASSSGVTSTCE+
Sbjct: 1   MGGSAIDDDWELTSPSNGVRTVVLVGRTGNGKSATGNSLLGRKAFKSRASSSGVTSTCEL 60

Query: 62  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 121
           Q+TV+ DGQV+NV+DTPGLFDFSA SEFVGKEIVKCI MAKDGIHAVLVVFSVR+RFSQE
Sbjct: 61  QQTVITDGQVINVVDTPGLFDFSAESEFVGKEIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 122 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171
           EEAAL SLQTLFG KIFDYMIVVFTGGDELEDNDETLEDYLGRECP+PL+
Sbjct: 121 EEAALRSLQTLFGSKIFDYMIVVFTGGDELEDNDETLEDYLGRECPQPLQ 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa]

 Score =  325 bits (833), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 152/170 (89%), Positives = 163/170 (95%)

Query: 2   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 61
           MGGSA+DDDWE  SPSNG RT+VLVGRTGNGKSATGNSILGR+AFKSRASSSGVTS+CE+
Sbjct: 1   MGGSAMDDDWEFASPSNGVRTIVLVGRTGNGKSATGNSILGRKAFKSRASSSGVTSSCEL 60

Query: 62  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 121
           QRTVL+DGQ++NVIDTPGLFDFSAGSEFVG+EIVKCI MAKDGIHAVLVVFSVR+RFSQE
Sbjct: 61  QRTVLRDGQIINVIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 122 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171
           EEAAL SLQTLFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLK
Sbjct: 121 EEAALRSLQTLFGSKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLK 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera]

 Score =  317 bits (811), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 146/170 (85%), Positives = 163/170 (95%)

Query: 2   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 61
           MGGS+IDD+WE T+PS+G RT+VLVGRTGNGKSATGNSILGR++FKSRASSSGVTSTCE+
Sbjct: 6   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 65

Query: 62  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 121
           QRT+L+DGQ+VNVIDTPGLFD SA S+FVGKEIVKCI +AKDG+HAVLVVFSVR+RFS+E
Sbjct: 66  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 125

Query: 122 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171
           EEAALHSLQTLFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLK
Sbjct: 126 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLK 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera]

 Score =  316 bits (810), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 146/170 (85%), Positives = 163/170 (95%)

Query: 2   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 61
           MGGS+IDD+WE T+PS+G RT+VLVGRTGNGKSATGNSILGR++FKSRASSSGVTSTCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 62  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 121
           QRT+L+DGQ+VNVIDTPGLFD SA S+FVGKEIVKCI +AKDG+HAVLVVFSVR+RFS+E
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120

Query: 122 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171
           EEAALHSLQTLFG KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLK
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDETLEDYLGRECPEPLK 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147836179|emb|CAN68778.1| hypothetical protein VITISV_037325 [Vitis vinifera]

 Score =  308 bits (788), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 145/170 (85%), Positives = 162/170 (95%)

Query: 2   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 61
           MGGS+IDD+WE T+PS+G RT+VLVGRTGNGKSATGNSILGR++FKSRASSSGVTSTCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 62  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 121
           QRT+L+DGQ+VNVIDTPGLFD SA S+FVGKEIVKCI +AKDG+HAVLVVFSVR+RFS+E
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120

Query: 122 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171
           EEAALHSLQTLFG KI DYMIVVFTGGDELEDNDE LEDYLGRECP+PLK
Sbjct: 121 EEAALHSLQTLFGSKIIDYMIVVFTGGDELEDNDEXLEDYLGRECPEPLK 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136037|ref|XP_002327365.1| predicted protein [Populus trichocarpa] gi|222835735|gb|EEE74170.1| predicted protein [Populus trichocarpa]

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 142/157 (90%), Positives = 150/157 (95%)

Query: 15  SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNV 74
           SPSNG RTVVLVGRTGNGKSATGNSILG++AFKSRASSSGVTSTCE+Q TVL DGQ++NV
Sbjct: 2   SPSNGVRTVVLVGRTGNGKSATGNSILGKKAFKSRASSSGVTSTCELQSTVLGDGQIINV 61

Query: 75  IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG 134
           IDTPGLFDFSAGSEFVG+EIVKCI MAKDGIHAVLVVFSVR+RFSQEEEAAL SLQTLFG
Sbjct: 62  IDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQEEEAALRSLQTLFG 121

Query: 135 KKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171
            KI DYMIVVFTGGDELEDNDETLEDYLGRECP+PLK
Sbjct: 122 SKILDYMIVVFTGGDELEDNDETLEDYLGRECPQPLK 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max]

 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/170 (81%), Positives = 153/170 (90%)

Query: 2   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 61
           MGGS+I DDWELTS SN  RTVVLVGRTGNGKSATGN+ILGR+ FKSRASSS V+++CE+
Sbjct: 1   MGGSSIGDDWELTSSSNEGRTVVLVGRTGNGKSATGNTILGRKVFKSRASSSAVSTSCEL 60

Query: 62  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 121
           Q T L DGQ+VNVIDTPGLFD S GSEFVGKEIVKCI +AKDGIHAV+VVFSVR+RF++E
Sbjct: 61  QTTELNDGQIVNVIDTPGLFDLSVGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEE 120

Query: 122 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171
           EE AL SLQTLFG KI DYMIVVFTGGDELE+N ETLEDYLGRECP+PLK
Sbjct: 121 EETALRSLQTLFGSKIVDYMIVVFTGGDELEENAETLEDYLGRECPEPLK 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max]

 Score =  288 bits (736), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 136/166 (81%), Positives = 153/166 (92%)

Query: 6   AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV 65
           +IDDDWELTS SN  RTVVLVGRTGNGKSATGN+ILGR+AFKSRASSS V+++CE++ T 
Sbjct: 19  SIDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTE 78

Query: 66  LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA 125
           L +GQ+VNVIDTPGLFD SAGSEFVGKEIVKCI +AKDGIHAV+VVFSVR+RF++EEE A
Sbjct: 79  LNNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETA 138

Query: 126 LHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171
           L SLQTLFG KI DYMIVVFTGGDELE+NDETLEDYLGRECP+PLK
Sbjct: 139 LRSLQTLFGSKIVDYMIVVFTGGDELEENDETLEDYLGRECPEPLK 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4097585|gb|AAD09518.1| NTGP4, partial [Nicotiana tabacum]

 Score =  278 bits (711), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 130/170 (76%), Positives = 153/170 (90%), Gaps = 2/170 (1%)

Query: 2   MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 61
           MGGSAI DDWE  +  NG RT+VLVGRTGNGKSATGNSILGR+AF+S +SS+GVTSTCE+
Sbjct: 6   MGGSAISDDWEFAA--NGARTLVLVGRTGNGKSATGNSILGRKAFRSMSSSAGVTSTCEL 63

Query: 62  QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 121
           QRTVL+DGQ+++VIDTPGLFDFSA  EF+G EIVKCI MAKDGIHAVLVV SVR+RFS+E
Sbjct: 64  QRTVLEDGQILDVIDTPGLFDFSAEPEFIGNEIVKCINMAKDGIHAVLVVLSVRTRFSRE 123

Query: 122 EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171
           E+AA+ SL+  FG KI DYM++VFTGGD+LEDN+ETLEDYLGR+CP+PLK
Sbjct: 124 EQAAVQSLREFFGGKISDYMVLVFTGGDDLEDNEETLEDYLGRDCPEPLK 173

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464872|ref|XP_004150153.1| PREDICTED: protein AIG1-like [Cucumis sativus] gi|449520867|ref|XP_004167454.1| PREDICTED: protein AIG1-like [Cucumis sativus]

 Score =  267 bits (683), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 143/174 (82%), Positives = 156/174 (89%), Gaps = 4/174 (2%)

Query: 2   MGGSAIDDDWEL--TSPSNGE--RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS 57
           MGGSAI++DWEL  TSP+NG   RTVVLVGRTGNGKSATGNSILGR+AFKSRA SSGVT 
Sbjct: 1   MGGSAIEEDWELDLTSPTNGRSARTVVLVGRTGNGKSATGNSILGRKAFKSRACSSGVTV 60

Query: 58  TCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR 117
           T E+Q TVL DGQ ++VIDTPG+FDFSAGS+FVGKEIVKCI MAKDGIHAVLVVFSVR+R
Sbjct: 61  TSELQTTVLSDGQEIDVIDTPGMFDFSAGSDFVGKEIVKCIDMAKDGIHAVLVVFSVRTR 120

Query: 118 FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171
           FS EEEAAL SLQTLFG KI +YMIVVFTGGDELE+N+ETLEDYLGR CP PLK
Sbjct: 121 FSLEEEAALRSLQTLFGSKIVNYMIVVFTGGDELEENEETLEDYLGRSCPDPLK 174

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2009041	342	AT1G33970 [Arabidopsis thalian	0.971	0.494	0.570	2.6e-47
TAIR|locus:2203832	336	AT1G33930 [Arabidopsis thalian	0.936	0.485	0.509	9.9e-39
TAIR|locus:2203817	311	AT1G33950 [Arabidopsis thalian	0.890	0.498	0.496	3e-37
TAIR|locus:2203807	353	AIG1 "AVRRPT2-INDUCED GENE 1"	0.931	0.458	0.496	4.4e-36
TAIR|locus:2140558	394	AT4G09940 [Arabidopsis thalian	0.816	0.360	0.528	1.2e-35
TAIR|locus:2203797	326	AT1G33900 [Arabidopsis thalian	0.959	0.512	0.431	8.3e-35
TAIR|locus:2203802	334	AT1G33890 [Arabidopsis thalian	0.919	0.479	0.443	4.1e-33
TAIR|locus:2039528	463	PP2-A3 "phloem protein 2-A3" [	0.879	0.330	0.433	1.3e-31
TAIR|locus:2140568	336	AT4G09950 [Arabidopsis thalian	0.764	0.395	0.482	3.8e-30
TAIR|locus:2203792	301	AT1G33910 [Arabidopsis thalian	0.862	0.498	0.436	3.4e-29

TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 97/170 (57%), Positives = 118/170 (69%)

Query:     2 MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM 61
             MGG  ++DDWE  S SN +RT+VLVGRTGNGKSATGNSILGR+AF+SRA + GVTSTCE 
Sbjct:     6 MGGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSILGRKAFRSRARTVGVTSTCES 65

Query:    62 QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQE 121
             QR V +DG ++NV+DTPGLFD S  ++F+GKEIV+CI +A+DGIHA+L          +E
Sbjct:    66 QRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISLAEDGIHAILLVFSVRRLA-EE 124

Query:   122 EEAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK 171
             E+  L  LQ LFG KI DYMIVVF               YL   CP+ LK
Sbjct:   125 EQTVLSFLQALFGSKIADYMIVVFTGGDELEENEETLEEYLADYCPEFLK 174

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 83/163 (50%), Positives = 105/163 (64%)

Query:     9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD 68
             D WEL S S   + VVLVGRTGNGKSATGNSI+GR+ F+S+  + GVT+ C+  R V  D
Sbjct:    24 DRWELPSASEPVKNVVLVGRTGNGKSATGNSIIGRKVFESKYQAVGVTTRCKTFRAVTPD 83

Query:    69 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHS 128
             G ++NVIDTPGLFD +  +EF+ KEIV C+ +A++G+HAV+          QEEE AL +
Sbjct:    84 GPIINVIDTPGLFDLAVSAEFISKEIVNCLILAREGLHAVVLVLSLSTRISQEEENALCT 143

Query:   129 LQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK 171
             LQ LFG KI DY+IVVF               YL   CP+ LK
Sbjct:   144 LQMLFGGKIVDYLIVVFTCGDMLEDRNMTLEDYLSNGCPEFLK 186

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 77/155 (49%), Positives = 99/155 (63%)

Query:    17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 76
             S     +VLVGRTGNGKSATGNS++G++ F S+A +SGVT  C+    V KDG  +NVID
Sbjct:    13 SKQAENIVLVGRTGNGKSATGNSLIGKKVFASKAHASGVTMKCQTHGVVTKDGHKINVID 72

Query:    77 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 136
             TPGLFD S  +E++ KEIV+C+ +A+ GIHAVL          QEEE  L +LQ LFG +
Sbjct:    73 TPGLFDLSVSAEYISKEIVRCLTLAEGGIHAVLLVLSARTRITQEEENTLRTLQALFGSQ 132

Query:   137 IFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK 171
             I DY++VVF               YLGR+CP  +K
Sbjct:   133 ILDYVVVVFTGGDVLEECKETLEDYLGRDCPTFIK 167

GO:0005525 "GTP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 81/163 (49%), Positives = 99/163 (60%)

Query:     9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD 68
             D++  + P   E  +VLVGRTGNGKSATGNSI+  + FKS+  SSGVT  C   + V  +
Sbjct:    32 DEFSASQPHPVEN-IVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPE 90

Query:    69 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHS 128
             G ++NVIDTPGLFD S  +EF+GKEIVKC+ +A  G+HAVL          QEEE  L +
Sbjct:    91 GPILNVIDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLST 150

Query:   129 LQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK 171
             LQ LFG KI DY+IVVF               YLG   P  LK
Sbjct:   151 LQVLFGSKIVDYLIVVFTGGDVLEDDGMTLEDYLGDNMPDFLK 193

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=IEP;ISS

GO:0006897 "endocytosis" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2140558 AT4G09940 [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 75/142 (52%), Positives = 101/142 (71%)

Query:     4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR 63
             GS ++   +L       RT++LVGR+GNGKSATGNSILGR+AFKS+  +SGVT+ CE+Q 
Sbjct:    31 GSGLEVTCDLRLEHKPARTLLLVGRSGNGKSATGNSILGRKAFKSKGRASGVTTACELQS 90

Query:    64 TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEE 123
             + L +GQ++NVIDTPGLF  S  +EF  +EI++C  + K+GI AVL          +EE+
Sbjct:    91 STLPNGQIINVIDTPGLFSLSPSTEFTCREILRCFSLTKEGIDAVLLVFSLKNRLTEEEK 150

Query:   124 AALHSLQTLFGKKIFDYMIVVF 145
             +AL +L+ LFG KI DYMIVVF
Sbjct:   151 SALFALKILFGSKIVDYMIVVF 172

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 73/169 (43%), Positives = 106/169 (62%)

Query:     5 SAIDDDWELTSPSNGE--RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ 62
             + ++D  +L  PS  E  + +VLVGRTGNGKSATGNS++G++ F+S   ++GVT  CE  
Sbjct:     2 AGLEDTTDLRLPSASEPIKNIVLVGRTGNGKSATGNSLIGKQVFRSETRATGVTMKCETC 61

Query:    63 RTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEE 122
               V   G  +NVIDTPGLFD S  +E++ +EI+ C+ +A+DG+HAV+          QEE
Sbjct:    62 VAVTPCGTGINVIDTPGLFDLSVSAEYLSQEIINCLVLAEDGLHAVVLVLSVRTRISQEE 121

Query:   123 EAALHSLQTLFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK 171
             EA L++LQ +FG +I DY++V+F               YL + CP+ LK
Sbjct:   122 EATLNTLQVIFGSQIIDYLVVLFTGGDELEANNMTLDDYLSKGCPEFLK 170

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203802 AT1G33890 [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 71/160 (44%), Positives = 94/160 (58%)

Query:    12 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV 71
             E  S     + +VLVGRTGNGKSATGNS++G+  F S A ++GVT TC+  + V   G  
Sbjct:     5 EQASAYKAVKNIVLVGRTGNGKSATGNSLIGKDVFVSEAKATGVTKTCQTYKAVTPGGSR 64

Query:    72 VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQT 131
             +NVIDTPGLFD S  +EF+ KEI+ C+ +A+ G+H V+          QEEE  L +LQ 
Sbjct:    65 INVIDTPGLFDLSVSAEFISKEIINCLRLAEGGLHVVVLVLSVRTRITQEEENTLSTLQV 124

Query:   132 LFGKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK 171
             LFG +I DY+IV+F               Y  + CP  LK
Sbjct:   125 LFGNEILDYLIVLFTGGDELEANNQTLDDYFHQGCPYFLK 164

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2039528 PP2-A3 "phloem protein 2-A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 68/157 (43%), Positives = 95/157 (60%)

Query:    21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 80
             + +VLVGRTGNGKS+TGN++LG + FKS+  + GVT  CEM R  ++DG ++NVIDTPGL
Sbjct:     6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query:    81 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFDY 140
              D     + +  EI+ C+ MA++GIHAVL          +EEE+ +++LQ +FG +I DY
Sbjct:    66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125

Query:   141 MIVVFXXXXXXXXXXXXXXXYLGRECP----KPLKVC 173
              IVVF               Y    CP    K L++C
Sbjct:   126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFLTKVLRLC 162

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0006897 "endocytosis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2140568 AT4G09950 [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 67/139 (48%), Positives = 97/139 (69%)

Query:     7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL 66
             +++DW+   P   ERT+VL+GRTGNGKSATGNSILG+  F+S+A    +T  C++ ++ L
Sbjct:    10 VENDWK---P---ERTLVLLGRTGNGKSATGNSILGKTMFQSKARGKFITKECKLHKSKL 63

Query:    67 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAAL 126
              +G  +NVIDTPGLF  S+ ++F  +EIV+C+ +AK GI AVL          +EE++ L
Sbjct:    64 PNGLTINVIDTPGLFSASSTTDFTIREIVRCLLLAKGGIDAVLLVFSLRNRLTEEEQSTL 123

Query:   127 HSLQTLFGKKIFDYMIVVF 145
              +L+ LFG +I DY+IVVF
Sbjct:   124 RTLKILFGSQIVDYIIVVF 142

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203792 AT1G33910 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 69/158 (43%), Positives = 94/158 (59%)

Query:    16 PSNGE--RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVN 73
             PS  E  R +VLVG TGNGKS+TGNS++G+  F           TC+  +T+  DGQ++N
Sbjct:     7 PSASEPVRNIVLVGPTGNGKSSTGNSLIGKEVFILETVEC---KTCKA-KTL--DGQIIN 60

Query:    74 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLF 133
             VIDTPGLFD S  ++++ KEI+ C+ +   G+HAV+          +EEEAAL+ LQ LF
Sbjct:    61 VIDTPGLFDLSVSTDYMNKEIINCLTLTDGGLHAVVLVLSVGTDILKEEEAALNKLQLLF 120

Query:   134 GKKIFDYMIVVFXXXXXXXXXXXXXXXYLGRECPKPLK 171
             G KI DY++V+F               YL R CP+ LK
Sbjct:   121 GSKIVDYLVVLFTGGDVLEKENKTLDDYLSRGCPEFLK 158

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
pfam04548	211	pfam04548, AIG1, AIG1 family	3e-77
cd01852	201	cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)	5e-71
cd01853	248	cd01853, Toc34_like, Translocon at the Outer-envel	6e-13
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	5e-10
TIGR00993	763	TIGR00993, 3a0901s04IAP86, chloroplast protein imp	1e-07
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	2e-07
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	3e-07
cd00880	161	cd00880, Era_like, E	8e-07
TIGR00991	313	TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch	3e-05
cd01850	275	cd01850, CDC_Septin, CDC/Septin GTPase family	5e-04
PRK15494	339	PRK15494, era, GTPase Era; Provisional	5e-04
pfam00735	280	pfam00735, Septin, Septin	5e-04
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	6e-04
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	0.001
COG3596	296	COG3596, COG3596, Predicted GTPase [General functi	0.002

>gnl|CDD|218141 pfam04548, AIG1, AIG1 family

 Score =  229 bits (585), Expect = 3e-77
 Identities = 87/151 (57%), Positives = 115/151 (76%), Gaps = 4/151 (2%)

Query: 21  RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 80
             +VLVG+TGNGKSATGNSILGR+AF+S+  + GVT TC++      DG+++NVIDTPGL
Sbjct: 1   LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTW-DGRIINVIDTPGL 59

Query: 81  FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 140
           FD S  ++F+ KEI++C+ +A+ G HAVL+V S+  RF++EEE AL +LQ LFG KI DY
Sbjct: 60  FDLSVSNDFISKEIIRCLLLAEPGPHAVLLVLSLG-RFTEEEEQALRTLQELFGSKILDY 118

Query: 141 MIVVFTGGDELEDNDETLEDYLGRECPKPLK 171
           MIVVFT  D+LED+   L+DYL   CP+ LK
Sbjct: 119 MIVVFTRKDDLEDDS--LDDYLSDGCPEFLK 147

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211

>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)

 Score =  212 bits (543), Expect = 5e-71
 Identities = 79/147 (53%), Positives = 106/147 (72%), Gaps = 4/147 (2%)

Query: 21  RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 80
             +VLVG+TGNGKSATGN+ILGR+ F+S+ S+SGVT TC+ +  V  DG+ VNVIDTPGL
Sbjct: 1   LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVW-DGRRVNVIDTPGL 59

Query: 81  FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY 140
           FD S   E + KEI++C+ ++  G HA L+V  +  RF++EEE A+  LQ LFG+K+ D+
Sbjct: 60  FDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPLG-RFTEEEEQAVEELQELFGEKVLDH 118

Query: 141 MIVVFTGGDELEDNDETLEDYLGRECP 167
            IV+FT GD+LE    +LEDYL   C 
Sbjct: 119 TIVLFTRGDDLE--GGSLEDYLEDSCE 143

This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201

>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like)

 Score = 64.3 bits (157), Expect = 6e-13
 Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 7/128 (5%)

Query: 22  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 81
           T++++G+TG GKS+T NSI G R     A  S      E+ RTV  DG  +N+IDTPGL 
Sbjct: 33  TILVLGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTV--DGFKLNIIDTPGLL 90

Query: 82  DFSAGSEFVGKEIVKCIG--MAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIF 138
           +  +  + V ++I+  I   + K  I  VL V  +   R    +   L ++   FG  I+
Sbjct: 91  E--SQDQRVNRKILSIIKRFLKKKTIDVVLYVDRLDMYRVDNLDVPLLRAITDSFGPSIW 148

Query: 139 DYMIVVFT 146
              IVV T
Sbjct: 149 RNAIVVLT 156

The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 54.8 bits (132), Expect = 5e-10
 Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 14/151 (9%)

Query: 24  VLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV-VNVIDTPGLFD 82
           V+VGR G GKS+  N++LG       +   G T   ++    L  G+V + ++DTPGL +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGE-VGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDE 59

Query: 83  FSA-GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM 141
           F   G E + + +++       G   +L+V     R S EE+A L  L+ L  + I   +
Sbjct: 60  FGGLGREELARLLLR-------GADLILLVVDSTDRES-EEDAKLLILRRLRKEGI--PI 109

Query: 142 IVVFTGGDELEDNDETLEDYLGRECPKPLKV 172
           I+V    D L +  E  E     E  K L V
Sbjct: 110 ILVGNKID-LLEEREVEELLRLEELAKILGV 139

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 22  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 80
            ++++G++G GKSAT NSI G   F + A   G TS  E++  V   G  + VIDTPGL
Sbjct: 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGL 176

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 9/125 (7%)

Query: 22  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 81
            V LVGR   GKS   N++ G +     +   G T   +    VL  G+ + ++DTPG  
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIV-SDYPGTTR--DPILGVLGLGRQIILVDTPG-L 56

Query: 82  DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM 141
              A      +   + +   ++    +L+V       ++++E  L  L+ L  K     +
Sbjct: 57  IEGASEGKGVEGFNRFLEAIRE-ADLILLVVDASEGLTEDDEEILEELEKLPKKP----I 111

Query: 142 IVVFT 146
           I+V  
Sbjct: 112 ILVLN 116

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 47.9 bits (115), Expect = 3e-07
 Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 15/135 (11%)

Query: 22  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 81
            + +VG    GKS   N++LG     +    +  T+   + R  L  G  V ++DTPGL 
Sbjct: 2   LLAVVGEFSAGKSTLLNALLGEEVLPT--GVTPTTAVITVLRYGLLKG--VVLVDTPGLN 57

Query: 82  DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM 141
                   + +  +           AV+ V S     ++ E   L  +    GKKIF   
Sbjct: 58  STIEHHTEITESFLP-------RADAVIFVLSADQPLTESEREFLKEILKWSGKKIF--- 107

Query: 142 IVVFTGGDELEDNDE 156
             V    D L + + 
Sbjct: 108 -FVLNKIDLLSEEEL 121

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 46.1 bits (110), Expect = 8e-07
 Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 11/133 (8%)

Query: 24  VLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 83
            + GR   GKS+  N++LG+      +   G T     +   L     V +IDTPGL + 
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIV-SPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59

Query: 84  SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV 143
                   +E  +      D    VL+V  V S  +  EE A   L    GK +    ++
Sbjct: 60  GGLGRERVEEARQVA----DRADLVLLV--VDSDLTPVEEEAKLGLLRERGKPV----LL 109

Query: 144 VFTGGDELEDNDE 156
           V    D + +++E
Sbjct: 110 VLNKIDLVPESEE 122

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase)

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 81
          T++++G+ G GKS+T NSI+G R     A  S       + RT  + G  +N+IDTPGL 
Sbjct: 40 TILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT--RAGFTLNIIDTPGLI 97

Query: 82 D 82
          +
Sbjct: 98 E 98

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313

>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 22 TVVLVGRTGNGKSATGNSILGRRAFKSR---ASSSGVTSTCEMQRT--VLKDGQV---VN 73
           +++VG +G GKS   N++ G + + S+   A    +T T E++ +   L++  V   + 
Sbjct: 6  NIMVVGESGLGKSTFINTLFGTKLYPSKYPPAPGEHITKTVEIKISKAELEENGVKLKLT 65

Query: 74 VIDTPGLFDF 83
          VIDTPG  D 
Sbjct: 66 VIDTPGFGDN 75

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275

>gnl|CDD|185391 PRK15494, era, GTPase Era; Provisional

 Score = 39.3 bits (91), Expect = 5e-04
 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 17/123 (13%)

Query: 22  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV------LKDGQVVNVI 75
           +V ++GR  +GKS   N I+G +        S VT   +  R++      LKD QV+ + 
Sbjct: 54  SVCIIGRPNSGKSTLLNRIIGEKL-------SIVTPKVQTTRSIITGIITLKDTQVI-LY 105

Query: 76  DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK 135
           DTPG+F+     E   K +V+C   +      VL++      F       L  L++L   
Sbjct: 106 DTPGIFEPKGSLE---KAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIV 162

Query: 136 KIF 138
            IF
Sbjct: 163 PIF 165

Length = 339

>gnl|CDD|201420 pfam00735, Septin, Septin

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 22 TVVLVGRTGNGKSATGNSILGR-----RAFKSRASSSGVTSTCEMQRTVLKDGQV---VN 73
          T+++VG +G GK+   N++        R     +     T   +     +++  V   + 
Sbjct: 6  TLMVVGESGLGKTTLINTLFLTDLIPERGIPGPSEKIKKTVEIKATTVEIEEDGVKLNLT 65

Query: 74 VIDTPGLFDFS 84
          VIDTPG  D  
Sbjct: 66 VIDTPGFGDAI 76

Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerise to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis. Length = 280

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 20  ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV-VNVIDTP 78
           E  +V+VG    GKS   N +LG +   +     G T                 N++DT 
Sbjct: 1   EIKIVIVGDPNVGKSTLLNRLLGNKISIT-EYKPGTTRNYVTTVIEEDGKTYKFNLLDTA 59

Query: 79  GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVL 109
           G  D+ A      + +   + +  D +  VL
Sbjct: 60  GQEDYDAIRRLYYRAVESSLRVF-DIVILVL 89

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 16/109 (14%)

Query: 21  RTVVLVGRTGNGKSATGNSILGRRAFKSRASS-SGVT-----STCEMQRTVLKDGQVVNV 74
             V +VGR   GKS   N + GRR   +  S   GVT        E        G+   +
Sbjct: 4   PVVAIVGRPNVGKSTLFNRLTGRR--IAIVSDTPGVTRDRIYGDAEWL------GREFIL 55

Query: 75  IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE 123
           IDT GL D     + + + I +   +A +    +L V   R   +  +E
Sbjct: 56  IDTGGLDDGDE--DELQELIREQALIAIEEADVILFVVDGREGITPADE 102

Length = 444

>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction only]

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 35/142 (24%), Positives = 51/142 (35%), Gaps = 33/142 (23%)

Query: 23  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 82
           V+L+G TG GKS+  N++          S  GV +    +  +  DG+ + + DTPGL D
Sbjct: 42  VLLMGATGAGKSSLINALFQGEV--KEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGD 99

Query: 83  FSAGSEFVGKEIVKCIGMAKDGIHA------------VLVVFSVRSRFSQEEEAALHSLQ 130
                           G  KD  H             VL +     R    +E  L  + 
Sbjct: 100 ----------------GKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVI 143

Query: 131 TLFGKKIFDYMIVVFTGGDELE 152
            L   K    ++ V T  D  E
Sbjct: 144 ILGLDK---RVLFVVTQADRAE 162

Length = 296

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.95
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.95
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.9
COG1159	298	Era GTPase [General function prediction only]	99.89
COG1160	444	Predicted GTPases [General function prediction onl	99.88
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.87
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.85
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.83
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.81
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.81
PRK00089	292	era GTPase Era; Reviewed	99.8
COG0218	200	Predicted GTPase [General function prediction only	99.8
PRK15494	339	era GTPase Era; Provisional	99.79
COG1160	444	Predicted GTPases [General function prediction onl	99.79
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.78
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.78
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.78
PRK12298	390	obgE GTPase CgtA; Reviewed	99.78
PRK12299	335	obgE GTPase CgtA; Reviewed	99.77
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.77
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.77
COG1084	346	Predicted GTPase [General function prediction only	99.76
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.76
PRK03003	472	GTP-binding protein Der; Reviewed	99.76
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.76
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.76
PRK00093	435	GTP-binding protein Der; Reviewed	99.76
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.76
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.75
PRK00093	435	GTP-binding protein Der; Reviewed	99.75
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.75
COG0486	454	ThdF Predicted GTPase [General function prediction	99.75
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.74
PRK12297	424	obgE GTPase CgtA; Reviewed	99.74
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.74
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.74
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.73
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.73
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.73
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.73
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.73
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.73
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.73
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.72
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.72
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.72
cd00881	189	GTP_translation_factor GTP translation factor fami	99.72
COG3596	296	Predicted GTPase [General function prediction only	99.72
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.72
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.72
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.72
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.72
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.72
PRK12296	500	obgE GTPase CgtA; Reviewed	99.72
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.72
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.72
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.71
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.71
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.71
PRK03003	472	GTP-binding protein Der; Reviewed	99.71
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.71
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.71
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.71
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.71
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.7
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.7
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.7
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.7
PRK11058	426	GTPase HflX; Provisional	99.7
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.7
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.7
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.7
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.7
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.7
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.7
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.7
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.69
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.69
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.69
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.69
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.69
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.69
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.69
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.69
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.69
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.69
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.69
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.68
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.68
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.68
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.68
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.68
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.68
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.68
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.68
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.68
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.68
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.68
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.68
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.68
PTZ00133	182	ADP-ribosylation factor; Provisional	99.68
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.68
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.68
CHL00071	409	tufA elongation factor Tu	99.68
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.68
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.67
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.67
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.67
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.67
PRK04213	201	GTP-binding protein; Provisional	99.67
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.67
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.67
PLN00223	181	ADP-ribosylation factor; Provisional	99.67
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.67
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.66
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.66
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.66
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.66
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.66
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.66
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.66
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.66
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.66
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.66
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.66
PLN03110	216	Rab GTPase; Provisional	99.66
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.66
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.66
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.65
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.65
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.65
PRK05306	787	infB translation initiation factor IF-2; Validated	99.65
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.65
PLN03108	210	Rab family protein; Provisional	99.65
PLN03118	211	Rab family protein; Provisional	99.65
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.65
PTZ00369	189	Ras-like protein; Provisional	99.64
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.64
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.64
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.64
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.64
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.64
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.64
PLN03127	447	Elongation factor Tu; Provisional	99.64
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.63
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.63
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.63
CHL00189	742	infB translation initiation factor 2; Provisional	99.63
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.63
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.63
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.63
PRK12735	396	elongation factor Tu; Reviewed	99.63
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.63
PRK12736	394	elongation factor Tu; Reviewed	99.63
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.63
PRK12317	425	elongation factor 1-alpha; Reviewed	99.62
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.62
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.62
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.62
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.62
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.62
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.62
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.62
COG0536	369	Obg Predicted GTPase [General function prediction	99.62
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.61
PRK12739	691	elongation factor G; Reviewed	99.61
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.61
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.61
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.61
PRK00049	396	elongation factor Tu; Reviewed	99.61
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.61
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.61
PRK00007	693	elongation factor G; Reviewed	99.61
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.61
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.61
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.61
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.6
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.6
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.6
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.6
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.6
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.6
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.6
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.6
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.6
PLN03126	478	Elongation factor Tu; Provisional	99.6
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.6
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.6
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.6
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.59
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.59
PRK10218	607	GTP-binding protein; Provisional	99.59
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.59
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.58
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.58
PLN00023	334	GTP-binding protein; Provisional	99.58
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.58
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.58
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.58
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.58
COG2229	187	Predicted GTPase [General function prediction only	99.58
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.58
COG2262	411	HflX GTPases [General function prediction only]	99.57
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.57
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.57
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.57
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.57
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.57
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.57
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.57
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.56
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.56
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.56
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.56
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.55
PRK09866	741	hypothetical protein; Provisional	99.55
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.54
PRK13351	687	elongation factor G; Reviewed	99.54
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.54
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.54
PRK04004	586	translation initiation factor IF-2; Validated	99.54
PTZ00141	446	elongation factor 1- alpha; Provisional	99.53
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.53
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.53
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.53
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.53
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.53
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.53
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.52
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.52
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.51
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.5
PRK05433	600	GTP-binding protein LepA; Provisional	99.5
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.49
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.49
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.48
PTZ00416	836	elongation factor 2; Provisional	99.48
COG1100	219	GTPase SAR1 and related small G proteins [General	99.48
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.47
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.46
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.45
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.45
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.44
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.44
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.44
COG1163	365	DRG Predicted GTPase [General function prediction	99.44
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.44
KOG1145	683	consensus Mitochondrial translation initiation fac	99.41
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.4
PLN00043	447	elongation factor 1-alpha; Provisional	99.4
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.4
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.4
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.4
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.39
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.38
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.37
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.37
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.37
PRK12740	668	elongation factor G; Reviewed	99.36
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.36
KOG0090	238	consensus Signal recognition particle receptor, be	99.36
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.36
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.35
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.35
PRK07560	731	elongation factor EF-2; Reviewed	99.35
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.34
PTZ00258	390	GTP-binding protein; Provisional	99.33
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.33
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.33
KOG0394	210	consensus Ras-related GTPase [General function pre	99.33
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.32
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.32
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.31
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.3
PRK09601	364	GTP-binding protein YchF; Reviewed	99.3
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.3
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.26
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.26
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.25
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	99.25
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.25
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.25
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.25
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.25
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.24
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.24
cd03246	173	ABCC_Protease_Secretion This family represents the	99.24
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.24
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.24
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.23
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.23
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.23
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.23
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.22
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.22
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.22
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.22
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.22
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.22
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.22
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.22
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.22
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.22
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.21
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.21
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.2
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.2
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.2
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.2
PRK10908	222	cell division protein FtsE; Provisional	99.2
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.2
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.19
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.19
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.19
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.19
PRK09602	396	translation-associated GTPase; Reviewed	99.19
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.19
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.19
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.19
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.19
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.19
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.18
COG4988	559	CydD ABC-type transport system involved in cytochr	99.18
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.18
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.18
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.18
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.18
COG0488	530	Uup ATPase components of ABC transporters with dup	99.17
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.17
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.17
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.17
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.17
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.16
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.16
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.16
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.16
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.16
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.16
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.16
KOG0395	196	consensus Ras-related GTPase [General function pre	99.15
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.15
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.15
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.15
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.15
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.15
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.14
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.14
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.14
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.14
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.14
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.14
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.14
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.14
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.14
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.14
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.13
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.13
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.13
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.13
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.13
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.13
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.13
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.13
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.13
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.13
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.12
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.12
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.12
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.12
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.11
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.11
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.11
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.11
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.11
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.11
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.11
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.1
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.1
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.1
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.1
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.1
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.1
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.1
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.1
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.09
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.09
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.09
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.09
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.09
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.09
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.09
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.09
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.09
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.08
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.08
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.08
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.08
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.08
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	99.08
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.08
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.08
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.08
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.08
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.08
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.07
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.07
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.07
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.07
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.07
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.07
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.07
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.07
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.06
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.06
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.06
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.06
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.06
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.06
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	99.05
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.05
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.05
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.05
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.05
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.05
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.05
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.04
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.04
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.04
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	99.04
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.04
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.04
PRK13768	253	GTPase; Provisional	99.04
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.04
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.04
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.04
KOG2486	320	consensus Predicted GTPase [General function predi	99.04
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.03
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.03
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.03
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.03
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.03
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.02
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.02
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.02
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.02
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.02
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.02
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.02
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.02
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.01
COG0488	530	Uup ATPase components of ABC transporters with dup	99.01
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.01
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.01
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.0
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	99.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.0
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.99
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.99
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.99
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.99
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.99
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.99
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.99
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.99
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.98
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.98
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.98
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.98
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.98
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.98
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.98
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.97
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.97
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.97
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.97
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	98.97
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.97
PRK12288	347	GTPase RsgA; Reviewed	98.97
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.97
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.97
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.97
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.97
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.96
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.96
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.96
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.96
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.96
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.96
KOG4252	246	consensus GTP-binding protein [Signal transduction	98.96
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.96
COG1162	301	Predicted GTPases [General function prediction onl	98.95
PRK14845	1049	translation initiation factor IF-2; Provisional	98.95
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.95
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.95
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.95
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.95

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.95  E-value=1.7e-27  Score=170.86  Aligned_cols=148  Identities=45%  Similarity=0.771  Sum_probs=120.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+|+++|.+|+||||++|+|+|...+..+....+.|..+......+ .++.+.+|||||+.+.....+...+++.+++..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~   79 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL   79 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence            4799999999999999999999998877766677788887777766 889999999999998777778888889998888


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhcccCCCCccc
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKV  172 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~~~~~~l~~  172 (174)
                      ..+++|++++|++.. +++..+...++.+.+.+|.+.+++++||+|++|...+.  .+++|+++..+..|++
T Consensus        80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~--~~~~~l~~~~~~~l~~  148 (212)
T PF04548_consen   80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD--SLEDYLKKESNEALQE  148 (212)
T ss_dssp             TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT--THHHHHHHHHHHHHHH
T ss_pred             ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc--cHHHHHhccCchhHhH
Confidence            889999999999999 99999999999999999999999999999999998874  5888887533333433

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.95  E-value=2.7e-26  Score=162.97  Aligned_cols=141  Identities=55%  Similarity=0.888  Sum_probs=120.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      ++|+++|.+|+|||||+|+|+|...+..+....+.|..+......+ .+..+.++||||+.+.....+....++.+++..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~   79 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL   79 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence            4799999999999999999999987766555556777777777666 788999999999998766666777888888887


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhccc
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRE  165 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~~  165 (174)
                      +.+++|++++|+++. .++..+...++.+++.++...++++++++||+|.+.+  ..+++|+...
T Consensus        80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~~  141 (196)
T cd01852          80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLENS  141 (196)
T ss_pred             cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHhc
Confidence            889999999999998 4999999999999999998888899999999999876  4778777663

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.90  E-value=9.9e-23  Score=151.12  Aligned_cols=147  Identities=25%  Similarity=0.339  Sum_probs=106.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ...+|+++|.+|+||||++|+|+|...+..... .+.+.......... .+..+.+|||||+.+...    ...+....+
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f-~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~----~~e~~~~~i  110 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAF-QSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGY----INDQAVNII  110 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeEEEEEEEE-CCeEEEEEECCCCCchHH----HHHHHHHHH
Confidence            458999999999999999999999875433211 12222222222333 678899999999998532    222222322


Q ss_pred             Hh--ccCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhcccCCCCccc
Q 030624           99 GM--AKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKV  172 (174)
Q Consensus        99 ~~--~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~~~~~~l~~  172 (174)
                      +.  ...++|++|||.+.+ .+++..+...++.+++.+|...+.++++++||+|...+++.++++|+.+ ++..+++
T Consensus       111 k~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~  186 (313)
T TIGR00991       111 KRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLR  186 (313)
T ss_pred             HHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHH
Confidence            22  234799999997654 2788889999999999999998899999999999987766889999988 4444544

>COG1159 Era GTPase [General function prediction only]

Probab=99.89  E-value=1e-21  Score=143.22  Aligned_cols=126  Identities=22%  Similarity=0.314  Sum_probs=108.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +...++++|++++|||||+|.|+|...  +-.+....|+......+...++..+.++||||+...   .+.+++.+.+.+
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a   79 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAA   79 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHH
Confidence            346899999999999999999999986  334667778878888877767889999999999975   577888888888


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ..++..+|+++||+|+++.++..++..++.++..     +.|+++++||.|...++
T Consensus        80 ~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~~  130 (298)
T COG1159          80 RSALKDVDLILFVVDADEGWGPGDEFILEQLKKT-----KTPVILVVNKIDKVKPK  130 (298)
T ss_pred             HHHhccCcEEEEEEeccccCCccHHHHHHHHhhc-----CCCeEEEEEccccCCcH
Confidence            8999999999999999978999999999888882     15999999999998875

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.88  E-value=2.5e-21  Score=148.29  Aligned_cols=133  Identities=25%  Similarity=0.266  Sum_probs=110.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      +.|+++|.+++|||||+|.|++....-. ...++.|++......+| .+..+.+|||+|+.+  ...+.+.+.++.+...
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV-~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~--~~~~~l~~~i~~Qa~~   79 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV-SDTPGVTRDRIYGDAEW-LGREFILIDTGGLDD--GDEDELQELIREQALI   79 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEe-ecCCCCccCCccceeEE-cCceEEEEECCCCCc--CCchHHHHHHHHHHHH
Confidence            6899999999999999999999886433 35677888888888888 778899999999997  3346788889999999


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  163 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~  163 (174)
                      +..++|++|||+|..+++++.|..+.+.|+...     +|+++|+||+|....+ ...-+|..
T Consensus        80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~-----kpviLvvNK~D~~~~e-~~~~efys  136 (444)
T COG1160          80 AIEEADVILFVVDGREGITPADEEIAKILRRSK-----KPVILVVNKIDNLKAE-ELAYEFYS  136 (444)
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcC-----CCEEEEEEcccCchhh-hhHHHHHh
Confidence            999999999999999899999999998888542     6999999999997442 33444443

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.87  E-value=5.7e-21  Score=152.43  Aligned_cols=148  Identities=22%  Similarity=0.312  Sum_probs=108.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+|+++|.+|+|||||+|+|++...+..... ...|+.+....... .+..+.+|||||+.+..... .....+.+++..
T Consensus       119 lrIvLVGKTGVGKSSLINSILGekvf~vss~-~~~TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq-~~neeILk~Ik~  195 (763)
T TIGR00993       119 LNILVLGKSGVGKSATINSIFGEVKFSTDAF-GMGTTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQ-SKNEKILSSVKK  195 (763)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccccccccCC-CCCceEEEEEEEEE-CCceEEEEECCCCCccccch-HHHHHHHHHHHH
Confidence            6899999999999999999999886655432 23344443333333 67889999999999864332 234444444433


Q ss_pred             c--cCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCCh-----hhHHHHhcccCCCCccc
Q 030624          101 A--KDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND-----ETLEDYLGRECPKPLKV  172 (174)
Q Consensus       101 ~--~~~~~~il~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~-----~~~~~~~~~~~~~~l~~  172 (174)
                      +  ..++|++|||++.+. ..+.++...++.|++.||...++++|||+||+|...+++     .++++|+.+ ++..+++
T Consensus       196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~Lq~  274 (763)
T TIGR00993       196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIVQQ  274 (763)
T ss_pred             HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHHHH
Confidence            2  246899999998752 334467889999999999999999999999999997543     579999987 5444544

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.85  E-value=9.3e-20  Score=133.22  Aligned_cols=135  Identities=29%  Similarity=0.346  Sum_probs=97.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ...+|+++|.+|+|||||+|+|++...+... ...+.|.........+ ++..+.+|||||+.+..... .........+
T Consensus        30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~-~~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~-~~~~~~~~~I  106 (249)
T cd01853          30 FSLTILVLGKTGVGKSSTINSIFGERKAATS-AFQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQ-RVNRKILSSI  106 (249)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhH-HHHHHHHHHH
Confidence            3489999999999999999999998764443 2223455444444444 67789999999999853211 1222233333


Q ss_pred             Hhc--cCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChh
Q 030624           99 GMA--KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE  156 (174)
Q Consensus        99 ~~~--~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~  156 (174)
                      ..+  ...+|+++|+...+ .+++..+...++.|.+.++...+.++++|+||+|...++..
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~  167 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGL  167 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCC
Confidence            222  23679999998664 26788889999999999998888999999999999866543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.83  E-value=2.4e-19  Score=116.97  Aligned_cols=116  Identities=23%  Similarity=0.358  Sum_probs=78.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      +|+++|.+|+|||||+|+|++......+ ...+.|.........+ .+..+.++||||+.+...... ....+.+.....
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~-~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~-~~~~~~~~~~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVS-NIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDN-DGKEIRKFLEQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEES-SSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHH-HHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhcccccccc-ccccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhH-HHHHHHHHHHHH
Confidence            6899999999999999999986543333 2344555554444445 778889999999987432221 112333444444


Q ss_pred             cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624          102 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                       ..+|++++|+++++..+..+...++.++    ..  +|+++|+||
T Consensus        78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~----~~--~~~i~v~NK  116 (116)
T PF01926_consen   78 -SKSDLIIYVVDASNPITEDDKNILRELK----NK--KPIILVLNK  116 (116)
T ss_dssp             -CTESEEEEEEETTSHSHHHHHHHHHHHH----TT--SEEEEEEES
T ss_pred             -HHCCEEEEEEECCCCCCHHHHHHHHHHh----cC--CCEEEEEcC
Confidence             8889999999987533444556666663    22  699999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR00436 era GTP-binding protein Era

Probab=99.81  E-value=1e-18  Score=129.84  Aligned_cols=121  Identities=21%  Similarity=0.240  Sum_probs=83.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      +|+++|++|+|||||+|+|++......  +....|+...........+..+.++||||+....   ....+.+.+.+...
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~v--s~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~   76 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISIT--SPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA   76 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeec--CCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence            689999999999999999999864322  2233344334444444355678999999998642   23344455555556


Q ss_pred             cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          102 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +..+|++++|+|+++.... +..+++.+...     ..|+++|+||+|+...
T Consensus        77 l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~~-----~~p~ilV~NK~Dl~~~  122 (270)
T TIGR00436        77 IGGVDLILFVVDSDQWNGD-GEFVLTKLQNL-----KRPVVLTRNKLDNKFK  122 (270)
T ss_pred             HhhCCEEEEEEECCCCCch-HHHHHHHHHhc-----CCCEEEEEECeeCCCH
Confidence            7788999999999854433 34444444432     2689999999999744

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.81  E-value=1.8e-19  Score=122.23  Aligned_cols=123  Identities=23%  Similarity=0.247  Sum_probs=82.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh-HHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS-EFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~-~~~~~~~~~~~~   99 (174)
                      .+|+++|.+++|||||+|+|+|.... .+ ..++.|.......+.+ .+..+.++|+||.++..... +.  +-.++.+.
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~-v~-n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~ee--~v~~~~l~   75 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQK-VG-NWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEEE--RVARDYLL   75 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEE-EE-ESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHHH--HHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCce-ec-CCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcHH--HHHHHHHh
Confidence            37999999999999999999999843 33 4567777777777766 77899999999988743322 21  11222222


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhh
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET  157 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~  157 (174)
                        ..++|++++|+|++ .+.. +...+..+.+.   .  .|+++++||+|+.+..+..
T Consensus        76 --~~~~D~ii~VvDa~-~l~r-~l~l~~ql~e~---g--~P~vvvlN~~D~a~~~g~~  124 (156)
T PF02421_consen   76 --SEKPDLIIVVVDAT-NLER-NLYLTLQLLEL---G--IPVVVVLNKMDEAERKGIE  124 (156)
T ss_dssp             --HTSSSEEEEEEEGG-GHHH-HHHHHHHHHHT---T--SSEEEEEETHHHHHHTTEE
T ss_pred             --hcCCCEEEEECCCC-CHHH-HHHHHHHHHHc---C--CCEEEEEeCHHHHHHcCCE
Confidence              46789999999998 5422 23333334433   2  7999999999998765433

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK00089 era GTPase Era; Reviewed

Probab=99.80  E-value=2.5e-18  Score=129.11  Aligned_cols=123  Identities=22%  Similarity=0.303  Sum_probs=87.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ...|+++|++|||||||+|+|+|......  +....|+...........+..+.++||||+.+..   ....+.+...+.
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~v--s~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~   79 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIV--SPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAW   79 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeec--CCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHH
Confidence            46899999999999999999999865322  2233344333333333244689999999998643   334455555666


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      .....+|++++|+|+++.++..+...++.+...     ..|+++|+||+|+..
T Consensus        80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~~  127 (292)
T PRK00089         80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-----KTPVILVLNKIDLVK  127 (292)
T ss_pred             HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-----CCCEEEEEECCcCCC
Confidence            677889999999999866777666666665532     259999999999984

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.80  E-value=4.4e-18  Score=118.09  Aligned_cols=128  Identities=20%  Similarity=0.265  Sum_probs=97.2

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh---HHHHH
Q 030624           16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS---EFVGK   92 (174)
Q Consensus        16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~---~~~~~   92 (174)
                      |.....-|+++|.+++|||||||+|++......-...++.|...++..+    ...++++|.||+.-.....   +.+.+
T Consensus        20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~----~~~~~lVDlPGYGyAkv~k~~~e~w~~   95 (200)
T COG0218          20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV----DDELRLVDLPGYGYAKVPKEVKEKWKK   95 (200)
T ss_pred             CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe----cCcEEEEeCCCcccccCCHHHHHHHHH
Confidence            3334478999999999999999999997633232355677777776654    2338899999999766544   34445


Q ss_pred             HHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           93 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+.+++..... ...+++++|+...+...|+++++++.+.-     .|+++++||+|+...
T Consensus        96 ~i~~YL~~R~~-L~~vvlliD~r~~~~~~D~em~~~l~~~~-----i~~~vv~tK~DKi~~  150 (200)
T COG0218          96 LIEEYLEKRAN-LKGVVLLIDARHPPKDLDREMIEFLLELG-----IPVIVVLTKADKLKK  150 (200)
T ss_pred             HHHHHHhhchh-heEEEEEEECCCCCcHHHHHHHHHHHHcC-----CCeEEEEEccccCCh
Confidence            55555554443 78899999998788888999999988874     689999999999985

>PRK15494 era GTPase Era; Provisional

Probab=99.79  E-value=7.6e-18  Score=128.61  Aligned_cols=133  Identities=22%  Similarity=0.285  Sum_probs=88.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+|+++|.+|+|||||+|+|++....... .....|.........+ ++..+.++||||+.+..   ..+...+.+.+..
T Consensus        53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs-~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~---~~l~~~~~r~~~~  127 (339)
T PRK15494         53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVT-PKVQTTRSIITGIITL-KDTQVILYDTPGIFEPK---GSLEKAMVRCAWS  127 (339)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCCceeecc-CCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCc---ccHHHHHHHHHHH
Confidence            48999999999999999999987642211 1222333222223334 56789999999997532   2234445555545


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  163 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~  163 (174)
                      ++..+|++++|+|..+.++..+..+++.++...     .|.++|+||+|+.......+.+++.
T Consensus       128 ~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~-----~p~IlViNKiDl~~~~~~~~~~~l~  185 (339)
T PRK15494        128 SLHSADLVLLIIDSLKSFDDITHNILDKLRSLN-----IVPIFLLNKIDIESKYLNDIKAFLT  185 (339)
T ss_pred             HhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcC-----CCEEEEEEhhcCccccHHHHHHHHH
Confidence            577899999999998777777777766665431     4678899999986542223344443

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.79  E-value=8e-19  Score=134.60  Aligned_cols=139  Identities=22%  Similarity=0.242  Sum_probs=103.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ...+++++|.+++|||||+|+|++....-.. ...+.|.+.-...+++ +++.+.++||.|+-....-.+...+.-....
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh
Confidence            4589999999999999999999998754332 4456677766667776 8899999999999875443332221111122


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhcc
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  164 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~  164 (174)
                      ..+...+|++++|+|++++++.++......+.+..     ++++||+||||+.+.+..+++++.++
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g-----~~~vIvvNKWDl~~~~~~~~~~~k~~  315 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEAG-----RGIVIVVNKWDLVEEDEATMEEFKKK  315 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcC-----CCeEEEEEccccCCchhhHHHHHHHH
Confidence            22556779999999999999999999998888875     68999999999988644455555433

>cd01894 EngA1 EngA1 subfamily

Probab=99.78  E-value=6.6e-18  Score=115.18  Aligned_cols=121  Identities=25%  Similarity=0.292  Sum_probs=84.4

Q ss_pred             EEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccC
Q 030624           24 VLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD  103 (174)
Q Consensus        24 ~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~  103 (174)
                      +++|.+|+|||||+|.|++....... ...+.|.........+ .+..+.++||||+.+...   .....+.........
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~   75 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVE-DTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE   75 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeec-CCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence            47899999999999999987532222 2233444444444545 567899999999987432   334444444445567


Q ss_pred             CceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624          104 GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus       104 ~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ++|++++++|..+.....+....+.++...     .|+++|+||+|+....
T Consensus        76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-----~piiiv~nK~D~~~~~  121 (157)
T cd01894          76 EADVILFVVDGREGLTPADEEIAKYLRKSK-----KPVILVVNKVDNIKEE  121 (157)
T ss_pred             hCCEEEEEEeccccCCccHHHHHHHHHhcC-----CCEEEEEECcccCChH
Confidence            789999999998666666666655555432     6999999999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.78  E-value=1.4e-17  Score=131.17  Aligned_cols=122  Identities=25%  Similarity=0.281  Sum_probs=95.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      +|+++|.+|+|||||+|.|++...... ....+.|.........+ .+..+.++||||+...   .+.+...+.+....+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~   75 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIV-SDTPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA   75 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCccee-cCCCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence            489999999999999999999763222 23345666666666666 7788999999998642   244556666777777


Q ss_pred             cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          102 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +..+|++++|+|+.++++..+..+.+.+++..     +|+++|+||+|+...
T Consensus        76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~-----~piilVvNK~D~~~~  122 (429)
T TIGR03594        76 IEEADVILFVVDGREGLTPEDEEIAKWLRKSG-----KPVILVANKIDGKKE  122 (429)
T ss_pred             HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhC-----CCEEEEEECccCCcc
Confidence            88899999999998788888888888777642     689999999998764

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01895 EngA2 EngA2 subfamily

Probab=99.78  E-value=2e-17  Score=114.37  Aligned_cols=127  Identities=20%  Similarity=0.204  Sum_probs=80.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|.+|+|||||+|+|++....... ...+.+.......... .+..+.+|||||+.+.................
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVS-DIAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceecc-CCCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            368999999999999999999987532222 1222333332233333 56678999999998643211111111111122


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+|++++|+|+.++.+.....++..+...   .  .|+++++||+|+...
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~---~--~~~iiv~nK~Dl~~~  128 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLRIAGLILEE---G--KALVIVVNKWDLVEK  128 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc---C--CCEEEEEeccccCCc
Confidence            345678999999999867666555554443332   2  689999999999765

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.78  E-value=2.4e-17  Score=127.62  Aligned_cols=125  Identities=19%  Similarity=0.208  Sum_probs=83.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      .|+|+|.++||||||+|+|++..+ .. ...+..|.......+.+.+.+.+.++||||+.+.......+...+.+.    
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~-~v-s~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~----  234 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKP-KV-ADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKH----  234 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcc-cc-cCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHH----
Confidence            599999999999999999998764 12 122344544455445553346799999999987554444455555554    


Q ss_pred             cCCceEEEEEEeCCCCC---C--HHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          102 KDGIHAVLVVFSVRSRF---S--QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~---~--~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..++|++++|+|++ ..   .  .....+++.+......-..+|.++|+||+|+...
T Consensus       235 i~radvlL~VVD~s-~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~  290 (390)
T PRK12298        235 LERCRVLLHLIDIA-PIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE  290 (390)
T ss_pred             HHhCCEEEEEeccC-cccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence            34569999999987 22   1  2224555555554222123689999999998754

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.77  E-value=4.2e-17  Score=124.01  Aligned_cols=126  Identities=18%  Similarity=0.168  Sum_probs=85.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      .|+++|.++||||||+|+|++..+- .. ..+..|.......+.+.+...+.++|+||+.+.......+..++.+.+.  
T Consensus       160 dVglVG~PNaGKSTLln~ls~a~~~-va-~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie--  235 (335)
T PRK12299        160 DVGLVGLPNAGKSTLISAVSAAKPK-IA-DYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIE--  235 (335)
T ss_pred             CEEEEcCCCCCHHHHHHHHHcCCCc-cC-CCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhh--
Confidence            4899999999999999999986532 21 2234455555555555355789999999998755444445555555544  


Q ss_pred             cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          102 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                        +++++++|+|+++.-+.++ ..+.+.+......-..+|+++|+||+|+...
T Consensus       236 --~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~  286 (335)
T PRK12299        236 --RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE  286 (335)
T ss_pred             --hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence              5599999999984333333 4555556554322123699999999998754

>cd04163 Era Era subfamily

Probab=99.77  E-value=2.4e-17  Score=113.08  Aligned_cols=123  Identities=23%  Similarity=0.288  Sum_probs=80.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|++|+|||||+|++++........ .. .+............+..+.++||||+.......   ...+.....
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~---~~~~~~~~~   77 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSP-KP-QTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL---GERMVKAAW   77 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccC-CC-CceeceEEEEEEcCCeEEEEEECCCCCcchHHH---HHHHHHHHH
Confidence            3789999999999999999999976432221 11 222222222222245678999999998643221   122333334


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      .....+|.+++|++.++........+.+.+...     ..|+++++||+|+..
T Consensus        78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~  125 (168)
T cd04163          78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-----KTPVILVLNKIDLVK  125 (168)
T ss_pred             HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-----CCCEEEEEEchhccc
Confidence            456778999999999866555556665555543     158999999999974

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.77  E-value=4.9e-17  Score=113.85  Aligned_cols=127  Identities=18%  Similarity=0.274  Sum_probs=81.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      .....+|+++|++|+|||||+|.|++...........+.|.......  .  +..+.++||||+......... ...+..
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~liDtpG~~~~~~~~~~-~~~~~~   89 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE--V--NDGFRLVDLPGYGYAKVSKEE-KEKWQK   89 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE--e--CCcEEEEeCCCCccccCChhH-HHHHHH
Confidence            34458999999999999999999998752111112233344333222  2  246899999998764332221 112221


Q ss_pred             HH---HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CI---GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~---~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..   ......+|++++|+|.+++++..+...++.+...     ..|+++++||+|+..+
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~~  144 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-----GIPVLIVLTKADKLKK  144 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCCH
Confidence            11   1123456899999999877888887766655442     2689999999999754

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.76  E-value=2.2e-17  Score=121.85  Aligned_cols=126  Identities=18%  Similarity=0.193  Sum_probs=85.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChH-HHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE-FVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~-~~~~~~~~~~~   99 (174)
                      +++++.|.+++|||||++.+++..+  .-.+.+..|....+..+++ +..++.+|||||+.+...... .+.++-.-+++
T Consensus       169 pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~  245 (346)
T COG1084         169 PTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEERNEIERQAILALR  245 (346)
T ss_pred             CeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeeec-CCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence            8999999999999999999999875  3334555666666666665 667999999999998443221 12222222222


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                         --.++|+|++|+++.+...-...+..+.+.. .....|+++|+||+|..+.
T Consensus       246 ---hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk-~~f~~p~v~V~nK~D~~~~  295 (346)
T COG1084         246 ---HLAGVILFLFDPSETCGYSLEEQISLLEEIK-ELFKAPIVVVINKIDIADE  295 (346)
T ss_pred             ---HhcCeEEEEEcCccccCCCHHHHHHHHHHHH-HhcCCCeEEEEecccccch
Confidence               2238899999998655555444444444442 2222689999999999855

>cd01898 Obg Obg subfamily

Probab=99.76  E-value=2.6e-17  Score=113.89  Aligned_cols=125  Identities=21%  Similarity=0.202  Sum_probs=76.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCc-EEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ-VVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .|+++|.+|||||||+|+|.+... ..+. ....|.........+ .+. .+.++||||+.+...........+.+.   
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~-~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~---   75 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKP-KIAD-YPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLRH---   75 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCc-cccC-CCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHHH---
Confidence            589999999999999999998653 1111 122233333333334 444 899999999865322221222233322   


Q ss_pred             ccCCceEEEEEEeCCCC-CCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSR-FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                       +..+|++++|+|+++. -.... ..+.+.+.+........|+++|+||+|+...
T Consensus        76 -~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~  129 (170)
T cd01898          76 -IERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE  129 (170)
T ss_pred             -HHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence             2356999999999844 12222 4555555554221123689999999998765

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.76  E-value=6e-17  Score=128.83  Aligned_cols=124  Identities=25%  Similarity=0.229  Sum_probs=91.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .++|+++|.+|+|||||+|+|++....... ...+.|.........+ .+..+.++||||+...   ...+...+...+.
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~~~  112 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQAE  112 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHHHH
Confidence            478999999999999999999987542222 3344555555555555 6778999999998742   1234455666666


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .++..+|++|+|+|++++.+..+..+.+.++..     ..|+++|+||+|+...
T Consensus       113 ~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~~~  161 (472)
T PRK03003        113 VAMRTADAVLFVVDATVGATATDEAVARVLRRS-----GKPVILAANKVDDERG  161 (472)
T ss_pred             HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCcc
Confidence            677888999999999878887777777766642     2699999999998653

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.76  E-value=3.5e-17  Score=113.01  Aligned_cols=115  Identities=16%  Similarity=0.153  Sum_probs=77.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe--CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .++++|++|+|||||+|+|++......  ...+.|...........  .+..+.++||||...           +.....
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~~   68 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMRA   68 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHHH
Confidence            589999999999999999998764322  22233443333444431  256899999999764           222223


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ..+..+|++++|+|+++.........+..+...     ..|+++|+||+|+....
T Consensus        69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~-----~~p~ivv~NK~Dl~~~~  118 (168)
T cd01887          69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKAA-----NVPFIVALNKIDKPNAN  118 (168)
T ss_pred             HHHhhcCEEEEEEECCCCccHHHHHHHHHHHHc-----CCCEEEEEEceeccccc
Confidence            345678999999999866555555555554432     26899999999987543

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04171 SelB SelB subfamily

Probab=99.76  E-value=3.5e-17  Score=112.43  Aligned_cols=117  Identities=22%  Similarity=0.331  Sum_probs=77.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .|+++|.+|+|||||+|+|++..... ......+.|.........+..+..+.+|||||..+           +......
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~~   70 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNMLA   70 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHHh
Confidence            68999999999999999999753110 11111233444444444442266899999999753           2233334


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+..+|++++|+|+++.......+.+..+... +   .+|+++++||+|+...
T Consensus        71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~---~~~~ilv~NK~Dl~~~  119 (164)
T cd04171          71 GAGGIDLVLLVVAADEGIMPQTREHLEILELL-G---IKRGLVVLTKADLVDE  119 (164)
T ss_pred             hhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-C---CCcEEEEEECccccCH
Confidence            56678999999999865555555555444332 1   1489999999999754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.76  E-value=5.5e-17  Score=128.06  Aligned_cols=122  Identities=24%  Similarity=0.247  Sum_probs=92.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+|+++|.+|+|||||+|.|++....... ...+.|.........+ .+..+.+|||||+.+..   +.....+......
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~-~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~   76 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVA-DTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL   76 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence            57999999999999999999987643222 2344555555555666 67889999999998622   2244556666666


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ++..+|++++|+|+.++++..+....++++..     ..|+++|+||+|+..
T Consensus        77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~~  123 (435)
T PRK00093         77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGPD  123 (435)
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCcc
Confidence            77888999999999878888887777777664     269999999999754

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.76  E-value=8.2e-17  Score=109.67  Aligned_cols=122  Identities=25%  Similarity=0.292  Sum_probs=80.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+++++|++|+|||||+|++++....... ...+.+.........+ ....+.++||||+.+....   ...........
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~---~~~~~~~~~~~   76 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVS-DIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDE---IEKIGIERARE   76 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEecc-CCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcch---HHHHHHHHHHH
Confidence            68999999999999999999987632222 1233333333334444 5668899999999875422   11222222233


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ...++|++++|+|++++.+..+...+..   .  ..  .|+++|+||+|+....
T Consensus        77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~--~~--~~vi~v~nK~D~~~~~  123 (157)
T cd04164          77 AIEEADLVLFVIDASRGLDEEDLEILEL---P--AD--KPIIVVLNKSDLLPDS  123 (157)
T ss_pred             HHhhCCEEEEEEECCCCCCHHHHHHHHh---h--cC--CCEEEEEEchhcCCcc
Confidence            4567899999999986666655544432   1  12  6999999999998653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.75  E-value=1.1e-17  Score=118.40  Aligned_cols=118  Identities=18%  Similarity=0.218  Sum_probs=83.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      ..+++++|+.++|||||+++|++.....              ..+...+.|.......+.+ ++..+.++||||+.+   
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~---   77 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD---   77 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH---
Confidence            3689999999999999999998642100              0111334555555555554 567889999999864   


Q ss_pred             ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                              +..........+|++++|+|+..+....+.+.+..+.... .   +++++++||+|+...
T Consensus        78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~-~---~~iIvviNK~D~~~~  133 (195)
T cd01884          78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVG-V---PYIVVFLNKADMVDD  133 (195)
T ss_pred             --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC-C---CcEEEEEeCCCCCCc
Confidence                    3444444566789999999998788888888877766542 1   247899999999743

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.75  E-value=9.1e-17  Score=126.82  Aligned_cols=128  Identities=21%  Similarity=0.188  Sum_probs=88.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ...+++++|.+|+|||||+|+|++....... ...+.|.........+ ++..+.++||||+.......+..........
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVS-DIAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            3589999999999999999999987643222 2334444444344444 6778999999998764433222222221222


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..++..+|++++|+|++++.+..+..++..+.+..     .|+++++||+|+...
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~-----~~~ivv~NK~Dl~~~  299 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEAG-----RALVIVVNKWDLVDE  299 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcC-----CcEEEEEECccCCCH
Confidence            23456779999999999888888877766655432     689999999999743

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.75  E-value=1.5e-17  Score=117.35  Aligned_cols=116  Identities=22%  Similarity=0.300  Sum_probs=85.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc----------------ccCCCCcceeeEEEEEE--EeCCcEEEEEeCCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMQRTV--LKDGQVVNVIDTPGLF   81 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~--~~~~~~~~~iDtpG~~   81 (174)
                      .++|+++|+.++|||||+++|++......                .....+.|.........  . ..+.+.++||||..
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGHE   81 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSSH
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeeccccccc
Confidence            47899999999999999999986542100                01112445555555554  4 78899999999986


Q ss_pred             CCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           82 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      +           +..........+|++++|+|+.+++...+.+.+..+....     .|+++++||+|+..
T Consensus        82 ~-----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~-----~p~ivvlNK~D~~~  136 (188)
T PF00009_consen   82 D-----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELG-----IPIIVVLNKMDLIE  136 (188)
T ss_dssp             H-----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT------SEEEEEETCTSSH
T ss_pred             c-----------eeecccceecccccceeeeecccccccccccccccccccc-----cceEEeeeeccchh
Confidence            4           3333334466779999999998899998888888776653     57999999999983

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.75  E-value=3.6e-17  Score=125.90  Aligned_cols=122  Identities=27%  Similarity=0.361  Sum_probs=97.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+++++|++++|||||+|+|++....-.. ..++.|++.-...+.. ++.++.++||.|+-++   .+.+.+.-.+..+.
T Consensus       218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVT-dI~GTTRDviee~i~i-~G~pv~l~DTAGiRet---~d~VE~iGIeRs~~  292 (454)
T COG0486         218 LKVVIIGRPNVGKSSLLNALLGRDRAIVT-DIAGTTRDVIEEDINL-NGIPVRLVDTAGIRET---DDVVERIGIERAKK  292 (454)
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCceEec-CCCCCccceEEEEEEE-CCEEEEEEecCCcccC---ccHHHHHHHHHHHH
Confidence            78999999999999999999998864332 4556677776667777 8999999999999964   46666777777777


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...++|.+++|+|++.+++..+...++    .....  +|+++|.||.|+..+
T Consensus       293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~----~~~~~--~~~i~v~NK~DL~~~  339 (454)
T COG0486         293 AIEEADLVLFVLDASQPLDKEDLALIE----LLPKK--KPIIVVLNKADLVSK  339 (454)
T ss_pred             HHHhCCEEEEEEeCCCCCchhhHHHHH----hcccC--CCEEEEEechhcccc
Confidence            888999999999999677777777766    21222  689999999999876

>cd01878 HflX HflX subfamily

Probab=99.74  E-value=9.2e-17  Score=114.63  Aligned_cols=126  Identities=25%  Similarity=0.225  Sum_probs=80.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+|+++|++|||||||+|.+++.......  ....|.........+.....+.++||||+.+...  ......+...+ .
T Consensus        42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~-~  116 (204)
T cd01878          42 PTVALVGYTNAGKSTLFNALTGADVYAED--QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRSTL-E  116 (204)
T ss_pred             CeEEEECCCCCCHHHHHHHHhcchhccCC--ccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHHH-H
Confidence            79999999999999999999997632221  1223333333344443334899999999865321  22222233322 2


Q ss_pred             ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+..+|++++|+|++++..... ..+.+.+.......  .|+++|+||+|+...
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~~~  168 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLLDD  168 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccCCh
Confidence            4567899999999985544443 34455555442222  689999999999765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.74  E-value=1.8e-16  Score=123.55  Aligned_cols=135  Identities=20%  Similarity=0.172  Sum_probs=88.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      .|+++|.++||||||+|+|++..+- .+ ..+..|.......+.+.+...+.++|+||+.........+..++.+.+.  
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~k-Ia-~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhie--  235 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPK-IA-NYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIE--  235 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCc-cc-cCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHh--
Confidence            6999999999999999999987632 21 2334455555555555336789999999998754444445555555544  


Q ss_pred             cCCceEEEEEEeCCCC--CCHH--HHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624          102 KDGIHAVLVVFSVRSR--FSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  163 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~--~~~~--~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~  163 (174)
                        +++++++|+|+++.  -++.  ...+.+.|..+......+|.++|+||+|+... ...++++.+
T Consensus       236 --r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-~e~l~~l~~  298 (424)
T PRK12297        236 --RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-EENLEEFKE  298 (424)
T ss_pred             --hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-HHHHHHHHH
Confidence              45999999999732  1222  24455556554322234799999999997433 233444443

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.74  E-value=1.3e-16  Score=125.77  Aligned_cols=125  Identities=20%  Similarity=0.185  Sum_probs=87.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+++++|.+|+|||||+|+|++....... ...+.|.........+ ++..+.++||||+.+.....+.+.........
T Consensus       172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~  249 (429)
T TIGR03594       172 PIKIAIIGRPNVGKSTLVNALLGEERVIVS-DIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL  249 (429)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCeeecC-CCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence            478999999999999999999987633222 2234444443344444 66789999999998754333222222222223


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                      .++..+|++++|+|++++.+..+..++..+.+.   .  .|+++|+||+|+.
T Consensus       250 ~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~---~--~~iiiv~NK~Dl~  296 (429)
T TIGR03594       250 KAIERADVVLLVLDATEGITEQDLRIAGLILEA---G--KALVIVVNKWDLV  296 (429)
T ss_pred             HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc---C--CcEEEEEECcccC
Confidence            356778999999999988888887776655443   1  6899999999998

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.74  E-value=7.8e-17  Score=111.04  Aligned_cols=118  Identities=19%  Similarity=0.176  Sum_probs=76.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      +|+++|++|+|||||++++++.......  ................ ....+.++||||...           +......
T Consensus         2 ki~~vG~~~vGKTsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~~   68 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCEGRFVSKY--LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-----------YLEVRNE   68 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEECCeEEEEEEEECCccHH-----------HHHHHHH
Confidence            7899999999999999999987643221  1111111122222221 234678999999864           2233444


Q ss_pred             ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh---hhcCcEEEEEeCcCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK---KIFDYMIVVFTGGDELE  152 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~---~~~~~~~iv~tk~D~~~  152 (174)
                      .+.++|++++|+|.+++-+... ..++..+......   ....|+++|.||+|+..
T Consensus        69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  124 (168)
T cd04119          69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK  124 (168)
T ss_pred             HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence            5678899999999985433222 4566666665432   12368999999999873

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01864 Rab19 Rab19 subfamily

Probab=99.73  E-value=7.7e-17  Score=111.23  Aligned_cols=119  Identities=12%  Similarity=0.142  Sum_probs=78.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+|+++|++|+|||||++++.+.......  ....+.........+ ++  ..+.++||||...           +...
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~~   68 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQ--GNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQER-----------FRTI   68 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccC--CCccceEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHH
Confidence            378999999999999999999875532221  111222233333444 33  3678999999653           3334


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ....+..+|++++++|.++.-+... ..++..+......  ..|+++|.||+|+...+
T Consensus        69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~Dl~~~~  124 (165)
T cd01864          69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGAS--NVVLLLIGNKCDLEEQR  124 (165)
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEECccccccc
Confidence            4455678899999999985433333 4666666554222  25899999999997553

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.73  E-value=2.3e-16  Score=119.89  Aligned_cols=127  Identities=20%  Similarity=0.189  Sum_probs=82.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      -.|+++|.++||||||+|+|++..+. .. ..+..|.......+.+.+...+.++||||+.+.......+...+.+.+. 
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~-va-~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhie-  234 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPK-IA-DYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIE-  234 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCcc-cc-CCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHH-
Confidence            35899999999999999999986531 11 2223444444445555233789999999998754443345555555543 


Q ss_pred             ccCCceEEEEEEeCCCC-C-CHH-H-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSR-F-SQE-E-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~-~-~~~-~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                         +++++++|+|+++. . +.. + ..+.+.+..+......+|+++|+||+|+...
T Consensus       235 ---rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~  288 (329)
T TIGR02729       235 ---RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE  288 (329)
T ss_pred             ---hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence               45999999999732 1 122 2 3444555544222234699999999999765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.73  E-value=1.1e-16  Score=113.36  Aligned_cols=116  Identities=17%  Similarity=0.252  Sum_probs=77.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc-ccccc-------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR-AFKSR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   86 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~   86 (174)
                      ++|+++|.+|+|||||++++++.. .+...             ....+.+.........+ +...+.++||||..+    
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~----   77 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHAD----   77 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHH----
Confidence            689999999999999999998621 11111             01122333333344445 677899999999875    


Q ss_pred             hHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           87 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                             +......++..+|++++|+|+++........++..+..   ..  .|+++++||+|+...
T Consensus        78 -------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~~--~p~iiv~NK~Dl~~~  132 (194)
T cd01891          78 -------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---LG--LKPIVVINKIDRPDA  132 (194)
T ss_pred             -------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---cC--CCEEEEEECCCCCCC
Confidence                   33344445677899999999986554544444443322   22  589999999999754

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.73  E-value=1.1e-16  Score=118.69  Aligned_cols=116  Identities=17%  Similarity=0.228  Sum_probs=84.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcc--ccc--------------ccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRA--FKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~--~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      .|+++|+.|+|||||+++|+....  ...              .....+.|.........| ++..+.++||||..+   
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~d---   76 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVD---   76 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHH---
Confidence            379999999999999999963211  000              112335667777777777 788899999999875   


Q ss_pred             ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                              +...+..++..+|++++|+|+.++....+...++.+....     .|+++++||+|+.+.+
T Consensus        77 --------f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~-----~p~ivviNK~D~~~a~  132 (270)
T cd01886          77 --------FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYN-----VPRIAFVNKMDRTGAD  132 (270)
T ss_pred             --------HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcC-----CCEEEEEECCCCCCCC
Confidence                    2223334555669999999998788888777776665432     5889999999997653

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01865 Rab3 Rab3 subfamily

Probab=99.73  E-value=1.2e-16  Score=110.31  Aligned_cols=118  Identities=12%  Similarity=0.073  Sum_probs=75.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+++++|+.|+|||||++.+++........  ...+........... ....+.+|||||..+           +.....
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~-----------~~~~~~   68 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFV--STVGIDFKVKTVFRNDKRVKLQIWDTAGQER-----------YRTITT   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeEEEEEEEEECCEEEEEEEEECCChHH-----------HHHHHH
Confidence            589999999999999999999876422211  111112222222221 124688999999764           333345


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+..+|++++|+|.++.-+... ..|++.+......  ..|+++|.||+|+...
T Consensus        69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~Dl~~~  121 (165)
T cd01865          69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVILVGNKCDMEDE  121 (165)
T ss_pred             HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCCEEEEEECcccCcc
Confidence            56788999999999974422222 4555555443222  2689999999999754

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.73  E-value=1.7e-16  Score=121.54  Aligned_cols=126  Identities=25%  Similarity=0.206  Sum_probs=83.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+|+++|.+|+|||||+|+|++......  ...+.|.......+.+..+..+.++||||+.+.  ..+.....+...+ .
T Consensus       190 ~~ValvG~~NvGKSSLln~L~~~~~~v~--~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~--l~~~lie~f~~tl-e  264 (351)
T TIGR03156       190 PTVALVGYTNAGKSTLFNALTGADVYAA--DQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAFRATL-E  264 (351)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCceeec--cCCccccCCEEEEEEeCCCceEEEEecCccccc--CCHHHHHHHHHHH-H
Confidence            7899999999999999999999763211  223444444445555545678999999999542  1233333343333 3


Q ss_pred             ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+..+|++++|+|++++..... ..+.+.+.+. +. ...|+++|+||+|+...
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~  316 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE  316 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh
Confidence            4678899999999985554443 2334444443 21 12689999999999754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.73  E-value=3.3e-16  Score=129.99  Aligned_cols=124  Identities=23%  Similarity=0.232  Sum_probs=92.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|.+|+|||||+|.|++....... ...+.|.........+ .+..+.+|||||+....   +.+...+.....
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~  349 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV---EGIDSAIASQAQ  349 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC---ccHHHHHHHHHH
Confidence            478999999999999999999987532222 2344555554445555 67789999999987422   234555666666


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .++..+|++++|+|++++++..+..+.+.++..     ..|+++|+||+|+...
T Consensus       350 ~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~~~  398 (712)
T PRK09518        350 IAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQAS  398 (712)
T ss_pred             HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECcccccc
Confidence            677888999999999878888888887777642     2699999999998654

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.72  E-value=1.6e-16  Score=109.64  Aligned_cols=119  Identities=14%  Similarity=0.054  Sum_probs=75.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccccc--CCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRA--SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      +|+++|++|+|||||++.|++......+.  .....|.........+ .+..+.++||||..+           +...+.
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~   68 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES-----------LRSLWD   68 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence            47899999999999999998754321111  1123344444445555 577899999999875           333444


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+.++|++++|+|.++.-.... ..++..+.+... ....|+++++||+|+...
T Consensus        69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~~~  122 (167)
T cd04160          69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLPDA  122 (167)
T ss_pred             HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEccccccC
Confidence            56778899999999874322111 222222222111 123699999999998654

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.72  E-value=1.6e-16  Score=109.97  Aligned_cols=117  Identities=18%  Similarity=0.150  Sum_probs=75.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|++|+|||||++.+++........  ...........+.+ .+  ..+.++||||...           +....
T Consensus         4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~--~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~-----------~~~~~   69 (167)
T cd01867           4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFI--STIGIDFKIRTIEL-DGKKIKLQIWDTAGQER-----------FRTIT   69 (167)
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCcCCcccc--cCccceEEEEEEEE-CCEEEEEEEEeCCchHH-----------HHHHH
Confidence            789999999999999999999876322211  11112222223333 22  3578999999654           22233


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|.+++.+... ..++..+......  ..|++++.||+|+.+.
T Consensus        70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~iiv~nK~Dl~~~  123 (167)
T cd01867          70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASE--DVERMLVGNKCDMEEK  123 (167)
T ss_pred             HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEECcccccc
Confidence            445678899999999985433332 4455555543222  2589999999999754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.72  E-value=2.6e-16  Score=108.73  Aligned_cols=124  Identities=23%  Similarity=0.188  Sum_probs=75.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChH-HHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE-FVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~-~~~~~~~~~~~   99 (174)
                      ++|+++|.+|+|||||+|++++.... .. .....|.........+ ++..+.++||||+.+...... ........   
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~-~~-~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~---   74 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VA-PYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAIT---   74 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCc-cC-CCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHHH---
Confidence            47899999999999999999997642 11 1122344344434434 567899999999865321111 11111111   


Q ss_pred             hccCCceEEEEEEeCCCCCC--HH-HHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFS--QE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~--~~-~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ......|++++|+|+++...  .. ...+++.+....   ...|+++|+||+|+...
T Consensus        75 ~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~  128 (168)
T cd01897          75 ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF---KNKPVIVVLNKIDLLTF  128 (168)
T ss_pred             HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc---CcCCeEEEEEccccCch
Confidence            11123588999999975432  12 244555555432   13699999999999765

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.72  E-value=1.5e-16  Score=111.66  Aligned_cols=115  Identities=18%  Similarity=0.169  Sum_probs=79.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccC--------------CCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRAS--------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS   87 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~   87 (174)
                      +|+++|.+|+|||||+|+|++.........              ..+.+.........+ ....+.++||||+.+     
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~-----   74 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHED-----   74 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHH-----
Confidence            489999999999999999998764322100              112333333344444 466789999999764     


Q ss_pred             HHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           88 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                            +...+..++..+|++++|+|..+.......+.+..+...     ..|+++++||+|+..+
T Consensus        75 ------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~~i~iv~nK~D~~~~  129 (189)
T cd00881          75 ------FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREG-----GLPIIVAINKIDRVGE  129 (189)
T ss_pred             ------HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHC-----CCCeEEEEECCCCcch
Confidence                  222333344577999999999877766666666555441     2699999999999863

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.72  E-value=1.7e-17  Score=119.91  Aligned_cols=126  Identities=25%  Similarity=0.235  Sum_probs=84.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+..++++|.+|+|||||+|+|.+......  ...+.++....+.........+.+|||||+.++..    ..++.+..+
T Consensus        38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v--~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~----~D~~~r~~~  111 (296)
T COG3596          38 EPVNVLLMGATGAGKSSLINALFQGEVKEV--SKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKD----KDAEHRQLY  111 (296)
T ss_pred             CceeEEEecCCCCcHHHHHHHHHhccCcee--eecccCCCchhhHHhhccccceEEecCCCcccchh----hhHHHHHHH
Confidence            347888999999999999999996442211  11111121111112222567899999999998543    333455555


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+++.|.+++++++.++.-..+.++++.+.-.. .+  +++++++|++|...+
T Consensus       112 ~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~-~~--~~~i~~VtQ~D~a~p  163 (296)
T COG3596         112 RDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG-LD--KRVLFVVTQADRAEP  163 (296)
T ss_pred             HHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc-cC--ceeEEEEehhhhhcc
Confidence            55666779999999998776666666655555542 22  589999999999876

>cd04122 Rab14 Rab14 subfamily

Probab=99.72  E-value=1.9e-16  Score=109.38  Aligned_cols=116  Identities=15%  Similarity=0.153  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE--EEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+|+++|+.|+|||||++.+.+.......    ..|....+  ....... ...+.++||||...           +...
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~   67 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMADC----PHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER-----------FRAV   67 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCC----CcccceeEEEEEEEECCEEEEEEEEECCCcHH-----------HHHH
Confidence            58999999999999999999976532221    12222221  1222211 23578999999764           3334


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+.++|++++|+|.+++-+... ..+++.+......  ..|+++|.||+|+...
T Consensus        68 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iiiv~nK~Dl~~~  122 (166)
T cd04122          68 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIFLIGNKADLEAQ  122 (166)
T ss_pred             HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence            4456778899999999985433332 4555544443222  2589999999998654

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01861 Rab6 Rab6 subfamily

Probab=99.72  E-value=1.9e-16  Score=108.66  Aligned_cols=116  Identities=14%  Similarity=0.127  Sum_probs=75.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      +|+++|++|+|||||++++++......  .....+.........+ .+  ..+.+|||||...           +.....
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~~   67 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLIP   67 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHHH
Confidence            789999999999999999998764322  1222222222233333 22  3588999999654           333344


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+..+|++++|+|.+++-+... ..++..+....+.  ..|+++++||+|+...
T Consensus        68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~~  120 (161)
T cd01861          68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSDK  120 (161)
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhcccc
Confidence            45678899999999985433333 3455544443222  2689999999999543

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01866 Rab2 Rab2 subfamily

Probab=99.72  E-value=2.1e-16  Score=109.50  Aligned_cols=118  Identities=14%  Similarity=0.118  Sum_probs=74.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+|+++|++|+|||||++.+++...........+  ........... ....+.++||||...           +.....
T Consensus         5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~   71 (168)
T cd01866           5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--VEFGARMITIDGKQIKLQIWDTAGQES-----------FRSITR   71 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--eeEEEEEEEECCEEEEEEEEECCCcHH-----------HHHHHH
Confidence            6899999999999999999998764322211111  21111222221 124678999999653           333344


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+|++++|+|.+++-+... ..|+..++.....  ..|+++|.||.|+...
T Consensus        72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pvivv~nK~Dl~~~  124 (168)
T cd01866          72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNS--NMTIMLIGNKCDLESR  124 (168)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccccc
Confidence            55678899999999984332222 3444444443211  2589999999999743

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.72  E-value=3.5e-16  Score=123.05  Aligned_cols=122  Identities=20%  Similarity=0.242  Sum_probs=82.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+++++|++|+|||||+|+|++....... ...+.|.......+.+ ++..+.++||||+.+..   +...+........
T Consensus       204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs-~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~---~~ie~~gi~~~~~  278 (442)
T TIGR00450       204 FKLAIVGSPNVGKSSLLNALLKQDRAIVS-DIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHA---DFVERLGIEKSFK  278 (442)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccch---hHHHHHHHHHHHH
Confidence            78999999999999999999987532222 2344455544445555 67788999999997632   2222222223334


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+..+|++++|+|.+++.+..+. ++..+..   ..  .|+++|+||+|+...
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~---~~--~piIlV~NK~Dl~~~  325 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF-LIIDLNK---SK--KPFILVLNKIDLKIN  325 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH-HHHHHhh---CC--CCEEEEEECccCCCc
Confidence            56788999999999866655544 4433322   12  689999999998654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04113 Rab4 Rab4 subfamily

Probab=99.72  E-value=1.5e-16  Score=109.26  Aligned_cols=117  Identities=16%  Similarity=0.186  Sum_probs=75.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      +++++|++|+|||||++.+++........  ...+............ ...+.++||||...           +......
T Consensus         2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~~~~~   68 (161)
T cd04113           2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQ--HTIGVEFGSKIIRVGGKRVKLQIWDTAGQER-----------FRSVTRS   68 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCCC--CceeeeEEEEEEEECCEEEEEEEEECcchHH-----------HHHhHHH
Confidence            78999999999999999999876432211  1112222222222211 24678999999764           2333344


Q ss_pred             ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+..+|++++|+|.++..+... ..++..++......  .|++++.||+|+...
T Consensus        69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~  120 (161)
T cd04113          69 YYRGAAGALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLADQ  120 (161)
T ss_pred             HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcchh
Confidence            5678899999999985444333 45555555443223  589999999998753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.72  E-value=3.8e-16  Score=123.32  Aligned_cols=126  Identities=17%  Similarity=0.126  Sum_probs=82.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      -.|+|+|.++||||||+|+|++..+. . ...+..|.......+.+ .+..+.++||||+.+.......+..++.+.+  
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpk-I-adypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLrhi--  234 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPK-I-ADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLRHI--  234 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCcc-c-cccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHHHH--
Confidence            45999999999999999999987532 2 12344555555555555 6678999999999875444444555555544  


Q ss_pred             ccCCceEEEEEEeCCCCC---CH-HH-HHHHHHHHHHHh---------hhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRF---SQ-EE-EAALHSLQTLFG---------KKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~---~~-~~-~~~l~~l~~~~~---------~~~~~~~~iv~tk~D~~~~  153 (174)
                        .++|++++|+|+++..   ++ .+ ..+.+.|..+..         ....+|.++|+||+|+...
T Consensus       235 --eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da  299 (500)
T PRK12296        235 --ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA  299 (500)
T ss_pred             --HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh
Confidence              4459999999997311   11 11 233334444332         1123699999999999754

>cd01868 Rab11_like Rab11-like

Probab=99.72  E-value=2.1e-16  Score=108.97  Aligned_cols=117  Identities=20%  Similarity=0.171  Sum_probs=75.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+++++|++|+|||||++.+++......  ..+..+.......... .+  ..+.++||||...           +....
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~   69 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNEFNLD--SKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQER-----------YRAIT   69 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHHHH
Confidence            6899999999999999999998763211  1122222222222333 22  3578999999754           33333


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..++++++|+|.++..+... .+++..+.+....  ..|+++|.||+|+...
T Consensus        70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pi~vv~nK~Dl~~~  123 (165)
T cd01868          70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADS--NIVIMLVGNKSDLRHL  123 (165)
T ss_pred             HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence            445677899999999984433333 3455555554322  2589999999998654

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.72  E-value=1.7e-16  Score=113.69  Aligned_cols=116  Identities=15%  Similarity=0.149  Sum_probs=77.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------ccCCCCcceeeEEEEEEEeCCcEE
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLKDGQVV   72 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~~~~   72 (174)
                      +|+++|+.|+|||||+++|+.......                             .....+.|.........+ ++..+
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence            589999999999999999975432111                             001134455555555556 67789


Q ss_pred             EEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           73 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        73 ~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      .++||||+.+           +...+...+..+|++++|+|++++....+......+... +   .+++++|+||+|+..
T Consensus        80 ~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~-~---~~~iIvviNK~D~~~  144 (208)
T cd04166          80 IIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLL-G---IRHVVVAVNKMDLVD  144 (208)
T ss_pred             EEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHc-C---CCcEEEEEEchhccc
Confidence            9999999754           222222345678999999999877666665554444332 1   136788999999975


Q ss_pred             C
Q 030624          153 D  153 (174)
Q Consensus       153 ~  153 (174)
                      .
T Consensus       145 ~  145 (208)
T cd04166         145 Y  145 (208)
T ss_pred             C
Confidence            4

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd00154 Rab Rab family

Probab=99.71  E-value=1.9e-16  Score=107.81  Aligned_cols=113  Identities=19%  Similarity=0.182  Sum_probs=74.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE--EEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +|+++|++|+|||||+|.+.+.......    ..|......  ..... ....+.++|+||...           +....
T Consensus         2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~   66 (159)
T cd00154           2 KIVLIGDSGVGKTSLLLRFVDGKFDENY----KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-----------FRSIT   66 (159)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCcCCCcc----CCceeeeeEEEEEEECCEEEEEEEEecCChHH-----------HHHHH
Confidence            7899999999999999999987754331    122222222  22221 235678999999854           33345


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                      ..++..+|++++++|.+++-+... ..++..+......  ..|+++++||+|+.
T Consensus        67 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~  118 (159)
T cd00154          67 PSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPE--NIPIILVGNKIDLE  118 (159)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEccccc
Confidence            556677899999999984322222 3455555554322  26999999999996

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04124 RabL2 RabL2 subfamily

Probab=99.71  E-value=1.6e-16  Score=109.40  Aligned_cols=115  Identities=19%  Similarity=0.148  Sum_probs=74.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      +|+++|.+|+|||||++.+++.............+.  ........ ....+.+|||||...           +......
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~~   68 (161)
T cd04124           2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTL--YKHNAKFEGKTILVDFWDTAGQER-----------FQTMHAS   68 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEE--EEEEEEECCEEEEEEEEeCCCchh-----------hhhhhHH
Confidence            689999999999999999987653222111111111  11112221 223578999999765           3344455


Q ss_pred             ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      .+.++|++++|+|.+++.+..+ ..+++.+.+.. ..  .|++++.||+|+..
T Consensus        69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~--~p~ivv~nK~Dl~~  118 (161)
T cd04124          69 YYHKAHACILVFDVTRKITYKNLSKWYEELREYR-PE--IPCIVVANKIDLDP  118 (161)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CC--CcEEEEEECccCch
Confidence            6788899999999985544333 45666665532 12  59999999999853

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.71  E-value=1.9e-15  Score=107.03  Aligned_cols=125  Identities=18%  Similarity=0.266  Sum_probs=77.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ..++|+++|.+|+|||||+|+|++...........+.|.......    .+..+.++||||+........ ....+....
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~-~~~~~~~~~   97 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKE-EKEKWQKLI   97 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCch-HHHHHHHHH
Confidence            448899999999999999999998642112112223333332221    246789999999875432221 111222222


Q ss_pred             ---HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 ---GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ---~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                         ......++++++++|.+.+....+....+.+...     ..+++++.||+|+...
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~-----~~~~iiv~nK~Dl~~~  150 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEY-----GIPVLIVLTKADKLKK  150 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHc-----CCcEEEEEECcccCCH
Confidence               1233456788888988766666665555555332     2578999999999764

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.71  E-value=4.4e-16  Score=123.90  Aligned_cols=126  Identities=21%  Similarity=0.290  Sum_probs=85.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ...+++++|.+|+|||||+|+|++....... ...+.|.......+.+ ++..+.++||||+.......  ...+.....
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s-~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~--~~~e~~~~~  285 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVD-DVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQA--SGHEYYASL  285 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCccCCcceEEEEE-CCEEEEEEECCCcccccccc--chHHHHHHH
Confidence            3489999999999999999999987632121 2334444443344445 66778999999986532211  111222222


Q ss_pred             --HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 --GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 --~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                        ..++..+|++++|+|++++.+..+..++..+.+.   .  .|+++|+||+|+...
T Consensus       286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~---~--~piIiV~NK~Dl~~~  337 (472)
T PRK03003        286 RTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA---G--RALVLAFNKWDLVDE  337 (472)
T ss_pred             HHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEECcccCCh
Confidence              2245788999999999988888777666555432   2  699999999999754

>cd04149 Arf6 Arf6 subfamily

Probab=99.71  E-value=5.2e-16  Score=107.59  Aligned_cols=114  Identities=16%  Similarity=0.151  Sum_probs=74.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|.+|+|||||++.+...... ..    .+|.......... .+..+.++||||...           +...+.
T Consensus         9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-~~----~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~   71 (168)
T cd04149           9 EMRILMLGLDAAGKTTILYKLKLGQSV-TT----IPTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLWR   71 (168)
T ss_pred             ccEEEEECcCCCCHHHHHHHHccCCCc-cc----cCCcccceEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence            379999999999999999999865432 11    1222222333334 567899999999865           334445


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh--hcCcEEEEEeCcCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE  152 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~~  152 (174)
                      .++.++|++++|+|++++.....  ..+.+.+.....  ...|+++|.||+|+.+
T Consensus        72 ~~~~~a~~ii~v~D~t~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  124 (168)
T cd04149          72 HYYTGTQGLIFVVDSADRDRIDE--ARQELHRIINDREMRDALLLVFANKQDLPD  124 (168)
T ss_pred             HHhccCCEEEEEEeCCchhhHHH--HHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence            56788999999999985432222  222233332211  1258999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.71  E-value=3.6e-16  Score=107.90  Aligned_cols=118  Identities=17%  Similarity=0.171  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+++++|++|+|||||++.+++......  .....+........... ....+.++||||...           +.....
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~~   69 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIELDGKTIKLQIWDTAGQER-----------FRTITS   69 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEECCEEEEEEEEECCCcHh-----------HHHHHH
Confidence            6899999999999999999997653221  11222222222223331 123578999999664           333334


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+..+|++++|+|.++.-+... ..++..+......  ..|++++.||+|+...
T Consensus        70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~  122 (166)
T cd01869          70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTDK  122 (166)
T ss_pred             HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEEChhcccc
Confidence            45678899999999985332222 3455555444212  2589999999998654

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04154 Arl2 Arl2 subfamily

Probab=99.71  E-value=4.1e-16  Score=108.50  Aligned_cols=117  Identities=15%  Similarity=0.162  Sum_probs=75.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ...+++++|++|+|||||++++.+.... .    ...|.........+ +...+.++||||...           +...+
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~----~~~t~g~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~~   75 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGEDID-T----ISPTLGFQIKTLEY-EGYKLNIWDVGGQKT-----------LRPYW   75 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCC-C----cCCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence            3478999999999999999999987431 1    11222223333444 567789999999764           23334


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|.+++-.... ..++..+.... .....|+++|+||+|+...
T Consensus        76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~  130 (173)
T cd04154          76 RNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEE-RLAGATLLILANKQDLPGA  130 (173)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECcccccC
Confidence            455678899999999985422222 23333332211 1123699999999998754

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04157 Arl6 Arl6 subfamily

Probab=99.71  E-value=5.1e-16  Score=106.52  Aligned_cols=117  Identities=14%  Similarity=0.053  Sum_probs=74.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      +|+++|++|+|||||++.+++...+...   ..+|.........+ .+..+.++||||..+           +...+..+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~---~~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~~~   65 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQI---IVPTVGFNVESFEK-GNLSFTAFDMSGQGK-----------YRGLWEHY   65 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcce---ecCccccceEEEEE-CCEEEEEEECCCCHh-----------hHHHHHHH
Confidence            4789999999999999999986432121   11222222223333 567889999999875           33344455


Q ss_pred             cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHh-hhhcCcEEEEEeCcCCCCC
Q 030624          102 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-KKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~~iv~tk~D~~~~  153 (174)
                      +..+|++++|+|.+++.+... ..+++.+.+... .....|+++++||+|+...
T Consensus        66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~  119 (162)
T cd04157          66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA  119 (162)
T ss_pred             HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence            678899999999985443222 334443333110 0123699999999999754

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd01850 CDC_Septin CDC/Septin

Probab=99.70  E-value=8e-16  Score=114.39  Aligned_cols=129  Identities=20%  Similarity=0.271  Sum_probs=82.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeeEEEEEEEe-CC--cEEEEEeCCCCCCCCCChHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGSEF   89 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~-~~--~~~~~iDtpG~~~~~~~~~~   89 (174)
                      -..+|+++|++|+|||||+|+|++.........      ....|........... ++  ..+.++||||+.++......
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            347899999999999999999998775433211      1223332222222221 23  36899999999986532221


Q ss_pred             H-------HHHHHHHH-------H---hccCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624           90 V-------GKEIVKCI-------G---MAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus        90 ~-------~~~~~~~~-------~---~~~~~~~~il~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                      +       ..++..++       +   ..-.++|+++|+++.+. ++...+.+.++.+...      .++++|+||+|++
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~------v~vi~VinK~D~l  156 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKR------VNIIPVIAKADTL  156 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhcc------CCEEEEEECCCcC
Confidence            1       11111111       1   11236899999998863 6777777777777652      5899999999997


Q ss_pred             CC
Q 030624          152 ED  153 (174)
Q Consensus       152 ~~  153 (174)
                      ..
T Consensus       157 ~~  158 (276)
T cd01850         157 TP  158 (276)
T ss_pred             CH
Confidence            64

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.70  E-value=4.1e-16  Score=107.17  Aligned_cols=117  Identities=21%  Similarity=0.154  Sum_probs=74.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+++++|++|+|||||+|++++...........+.+..  .....+. ....+.+||+||..+           +.....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~v~~~~~~~~~~i~D~~G~~~-----------~~~~~~   68 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFL--TQTVNLDDTTVKFEIWDTAGQER-----------YRSLAP   68 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE--EEEEEECCEEEEEEEEeCCchHH-----------HHHHHH
Confidence            58999999999999999999987743311111111111  1222221 234678999999653           233334


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ..+..+|++++|+|+++.-+... ..++..+......  ..|++++.||+|+..
T Consensus        69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~  120 (163)
T cd01860          69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASP--NIIIALVGNKADLES  120 (163)
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence            45677899999999984322222 4555555554322  258999999999874

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.70  E-value=7.6e-16  Score=107.30  Aligned_cols=116  Identities=16%  Similarity=0.093  Sum_probs=75.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|++|+|||||++.+++......     .+|.........+ ++..+.++||||...           +...+.
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~   77 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIVY-KNIRFLMWDIGGQES-----------LRSSWN   77 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCeEEEEEECCCCHH-----------HHHHHH
Confidence            47899999999999999999987653211     2233333344445 567899999999865           334444


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+.++|++++|+|.++.-.... ...+..+.+... ....|+++++||+|+...
T Consensus        78 ~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~~  131 (174)
T cd04153          78 TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKGA  131 (174)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCCC
Confidence            55678899999999984322211 222222221111 112699999999998653

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.70  E-value=8.4e-16  Score=105.59  Aligned_cols=113  Identities=15%  Similarity=0.097  Sum_probs=73.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      +|+++|..|+|||||++.+...... .    ..+|.........+ ....+.++||||..+           +...+..+
T Consensus         2 kv~~~G~~~~GKTsli~~l~~~~~~-~----~~pt~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~~   64 (159)
T cd04150           2 RILMVGLDAAGKTTILYKLKLGEIV-T----TIPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRHY   64 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCc-c----cCCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHH
Confidence            7899999999999999999654432 1    11222222333444 567899999999865           44445556


Q ss_pred             cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh--hcCcEEEEEeCcCCCCC
Q 030624          102 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED  153 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~~~  153 (174)
                      +.++|++++|+|.++..+...  ..+.+.+.....  ...|++++.||.|+.+.
T Consensus        65 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  116 (159)
T cd04150          65 FQNTQGLIFVVDSNDRERIGE--AREELQRMLNEDELRDAVLLVFANKQDLPNA  116 (159)
T ss_pred             hcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence            788999999999984322222  122222222111  12689999999998643

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PRK11058 GTPase HflX; Provisional

Probab=99.70  E-value=7.6e-16  Score=120.54  Aligned_cols=126  Identities=23%  Similarity=0.144  Sum_probs=82.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      ++|+++|.+|||||||+|+|++.... . ....+.|.........+.....+.++||||+.+.  ..+.....+... ..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v-~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~t-l~  272 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVY-A-ADQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKAT-LQ  272 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcee-e-ccCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHH-HH
Confidence            57999999999999999999987643 1 1223445544444555533347899999999652  123333334433 33


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+|++++|+|++++...... .+.+.+.+.....  .|+++|+||+|+...
T Consensus       273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~--~pvIiV~NKiDL~~~  324 (426)
T PRK11058        273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHE--IPTLLVMNKIDMLDD  324 (426)
T ss_pred             HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCC--CCEEEEEEcccCCCc
Confidence            56789999999999865443433 2334444432222  689999999999754

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.70  E-value=8e-16  Score=106.52  Aligned_cols=114  Identities=17%  Similarity=0.115  Sum_probs=74.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      +|+++|++|||||||++.+.+...  ..   ..+|.......... .+..+.++|+||...           +...+...
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~--~~---~~~t~g~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~   63 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIP--KK---VAPTVGFTPTKLRL-DKYEVCIFDLGGGAN-----------FRGIWVNY   63 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCC--cc---ccCcccceEEEEEE-CCEEEEEEECCCcHH-----------HHHHHHHH
Confidence            478999999999999999998621  11   11222222334444 567889999999754           34444556


Q ss_pred             cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          102 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +..+|++++|+|.++.-.... ..++..+.... .....|+++|.||.|+...
T Consensus        64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~~  115 (167)
T cd04161          64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHP-RVSGKPILVLANKQDKKNA  115 (167)
T ss_pred             HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCc-cccCCcEEEEEeCCCCcCC
Confidence            788899999999985432222 33444333321 1123699999999998765

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04140 ARHI_like ARHI subfamily

Probab=99.70  E-value=4.9e-16  Score=107.24  Aligned_cols=119  Identities=21%  Similarity=0.176  Sum_probs=76.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+|+++|.+|+|||||++.+++............ ........... ....+.++||||..+.           ......
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~~~~   68 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSK-NICTLQITDTTGSHQF-----------PAMQRL   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcch-heEEEEEEECC-EEEEEEEEECCCCCcc-----------hHHHHH
Confidence            6899999999999999999998764222111111 11111111111 2345789999998762           222233


Q ss_pred             ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhh-hcCcEEEEEeCcCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDELE  152 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~~iv~tk~D~~~  152 (174)
                      .+..+|++++|+|.++.-+... ..+++.+.+..+.. ...|+++|.||+|+..
T Consensus        69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  122 (165)
T cd04140          69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH  122 (165)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence            4567899999999985544433 55666666654322 2369999999999965

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.70  E-value=3.8e-16  Score=107.30  Aligned_cols=117  Identities=19%  Similarity=0.213  Sum_probs=75.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|++|+|||||++.+++......  .....+.......... .+  ..+.++|+||...           +....
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~   66 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQ--YKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQER-----------FRSIT   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence            3789999999999999999998764211  1122222222233333 23  4678999999653           22334


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|.++..+... ..|+..+......  ..|+++++||+|+...
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~--~~pivvv~nK~D~~~~  120 (164)
T smart00175       67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADP--NVVIMLVGNKSDLEDQ  120 (164)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcccc
Confidence            445677899999999985433333 3355544444322  2699999999998753

Rab GTPases are implicated in vesicle trafficking.

>cd04158 ARD1 ARD1 subfamily

Probab=99.70  E-value=7.4e-16  Score=106.87  Aligned_cols=114  Identities=16%  Similarity=0.067  Sum_probs=74.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      +++++|..|+|||||++++.+.... .    ..+|.........+ .+..+.++||||...           ....+...
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~----~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~-----------~~~~~~~~   63 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM-Q----PIPTIGFNVETVEY-KNLKFTIWDVGGKHK-----------LRPLWKHY   63 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC-C----cCCcCceeEEEEEE-CCEEEEEEECCCChh-----------cchHHHHH
Confidence            5789999999999999999986421 1    22333334444445 667899999999875           23334445


Q ss_pred             cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          102 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +..+|++++|+|.+++-...+ ..++..+.+... ....|++++.||+|+.+.
T Consensus        64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~  115 (169)
T cd04158          64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVAGA  115 (169)
T ss_pred             hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCcccC
Confidence            677899999999985422222 333333332111 112589999999998643

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.70  E-value=5.4e-16  Score=112.99  Aligned_cols=116  Identities=19%  Similarity=0.254  Sum_probs=80.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccc--ccc--------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAF--KSR--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~--~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      .|+++|+.|+|||||+++|+.....  ..|              ....+.+.........+ ++..+.++||||+.++  
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f--   77 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDF--   77 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccch--
Confidence            3789999999999999999754211  001              01123344445555666 7788999999999862  


Q ss_pred             ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                               ...+..++..+|++++|+|+.++.......+++.+...   .  .|+++++||+|+...+
T Consensus        78 ---------~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~---~--~P~iivvNK~D~~~a~  132 (237)
T cd04168          78 ---------IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL---N--IPTIIFVNKIDRAGAD  132 (237)
T ss_pred             ---------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEECccccCCC
Confidence                     22223344566999999999878777667776666543   1  5889999999998653

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.70  E-value=1.3e-15  Score=106.33  Aligned_cols=116  Identities=15%  Similarity=0.088  Sum_probs=75.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|..|+|||||++.+...... .    ..+|.........+ ++..+.++||||...           +...+.
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~----~~~t~~~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~~~   75 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGESV-T----TIPTIGFNVETVTY-KNISFTVWDVGGQDK-----------IRPLWR   75 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCC-C----cCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence            379999999999999999999644321 1    12233333334444 567899999999875           444455


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .++.++|++++|+|.+++-+... .+++..+..... ....|++++.||.|+.+.
T Consensus        76 ~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~~  129 (175)
T smart00177       76 HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDE-LRDAVILVFANKQDLPDA  129 (175)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHh-hcCCcEEEEEeCcCcccC
Confidence            56788999999999985422222 233322221100 112589999999998653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04155 Arl3 Arl3 subfamily

Probab=99.70  E-value=1.2e-15  Score=105.87  Aligned_cols=117  Identities=17%  Similarity=0.095  Sum_probs=74.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +..+++++|++|+|||||++++.+......     ..|.........+ .+..+.++|+||...           +...+
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~~~~   75 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IRPYW   75 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence            358999999999999999999998753211     1222223334444 567789999999754           33334


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|.++.-.... ..++..+..... ....|+++++||+|+.+.
T Consensus        76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~  130 (173)
T cd04155          76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLATA  130 (173)
T ss_pred             HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCccC
Confidence            445678899999999984321111 222222222111 122689999999998764

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04151 Arl1 Arl1 subfamily

Probab=99.69  E-value=6e-16  Score=106.06  Aligned_cols=113  Identities=13%  Similarity=0.039  Sum_probs=73.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      +++++|++|+|||||++.+........     .+|.........+ .+..+.++||||..+           +...+..+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~~   63 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGQTS-----------IRPYWRCY   63 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCc-----CCccCcCeEEEEE-CCEEEEEEECCCCHH-----------HHHHHHHH
Confidence            579999999999999999976553211     1232233334444 567899999999875           33444556


Q ss_pred             cCCceEEEEEEeCCCCCCHH--HHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          102 KDGIHAVLVVFSVRSRFSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +..+|++++|+|+++.....  ...+...+++..  ....|+++++||+|+.+.
T Consensus        64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~  115 (158)
T cd04151          64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEE--LKGAVLLVFANKQDMPGA  115 (158)
T ss_pred             hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchh--hcCCcEEEEEeCCCCCCC
Confidence            67899999999998432221  122222222211  123699999999998754

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.69  E-value=7.1e-16  Score=109.57  Aligned_cols=120  Identities=20%  Similarity=0.208  Sum_probs=77.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcc-eeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVT-STCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+|+++|++|+|||||+|+|++...+..+....+.. .......+.......+.++||||+.+.....+    ++.+.  
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~----~~l~~--   75 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPD----DYLEE--   75 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHH----HHHHH--
Confidence            579999999999999999999976543332222210 01111111111234689999999986433322    22222  


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+.++|+++++.+  ++++..+..+++.+++..     .++++|+||+|+..+
T Consensus        76 ~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~-----~~~ilV~nK~D~~~~  122 (197)
T cd04104          76 MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMG-----KKFYFVRTKVDRDLS  122 (197)
T ss_pred             hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhC-----CCEEEEEecccchhh
Confidence            23567788888743  378888888888887752     589999999999643

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.69  E-value=5.4e-16  Score=107.74  Aligned_cols=122  Identities=19%  Similarity=0.136  Sum_probs=73.8

Q ss_pred             EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccC
Q 030624           25 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD  103 (174)
Q Consensus        25 i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~  103 (174)
                      ++|++|||||||+|+|++.... .+ .....|.........+ + ...+.++||||+.+.....+.....+..    .+.
T Consensus         1 iiG~~~~GKStll~~l~~~~~~-~~-~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~----~~~   73 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPK-VA-NYPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFLA----HIR   73 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCcc-cc-CCCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHHH----HHh
Confidence            5899999999999999997641 11 1223333333334444 4 7789999999986532222222222222    344


Q ss_pred             CceEEEEEEeCCCCC-----CHH-H-HHHHHHHHHHHhh-----hhcCcEEEEEeCcCCCCC
Q 030624          104 GIHAVLVVFSVRSRF-----SQE-E-EAALHSLQTLFGK-----KIFDYMIVVFTGGDELED  153 (174)
Q Consensus       104 ~~~~il~v~~~~~~~-----~~~-~-~~~l~~l~~~~~~-----~~~~~~~iv~tk~D~~~~  153 (174)
                      .+|++++|+|+.+..     ... + ..+...+......     ....|+++|+||+|+...
T Consensus        74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~  135 (176)
T cd01881          74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA  135 (176)
T ss_pred             ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence            579999999998442     222 2 2233333322111     123699999999999765

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.69  E-value=9.2e-16  Score=107.86  Aligned_cols=118  Identities=10%  Similarity=0.037  Sum_probs=74.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+..+++++|.+|+|||||++.+.+.... ..    .+|.......... .+..+.++|+||...           ....
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~----~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~   77 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QH----QPTQHPTSEELAI-GNIKFTTFDLGGHQQ-----------ARRL   77 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCc-cc----CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence            34489999999999999999999986431 11    1222222233333 567889999999864           3334


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +..++..+|++++|+|+++.-.... ...+..+.+.. .....|+++++||+|+...
T Consensus        78 ~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~~  133 (184)
T smart00178       78 WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDE-ELATVPFLILGNKIDAPYA  133 (184)
T ss_pred             HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcCh-hhcCCCEEEEEeCccccCC
Confidence            4456778999999999984311111 22222222211 1123699999999998643

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.69  E-value=1.2e-15  Score=104.51  Aligned_cols=114  Identities=13%  Similarity=0.046  Sum_probs=72.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      +|+++|++|+|||||++.+.+......     .+|............+..+.++||||...           +...+...
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~   64 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-----IPTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY   64 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-----cCccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence            479999999999999999998764321     12222223333332456799999999764           33334445


Q ss_pred             cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          102 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      +..+|++++|+|.++..+... ..++..+..... ....|+++|+||+|+..
T Consensus        65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~  115 (160)
T cd04156          65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEH-IKGVPVVLLANKQDLPG  115 (160)
T ss_pred             hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECccccc
Confidence            677899999999985432222 222222222111 12369999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.69  E-value=7.2e-16  Score=106.96  Aligned_cols=119  Identities=15%  Similarity=0.094  Sum_probs=75.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHH-HHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIV-KCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~-~~~   98 (174)
                      .+|+++|++|+|||||++++++.......  ..............+.. ...+.+|||||..+           +. ...
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~   69 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCAGRFPERT--EATIGVDFRERTVEIDGERIKVQLWDTAGQER-----------FRKSMV   69 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCcc--ccceeEEEEEEEEEECCeEEEEEEEeCCChHH-----------HHHhhH
Confidence            68999999999999999999876532221  11111112222233311 24688999999764           22 123


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|.+++-+... ..|++.+...... ...|+++|.||+|+...
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~  124 (170)
T cd04115          70 QHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLP-NEVPRILVGNKCDLREQ  124 (170)
T ss_pred             HHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCC-CCCCEEEEEECccchhh
Confidence            445678899999999985444433 4555555544221 23699999999998654

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04123 Rab21 Rab21 subfamily

Probab=99.69  E-value=8e-16  Score=105.36  Aligned_cols=117  Identities=14%  Similarity=0.098  Sum_probs=74.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      +++++|+.|+|||||+|++++.......  ....+.........+. ....+.++|+||...           +......
T Consensus         2 ki~i~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~~~~~   68 (162)
T cd04123           2 KVVLLGEGRVGKTSLVLRYVENKFNEKH--ESTTQASFFQKTVNIGGKRIDLAIWDTAGQER-----------YHALGPI   68 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCc--CCccceeEEEEEEEECCEEEEEEEEECCchHH-----------HHHhhHH
Confidence            7899999999999999999987643221  1111111222222221 123688999999653           2223334


Q ss_pred             ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+..+|++++|+|.+++-.... ..+++.+......  ..|+++++||+|+...
T Consensus        69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~  120 (162)
T cd04123          69 YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQ  120 (162)
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence            4567899999999975433332 3455555555433  3689999999998753

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.69  E-value=1.1e-15  Score=108.86  Aligned_cols=115  Identities=13%  Similarity=0.037  Sum_probs=75.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE--EEEEEEe--CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      +|+++|++|+|||||++.+++......    ...|....  ...+.+.  ....+.+|||||...           +...
T Consensus         2 KivivG~~~vGKTsli~~l~~~~~~~~----~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-----------~~~~   66 (201)
T cd04107           2 KVLVIGDLGVGKTSIIKRYVHGIFSQH----YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER-----------FGGM   66 (201)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeEEEEEEEEEECCCCEEEEEEEECCCchh-----------hhhh
Confidence            789999999999999999998653211    12232222  2233332  234578999999864           3334


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh--hhcCcEEEEEeCcCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDEL  151 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~~iv~tk~D~~  151 (174)
                      ....+..+|++++|+|.+++-+... ..|...+......  ....|+++|.||+|+.
T Consensus        67 ~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~  123 (201)
T cd04107          67 TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK  123 (201)
T ss_pred             HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence            4556788899999999985433333 3455555543211  1235899999999996

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.69  E-value=1.3e-15  Score=104.66  Aligned_cols=117  Identities=24%  Similarity=0.209  Sum_probs=73.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCccee-eEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST-CEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ..+++++|++|+|||||++++++.......    ..|.. ........ .+  ..+.++||||..+.           ..
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~   65 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDY----DPTIEDSYTKQCEI-DGQWAILDILDTAGQEEF-----------SA   65 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCccc----CCCccceEEEEEEE-CCEEEEEEEEECCCCcch-----------hH
Confidence            368999999999999999999876532221    11111 11112222 33  35788999998752           22


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+..+|++++|+|.++.-+... ..+...+.+... ....|+++++||+|+...
T Consensus        66 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~~  122 (164)
T cd04145          66 MREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQ  122 (164)
T ss_pred             HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCcccccc
Confidence            23334566799999999985433222 344444444322 123699999999998654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01890 LepA LepA subfamily

Probab=99.69  E-value=8.1e-16  Score=107.37  Aligned_cols=117  Identities=18%  Similarity=0.220  Sum_probs=72.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccc------cccc-------CCCCcceeeEEEEEEE----eCCcEEEEEeCCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAF------KSRA-------SSSGVTSTCEMQRTVL----KDGQVVNVIDTPGLFDF   83 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~------~~~~-------~~~~~t~~~~~~~~~~----~~~~~~~~iDtpG~~~~   83 (174)
                      +.|+++|++|+|||||++++++....      ....       ...+.+.........+    ..+..+.+|||||+.+ 
T Consensus         1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-   79 (179)
T cd01890           1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD-   79 (179)
T ss_pred             CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh-
Confidence            46899999999999999999874210      0000       0012222222222222    1245678999999976 


Q ss_pred             CCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                                +...+..++..+|++++|+|++++.+..+...+..+..   ..  .|+++|+||+|+...
T Consensus        80 ----------~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~--~~iiiv~NK~Dl~~~  134 (179)
T cd01890          80 ----------FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NN--LEIIPVINKIDLPSA  134 (179)
T ss_pred             ----------hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cC--CCEEEEEECCCCCcC
Confidence                      22233344567899999999986666555444333222   22  589999999998643

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04169 RF3 RF3 subfamily

Probab=99.69  E-value=1.4e-15  Score=112.54  Aligned_cols=117  Identities=17%  Similarity=0.227  Sum_probs=78.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc--cccccC------------------CCCcceeeEEEEEEEeCCcEEEEEeCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRA--FKSRAS------------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGL   80 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~--~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~   80 (174)
                      +.|+++|+.|+|||||+++|+....  ...|..                  ..+.+.......+.+ ++..+.++||||.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG~   81 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPGH   81 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCCc
Confidence            7899999999999999999974321  111100                  112334444556666 7788999999998


Q ss_pred             CCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           81 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      .++.       .+..    ..+..+|++++|+|++++.......+++.....     ..|+++++||+|....+
T Consensus        82 ~df~-------~~~~----~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~-----~~P~iivvNK~D~~~a~  139 (267)
T cd04169          82 EDFS-------EDTY----RTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR-----GIPIITFINKLDREGRD  139 (267)
T ss_pred             hHHH-------HHHH----HHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc-----CCCEEEEEECCccCCCC
Confidence            7521       1222    234466999999999877766665555443332     26899999999987654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01863 Rab18 Rab18 subfamily

Probab=99.68  E-value=8.1e-16  Score=105.55  Aligned_cols=118  Identities=18%  Similarity=0.146  Sum_probs=74.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      +++++|++|+|||||++++++........  ...+.........+. ....+.++||||...           +......
T Consensus         2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~~~   68 (161)
T cd01863           2 KILLIGDSGVGKSSLLLRFTDDTFDPDLA--ATIGVDFKVKTLTVDGKKVKLAIWDTAGQER-----------FRTLTSS   68 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccC--CcccceEEEEEEEECCEEEEEEEEECCCchh-----------hhhhhHH
Confidence            78999999999999999999876432211  112222222222231 224689999999764           2333344


Q ss_pred             ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+..+|++++|+|.++.-+... ..+++.+...... ...|++++.||+|+...
T Consensus        69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~~iv~nK~D~~~~  121 (161)
T cd01863          69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTN-NDIVKMLVGNKIDKENR  121 (161)
T ss_pred             HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCC-CCCcEEEEEECCccccc
Confidence            5678899999999985433333 3455555554322 23689999999999733

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.68  E-value=9.5e-16  Score=105.25  Aligned_cols=116  Identities=22%  Similarity=0.160  Sum_probs=73.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe---CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +|+++|.+|+|||||++.+++......  ...............+.   ....+.++||||..+           +....
T Consensus         2 kv~~vG~~~~GKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~   68 (162)
T cd04106           2 KVIVVGNGNVGKSSMIQRFVKGIFTKD--YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-----------FDAIT   68 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCC--CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-----------HHHhH
Confidence            689999999999999999998653211  11111122112222231   234689999999654           33334


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..++..+|++++|++.+++-+... ..++..+....   ...|+++|+||+|+...
T Consensus        69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~  121 (162)
T cd04106          69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLDQ  121 (162)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhcccc
Confidence            456678899999999984332222 34444444322   23599999999998754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.68  E-value=5.5e-16  Score=110.63  Aligned_cols=117  Identities=15%  Similarity=0.188  Sum_probs=76.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc-ccccccCCCCcceeeEEEEEEEe--------------------------------C
Q 030624           22 TVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEMQRTVLK--------------------------------D   68 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~--------------------------------~   68 (174)
                      +++++|++|+|||||+++|++.. ....+....+.+..+.+....+.                                .
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL   81 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence            68999999999999999998873 22233233334444443333321                                1


Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC-CCHHHHHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624           69 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus        69 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                      ...+.+|||||..+           +...+......+|++++|+|++++ ....+...+..+... +   .+|+++++||
T Consensus        82 ~~~i~~iDtPG~~~-----------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~---~~~iiivvNK  146 (203)
T cd01888          82 VRHVSFVDCPGHEI-----------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-G---LKHIIIVQNK  146 (203)
T ss_pred             ccEEEEEECCChHH-----------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-C---CCcEEEEEEc
Confidence            16789999999643           444444455677999999999853 344445555444332 1   1478999999


Q ss_pred             cCCCCC
Q 030624          148 GDELED  153 (174)
Q Consensus       148 ~D~~~~  153 (174)
                      +|+...
T Consensus       147 ~Dl~~~  152 (203)
T cd01888         147 IDLVKE  152 (203)
T ss_pred             hhccCH
Confidence            999764

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04120 Rab12 Rab12 subfamily

Probab=99.68  E-value=1.1e-15  Score=108.91  Aligned_cols=116  Identities=15%  Similarity=0.219  Sum_probs=78.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .|+++|..|+|||||++.+...... .. .....+.......+.+ ++  ..+.+|||+|...           +...+.
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~-~~-~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~-----------~~~l~~   67 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFC-EA-CKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQER-----------FNSITS   67 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCC-Cc-CCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHHHH
Confidence            5889999999999999999876532 21 1111222222233344 33  5678999999875           444555


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .++.++|++++|+|.+++-+... ..|++.+.+.....  .|+++|.||+|+...
T Consensus        68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~--~piilVgNK~DL~~~  120 (202)
T cd04120          68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETD  120 (202)
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccc
Confidence            67788999999999986544444 45666665543222  689999999998643

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04136 Rap_like Rap-like subfamily

Probab=99.68  E-value=1e-15  Score=105.16  Aligned_cols=116  Identities=19%  Similarity=0.195  Sum_probs=73.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCccee-eEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST-CEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+|+++|++|+|||||++.+++.......    .+|.. ........ ++  ..+.++||||..+.           ...
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~   65 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKY----DPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQF-----------TAM   65 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCchhhhEEEEEEE-CCEEEEEEEEECCCcccc-----------chH
Confidence            58999999999999999999876532111    11111 11122222 33  35678999998762           223


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+..+|++++|+|.++.-+... ..+.+.+.+.... ...|++++.||+|+...
T Consensus        66 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~  121 (163)
T cd04136          66 RDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLEDE  121 (163)
T ss_pred             HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence            3345677899999999985433332 4455555544221 23689999999998653

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04109 Rab28 Rab28 subfamily

Probab=99.68  E-value=1.1e-15  Score=109.99  Aligned_cols=117  Identities=21%  Similarity=0.168  Sum_probs=76.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE--EEEEEEeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      +++++|.+|+|||||++.+++......    ..+|....  .....+..  ...+.+|||||...           ....
T Consensus         2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~----~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-----------~~~l   66 (215)
T cd04109           2 KIVVLGDGAVGKTSLCRRFAKEGFGKS----YKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-----------GGKM   66 (215)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCC----CCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-----------HHHH
Confidence            689999999999999999997653211    12232222  22333322  34678999999653           2233


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh-hhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~~iv~tk~D~~~~  153 (174)
                      ...++..+|++++|+|.++.-+... ..|++.+.+.... ....|+++|.||+|+...
T Consensus        67 ~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~  124 (215)
T cd04109          67 LDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN  124 (215)
T ss_pred             HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc
Confidence            3445678899999999985433333 4566667665432 122478999999999643

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.68  E-value=1.2e-15  Score=104.45  Aligned_cols=114  Identities=15%  Similarity=0.088  Sum_probs=74.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      +++++|..|+|||||++++++.... .    ...|.........+ .+..+.++|+||...           +......+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~-~----~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~   63 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVV-T----TIPTIGFNVETVEY-KNVSFTVWDVGGQDK-----------IRPLWKHY   63 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCC-C----CCCCcCcceEEEEE-CCEEEEEEECCCChh-----------hHHHHHHH
Confidence            5799999999999999999988621 2    12233333344444 567899999999875           23334445


Q ss_pred             cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          102 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +..+|++++|+|++++-.... ..++..+..... ....|+++++||+|+...
T Consensus        64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~  115 (158)
T cd00878          64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA  115 (158)
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc
Confidence            667899999999984322221 233333333211 122699999999999765

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.68  E-value=2.1e-15  Score=104.19  Aligned_cols=112  Identities=15%  Similarity=0.155  Sum_probs=73.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 030624           23 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK  102 (174)
Q Consensus        23 i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~  102 (174)
                      |+++|+.|+|||||++.+.+.......    .+|.......... .+..+.+|||||...           +...+...+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~----~pt~g~~~~~i~~-~~~~l~i~Dt~G~~~-----------~~~~~~~~~   65 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESV----VPTTGFNSVAIPT-QDAIMELLEIGGSQN-----------LRKYWKRYL   65 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccc----cccCCcceEEEee-CCeEEEEEECCCCcc-----------hhHHHHHHH
Confidence            789999999999999999987532221    1222222233334 567899999999875           333334456


Q ss_pred             CCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          103 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       103 ~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .++|++++|+|.+++..... +.++..+..   .....|+++|.||.|+...
T Consensus        66 ~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~---~~~~~piilv~NK~Dl~~~  114 (164)
T cd04162          66 SGSQGLIFVVDSADSERLPLARQELHQLLQ---HPPDLPLVVLANKQDLPAA  114 (164)
T ss_pred             hhCCEEEEEEECCCHHHHHHHHHHHHHHHh---CCCCCcEEEEEeCcCCcCC
Confidence            77899999999985432222 333333322   1223699999999998654

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.68  E-value=9.5e-16  Score=104.71  Aligned_cols=116  Identities=23%  Similarity=0.283  Sum_probs=73.6

Q ss_pred             EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCC
Q 030624           25 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG  104 (174)
Q Consensus        25 i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  104 (174)
                      ++|.+|+|||||+|++++.... .+ ...+.|.......+.+ ++..+.++||||+.+......  ...+....... ..
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~-~~-~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~   74 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQK-VG-NWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK   74 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCccc-cc-CCCCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence            5799999999999999997632 22 2234455554555555 567899999999976432211  11122221111 58


Q ss_pred             ceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          105 IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       105 ~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +|++++|+|+.+ ... ...+...+.+.     ..|+++|+||+|+.+.
T Consensus        75 ~d~vi~v~d~~~-~~~-~~~~~~~~~~~-----~~~~iiv~NK~Dl~~~  116 (158)
T cd01879          75 PDLIVNVVDATN-LER-NLYLTLQLLEL-----GLPVVVALNMIDEAEK  116 (158)
T ss_pred             CcEEEEEeeCCc-chh-HHHHHHHHHHc-----CCCEEEEEehhhhccc
Confidence            899999999984 322 22333333321     2699999999999765

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.68  E-value=1.7e-15  Score=103.07  Aligned_cols=114  Identities=20%  Similarity=0.147  Sum_probs=72.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 030624           23 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK  102 (174)
Q Consensus        23 i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~  102 (174)
                      |+++|++|+|||||+|.|.+.......    .+|.......... ....+.++|+||...           +...+..++
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~   65 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDT----IPTVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC   65 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCc----cCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence            789999999999999999997643221    1222233333333 456789999999764           334444556


Q ss_pred             CCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          103 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       103 ~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+|++++|+|.++...... ..++..+..... ....|+++|+||+|+...
T Consensus        66 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~  116 (159)
T cd04159          66 RGVNAIVYVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLPGA  116 (159)
T ss_pred             hcCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCC
Confidence            77899999999984322111 222222222111 122589999999998765

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04125 RabA_like RabA-like subfamily

Probab=99.68  E-value=1.1e-15  Score=107.71  Aligned_cols=118  Identities=18%  Similarity=0.195  Sum_probs=75.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+|+++|+.|+|||||++.+++........  ...+.......+.... ...+.++||||...           +.....
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~-----------~~~~~~   67 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTK--STIGVDFKIKTVYIENKIIKLQIWDTNGQER-----------FRSLNN   67 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeEEEEEEEEECCEEEEEEEEECCCcHH-----------HHhhHH
Confidence            378999999999999999999876422111  1112222222333311 23568999999654           333445


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+.++|++++|+|.+++-+... ..|+..+.......  .|++++.||.|+...
T Consensus        68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~  120 (188)
T cd04125          68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNN  120 (188)
T ss_pred             HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccc
Confidence            56788999999999985433332 34555555543222  589999999998743

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04112 Rab26 Rab26 subfamily

Probab=99.68  E-value=1.2e-15  Score=107.78  Aligned_cols=118  Identities=14%  Similarity=0.140  Sum_probs=74.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+|+++|++|+|||||++.+.+....... ................. ....+.+|||||...           +.....
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~   68 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGN-FIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER-----------FRSVTH   68 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccC-cCCcccceeEEEEEEECCEEEEEEEEeCCCcHH-----------HHHhhH
Confidence            37899999999999999999876532111 11111111111112221 124578999999653           333334


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ..+..+|++++|+|.++..+... ..++..+.+.....  .|+++|.||+|+..
T Consensus        69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~  120 (191)
T cd04112          69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMSG  120 (191)
T ss_pred             HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccchh
Confidence            45678899999999985433332 55666666653322  58999999999864

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.68  E-value=2.9e-15  Score=124.44  Aligned_cols=125  Identities=22%  Similarity=0.241  Sum_probs=85.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH-
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI-   98 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~-   98 (174)
                      ..+|+++|.+|+|||||+|+|++....... ...+.|.........+ ++..+.++||||+.+.....  ...+....+ 
T Consensus       450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~--~~~e~~~~~r  525 (712)
T PRK09518        450 LRRVALVGRPNVGKSSLLNQLTHEERAVVN-DLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKL--TGAEYYSSLR  525 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCccccccC-CCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccc--hhHHHHHHHH
Confidence            479999999999999999999987632111 2233444443334445 67788899999987532221  112222222 


Q ss_pred             -HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 -GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 -~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                       ..++..+|++++|+|++++.+..+..++..+.+.   .  .|+++|+||+|+...
T Consensus       526 ~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~---~--~piIiV~NK~DL~~~  576 (712)
T PRK09518        526 TQAAIERSELALFLFDASQPISEQDLKVMSMAVDA---G--RALVLVFNKWDLMDE  576 (712)
T ss_pred             HHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEEchhcCCh
Confidence             2346788999999999988888887766555432   2  699999999999764

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.68  E-value=2.8e-15  Score=105.27  Aligned_cols=115  Identities=12%  Similarity=0.090  Sum_probs=75.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|++|+|||||++.+...... .    ..+|.......... .+..+.++||||...           +...+.
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~-~----~~~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~   79 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVV-T----TIPTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPLWR   79 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCcc-c----cCCccccceEEEEE-CCEEEEEEECCCCHh-----------HHHHHH
Confidence            378999999999999999999754432 1    11233333333444 567899999999864           444455


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh--hcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~~~  153 (174)
                      .++.++|++|+|+|.++.-+..+  ..+.+.+.....  ...|+++|.||.|+.+.
T Consensus        80 ~~~~~ad~iI~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~  133 (182)
T PTZ00133         80 HYYQNTNGLIFVVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPNA  133 (182)
T ss_pred             HHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence            56788999999999984322221  122233332221  23689999999998653

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.68  E-value=7.7e-16  Score=112.67  Aligned_cols=131  Identities=19%  Similarity=0.206  Sum_probs=102.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCC-hHHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG-SEFVGKEIVK   96 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~-~~~~~~~~~~   96 (174)
                      .+...++++|.+++|||||.|.+.|...+..  +....|+..+...+-...+..+.|+||||+...... .+..+..+..
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~v--S~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAV--SRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccc--cccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            3457899999999999999999999987544  566677777777776667788999999999986553 3444555555


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      -.+.++..+|++++++|+++.-.......+..+..+..    .|.++|+||.|..+..
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~----ips~lvmnkid~~k~k  201 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK----IPSILVMNKIDKLKQK  201 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc----CCceeeccchhcchhh
Confidence            56667888999999999986445555777888888752    4789999999998763

>cd00880 Era_like Era (E

Probab=99.68  E-value=4.1e-15  Score=100.96  Aligned_cols=119  Identities=25%  Similarity=0.212  Sum_probs=76.4

Q ss_pred             EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCC
Q 030624           25 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG  104 (174)
Q Consensus        25 i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~  104 (174)
                      ++|+.|+|||||+|+|++......+ ...+.+...............+.++||||+.+............    ......
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~----~~~~~~   75 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELA----RRVLER   75 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHH----HHHHHh
Confidence            5899999999999999987644222 12223333333333332266899999999998654333322222    234456


Q ss_pred             ceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          105 IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       105 ~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +|.+++++++.+........+......     ...|+++|+||+|+...
T Consensus        76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-----~~~~~ivv~nK~D~~~~  119 (163)
T cd00880          76 ADLILFVVDADLRADEEEEKLLELLRE-----RGKPVLLVLNKIDLLPE  119 (163)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCeEEEEEEccccCCh
Confidence            799999999985555555542222222     12689999999999876

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>CHL00071 tufA elongation factor Tu

Probab=99.68  E-value=4e-16  Score=122.07  Aligned_cols=119  Identities=16%  Similarity=0.196  Sum_probs=83.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   83 (174)
                      .+..+++++|+.++|||||+++|++.....              ..+...+.|.......+.+ ++..+.++||||+.+ 
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~~-   87 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD-   87 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChHH-
Confidence            345889999999999999999999752110              0111234555544444444 566789999999653 


Q ss_pred             CCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCc-EEEEEeCcCCCCC
Q 030624           84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELED  153 (174)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~iv~tk~D~~~~  153 (174)
                                +...+...+..+|++++|+|+..++...+.+.+..+....     .| +++++||+|+...
T Consensus        88 ----------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g-----~~~iIvvvNK~D~~~~  143 (409)
T CHL00071         88 ----------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVG-----VPNIVVFLNKEDQVDD  143 (409)
T ss_pred             ----------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcC-----CCEEEEEEEccCCCCH
Confidence                      3333334456779999999998788888888887666542     35 7789999999864

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.68  E-value=1.7e-15  Score=119.71  Aligned_cols=121  Identities=26%  Similarity=0.311  Sum_probs=80.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+++++|.+|+|||||+|+|++....... ...+.|.......+.+ .+..+.++||||+.++.   +.......+....
T Consensus       216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~---~~ie~~gi~~~~~  290 (449)
T PRK05291        216 LKVVIAGRPNVGKSSLLNALLGEERAIVT-DIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETD---DEVEKIGIERSRE  290 (449)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCc---cHHHHHHHHHHHH
Confidence            78999999999999999999987632121 2234454444444555 67789999999987532   2222222222333


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+..+|++++|+|++++.+..+...+   ..  ..  ..|+++|+||+|+...
T Consensus       291 ~~~~aD~il~VvD~s~~~s~~~~~~l---~~--~~--~~piiiV~NK~DL~~~  336 (449)
T PRK05291        291 AIEEADLVLLVLDASEPLTEEDDEIL---EE--LK--DKPVIVVLNKADLTGE  336 (449)
T ss_pred             HHHhCCEEEEEecCCCCCChhHHHHH---Hh--cC--CCCcEEEEEhhhcccc
Confidence            56778999999999866655543333   22  11  2589999999999754

>cd04127 Rab27A Rab27a subfamily

Probab=99.67  E-value=1.7e-15  Score=105.85  Aligned_cols=119  Identities=14%  Similarity=0.054  Sum_probs=75.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-----------CCcEEEEEeCCCCCCCCCChHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------DGQVVNVIDTPGLFDFSAGSEF   89 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~~iDtpG~~~~~~~~~~   89 (174)
                      .+|+++|++|+|||||++.+.+......  ...............+.           ....+.+|||||...       
T Consensus         5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------   75 (180)
T cd04127           5 IKFLALGDSGVGKTSFLYQYTDNKFNPK--FITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER-------   75 (180)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCcc--CCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH-------
Confidence            7899999999999999999988653211  11111111111122221           124678999999653       


Q ss_pred             HHHHHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           90 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                          +.......+..+|++++|+|.++.-+... ..|+..+..... ....|+++|.||+|+...
T Consensus        76 ----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~  135 (180)
T cd04127          76 ----FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQ  135 (180)
T ss_pred             ----HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhc
Confidence                44445556778999999999985433333 455555544321 112589999999998653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.67  E-value=2.6e-15  Score=121.52  Aligned_cols=126  Identities=19%  Similarity=0.268  Sum_probs=86.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +.++|+++|+.++|||||+++|.+......  ...+.|.......+.+.....+.+|||||+.++           ....
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-----------~~~r  152 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-----------TSMR  152 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcch-----------hhHH
Confidence            457999999999999999999998764322  223455554455555523348999999998863           2222


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHh
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL  162 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~  162 (174)
                      ...+..+|++++|++++++....+.+.+..+...   .  .|+++++||+|+...+...+.+.+
T Consensus       153 ~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~---~--vPiIVviNKiDl~~~~~e~v~~~L  211 (587)
T TIGR00487       153 ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA---N--VPIIVAINKIDKPEANPDRVKQEL  211 (587)
T ss_pred             HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc---C--CCEEEEEECcccccCCHHHHHHHH
Confidence            3456778999999999877777776665443332   2  589999999999754333344443

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd00879 Sar1 Sar1 subfamily

Probab=99.67  E-value=2.2e-15  Score=106.27  Aligned_cols=126  Identities=13%  Similarity=0.065  Sum_probs=77.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+++++|++|||||||++++.+.... ..    .+|.......+.+ .+..+.++|+||...           ....+.
T Consensus        19 ~~ki~ilG~~~~GKStLi~~l~~~~~~-~~----~~T~~~~~~~i~~-~~~~~~l~D~~G~~~-----------~~~~~~   81 (190)
T cd00879          19 EAKILFLGLDNAGKTTLLHMLKDDRLA-QH----VPTLHPTSEELTI-GNIKFKTFDLGGHEQ-----------ARRLWK   81 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCc-cc----CCccCcceEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence            378999999999999999999986532 11    1122222233444 567889999999654           233344


Q ss_pred             hccCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC-ChhhHHHHhc
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLG  163 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~-~~~~~~~~~~  163 (174)
                      .++.++|++++|+|.++.-... ...++..+.+.. .....|+++++||+|+.+. ....++++++
T Consensus        82 ~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~  146 (190)
T cd00879          82 DYFPEVDGIVFLVDAADPERFQESKEELDSLLSDE-ELANVPFLILGNKIDLPGAVSEEELRQALG  146 (190)
T ss_pred             HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCc-cccCCCEEEEEeCCCCCCCcCHHHHHHHhC
Confidence            5567889999999997432111 123333332211 1123699999999998643 2233444443

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04110 Rab35 Rab35 subfamily

Probab=99.67  E-value=2.1e-15  Score=107.34  Aligned_cols=118  Identities=17%  Similarity=0.145  Sum_probs=74.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ..+|+++|++|+|||||++.+.+.......  ............+.... ...+.+|||||...           +....
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~~~   72 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSY--ITTIGVDFKIRTVEINGERVKLQIWDTAGQER-----------FRTIT   72 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCc--CccccceeEEEEEEECCEEEEEEEEeCCCchh-----------HHHHH
Confidence            378999999999999999999986532111  11111112222222211 23578999999764           23333


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|.+++-+... ..+++.+....   ...|+++|.||+|+...
T Consensus        73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~~  125 (199)
T cd04110          73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPER  125 (199)
T ss_pred             HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc
Confidence            445677899999999985433332 44555554432   22589999999998754

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PRK04213 GTP-binding protein; Provisional

Probab=99.67  E-value=6.3e-15  Score=104.89  Aligned_cols=125  Identities=22%  Similarity=0.214  Sum_probs=73.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      .....+|+++|.+|+|||||+|+|++.... .+ ...+.|...  ....+   ..+.+|||||+.......+.....++.
T Consensus         6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~-~~~~~t~~~--~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~   78 (201)
T PRK04213          6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVR-VG-KRPGVTRKP--NHYDW---GDFILTDLPGFGFMSGVPKEVQEKIKD   78 (201)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cC-CCCceeeCc--eEEee---cceEEEeCCccccccccCHHHHHHHHH
Confidence            344579999999999999999999987632 22 122333322  22222   258999999975432222211222222


Q ss_pred             ----HHHhccCCceEEEEEEeCCCCCC-----------HHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 ----CIGMAKDGIHAVLVVFSVRSRFS-----------QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ----~~~~~~~~~~~il~v~~~~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                          ++......++++++|+|.++...           ..+.+....+...     ..|+++|+||+|+...
T Consensus        79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~p~iiv~NK~Dl~~~  145 (201)
T PRK04213         79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL-----GIPPIVAVNKMDKIKN  145 (201)
T ss_pred             HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc-----CCCeEEEEECccccCc
Confidence                23334456789999999863211           1122333333321     2689999999998654

>cd01889 SelB_euk SelB subfamily

Probab=99.67  E-value=1.2e-15  Score=107.87  Aligned_cols=116  Identities=16%  Similarity=0.282  Sum_probs=73.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcc---cc--cccCCCCcceeeEEEEEEEe-------------CCcEEEEEeCCCCCCC
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRA---FK--SRASSSGVTSTCEMQRTVLK-------------DGQVVNVIDTPGLFDF   83 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~---~~--~~~~~~~~t~~~~~~~~~~~-------------~~~~~~~iDtpG~~~~   83 (174)
                      +|+++|+.|+|||||++++++...   +.  ......+.|.........+.             ....+.++||||+.. 
T Consensus         2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~-   80 (192)
T cd01889           2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS-   80 (192)
T ss_pred             eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence            689999999999999999987310   00  00111234444444444331             256789999999842 


Q ss_pred             CCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                                +.+........+|++++|+|+.+.....+.+.+..... .    ..|+++++||+|+...
T Consensus        81 ----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~-~----~~~~iiv~NK~Dl~~~  135 (192)
T cd01889          81 ----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI-L----CKKLIVVLNKIDLIPE  135 (192)
T ss_pred             ----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH-c----CCCEEEEEECcccCCH
Confidence                      22222233456799999999986666665544433222 1    2589999999999754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04142 RRP22 RRP22 subfamily

Probab=99.67  E-value=2.4e-15  Score=106.90  Aligned_cols=126  Identities=17%  Similarity=0.148  Sum_probs=75.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      +|+++|.+|+|||||++.+++......  ..+..+.......+.+ ++  ..+.++||||.......   ...++.....
T Consensus         2 kI~ivG~~~vGKTsLi~~~~~~~f~~~--~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~---~~~e~~~~~~   75 (198)
T cd04142           2 RVAVLGAPGVGKTAIVRQFLAQEFPEE--YIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGT---AGQEWMDPRF   75 (198)
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCCCcc--cCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCcc---chhHHHHHHH
Confidence            789999999999999999998653221  1111111111122333 33  35789999998753321   1112222223


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHh-hhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-KKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+..+|++++|+|.+++-+... ..+.+.+.+... .....|+++|.||+|+...
T Consensus        76 ~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~  131 (198)
T cd04142          76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH  131 (198)
T ss_pred             hhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc
Confidence            34577899999999985433332 344444544321 1123699999999999653

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.67  E-value=4e-15  Score=104.39  Aligned_cols=115  Identities=14%  Similarity=0.078  Sum_probs=76.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|..|+|||||++.+.......     ..+|.......... .+..+.++|+||...           +...+.
T Consensus        17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~-----~~pt~g~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~~~   79 (181)
T PLN00223         17 EMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWR   79 (181)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCcc-----ccCCcceeEEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence            3799999999999999999998654321     12232333334444 567899999999754           444555


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh--hcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~~~  153 (174)
                      ..+.++|++++|+|.+++-...  ...+.+.+.+...  ...|++++.||.|+.+.
T Consensus        80 ~~~~~a~~iI~V~D~s~~~s~~--~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~  133 (181)
T PLN00223         80 HYFQNTQGLIFVVDSNDRDRVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNA  133 (181)
T ss_pred             HHhccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence            5678899999999998432222  2222333333221  13689999999998654

>cd01893 Miro1 Miro1 subfamily

Probab=99.67  E-value=1.5e-15  Score=104.90  Aligned_cols=114  Identities=17%  Similarity=0.098  Sum_probs=73.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      +++++|..|+|||||++++.+...... ..   .+.........+ .....+.+|||||....           ...+..
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~~   66 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VP---RVLPEITIPADVTPERVPTTIVDTSSRPQD-----------RANLAA   66 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCcc-CC---CcccceEeeeeecCCeEEEEEEeCCCchhh-----------hHHHhh
Confidence            789999999999999999998764322 11   111111111111 13456789999997651           122233


Q ss_pred             ccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+..+|++++|+|.+++-+...  ..|++.+.... .  ..|+++|+||+|+...
T Consensus        67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~--~~pviiv~nK~Dl~~~  118 (166)
T cd01893          67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-V--KVPIILVGNKSDLRDG  118 (166)
T ss_pred             hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhcccc
Confidence            4577899999999985444333  34556565542 2  3699999999999764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.3e-15  Score=104.73  Aligned_cols=120  Identities=16%  Similarity=0.177  Sum_probs=90.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+|+++|.+|+|||.|+..+.+.........+.+  .+......++. +...+.+|||.|..+           ++....
T Consensus        10 FKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIG--VDf~~rt~e~~gk~iKlQIWDTAGQER-----------Frtit~   76 (205)
T KOG0084|consen   10 FKIILIGDSGVGKTCLLLRFKDDTFTESYISTIG--VDFKIRTVELDGKTIKLQIWDTAGQER-----------FRTITS   76 (205)
T ss_pred             EEEEEECCCCcChhhhhhhhccCCcchhhcceee--eEEEEEEeeecceEEEEEeeeccccHH-----------HhhhhH
Confidence            7899999999999999999998876544333333  33333344431 234789999999987           667778


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCCh
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND  155 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~  155 (174)
                      ..++++|+||+|+|.+..-+... ..|+..+.......  .+.++|.||+|+.+...
T Consensus        77 syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~  131 (205)
T KOG0084|consen   77 SYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRV  131 (205)
T ss_pred             hhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhhee
Confidence            88999999999999986555554 67888888876555  48999999999987543

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.66  E-value=1.5e-15  Score=105.55  Aligned_cols=116  Identities=19%  Similarity=0.101  Sum_probs=73.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE--EEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +|+++|..|+|||||++.+++......    ..+|....+  ...... ....+.+|||||...           +....
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~   66 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKN----YKATIGVDFEMERFEILGVPFSLQLWDTAGQER-----------FKCIA   66 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCC----CCCceeeEEEEEEEEECCEEEEEEEEeCCChHH-----------HHhhH
Confidence            689999999999999999998754222    122222222  222221 124689999999865           33333


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+.++|++++|+|.+++-+... ..|++.+.+.... ...|+++|.||+|+...
T Consensus        67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~  121 (170)
T cd04108          67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDP-SSVLLFLVGTKKDLSSP  121 (170)
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEChhcCcc
Confidence            456778999999999974322222 4555554433211 12478999999998643

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.66  E-value=2.4e-15  Score=105.68  Aligned_cols=118  Identities=14%  Similarity=0.126  Sum_probs=73.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE--eCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+|+++|.+|+|||||++.++..... ......+.+.  .......  .....+.++||||...           +...
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~   68 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNT--EKIKVSLGNSKGITFHFWDVGGQEK-----------LRPL   68 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccce--eEEEeeccCCCceEEEEEECCCcHh-----------HHHH
Confidence            368999999999999999999876532 1111111111  1111111  1345789999999754           3334


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      +..++..+|++++|+|+++.-+... ..++..+...... ...|+++++||+|+..
T Consensus        69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~NK~D~~~  123 (183)
T cd04152          69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSEN-QGVPVLVLANKQDLPN  123 (183)
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhc-CCCcEEEEEECcCccc
Confidence            4455678899999999984322222 2334334433221 2369999999999864

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04114 Rab30 Rab30 subfamily

Probab=99.66  E-value=1.9e-15  Score=104.55  Aligned_cols=118  Identities=15%  Similarity=0.128  Sum_probs=74.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+++++|++|+|||||++.+++.......  ....+.........+ .+  ..+.++|+||...           +...
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~   72 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEI-KGEKIKLQIWDTAGQER-----------FRSI   72 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHH
Confidence            389999999999999999999865432121  111111222222333 33  3578899999764           3333


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...++..+|++++|+|.++..+... ..++..+.......  .|++++.||+|+...
T Consensus        73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~~  127 (169)
T cd04114          73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAER  127 (169)
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc
Confidence            3445678899999999874432222 35555555543323  588999999998654

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04117 Rab15 Rab15 subfamily

Probab=99.66  E-value=2.8e-15  Score=103.17  Aligned_cols=114  Identities=17%  Similarity=0.164  Sum_probs=73.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceee--EEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC--EMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      +|+++|++|+|||||++.+++.......    ..|...  ....... .+  ..+.++||||...           ....
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~-----------~~~~   65 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH----ISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQER-----------YQTI   65 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCC----CCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHh-----------HHhh
Confidence            6899999999999999999876543221    122222  2222333 22  3578999999765           2233


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .......+|++++|+|.+++-+... ..+++.+......  ..|+++|.||.|+...
T Consensus        66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~  120 (161)
T cd04117          66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPE--GVQKILIGNKADEEQK  120 (161)
T ss_pred             HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence            3445678899999999985433333 4555555544222  2589999999998654

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.66  E-value=2.5e-15  Score=108.47  Aligned_cols=117  Identities=15%  Similarity=0.048  Sum_probs=77.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE--EEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEI   94 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~   94 (174)
                      ....+|+++|..|+|||||++.++........    ..|....+.  ..... ....+.+|||||...           +
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~----~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~   75 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-----------F   75 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCcc----CCccceeEEEEEEEECCeEEEEEEEECCCchh-----------h
Confidence            44589999999999999999998765432111    122222222  22221 235789999999876           2


Q ss_pred             HHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      .......+..+|++|+|+|.+++.+... ..|++.+.+.. .  ..|+++|.||+|+..
T Consensus        76 ~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~--~~piilvgNK~Dl~~  131 (219)
T PLN03071         76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E--NIPIVLCGNKVDVKN  131 (219)
T ss_pred             hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-C--CCcEEEEEEchhhhh
Confidence            2333445678899999999986544443 46666666543 2  269999999999854

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.66  E-value=2.1e-15  Score=112.05  Aligned_cols=116  Identities=22%  Similarity=0.255  Sum_probs=77.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccc--ccccCC--------------CCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAF--KSRASS--------------SGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~--~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      +|+++|++|+|||||+++|+.....  ..+...              ...+.........+ ++..+.++||||..+   
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~---   76 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYAD---   76 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHH---
Confidence            4799999999999999999753211  111100              12233334445556 677899999999875   


Q ss_pred             ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                              +...+..++..+|.+++|+|+++.........++.+...     ..|.++++||+|.....
T Consensus        77 --------f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~-----~~p~iivvNK~D~~~~~  132 (268)
T cd04170          77 --------FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEA-----GIPRIIFINKMDRERAD  132 (268)
T ss_pred             --------HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCccCCCC
Confidence                    222233344566999999999877666666665544432     25889999999998653

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.66  E-value=1.4e-15  Score=105.17  Aligned_cols=114  Identities=22%  Similarity=0.165  Sum_probs=73.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe---CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +|+++|++|+|||||++.++.......    ...|.........+.   ....+.++||||......           ..
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~~   66 (166)
T cd00877           2 KLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG-----------LR   66 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCC----CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc-----------cc
Confidence            789999999999999999986543211    122332233222221   234678999999865321           11


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|.+++-+... ..++..+.....   ..|+++|.||+|+...
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~  119 (166)
T cd00877          67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR  119 (166)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc
Confidence            224567899999999985433333 456666665543   3699999999998643

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01862 Rab7 Rab7 subfamily

Probab=99.66  E-value=3.5e-15  Score=103.36  Aligned_cols=117  Identities=15%  Similarity=0.128  Sum_probs=71.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      +|+++|++|+|||||++++.+.......  ..............+ .+  ..+.++|+||...           +.....
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~~~   67 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVTV-DDKLVTLQIWDTAGQER-----------FQSLGV   67 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcCc--CCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHhHHH
Confidence            7899999999999999999987632111  111111111222333 22  3467999999754           223334


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh--hhcCcEEEEEeCcCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE  152 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~~iv~tk~D~~~  152 (174)
                      ..+.++|++++++|..++.+... ..+.+.+......  ....|+++|+||+|+..
T Consensus        68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  123 (172)
T cd01862          68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE  123 (172)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence            55678899999999975433222 2333333332221  11368999999999984

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.66  E-value=3.3e-15  Score=102.27  Aligned_cols=116  Identities=22%  Similarity=0.193  Sum_probs=72.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceee-EEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC-EMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+|+++|++|+|||||+|++++.......    .+|... ....... .+  ..+.+|||||...           +...
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~l   65 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQVVI-DGETCLLDILDTAGQEE-----------YSAM   65 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCc----CCcchheEEEEEEE-CCEEEEEEEEECCCCcc-----------hHHH
Confidence            58999999999999999999986532211    111111 1122222 22  3467899999765           2333


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+..+|++++|++.++.-+... ..+...+.+.... ...|+++|.||+|+...
T Consensus        66 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~~~  121 (162)
T cd04138          66 RDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDS-DDVPMVLVGNKCDLAAR  121 (162)
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence            3345567799999999884332222 3444455544221 22689999999998753

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.66  E-value=3e-15  Score=102.98  Aligned_cols=116  Identities=19%  Similarity=0.199  Sum_probs=71.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      +|+++|++|+|||||++++.+........  . .+.......... +.  ..+.++||||..+.           .....
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~--~-t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~-----------~~~~~   66 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGHFVDDYD--P-TIEDSYRKQIEI-DGEVCLLDILDTAGQEEF-----------SAMRD   66 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCcccC--C-chhhhEEEEEEE-CCEEEEEEEEECCCcccc-----------hHHHH
Confidence            78999999999999999999865322211  1 111111122222 22  35778999998762           22223


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+..+|++++|+|.++.-+... ..+.+.+.+.... ...|++++.||+|+...
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~  120 (164)
T smart00173       67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESE  120 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence            34556799999999984332222 3444444443222 12689999999998653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PLN03110 Rab GTPase; Provisional

Probab=99.66  E-value=3.2e-15  Score=107.65  Aligned_cols=117  Identities=16%  Similarity=0.132  Sum_probs=77.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE--EEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ..+|+++|++|+|||||++.+++.......    ..|....+  ..+... ....+.+|||||..+           +..
T Consensus        12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~----~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-----------~~~   76 (216)
T PLN03110         12 LFKIVLIGDSGVGKSNILSRFTRNEFCLES----KSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-----------YRA   76 (216)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCceeEEEEEEEEEECCEEEEEEEEECCCcHH-----------HHH
Confidence            379999999999999999999987643221    12222222  222221 123678999999664           334


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+..++++++|+|.++.-+... ..|+..+.......  .|++++.||+|+...
T Consensus        77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~  132 (216)
T PLN03110         77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLNHL  132 (216)
T ss_pred             HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcccc
Confidence            44556678899999999985433333 45666666543222  589999999998543

>smart00053 DYNc Dynamin, GTPase

Probab=99.66  E-value=1.6e-14  Score=104.89  Aligned_cols=138  Identities=16%  Similarity=0.148  Sum_probs=85.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccc--ccCCCCcce-----------------------------------------
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKS--RASSSGVTS-----------------------------------------   57 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~--~~~~~~~t~-----------------------------------------   57 (174)
                      +.++++|++|+||||++++|+|...+..  |..+..++.                                         
T Consensus        27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~  106 (240)
T smart00053       27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGT  106 (240)
T ss_pred             CeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCC
Confidence            6899999999999999999999752222  111100000                                         


Q ss_pred             ------eeEEEEEEEeCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccC-CceEEEEEEeCCCCCCHHH-HHHHH
Q 030624           58 ------TCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKD-GIHAVLVVFSVRSRFSQEE-EAALH  127 (174)
Q Consensus        58 ------~~~~~~~~~~~~~~~~~iDtpG~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~il~v~~~~~~~~~~~-~~~l~  127 (174)
                            ..-...+..+....+.++||||+.....  ........+.+.+..+.. ..+.+++|+++...+...+ .++.+
T Consensus       107 ~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~  186 (240)
T smart00053      107 NKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAK  186 (240)
T ss_pred             CCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHH
Confidence                  0001111112235689999999975421  124455556666666655 3458889999876666655 35544


Q ss_pred             HHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhcc
Q 030624          128 SLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  164 (174)
Q Consensus       128 ~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~  164 (174)
                      .+...     ..++++|+||+|..++. ..+.+.++.
T Consensus       187 ~ld~~-----~~rti~ViTK~D~~~~~-~~~~~~~~~  217 (240)
T smart00053      187 EVDPQ-----GERTIGVITKLDLMDEG-TDARDILEN  217 (240)
T ss_pred             HHHHc-----CCcEEEEEECCCCCCcc-HHHHHHHhC
Confidence            44433     26999999999998764 335555555

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.66  E-value=2.2e-15  Score=103.71  Aligned_cols=115  Identities=15%  Similarity=0.152  Sum_probs=72.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc-ccccccCCCCcceeeEE--EEEEE--eCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEM--QRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~-~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      +|+++|++|+|||||++++.... .+...   ...|.....  .....  .....+.+|||||...           ...
T Consensus         2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~   67 (164)
T cd04101           2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKN---YLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-----------YSD   67 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcCcc---CCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-----------HHH
Confidence            78999999999999999998642 12111   112222111  12222  1235789999999643           223


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .......++|++++|+|.++.-+... ..|++.+....   ...|+++|.||+|+...
T Consensus        68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~  122 (164)
T cd04101          68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK  122 (164)
T ss_pred             HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc
Confidence            33445678899999999985432222 44555444432   22689999999998654

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04111 Rab39 Rab39 subfamily

Probab=99.65  E-value=4e-15  Score=106.77  Aligned_cols=118  Identities=18%  Similarity=0.120  Sum_probs=75.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE--EEEEEeC--CcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      ..+|+++|++|+|||||++.+++......    ...|.....  ..+....  ...+.++||||...           +.
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~----~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~   66 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV----SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FR   66 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCC----CCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HH
Confidence            37899999999999999999998663222    112222222  2222212  24678999999764           33


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ......+..+|++++|+|.+++-+... ..+++.+.+.... ...+++++.||+|+...
T Consensus        67 ~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~  124 (211)
T cd04111          67 SITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQ  124 (211)
T ss_pred             HHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccc
Confidence            333456678899999999985433333 4555555544322 12467899999998753

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.65  E-value=2.4e-15  Score=110.59  Aligned_cols=145  Identities=20%  Similarity=0.170  Sum_probs=101.4

Q ss_pred             cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHH
Q 030624           11 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFV   90 (174)
Q Consensus        11 ~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~   90 (174)
                      +.++...-  ..++++|-++||||||+|+|....+ ..+ .....|....+..+.+.+...+.+-|.||+.+....+.-+
T Consensus       189 ~~lELKsi--advGLVG~PNAGKSTLL~als~AKp-kVa-~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGl  264 (366)
T KOG1489|consen  189 IELELKSI--ADVGLVGFPNAGKSTLLNALSRAKP-KVA-HYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGL  264 (366)
T ss_pred             EEEEeeee--cccceecCCCCcHHHHHHHhhccCC-ccc-ccceeeeccccceeeccccceeEeccCccccccccccCcc
Confidence            33444443  5589999999999999999998775 232 3344555555556666455569999999999999899999


Q ss_pred             HHHHHHHHHhccCCceEEEEEEeCCCC--CCHHH--HHHHHHHHHHHhhh-hcCcEEEEEeCcCCCCCChhhHHHHhcc
Q 030624           91 GKEIVKCIGMAKDGIHAVLVVFSVRSR--FSQEE--EAALHSLQTLFGKK-IFDYMIVVFTGGDELEDNDETLEDYLGR  164 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~il~v~~~~~~--~~~~~--~~~l~~l~~~~~~~-~~~~~~iv~tk~D~~~~~~~~~~~~~~~  164 (174)
                      ..++++.+..+    +.++||+|++..  .++.+  +.....+..+ .+. ..+|.++|.||+|..+.+...+.++.+.
T Consensus       265 G~~FLrHiER~----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~y-ek~L~~rp~liVaNKiD~~eae~~~l~~L~~~  338 (366)
T KOG1489|consen  265 GYKFLRHIERC----KGLLFVVDLSGKQLRNPWQQLQLLIEELELY-EKGLADRPALIVANKIDLPEAEKNLLSSLAKR  338 (366)
T ss_pred             cHHHHHHHHhh----ceEEEEEECCCcccCCHHHHHHHHHHHHHHH-hhhhccCceEEEEeccCchhHHHHHHHHHHHH
Confidence            99999998877    999999999843  14443  2223333332 222 3468999999999976553444555554

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.65  E-value=3.4e-16  Score=102.29  Aligned_cols=116  Identities=20%  Similarity=0.173  Sum_probs=68.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccc--cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFK--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      +|+++|+.|+|||||+++|++.....  ........+.......... ....+.++|++|.....           ....
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~-----------~~~~   68 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFY-----------SQHQ   68 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHH-----------CTSH
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceec-----------cccc
Confidence            68999999999999999999877541  1111222233222222211 22357899999986521           1111


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGD  149 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D  149 (174)
                      .....+|++++|+|.+++-+... ..++.++..........|+++|.||.|
T Consensus        69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            12344599999999984432333 344555555543333469999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.65  E-value=4.5e-15  Score=123.06  Aligned_cols=117  Identities=16%  Similarity=0.210  Sum_probs=84.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+.++|+++|+.++|||||+++|.+......  ...+.|.......+.+ .+..+.||||||+.++.           ..
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~-----------~m  353 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVET-NGGKITFLDTPGHEAFT-----------AM  353 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEEE-CCEEEEEEECCCCccch-----------hH
Confidence            3458999999999999999999987654322  2234555555556666 56789999999988732           22


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+..+|++++|++++++....+.+.+..+...   .  .|+++++||+|+...
T Consensus       354 ~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~---~--vPiIVviNKiDl~~a  404 (787)
T PRK05306        354 RARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA---G--VPIIVAINKIDKPGA  404 (787)
T ss_pred             HHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc---C--CcEEEEEECcccccc
Confidence            22345667999999999878777777666544432   2  589999999999654

>cd04121 Rab40 Rab40 subfamily

Probab=99.65  E-value=4.7e-15  Score=104.61  Aligned_cols=115  Identities=17%  Similarity=0.148  Sum_probs=78.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|..|+|||||+..+...... .. .....+.......+.. ++  ..+.+|||+|...           +....
T Consensus         7 ~KivviG~~~vGKTsll~~~~~~~~~-~~-~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~l~   72 (189)
T cd04121           7 LKFLLVGDSDVGKGEILASLQDGSTE-SP-YGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGR-----------FCTIF   72 (189)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC-CC-CCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHHH
Confidence            78999999999999999999875421 11 1111222222223333 33  4678999999875           33444


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ...+..+|++++|+|.+++.+... ..|++.+.+.. .  ..|+++|.||.|+..
T Consensus        73 ~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~--~~piilVGNK~DL~~  124 (189)
T cd04121          73 RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-P--GVPKILVGNRLHLAF  124 (189)
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccchh
Confidence            456788999999999986555544 56777775543 2  369999999999864

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>PLN03108 Rab family protein; Provisional

Probab=99.65  E-value=5.1e-15  Score=106.18  Aligned_cols=117  Identities=15%  Similarity=0.139  Sum_probs=73.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|++|+|||||++.+++...........+  .......... .+  ..+.+|||||...           +....
T Consensus         7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~--~~~~~~~i~~-~~~~i~l~l~Dt~G~~~-----------~~~~~   72 (210)
T PLN03108          7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--VEFGARMITI-DNKPIKLQIWDTAGQES-----------FRSIT   72 (210)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc--ceEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHHH
Confidence            7899999999999999999998653222111111  1111112222 22  3578999999764           22333


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|.++.-+... ..++..+......  ..|++++.||+|+...
T Consensus        73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~  126 (210)
T PLN03108         73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAHR  126 (210)
T ss_pred             HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccc
Confidence            445667899999999984332222 3455544443222  2689999999998654

>PLN03118 Rab family protein; Provisional

Probab=99.65  E-value=9.5e-15  Score=104.82  Aligned_cols=119  Identities=13%  Similarity=0.113  Sum_probs=73.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ..+|+++|++|+|||||++++++.... .  .....+.......+.... ...+.++||||...           +....
T Consensus        14 ~~kv~ivG~~~vGKTsli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~~   79 (211)
T PLN03118         14 SFKILLIGDSGVGKSSLLVSFISSSVE-D--LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER-----------FRTLT   79 (211)
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCC-C--cCCCceeEEEEEEEEECCEEEEEEEEECCCchh-----------hHHHH
Confidence            379999999999999999999986531 1  111111222222333311 24678999999876           22233


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..++..+|++++|+|.++.-+....  .+...+... ......++++|.||+|+...
T Consensus        80 ~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~-~~~~~~~~ilv~NK~Dl~~~  135 (211)
T PLN03118         80 SSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELY-STNQDCVKMLVGNKVDRESE  135 (211)
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECcccccc
Confidence            3456778999999999854333322  233333322 11122578999999998654

>cd04176 Rap2 Rap2 subgroup

Probab=99.65  E-value=3.9e-15  Score=102.42  Aligned_cols=116  Identities=19%  Similarity=0.196  Sum_probs=73.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcce-eeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS-TCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+|+++|.+|+|||||++.++.........    .|. ......... ++  ..+.++||||.....           ..
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~----~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~   65 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYD----PTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA-----------SM   65 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCC----CchhheEEEEEEE-CCEEEEEEEEECCCccccc-----------ch
Confidence            589999999999999999988765432211    111 111222222 22  357789999987632           22


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+.++|++++|+|.++.-+... ..+...+.+... ....|+++|.||+|+...
T Consensus        66 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~  121 (163)
T cd04176          66 RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESE  121 (163)
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc
Confidence            2234567899999999985433232 455555555422 123689999999998643

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>PTZ00369 Ras-like protein; Provisional

Probab=99.64  E-value=5.7e-15  Score=104.25  Aligned_cols=119  Identities=22%  Similarity=0.185  Sum_probs=74.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ..+++++|.+|+|||||++.+.+.........+.+.+.   ....... ....+.+|||||..+           +....
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~l~   70 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY---RKQCVIDEETCLLDILDTAGQEE-----------YSAMR   70 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE---EEEEEECCEEEEEEEEeCCCCcc-----------chhhH
Confidence            47999999999999999999997653222111111111   1122221 123567899999876           22233


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..++..+|++++|+|.+++-+... ..+.+.+.+.... ...|++++.||+|+...
T Consensus        71 ~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~  125 (189)
T PTZ00369         71 DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDSE  125 (189)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence            345667899999999985433222 4555555554322 13589999999998543

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.64  E-value=1.9e-14  Score=98.90  Aligned_cols=121  Identities=19%  Similarity=0.236  Sum_probs=73.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHH---HHHH
Q 030624           23 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV---KCIG   99 (174)
Q Consensus        23 i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~---~~~~   99 (174)
                      |+++|++|+|||||+|.|++...........+.|.....  ..  ....+.++||||+....... .....+.   ....
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~D~~g~~~~~~~~-~~~~~~~~~~~~~~   76 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FN--VNDKFRLVDLPGYGYAKVSK-EVKEKWGKLIEEYL   76 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EE--ccCeEEEecCCCccccccCH-HHHHHHHHHHHHHH
Confidence            789999999999999999943322111122222332222  22  23488999999987643311 1111122   1122


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ......+.+++++|............++.+....     .|+++++||+|+..+
T Consensus        77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~-----~~vi~v~nK~D~~~~  125 (170)
T cd01876          77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELG-----IPFLVVLTKADKLKK  125 (170)
T ss_pred             HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcC-----CCEEEEEEchhcCCh
Confidence            2334568899999987555555566666655531     589999999999754

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04175 Rap1 Rap1 subgroup

Probab=99.64  E-value=4.2e-15  Score=102.38  Aligned_cols=117  Identities=15%  Similarity=0.134  Sum_probs=72.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|.+|+|||||+++++.......    ..+|.... ........ ...+.++||||...           +....
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~   66 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEK----YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ-----------FTAMR   66 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcc----cCCcchheEEEEEEECCEEEEEEEEECCCccc-----------chhHH
Confidence            5899999999999999999886542111    11122111 12233311 23567999999875           22333


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|.++.-+... ..++..+..... ....|++++.||+|+...
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~  121 (164)
T cd04175          67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDE  121 (164)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhc
Confidence            345667799999999874433332 445555544322 123699999999999654

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04144 Ras2 Ras2 subfamily

Probab=99.64  E-value=4.5e-15  Score=104.85  Aligned_cols=116  Identities=21%  Similarity=0.209  Sum_probs=73.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEEeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +|+++|.+|+|||||++.++..... ..   ...|.... ...... .+.  .+.+|||||..+           +....
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~-~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~   64 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFV-ET---YDPTIEDSYRKQVVV-DGQPCMLEVLDTAGQEE-----------YTALR   64 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCC-cc---CCCchHhhEEEEEEE-CCEEEEEEEEECCCchh-----------hHHHH
Confidence            4799999999999999999865431 11   11111111 112222 333  478899999765           22333


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh-hhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|.++..+... ..+++.+...... ....|+++|.||+|+...
T Consensus        65 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~  121 (190)
T cd04144          65 DQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE  121 (190)
T ss_pred             HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc
Confidence            345677899999999985443333 4566666554321 123689999999998643

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.64  E-value=2e-15  Score=107.74  Aligned_cols=115  Identities=14%  Similarity=0.154  Sum_probs=71.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE---eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .|+++|++|||||||++.|.+....... .    +..........   .++..+.++||||..+           ++..+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~-~----s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~-----------~~~~~   65 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTV-T----SIEPNVATFILNSEGKGKKFRLVDVPGHPK-----------LRDKL   65 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcc-C----cEeecceEEEeecCCCCceEEEEECCCCHH-----------HHHHH
Confidence            6899999999999999999987532221 1    11112222211   1356789999999885           33333


Q ss_pred             HhccCCc-eEEEEEEeCCCCCCHHHHHHHHHHHHHHh----hhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGI-HAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~-~~il~v~~~~~~~~~~~~~~l~~l~~~~~----~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+ ++++||+|+.+.. .......+++...+.    .....|++++.||+|+...
T Consensus        66 ~~~~~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          66 LETLKNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             HHHHhccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            3344555 9999999998432 222222233322221    1123699999999998764

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd04118 Rab24 Rab24 subfamily

Probab=99.64  E-value=4.2e-15  Score=105.09  Aligned_cols=113  Identities=20%  Similarity=0.200  Sum_probs=72.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE--EEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      +|+++|++|+|||||++++++.... .+.  ...|....+  ..... .+  ..+.+|||||...           +...
T Consensus         2 ki~vvG~~~vGKSsLi~~~~~~~~~-~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~~   66 (193)
T cd04118           2 KVVMLGKESVGKTSLVERYVHHRFL-VGP--YQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSER-----------YEAM   66 (193)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCcC-CcC--cccceeeEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhhh
Confidence            7899999999999999999986532 111  112222211  12222 23  3467999999765           2222


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ....+.++|++++|+|.++.-+... ..+++.+....   ...|+++|.||+|+..
T Consensus        67 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~  119 (193)
T cd04118          67 SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE---EHCKIYLCGTKSDLIE  119 (193)
T ss_pred             hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC---CCCCEEEEEEcccccc
Confidence            3345678899999999984422222 35565555431   1368999999999864

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.64  E-value=8.7e-15  Score=102.95  Aligned_cols=115  Identities=14%  Similarity=0.076  Sum_probs=73.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE-EEEEe--CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+|+++|++|+|||||++.+++......    ...|...... .+...  ....+.+|||||..+           +...
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~----~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~   65 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEE----YVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRL   65 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCC----CCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHH
Confidence            3789999999999999999998764322    1122222211 22221  123578999999764           2333


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+.++|++++|+|.+++.+...  ..|+..+... ..  ..|+++|.||.|+...
T Consensus        66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~--~~piilv~nK~Dl~~~  120 (187)
T cd04132          66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CP--GTPIMLVGLKTDLRKD  120 (187)
T ss_pred             HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CC--CCCEEEEEeChhhhhC
Confidence            3445788999999999985443333  2344444432 12  2599999999998653

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.64  E-value=5.8e-15  Score=116.32  Aligned_cols=118  Identities=16%  Similarity=0.144  Sum_probs=83.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccc--------------ccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   84 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~   84 (174)
                      +..+|+++|+.++|||||+++|++....              ...+...+.|.......+.+ ++..+.++||||+.+  
T Consensus        60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~--  136 (447)
T PLN03127         60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHAD--  136 (447)
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccc--
Confidence            3478999999999999999999743100              00112245566665555554 556889999999875  


Q ss_pred             CChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCc-EEEEEeCcCCCCC
Q 030624           85 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELED  153 (174)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~iv~tk~D~~~~  153 (174)
                               +..........+|++++|+|+.++....+.+.+..+....     .| +++++||+|+...
T Consensus       137 ---------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~g-----ip~iIvviNKiDlv~~  192 (447)
T PLN03127        137 ---------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG-----VPSLVVFLNKVDVVDD  192 (447)
T ss_pred             ---------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcC-----CCeEEEEEEeeccCCH
Confidence                     2222223344689999999998788888888887766542     35 5788999999853

>cd04126 Rab20 Rab20 subfamily

Probab=99.63  E-value=1.2e-14  Score=104.79  Aligned_cols=112  Identities=24%  Similarity=0.179  Sum_probs=74.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      +|+++|.+|+|||||++.+++......     ..|....+....+ ....+.+|||||....           .......
T Consensus         2 KIvivG~~~vGKTSLi~r~~~~~f~~~-----~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~-----------~~l~~~~   64 (220)
T cd04126           2 KVVLLGDMNVGKTSLLHRYMERRFKDT-----VSTVGGAFYLKQW-GPYNISIWDTAGREQF-----------HGLGSMY   64 (220)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCC-----CCccceEEEEEEe-eEEEEEEEeCCCcccc-----------hhhHHHH
Confidence            689999999999999999998764211     1233222332333 4456899999998762           2222335


Q ss_pred             cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          102 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      +..+|++++|+|.+++-+... ..++..+.+.....  .|+++|.||+|+..
T Consensus        65 ~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~--~piIlVgNK~DL~~  114 (220)
T cd04126          65 CRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANED--CLFAVVGNKLDLTE  114 (220)
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccccc
Confidence            678899999999986544444 23444444432222  58999999999865

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.63  E-value=3.4e-15  Score=107.55  Aligned_cols=115  Identities=20%  Similarity=0.295  Sum_probs=77.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccc----c----------cCCCCcceeeEEEEEEEe---------CCcEEEEEeC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKS----R----------ASSSGVTSTCEMQRTVLK---------DGQVVNVIDT   77 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~----~----------~~~~~~t~~~~~~~~~~~---------~~~~~~~iDt   77 (174)
                      +.|+++|+.++|||||+.+|+.......    +          +...+.|.........+.         ++..+.++||
T Consensus         1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT   80 (222)
T cd01885           1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS   80 (222)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence            4789999999999999999975431100    0          111233433333333342         1457889999


Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624           78 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus        78 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                      ||..+           +......++..+|++++|+|+.++....++..++.....   .  .|+++++||+|+.
T Consensus        81 PG~~~-----------f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~---~--~p~ilviNKiD~~  138 (222)
T cd01885          81 PGHVD-----------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE---R--VKPVLVINKIDRL  138 (222)
T ss_pred             CCccc-----------cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECCCcc
Confidence            99987           333334455667999999999888877777666554432   2  5899999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.63  E-value=1e-14  Score=121.25  Aligned_cols=123  Identities=20%  Similarity=0.188  Sum_probs=81.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh--HHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~--~~~~~~~~~~   97 (174)
                      ..+|+++|.+|+|||||+|+|+|.... .+ ...+.|.+.......+ ++..+.++||||..+.....  ....+.+.+.
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-vg-n~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQR-VG-NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCc-cC-CCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHH
Confidence            468999999999999999999997642 33 3355666655555555 67789999999998754311  1112222211


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                       ......+|++++|+|++ .+... ..+...+.+.     ..|+++++||+|+.+.
T Consensus        80 -~l~~~~aD~vI~VvDat-~ler~-l~l~~ql~e~-----giPvIvVlNK~Dl~~~  127 (772)
T PRK09554         80 -YILSGDADLLINVVDAS-NLERN-LYLTLQLLEL-----GIPCIVALNMLDIAEK  127 (772)
T ss_pred             -HHhccCCCEEEEEecCC-cchhh-HHHHHHHHHc-----CCCEEEEEEchhhhhc
Confidence             11346789999999998 43332 2233333332     2699999999998754

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.63  E-value=5.7e-15  Score=121.52  Aligned_cols=118  Identities=15%  Similarity=0.222  Sum_probs=81.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe---CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      +.++|+++|+.++|||||+++|++......  ...+.|.........+.   .+..+.+|||||+..           +.
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~--e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-----------F~  309 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQK--EAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-----------FS  309 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccc--cCCccccccceEEEEEEecCCceEEEEEECCcHHH-----------HH
Confidence            447999999999999999999987654322  12233333333333332   246899999999864           33


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ..+...+..+|++++|++++++....+.+.+..+...   .  .|+++++||+|+...+
T Consensus       310 ~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~---~--iPiIVViNKiDl~~~~  363 (742)
T CHL00189        310 SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA---N--VPIIVAINKIDKANAN  363 (742)
T ss_pred             HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc---C--ceEEEEEECCCccccC
Confidence            3333455677999999999877777777666554332   2  5899999999997653

>cd04116 Rab9 Rab9 subfamily

Probab=99.63  E-value=8.2e-15  Score=101.48  Aligned_cols=120  Identities=16%  Similarity=0.039  Sum_probs=73.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ..+|+++|++|+|||||++.+++.......  ....+........... ....+.++||||...           +....
T Consensus         5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~   71 (170)
T cd04116           5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER-----------FRSLR   71 (170)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCCcCc--CCceeeEEEEEEEEECCeEEEEEEEeCCChHH-----------HHHhH
Confidence            478999999999999999999876532221  1111111111222231 123568899999654           33334


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh--hhcCcEEEEEeCcCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE  152 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~~iv~tk~D~~~  152 (174)
                      ...+..+|++++|++.+++-+... ..+...+......  ....|++++.||+|+..
T Consensus        72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  128 (170)
T cd04116          72 TPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE  128 (170)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc
Confidence            445678899999999884432222 3444444443221  11258999999999864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.63  E-value=9.5e-15  Score=118.58  Aligned_cols=116  Identities=22%  Similarity=0.284  Sum_probs=84.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      +|+++|+.++|||||+++|++...-. ......+.|....+..+.+ .+..+.+||+||..+           +.+.+..
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~-----------f~~~~~~   69 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEK-----------FISNAIA   69 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHHH-----------HHHHHHh
Confidence            68999999999999999999854110 1122345666666666666 557899999999754           4444445


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+..+|++++|+|++++....+.+.+..+... +.   +++++|+||+|+.+.
T Consensus        70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~l-gi---~~iIVVlNK~Dlv~~  118 (581)
T TIGR00475        70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDLL-GI---PHTIVVITKADRVNE  118 (581)
T ss_pred             hhccCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEECCCCCCH
Confidence            66788999999999877777887777665443 21   249999999999865

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.63  E-value=9.7e-15  Score=118.49  Aligned_cols=116  Identities=19%  Similarity=0.270  Sum_probs=85.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc-c-ccc------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRA-F-KSR------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   86 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~-~-~~~------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~   86 (174)
                      +.|+++|+.++|||||+++|+.... + ..+            ....+.|.......+.| ++..+.+|||||+.+    
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~D----   76 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHAD----   76 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHH----
Confidence            5799999999999999999985321 1 111            11235677777777788 788999999999876    


Q ss_pred             hHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           87 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                             +...+...+..+|++++|+|+.++....++.++..+...   .  .|.++++||+|+...
T Consensus        77 -------F~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~---~--ip~IVviNKiD~~~a  131 (594)
T TIGR01394        77 -------FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL---G--LKPIVVINKIDRPSA  131 (594)
T ss_pred             -------HHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC---C--CCEEEEEECCCCCCc
Confidence                   222233344566999999999877777777777666553   2  578999999998654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.63  E-value=7.2e-15  Score=114.59  Aligned_cols=118  Identities=17%  Similarity=0.194  Sum_probs=81.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccc--------------ccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   84 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~   84 (174)
                      +..+++++|+.++|||||+++|++....              ...+...+.|.......+.+ ++..+.++||||+.+  
T Consensus        11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~~--   87 (396)
T PRK12735         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHAD--   87 (396)
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHHH--
Confidence            4488999999999999999999862110              01112345565554444444 566789999999753  


Q ss_pred             CChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCc-EEEEEeCcCCCCC
Q 030624           85 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELED  153 (174)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~iv~tk~D~~~~  153 (174)
                               +.......+..+|++++|+|+.++....+.+.+..+... +    .| +++++||+|+...
T Consensus        88 ---------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~-g----i~~iivvvNK~Dl~~~  143 (396)
T PRK12735         88 ---------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFLNKCDMVDD  143 (396)
T ss_pred             ---------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc-C----CCeEEEEEEecCCcch
Confidence                     334444556688999999999877777777777665543 2    35 4568999999753

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.63  E-value=2e-14  Score=100.00  Aligned_cols=116  Identities=17%  Similarity=0.149  Sum_probs=76.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+|+++|..|+|||||++.+.+.......    .+|..... ..... ++  ..+.++||||..+           +...
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~----~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~l   66 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFPDYH----DPTIEDAYKQQARI-DNEPALLDILDTAGQAE-----------FTAM   66 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCc----CCcccceEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHH
Confidence            68999999999999999998876532211    11211111 12222 23  4578999999875           3334


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...++..+|++++|+|.+++.+... ..+.+.+.+... ....|+++|.||+|+...
T Consensus        67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~  122 (172)
T cd04141          67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ  122 (172)
T ss_pred             hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc
Confidence            4445677899999999986655555 345555555422 223699999999998643

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>PRK12736 elongation factor Tu; Reviewed

Probab=99.63  E-value=2.5e-15  Score=117.06  Aligned_cols=118  Identities=15%  Similarity=0.194  Sum_probs=82.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   84 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~   84 (174)
                      +..+++++|+.++|||||+++|++.....              ..+...+.|.......+.. ++..+.++||||+.+  
T Consensus        11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~--   87 (394)
T PRK12736         11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHAD--   87 (394)
T ss_pred             CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHH--
Confidence            34889999999999999999998742110              1112345566554444433 566889999999753  


Q ss_pred             CChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCc-EEEEEeCcCCCCC
Q 030624           85 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELED  153 (174)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~iv~tk~D~~~~  153 (174)
                               +..........+|++++|+|+.++....+.+.+..+... +    .| +++++||+|+...
T Consensus        88 ---------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g----~~~~IvviNK~D~~~~  143 (394)
T PRK12736         88 ---------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-G----VPYLVVFLNKVDLVDD  143 (394)
T ss_pred             ---------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-C----CCEEEEEEEecCCcch
Confidence                     223333344677999999999878888888888776654 2    34 6789999999754

>cd04177 RSR1 RSR1 subgroup

Probab=99.63  E-value=1.1e-14  Score=100.74  Aligned_cols=117  Identities=21%  Similarity=0.172  Sum_probs=73.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+++++|.+|+|||||++++.+.......    ..|.... .....+. ....+.+|||||..+.           ....
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~   66 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESY----DPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF-----------TAMR   66 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCcchheEEEEEEECCEEEEEEEEeCCCcccc-----------hhhh
Confidence            57999999999999999999876532221    1111111 1222221 1246789999998763           2233


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..++++++|++.+++-+... ..+.+.+.+.... ...|++++.||.|+...
T Consensus        67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~~  121 (168)
T cd04177          67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLEDD  121 (168)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhcccc
Confidence            334566799999999885433332 4455555543322 23689999999998654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.62  E-value=1e-14  Score=114.80  Aligned_cols=119  Identities=20%  Similarity=0.261  Sum_probs=82.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccc--------------c---------------cCCCCcceeeEEEEEEEeCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKS--------------R---------------ASSSGVTSTCEMQRTVLKDG   69 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~~   69 (174)
                      +..+++++|+.++|||||++.|+.....-.              |               +...+.|.......+.+ ++
T Consensus         5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~~   83 (425)
T PRK12317          5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-DK   83 (425)
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-CC
Confidence            348899999999999999999984321100              1               11346677776666666 67


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCC--CCCHHHHHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                      ..+.++||||+.+.           .+.....+..+|++++|+|+++  .+...+...+..+... +.   +++++++||
T Consensus        84 ~~i~liDtpG~~~~-----------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~---~~iivviNK  148 (425)
T PRK12317         84 YYFTIVDCPGHRDF-----------VKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GI---NQLIVAINK  148 (425)
T ss_pred             eEEEEEECCCcccc-----------hhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CC---CeEEEEEEc
Confidence            88999999997652           2222233567899999999987  5656666666554432 21   468999999


Q ss_pred             cCCCCC
Q 030624          148 GDELED  153 (174)
Q Consensus       148 ~D~~~~  153 (174)
                      +|+...
T Consensus       149 ~Dl~~~  154 (425)
T PRK12317        149 MDAVNY  154 (425)
T ss_pred             cccccc
Confidence            999753

>cd00157 Rho Rho (Ras homology) family

Probab=99.62  E-value=6.3e-15  Score=101.96  Aligned_cols=117  Identities=18%  Similarity=0.114  Sum_probs=73.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+|+++|++|+|||||++++++...........   .......... .....+.++||||.....           ....
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~D~~g~~~~~-----------~~~~   66 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTV---FDNYSATVTVDGKQVNLGLWDTAGQEEYD-----------RLRP   66 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce---eeeeEEEEEECCEEEEEEEEeCCCccccc-----------ccch
Confidence            378999999999999999999876422211111   1111111111 123468899999988631           1112


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ..+..+|++++|+|.+++-+...  ..++..+.....   ..|+++|+||+|+....
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~  120 (171)
T cd00157          67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDDE  120 (171)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhch
Confidence            24467899999999984333222  345555554432   36999999999987663

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd00876 Ras Ras family

Probab=99.62  E-value=8.9e-15  Score=99.96  Aligned_cols=116  Identities=18%  Similarity=0.168  Sum_probs=72.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      +|+++|++|+|||||++++++.... .....  .+.......... .  ...+.++|+||...           +.....
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~--~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~~   65 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFV-EEYDP--TIEDSYRKTIVV-DGETYTLDILDTAGQEE-----------FSAMRD   65 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCC-cCcCC--ChhHeEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHHH
Confidence            4899999999999999999986532 22111  111112222222 2  24578999999765           222333


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+|++++|+|.++.-+... ..+...+.+.... ...|+++++||+|+...
T Consensus        66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~  119 (160)
T cd00876          66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENE  119 (160)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCccccc
Confidence            34566799999999874322222 4444445544321 23699999999999763

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.62  E-value=1.6e-14  Score=107.41  Aligned_cols=128  Identities=20%  Similarity=0.269  Sum_probs=76.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeeEEEEEEEe-C--CcEEEEEeCCCCCCCCCChHH-
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLK-D--GQVVNVIDTPGLFDFSAGSEF-   89 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~-~--~~~~~~iDtpG~~~~~~~~~~-   89 (174)
                      ..+++++|.+|+|||||||+|++.........      ....+........... .  ...+.++||||+.+....... 
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            47899999999999999999999765433210      1111222222222221 2  236899999999975433211 


Q ss_pred             ------HHHHHHHHHHh---------ccCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           90 ------VGKEIVKCIGM---------AKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        90 ------~~~~~~~~~~~---------~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                            +..++...+..         .-.++|++||+++++ .++.+.+.+.++.|.+..      ++|-|+.|+|.+.+
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~v------NvIPvIaKaD~lt~  157 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKRV------NVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS------EEEEEESTGGGS-H
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcccc------cEEeEEecccccCH
Confidence                  12222222211         134689999999985 468899999988888764      89999999999986

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.62  E-value=1e-14  Score=102.35  Aligned_cols=116  Identities=16%  Similarity=0.061  Sum_probs=78.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ...+|+++|..|+|||||++.++........    .+|..... ...... ....+.+|||+|...           +..
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~----~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~-----------~~~   68 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEIDTQRIELSLWDTSGSPY-----------YDN   68 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCcc----CCceeeeeEEEEEECCEEEEEEEEECCCchh-----------hHh
Confidence            3478999999999999999999876532221    12221111 122221 124689999999765           333


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ....++.++|++++|+|.+++-+...  ..|++.+.+.. .  ..|+++|.||.|+..
T Consensus        69 ~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-~--~~piilVgNK~DL~~  123 (182)
T cd04172          69 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-P--NTKMLLVGCKSDLRT  123 (182)
T ss_pred             hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-C--CCCEEEEeEChhhhc
Confidence            34456789999999999986544444  46777776653 2  269999999999854

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04131 Rnd Rnd subfamily

Probab=99.62  E-value=7.5e-15  Score=102.72  Aligned_cols=114  Identities=15%  Similarity=0.047  Sum_probs=76.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|.+|+|||||++.+.+......    ..+|..... ..+... ....+.+|||+|...           +....
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~-----------~~~~~   66 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPET----YVPTVFENYTASFEIDEQRIELSLWDTSGSPY-----------YDNVR   66 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCC----cCCceEEEEEEEEEECCEEEEEEEEECCCchh-----------hhhcc
Confidence            5799999999999999999998753222    112221111 122221 224578999999765           22233


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ...+..+|++++|+|.+++-+...  ..|++.+.+...   ..|+++|.||+|+..
T Consensus        67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~  119 (178)
T cd04131          67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRT  119 (178)
T ss_pred             hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhc
Confidence            346788999999999986655554  467777776532   258999999999853

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.62  E-value=1.5e-14  Score=103.01  Aligned_cols=117  Identities=17%  Similarity=0.183  Sum_probs=78.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE--EEEEEEe------CCcEEEEEeCCCCCCCCCChHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLK------DGQVVNVIDTPGLFDFSAGSEFVGKE   93 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~------~~~~~~~iDtpG~~~~~~~~~~~~~~   93 (174)
                      +|+++|.+|+|||||++.+++......    ...|..+.  .....+.      ....+.+|||+|...           
T Consensus         2 KIvlvGd~gVGKTSLi~~~~~~~f~~~----~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~-----------   66 (202)
T cd04102           2 RVLVVGDSGVGKSSLVHLICKNQVLGR----PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES-----------   66 (202)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCCC----CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh-----------
Confidence            689999999999999999998764322    12222222  1222221      123578999999876           


Q ss_pred             HHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHh-----------------hhhcCcEEEEEeCcCCCCC
Q 030624           94 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-----------------KKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        94 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~-----------------~~~~~~~~iv~tk~D~~~~  153 (174)
                      +......++.++|++++|+|.+++-+... ..|++.+.+...                 .....|+++|.||.|+.+.
T Consensus        67 ~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~  144 (202)
T cd04102          67 VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE  144 (202)
T ss_pred             HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence            44445557889999999999986544444 567766655321                 0112599999999998653

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04128 Spg1 Spg1p

Probab=99.62  E-value=1e-14  Score=102.42  Aligned_cols=111  Identities=14%  Similarity=0.115  Sum_probs=73.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE--EEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      +++++|..|+|||||++.+++......    ..+|....+  ..+.. ++  ..+.+|||+|...           +...
T Consensus         2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~----~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~~   65 (182)
T cd04128           2 KIGLLGDAQIGKTSLMVKYVEGEFDED----YIQTLGVNFMEKTISI-RGTEITFSIWDLGGQRE-----------FINM   65 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCC----CCCccceEEEEEEEEE-CCEEEEEEEEeCCCchh-----------HHHh
Confidence            689999999999999999987653221    112222222  22333 33  4579999999875           3334


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                      ...++..+|++++|+|.+++-+... ..|++.+.......  .| ++|.||+|+.
T Consensus        66 ~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~  117 (182)
T cd04128          66 LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLF  117 (182)
T ss_pred             hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhcc
Confidence            4456788999999999985544433 45666665542222  35 6889999985

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.62  E-value=2.4e-14  Score=106.43  Aligned_cols=145  Identities=21%  Similarity=0.171  Sum_probs=106.5

Q ss_pred             CCCCCcccccccCCCCCCceE----------------------EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceee
Q 030624            2 MGGSAIDDDWELTSPSNGERT----------------------VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC   59 (174)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~----------------------i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~   59 (174)
                      .|+.+-..|+.|.++.++.++                      |+++|-+++|||||++.++...+- . ......|...
T Consensus       119 kGG~GG~GN~~Fks~~nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPK-I-adYpFTTL~P  196 (369)
T COG0536         119 KGGRGGLGNAHFKSSVNRAPRFATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPK-I-ADYPFTTLVP  196 (369)
T ss_pred             cCCCCCccchhhcCcccCCcccCCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCc-c-cCCccccccC
Confidence            356666777777777766554                      899999999999999999987642 2 2334445544


Q ss_pred             EEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCC---HH-H-HHHHHHHHHHHh
Q 030624           60 EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS---QE-E-EAALHSLQTLFG  134 (174)
Q Consensus        60 ~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~---~~-~-~~~l~~l~~~~~  134 (174)
                      +.-.+....+..+.+-|.||+.++.....-+..++++.+.++    .+++.|+|.+ +.+   +. + ..+...|..+..
T Consensus       197 nLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt----~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~  271 (369)
T COG0536         197 NLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT----RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSP  271 (369)
T ss_pred             cccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh----heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhH
Confidence            544444435778999999999999888888899999998877    8999999987 333   22 2 455566666644


Q ss_pred             hhhcCcEEEEEeCcCCCCC
Q 030624          135 KKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       135 ~~~~~~~~iv~tk~D~~~~  153 (174)
                      .-..+|.+||.||+|...+
T Consensus       272 ~L~~K~~ivv~NKiD~~~~  290 (369)
T COG0536         272 KLAEKPRIVVLNKIDLPLD  290 (369)
T ss_pred             HhccCceEEEEeccCCCcC
Confidence            4455799999999996554

>cd04134 Rho3 Rho3 subfamily

Probab=99.61  E-value=7.5e-15  Score=103.63  Aligned_cols=115  Identities=19%  Similarity=0.120  Sum_probs=74.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ++|+++|++|+|||||++.+.+.......    .+|..... ...... ....+.++||||....           ....
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~-----------~~l~   65 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVY----EPTVFENYVHDIFVDGLHIELSLWDTAGQEEF-----------DRLR   65 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCcc----CCcceeeeEEEEEECCEEEEEEEEECCCChhc-----------cccc
Confidence            47899999999999999999987643221    12221111 112221 1246789999998652           2223


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|++.+++-+...  ..|+..+....   ...|+++|.||+|+...
T Consensus        66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~  119 (189)
T cd04134          66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREA  119 (189)
T ss_pred             cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccC
Confidence            345678899999999985433333  34666666542   13699999999998754

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PRK12739 elongation factor G; Reviewed

Probab=99.61  E-value=9.9e-15  Score=120.90  Aligned_cols=120  Identities=22%  Similarity=0.271  Sum_probs=87.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccc--ccc--------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCC
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAF--KSR--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF   81 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~--~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~   81 (174)
                      .+-++|+++|+.++|||||+++|+.....  ..+              ....+.|.........| ++..+.++||||+.
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~   84 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHV   84 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHH
Confidence            34578999999999999999999742110  000              11345677766777777 78899999999986


Q ss_pred             CCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           82 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      +       ...+    +..++..+|++++|+|+.++....++..+..+....     .|.++++||+|+...+
T Consensus        85 ~-------f~~e----~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~-----~p~iv~iNK~D~~~~~  141 (691)
T PRK12739         85 D-------FTIE----VERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYG-----VPRIVFVNKMDRIGAD  141 (691)
T ss_pred             H-------HHHH----HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcC-----CCEEEEEECCCCCCCC
Confidence            4       1223    333445569999999998888888887777665542     5889999999998653

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1.1e-14  Score=99.99  Aligned_cols=125  Identities=14%  Similarity=0.141  Sum_probs=92.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEE--EEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR--TVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ..+++++|..++||||||+..+-...-    .....|....+..  +.+. ...++.+|||+|+.+           ++.
T Consensus        22 ~~KlVflGdqsVGKTslItRf~yd~fd----~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQER-----------Frs   86 (221)
T KOG0094|consen   22 KYKLVFLGDQSVGKTSLITRFMYDKFD----NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-----------FRS   86 (221)
T ss_pred             EEEEEEEccCccchHHHHHHHHHhhhc----ccccceeeeEEEEEEEEEcCcEEEEEEEecccHHH-----------Hhh
Confidence            478999999999999999998855422    1233343333332  2221 234679999999998           778


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHH
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLED  160 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~  160 (174)
                      .+..+++++.++++|+|.++.-+.+. .+|++.+....+.+. ..+++|.||.|+.++.+...++
T Consensus        87 lipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dkrqvs~eE  150 (221)
T KOG0094|consen   87 LIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDKRQVSIEE  150 (221)
T ss_pred             hhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccchhhhhHHH
Confidence            88889999999999999987766665 789888888766541 3678999999999876544444

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.61  E-value=1.4e-14  Score=119.94  Aligned_cols=121  Identities=21%  Similarity=0.234  Sum_probs=86.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccc--cc--------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCC
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFK--SR--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   80 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~--~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~   80 (174)
                      ..+-++|+++|+.++|||||+|+|+......  .+              ....+.|.........| ++..+.++||||+
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~   85 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGH   85 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCC
Confidence            3445899999999999999999997422110  00              01235666666777777 7889999999999


Q ss_pred             CCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           81 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      .++.       .+    +..++..+|++++|+|+.++....+...+..+....     .|+++++||+|+...+
T Consensus        86 ~~~~-------~~----~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~-----~p~ivviNK~D~~~~~  143 (689)
T TIGR00484        86 VDFT-------VE----VERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYE-----VPRIAFVNKMDKTGAN  143 (689)
T ss_pred             cchh-------HH----HHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcC-----CCEEEEEECCCCCCCC
Confidence            8632       12    223445569999999998777777777766554432     5889999999998654

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.61  E-value=4.8e-14  Score=102.58  Aligned_cols=88  Identities=20%  Similarity=0.263  Sum_probs=59.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      +++++|++|+|||||+|+|++.... .+ .....|.......+.+ ++..+.++||||+.+..........++    ...
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~-v~-~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~   74 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSE-VA-AYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQV----IAV   74 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCcc-cc-CCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence            6899999999999999999997632 22 1223343333334445 677899999999876432222222233    234


Q ss_pred             cCCceEEEEEEeCCC
Q 030624          102 KDGIHAVLVVFSVRS  116 (174)
Q Consensus       102 ~~~~~~il~v~~~~~  116 (174)
                      +..+|++++|+|+++
T Consensus        75 ~~~ad~il~V~D~t~   89 (233)
T cd01896          75 ARTADLILMVLDATK   89 (233)
T ss_pred             hccCCEEEEEecCCc
Confidence            667799999999863

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.61  E-value=1.2e-14  Score=113.28  Aligned_cols=118  Identities=17%  Similarity=0.159  Sum_probs=83.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   83 (174)
                      .+..+++++|+.++|||||+++|++.....              ..+...+.|.......+.+ ++..+.++||||+.+ 
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~-   87 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHAD-   87 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHHH-
Confidence            345889999999999999999998732110              0111345555554444444 456789999999753 


Q ss_pred             CCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEE-EEEeCcCCCC
Q 030624           84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI-VVFTGGDELE  152 (174)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-iv~tk~D~~~  152 (174)
                                +..........+|++++|+|+.++....+.+++..+....     .|.+ +++||+|+..
T Consensus        88 ----------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g-----~p~iiVvvNK~D~~~  142 (396)
T PRK00049         88 ----------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG-----VPYIVVFLNKCDMVD  142 (396)
T ss_pred             ----------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcC-----CCEEEEEEeecCCcc
Confidence                      4444445567889999999998788888888887766542     4654 6899999975

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.61  E-value=6.2e-15  Score=101.68  Aligned_cols=118  Identities=19%  Similarity=0.231  Sum_probs=69.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      +|+++|++|+|||||+++++........ ........  ...... +.  ..+.+|||||.....  ..    ...    
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~~~~~i~D~~g~~~~~--~~----~~~----   66 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEY-DPNLESLY--SRQVTI-DGEQVSLEILDTAGQQQAD--TE----QLE----   66 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCcccccc-CCChHHhc--eEEEEE-CCEEEEEEEEECCCCcccc--cc----hHH----
Confidence            4799999999999999998864421111 11111111  112222 22  357899999988410  00    011    


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+..+|++++|+|.++.-+... ..++..+.+........|+++|.||+|+...
T Consensus        67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  121 (165)
T cd04146          67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY  121 (165)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence            23456799999999985433332 4455555554211223689999999998643

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.61  E-value=1.8e-14  Score=98.85  Aligned_cols=116  Identities=19%  Similarity=0.155  Sum_probs=71.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      +|+++|++|+|||||+++++...............   ........ ....+.++||||..+           +......
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~D~~g~~~-----------~~~~~~~   67 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS---YRKKVVLDGEDVQLNILDTAGQED-----------YAAIRDN   67 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh---EEEEEEECCEEEEEEEEECCChhh-----------hhHHHHH
Confidence            78999999999999999999765332111111111   11111221 234688999999775           2233344


Q ss_pred             ccCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ....+|+++++++..++-+.. ...+...+..... ....|+++|+||+|+..
T Consensus        68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~  119 (164)
T cd04139          68 YHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED  119 (164)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence            566779999999987432222 1344444444321 22369999999999976

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PRK00007 elongation factor G; Reviewed

Probab=99.61  E-value=1.4e-14  Score=120.03  Aligned_cols=121  Identities=19%  Similarity=0.236  Sum_probs=87.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhC---Ccccccc-------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCC
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILG---RRAFKSR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   80 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~---~~~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~   80 (174)
                      ..+-++|+++|+.++|||||+++|+.   .......             ....+.|.........| ++..+.++||||+
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~   85 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGH   85 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCc
Confidence            33458999999999999999999973   2111000             01335666666667777 7889999999998


Q ss_pred             CCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           81 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      .++       ..++.+    +...+|++++|+|+.+++...+...+..+....     .|.++++||+|+...+
T Consensus        86 ~~f-------~~ev~~----al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~-----~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         86 VDF-------TIEVER----SLRVLDGAVAVFDAVGGVEPQSETVWRQADKYK-----VPRIAFVNKMDRTGAD  143 (693)
T ss_pred             HHH-------HHHHHH----HHHHcCEEEEEEECCCCcchhhHHHHHHHHHcC-----CCEEEEEECCCCCCCC
Confidence            651       123333    344559999999998888888888887776653     5789999999998764

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.61  E-value=1.3e-14  Score=101.24  Aligned_cols=117  Identities=13%  Similarity=0.115  Sum_probs=84.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+..+|+++|+.||||||+++.|.......     ..+|...+...+.+ ++..+.++|.+|...           ++..
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~-~~~~~~~~d~gG~~~-----------~~~~   74 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY-KGYSLTIWDLGGQES-----------FRPL   74 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE-TTEEEEEEEESSSGG-----------GGGG
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee-CcEEEEEEecccccc-----------cccc
Confidence            456899999999999999999998754322     33455555666666 788999999999765           5667


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh--hcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~~~  153 (174)
                      ++..+..+|+++||+|.++.- . -.+..+.|.+.+...  ...|++|+.||.|....
T Consensus        75 w~~y~~~~~~iIfVvDssd~~-~-l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~  130 (175)
T PF00025_consen   75 WKSYFQNADGIIFVVDSSDPE-R-LQEAKEELKELLNDPELKDIPILILANKQDLPDA  130 (175)
T ss_dssp             GGGGHTTESEEEEEEETTGGG-G-HHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred             ceeeccccceeEEEEecccce-e-ecccccchhhhcchhhcccceEEEEeccccccCc
Confidence            777888999999999998432 1 222333344444332  23699999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.61  E-value=1.5e-14  Score=101.09  Aligned_cols=117  Identities=21%  Similarity=0.202  Sum_probs=71.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|++|+|||||++.+++........   +.+.......... ..  ..+.++||||..+           +....
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~   66 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYY---PTIENTFSKIIRY-KGQDYHLEIVDTAGQDE-----------YSILP   66 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccC---cchhhhEEEEEEE-CCEEEEEEEEECCChHh-----------hHHHH
Confidence            689999999999999999999765321111   1111111122222 22  3468999999765           22333


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..++..+|++++++|.++...... ..+.+.+.+.... ...|+++++||+|+...
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~  121 (180)
T cd04137          67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHTQ  121 (180)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhhc
Confidence            345567799999999985332222 3333444443221 22589999999998643

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.61  E-value=7.1e-15  Score=100.92  Aligned_cols=116  Identities=18%  Similarity=0.233  Sum_probs=70.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      ++|+++|++|+|||||+|.|.+.....      ..+.     ...+ ...  .+|||||.....   ....+.+.    .
T Consensus         2 ~~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~-----~v~~-~~~--~~iDtpG~~~~~---~~~~~~~~----~   60 (158)
T PRK15467          2 KRIAFVGAVGAGKTTLFNALQGNYTLA------RKTQ-----AVEF-NDK--GDIDTPGEYFSH---PRWYHALI----T   60 (158)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCccC------ccce-----EEEE-CCC--CcccCCccccCC---HHHHHHHH----H
Confidence            479999999999999999999864211      1111     1222 111  269999986532   12222222    2


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhcc
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  164 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~  164 (174)
                      .+.++|++++|+|+++....... +   +... ..  ..|+++++||+|+...+...+.+++++
T Consensus        61 ~~~~ad~il~v~d~~~~~s~~~~-~---~~~~-~~--~~~ii~v~nK~Dl~~~~~~~~~~~~~~  117 (158)
T PRK15467         61 TLQDVDMLIYVHGANDPESRLPA-G---LLDI-GV--SKRQIAVISKTDMPDADVAATRKLLLE  117 (158)
T ss_pred             HHhcCCEEEEEEeCCCcccccCH-H---HHhc-cC--CCCeEEEEEccccCcccHHHHHHHHHH
Confidence            35678999999999854332222 2   1221 11  258999999999876544445555544

>cd04167 Snu114p Snu114p subfamily

Probab=99.60  E-value=1.1e-14  Score=104.62  Aligned_cols=115  Identities=20%  Similarity=0.291  Sum_probs=73.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccc-------c----------cCCCCcceeeEEEEEEEe----CCcEEEEEeCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKS-------R----------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPG   79 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~-------~----------~~~~~~t~~~~~~~~~~~----~~~~~~~iDtpG   79 (174)
                      ++++++|+.|+|||||+++|+.......       +          ....+.+.........+.    ....+.++||||
T Consensus         1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG   80 (213)
T cd04167           1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG   80 (213)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence            4689999999999999999986432111       0          011122322223333331    235689999999


Q ss_pred             CCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624           80 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                      ..++           .......+..+|++++|+|+.+.....+..+++.+..   ..  .|+++++||+|+.
T Consensus        81 ~~~f-----------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~---~~--~p~iiviNK~D~~  136 (213)
T cd04167          81 HVNF-----------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL---EG--LPIVLVINKIDRL  136 (213)
T ss_pred             Ccch-----------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---cC--CCEEEEEECcccC
Confidence            8862           2223334556799999999986766665555444332   12  5899999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.60  E-value=2.1e-14  Score=117.01  Aligned_cols=117  Identities=22%  Similarity=0.317  Sum_probs=84.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .|+++|+.++|||||+++|+|...-. ......+.|....+......++..+.+|||||+.+           +.+.+..
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-----------fi~~m~~   70 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-----------FLSNMLA   70 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-----------HHHHHHH
Confidence            68999999999999999999854211 11223456666555544443456789999999854           3333444


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+..+|++++|+|+++++...+.+.+..+... +.   +++++|+||+|+...
T Consensus        71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l-gi---~~iIVVlNKiDlv~~  119 (614)
T PRK10512         71 GVGGIDHALLVVACDDGVMAQTREHLAILQLT-GN---PMLTVALTKADRVDE  119 (614)
T ss_pred             HhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEECCccCCH
Confidence            56778999999999888888888888766543 21   356899999999754

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.60  E-value=7e-15  Score=114.66  Aligned_cols=120  Identities=17%  Similarity=0.244  Sum_probs=81.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc------cc--------cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRA------FK--------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~------~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   83 (174)
                      .+..+++++|+.++|||||+++|++...      ..        ..+...+.|.......+.. ++..+.++||||+.+ 
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~-   87 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD-   87 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH-
Confidence            3458999999999999999999984311      00        0111245565554444433 456789999999865 


Q ss_pred             CCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                                +..........+|++++|+|+.++....+.+.+..+... +.   +++++++||+|+...
T Consensus        88 ----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~~~  143 (394)
T TIGR00485        88 ----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-GV---PYIVVFLNKCDMVDD  143 (394)
T ss_pred             ----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEecccCCH
Confidence                      222223344577999999999877888888887776554 21   345578999999754

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=9.7e-15  Score=112.79  Aligned_cols=129  Identities=16%  Similarity=0.160  Sum_probs=96.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      ..++++|++++|||||+|+|+..+..-.. ...+.|.+.-...+.. ++.+++++||+|+-+  .+.+.....-.+.++.
T Consensus       269 l~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe--~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  269 LQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTV-NGVPVRLSDTAGIRE--ESNDGIEALGIERARK  344 (531)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeec-CCeEEEEEecccccc--ccCChhHHHhHHHHHH
Confidence            88999999999999999999998754332 3355666666666665 899999999999998  4455566666677777


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh-h------cCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK-I------FDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~-~------~~~~~iv~tk~D~~~~  153 (174)
                      ...++|++++|+|+.+..+..+..+.+.+......- .      +.+.+++.||.|...+
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~  404 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK  404 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence            888999999999996666666666555555542211 1      2578899999998765

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.60  E-value=1.5e-14  Score=100.51  Aligned_cols=112  Identities=24%  Similarity=0.160  Sum_probs=72.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           23 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        23 i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      |+++|+.|+|||||++++++.......    ..+..... ..... ++  ..+.++||||....           .....
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~~~   64 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDY----VPTVFENYSADVEV-DGKPVELGLWDTAGQEDY-----------DRLRP   64 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCC----CCcEEeeeeEEEEE-CCEEEEEEEEECCCCccc-----------chhch
Confidence            589999999999999999986642221    11221111 12222 23  35789999998752           22223


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+..+|++++|+|.++.-+...  ..|+..+....   ...|+++|.||+|+...
T Consensus        65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~  117 (174)
T smart00174       65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLRED  117 (174)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhC
Confidence            45678899999999985433332  34666665542   23699999999998753

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.60  E-value=2.5e-14  Score=114.76  Aligned_cols=124  Identities=15%  Similarity=0.168  Sum_probs=83.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc--cccccc------------------CCCCcceeeEEEEEEEeCCcEEEEEeC
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRR--AFKSRA------------------SSSGVTSTCEMQRTVLKDGQVVNVIDT   77 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~--~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~iDt   77 (174)
                      .+.++++++|+.++|||||+++|+-..  ....+.                  ...+.+.......+.+ ++..+.++||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDT   87 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDT   87 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEEC
Confidence            445899999999999999999985311  111110                  0113444555566666 7788999999


Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhh
Q 030624           78 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET  157 (174)
Q Consensus        78 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~  157 (174)
                      ||+.+           +......++..+|++++|+|+.+++......+++.....     ..|+++++||+|+...+...
T Consensus        88 PG~~d-----------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~-----~~PiivviNKiD~~~~~~~~  151 (527)
T TIGR00503        88 PGHED-----------FSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLR-----DTPIFTFMNKLDRDIRDPLE  151 (527)
T ss_pred             CChhh-----------HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECccccCCCHHH
Confidence            99975           222222344567999999999877777766666544332     26899999999987544333


Q ss_pred             H
Q 030624          158 L  158 (174)
Q Consensus       158 ~  158 (174)
                      +
T Consensus       152 l  152 (527)
T TIGR00503       152 L  152 (527)
T ss_pred             H
Confidence            3

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.60  E-value=1.5e-14  Score=102.87  Aligned_cols=114  Identities=23%  Similarity=0.257  Sum_probs=72.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcce-eeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS-TCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +|+++|.+|+|||||++.+++.......    ..|. ......+.+ .+  ..+.++||||....           ....
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-----------~~~~   64 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKY----RRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSF-----------PAMR   64 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccC----CCchhhheeEEEEE-CCEEEEEEEEECCCchhh-----------hHHH
Confidence            4799999999999999999986643211    1111 111222333 23  46789999997752           2223


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ...+..+|++++|+|.++..+... ..++..+.+.... ...|+++++||+|+..
T Consensus        65 ~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~  118 (198)
T cd04147          65 KLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLE  118 (198)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEcccccc
Confidence            335678899999999985433332 3444445444321 2369999999999865

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=7.3e-15  Score=100.72  Aligned_cols=125  Identities=21%  Similarity=0.195  Sum_probs=85.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+++++|.+|+|||||+-............++.+...-+...... .....+.+|||.|..+           +.....
T Consensus         5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~-~~~ikfeIWDTAGQER-----------y~slap   72 (200)
T KOG0092|consen    5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVD-DNTIKFEIWDTAGQER-----------YHSLAP   72 (200)
T ss_pred             eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeC-CcEEEEEEEEcCCccc-----------cccccc
Confidence            3789999999999999998887766443322333222222222221 1235678999999998           445556


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhH
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL  158 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~  158 (174)
                      ..+++++++|+|+|.++.-+... +.|++.|++..+++  ..+.+|.||+|+........
T Consensus        73 MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~R~V~~  130 (200)
T KOG0092|consen   73 MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLERREVEF  130 (200)
T ss_pred             ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhcccccH
Confidence            78999999999999994433333 78888888876533  35668999999987443443

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.60  E-value=4.9e-15  Score=98.63  Aligned_cols=114  Identities=21%  Similarity=0.237  Sum_probs=74.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .|++++|++|||||||+++|.+....      ...|..     +.+ .+   .+|||||=+-       -...+...+..
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~~------~~KTq~-----i~~-~~---~~IDTPGEyi-------E~~~~y~aLi~   59 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEIR------YKKTQA-----IEY-YD---NTIDTPGEYI-------ENPRFYHALIV   59 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCCC------cCccce-----eEe-cc---cEEECChhhe-------eCHHHHHHHHH
Confidence            68999999999999999999986531      112221     222 12   2599999663       12334445555


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC--CCChhhHHHHhcc
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL--EDNDETLEDYLGR  164 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~--~~~~~~~~~~~~~  164 (174)
                      ....+|.|+++.|++++...-...+...    +    .+|++-|+||+|+.  +.+.+..+++++.
T Consensus        60 ta~dad~V~ll~dat~~~~~~pP~fa~~----f----~~pvIGVITK~Dl~~~~~~i~~a~~~L~~  117 (143)
T PF10662_consen   60 TAQDADVVLLLQDATEPRSVFPPGFASM----F----NKPVIGVITKIDLPSDDANIERAKKWLKN  117 (143)
T ss_pred             HHhhCCEEEEEecCCCCCccCCchhhcc----c----CCCEEEEEECccCccchhhHHHHHHHHHH
Confidence            5667899999999985544333333322    2    15899999999998  4433344556655

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PLN03126 Elongation factor Tu; Provisional

Probab=99.60  E-value=8.3e-15  Score=116.12  Aligned_cols=120  Identities=16%  Similarity=0.213  Sum_probs=84.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccc--------------ccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   83 (174)
                      .+..+++++|+.++|||||+++|++....              .......+.|.......+.+ ++..+.++||||+.+ 
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~-  156 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHAD-  156 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHH-
Confidence            34578999999999999999999852210              01122345565555555555 677899999999875 


Q ss_pred             CCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                                +.......+..+|++++|+|+.++....+++++..+... +.   +++++++||+|+...
T Consensus       157 ----------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi---~~iIvvvNK~Dl~~~  212 (478)
T PLN03126        157 ----------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GV---PNMVVFLNKQDQVDD  212 (478)
T ss_pred             ----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEecccccCH
Confidence                      333333344577999999999878888888888765554 21   247889999999764

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.60  E-value=1.7e-14  Score=100.69  Aligned_cols=114  Identities=22%  Similarity=0.127  Sum_probs=75.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE-EEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+++++|.+|+|||||++.+........    ..+|...... .... .+  ..+.+|||+|..+           +...
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~----~~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~   65 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSE----YVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQED-----------YDRL   65 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeeeeEEEEEE-CCEEEEEEEEECCCccc-----------hhhh
Confidence            5799999999999999999997653222    1122222111 2223 33  4578999999876           2223


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+..+|++++|+|.+++-+...  ..|+..+.... .  ..|+++|.||+|+...
T Consensus        66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-~--~~piilvgnK~Dl~~~  120 (175)
T cd01874          66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-P--KTPFLLVGTQIDLRDD  120 (175)
T ss_pred             hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECHhhhhC
Confidence            3346678899999999985544433  24666665542 2  2699999999998643

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01892 Miro2 Miro2 subfamily

Probab=99.60  E-value=3e-14  Score=98.83  Aligned_cols=117  Identities=14%  Similarity=-0.000  Sum_probs=70.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|.+|+|||||++.+++....... ..+..........+.+ ++  ..+.++|++|.....           ...
T Consensus         5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~-~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~-----------~~~   71 (169)
T cd01892           5 FLCFVLGAKGSGKSALLRAFLGRSFSLNA-YSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAI-----------LLN   71 (169)
T ss_pred             EEEEEECCCCCcHHHHHHHHhCCCCCccc-CCCccCcceEEEEEEE-CCeEEEEEEEecCCccccc-----------ccc
Confidence            78999999999999999999987632011 1111111111222333 33  357789999977532           122


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+.++|++++|+|.+++-+..  ...+++... ......|+++|+||+|+...
T Consensus        72 ~~~~~~~d~~llv~d~~~~~s~~--~~~~~~~~~-~~~~~~p~iiv~NK~Dl~~~  123 (169)
T cd01892          72 DAELAACDVACLVYDSSDPKSFS--YCAEVYKKY-FMLGEIPCLFVAAKADLDEQ  123 (169)
T ss_pred             hhhhhcCCEEEEEEeCCCHHHHH--HHHHHHHHh-ccCCCCeEEEEEEccccccc
Confidence            23457889999999997442211  112222222 11123699999999998643

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04148 RGK RGK subfamily

Probab=99.60  E-value=2.7e-14  Score=103.21  Aligned_cols=116  Identities=20%  Similarity=0.113  Sum_probs=70.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccc-ccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      +|+++|++|+|||||++.+++.... .......+..  .....+... ....+.+|||||...      .    ...   
T Consensus         2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~--~~~~~i~~~~~~~~l~i~Dt~G~~~------~----~~~---   66 (221)
T cd04148           2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDD--TYERTVSVDGEESTLVVIDHWEQEM------W----TED---   66 (221)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcccc--ceEEEEEECCEEEEEEEEeCCCcch------H----HHh---
Confidence            7899999999999999999765432 1111111101  111122221 235688999999872      1    111   


Q ss_pred             hccC-CceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKD-GIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~-~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+.. .+|++++|+|.+++-+... ..++..+.+.. .....|+++|.||+|+...
T Consensus        67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~  121 (221)
T cd04148          67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLARS  121 (221)
T ss_pred             HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhcccc
Confidence            1223 7899999999985433332 45555555432 1123699999999998654

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.59  E-value=2.9e-14  Score=103.43  Aligned_cols=115  Identities=14%  Similarity=0.038  Sum_probs=77.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+|+++|..|+|||||++.+++......    ..+|....+ ..+... ....+.+|||+|...           +...
T Consensus        13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~----y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~-----------~~~~   77 (232)
T cd04174          13 RCKLVLVGDVQCGKTAMLQVLAKDCYPET----YVPTVFENYTAGLETEEQRVELSLWDTSGSPY-----------YDNV   77 (232)
T ss_pred             eEEEEEECCCCCcHHHHHHHHhcCCCCCC----cCCceeeeeEEEEEECCEEEEEEEEeCCCchh-----------hHHH
Confidence            47899999999999999999987653211    112221111 112221 234689999999765           3334


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ...++.++|++++|+|.+++-+...  ..|++.+.+...   ..|+++|.||+|+..
T Consensus        78 ~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~  131 (232)
T cd04174          78 RPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLRT  131 (232)
T ss_pred             HHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccccc
Confidence            4456789999999999986555443  467777766532   258999999999853

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.59  E-value=8.2e-15  Score=98.63  Aligned_cols=101  Identities=19%  Similarity=0.240  Sum_probs=65.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      +|+++|++|+|||||+|++++....      ...|.     ...+ ..   .++||||...   .    ...+.+.+...
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~-----~~~~-~~---~~iDt~G~~~---~----~~~~~~~~~~~   59 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQ-----AVEY-ND---GAIDTPGEYV---E----NRRLYSALIVT   59 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc------cccce-----eEEE-cC---eeecCchhhh---h----hHHHHHHHHHH
Confidence            7899999999999999999987521      11122     1223 22   5899999742   1    11122222234


Q ss_pred             cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          102 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      +.++|++++|+|++++.+.....+.+.    ..    .|+++|+||+|+..
T Consensus        60 ~~~ad~vilv~d~~~~~s~~~~~~~~~----~~----~p~ilv~NK~Dl~~  102 (142)
T TIGR02528        60 AADADVIALVQSATDPESRFPPGFASI----FV----KPVIGLVTKIDLAE  102 (142)
T ss_pred             hhcCCEEEEEecCCCCCcCCChhHHHh----cc----CCeEEEEEeeccCC
Confidence            788999999999986655544333321    11    48999999999864

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK10218 GTP-binding protein; Provisional

Probab=99.59  E-value=4.4e-14  Score=114.67  Aligned_cols=117  Identities=19%  Similarity=0.229  Sum_probs=84.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc-ccc-c------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRA-FKS-R------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~-~~~-~------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      -++|+++|+.++|||||+++|+.... +.. +            ....+.|.......+.| ++..+.+|||||..++  
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df--   81 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADF--   81 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchh--
Confidence            47899999999999999999986321 111 1            12235566666666666 7788999999998873  


Q ss_pred             ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                               ...+...+..+|++++|+|+.++....++.++..+...   .  .|.++++||+|....
T Consensus        82 ---------~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~---g--ip~IVviNKiD~~~a  135 (607)
T PRK10218         82 ---------GGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY---G--LKPIVVINKVDRPGA  135 (607)
T ss_pred             ---------HHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc---C--CCEEEEEECcCCCCC
Confidence                     22333455677999999999877777777776655443   2  578999999998754

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.59  E-value=3.1e-14  Score=102.70  Aligned_cols=115  Identities=18%  Similarity=0.071  Sum_probs=73.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|..|+|||||++.+++...+....    +|....+ ..+... ....+.+|||+|...           +....
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~----pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~-----------~~~l~   66 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYV----PTVFENYTASFEIDKRRIELNMWDTSGSSY-----------YDNVR   66 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccC----CccccceEEEEEECCEEEEEEEEeCCCcHH-----------HHHHh
Confidence            579999999999999999999866432211    1211111 122221 234578899999765           33344


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..++..+|++++|+|.+++-+...  ..|...+.... .  ..|+++|.||+|+...
T Consensus        67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~--~~piiLVgnK~DL~~~  120 (222)
T cd04173          67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-P--NAKVVLVGCKLDMRTD  120 (222)
T ss_pred             HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEEECcccccc
Confidence            456889999999999985533332  23443333322 2  2589999999998653

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01875 RhoG RhoG subfamily

Probab=99.58  E-value=3.1e-14  Score=100.64  Aligned_cols=116  Identities=18%  Similarity=0.061  Sum_probs=75.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE-EEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+++++|..|+|||||++.+........    ..+|....+. ..... +...+.+|||+|...           +...
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~-----------~~~l   67 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKE----YIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE-----------YDRL   67 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcC----CCCceEeeeEEEEEECCEEEEEEEEECCCchh-----------hhhh
Confidence            36899999999999999999887653212    1122221111 11221 234678999999876           3334


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+.++|++++|+|.+++-+....  .|...+.... .  ..|+++|.||.|+...
T Consensus        68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~~~  122 (191)
T cd01875          68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-P--NVPILLVGTKKDLRND  122 (191)
T ss_pred             hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEEeChhhhcC
Confidence            44567889999999999855443332  3555454432 2  3699999999998643

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.58  E-value=1.1e-13  Score=93.85  Aligned_cols=117  Identities=22%  Similarity=0.220  Sum_probs=68.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|.+|+|||||++.+++...+ .. .....+.........+ .+  ..+.++|+||..+..           ...
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~-~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~~~   67 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFI-TE-YKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYR-----------AIR   67 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCc-Cc-CCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccch-----------HHH
Confidence            68999999999999999999998732 22 2223333333333334 44  568899999966521           111


Q ss_pred             HhccCCceEEEEEEeCCCC-CCHH--HHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSR-FSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~-~~~~--~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ......++.+++++|.... .+..  ...+...+......  ..|+++++||+|+...
T Consensus        68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~  123 (161)
T TIGR00231        68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA  123 (161)
T ss_pred             HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc
Confidence            1222334555555555422 1111  12344444444322  3689999999999764

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PLN00023 GTP-binding protein; Provisional

Probab=99.58  E-value=5.9e-14  Score=105.23  Aligned_cols=127  Identities=18%  Similarity=0.201  Sum_probs=83.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe--------------CCcEEEEEeCCC
Q 030624           14 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------------DGQVVNVIDTPG   79 (174)
Q Consensus        14 ~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~~~iDtpG   79 (174)
                      ..+.....+|+++|..|+|||||++.+++.........+.+.+.  ....+.+.              +...+.+|||+|
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~--~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG   92 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTV--GVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG   92 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeE--EEEEEEECCcccccccccccCCceEEEEEEECCC
Confidence            45556668999999999999999999997653211111111111  11222221              123589999999


Q ss_pred             CCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh----------hhcCcEEEEEeCc
Q 030624           80 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK----------KIFDYMIVVFTGG  148 (174)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~----------~~~~~~~iv~tk~  148 (174)
                      ...           +..+...++.+++++|+|+|.++.-+... ..|++.+......          ....+++||.||+
T Consensus        93 qEr-----------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~  161 (334)
T PLN00023         93 HER-----------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKA  161 (334)
T ss_pred             Chh-----------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECc
Confidence            876           45555667889999999999985443333 5677777664210          0125899999999


Q ss_pred             CCCCC
Q 030624          149 DELED  153 (174)
Q Consensus       149 D~~~~  153 (174)
                      |+...
T Consensus       162 DL~~~  166 (334)
T PLN00023        162 DIAPK  166 (334)
T ss_pred             ccccc
Confidence            98653

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.58  E-value=4.9e-14  Score=103.36  Aligned_cols=115  Identities=20%  Similarity=0.171  Sum_probs=71.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcce-eeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS-TCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +|+++|..|+|||||++.+++......    ..+|. ......+.. ++  ..+.+|||+|..+.           ....
T Consensus         2 KVvvlG~~gvGKTSLi~r~~~~~f~~~----y~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~-----------~~~~   65 (247)
T cd04143           2 RMVVLGASKVGKTAIVSRFLGGRFEEQ----YTPTIEDFHRKLYSI-RGEVYQLDILDTSGNHPF-----------PAMR   65 (247)
T ss_pred             EEEEECcCCCCHHHHHHHHHcCCCCCC----CCCChhHhEEEEEEE-CCEEEEEEEEECCCChhh-----------hHHH
Confidence            689999999999999999987653321    11121 111122222 23  45789999997652           1122


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHh-------hhhcCcEEEEEeCcCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-------KKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~-------~~~~~~~~iv~tk~D~~~  152 (174)
                      ...+..+|++++|+|.++.-+... ..+++.+.+...       .....|++++.||+|+..
T Consensus        66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~  127 (247)
T cd04143          66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF  127 (247)
T ss_pred             HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence            224567899999999985433332 344455543211       112369999999999974

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04133 Rop_like Rop subfamily

Probab=99.58  E-value=3.3e-14  Score=99.21  Aligned_cols=115  Identities=17%  Similarity=0.083  Sum_probs=77.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+++++|..|+|||||+..+...........+.+...   ....... ....+.+|||+|..+           +.....
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~---~~~~~~~~~~v~l~i~Dt~G~~~-----------~~~~~~   67 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVSVDGNTVNLGLWDTAGQED-----------YNRLRP   67 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee---EEEEEECCEEEEEEEEECCCCcc-----------ccccch
Confidence            5799999999999999999997653222111111111   1122221 234679999999876           333334


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ..+.++|++++|+|.+++-+...  ..|+..+.... .  ..|+++|.||+|+.+
T Consensus        68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgnK~Dl~~  119 (176)
T cd04133          68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-P--NVPIVLVGTKLDLRD  119 (176)
T ss_pred             hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEeChhhcc
Confidence            46788999999999986655554  35777776543 2  369999999999864

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.58  E-value=5e-14  Score=112.97  Aligned_cols=120  Identities=15%  Similarity=0.216  Sum_probs=80.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc--cccccc------------------CCCCcceeeEEEEEEEeCCcEEEEEeC
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRR--AFKSRA------------------SSSGVTSTCEMQRTVLKDGQVVNVIDT   77 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~--~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~iDt   77 (174)
                      .+.++++++|+.++|||||.++|+...  ....+.                  ...+.+.......+.| ++..+.++||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDT   86 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDT   86 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEEC
Confidence            345899999999999999999986311  110110                  0113344445555666 7788999999


Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           78 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        78 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ||+.++.       .+..    .++..+|++++|+|+++++......+++.....     ..|+++++||+|+...+
T Consensus        87 PG~~df~-------~~~~----~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~-----~iPiiv~iNK~D~~~a~  147 (526)
T PRK00741         87 PGHEDFS-------EDTY----RTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR-----DTPIFTFINKLDRDGRE  147 (526)
T ss_pred             CCchhhH-------HHHH----HHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCcccccC
Confidence            9987621       1222    233456999999999877777666665544332     26899999999987654

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.58  E-value=6.6e-14  Score=97.58  Aligned_cols=115  Identities=17%  Similarity=0.044  Sum_probs=73.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+++++|..|+|||||+.+++.............   .......... ....+.++||||...           +.....
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~---~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~   67 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF---DNYSANVMVDGKPVNLGLWDTAGQED-----------YDRLRP   67 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce---eeeEEEEEECCEEEEEEEEECCCchh-----------hhhhhh
Confidence            5899999999999999999887553222111111   1111122221 124578999999765           233334


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      .++.++|++++|+|.+++-+...  ..|+..+.... .  ..|+++|.||.|+..
T Consensus        68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~--~~piilvgnK~Dl~~  119 (174)
T cd01871          68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-P--NTPIILVGTKLDLRD  119 (174)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEeeChhhcc
Confidence            46778999999999985433333  24555555532 2  369999999999854

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.58  E-value=1.3e-13  Score=94.11  Aligned_cols=130  Identities=17%  Similarity=0.224  Sum_probs=95.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc-----ccCCCC---cceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKS-----RASSSG---VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVG   91 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~   91 (174)
                      ..+|+++|+.++||||+++.+........     ..+...   .|....+....+..+..+++++|||+.+         
T Consensus        10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R---------   80 (187)
T COG2229          10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER---------   80 (187)
T ss_pred             ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHH---------
Confidence            46899999999999999999998764222     112222   4555566666664558899999999997         


Q ss_pred             HHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCCh-hhHHHHhcc
Q 030624           92 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND-ETLEDYLGR  164 (174)
Q Consensus        92 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~-~~~~~~~~~  164 (174)
                        +.-.+....+++..+++++|.+...+......++.+.....    .|++|++||.|+.+... +.+.++++.
T Consensus        81 --F~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a~ppe~i~e~l~~  148 (187)
T COG2229          81 --FKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDALPPEKIREALKL  148 (187)
T ss_pred             --HHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCCCCHHHHHHHHHh
Confidence              44444455677899999999987777766777777766432    58999999999987643 346677766

>cd04135 Tc10 TC10 subfamily

Probab=99.58  E-value=7.2e-14  Score=97.04  Aligned_cols=113  Identities=20%  Similarity=0.136  Sum_probs=71.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +|+++|++|+|||||++.+++.......    .+|.... ...... .+  ..+.+|||||..+..           ...
T Consensus         2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~   65 (174)
T cd04135           2 KCVVVGDGAVGKTCLLMSYANDAFPEEY----VPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYD-----------RLR   65 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCC----CCceeeeeEEEEEE-CCEEEEEEEEeCCCccccc-----------ccc
Confidence            7899999999999999999886642221    1121111 112222 22  346799999987632           122


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|++.+++-+...  ..++..+... ..  ..|++++.||+|+.+.
T Consensus        66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~--~~piivv~nK~Dl~~~  119 (174)
T cd04135          66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-AP--NVPYLLVGTQIDLRDD  119 (174)
T ss_pred             cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEeEchhhhcC
Confidence            235678899999999975433332  3455555543 22  3689999999998643

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>COG2262 HflX GTPases [General function prediction only]

Probab=99.57  E-value=7.4e-14  Score=106.15  Aligned_cols=129  Identities=26%  Similarity=0.237  Sum_probs=91.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .-+.|+++|-++||||||+|+|++...+..  .....|-+.......+..+..+.+-||-||.+  .-++.+..-+...+
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~--d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~--~LP~~LV~AFksTL  266 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVA--DQLFATLDPTTRRIELGDGRKVLLTDTVGFIR--DLPHPLVEAFKSTL  266 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeecc--ccccccccCceeEEEeCCCceEEEecCccCcc--cCChHHHHHHHHHH
Confidence            347899999999999999999998776433  33445555555566664578999999999997  44666666666665


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      . ....+|.++.|+|++++.-... ....+.|.+. +... .|+++|+||+|++.+.
T Consensus       267 E-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~~~-~p~i~v~NKiD~~~~~  320 (411)
T COG2262         267 E-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEI-GADE-IPIILVLNKIDLLEDE  320 (411)
T ss_pred             H-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CCCC-CCEEEEEecccccCch
Confidence            5 4578899999999986622222 2333334443 3222 6999999999998763

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.57  E-value=2.5e-14  Score=111.83  Aligned_cols=118  Identities=14%  Similarity=0.157  Sum_probs=81.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccc--------------cc-----------------cCCCCcceeeEEEEEEEeCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFK--------------SR-----------------ASSSGVTSTCEMQRTVLKDG   69 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~--------------~~-----------------~~~~~~t~~~~~~~~~~~~~   69 (174)
                      .+++++|+.++|||||++.|+.....-              .+                 +...+.|.........+ ++
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence            378999999999999999986432110              01                 11224556666666666 67


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcC
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  149 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D  149 (174)
                      ..+.++||||+.+           +.......+..+|++++|+|+.+++...+.+.+..+... +.   +++++++||+|
T Consensus        80 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~---~~iivviNK~D  144 (406)
T TIGR02034        80 RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GI---RHVVLAVNKMD  144 (406)
T ss_pred             eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CC---CcEEEEEEecc
Confidence            7899999999764           222223345678999999999878877777766655543 21   47899999999


Q ss_pred             CCCCC
Q 030624          150 ELEDN  154 (174)
Q Consensus       150 ~~~~~  154 (174)
                      +...+
T Consensus       145 ~~~~~  149 (406)
T TIGR02034       145 LVDYD  149 (406)
T ss_pred             cccch
Confidence            97543

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.57  E-value=4.4e-14  Score=114.37  Aligned_cols=115  Identities=18%  Similarity=0.239  Sum_probs=76.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-----------------CCcEEEEEeCCCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLFD   82 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~~iDtpG~~~   82 (174)
                      .+.|+++|+.++|||||+|+|++......  ...+.|.........+.                 +...+.++||||+..
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~--e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~   81 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKR--EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA   81 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccc--cCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence            46899999999999999999998754221  11112211111111100                 112488999999865


Q ss_pred             CCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                                 +.......+..+|++++|+|++++....+.+.+..+...   .  .|+++++||+|+..
T Consensus        82 -----------f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~---~--vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        82 -----------FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY---K--TPFVVAANKIDRIP  135 (590)
T ss_pred             -----------HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc---C--CCEEEEEECCCccc
Confidence                       222233355678999999999877777777776655442   2  58999999999864

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.57  E-value=3e-14  Score=102.82  Aligned_cols=115  Identities=19%  Similarity=0.248  Sum_probs=74.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccc-----------------------------ccccCCCCcceeeEEEEEEEeCCcEE
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAF-----------------------------KSRASSSGVTSTCEMQRTVLKDGQVV   72 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~~~~~   72 (174)
                      .|+++|+.++|||||+.+|+.....                             .......+.|.......+.+ ++..+
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i   79 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF   79 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence            3799999999999999998632110                             01112235566666666666 77899


Q ss_pred             EEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHHhhhhcCcEEEEE
Q 030624           73 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMIVVF  145 (174)
Q Consensus        73 ~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~~iv~  145 (174)
                      .++||||+.+           +...+......+|++++|+|+++.       ........+..... .+   .+|+++++
T Consensus        80 ~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~iiivv  144 (219)
T cd01883          80 TILDAPGHRD-----------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-LG---VKQLIVAV  144 (219)
T ss_pred             EEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-cC---CCeEEEEE
Confidence            9999999754           222222345667999999999853       22233343333322 11   15789999


Q ss_pred             eCcCCCC
Q 030624          146 TGGDELE  152 (174)
Q Consensus       146 tk~D~~~  152 (174)
                      ||+|+..
T Consensus       145 NK~Dl~~  151 (219)
T cd01883         145 NKMDDVT  151 (219)
T ss_pred             Ecccccc
Confidence            9999973

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=2e-14  Score=99.97  Aligned_cols=118  Identities=19%  Similarity=0.120  Sum_probs=87.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+++++|.+|+|||-|+...+.........++.+....+....+.- +.....+|||.|+.+           ++.+..+
T Consensus        15 FKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~-k~vkaqIWDTAGQER-----------yrAitSa   82 (222)
T KOG0087|consen   15 FKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDG-KTVKAQIWDTAGQER-----------YRAITSA   82 (222)
T ss_pred             EEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecC-cEEEEeeecccchhh-----------hccccch
Confidence            6799999999999999999988764333333333333333333322 334679999999997           6666677


Q ss_pred             ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      .++++.+.++|.|.+.+.+.+. ..|++.|++....  +.++++|.||+|+..
T Consensus        83 YYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~--nivimLvGNK~DL~~  133 (222)
T KOG0087|consen   83 YYRGAVGALLVYDITRRQTFENVERWLKELRDHADS--NIVIMLVGNKSDLNH  133 (222)
T ss_pred             hhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCC--CeEEEEeecchhhhh
Confidence            8999999999999986666665 7888888886533  468999999999976

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.57  E-value=3e-14  Score=99.09  Aligned_cols=113  Identities=19%  Similarity=0.076  Sum_probs=72.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcce-eeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS-TCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      +++++|+.|+|||||++++.+.......    ..|. .......... ....+.+|||||...           +.....
T Consensus         2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~   66 (173)
T cd04130           2 KCVLVGDGAVGKTSLIVSYTTNGYPTEY----VPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE-----------FDKLRP   66 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCCC----CCceeeeeeEEEEECCEEEEEEEEECCCChh-----------hccccc
Confidence            6899999999999999999875532211    1121 1111122221 124678999999865           222233


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      .++..+|++++|+|.+++-+...  ..|+..+.... .  ..|++++.||+|+..
T Consensus        67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~--~~piilv~nK~Dl~~  118 (173)
T cd04130          67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-P--KAPIILVGTQADLRT  118 (173)
T ss_pred             cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEeeChhhcc
Confidence            46678899999999985543333  34665555432 1  268999999999864

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.57  E-value=4.3e-14  Score=113.35  Aligned_cols=124  Identities=21%  Similarity=0.276  Sum_probs=91.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~--~~~~~~~~~~~~   97 (174)
                      ..+++++|.+|+|||||+|+|+|.... .| .-++.|.+.......+ +++.+.++|.||.++-..  ..+...+++.  
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~-Vg-NwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~DE~Var~~l--   77 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQK-VG-NWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSEDEKVARDFL--   77 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCce-ec-CCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCchHHHHHHHH--
Confidence            467999999999999999999998753 33 5677888877777777 777899999999997332  2233333332  


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhH
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL  158 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~  158 (174)
                         ...++|+++-|+|++ .++..-.-.++.+.-.      .|+++++|.+|..+..+..+
T Consensus        78 ---l~~~~D~ivnVvDAt-nLeRnLyltlQLlE~g------~p~ilaLNm~D~A~~~Gi~I  128 (653)
T COG0370          78 ---LEGKPDLIVNVVDAT-NLERNLYLTLQLLELG------IPMILALNMIDEAKKRGIRI  128 (653)
T ss_pred             ---hcCCCCEEEEEcccc-hHHHHHHHHHHHHHcC------CCeEEEeccHhhHHhcCCcc
Confidence               257789999999999 6655555555433332      58999999999987654443

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.57  E-value=7.4e-14  Score=97.07  Aligned_cols=115  Identities=18%  Similarity=0.098  Sum_probs=72.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|++|+|||||++.+++.......    .+|.... ...+... ....+.++||||..+           +....
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~   66 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVY----VPTVFENYVADIEVDGKQVELALWDTAGQED-----------YDRLR   66 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCccccceEEEEEECCEEEEEEEEeCCCchh-----------hhhcc
Confidence            57999999999999999999986532211    1111111 1122231 123578999999765           22222


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+.++|++++|++.++.-+...  ..++..+....   ...|++++.||+|+...
T Consensus        67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  120 (175)
T cd01870          67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRND  120 (175)
T ss_pred             ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhcccC
Confidence            335678899999999884422222  23555454432   12699999999998653

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.56  E-value=3.9e-14  Score=112.55  Aligned_cols=121  Identities=13%  Similarity=0.157  Sum_probs=81.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccc--------------ccc-----------------CCCCcceeeEEEEEEE
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRA-----------------SSSGVTSTCEMQRTVL   66 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~--------------~~~-----------------~~~~~t~~~~~~~~~~   66 (174)
                      ....+++++|+.++|||||++.|+.....-              .|.                 ...+.|.........+
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            445899999999999999999987543110              010                 1124455555555555


Q ss_pred             eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEe
Q 030624           67 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT  146 (174)
Q Consensus        67 ~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~t  146 (174)
                       ++..+.++||||+.+           +.+........+|++++|+|+.+++...+.+.+..+... +.   +++++++|
T Consensus       105 -~~~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~---~~iIvvvN  168 (474)
T PRK05124        105 -EKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GI---KHLVVAVN  168 (474)
T ss_pred             -CCcEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CC---CceEEEEE
Confidence             567899999999653           222222334778999999999877776666655444433 31   47899999


Q ss_pred             CcCCCCCC
Q 030624          147 GGDELEDN  154 (174)
Q Consensus       147 k~D~~~~~  154 (174)
                      |+|+.+.+
T Consensus       169 KiD~~~~~  176 (474)
T PRK05124        169 KMDLVDYS  176 (474)
T ss_pred             eeccccch
Confidence            99998543

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.56  E-value=1.2e-13  Score=99.92  Aligned_cols=116  Identities=19%  Similarity=0.117  Sum_probs=75.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccC-------------CCCcceeeE------------------------EEEE
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRAS-------------SSGVTSTCE------------------------MQRT   64 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~-------------~~~~t~~~~------------------------~~~~   64 (174)
                      +++++|+.++|||||++.++.... ..+..             ..+.|....                        ....
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   79 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGEL-DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC   79 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCc-CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence            578999999999999999985322 11100             001111000                        0011


Q ss_pred             EEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEE
Q 030624           65 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV  144 (174)
Q Consensus        65 ~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv  144 (174)
                      .. .+..+.++||||..+       ..+.....+.  ...+|++++|+|+..++...+.+++..+....     .|++++
T Consensus        80 ~~-~~~~i~liDtpG~~~-------~~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~-----ip~ivv  144 (224)
T cd04165          80 EK-SSKLVTFIDLAGHER-------YLKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALALN-----IPVFVV  144 (224)
T ss_pred             ee-CCcEEEEEECCCcHH-------HHHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHHcC-----CCEEEE
Confidence            12 456789999999764       2222222211  13689999999998788888888888777653     589999


Q ss_pred             EeCcCCCCC
Q 030624          145 FTGGDELED  153 (174)
Q Consensus       145 ~tk~D~~~~  153 (174)
                      +||+|+...
T Consensus       145 vNK~D~~~~  153 (224)
T cd04165         145 VTKIDLAPA  153 (224)
T ss_pred             EECccccCH
Confidence            999998754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.56  E-value=2.6e-14  Score=98.16  Aligned_cols=117  Identities=20%  Similarity=0.212  Sum_probs=75.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      +|+++|+.|+|||||++.+.+...........+  ........... ....+.+||++|...           +......
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~l~i~D~~g~~~-----------~~~~~~~   67 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIG--IDSYSKEVSIDGKPVNLEIWDTSGQER-----------FDSLRDI   67 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSS--EEEEEEEEEETTEEEEEEEEEETTSGG-----------GHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHhhccccccccccc--ccccccccccccccccccccccccccc-----------ccccccc
Confidence            589999999999999999998763322211111  22222223331 223589999999764           2222234


Q ss_pred             ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...++|++++|+|.+++-+... ..|+..+.......  .|++++.||.|+...
T Consensus        68 ~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~--~~iivvg~K~D~~~~  119 (162)
T PF00071_consen   68 FYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPED--IPIIVVGNKSDLSDE  119 (162)
T ss_dssp             HHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTT--SEEEEEEETTTGGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccc--ccceeeecccccccc
Confidence            5677899999999984333322 56777777665422  589999999998763

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.56  E-value=4.8e-14  Score=97.53  Aligned_cols=115  Identities=19%  Similarity=0.218  Sum_probs=68.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCccee--------------------------------------------
Q 030624           23 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST--------------------------------------------   58 (174)
Q Consensus        23 i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~--------------------------------------------   58 (174)
                      |+++|..++|||||+|+|+|......+.........                                            
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE   80 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence            689999999999999999998754444221100000                                            


Q ss_pred             ---------eEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHH
Q 030624           59 ---------CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSL  129 (174)
Q Consensus        59 ---------~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l  129 (174)
                               .............+.++||||+.+......       ..+..++..+|++|+|++++..++..+...+...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~-------~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~  153 (168)
T PF00350_consen   81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT-------EITEEYLPKADVVIFVVDANQDLTESDMEFLKQM  153 (168)
T ss_dssp             TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS-------HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred             ccccccccceeEEeeccccccceEEEeCCccccchhhhH-------HHHHHhhccCCEEEEEeccCcccchHHHHHHHHH
Confidence                     000001111234589999999976332222       3333344778999999999865665554443322


Q ss_pred             HHHHhhhhcCcEEEEEeCc
Q 030624          130 QTLFGKKIFDYMIVVFTGG  148 (174)
Q Consensus       130 ~~~~~~~~~~~~~iv~tk~  148 (174)
                      ...   . ...+++|+||+
T Consensus       154 ~~~---~-~~~~i~V~nk~  168 (168)
T PF00350_consen  154 LDP---D-KSRTIFVLNKA  168 (168)
T ss_dssp             HTT---T-CSSEEEEEE-G
T ss_pred             hcC---C-CCeEEEEEcCC
Confidence            221   1 14688999985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.55  E-value=4e-14  Score=116.34  Aligned_cols=121  Identities=14%  Similarity=0.162  Sum_probs=81.7

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccc--------------ccc-----------------CCCCcceeeEEEEE
Q 030624           16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRA-----------------SSSGVTSTCEMQRT   64 (174)
Q Consensus        16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~--------------~~~-----------------~~~~~t~~~~~~~~   64 (174)
                      +..+..+++++|+.++|||||++.|+.....-              .|.                 ...+.|........
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            33445889999999999999999998643210              110                 01234444444555


Q ss_pred             EEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEE
Q 030624           65 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV  144 (174)
Q Consensus        65 ~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv  144 (174)
                      .+ ++..+.++||||+.+       ....+.    .....+|++++|+|+.++....+.+.+..+... +.   ++++++
T Consensus       100 ~~-~~~~~~liDtPG~~~-------f~~~~~----~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~---~~iivv  163 (632)
T PRK05506        100 AT-PKRKFIVADTPGHEQ-------YTRNMV----TGASTADLAIILVDARKGVLTQTRRHSFIASLL-GI---RHVVLA  163 (632)
T ss_pred             cc-CCceEEEEECCChHH-------HHHHHH----HHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CC---CeEEEE
Confidence            55 667899999999653       222222    345677999999999877777766666555443 21   478899


Q ss_pred             EeCcCCCC
Q 030624          145 FTGGDELE  152 (174)
Q Consensus       145 ~tk~D~~~  152 (174)
                      +||+|+..
T Consensus       164 vNK~D~~~  171 (632)
T PRK05506        164 VNKMDLVD  171 (632)
T ss_pred             EEeccccc
Confidence            99999975

>PRK09866 hypothetical protein; Provisional

Probab=99.55  E-value=3.4e-13  Score=108.25  Aligned_cols=85  Identities=18%  Similarity=0.243  Sum_probs=58.9

Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcC
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  149 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D  149 (174)
                      ..+.++||||+....  ...+.+.+.+    .+..+|+|+||+|+....+..+...++.+++. ++.  .|+++|+||+|
T Consensus       230 ~QIIFVDTPGIhk~~--~~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K~--~PVILVVNKID  300 (741)
T PRK09866        230 GQLTLLDTPGPNEAG--QPHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQS--VPLYVLVNKFD  300 (741)
T ss_pred             CCEEEEECCCCCCcc--chHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CCC--CCEEEEEEccc
Confidence            457999999998632  1223334444    35667999999999866888888888777764 211  38999999999


Q ss_pred             CCCCC---hhhHHHHhc
Q 030624          150 ELEDN---DETLEDYLG  163 (174)
Q Consensus       150 ~~~~~---~~~~~~~~~  163 (174)
                      ..+..   .+.+.++++
T Consensus       301 l~dreeddkE~Lle~V~  317 (741)
T PRK09866        301 QQDRNSDDADQVRALIS  317 (741)
T ss_pred             CCCcccchHHHHHHHHH
Confidence            97532   134555554

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.54  E-value=6.3e-14  Score=99.70  Aligned_cols=109  Identities=17%  Similarity=0.054  Sum_probs=72.8

Q ss_pred             EcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE--EEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 030624           26 VGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK  102 (174)
Q Consensus        26 ~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~  102 (174)
                      +|..|+|||||++.++..... ..   ...|....+.  .+.+. ....+.+|||||...           +......++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~-~~---~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~-----------~~~l~~~~~   65 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFE-KK---YVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK-----------FGGLRDGYY   65 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCC-CC---CCCceeEEEEEEEEEECCEEEEEEEEECCCchh-----------hhhhhHHHh
Confidence            599999999999999865432 11   1223322222  22221 235789999999876           344444567


Q ss_pred             CCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          103 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       103 ~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ..+|++++|+|.+++.+... ..|++.+.+.. .  ..|+++|.||+|+..
T Consensus        66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~--~~piilvgNK~Dl~~  113 (200)
T smart00176       66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-E--NIPIVLCGNKVDVKD  113 (200)
T ss_pred             cCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccccc
Confidence            88899999999986544443 45666666643 2  259999999999854

Ran is involved in the active transport of proteins through nuclear pores.

>PRK13351 elongation factor G; Reviewed

Probab=99.54  E-value=8.1e-14  Score=115.63  Aligned_cols=119  Identities=18%  Similarity=0.229  Sum_probs=83.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccc--ccc--------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAF--KSR--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   82 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~--~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~   82 (174)
                      ..++|+++|+.|+|||||+++|+.....  ..+              ....+.|.........| ++..+.+|||||..+
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~d   85 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHID   85 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcHH
Confidence            4489999999999999999999753210  000              01134455555566667 778999999999875


Q ss_pred             CCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                                 +...+..++..+|++++|+|++++....+...++.+...   .  .|+++++||+|+...+
T Consensus        86 -----------f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~---~--~p~iiviNK~D~~~~~  141 (687)
T PRK13351         86 -----------FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY---G--IPRLIFINKMDRVGAD  141 (687)
T ss_pred             -----------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc---C--CCEEEEEECCCCCCCC
Confidence                       222333455666999999999877777766666554443   2  6899999999998753

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.54  E-value=9.3e-14  Score=93.24  Aligned_cols=113  Identities=21%  Similarity=0.206  Sum_probs=69.8

Q ss_pred             EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe---CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           25 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        25 i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      ++|++|+|||||+|++.+.......   ...|. .........   ....+.++|+||....           .......
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~---~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~~~   65 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEE---YETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERF-----------RSLRRLY   65 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcc---cccch-hheeeEEEEECCEEEEEEEEecCChHHH-----------HhHHHHH
Confidence            5799999999999999987652111   11222 222222221   2457899999998762           1222345


Q ss_pred             cCCceEEEEEEeCCCCCCHHHHHHH--HHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624          102 KDGIHAVLVVFSVRSRFSQEEEAAL--HSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~~~~~~~~l--~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ...+|++++|+|+++..........  ..+...  .....|+++++||+|+....
T Consensus        66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ivv~nk~D~~~~~  118 (157)
T cd00882          66 YRGADGIILVYDVTDRESFENVKEWLLLILINK--EGENIPIILVGNKIDLPEER  118 (157)
T ss_pred             hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhh--ccCCCcEEEEEecccccccc
Confidence            6778999999999854333332221  112221  22336999999999997653

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.54  E-value=5e-15  Score=102.68  Aligned_cols=120  Identities=15%  Similarity=0.245  Sum_probs=69.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE--eCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ...++++|++|||||+|+..|........- ++.    ..+. ....  .....+.++|+||..+-.       ..+.+.
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~-tS~----e~n~-~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~   69 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTV-TSM----ENNI-AYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDE   69 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B----S----SEEE-ECCGSSTCGTCECEEEETT-HCCC-------HHHHHH
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCee-ccc----cCCc-eEEeecCCCCEEEEEECCCcHHHH-------HHHHHh
Confidence            468999999999999999999876432111 111    1111 1111  135678999999998722       122222


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh----hcCcEEEEEeCcCCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK----IFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~----~~~~~~iv~tk~D~~~~~  154 (174)
                      .. ....+.+|+||+|.+ .....-++..+.|.+.+...    ...|++|+.||.|+....
T Consensus        70 ~~-~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   70 LK-YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             HH-HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred             hh-chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence            11 244579999999987 44344455555555554432    235899999999998753

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.54  E-value=1.3e-13  Score=111.98  Aligned_cols=115  Identities=18%  Similarity=0.207  Sum_probs=74.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE--EEEEe---------------CCcEEEEEeCCCCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK---------------DGQVVNVIDTPGLF   81 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~---------------~~~~~~~iDtpG~~   81 (174)
                      +.+.|+++|+.++|||||+++|.+.......  ..+.|......  ...+.               +-..+.++||||+.
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~--~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e   82 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKE--AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE   82 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCC--CCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence            4578999999999999999999886532211  11111111111  00000               00126899999987


Q ss_pred             CCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624           82 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                      ++           .......+..+|++++|+|+++++...+.+.+..+...     ..|+++++||+|+.
T Consensus        83 ~f-----------~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~-----~vpiIvviNK~D~~  136 (586)
T PRK04004         83 AF-----------TNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR-----KTPFVVAANKIDRI  136 (586)
T ss_pred             HH-----------HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc-----CCCEEEEEECcCCc
Confidence            62           22222345667999999999877878877777655442     25899999999985

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.53  E-value=1.1e-13  Score=109.29  Aligned_cols=116  Identities=19%  Similarity=0.229  Sum_probs=79.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc--c---------------------------ccccCCCCcceeeEEEEEEEeCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRA--F---------------------------KSRASSSGVTSTCEMQRTVLKDG   69 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~--~---------------------------~~~~~~~~~t~~~~~~~~~~~~~   69 (174)
                      +..+++++|+.++|||||+..|+....  .                           ...+...+.|.........+ ++
T Consensus         6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~~   84 (446)
T PTZ00141          6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK   84 (446)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-CC
Confidence            347899999999999999998864210  0                           00112235566665566666 67


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC-------CHHHHHHHHHHHHHHhhhhcCcEE
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-------SQEEEAALHSLQTLFGKKIFDYMI  142 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~~  142 (174)
                      ..+.++||||+.+           +.......+..+|++++|+|+.++.       ...+++.+..+... +.   ++++
T Consensus        85 ~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-gi---~~ii  149 (446)
T PTZ00141         85 YYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-GV---KQMI  149 (446)
T ss_pred             eEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-CC---CeEE
Confidence            7899999999775           4444444566789999999998664       35667776655543 22   3578


Q ss_pred             EEEeCcCC
Q 030624          143 VVFTGGDE  150 (174)
Q Consensus       143 iv~tk~D~  150 (174)
                      +++||+|.
T Consensus       150 v~vNKmD~  157 (446)
T PTZ00141        150 VCINKMDD  157 (446)
T ss_pred             EEEEcccc
Confidence            99999995

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.53  E-value=1.9e-13  Score=102.67  Aligned_cols=134  Identities=22%  Similarity=0.368  Sum_probs=90.7

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc----cCC--CCcceeeEEEEEEEeCC---cEEEEEeCCCCCCCCC
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR----ASS--SGVTSTCEMQRTVLKDG---QVVNVIDTPGLFDFSA   85 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~----~~~--~~~t~~~~~~~~~~~~~---~~~~~iDtpG~~~~~~   85 (174)
                      ...|-..+++++|++|.|||||+|+|++...-...    ...  ...+............+   ..+.++|||||.++..
T Consensus        18 ~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~id   97 (373)
T COG5019          18 SKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFID   97 (373)
T ss_pred             HhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccc
Confidence            44466689999999999999999999987432221    111  12333333333333222   3689999999998655


Q ss_pred             ChH-------HHHHHHHHHHH----------hccCCceEEEEEEeC-CCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624           86 GSE-------FVGKEIVKCIG----------MAKDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus        86 ~~~-------~~~~~~~~~~~----------~~~~~~~~il~v~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                      ...       .+..++..++.          ....++|++||.+.. ..++.+.+.+.|+.|.+..      ++|-|+.|
T Consensus        98 Ns~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~v------NlIPVI~K  171 (373)
T COG5019          98 NSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRV------NLIPVIAK  171 (373)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhccc------Ceeeeeec
Confidence            322       11222332221          124568999999976 4479999999999888875      89999999


Q ss_pred             cCCCCCC
Q 030624          148 GDELEDN  154 (174)
Q Consensus       148 ~D~~~~~  154 (174)
                      +|.+..+
T Consensus       172 aD~lT~~  178 (373)
T COG5019         172 ADTLTDD  178 (373)
T ss_pred             cccCCHH
Confidence            9999873

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=1.5e-13  Score=95.81  Aligned_cols=122  Identities=16%  Similarity=0.119  Sum_probs=89.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      .....+++++|.+|+|||+++-.+........-.  ...........+... ....+.+|||.|..+           ++
T Consensus         9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~--sTiGIDFk~kti~l~g~~i~lQiWDtaGQer-----------f~   75 (207)
T KOG0078|consen    9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFI--STIGIDFKIKTIELDGKKIKLQIWDTAGQER-----------FR   75 (207)
T ss_pred             cceEEEEEEECCCCCchhHhhhhhhhccCcCCcc--ceEEEEEEEEEEEeCCeEEEEEEEEcccchh-----------HH
Confidence            3344899999999999999999988776432222  222333334444441 123579999999998           77


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....++++|+++++|+|.++.-+.+. ..|++.+.+.....  .+.++|.||+|....
T Consensus        76 ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~--v~~~LvGNK~D~~~~  132 (207)
T KOG0078|consen   76 TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDD--VVKILVGNKCDLEEK  132 (207)
T ss_pred             HHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCC--CcEEEeecccccccc
Confidence            777788899999999999986555554 67999999976554  589999999999764

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.53  E-value=1.3e-13  Score=108.65  Aligned_cols=118  Identities=20%  Similarity=0.278  Sum_probs=77.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccc-c-------------c---------------ccCCCCcceeeEEEEEEEeCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAF-K-------------S---------------RASSSGVTSTCEMQRTVLKDG   69 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~-~-------------~---------------~~~~~~~t~~~~~~~~~~~~~   69 (174)
                      +..+++++|+.++|||||++.|+..... .             .               .....+.|.......+.+ .+
T Consensus         6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~~   84 (426)
T TIGR00483         6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-DK   84 (426)
T ss_pred             ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-CC
Confidence            3478999999999999999999742110 0             0               011235566666666665 56


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC---CCHHHHHHHHHHHHHHhhhhcCcEEEEEe
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR---FSQEEEAALHSLQTLFGKKIFDYMIVVFT  146 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~---~~~~~~~~l~~l~~~~~~~~~~~~~iv~t  146 (174)
                      ..+.++||||+.+           +.......+..+|++++|+|++++   ........+.... ..+   .+++++++|
T Consensus        85 ~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~-~~~---~~~iIVviN  149 (426)
T TIGR00483        85 YEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLAR-TLG---INQLIVAIN  149 (426)
T ss_pred             eEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHH-HcC---CCeEEEEEE
Confidence            7899999999654           333333345678999999999866   3333333333232 222   147899999


Q ss_pred             CcCCCC
Q 030624          147 GGDELE  152 (174)
Q Consensus       147 k~D~~~  152 (174)
                      |+|+..
T Consensus       150 K~Dl~~  155 (426)
T TIGR00483       150 KMDSVN  155 (426)
T ss_pred             ChhccC
Confidence            999975

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.53  E-value=2.3e-13  Score=97.91  Aligned_cols=117  Identities=20%  Similarity=0.097  Sum_probs=71.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE---eCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      ...+++++|++|||||||++.++........    ..|....+....+   .....+.++||+|....           .
T Consensus         8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~-----------~   72 (215)
T PTZ00132          8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKY----IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF-----------G   72 (215)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHhCCCCCCC----CCccceEEEEEEEEECCeEEEEEEEECCCchhh-----------h
Confidence            3478999999999999999654433221111    1222222222211   12346789999997542           2


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ......+..++++++|+|.+++.+... ..++..+.... .  ..|++++.||+|+...
T Consensus        73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~--~~~i~lv~nK~Dl~~~  128 (215)
T PTZ00132         73 GLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-E--NIPIVLVGNKVDVKDR  128 (215)
T ss_pred             hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccCccc
Confidence            222334567799999999985554443 45555555442 2  2588899999998543

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.53  E-value=2.3e-13  Score=110.76  Aligned_cols=118  Identities=20%  Similarity=0.253  Sum_probs=78.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccc------cccc-------CCCCcceeeEEEEEEEe--C--CcEEEEEeCCCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAF------KSRA-------SSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLFD   82 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~------~~~~-------~~~~~t~~~~~~~~~~~--~--~~~~~~iDtpG~~~   82 (174)
                      -++++++|+.++|||||+++|+.....      ....       ...+.|.........|.  +  ...+.+|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            378999999999999999999864210      0100       11245555444445442  1  25689999999986


Q ss_pred             CCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +           ...+..++..+|++++|+|++++....+...+..+.+   ..  .|+++++||+|+...
T Consensus        83 F-----------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~--ipiIiViNKiDl~~~  137 (595)
T TIGR01393        83 F-----------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---ND--LEIIPVINKIDLPSA  137 (595)
T ss_pred             H-----------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cC--CCEEEEEECcCCCcc
Confidence            2           2223334556799999999987777776554433332   12  589999999998654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=3.8e-13  Score=101.61  Aligned_cols=137  Identities=20%  Similarity=0.252  Sum_probs=91.8

Q ss_pred             ccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc-----ccCCCCcceeeEEEEEEEeC---CcEEEEEeCCCCCCC
Q 030624           12 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS-----RASSSGVTSTCEMQRTVLKD---GQVVNVIDTPGLFDF   83 (174)
Q Consensus        12 ~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~-----~~~~~~~t~~~~~~~~~~~~---~~~~~~iDtpG~~~~   83 (174)
                      ......|-...+.++|++|.|||||+|+|++......     .......|............   ..++.++|||||.++
T Consensus        13 r~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~   92 (366)
T KOG2655|consen   13 RKSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDA   92 (366)
T ss_pred             HHHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccc
Confidence            3445566668999999999999999999988743211     11111123333333333312   236899999999986


Q ss_pred             CCCh-------HHHHHHHHHHHHh---------ccCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHHhhhhcCcEEEEEe
Q 030624           84 SAGS-------EFVGKEIVKCIGM---------AKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFT  146 (174)
Q Consensus        84 ~~~~-------~~~~~~~~~~~~~---------~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~t  146 (174)
                      ....       +.+..++..++..         .-.++|++||.+..+ .++.+.+...++.+....      +++-|+.
T Consensus        93 vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~v------NiIPVI~  166 (366)
T KOG2655|consen   93 VDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKV------NLIPVIA  166 (366)
T ss_pred             ccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccc------cccceee
Confidence            5532       1223334433322         123789999999874 369999999999888875      8899999


Q ss_pred             CcCCCCCC
Q 030624          147 GGDELEDN  154 (174)
Q Consensus       147 k~D~~~~~  154 (174)
                      |+|.+.++
T Consensus       167 KaD~lT~~  174 (366)
T KOG2655|consen  167 KADTLTKD  174 (366)
T ss_pred             ccccCCHH
Confidence            99999873

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=2.7e-13  Score=92.64  Aligned_cols=120  Identities=15%  Similarity=0.133  Sum_probs=87.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ..++.++|..|+|||.|+...+.....+.-..+.+  .+.....+.. .++.++.+|||.|+..           ++...
T Consensus         6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiG--vefg~r~~~id~k~IKlqiwDtaGqe~-----------frsv~   72 (216)
T KOG0098|consen    6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIG--VEFGARMVTIDGKQIKLQIWDTAGQES-----------FRSVT   72 (216)
T ss_pred             eEEEEEECCCCccHHHHHHHHhccCccccccceee--eeeceeEEEEcCceEEEEEEecCCcHH-----------HHHHH
Confidence            37899999999999999999998774322222222  2222222222 1345789999999987           77888


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      +.+++.+.++|+|.|.+.+-+... ..||..+++...+.  .-++++.||+|+....
T Consensus        73 ~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~rR  127 (216)
T KOG0098|consen   73 RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEARR  127 (216)
T ss_pred             HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhccc
Confidence            889999999999999986655554 78888888875333  4688999999997543

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.52  E-value=5.5e-13  Score=89.27  Aligned_cols=114  Identities=15%  Similarity=0.212  Sum_probs=89.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      +.||+++|..||||||+++.+.+...     ....+|...+.....+ +...+.++|.-|...           ++++++
T Consensus        16 E~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq~~-----------lr~~W~   78 (185)
T KOG0073|consen   16 EVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGGQKT-----------LRSYWK   78 (185)
T ss_pred             eeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCCcch-----------hHHHHH
Confidence            58999999999999999999999762     3455677777888877 889999999999887           889999


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhh-hh-cCcEEEEEeCcCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK-KI-FDYMIVVFTGGDELE  152 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~-~~-~~~~~iv~tk~D~~~  152 (174)
                      .++...|++++|+|.+++.-.+  +....+++.+.. +. ..+++++.||.|+..
T Consensus        79 nYfestdglIwvvDssD~~r~~--e~~~~L~~lL~eerlaG~~~Lvlank~dl~~  131 (185)
T KOG0073|consen   79 NYFESTDGLIWVVDSSDRMRMQ--ECKQELTELLVEERLAGAPLLVLANKQDLPG  131 (185)
T ss_pred             HhhhccCeEEEEEECchHHHHH--HHHHHHHHHHhhhhhcCCceEEEEecCcCcc
Confidence            9999999999999987543333  233334444433 22 258999999999973

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=2.6e-13  Score=89.59  Aligned_cols=118  Identities=18%  Similarity=0.194  Sum_probs=87.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+|+++|..|+|||.|++.++....|++.....+...-  +..++.. .+..+.+|||.|..+           ++.+..
T Consensus         8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfm--iktvev~gekiklqiwdtagqer-----------frsitq   74 (213)
T KOG0095|consen    8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFM--IKTVEVNGEKIKLQIWDTAGQER-----------FRSITQ   74 (213)
T ss_pred             EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEE--EEEEEECCeEEEEEEeeccchHH-----------HHHHHH
Confidence            68999999999999999999987755443222222211  2222321 245689999999987           777777


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..++.+|+++++.|.+...+... .+|+..|.++...++  -.++|.||.|+.+.
T Consensus        75 syyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr  127 (213)
T KOG0095|consen   75 SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR  127 (213)
T ss_pred             HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh
Confidence            78888999999999986666655 899999999876553  56899999999765

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.50  E-value=3.2e-13  Score=105.79  Aligned_cols=124  Identities=15%  Similarity=0.236  Sum_probs=78.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-ccccCCCCcceeeEEEEEEEe-------------------------C
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMQRTVLK-------------------------D   68 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~-------------------------~   68 (174)
                      ....+..+++++|+.++|||||+.+|++.... ...+...+.|....+....+.                         .
T Consensus         4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (411)
T PRK04000          4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL   83 (411)
T ss_pred             ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence            34455689999999999999999999774211 011112334443332111110                         0


Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624           69 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus        69 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                      ...+.++||||..+           +...+......+|++++|+|++++. ...+...+..+... +   .+++++|+||
T Consensus        84 ~~~i~liDtPG~~~-----------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-~---i~~iiVVlNK  148 (411)
T PRK04000         84 LRRVSFVDAPGHET-----------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-G---IKNIVIVQNK  148 (411)
T ss_pred             ccEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-C---CCcEEEEEEe
Confidence            25789999999653           3333333445679999999998665 56666666555432 2   1468999999


Q ss_pred             cCCCCC
Q 030624          148 GDELED  153 (174)
Q Consensus       148 ~D~~~~  153 (174)
                      +|+...
T Consensus       149 ~Dl~~~  154 (411)
T PRK04000        149 IDLVSK  154 (411)
T ss_pred             eccccc
Confidence            999864

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.50  E-value=4.7e-13  Score=109.05  Aligned_cols=118  Identities=19%  Similarity=0.243  Sum_probs=77.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccc-cc---c---------cCCCCcceeeEEEEEEEe----CCcEEEEEeCCCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAF-KS---R---------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPGLFD   82 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~-~~---~---------~~~~~~t~~~~~~~~~~~----~~~~~~~iDtpG~~~   82 (174)
                      -+.++++|+.++|||||+.+|+..... ..   +         +...+.|.........|.    +...+.+|||||+.+
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            478999999999999999999753211 00   0         112244544444444442    145789999999987


Q ss_pred             CCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +           ...+..++..+|++++|+|++++....+...+..+..   ..  .|+++|+||+|+...
T Consensus        87 F-----------~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~--lpiIvViNKiDl~~a  141 (600)
T PRK05433         87 F-----------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---ND--LEIIPVLNKIDLPAA  141 (600)
T ss_pred             H-----------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CC--CCEEEEEECCCCCcc
Confidence            2           2222334456699999999987777766555443332   12  589999999998654

>cd04129 Rho2 Rho2 subfamily

Probab=99.49  E-value=3.6e-13  Score=94.85  Aligned_cols=113  Identities=19%  Similarity=0.161  Sum_probs=70.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+++++|++|+|||||++.+.........    ..|.... ...... .+  ..+.++||||......           .
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~-----------~   65 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEY----HPTVFENYVTDCRV-DGKPVQLALWDTAGQEEYER-----------L   65 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCcccceEEEEEEE-CCEEEEEEEEECCCChhccc-----------c
Confidence            58999999999999999999854432211    1121111 112222 22  3468999999765321           1


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ....+..+|+++++++.++.-+...  ..|++.+..... .  .|+++|.||+|+..
T Consensus        66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~--~piilvgnK~Dl~~  119 (187)
T cd04129          66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-N--VPVILVGLKKDLRQ  119 (187)
T ss_pred             chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhhh
Confidence            1123567899999999874332222  346666665432 2  69999999999854

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.49  E-value=2.9e-13  Score=90.40  Aligned_cols=118  Identities=17%  Similarity=0.129  Sum_probs=82.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+|+++|.+|+|||||+-.+.....-+......+.........+.- +...+.+|||+|..+           ++.....
T Consensus        12 ~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg-~~~KlaiWDTAGqEr-----------FRtLTpS   79 (209)
T KOG0080|consen   12 FKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDG-KRLKLAIWDTAGQER-----------FRTLTPS   79 (209)
T ss_pred             EEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcC-ceEEEEEEeccchHh-----------hhccCHh
Confidence            8899999999999999999887653222222223233333333322 456789999999998           6666677


Q ss_pred             ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                      +++++.++|+|.|.+.+-+... .-|++.+..+...+. .-.++|.||+|.-
T Consensus        80 yyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~d-iikmlVgNKiDke  130 (209)
T KOG0080|consen   80 YYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPD-IIKMLVGNKIDKE  130 (209)
T ss_pred             HhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCcc-HhHhhhcccccch
Confidence            8999999999999985443333 567777777754431 2346899999975

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.48  E-value=3.3e-13  Score=105.61  Aligned_cols=120  Identities=16%  Similarity=0.224  Sum_probs=75.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEE--------------E-----------eCCcEE
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTV--------------L-----------KDGQVV   72 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~--------------~-----------~~~~~~   72 (174)
                      +..+|+++|+.++|||||+++|++..... ......+.|....+....              .           .....+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            34789999999999999999998742111 001111222222211110              0           013578


Q ss_pred             EEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624           73 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus        73 ~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                      .++||||..+           +...+...+..+|++++|+|++++. ...+.+.+..+... +.   +++++++||+|+.
T Consensus        83 ~liDtPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-gi---~~iIVvvNK~Dl~  147 (406)
T TIGR03680        83 SFVDAPGHET-----------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-GI---KNIVIVQNKIDLV  147 (406)
T ss_pred             EEEECCCHHH-----------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-CC---CeEEEEEEccccC
Confidence            9999999764           2233333445679999999998665 55666666655332 21   4789999999997


Q ss_pred             CC
Q 030624          152 ED  153 (174)
Q Consensus       152 ~~  153 (174)
                      ..
T Consensus       148 ~~  149 (406)
T TIGR03680       148 SK  149 (406)
T ss_pred             CH
Confidence            64

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PTZ00416 elongation factor 2; Provisional

Probab=99.48  E-value=3.1e-13  Score=113.88  Aligned_cols=119  Identities=17%  Similarity=0.203  Sum_probs=82.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccc----cc----------cCCCCcceeeEEEEEEEe---------CCcEEE
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFK----SR----------ASSSGVTSTCEMQRTVLK---------DGQVVN   73 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~----~~----------~~~~~~t~~~~~~~~~~~---------~~~~~~   73 (174)
                      ..+.++|+++|+.++|||||+++|+......    .+          ....+.|.........|.         ++..+.
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            4455899999999999999999998632110    00          011133333333333442         145689


Q ss_pred             EEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624           74 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus        74 ~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                      ++||||+.+           +...+..+...+|++++|+|+.+++...+...++.+.+..     .|+++++||+|+.
T Consensus        96 liDtPG~~~-----------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~-----~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVD-----------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQER-----IRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHh-----------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcC-----CCEEEEEEChhhh
Confidence            999999986           3333444567779999999998889888887776665542     5899999999997

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.48  E-value=7.5e-13  Score=95.30  Aligned_cols=117  Identities=17%  Similarity=0.149  Sum_probs=82.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE-eC--CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+|+++|+.|+|||||++++.+........    .|.......... ..  ...+.+|||+|+.+           +...
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~-----------~~~~   70 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYP----PTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE-----------YRSL   70 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCC----CceeeeeEEEEEEeCCCEEEEEeecCCCHHH-----------HHHH
Confidence            799999999999999999999887543321    222222222211 11  34578999999987           6677


Q ss_pred             HHhccCCceEEEEEEeCCC--CCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      +...+.++++++++++...  +.......+...+.......  .+++++.||+|+....
T Consensus        71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~~  127 (219)
T COG1100          71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDD--VPILLVGNKIDLFDEQ  127 (219)
T ss_pred             HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCC--ceEEEEecccccccch
Confidence            7778899999999998873  33333466666666654322  5899999999998763

>cd01882 BMS1 Bms1

Probab=99.47  E-value=2.9e-12  Score=92.82  Aligned_cols=111  Identities=19%  Similarity=0.143  Sum_probs=73.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+...|+++|++|+|||||+|.|++....... .....+.    . .....+..+.++||||..          ..+.+.
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~-~~~~g~i----~-i~~~~~~~i~~vDtPg~~----------~~~l~~  100 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNI-SDIKGPI----T-VVTGKKRRLTFIECPNDI----------NAMIDI  100 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcc-ccccccE----E-EEecCCceEEEEeCCchH----------HHHHHH
Confidence            34478999999999999999999875321111 1111111    1 111256788999999742          223333


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCc-EEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~iv~tk~D~~~~  153 (174)
                      +    ..+|++++++|+...+...+..++..+....     .| +++++||+|+..+
T Consensus       101 a----k~aDvVllviDa~~~~~~~~~~i~~~l~~~g-----~p~vi~VvnK~D~~~~  148 (225)
T cd01882         101 A----KVADLVLLLIDASFGFEMETFEFLNILQVHG-----FPRVMGVLTHLDLFKK  148 (225)
T ss_pred             H----HhcCEEEEEEecCcCCCHHHHHHHHHHHHcC-----CCeEEEEEeccccCCc
Confidence            3    4459999999998778777777776665531     34 4569999999754

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.46  E-value=3e-13  Score=112.49  Aligned_cols=118  Identities=19%  Similarity=0.269  Sum_probs=77.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc--------------cccccCCCCcceeeEEEE----EEEeCCcEEEEEeCCC
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRA--------------FKSRASSSGVTSTCEMQR----TVLKDGQVVNVIDTPG   79 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~--------------~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~iDtpG   79 (174)
                      ...++|+++|+.++|||||++.|+....              +.......+.|.......    ..+ ++..+.++||||
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTPG   95 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTPG   95 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCCC
Confidence            3458999999999999999999864210              001001122333332222    333 467799999999


Q ss_pred             CCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           80 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      +.++.           .....++..+|++++|+|+.++....+...++.+.+.   .  .|.++++||+|...
T Consensus        96 ~~~f~-----------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~---~--~p~ivviNKiD~~~  152 (720)
T TIGR00490        96 HVDFG-----------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE---N--VKPVLFINKVDRLI  152 (720)
T ss_pred             ccccH-----------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc---C--CCEEEEEEChhccc
Confidence            98732           2223345666999999999877777776666554332   1  46789999999875

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.45  E-value=4e-13  Score=102.64  Aligned_cols=118  Identities=22%  Similarity=0.219  Sum_probs=68.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCc-ceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV-TSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ...|+|+|.+|+|||||||+|.|...-..+.-..+. .+......+..++..++.+||.||........+    ++.+..
T Consensus        35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~----~Yl~~~  110 (376)
T PF05049_consen   35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPE----EYLKEV  110 (376)
T ss_dssp             -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HH----HHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHH----HHHHHc
Confidence            378999999999999999999885432222222211 122233334444556899999999986543333    333332


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE  150 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~  150 (174)
                      .  ...+|.+|+ +..+ +++..+....+.+++..     +++.+|-||+|.
T Consensus       111 ~--~~~yD~fii-i~s~-rf~~ndv~La~~i~~~g-----K~fyfVRTKvD~  153 (376)
T PF05049_consen  111 K--FYRYDFFII-ISSE-RFTENDVQLAKEIQRMG-----KKFYFVRTKVDS  153 (376)
T ss_dssp             T--GGG-SEEEE-EESS-S--HHHHHHHHHHHHTT------EEEEEE--HHH
T ss_pred             c--ccccCEEEE-EeCC-CCchhhHHHHHHHHHcC-----CcEEEEEecccc
Confidence            2  456686665 5555 88888888888887763     689999999996

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.45  E-value=1.3e-12  Score=110.39  Aligned_cols=120  Identities=17%  Similarity=0.204  Sum_probs=82.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc--------------cCCCCcceeeEEEEEEEe--------------
Q 030624           16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK--------------   67 (174)
Q Consensus        16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~--------------   67 (174)
                      +..+-++|+++|+.++|||||+++|+........              ....+.|.........|.              
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            4455689999999999999999998754321000              011233444444444442              


Q ss_pred             -CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEe
Q 030624           68 -DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT  146 (174)
Q Consensus        68 -~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~t  146 (174)
                       ++..+.++||||+.+           +......++..+|++++|+|+.+++...++..++.+....     .|.++++|
T Consensus        95 ~~~~~inliDtPGh~d-----------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~-----~p~i~~iN  158 (843)
T PLN00116         95 GNEYLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER-----IRPVLTVN  158 (843)
T ss_pred             CCceEEEEECCCCHHH-----------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCC-----CCEEEEEE
Confidence             145678999999986           3333334456669999999998898888887766555432     58899999


Q ss_pred             CcCCC
Q 030624          147 GGDEL  151 (174)
Q Consensus       147 k~D~~  151 (174)
                      |+|..
T Consensus       159 K~D~~  163 (843)
T PLN00116        159 KMDRC  163 (843)
T ss_pred             CCccc
Confidence            99998

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.44  E-value=6.3e-13  Score=87.64  Aligned_cols=117  Identities=19%  Similarity=0.223  Sum_probs=84.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ...+|+|.+|+|||+|+-.+.... | .+.....+..+..+..+... ....+.+|||+|...           ++.+..
T Consensus         9 fkllIigDsgVGKssLl~rF~ddt-F-s~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqEr-----------Frtits   75 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDT-F-SGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQER-----------FRTITS   75 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcc-c-ccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHH-----------HHHHHH
Confidence            346789999999999998887764 3 32222223333334444431 123679999999886           777777


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+++.|++++|.|.++.-+... ..|++.+++.+..   -|-++|.||.|....
T Consensus        76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~R  127 (198)
T KOG0079|consen   76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPER  127 (198)
T ss_pred             HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccc
Confidence            88999999999999986555444 8999999987642   478999999998764

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.44  E-value=1.7e-12  Score=89.13  Aligned_cols=108  Identities=22%  Similarity=0.167  Sum_probs=69.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      +|+++|++|+|||||++.++....... ..+   +.......+.. ++  ..+.++||+|....                
T Consensus         2 ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~---~~~~~~~~i~~-~~~~~~l~i~D~~g~~~~----------------   60 (158)
T cd04103           2 KLGIVGNLQSGKSALVHRYLTGSYVQL-ESP---EGGRFKKEVLV-DGQSHLLLIRDEGGAPDA----------------   60 (158)
T ss_pred             EEEEECCCCCcHHHHHHHHHhCCCCCC-CCC---CccceEEEEEE-CCEEEEEEEEECCCCCch----------------
Confidence            689999999999999998765542211 111   11111122333 33  45789999998641                


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                      .+...+|++++|+|.+++-+... ..+++.+..... ....|+++|.||.|+.
T Consensus        61 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~  112 (158)
T cd04103          61 QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAIS  112 (158)
T ss_pred             hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhh
Confidence            12346799999999986655555 566666665422 1225899999999974

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.44  E-value=1.6e-12  Score=105.85  Aligned_cols=114  Identities=21%  Similarity=0.265  Sum_probs=72.9

Q ss_pred             cCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCce
Q 030624           27 GRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIH  106 (174)
Q Consensus        27 G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (174)
                      |.+|+|||||+|++++... ..+ ...+.|.........+ ++..+.++||||..+......  ...+.+.. .....+|
T Consensus         1 G~pNvGKSSL~N~Ltg~~~-~v~-n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~--~e~v~~~~-l~~~~aD   74 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ-TVG-NWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSL--EEEVARDY-LLNEKPD   74 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC-eec-CCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccch--HHHHHHHH-HhhcCCC
Confidence            8899999999999999763 232 3345555555555556 667899999999987443211  11122111 1235789


Q ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          107 AVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       107 ~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ++++|+|++ .++..    +....+....  ..|+++++||+|+.+.
T Consensus        75 vvI~VvDat-~ler~----l~l~~ql~~~--~~PiIIVlNK~Dl~~~  114 (591)
T TIGR00437        75 LVVNVVDAS-NLERN----LYLTLQLLEL--GIPMILALNLVDEAEK  114 (591)
T ss_pred             EEEEEecCC-cchhh----HHHHHHHHhc--CCCEEEEEehhHHHHh
Confidence            999999998 44322    2222222222  2699999999998654

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.44  E-value=9e-13  Score=97.50  Aligned_cols=96  Identities=19%  Similarity=0.267  Sum_probs=68.8

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHH
Q 030624           13 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK   92 (174)
Q Consensus        13 ~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~   92 (174)
                      |..+..-.-+++++|++++|||||+|.|++...-..  .....|..+.....+| ++-.+.++|+||+..+.......++
T Consensus        56 f~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva--~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~grG~  132 (365)
T COG1163          56 FAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVA--DYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGRGR  132 (365)
T ss_pred             ceEeccCCeEEEEEcCCCccHHHHHHHHhCCCcccc--ccCceecccccceEee-cCceEEEEcCcccccCcccCCCCcc
Confidence            444444447899999999999999999999763211  2233344333334445 8889999999999998777766666


Q ss_pred             HHHHHHHhccCCceEEEEEEeCC
Q 030624           93 EIVKCIGMAKDGIHAVLVVFSVR  115 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~il~v~~~~  115 (174)
                      ++...    .+.+|.+++|+|+.
T Consensus       133 ~vlsv----~R~ADlIiiVld~~  151 (365)
T COG1163         133 QVLSV----ARNADLIIIVLDVF  151 (365)
T ss_pred             eeeee----eccCCEEEEEEecC
Confidence            66654    44559999999986

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.44  E-value=4.3e-13  Score=104.06  Aligned_cols=129  Identities=18%  Similarity=0.155  Sum_probs=83.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      ++.+++|.+++|||||+|.++...+   .......|+..-+.+...++-..|.++||||+.+.......... +..+...
T Consensus       169 rTlllcG~PNVGKSSf~~~vtradv---evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IE-mqsITAL  244 (620)
T KOG1490|consen  169 RTLLVCGYPNVGKSSFNNKVTRADD---EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIE-MQIITAL  244 (620)
T ss_pred             CeEEEecCCCCCcHhhccccccccc---ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHH-HHHHHHH
Confidence            8999999999999999999987653   22334444444444333336778999999999984332222211 1111111


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      + ---.+|||++|+++.+...-.+.++.+.....--.++++++|+||+|.+++.
T Consensus       245 A-HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~e  297 (620)
T KOG1490|consen  245 A-HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPE  297 (620)
T ss_pred             H-HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCcc
Confidence            1 1124589999998777666555555554443222446999999999998764

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=5.3e-12  Score=99.05  Aligned_cols=118  Identities=15%  Similarity=0.208  Sum_probs=92.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +++.|.++|+...|||||+.+|.+......  ...++|....-..+..+++..++|.||||+-.           +...-
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~--E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaA-----------F~aMR  218 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAG--EAGGITQHIGAFTVTLPSGKSITFLDTPGHAA-----------FSAMR  218 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehh--hcCCccceeceEEEecCCCCEEEEecCCcHHH-----------HHHHH
Confidence            447899999999999999999999876433  34667777777777777889999999999886           33332


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      .+-+.-.|.+++|+.+++++-+++.+.++-.+...     -|+++.+||+|+...+
T Consensus       219 aRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~-----VpiVvAinKiDkp~a~  269 (683)
T KOG1145|consen  219 ARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSAN-----VPIVVAINKIDKPGAN  269 (683)
T ss_pred             hccCccccEEEEEEEccCCccHhHHHHHHHHHhcC-----CCEEEEEeccCCCCCC
Confidence            33456679999999999898888877776555543     5999999999998764

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.40  E-value=1.7e-11  Score=87.38  Aligned_cols=132  Identities=21%  Similarity=0.260  Sum_probs=86.9

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC-----CCCcceeeEEEEEEEeCC---cEEEEEeCCCCCCCCCCh
Q 030624           16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-----SSGVTSTCEMQRTVLKDG---QVVNVIDTPGLFDFSAGS   87 (174)
Q Consensus        16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~-----~~~~t~~~~~~~~~~~~~---~~~~~iDtpG~~~~~~~~   87 (174)
                      ..|-...|.++|.+|.||||++|.|.....-..+..     ....|.+..........+   .++.++|||||.+.-...
T Consensus        42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~  121 (336)
T KOG1547|consen   42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINND  121 (336)
T ss_pred             hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCcc
Confidence            445568899999999999999999887554332211     223344444333333222   368999999999865432


Q ss_pred             ---HHHHHHHH----HHHHh----------ccCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcC
Q 030624           88 ---EFVGKEIV----KCIGM----------AKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  149 (174)
Q Consensus        88 ---~~~~~~~~----~~~~~----------~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D  149 (174)
                         +-+.+-+.    ++++.          -..++|+++|.+.++ ..+.+.+.++++.|.+..      +++-|+.|+|
T Consensus       122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIakaD  195 (336)
T KOG1547|consen  122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKAD  195 (336)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeecc
Confidence               22222222    22211          123579999999874 468888999999888875      8899999999


Q ss_pred             CCCC
Q 030624          150 ELED  153 (174)
Q Consensus       150 ~~~~  153 (174)
                      .+.-
T Consensus       196 tlTl  199 (336)
T KOG1547|consen  196 TLTL  199 (336)
T ss_pred             cccH
Confidence            9864

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.40  E-value=3.2e-12  Score=100.98  Aligned_cols=117  Identities=19%  Similarity=0.230  Sum_probs=79.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc--c---------------------------ccccCCCCcceeeEEEEEEEeCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRA--F---------------------------KSRASSSGVTSTCEMQRTVLKDG   69 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~--~---------------------------~~~~~~~~~t~~~~~~~~~~~~~   69 (174)
                      +...++++|+.++|||||+-.|+-...  .                           ...+...+.|.......+.+ ++
T Consensus         6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~~   84 (447)
T PLN00043          6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-TK   84 (447)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-CC
Confidence            347899999999999999987763110  0                           01112235666666666666 67


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC-CC------HHHHHHHHHHHHHHhhhhcCcEE
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FS------QEEEAALHSLQTLFGKKIFDYMI  142 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~------~~~~~~l~~l~~~~~~~~~~~~~  142 (174)
                      +.+.++||||+.+           +.......+..+|++++|+|+.++ +.      ...++.+..+... +.   ++++
T Consensus        85 ~~i~liDtPGh~d-----------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~-gi---~~iI  149 (447)
T PLN00043         85 YYCTVIDAPGHRD-----------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTL-GV---KQMI  149 (447)
T ss_pred             EEEEEEECCCHHH-----------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHc-CC---CcEE
Confidence            7899999999876           555555566788999999999854 32      3455555444332 21   3678


Q ss_pred             EEEeCcCCC
Q 030624          143 VVFTGGDEL  151 (174)
Q Consensus       143 iv~tk~D~~  151 (174)
                      +++||+|+.
T Consensus       150 V~vNKmD~~  158 (447)
T PLN00043        150 CCCNKMDAT  158 (447)
T ss_pred             EEEEcccCC
Confidence            899999976

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.40  E-value=3.9e-12  Score=83.86  Aligned_cols=119  Identities=12%  Similarity=0.075  Sum_probs=82.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+++++|.+.+|||||+...++......-.++.+...... ..+...+...+.+|||.|...           ++.....
T Consensus        22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvK-Tvyr~~kRiklQiwDTagqEr-----------yrtiTTa   89 (193)
T KOG0093|consen   22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVK-TVYRSDKRIKLQIWDTAGQER-----------YRTITTA   89 (193)
T ss_pred             eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEe-EeeecccEEEEEEEecccchh-----------hhHHHHH
Confidence            6899999999999999999888653322223333222222 111111234679999999986           6677777


Q ss_pred             ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+++++++|+++|.++.-+... +.|...|..+.-.  +.+++++.||||+-.+
T Consensus        90 yyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~--naqvilvgnKCDmd~e  141 (193)
T KOG0093|consen   90 YYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWD--NAQVILVGNKCDMDSE  141 (193)
T ss_pred             HhhccceEEEEEecCCHHHHHHHHHHHHHheeeecc--CceEEEEecccCCccc
Confidence            8999999999999985433333 6777777776433  3799999999998654

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=6.7e-12  Score=95.67  Aligned_cols=130  Identities=20%  Similarity=0.247  Sum_probs=90.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc---cc------c-----cc---------------cCCCCcceeeEEEEEEEeCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRR---AF------K-----SR---------------ASSSGVTSTCEMQRTVLKDG   69 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~---~~------~-----~~---------------~~~~~~t~~~~~~~~~~~~~   69 (174)
                      +...++++|+..+|||||+-.|+=..   ..      .     .+               ....+.|.......++. +.
T Consensus         6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~k   84 (428)
T COG5256           6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-DK   84 (428)
T ss_pred             CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-CC
Confidence            45889999999999999986654211   00      0     00               11226666666666666 56


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHHhhhhcCcEE
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMI  142 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~~  142 (174)
                      ..+.++|+||.-+           +..-.-..+.++|+.++|+++...       ...++++.+- |...+|.   ...+
T Consensus        85 ~~~tIiDaPGHrd-----------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~-La~tlGi---~~lI  149 (428)
T COG5256          85 YNFTIIDAPGHRD-----------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAF-LARTLGI---KQLI  149 (428)
T ss_pred             ceEEEeeCCchHH-----------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHH-HHHhcCC---ceEE
Confidence            7899999999665           444444567788999999999766       6666777764 4444453   4899


Q ss_pred             EEEeCcCCCCCChhhHHHHhcc
Q 030624          143 VVFTGGDELEDNDETLEDYLGR  164 (174)
Q Consensus       143 iv~tk~D~~~~~~~~~~~~~~~  164 (174)
                      +++||+|...-++.++++...+
T Consensus       150 VavNKMD~v~wde~rf~ei~~~  171 (428)
T COG5256         150 VAVNKMDLVSWDEERFEEIVSE  171 (428)
T ss_pred             EEEEcccccccCHHHHHHHHHH
Confidence            9999999997665666665544

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=9.6e-12  Score=97.53  Aligned_cols=121  Identities=17%  Similarity=0.187  Sum_probs=92.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe--CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      +++.|+++|+--.|||||+..|.+......  ...+.|.....+.+...  +...+.|+||||+..+           ..
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~--EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAF-----------t~   70 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAF-----------TA   70 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccc--cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHH-----------HH
Confidence            457999999999999999999999876433  34667777666777664  3368999999998863           21


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhh
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET  157 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~  157 (174)
                      .-..-+.=.|.+++|+++++++.+++.+.++-++...     -|+++++||+|+.+.+...
T Consensus        71 mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~-----vP~iVAiNKiDk~~~np~~  126 (509)
T COG0532          71 MRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAG-----VPIVVAINKIDKPEANPDK  126 (509)
T ss_pred             HHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCC-----CCEEEEEecccCCCCCHHH
Confidence            1122334469999999999999999988887777653     6999999999999775333

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.39  E-value=7e-12  Score=90.60  Aligned_cols=125  Identities=15%  Similarity=0.156  Sum_probs=74.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      +|+++|+.||||||..+.+.....+..- ...+.|.......+.......+.+||.||........      +.......
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT-~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~------~~~~~~~i   73 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDT-LRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY------FNSQREEI   73 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGG-GG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT------HTCCHHHH
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhc-cccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc------ccccHHHH
Confidence            6899999999999999999988765433 2345566666555554355689999999998743220      00111123


Q ss_pred             cCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          102 KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       102 ~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+++++|||+|+. +.+...-....+.+...........+.+++.|+|+..+
T Consensus        74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~  126 (232)
T PF04670_consen   74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE  126 (232)
T ss_dssp             HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred             HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence            46779999999997 34333334444444444333334688999999999764

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=2.8e-12  Score=96.49  Aligned_cols=127  Identities=17%  Similarity=0.285  Sum_probs=89.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEE-----------------------------------
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV-----------------------------------   65 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------------------------------   65 (174)
                      +-|+++|+.+.||||+|+.|+....+ +-...+.+|+........                                   
T Consensus        59 Pmill~GqyStGKTtfi~yLle~dyp-g~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~  137 (532)
T KOG1954|consen   59 PMILLVGQYSTGKTTFIRYLLEQDYP-GLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM  137 (532)
T ss_pred             ceEEEEeccccchhHHHHHHHhCCCC-ccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence            56899999999999999999998865 322333334333322220                                   


Q ss_pred             ---EeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhc
Q 030624           66 ---LKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIF  138 (174)
Q Consensus        66 ---~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~  138 (174)
                         ..+  -..+.++||||+.++..+.-.....+...+.+++.++|.|++++|+. .++..+  .+.+   ..+.|.+  
T Consensus       138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~h-KLDIsdEf~~vi---~aLkG~E--  211 (532)
T KOG1954|consen  138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAH-KLDISDEFKRVI---DALKGHE--  211 (532)
T ss_pred             HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechh-hccccHHHHHHH---HHhhCCc--
Confidence               000  02489999999998655544556668888899999999999999997 655544  4554   4444555  


Q ss_pred             CcEEEEEeCcCCCCCC
Q 030624          139 DYMIVVFTGGDELEDN  154 (174)
Q Consensus       139 ~~~~iv~tk~D~~~~~  154 (174)
                      ..+.||+||+|..+.+
T Consensus       212 dkiRVVLNKADqVdtq  227 (532)
T KOG1954|consen  212 DKIRVVLNKADQVDTQ  227 (532)
T ss_pred             ceeEEEeccccccCHH
Confidence            4789999999999874

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.37  E-value=9.2e-12  Score=89.53  Aligned_cols=45  Identities=27%  Similarity=0.326  Sum_probs=40.4

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ...+.++++++...|  ..++++||+|||||||+|.++|...+..|.
T Consensus        15 ~~~vl~~i~L~v~~G--EfvsilGpSGcGKSTLLriiAGL~~p~~G~   59 (248)
T COG1116          15 GVEVLEDINLSVEKG--EFVAILGPSGCGKSTLLRLIAGLEKPTSGE   59 (248)
T ss_pred             ceEEeccceeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            346788999999999  999999999999999999999999887763

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.37  E-value=3.8e-12  Score=95.58  Aligned_cols=135  Identities=15%  Similarity=0.052  Sum_probs=83.0

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCc-ceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV-TSTCEMQRTVLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~iDtpG~~~~   83 (174)
                      ..+.++++++++.|  ..++++|+||||||||+++|+|...+..|...... .....  .... +.+..++.+.|.+.+.
T Consensus        18 ~~~l~~vs~~i~~G--ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--~~~~-~~~igy~~~~~~~~~~   92 (293)
T COG1131          18 KTALDGVSFEVEPG--EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--PAKV-RRRIGYVPQEPSLYPE   92 (293)
T ss_pred             CEEEeceeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--HHHH-HhheEEEccCCCCCcc
Confidence            56788999999999  99999999999999999999999876555321111 00000  0011 3456788898887765


Q ss_pred             CCChHHH-----------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHH
Q 030624           84 SAGSEFV-----------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE  122 (174)
Q Consensus        84 ~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~  122 (174)
                      .+..+.+                                         +++-...+.+...++++++ +..+++++++..
T Consensus        93 lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lli-LDEPt~GLDp~~  171 (293)
T COG1131          93 LTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLI-LDEPTSGLDPES  171 (293)
T ss_pred             ccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEE-ECCCCcCCCHHH
Confidence            5532211                                         1111222223345565444 344455888887


Q ss_pred             -HHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624          123 -EAALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus       123 -~~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                       .++.+.|++.....  ..++++.||
T Consensus       172 ~~~~~~~l~~l~~~g--~~tvlissH  195 (293)
T COG1131         172 RREIWELLRELAKEG--GVTILLSTH  195 (293)
T ss_pred             HHHHHHHHHHHHhCC--CcEEEEeCC
Confidence             45555566554322  247888888

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.37  E-value=6.7e-12  Score=87.77  Aligned_cols=137  Identities=18%  Similarity=0.146  Sum_probs=81.2

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE--EEEEeCCcEEEEEeCCCCCCC
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~iDtpG~~~~   83 (174)
                      .+.++++++.+.+  ..++++|+||+|||||++.|+|..++..|.............  ...+ .....++.+.|.+...
T Consensus        14 ~~l~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~i~~~~q~~~~~~~   90 (178)
T cd03229          14 TVLNDVSLNIEAG--EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPL-RRRIGMVFQDFALFPH   90 (178)
T ss_pred             EEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHH-hhcEEEEecCCccCCC
Confidence            4678889999998  999999999999999999999987765553221111000000  0011 2334566677776543


Q ss_pred             CCChHHH-------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHH-HHHHHHHhhhhcCcEEEEEeCc
Q 030624           84 SAGSEFV-------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGG  148 (174)
Q Consensus        84 ~~~~~~~-------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~~iv~tk~  148 (174)
                      .+..+..       .++....++....+++.+++ ..++..++...+..+ +.+.+.....  ..++++++|-
T Consensus        91 ~t~~~~l~~~lS~G~~qr~~la~al~~~p~llil-DEP~~~LD~~~~~~l~~~l~~~~~~~--~~tiii~sH~  160 (178)
T cd03229          91 LTVLENIALGLSGGQQQRVALARALAMDPDVLLL-DEPTSALDPITRREVRALLKSLQAQL--GITVVLVTHD  160 (178)
T ss_pred             CCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEE-eCCcccCCHHHHHHHHHHHHHHHHhc--CCEEEEEeCC
Confidence            3322222       34444555666777776655 334447877775444 4444443211  3678888884

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12740 elongation factor G; Reviewed

Probab=99.36  E-value=1e-11  Score=102.99  Aligned_cols=112  Identities=21%  Similarity=0.271  Sum_probs=76.1

Q ss_pred             EcCCCCCHHHHHHHHhCCccc--ccc--------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHH
Q 030624           26 VGRTGNGKSATGNSILGRRAF--KSR--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF   89 (174)
Q Consensus        26 ~G~~g~GKStlin~l~~~~~~--~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~   89 (174)
                      +|+.++|||||++.|+.....  ..+              ....+.|.........+ ++..+.+|||||..+       
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~-------   72 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVD-------   72 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHH-------
Confidence            599999999999999543211  000              01134555555566667 778899999999875       


Q ss_pred             HHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           90 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                          +...+..++..+|++++++|+++.....+...+..+...   .  .|+++++||+|.....
T Consensus        73 ----~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~---~--~p~iiv~NK~D~~~~~  128 (668)
T PRK12740         73 ----FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY---G--VPRIIFVNKMDRAGAD  128 (668)
T ss_pred             ----HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc---C--CCEEEEEECCCCCCCC
Confidence                222222344567999999999877766666665554432   2  5889999999998654

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.36  E-value=6.4e-12  Score=99.26  Aligned_cols=121  Identities=13%  Similarity=0.188  Sum_probs=77.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccc-ccCCCCcceeeEEEEE---------------EEe--------------
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRT---------------VLK--------------   67 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~---------------~~~--------------   67 (174)
                      .+..+|+++|+-.+|||||+++|++.....- .+...+.|....+...               .+.              
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            3458999999999999999999998653211 1111222222211111               000              


Q ss_pred             ---CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC-CCHHHHHHHHHHHHHHhhhhcCcEEE
Q 030624           68 ---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMIV  143 (174)
Q Consensus        68 ---~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~i  143 (174)
                         ..+.+.++||||..+           +.+.+...+..+|.+++|+++.++ ....+.+.+..+.. ++.   +++++
T Consensus       112 ~~~~~~~i~~IDtPGH~~-----------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~-lgi---~~iIV  176 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDI-----------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEI-MKL---KHIII  176 (460)
T ss_pred             cccccceEeeeeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHH-cCC---CcEEE
Confidence               024689999999754           344444445677999999999865 46666666654333 332   47899


Q ss_pred             EEeCcCCCCC
Q 030624          144 VFTGGDELED  153 (174)
Q Consensus       144 v~tk~D~~~~  153 (174)
                      ++||+|+.+.
T Consensus       177 vlNKiDlv~~  186 (460)
T PTZ00327        177 LQNKIDLVKE  186 (460)
T ss_pred             EEecccccCH
Confidence            9999999754

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.36  E-value=2.3e-12  Score=90.07  Aligned_cols=119  Identities=14%  Similarity=0.183  Sum_probs=74.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      ..++++|+++||||+|+-.|...... ..    -.....+.....+ ......++|.||..+       +...+.+..+-
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~-~T----vtSiepn~a~~r~-gs~~~~LVD~PGH~r-------lR~kl~e~~~~  105 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHR-GT----VTSIEPNEATYRL-GSENVTLVDLPGHSR-------LRRKLLEYLKH  105 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCcc-Ce----eeeeccceeeEee-cCcceEEEeCCCcHH-------HHHHHHHHccc
Confidence            68999999999999999777755321 11    1112222222323 455679999999987       22333333321


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhh----hhcCcEEEEEeCcCCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK----KIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~iv~tk~D~~~~~  154 (174)
                      . ..+-+++||+|.. -+...-+...+++.+.+-.    .-..|++|+.||.|+..+.
T Consensus       106 ~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAk  161 (238)
T KOG0090|consen  106 N-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAK  161 (238)
T ss_pred             c-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcC
Confidence            1 2678999999987 5555554444444443322    2236899999999998763

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.36  E-value=2.8e-12  Score=90.23  Aligned_cols=139  Identities=17%  Similarity=0.152  Sum_probs=87.0

Q ss_pred             CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCC
Q 030624            3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   82 (174)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~   82 (174)
                      |.-.+.++++++...+  ..++++||+|||||||+++|.+...++.|.................-+....+++....+++
T Consensus        13 g~~~VLkgi~l~v~~G--evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP   90 (240)
T COG1126          13 GDKEVLKGISLSVEKG--EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP   90 (240)
T ss_pred             CCeEEecCcceeEcCC--CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence            5567789999999999  99999999999999999999999888776433222110000000000122334555554444


Q ss_pred             CCCChHHH------------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCH
Q 030624           83 FSAGSEFV------------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQ  120 (174)
Q Consensus        83 ~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~  120 (174)
                      -.+..+..                                          .++-..++++.+-++++++|--. ++.+++
T Consensus        91 HlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEP-TSALDP  169 (240)
T COG1126          91 HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEP-TSALDP  169 (240)
T ss_pred             cchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCC-cccCCH
Confidence            22211111                                          23444556666778887776433 337778


Q ss_pred             HH-HHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624          121 EE-EAALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus       121 ~~-~~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                      +- .+.++.+.++..+.   -+++++||
T Consensus       170 Elv~EVL~vm~~LA~eG---mTMivVTH  194 (240)
T COG1126         170 ELVGEVLDVMKDLAEEG---MTMIIVTH  194 (240)
T ss_pred             HHHHHHHHHHHHHHHcC---CeEEEEec
Confidence            76 67777777775333   68999999

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=9.1e-12  Score=82.67  Aligned_cols=125  Identities=18%  Similarity=0.156  Sum_probs=84.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+++++|+.|+|||.|+..+.....-....-..+......+..+.- +..++.+|||.|...           ++...+.
T Consensus        10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg-K~vKLQIWDTAGQEr-----------FRSVtRs   77 (214)
T KOG0086|consen   10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG-KTVKLQIWDTAGQER-----------FRSVTRS   77 (214)
T ss_pred             heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC-cEEEEEEeecccHHH-----------HHHHHHH
Confidence            6789999999999999988776543211111122222222223222 445789999999987           7888888


Q ss_pred             ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHH
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE  159 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~  159 (174)
                      .++++.+.++|.|.+++-+... ..|+.-++......  ..++++.||.|+-...+.+..
T Consensus        78 YYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~R~Vtfl  135 (214)
T KOG0086|consen   78 YYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPEREVTFL  135 (214)
T ss_pred             HhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChhhhhhHH
Confidence            9999999999999985544443 56666666654333  467788999999766444443

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.35  E-value=1.4e-11  Score=94.57  Aligned_cols=130  Identities=15%  Similarity=0.180  Sum_probs=82.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccc--------------cCCCC---cceeeEE---EEEEEeCC----cEE
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSG---VTSTCEM---QRTVLKDG----QVV   72 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~--------------~~~~~---~t~~~~~---~~~~~~~~----~~~   72 (174)
                      .+-..-|+++|+.++|||||+|+++++...+.-              .+..+   .|++..+   ..++..-.    .++
T Consensus        14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V   93 (492)
T TIGR02836        14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV   93 (492)
T ss_pred             hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence            333478999999999999999999998211110              11223   4555555   33333223    678


Q ss_pred             EEEeCCCCCCCCCChHHHHHH--------------HHHH-----HHhccCCceEEEEEE-eCC------CCCCHHHHHHH
Q 030624           73 NVIDTPGLFDFSAGSEFVGKE--------------IVKC-----IGMAKDGIHAVLVVF-SVR------SRFSQEEEAAL  126 (174)
Q Consensus        73 ~~iDtpG~~~~~~~~~~~~~~--------------~~~~-----~~~~~~~~~~il~v~-~~~------~~~~~~~~~~l  126 (174)
                      .++||+|+.............              +-++     -+....+++..++|. |.+      +.+...+.+++
T Consensus        94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i  173 (492)
T TIGR02836        94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI  173 (492)
T ss_pred             EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence            999999998755433322211              0011     111223678888888 664      35566677887


Q ss_pred             HHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624          127 HSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus       127 ~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                      +.|++..     +|.++++|+.|-.
T Consensus       174 ~eLk~~~-----kPfiivlN~~dp~  193 (492)
T TIGR02836       174 EELKELN-----KPFIILLNSTHPY  193 (492)
T ss_pred             HHHHhcC-----CCEEEEEECcCCC
Confidence            7777764     7999999999943

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.35  E-value=5.2e-12  Score=105.41  Aligned_cols=120  Identities=19%  Similarity=0.274  Sum_probs=78.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccccc----c----------cCCCCcceeeEEEEEEE--e-CCcEEEEEeCCC
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS----R----------ASSSGVTSTCEMQRTVL--K-DGQVVNVIDTPG   79 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~----~----------~~~~~~t~~~~~~~~~~--~-~~~~~~~iDtpG   79 (174)
                      ..+-+.|+++|+.++|||||+.+|+.......    +          ....+.|.........|  . ++..+.++||||
T Consensus        17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG   96 (731)
T PRK07560         17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG   96 (731)
T ss_pred             hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence            34457899999999999999999874321100    0          00112333333333333  1 245689999999


Q ss_pred             CCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           80 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      +.++           ......++..+|++++|+|+.++....+...++.+.+.   .  .|.++++||+|...
T Consensus        97 ~~df-----------~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~---~--~~~iv~iNK~D~~~  153 (731)
T PRK07560         97 HVDF-----------GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE---R--VKPVLFINKVDRLI  153 (731)
T ss_pred             ccCh-----------HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc---C--CCeEEEEECchhhc
Confidence            9872           22333344566999999999878888887777654443   1  36789999999863

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.34  E-value=2.4e-11  Score=86.20  Aligned_cols=116  Identities=18%  Similarity=0.048  Sum_probs=71.0

Q ss_pred             eEEEEEcCCCCCHHHHHH-HHhCCcccccc-cCCCCcceee-E-EE-E--------EEE-eCCcEEEEEeCCCCCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGN-SILGRRAFKSR-ASSSGVTSTC-E-MQ-R--------TVL-KDGQVVNVIDTPGLFDFSAG   86 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin-~l~~~~~~~~~-~~~~~~t~~~-~-~~-~--------~~~-~~~~~~~~iDtpG~~~~~~~   86 (174)
                      .+|+++|..|+|||||+. .+.+....... .....+|... . .. .        ... .....+.+|||+|....   
T Consensus         3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~---   79 (195)
T cd01873           3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK---   79 (195)
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence            689999999999999995 55443211010 0111122210 0 00 0        011 02346899999998641   


Q ss_pred             hHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           87 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                             +   ....+.++|++++|+|.+++-+....  .|++.+.... .  ..|+++|.||+|+..
T Consensus        80 -------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~~  134 (195)
T cd01873          80 -------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-P--RVPVILVGCKLDLRY  134 (195)
T ss_pred             -------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhccc
Confidence                   1   12357899999999999865554442  4677666543 2  258999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.33  E-value=1.8e-11  Score=94.46  Aligned_cols=90  Identities=19%  Similarity=0.220  Sum_probs=63.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC----------------cEEEEEeCCCCCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFD   82 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~~iDtpG~~~   82 (174)
                      ...+|+++|.+++|||||+|+|++.... .+ ..+..|.........+.+.                ..+.++||||+..
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~-v~-n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQVP-AE-NFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCccc-cc-CCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            3478999999999999999999987642 22 2345555555555544221                2489999999997


Q ss_pred             CCCChHHHHHHHHHHHHhccCCceEEEEEEeC
Q 030624           83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSV  114 (174)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~  114 (174)
                      +......+...+...++    .+|++++|+|+
T Consensus        98 ga~~g~gLg~~fL~~Ir----~aD~il~VVd~  125 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIR----AVDGIYHVVRA  125 (390)
T ss_pred             CCcchhHHHHHHHHHHH----HCCEEEEEEeC
Confidence            65555555555665544    45999999997

>cd01900 YchF YchF subfamily

Probab=99.33  E-value=1.5e-11  Score=91.02  Aligned_cols=86  Identities=20%  Similarity=0.211  Sum_probs=60.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCc----------------EEEEEeCCCCCCCCCC
Q 030624           23 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ----------------VVNVIDTPGLFDFSAG   86 (174)
Q Consensus        23 i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~~iDtpG~~~~~~~   86 (174)
                      ++++|.+++|||||+|+|++.... .+ ..++.|.......+.+.+.+                .+.++|+||+.++...
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~-~~-n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAE-AA-NYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCc-cc-cccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            589999999999999999998752 22 23445545554444442221                4899999999986655


Q ss_pred             hHHHHHHHHHHHHhccCCceEEEEEEeC
Q 030624           87 SEFVGKEIVKCIGMAKDGIHAVLVVFSV  114 (174)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~il~v~~~  114 (174)
                      ...+..++...++    .+|+++.|+++
T Consensus        79 ~~glg~~fL~~i~----~~D~li~VV~~  102 (274)
T cd01900          79 GEGLGNKFLSHIR----EVDAIAHVVRC  102 (274)
T ss_pred             hhHHHHHHHHHHH----hCCEEEEEEeC
Confidence            5556666665544    55999999986

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.33  E-value=6.7e-12  Score=91.50  Aligned_cols=45  Identities=31%  Similarity=0.437  Sum_probs=40.3

Q ss_pred             CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ++..+.++++|+.+.|  ..++++||||||||||+++|+|..++..|
T Consensus        13 ~~~~il~~ls~~i~~G--~i~~iiGpNG~GKSTLLk~l~g~l~p~~G   57 (258)
T COG1120          13 GGKPILDDLSFSIPKG--EITGILGPNGSGKSTLLKCLAGLLKPKSG   57 (258)
T ss_pred             CCeeEEecceEEecCC--cEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence            4566789999999999  99999999999999999999998777666

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.33  E-value=6.8e-12  Score=85.68  Aligned_cols=121  Identities=15%  Similarity=0.078  Sum_probs=74.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|.++|.+|+|||||+|.........-...+.+.-...+-..+.. +...+.+|||.|..+           +.+.-.
T Consensus         9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~-~~vtlQiWDTAGQER-----------FqsLg~   76 (210)
T KOG0394|consen    9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDD-RSVTLQIWDTAGQER-----------FQSLGV   76 (210)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcC-eEEEEEEEecccHHH-----------hhhccc
Confidence            47899999999999999999887654322211222222222222211 234578999999997           444445


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHH-HHHHHhhh-hcCcEEEEEeCcCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHS-LQTLFGKK-IFDYMIVVFTGGDELE  152 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~-l~~~~~~~-~~~~~~iv~tk~D~~~  152 (174)
                      .+++++|+.+++.|.+..-+.+. ..|-+. |.+....+ ..-|.+|+.||.|.-.
T Consensus        77 aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~  132 (210)
T KOG0394|consen   77 AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG  132 (210)
T ss_pred             ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence            68999999999998864322222 222222 23322121 2348999999999865

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=2.7e-11  Score=99.58  Aligned_cols=120  Identities=21%  Similarity=0.239  Sum_probs=90.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc--ccccc--------------CCCCcceeeEEEEEEEeC-CcEEEEEeCCCCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRA--FKSRA--------------SSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLF   81 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~--~~~~~--------------~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~   81 (174)
                      .-+.|+++|+..+|||||..+|+-...  ...|.              ...+.|.........| + +..+.+|||||+-
T Consensus         9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPGHV   87 (697)
T COG0480           9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPGHV   87 (697)
T ss_pred             cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCCcc
Confidence            448999999999999999988763221  11111              1237788888888888 6 4899999999999


Q ss_pred             CCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCCh
Q 030624           82 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND  155 (174)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~  155 (174)
                      ++.       .+..+.++.+    |+.++|+|+.++..+.++..++...+..     .|.++++||+|....+-
T Consensus        88 DFt-------~EV~rslrvl----DgavvVvdaveGV~~QTEtv~rqa~~~~-----vp~i~fiNKmDR~~a~~  145 (697)
T COG0480          88 DFT-------IEVERSLRVL----DGAVVVVDAVEGVEPQTETVWRQADKYG-----VPRILFVNKMDRLGADF  145 (697)
T ss_pred             ccH-------HHHHHHHHhh----cceEEEEECCCCeeecHHHHHHHHhhcC-----CCeEEEEECccccccCh
Confidence            942       3444555544    9999999998899999888876666653     58999999999987643

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.32  E-value=2e-11  Score=80.06  Aligned_cols=131  Identities=15%  Similarity=0.119  Sum_probs=91.8

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHH
Q 030624           13 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK   92 (174)
Q Consensus        13 ~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~   92 (174)
                      +.+++.+..+++++|--++|||||++.|.+..+..-     .+|...+...+.+...-.+.++|.-|.-.          
T Consensus        10 ~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hl-----tpT~GFn~k~v~~~g~f~LnvwDiGGqr~----------   74 (185)
T KOG0074|consen   10 CKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHL-----TPTNGFNTKKVEYDGTFHLNVWDIGGQRG----------   74 (185)
T ss_pred             hcCCCcceEEEEEEecCCCcchhHHHHHccCChhhc-----cccCCcceEEEeecCcEEEEEEecCCccc----------
Confidence            445667789999999999999999999999875322     23333444455553446789999999876          


Q ss_pred             HHHHHHHhccCCceEEEEEEeCCCC--CCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624           93 EIVKCIGMAKDGIHAVLVVFSVRSR--FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  163 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~il~v~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~  163 (174)
                       ++.++..++...|.+|||+|.++.  ++....+..+.+.+..-..  -|+.|.-||-|++..  ...++.-.
T Consensus        75 -IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~--vpvlIfankQdllta--a~~eeia~  142 (185)
T KOG0074|consen   75 -IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAE--VPVLIFANKQDLLTA--AKVEEIAL  142 (185)
T ss_pred             -cchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhc--cceeehhhhhHHHhh--cchHHHHH
Confidence             888999999999999999997542  2222244444444432222  488999999999876  34444433

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.31  E-value=4.3e-11  Score=83.35  Aligned_cols=135  Identities=17%  Similarity=0.103  Sum_probs=80.7

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      .+.++++++.+.+  ..++++|+||+|||||++.|+|...+..|........... ..... .....++.+.|.+....+
T Consensus        14 ~~l~~~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~-~~~i~~~~q~~~~~~~~t   89 (173)
T cd03230          14 TALDDISLTVEKG--EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK-EPEEV-KRRIGYLPEEPSLYENLT   89 (173)
T ss_pred             eeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccc-chHhh-hccEEEEecCCccccCCc
Confidence            4678889999998  9999999999999999999999876655532111110000 00011 233456666666654333


Q ss_pred             ChHHH-----HHHHHHHHHhccCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHHhhhhcCcEEEEEeCc
Q 030624           86 GSEFV-----GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGG  148 (174)
Q Consensus        86 ~~~~~-----~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~iv~tk~  148 (174)
                      ..+.+     .++....++..+.+++++++ ..++..++.... ...+.|.+.. .+  ..+++++||-
T Consensus        90 v~~~~~LS~G~~qrv~laral~~~p~illl-DEPt~~LD~~~~~~l~~~l~~~~-~~--g~tiii~th~  154 (173)
T cd03230          90 VRENLKLSGGMKQRLALAQALLHDPELLIL-DEPTSGLDPESRREFWELLRELK-KE--GKTILLSSHI  154 (173)
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHcCCCEEEE-eCCccCCCHHHHHHHHHHHHHHH-HC--CCEEEEECCC
Confidence            22221     23344555666777776554 444447888774 4444455442 22  3678888874

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.30  E-value=4.7e-11  Score=86.77  Aligned_cols=43  Identities=28%  Similarity=0.353  Sum_probs=38.6

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.+.+  ..++++||||+|||||+++++|..++..|.
T Consensus        18 ~vl~~i~l~v~~G--~~~~iiGPNGaGKSTLlK~iLGll~p~~G~   60 (254)
T COG1121          18 PVLEDISLSVEKG--EITALIGPNGAGKSTLLKAILGLLKPSSGE   60 (254)
T ss_pred             eeeeccEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCcCCcce
Confidence            4788999999999  999999999999999999999977666663

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.30  E-value=4e-11  Score=91.70  Aligned_cols=88  Identities=19%  Similarity=0.207  Sum_probs=60.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC----------------cEEEEEeCCCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFS   84 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~~iDtpG~~~~~   84 (174)
                      .+++++|.+++|||||+|+|++... ..+ ..+..|.........+.+.                ..+.++|+||+.++.
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~-nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGA-EAA-NYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC-eec-ccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            6899999999999999999999773 222 2244454444433333221                248999999999865


Q ss_pred             CChHHHHHHHHHHHHhccCCceEEEEEEeC
Q 030624           85 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSV  114 (174)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~  114 (174)
                      .....+..++...++    ++|++++|+|+
T Consensus        81 ~~g~glg~~fL~~i~----~aD~li~VVd~  106 (364)
T PRK09601         81 SKGEGLGNQFLANIR----EVDAIVHVVRC  106 (364)
T ss_pred             ChHHHHHHHHHHHHH----hCCEEEEEEeC
Confidence            544555555555544    55999999998

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.30  E-value=1.1e-11  Score=88.72  Aligned_cols=140  Identities=17%  Similarity=0.130  Sum_probs=84.3

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE---EEEEeCCcEEEEEeCCCCCC
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ---RTVLKDGQVVNVIDTPGLFD   82 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~iDtpG~~~   82 (174)
                      .+.++++++++.|  ..++|+||+|||||||+|.|.+...++.|.............   ...+++....+++....+.+
T Consensus        19 ~~L~~v~l~i~~G--e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~   96 (226)
T COG1136          19 EALKDVNLEIEAG--EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLP   96 (226)
T ss_pred             EecccceEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCC
Confidence            4678899999999  999999999999999999999988776654222111000000   00111233455555555554


Q ss_pred             CCCChHHH------------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCH
Q 030624           83 FSAGSEFV------------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQ  120 (174)
Q Consensus        83 ~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~  120 (174)
                      ..+..+.+                                          .++-..++++....+. +|+...++..++.
T Consensus        97 ~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~-iilADEPTgnLD~  175 (226)
T COG1136          97 DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPK-IILADEPTGNLDS  175 (226)
T ss_pred             CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCC-eEEeeCccccCCh
Confidence            43322221                                          1223334444455555 4445555557777


Q ss_pred             HH-HHHHHHHHHHHhhhhcCcEEEEEeCcCC
Q 030624          121 EE-EAALHSLQTLFGKKIFDYMIVVFTGGDE  150 (174)
Q Consensus       121 ~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~  150 (174)
                      .. ...++.+.+...+.  ..++|++||-..
T Consensus       176 ~t~~~V~~ll~~~~~~~--g~tii~VTHd~~  204 (226)
T COG1136         176 KTAKEVLELLRELNKER--GKTIIMVTHDPE  204 (226)
T ss_pred             HHHHHHHHHHHHHHHhc--CCEEEEEcCCHH
Confidence            76 67777777765443  468999999544

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.26  E-value=7.5e-12  Score=80.36  Aligned_cols=115  Identities=19%  Similarity=0.234  Sum_probs=74.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .|++++|+.|+|||||.++|.|....-           ...+.++| ++.  ..|||||-.=       ..+.+...+..
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~ly-----------kKTQAve~-~d~--~~IDTPGEy~-------~~~~~Y~aL~t   60 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTLY-----------KKTQAVEF-NDK--GDIDTPGEYF-------EHPRWYHALIT   60 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhhh-----------cccceeec-cCc--cccCCchhhh-------hhhHHHHHHHH
Confidence            689999999999999999999876321           12233444 222  3689999663       23445555556


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC-ChhhHHHHhcc
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLGR  164 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~-~~~~~~~~~~~  164 (174)
                      ....+|+++++-.+.++.+.-..-+    ...    ..+++|-|+||+|+..+ +....+.++..
T Consensus        61 t~~dadvi~~v~~and~~s~f~p~f----~~~----~~k~vIgvVTK~DLaed~dI~~~~~~L~e  117 (148)
T COG4917          61 TLQDADVIIYVHAANDPESRFPPGF----LDI----GVKKVIGVVTKADLAEDADISLVKRWLRE  117 (148)
T ss_pred             HhhccceeeeeecccCccccCCccc----ccc----cccceEEEEecccccchHhHHHHHHHHHH
Confidence            6778899999988765433222222    111    12469999999999943 32344666655

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.26  E-value=9.3e-11  Score=84.25  Aligned_cols=43  Identities=28%  Similarity=0.277  Sum_probs=38.2

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++|+.+.+  ..++++|+||+|||||++.|+|...+..|
T Consensus        13 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G   55 (213)
T cd03259          13 VRALDDLSLTVEPG--EFLALLGPSGCGKTTLLRLIAGLERPDSG   55 (213)
T ss_pred             eeeecceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            34778899999999  99999999999999999999998776665

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=8.4e-11  Score=80.50  Aligned_cols=119  Identities=14%  Similarity=0.082  Sum_probs=87.3

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      ...++.+|+++|--+|||||++..+-..+..+     ..+|...++-.+.+ ++..+.+||.-|...           ++
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vt-----tvPTiGfnVE~v~y-kn~~f~vWDvGGq~k-----------~R   75 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-----TVPTIGFNVETVEY-KNISFTVWDVGGQEK-----------LR   75 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCccc-----CCCccccceeEEEE-cceEEEEEecCCCcc-----------cc
Confidence            34456899999999999999998876554432     24666677777777 789999999999987           77


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh--hcCcEEEEEeCcCCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED  153 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~~~  153 (174)
                      ..++..+...+++|||+|.+++.-..+  .-+.+...+.+.  ...|+++..||.|....
T Consensus        76 ~lW~~Y~~~t~~lIfVvDS~Dr~Ri~e--ak~eL~~~l~~~~l~~~~llv~aNKqD~~~a  133 (181)
T KOG0070|consen   76 PLWKHYFQNTQGLIFVVDSSDRERIEE--AKEELHRMLAEPELRNAPLLVFANKQDLPGA  133 (181)
T ss_pred             cchhhhccCCcEEEEEEeCCcHHHHHH--HHHHHHHHHcCcccCCceEEEEechhhcccc
Confidence            777888899999999999875422222  222333333332  23689999999998765

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=3.1e-11  Score=95.38  Aligned_cols=129  Identities=19%  Similarity=0.221  Sum_probs=90.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc-ccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +.+++++||+|+||||||++|........ .....++|..    .   .+.+++++..+|.-.          ..+++.+
T Consensus        69 PfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvv----s---gK~RRiTflEcp~Dl----------~~miDva  131 (1077)
T COG5192          69 PFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVV----S---GKTRRITFLECPSDL----------HQMIDVA  131 (1077)
T ss_pred             CeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEe----e---cceeEEEEEeChHHH----------HHHHhHH
Confidence            37788999999999999999987532111 1111222221    1   167889999999322          3366666


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhcccCCCCccccC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKVCF  174 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~~~~~~l~~~~  174 (174)
                      +.+    |.+++++|+.-++..++.++++.++.- |.   +.++-|+||.|+...+ .+++...+...++.|-++|
T Consensus       132 KIa----DLVlLlIdgnfGfEMETmEFLnil~~H-Gm---PrvlgV~ThlDlfk~~-stLr~~KKrlkhRfWtEiy  198 (1077)
T COG5192         132 KIA----DLVLLLIDGNFGFEMETMEFLNILISH-GM---PRVLGVVTHLDLFKNP-STLRSIKKRLKHRFWTEIY  198 (1077)
T ss_pred             Hhh----heeEEEeccccCceehHHHHHHHHhhc-CC---CceEEEEeecccccCh-HHHHHHHHHHhhhHHHHHc
Confidence            655    999999999889999998888877764 33   4789999999998764 5666666665666665543

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.25  E-value=4.4e-11  Score=78.91  Aligned_cols=124  Identities=15%  Similarity=0.062  Sum_probs=82.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      ..+.++|-.+||||||+|.++..... .   ...+|...+...+.- ....+.++|.||...           ++..+..
T Consensus        21 mel~lvGLq~sGKtt~Vn~ia~g~~~-e---dmiptvGfnmrk~tk-gnvtiklwD~gGq~r-----------frsmWer   84 (186)
T KOG0075|consen   21 MELSLVGLQNSGKTTLVNVIARGQYL-E---DMIPTVGFNMRKVTK-GNVTIKLWDLGGQPR-----------FRSMWER   84 (186)
T ss_pred             eeEEEEeeccCCcceEEEEEeeccch-h---hhcccccceeEEecc-CceEEEEEecCCCcc-----------HHHHHHH
Confidence            68899999999999999998864421 1   123344444444432 456789999999998           6777777


Q ss_pred             ccCCceEEEEEEeCCCC--CCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhcc
Q 030624          101 AKDGIHAVLVVFSVRSR--FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  164 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~  164 (174)
                      +.++.++++|++|+.++  ++..-.+....+...  .-...|++++.||.|+..+-  .-.+.+.+
T Consensus        85 ycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~--~l~gip~LVLGnK~d~~~AL--~~~~li~r  146 (186)
T KOG0075|consen   85 YCRGVSAIVYVVDAADPDKLEASRSELHDLLDKP--SLTGIPLLVLGNKIDLPGAL--SKIALIER  146 (186)
T ss_pred             HhhcCcEEEEEeecCCcccchhhHHHHHHHhcch--hhcCCcEEEecccccCcccc--cHHHHHHH
Confidence            88899999999999742  222223333333321  11236999999999997662  33444433

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.25  E-value=3.1e-11  Score=81.02  Aligned_cols=123  Identities=16%  Similarity=0.062  Sum_probs=85.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE--EEEEe--CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      .|..++|.+-+|||+|+...+....+.-  +  .+|....+.  -++..  ....+.+|||+|..+           ++.
T Consensus         9 frlivigdstvgkssll~~ft~gkfael--s--dptvgvdffarlie~~pg~riklqlwdtagqer-----------frs   73 (213)
T KOG0091|consen    9 FRLIVIGDSTVGKSSLLRYFTEGKFAEL--S--DPTVGVDFFARLIELRPGYRIKLQLWDTAGQER-----------FRS   73 (213)
T ss_pred             EEEEEEcCCcccHHHHHHHHhcCccccc--C--CCccchHHHHHHHhcCCCcEEEEEEeeccchHH-----------HHH
Confidence            7899999999999999999987764321  1  222222211  11121  234678999999987           777


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhH
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL  158 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~  158 (174)
                      +.+..++..=++++|+|.+++-+.+. ..|++..+-..+.+.+.-..+|.+|.|+......+.
T Consensus        74 itksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~  136 (213)
T KOG0091|consen   74 ITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTA  136 (213)
T ss_pred             HHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccH
Confidence            88888888899999999987766666 677777776665343334568889999875443444

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=8.7e-11  Score=92.30  Aligned_cols=131  Identities=23%  Similarity=0.319  Sum_probs=92.2

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCccc---ccc----------cCCCCcceeeEEEEEEEeCC--cEEEEEeCCCC
Q 030624           16 PSNGERTVVLVGRTGNGKSATGNSILGRRAF---KSR----------ASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGL   80 (174)
Q Consensus        16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~---~~~----------~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~   80 (174)
                      |..+-+.++|+.+-..|||||...|+.....   ..+          +...++|......++.|..+  ..+.+|||||+
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH  135 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH  135 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence            3355688999999999999999998765431   111          12347788777777777331  57899999999


Q ss_pred             CCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHH
Q 030624           81 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLED  160 (174)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~  160 (174)
                      -++.       .+..+.+..+    +++|+++|+.++...++...+....+..     -.++.|+||+|+...+.+.++.
T Consensus       136 vDFs-------~EVsRslaac----~G~lLvVDA~qGvqAQT~anf~lAfe~~-----L~iIpVlNKIDlp~adpe~V~~  199 (650)
T KOG0462|consen  136 VDFS-------GEVSRSLAAC----DGALLVVDASQGVQAQTVANFYLAFEAG-----LAIIPVLNKIDLPSADPERVEN  199 (650)
T ss_pred             cccc-------ceehehhhhc----CceEEEEEcCcCchHHHHHHHHHHHHcC-----CeEEEeeeccCCCCCCHHHHHH
Confidence            9964       2233444444    9999999999888888866554433331     4789999999998876555544


Q ss_pred             Hh
Q 030624          161 YL  162 (174)
Q Consensus       161 ~~  162 (174)
                      -+
T Consensus       200 q~  201 (650)
T KOG0462|consen  200 QL  201 (650)
T ss_pred             HH
Confidence            33

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.25  E-value=6.8e-11  Score=90.56  Aligned_cols=43  Identities=28%  Similarity=0.373  Sum_probs=38.4

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++|+.+.|  ..++++|+||+|||||++.|+|...+..|
T Consensus        54 ~~~l~~is~~i~~G--ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G   96 (340)
T PRK13536         54 KAVVNGLSFTVASG--ECFGLLGPNGAGKSTIARMILGMTSPDAG   96 (340)
T ss_pred             EEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCce
Confidence            34678899999999  99999999999999999999998877665

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.24  E-value=6.3e-11  Score=81.71  Aligned_cols=127  Identities=12%  Similarity=0.086  Sum_probs=73.6

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      .+.++++++.+.+  ..++++|+||+|||||++.|+|..++..|.......................++.+   +..   
T Consensus        14 ~vl~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q---LS~---   85 (163)
T cd03216          14 KALDGVSLSVRRG--EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ---LSV---   85 (163)
T ss_pred             EEEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe---cCH---
Confidence            4678889999999  99999999999999999999998876555221111000000000000112333333   221   


Q ss_pred             ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHH-HHHHHHHHHhhhhcCcEEEEEeCc
Q 030624           86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGG  148 (174)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~iv~tk~  148 (174)
                          -.++....++....+++++++ ..+++.++...++ ..+.+.+.. ..  ..++++++|-
T Consensus        86 ----G~~qrl~laral~~~p~illl-DEP~~~LD~~~~~~l~~~l~~~~-~~--~~tiii~sh~  141 (163)
T cd03216          86 ----GERQMVEIARALARNARLLIL-DEPTAALTPAEVERLFKVIRRLR-AQ--GVAVIFISHR  141 (163)
T ss_pred             ----HHHHHHHHHHHHhcCCCEEEE-ECCCcCCCHHHHHHHHHHHHHHH-HC--CCEEEEEeCC
Confidence                123344555556677776655 4444478887744 445554442 22  3677888875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.24  E-value=8.7e-11  Score=85.46  Aligned_cols=42  Identities=26%  Similarity=0.275  Sum_probs=37.6

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++|+...+  .+++++|+||+|||||++.|+|...+..|
T Consensus        14 ~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   55 (232)
T cd03218          14 KVVNGVSLSVKQG--EIVGLLGPNGAGKTTTFYMIVGLVKPDSG   55 (232)
T ss_pred             EeeccceeEecCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4678889999998  99999999999999999999998776665

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.24  E-value=7.5e-11  Score=82.12  Aligned_cols=135  Identities=15%  Similarity=0.115  Sum_probs=77.8

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      .+.++++++++.+  ..++++|++|+|||||++.|+|...+..|................+ .....++.+.|.+... +
T Consensus        16 ~~l~~~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~-~~~i~~~~q~~~~~~~-t   91 (173)
T cd03246          16 PVLRNVSFSIEPG--ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNEL-GDHVGYLPQDDELFSG-S   91 (173)
T ss_pred             cceeeeEEEECCC--CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHH-HhheEEECCCCccccC-c
Confidence            3678889999998  9999999999999999999999877655532111100000000000 1223444555544431 1


Q ss_pred             ChHH----HHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHH-HHHHHHHHhhhhcCcEEEEEeCc
Q 030624           86 GSEF----VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGG  148 (174)
Q Consensus        86 ~~~~----~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~~iv~tk~  148 (174)
                      ..+.    =.++....++....+++++++ ..++..++...+.. .+.+.+.. ..  ..++++++|-
T Consensus        92 v~~~lLS~G~~qrv~la~al~~~p~~lll-DEPt~~LD~~~~~~l~~~l~~~~-~~--~~tii~~sh~  155 (173)
T cd03246          92 IAENILSGGQRQRLGLARALYGNPRILVL-DEPNSHLDVEGERALNQAIAALK-AA--GATRIVIAHR  155 (173)
T ss_pred             HHHHCcCHHHHHHHHHHHHHhcCCCEEEE-ECCccccCHHHHHHHHHHHHHHH-hC--CCEEEEEeCC
Confidence            1111    123344455666777885554 44454888887544 45554442 22  3578888884

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=6.1e-10  Score=73.02  Aligned_cols=129  Identities=16%  Similarity=0.177  Sum_probs=90.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ++.+++.+|-.++||||++..|.-..+     ...-+|...++..+.| ++-.+.++|.-|...           ++..+
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-----~~~ipTvGFnvetVty-kN~kfNvwdvGGqd~-----------iRplW   78 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLW   78 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCC-----cccccccceeEEEEEe-eeeEEeeeeccCchh-----------hhHHH
Confidence            358999999999999999988875432     2223455556666666 788999999999887           88899


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh-h-cCcEEEEEeCcCCCCCCh-hhHHHHhcccC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK-I-FDYMIVVFTGGDELEDND-ETLEDYLGREC  166 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~-~-~~~~~iv~tk~D~~~~~~-~~~~~~~~~~~  166 (174)
                      +.++.+..++|||+|..++ +..+ +.-+.+....+.+ . ..+++|+.||-|+.++-. ..+.+|++...
T Consensus        79 rhYy~gtqglIFV~Dsa~~-dr~e-eAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~  147 (180)
T KOG0071|consen   79 RHYYTGTQGLIFVVDSADR-DRIE-EARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELER  147 (180)
T ss_pred             HhhccCCceEEEEEeccch-hhHH-HHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccc
Confidence            9999999999999998655 2222 2223344443332 1 246788899999976532 34667766543

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.24  E-value=4.4e-11  Score=90.36  Aligned_cols=44  Identities=16%  Similarity=0.095  Sum_probs=38.7

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      +..+.++++|+++.|  ..++++|+||||||||++.|+|...+..|
T Consensus         5 ~~~~l~~vs~~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G   48 (302)
T TIGR01188         5 DFKAVDGVNFKVREG--EVFGFLGPNGAGKTTTIRMLTTLLRPTSG   48 (302)
T ss_pred             CeeEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            345778899999998  99999999999999999999998876665

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.23  E-value=2e-10  Score=82.51  Aligned_cols=43  Identities=33%  Similarity=0.347  Sum_probs=38.0

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++.+.+  ..++++|+||+|||||++.|+|...+..|
T Consensus        13 ~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (213)
T cd03301          13 VTALDDLNLDIADG--EFVVLLGPSGCGKTTTLRMIAGLEEPTSG   55 (213)
T ss_pred             eeeeeceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            35678899999998  99999999999999999999998766555

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.23  E-value=2.4e-11  Score=87.51  Aligned_cols=80  Identities=25%  Similarity=0.257  Sum_probs=55.9

Q ss_pred             CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCC
Q 030624            3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   82 (174)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~   82 (174)
                      ++..+.++.+++.+.+  ..++++|++||||||++++|.+...+++|................+ +....|++.--|+++
T Consensus        12 ~~~~av~~v~l~I~~g--ef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~L-Rr~IGYviQqigLFP   88 (309)
T COG1125          12 GNKKAVDDVNLTIEEG--EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVEL-RRKIGYVIQQIGLFP   88 (309)
T ss_pred             CCceeeeeeeEEecCC--eEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHH-HHhhhhhhhhcccCC
Confidence            4567788999999999  9999999999999999999999887777643332222222222222 234567777777776


Q ss_pred             CCC
Q 030624           83 FSA   85 (174)
Q Consensus        83 ~~~   85 (174)
                      ..+
T Consensus        89 h~T   91 (309)
T COG1125          89 HLT   91 (309)
T ss_pred             Ccc
Confidence            443

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.23  E-value=1.4e-10  Score=89.71  Aligned_cols=120  Identities=22%  Similarity=0.383  Sum_probs=88.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc-cccc-------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRA-FKSR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~-~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      -+.|+|+.+...|||||+..|+.+.. |...             ....++|.-.+...+.| ++..+.++||||+-++..
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFGG   83 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFGG   83 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCccc
Confidence            37899999999999999999987642 1111             11236777777778888 889999999999998653


Q ss_pred             ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChh
Q 030624           86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE  156 (174)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~  156 (174)
                             +.-+.+..    +|.+++++|+.++.-++++..++...+.   .  -+-|+|+||.|...+...
T Consensus        84 -------EVERvl~M----VDgvlLlVDA~EGpMPQTrFVlkKAl~~---g--L~PIVVvNKiDrp~Arp~  138 (603)
T COG1217          84 -------EVERVLSM----VDGVLLLVDASEGPMPQTRFVLKKALAL---G--LKPIVVINKIDRPDARPD  138 (603)
T ss_pred             -------hhhhhhhh----cceEEEEEEcccCCCCchhhhHHHHHHc---C--CCcEEEEeCCCCCCCCHH
Confidence                   23333333    3999999999888889998876544443   2  255888999999876433

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.23  E-value=9.2e-11  Score=88.73  Aligned_cols=43  Identities=21%  Similarity=0.273  Sum_probs=38.1

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++|+.+.|  ..++++|+||||||||++.|+|...+..|
T Consensus        20 ~~~l~~vsl~i~~G--ei~gllGpNGaGKSTLl~~l~Gl~~p~~G   62 (306)
T PRK13537         20 KLVVDGLSFHVQRG--ECFGLLGPNGAGKTTTLRMLLGLTHPDAG   62 (306)
T ss_pred             eEEEecceEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            34678899999998  89999999999999999999998877665

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.22  E-value=2.2e-10  Score=81.62  Aligned_cols=43  Identities=16%  Similarity=0.208  Sum_probs=37.8

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++++.+  .+++++|+||+|||||++.|+|..++..|
T Consensus        13 ~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (201)
T cd03231          13 RALFSGLSFTLAAG--EALQVTGPNGSGKTTLLRILAGLSPPLAG   55 (201)
T ss_pred             ceeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            34678889999988  99999999999999999999998876655

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.22  E-value=7.9e-11  Score=89.08  Aligned_cols=72  Identities=21%  Similarity=0.217  Sum_probs=50.6

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   83 (174)
                      +.++++++...|  ..++++||||||||||+++|+|...+++|....+....+....   .+....+++..+-+++.
T Consensus        18 ~l~~i~l~i~~G--ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P---~~R~iamVFQ~yALyPh   89 (338)
T COG3839          18 VLKDVNLDIEDG--EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP---EKRGIAMVFQNYALYPH   89 (338)
T ss_pred             eeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh---hHCCEEEEeCCccccCC
Confidence            678899999999  9999999999999999999999998877754333222222111   12234456666655553

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.22  E-value=8.5e-11  Score=82.50  Aligned_cols=136  Identities=12%  Similarity=0.094  Sum_probs=75.7

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCC---CCCCC
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTP---GLFDF   83 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtp---G~~~~   83 (174)
                      +.++++++.+.+  ..++++|+||+|||||++.|+|...+..|.......................++.+.|   ++...
T Consensus        15 ~l~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~   92 (182)
T cd03215          15 AVRDVSFEVRAG--EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD   92 (182)
T ss_pred             eecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence            457788888888  9999999999999999999999987666532111100000000000012334445443   33432


Q ss_pred             CCChHHHH---------HHHHHHHHhccCCceEEEEEEeCCCCCCHHHHH-HHHHHHHHHhhhhcCcEEEEEeCc
Q 030624           84 SAGSEFVG---------KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGG  148 (174)
Q Consensus        84 ~~~~~~~~---------~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~iv~tk~  148 (174)
                      .+..+.+.         ++....++....+++++++ ..++..++...++ ..+.+.+.. ..  ..++++++|-
T Consensus        93 ~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llll-DEP~~~LD~~~~~~l~~~l~~~~-~~--~~tiii~sh~  163 (182)
T cd03215          93 LSVAENIALSSLLSGGNQQKVVLARWLARDPRVLIL-DEPTRGVDVGAKAEIYRLIRELA-DA--GKAVLLISSE  163 (182)
T ss_pred             CcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEE-CCCCcCCCHHHHHHHHHHHHHHH-HC--CCEEEEEeCC
Confidence            22222221         1233444556677775554 4444478887744 444444442 22  3678888885

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.22  E-value=6e-11  Score=87.62  Aligned_cols=136  Identities=18%  Similarity=0.114  Sum_probs=89.0

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEE--EeCCcEEEEEeCCCCCCCC
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV--LKDGQVVNVIDTPGLFDFS   84 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~iDtpG~~~~~   84 (174)
                      ..++++++.+.|  .+++++|.+|+|||||++.+.+...|++|........-.......  ..+.+..+++.-+.+....
T Consensus        21 al~~vsL~I~~G--eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr   98 (339)
T COG1135          21 ALDDVSLEIPKG--EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR   98 (339)
T ss_pred             eeccceEEEcCC--cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence            467889999999  999999999999999999999998887764322211111110000  0123445666766666544


Q ss_pred             CChHHH-----------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHH-
Q 030624           85 AGSEFV-----------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-  122 (174)
Q Consensus        85 ~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-  122 (174)
                      +..+.+                                         .++-..++++.+.+|+ ++++..+++.+++.+ 
T Consensus        99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~-iLL~DEaTSALDP~TT  177 (339)
T COG1135          99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPK-ILLCDEATSALDPETT  177 (339)
T ss_pred             hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCC-EEEecCccccCChHHH
Confidence            322211                                         2344455555556666 666888887899987 


Q ss_pred             HHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624          123 EAALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus       123 ~~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                      ..+++.|++...+-  .-+++++||
T Consensus       178 ~sIL~LL~~In~~l--glTIvlITH  200 (339)
T COG1135         178 QSILELLKDINREL--GLTIVLITH  200 (339)
T ss_pred             HHHHHHHHHHHHHc--CCEEEEEec
Confidence            67777777775433  578899999

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.22  E-value=1e-10  Score=85.29  Aligned_cols=42  Identities=21%  Similarity=0.283  Sum_probs=37.6

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.+++++++..|  ..++++|+||+|||||++.|+|...+..|
T Consensus        14 ~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G   55 (235)
T cd03261          14 TVLKGVDLDVRRG--EILAIIGPSGSGKSTLLRLIVGLLRPDSG   55 (235)
T ss_pred             EEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4678889999999  99999999999999999999998876655

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.22  E-value=1.3e-10  Score=83.69  Aligned_cols=43  Identities=26%  Similarity=0.210  Sum_probs=38.3

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++|+++.+  ..++++|+||+|||||++.|+|..++..|
T Consensus        17 ~~il~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G   59 (218)
T cd03255          17 VQALKGVSLSIEKG--EFVAIVGPSGSGKSTLLNILGGLDRPTSG   59 (218)
T ss_pred             eeEEeeeEEEEcCC--CEEEEEcCCCCCHHHHHHHHhCCcCCCce
Confidence            34788899999999  99999999999999999999999876655

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.22  E-value=2.2e-10  Score=82.77  Aligned_cols=42  Identities=31%  Similarity=0.297  Sum_probs=37.4

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++.+.+  ..++++|+||+|||||++.|+|...+..|
T Consensus        18 ~il~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   59 (220)
T cd03293          18 TALEDISLSVEEG--EFVALVGPSGCGKSTLLRIIAGLERPTSG   59 (220)
T ss_pred             EEEeceeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4678899999999  99999999999999999999998766555

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.22  E-value=2.2e-10  Score=84.57  Aligned_cols=43  Identities=26%  Similarity=0.387  Sum_probs=38.1

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++|++..|  .+++|+|+||+|||||++.|+|...+..|
T Consensus        25 ~~il~~isl~i~~G--e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G   67 (257)
T PRK11247         25 RTVLNQLDLHIPAG--QFVAVVGRSGCGKSTLLRLLAGLETPSAG   67 (257)
T ss_pred             cceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            45678899999998  99999999999999999999998766555

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.22  E-value=7.7e-11  Score=81.92  Aligned_cols=134  Identities=20%  Similarity=0.173  Sum_probs=76.4

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      .+.++++++++.+  ..++++|+||+|||||++.|+|..++..|................+ .....++.+.|.+.+. +
T Consensus        16 ~~l~~i~~~i~~G--~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~-~~~i~~~~~~~~~~~~-t   91 (171)
T cd03228          16 PVLKDVSLTIKPG--EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESL-RKNIAYVPQDPFLFSG-T   91 (171)
T ss_pred             ccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHH-HhhEEEEcCCchhccc-h
Confidence            4788899999999  9999999999999999999999887655522111100000000000 1123344555544431 1


Q ss_pred             ChHH----HHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHH-HHHHHHHHHhhhhcCcEEEEEeCc
Q 030624           86 GSEF----VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGG  148 (174)
Q Consensus        86 ~~~~----~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~iv~tk~  148 (174)
                      ..+.    -.++....++....+++++++ ...++.++..... ..+.+.+. ..   ..+++++||.
T Consensus        92 ~~e~lLS~G~~~rl~la~al~~~p~llll-DEP~~gLD~~~~~~l~~~l~~~-~~---~~tii~~sh~  154 (171)
T cd03228          92 IRENILSGGQRQRIAIARALLRDPPILIL-DEATSALDPETEALILEALRAL-AK---GKTVIVIAHR  154 (171)
T ss_pred             HHHHhhCHHHHHHHHHHHHHhcCCCEEEE-ECCCcCCCHHHHHHHHHHHHHh-cC---CCEEEEEecC
Confidence            1111    122334445556677775554 3444478877744 44444443 22   3577777875

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.22  E-value=1.8e-10  Score=82.33  Aligned_cols=44  Identities=16%  Similarity=0.166  Sum_probs=38.5

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.++++++++.+  .+++++|+||+|||||++.|+|...+..|.
T Consensus        14 ~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~   57 (204)
T PRK13538         14 RILFSGLSFTLNAG--ELVQIEGPNGAGKTSLLRILAGLARPDAGE   57 (204)
T ss_pred             EEEEecceEEECCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            34678899999999  999999999999999999999988766653

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.21  E-value=1.4e-10  Score=83.31  Aligned_cols=43  Identities=21%  Similarity=0.200  Sum_probs=38.0

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++++.+  .+++++|+||+|||||++.|+|...+..|
T Consensus        15 ~~il~~is~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G   57 (214)
T TIGR02673        15 VAALHDVSLHIRKG--EFLFLTGPSGAGKTTLLKLLYGALTPSRG   57 (214)
T ss_pred             ceeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            35788899999999  99999999999999999999998766555

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.21  E-value=2.3e-10  Score=85.10  Aligned_cols=43  Identities=23%  Similarity=0.178  Sum_probs=38.0

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++.+.+  ..++|+|+||+|||||++.|+|..++..|
T Consensus        37 ~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G   79 (269)
T cd03294          37 TVGVNDVSLDVREG--EIFVIMGLSGSGKSTLLRCINRLIEPTSG   79 (269)
T ss_pred             ceEeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            34678899999998  99999999999999999999998876555

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.20  E-value=1.6e-10  Score=83.42  Aligned_cols=43  Identities=16%  Similarity=0.067  Sum_probs=37.9

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.+++++++..+  ..++++|+||+|||||++.|+|..++..|
T Consensus        13 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G   55 (220)
T cd03265          13 FEAVRGVSFRVRRG--EIFGLLGPNGAGKTTTIKMLTTLLKPTSG   55 (220)
T ss_pred             EEeeeceeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            34678889999988  99999999999999999999998766555

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.20  E-value=1.1e-10  Score=83.97  Aligned_cols=42  Identities=29%  Similarity=0.325  Sum_probs=37.5

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++++.+  ..++++|+||+|||||++.|+|...+..|
T Consensus        17 ~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   58 (216)
T TIGR00960        17 PALDNLNFHITKG--EMVFLVGHSGAGKSTFLKLILGIEKPTRG   58 (216)
T ss_pred             eEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3778899999999  99999999999999999999998766555

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.20  E-value=1.7e-10  Score=83.17  Aligned_cols=42  Identities=21%  Similarity=0.217  Sum_probs=37.9

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++++.+  ..++++|+||+|||||++.|+|..++..|
T Consensus        19 ~il~~~sl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   60 (218)
T cd03266          19 QAVDGVSFTVKPG--EVTGLLGPNGAGKTTTLRMLAGLLEPDAG   60 (218)
T ss_pred             eeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence            4788999999998  99999999999999999999998876665

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.20  E-value=5.7e-10  Score=77.18  Aligned_cols=122  Identities=15%  Similarity=0.130  Sum_probs=71.8

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      .+.++++++...+  .+++++|+||+|||||++.|+|...+..|.......            ....++.+.|.+.. .+
T Consensus        15 ~~l~~i~l~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~------------~~i~~~~q~~~~~~-~t   79 (166)
T cd03223          15 VLLKDLSFEIKPG--DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG------------EDLLFLPQRPYLPL-GT   79 (166)
T ss_pred             eeeecCeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC------------ceEEEECCCCcccc-cc
Confidence            4678889999998  999999999999999999999987665553211110            11112222222211 00


Q ss_pred             ChH-----------HHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHH-HHHHHHHhhhhcCcEEEEEeCcC
Q 030624           86 GSE-----------FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGGD  149 (174)
Q Consensus        86 ~~~-----------~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~~iv~tk~D  149 (174)
                      ..+           .-.++....++....+++.+++- .+++.++....+.+ +.+.+.      ..+++++||-.
T Consensus        80 v~~nl~~~~~~~LS~G~~~rv~laral~~~p~~lllD-EPt~~LD~~~~~~l~~~l~~~------~~tiiivsh~~  148 (166)
T cd03223          80 LREQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLD-EATSALDEESEDRLYQLLKEL------GITVISVGHRP  148 (166)
T ss_pred             HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEE-CCccccCHHHHHHHHHHHHHh------CCEEEEEeCCh
Confidence            001           11233444555566778766653 33447777765444 333332      36788888863

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK10908 cell division protein FtsE; Provisional

Probab=99.20  E-value=2.1e-10  Score=82.98  Aligned_cols=43  Identities=19%  Similarity=0.163  Sum_probs=38.1

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++++.+  ..++++|+||+|||||++.|+|..++..|
T Consensus        15 ~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   57 (222)
T PRK10908         15 RQALQGVTFHMRPG--EMAFLTGHSGAGKSTLLKLICGIERPSAG   57 (222)
T ss_pred             CeEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            35678889999988  99999999999999999999998876665

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.20  E-value=3.4e-10  Score=82.65  Aligned_cols=45  Identities=20%  Similarity=0.164  Sum_probs=38.9

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ...+.++++++++.+  ..++|+|+||+|||||++.|+|...+..|.
T Consensus        33 ~~~il~~vs~~i~~G--e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~   77 (236)
T cd03267          33 EVEALKGISFTIEKG--EIVGFIGPNGAGKTTTLKILSGLLQPTSGE   77 (236)
T ss_pred             CeeeeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence            345788899999998  999999999999999999999987666653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.19  E-value=2.9e-11  Score=80.77  Aligned_cols=121  Identities=18%  Similarity=0.186  Sum_probs=83.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccc-cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+++++|.-=+|||||+-..+... |+.. .++...........+.. ..-.+.+|||.|..+++           ..-.
T Consensus        14 FK~VLLGEGCVGKtSLVLRy~Enk-Fn~kHlsTlQASF~~kk~n~ed-~ra~L~IWDTAGQErfH-----------ALGP   80 (218)
T KOG0088|consen   14 FKIVLLGEGCVGKTSLVLRYVENK-FNCKHLSTLQASFQNKKVNVED-CRADLHIWDTAGQERFH-----------ALGP   80 (218)
T ss_pred             eEEEEEcCCccchhHHHHHHHHhh-cchhhHHHHHHHHhhccccccc-ceeeeeeeeccchHhhh-----------ccCc
Confidence            789999999999999987666543 2222 11122222222222322 33467899999998743           2234


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChh
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE  156 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~  156 (174)
                      .++++.+++++|+|.+++-+..- ..|+..|+..+|..  ...+||.||.|+-+....
T Consensus        81 IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiDLEeeR~V  136 (218)
T KOG0088|consen   81 IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKIDLEEERQV  136 (218)
T ss_pred             eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCcccHHHhhhh
Confidence            57889999999999986655544 78888899998887  588999999999765433

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.19  E-value=2.1e-10  Score=82.21  Aligned_cols=43  Identities=28%  Similarity=0.275  Sum_probs=37.6

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++..++  ..++++|+||+|||||++.|+|..++..|
T Consensus        13 ~~~l~~v~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (210)
T cd03269          13 VTALDDISFSVEKG--EIFGLLGPNGAGKTTTIRMILGIILPDSG   55 (210)
T ss_pred             EEEEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            34678889999988  99999999999999999999998766555

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01858 NGP_1 NGP-1

Probab=99.19  E-value=7.5e-11  Score=80.82  Aligned_cols=56  Identities=23%  Similarity=0.332  Sum_probs=39.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   80 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~   80 (174)
                      ..+++++|.+|+|||||+|+|.+......+. ..+.|.....  +.  ....++++||||+
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~--~~--~~~~~~liDtPGi  157 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQY--IT--LMKRIYLIDCPGV  157 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEE--EE--cCCCEEEEECcCC
Confidence            4788999999999999999999977654443 2333443322  21  3455899999996

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.19  E-value=1.8e-10  Score=91.01  Aligned_cols=123  Identities=17%  Similarity=0.243  Sum_probs=87.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCC-CCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASS-SGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      +..||+++|..|+||||||-+|+....+..-... ...+....+    .+......++||+.-.+           -+.+
T Consensus         8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadv----tPe~vpt~ivD~ss~~~-----------~~~~   72 (625)
T KOG1707|consen    8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADV----TPENVPTSIVDTSSDSD-----------DRLC   72 (625)
T ss_pred             cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCcc----CcCcCceEEEecccccc-----------hhHH
Confidence            3479999999999999999999998765443221 122222221    12344578999985554           2333


Q ss_pred             HHhccCCceEEEEEEeCCC--CCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChh
Q 030624           98 IGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE  156 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~  156 (174)
                      +...++++|+++++...++  .++.....|+-.+++.++...+.|+|+|.||.|.....-.
T Consensus        73 l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~  133 (625)
T KOG1707|consen   73 LRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN  133 (625)
T ss_pred             HHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence            3344566799999987763  4556668999999999888777899999999999876433

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.19  E-value=7.1e-10  Score=86.38  Aligned_cols=89  Identities=19%  Similarity=0.107  Sum_probs=58.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE--------------------e---CCcEEEEEeC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--------------------K---DGQVVNVIDT   77 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--------------------~---~~~~~~~iDt   77 (174)
                      .+|+++|.+++|||||+|+|++.... .+ ..+..|..........                    .   ....+.++||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~-~~-~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVE-IA-NYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCccc-cc-CCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            57999999999999999999987642 21 2233333333322110                    0   1235789999


Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCC
Q 030624           78 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  115 (174)
Q Consensus        78 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  115 (174)
                      ||+..+......+...+.+.++    .+|++++|+|+.
T Consensus        80 aGl~~ga~~g~glg~~fL~~ir----~ad~ll~Vvd~~  113 (396)
T PRK09602         80 AGLVPGAHEGRGLGNQFLDDLR----QADALIHVVDAS  113 (396)
T ss_pred             CCcCCCccchhhHHHHHHHHHH----HCCEEEEEEeCC
Confidence            9998765444445555665555    449999999985

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.19  E-value=4.3e-10  Score=80.91  Aligned_cols=43  Identities=14%  Similarity=0.242  Sum_probs=38.1

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++.+.|  .+++++|+||+|||||++.|+|...+..|
T Consensus        24 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G   66 (214)
T PRK13543         24 EPVFGPLDFHVDAG--EALLVQGDNGAGKTTLLRVLAGLLHVESG   66 (214)
T ss_pred             ceeeecceEEECCC--CEEEEEcCCCCCHHHHHHHHhCCCCCCCe
Confidence            35678889999998  99999999999999999999998876665

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.19  E-value=3.7e-10  Score=80.07  Aligned_cols=134  Identities=13%  Similarity=0.066  Sum_probs=78.3

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc--ccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCC
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR--AFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   82 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~   82 (174)
                      ..+.++++++.+.+  ..++++|+||+|||||++.|+|..  .+..|........ ..  ...+ .....++.+.|.+..
T Consensus        22 ~~~l~~~~~~i~~G--e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~-~~--~~~~-~~~i~~~~q~~~~~~   95 (194)
T cd03213          22 KQLLKNVSGKAKPG--ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP-LD--KRSF-RKIIGYVPQDDILHP   95 (194)
T ss_pred             ccceecceEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEe-Cc--hHhh-hheEEEccCcccCCC
Confidence            35788999999998  999999999999999999999987  6555422111100 00  0011 223345556666554


Q ss_pred             CCCChHHH------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHH-HHHHHHHHhhhhcCcEEEEEeCc
Q 030624           83 FSAGSEFV------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGG  148 (174)
Q Consensus        83 ~~~~~~~~------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~~iv~tk~  148 (174)
                      ..+..+..            .++....++..+.+++++++ ..+++.++....+. .+.+.+. ...  ..++++++|.
T Consensus        96 ~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illl-DEP~~~LD~~~~~~l~~~l~~~-~~~--~~tiii~sh~  170 (194)
T cd03213          96 TLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFL-DEPTSGLDSSSALQVMSLLRRL-ADT--GRTIICSIHQ  170 (194)
T ss_pred             CCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEE-eCCCcCCCHHHHHHHHHHHHHH-HhC--CCEEEEEecC
Confidence            32222211            12223344555667775554 44445888887544 4444443 222  4678888885

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.19  E-value=2.1e-10  Score=86.71  Aligned_cols=43  Identities=23%  Similarity=0.329  Sum_probs=38.2

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++|+.+.|  .+++++|+||||||||++.|+|...+..|
T Consensus        17 ~~~l~~vsl~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G   59 (303)
T TIGR01288        17 KVVVNDLSFTIARG--ECFGLLGPNGAGKSTIARMLLGMISPDRG   59 (303)
T ss_pred             eEEEcceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            34678999999999  99999999999999999999998766555

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.19  E-value=2.2e-10  Score=81.97  Aligned_cols=43  Identities=28%  Similarity=0.297  Sum_probs=37.9

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++|+.+.+  ..++++|+||+|||||++.|+|..++..|
T Consensus        13 ~~~l~~~~~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   55 (208)
T cd03268          13 KRVLDDISLHVKKG--EIYGFLGPNGAGKTTTMKIILGLIKPDSG   55 (208)
T ss_pred             eEeEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            34678889999998  99999999999999999999998776665

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.19  E-value=3.9e-10  Score=76.20  Aligned_cols=112  Identities=19%  Similarity=0.168  Sum_probs=68.4

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      .+.++++++.+.+  ..++++|+||+|||||++.|+|..++..|......    .        ....++.+   +..   
T Consensus        14 ~~l~~~~~~~~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~----~--------~~i~~~~~---lS~---   73 (144)
T cd03221          14 LLLKDISLTINPG--DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS----T--------VKIGYFEQ---LSG---   73 (144)
T ss_pred             eEEEeeEEEECCC--CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECC----e--------EEEEEEcc---CCH---
Confidence            4678889999998  99999999999999999999998765544211110    0        01112222   221   


Q ss_pred             ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHH-HHHHHHHhhhhcCcEEEEEeCc
Q 030624           86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGG  148 (174)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~~iv~tk~  148 (174)
                        .  .++....++....+++.+++- .+...++......+ +.+++.      ..++++++|.
T Consensus        74 --G--~~~rv~laral~~~p~illlD-EP~~~LD~~~~~~l~~~l~~~------~~til~~th~  126 (144)
T cd03221          74 --G--EKMRLALAKLLLENPNLLLLD-EPTNHLDLESIEALEEALKEY------PGTVILVSHD  126 (144)
T ss_pred             --H--HHHHHHHHHHHhcCCCEEEEe-CCccCCCHHHHHHHHHHHHHc------CCEEEEEECC
Confidence              1  233444455566777766653 33347777765444 333332      3578888875

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.18  E-value=1.8e-10  Score=83.21  Aligned_cols=43  Identities=26%  Similarity=0.277  Sum_probs=38.3

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++.+.+  ..++++|+||+|||||++.|+|...+..|
T Consensus        15 ~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   57 (220)
T cd03263          15 KPAVDDLSLNVYKG--EIFGLLGHNGAGKTTTLKMLTGELRPTSG   57 (220)
T ss_pred             ceeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            34788999999999  99999999999999999999998876655

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1.4e-10  Score=92.09  Aligned_cols=136  Identities=22%  Similarity=0.189  Sum_probs=80.8

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      -...+.+++.+.+  .+++++|++|+|||||++.|+|..++..|........-.+.....| +++...+-+-|-+..+..
T Consensus       335 ~~l~~l~~t~~~g--~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~-~k~i~~v~Q~p~lf~gTi  411 (559)
T COG4988         335 PALSDLNLTIKAG--QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAW-RKQISWVSQNPYLFAGTI  411 (559)
T ss_pred             cccCCceeEecCC--cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHH-HhHeeeeCCCCccccccH
Confidence            3567889999999  9999999999999999999999988766654333222222222222 222333344444332111


Q ss_pred             -----------ChHHH---------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHH
Q 030624           86 -----------GSEFV---------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE  121 (174)
Q Consensus        86 -----------~~~~~---------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~  121 (174)
                                 +.+.+                                 ..+-...++....+++++++- .++.+++.+
T Consensus       412 reNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llD-EpTA~LD~e  490 (559)
T COG4988         412 RENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLD-EPTAHLDAE  490 (559)
T ss_pred             HHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEec-CCccCCCHh
Confidence                       00100                                 122334445556666655543 445589888


Q ss_pred             HHH-HHHHHHHHHhhhhcCcEEEEEeCcC
Q 030624          122 EEA-ALHSLQTLFGKKIFDYMIVVFTGGD  149 (174)
Q Consensus       122 ~~~-~l~~l~~~~~~~~~~~~~iv~tk~D  149 (174)
                      +++ +++.|.+.. +   ..+++++||-.
T Consensus       491 tE~~i~~~l~~l~-~---~ktvl~itHrl  515 (559)
T COG4988         491 TEQIILQALQELA-K---QKTVLVITHRL  515 (559)
T ss_pred             HHHHHHHHHHHHH-h---CCeEEEEEcCh
Confidence            854 445555543 2   36888999944

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.18  E-value=9.2e-11  Score=91.29  Aligned_cols=134  Identities=15%  Similarity=0.123  Sum_probs=80.5

Q ss_pred             ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC------CcEEEEEeCCCCC
Q 030624            8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD------GQVVNVIDTPGLF   81 (174)
Q Consensus         8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~------~~~~~~iDtpG~~   81 (174)
                      .++++++...+  ...+++|.||+|||||++.|.|...|++|.............+.+-.+      .+.|.++|+--..
T Consensus        20 nd~V~l~v~~G--eIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~   97 (501)
T COG3845          20 NDDVSLSVKKG--EIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVA   97 (501)
T ss_pred             cCceeeeecCC--cEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchh
Confidence            67788888888  999999999999999999999999888774322111000000000000      1234444443222


Q ss_pred             CCCC-----------ChHHH---------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHH-
Q 030624           82 DFSA-----------GSEFV---------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-  122 (174)
Q Consensus        82 ~~~~-----------~~~~~---------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-  122 (174)
                      ++-.           .....                           .++..++++..+++++.+|+--+ +.-+++.+ 
T Consensus        98 ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEP-TaVLTP~E~  176 (501)
T COG3845          98 ENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEP-TAVLTPQEA  176 (501)
T ss_pred             hhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCC-cccCCHHHH
Confidence            1100           00000                           46667788888899997776444 44788887 


Q ss_pred             HHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624          123 EAALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus       123 ~~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                      .+.++.++++. ..  ...+|++||
T Consensus       177 ~~lf~~l~~l~-~~--G~tIi~ITH  198 (501)
T COG3845         177 DELFEILRRLA-AE--GKTIIFITH  198 (501)
T ss_pred             HHHHHHHHHHH-HC--CCEEEEEec
Confidence            56677777654 33  356777777

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.18  E-value=3.7e-10  Score=80.29  Aligned_cols=43  Identities=16%  Similarity=0.169  Sum_probs=37.8

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++...+  ..++++|+||+|||||++.|+|...+..|
T Consensus        13 ~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (198)
T TIGR01189        13 RMLFEGLSFTLNAG--EALQVTGPNGIGKTTLLRILAGLLRPDSG   55 (198)
T ss_pred             EEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence            34678889999998  99999999999999999999998766555

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.18  E-value=1.8e-10  Score=83.24  Aligned_cols=42  Identities=33%  Similarity=0.412  Sum_probs=37.4

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++|+...+  ..++++|+||+|||||++.|+|...+..|
T Consensus        14 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   55 (222)
T cd03224          14 QILFGVSLTVPEG--EIVALLGRNGAGKTTLLKTIMGLLPPRSG   55 (222)
T ss_pred             eEeeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4678889999998  99999999999999999999998876555

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.18  E-value=6.4e-10  Score=82.11  Aligned_cols=43  Identities=28%  Similarity=0.360  Sum_probs=38.0

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++++.|  .+++|+|+||+|||||++.|+|...+..|
T Consensus        14 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   56 (255)
T PRK11248         14 KPALEDINLTLESG--ELLVVLGPSGCGKTTLLNLIAGFVPYQHG   56 (255)
T ss_pred             eeeEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            34678899999999  99999999999999999999998776555

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.17  E-value=1.5e-10  Score=92.82  Aligned_cols=48  Identities=27%  Similarity=0.339  Sum_probs=41.8

Q ss_pred             CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCC
Q 030624            3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS   52 (174)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~   52 (174)
                      |...+.++.++++..+  .|+++||+||+|||||++.|+|...+..|...
T Consensus        14 g~~~l~~~~~l~~~~G--~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~   61 (530)
T COG0488          14 GDRPLLENVSLTLNPG--ERIGLVGRNGAGKSTLLKILAGELEPDSGEVT   61 (530)
T ss_pred             CCceeecCCcceeCCC--CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEe
Confidence            5566788999999999  99999999999999999999999877666433

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.17  E-value=1.7e-10  Score=83.84  Aligned_cols=42  Identities=26%  Similarity=0.389  Sum_probs=37.7

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++|+++.+  ..++++|+||+|||||++.|+|...+..|
T Consensus        14 ~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (230)
T TIGR03410        14 HILRGVSLEVPKG--EVTCVLGRNGVGKTTLLKTLMGLLPVKSG   55 (230)
T ss_pred             EEecceeeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            4678899999998  99999999999999999999999876665

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.17  E-value=1.2e-10  Score=83.45  Aligned_cols=136  Identities=13%  Similarity=0.123  Sum_probs=85.9

Q ss_pred             CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCC
Q 030624            3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   82 (174)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~   82 (174)
                      |...+.++++|+.+++  ...+++|+|||||||++++|++...+..|...-.    -....... .++..++..--|+++
T Consensus        13 g~k~av~~isf~v~~G--~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~----g~~~~~~~-~~rIGyLPEERGLy~   85 (300)
T COG4152          13 GDKKAVDNISFEVPPG--EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWN----GGPLSQEI-KNRIGYLPEERGLYP   85 (300)
T ss_pred             CceeeecceeeeecCC--eEEEeecCCCCCccchHHHHhccCCccCceEEEc----Ccchhhhh-hhhcccChhhhccCc
Confidence            3445678999999999  9999999999999999999999887655532111    11111111 356677888888876


Q ss_pred             CCCChHHH-----------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHH
Q 030624           83 FSAGSEFV-----------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE  121 (174)
Q Consensus        83 ~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~  121 (174)
                      ..+..+.+                                         +++-...+....-+++.+|+--+-+ ++++.
T Consensus        86 k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFS-GLDPV  164 (300)
T COG4152          86 KMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFS-GLDPV  164 (300)
T ss_pred             cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCcc-CCChh
Confidence            54433322                                         2223333344456788777754445 66666


Q ss_pred             HHHHHHHHHHHHhhhhcCcEEEEEeCc
Q 030624          122 EEAALHSLQTLFGKKIFDYMIVVFTGG  148 (174)
Q Consensus       122 ~~~~l~~l~~~~~~~~~~~~~iv~tk~  148 (174)
                      ..+.++...-.....  ..+++..||.
T Consensus       165 N~elLk~~I~~lk~~--GatIifSsH~  189 (300)
T COG4152         165 NVELLKDAIFELKEE--GATIIFSSHR  189 (300)
T ss_pred             hHHHHHHHHHHHHhc--CCEEEEecch
Confidence            655554443333333  4788888883

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.17  E-value=2e-10  Score=82.36  Aligned_cols=43  Identities=30%  Similarity=0.281  Sum_probs=38.0

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++|+.+.+  ..++++|+||+|||||++.|+|...+..|
T Consensus        14 ~~il~~vs~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~~~G   56 (211)
T cd03225          14 RPALDDISLTIKKG--EFVLIVGPNGSGKSTLLRLLNGLLGPTSG   56 (211)
T ss_pred             eeeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            34788999999998  99999999999999999999998766555

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.17  E-value=3.1e-10  Score=80.84  Aligned_cols=137  Identities=12%  Similarity=0.085  Sum_probs=74.1

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc--ccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR--AFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   83 (174)
                      .+.++++++...+  ..++++|+||+|||||++.|+|..  .+..|.......................++.+.|.+...
T Consensus        14 ~~l~~is~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~   91 (200)
T cd03217          14 EILKGVNLTIKKG--EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPG   91 (200)
T ss_pred             EeeeccceEECCC--cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccC
Confidence            4678889999988  999999999999999999999983  343442111100000000000001123345555544432


Q ss_pred             CCChHH----------HHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHHhhhhcCcEEEEEeCc
Q 030624           84 SAGSEF----------VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGG  148 (174)
Q Consensus        84 ~~~~~~----------~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~iv~tk~  148 (174)
                      ....+.          -.++....++....+++.+++ ..++..++.... ...+.|.+.. ..  ..+++++||.
T Consensus        92 ~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illl-DEPt~~LD~~~~~~l~~~L~~~~-~~--~~tiii~sh~  163 (200)
T cd03217          92 VKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLDIDALRLVAEVINKLR-EE--GKSVLIITHY  163 (200)
T ss_pred             ccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEE-eCCCccCCHHHHHHHHHHHHHHH-HC--CCEEEEEecC
Confidence            111111          122333444556667775554 445558888774 4445555542 22  3577777773

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.16  E-value=3e-10  Score=81.57  Aligned_cols=42  Identities=26%  Similarity=0.264  Sum_probs=37.3

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++|+.+.+  ..++++|+||+|||||++.|+|..++..|
T Consensus        14 ~~l~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (213)
T cd03262          14 HVLKGIDLTVKKG--EVVVIIGPSGSGKSTLLRCINLLEEPDSG   55 (213)
T ss_pred             EeecCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4677889999988  99999999999999999999998766555

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.16  E-value=6.4e-10  Score=81.32  Aligned_cols=43  Identities=33%  Similarity=0.345  Sum_probs=38.0

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++++.+  ..++++|+||+|||||++.|+|...+..|
T Consensus        15 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   57 (239)
T cd03296          15 FVALDDVSLDIPSG--ELVALLGPSGSGKTTLLRLIAGLERPDSG   57 (239)
T ss_pred             EEeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            34678889999999  99999999999999999999998776555

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.16  E-value=7.1e-10  Score=77.33  Aligned_cols=116  Identities=12%  Similarity=0.012  Sum_probs=67.2

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCC
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   86 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~   86 (174)
                      +..+ .++.+.+  .+++++|+||+|||||++.|+|...+..|......      ..       ..++.+.+.+..    
T Consensus        15 ~l~~-~~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g------~~-------i~~~~q~~~LSg----   74 (177)
T cd03222          15 LLVE-LGVVKEG--EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG------IT-------PVYKPQYIDLSG----   74 (177)
T ss_pred             EEcc-CcEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC------EE-------EEEEcccCCCCH----
Confidence            3444 3666777  89999999999999999999998766555321110      00       112222222211    


Q ss_pred             hHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHHhhhhcCcEEEEEeCc
Q 030624           87 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGG  148 (174)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~iv~tk~  148 (174)
                         -.++....++....+++++++ ...+..++.... ...+.+.+.. .+ ...++++++|.
T Consensus        75 ---Gq~qrv~laral~~~p~lllL-DEPts~LD~~~~~~l~~~l~~~~-~~-~~~tiiivsH~  131 (177)
T cd03222          75 ---GELQRVAIAAALLRNATFYLF-DEPSAYLDIEQRLNAARAIRRLS-EE-GKKTALVVEHD  131 (177)
T ss_pred             ---HHHHHHHHHHHHhcCCCEEEE-ECCcccCCHHHHHHHHHHHHHHH-Hc-CCCEEEEEECC
Confidence               124445555666677776655 334447777764 4444444442 21 12577888884

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.16  E-value=3.7e-10  Score=87.46  Aligned_cols=44  Identities=32%  Similarity=0.358  Sum_probs=38.2

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.++++++++.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        16 ~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~   59 (369)
T PRK11000         16 VVISKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLEDITSGD   59 (369)
T ss_pred             eEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence            34677889999988  899999999999999999999998766653

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.16  E-value=3.6e-10  Score=87.09  Aligned_cols=44  Identities=25%  Similarity=0.339  Sum_probs=38.2

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.++++++.+.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        17 ~~~l~~vsl~i~~G--e~~~llG~sGsGKSTLLr~iaGl~~p~~G~   60 (356)
T PRK11650         17 TQVIKGIDLDVADG--EFIVLVGPSGCGKSTLLRMVAGLERITSGE   60 (356)
T ss_pred             CEEEeeeeEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCCCceE
Confidence            34677889999988  899999999999999999999998776653

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.16  E-value=2.4e-10  Score=88.08  Aligned_cols=45  Identities=22%  Similarity=0.229  Sum_probs=39.5

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ...+.++++|+++.|  ..++|+|+||||||||+++|+|...+..|.
T Consensus         5 ~~~~l~~vs~~i~~G--ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~   49 (363)
T TIGR01186         5 GKKGVNDADLAIAKG--EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQ   49 (363)
T ss_pred             CceeEEeeEEEEcCC--CEEEEECCCCChHHHHHHHHhCCCCCCceE
Confidence            344678999999999  999999999999999999999998776663

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.16  E-value=5.5e-10  Score=84.60  Aligned_cols=87  Identities=20%  Similarity=0.161  Sum_probs=55.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE-----------------------eCCcEEEEEeCCC
Q 030624           23 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-----------------------KDGQVVNVIDTPG   79 (174)
Q Consensus        23 i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----------------------~~~~~~~~iDtpG   79 (174)
                      |+++|.+++|||||+|+|++... ..+ ..+..|.........+                       .....+.++||||
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~-~~~-~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG   78 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADV-EIA-NYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG   78 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCC-ccc-CCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence            58999999999999999998763 121 1122333333221111                       0124689999999


Q ss_pred             CCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCC
Q 030624           80 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  115 (174)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  115 (174)
                      +.++......+...+...++    ++|++++|+|+.
T Consensus        79 lv~ga~~~~glg~~fL~~ir----~aD~ii~Vvd~~  110 (318)
T cd01899          79 LVPGAHEGKGLGNKFLDDLR----DADALIHVVDAS  110 (318)
T ss_pred             CCCCccchhhHHHHHHHHHH----HCCEEEEEEeCC
Confidence            97654444444455555544    559999999986

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.15  E-value=5.4e-10  Score=79.19  Aligned_cols=126  Identities=23%  Similarity=0.195  Sum_probs=77.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+++++|..|+|||+|...+.+......- .+...........+.. ....+.++||+|..++.           ....
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y-~ptied~y~k~~~v~~-~~~~l~ilDt~g~~~~~-----------~~~~   69 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDY-DPTIEDSYRKELTVDG-EVCMLEILDTAGQEEFS-----------AMRD   69 (196)
T ss_pred             ceEEEEECCCCCCcchheeeeccccccccc-CCCccccceEEEEECC-EEEEEEEEcCCCcccCh-----------HHHH
Confidence            478999999999999998887776643221 1111122222222211 23456799999955522           2222


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHH
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE  159 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~  159 (174)
                      .+....|++++|++.+++-+.+. ..+.+.|.+..+.. .-|+++|.||+|+.+......+
T Consensus        70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~~R~V~~e  129 (196)
T KOG0395|consen   70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRD-DVPIILVGNKCDLERERQVSEE  129 (196)
T ss_pred             HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcC-CCCEEEEEEcccchhccccCHH
Confidence            34566799999999987666655 44555553332222 2599999999999864323333

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=5.2e-10  Score=86.08  Aligned_cols=123  Identities=21%  Similarity=0.303  Sum_probs=94.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccc-ccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .|+-.|+--.|||||++++++..-- .......+.|.+..++.... .+....++|.||+.+           +...+..
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~-----------~i~~mia   69 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPD-----------FISNLLA   69 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHH-----------HHHHHHh
Confidence            5788899999999999999986521 12234457788888777766 456899999999997           5555556


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHh
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL  162 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~  162 (174)
                      .+..+|..++|+++++++...+.+.+..+.-+ +.   ++.++|+||+|..+.  .++++.+
T Consensus        70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdll-gi---~~giivltk~D~~d~--~r~e~~i  125 (447)
T COG3276          70 GLGGIDYALLVVAADEGLMAQTGEHLLILDLL-GI---KNGIIVLTKADRVDE--ARIEQKI  125 (447)
T ss_pred             hhcCCceEEEEEeCccCcchhhHHHHHHHHhc-CC---CceEEEEeccccccH--HHHHHHH
Confidence            67788999999999889999999998766654 44   378999999999876  3444433

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.15  E-value=3.6e-10  Score=86.88  Aligned_cols=44  Identities=23%  Similarity=0.307  Sum_probs=38.6

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.++++++.+.+  ..++++|+||+|||||++.|+|...+..|.
T Consensus        19 ~~~l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p~~G~   62 (351)
T PRK11432         19 NTVIDNLNLTIKQG--TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQ   62 (351)
T ss_pred             eEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCCCceE
Confidence            34577889999988  999999999999999999999998876663

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.15  E-value=3.3e-10  Score=80.69  Aligned_cols=43  Identities=19%  Similarity=0.213  Sum_probs=38.4

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.+++++++..+  .+++++|+||+|||||++.|+|...+..|
T Consensus        14 ~~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G   56 (200)
T PRK13540         14 QPLLQQISFHLPAG--GLLHLKGSNGAGKTTLLKLIAGLLNPEKG   56 (200)
T ss_pred             eeEEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            45788899999998  99999999999999999999998876665

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.15  E-value=3.3e-10  Score=81.80  Aligned_cols=42  Identities=24%  Similarity=0.239  Sum_probs=37.5

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++...+  .+++++|+||+|||||++.|+|...+..|
T Consensus        19 ~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~~~~G   60 (221)
T TIGR02211        19 RVLKGVSLSIGKG--EIVAIVGSSGSGKSTLLHLLGGLDNPTSG   60 (221)
T ss_pred             EeEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3778889999998  99999999999999999999998776555

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.15  E-value=2.2e-10  Score=81.86  Aligned_cols=43  Identities=33%  Similarity=0.367  Sum_probs=37.9

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++|+.+.|  .+++++|+||+|||||++.|+|...+..|
T Consensus        11 ~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   53 (206)
T TIGR03608        11 KIILDDLNLTIEKG--KMYAIIGESGSGKSTLLNIIGLLEKFDSG   53 (206)
T ss_pred             EEEEeceEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            34678899999998  99999999999999999999998766555

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.14  E-value=6e-10  Score=79.60  Aligned_cols=43  Identities=26%  Similarity=0.346  Sum_probs=38.2

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++|+++.+  ..++++|+||+|||||++.|+|...+..|
T Consensus        13 ~~~l~~v~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   55 (205)
T cd03226          13 TEILDDLSLDLYAG--EIIALTGKNGAGKTTLAKILAGLIKESSG   55 (205)
T ss_pred             CceeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            35778899999998  99999999999999999999998776665

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.14  E-value=3.4e-11  Score=82.09  Aligned_cols=62  Identities=34%  Similarity=0.390  Sum_probs=37.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCC----C-CcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASS----S-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~----~-~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      .+++++|++|+|||||+|+|.+......+...    . ..|+. ...-+.+  +...++|||||+.+...
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt-~~~l~~l--~~g~~iIDTPGf~~~~l  102 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTT-HRELFPL--PDGGYIIDTPGFRSFGL  102 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S---------------SEEEEEE--TTSEEEECSHHHHT--G
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCC-CeeEEec--CCCcEEEECCCCCcccc
Confidence            68999999999999999999997544333211    1 12221 2222222  45678999999988543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.14  E-value=2.4e-10  Score=83.61  Aligned_cols=42  Identities=29%  Similarity=0.328  Sum_probs=37.5

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++.+.|  .+++++|+||+|||||++.|+|...+..|
T Consensus        17 ~~l~~~sl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G   58 (241)
T PRK10895         17 RVVEDVSLTVNSG--EIVGLLGPNGAGKTTTFYMVVGIVPRDAG   58 (241)
T ss_pred             EEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4678889999998  99999999999999999999998776655

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.14  E-value=4e-10  Score=82.07  Aligned_cols=42  Identities=29%  Similarity=0.340  Sum_probs=37.9

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++++.+  ..++++|+||+|||||++.|+|..++..|
T Consensus        19 ~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G   60 (233)
T cd03258          19 TALKDVSLSVPKG--EIFGIIGRSGAGKSTLIRCINGLERPTSG   60 (233)
T ss_pred             eeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4788899999998  99999999999999999999999876655

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.14  E-value=4.8e-10  Score=82.10  Aligned_cols=43  Identities=23%  Similarity=0.249  Sum_probs=37.9

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++++.+  ..++++|+||+|||||++.|+|...+..|
T Consensus        14 ~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   56 (242)
T cd03295          14 KKAVNNLNLEIAKG--EFLVLIGPSGSGKTTTMKMINRLIEPTSG   56 (242)
T ss_pred             ceEeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            34678899999999  99999999999999999999998776555

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.14  E-value=6.2e-10  Score=79.67  Aligned_cols=43  Identities=21%  Similarity=0.250  Sum_probs=37.9

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++.+.+  .+++++|+||+|||||++.|+|...+..|
T Consensus        15 ~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   57 (207)
T PRK13539         15 RVLFSGLSFTLAAG--EALVLTGPNGSGKTTLLRLIAGLLPPAAG   57 (207)
T ss_pred             eEEEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            34678889999998  99999999999999999999998766555

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.14  E-value=7.7e-10  Score=79.38  Aligned_cols=38  Identities=32%  Similarity=0.412  Sum_probs=33.9

Q ss_pred             ccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624           10 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus        10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      +++++...+  .+++++|+||+|||||++.|+|..++..|
T Consensus        16 ~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~gl~~~~~G   53 (211)
T cd03298          16 HFDLTFAQG--EITAIVGPSGSGKSTLLNLIAGFETPQSG   53 (211)
T ss_pred             ceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            777888888  99999999999999999999999876655

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.14  E-value=2.2e-10  Score=81.44  Aligned_cols=46  Identities=26%  Similarity=0.310  Sum_probs=40.2

Q ss_pred             CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      |+.-+..+++++.+.+  .+++++|+||+|||||+++|+|..++..|.
T Consensus        14 G~~~~L~gvsl~v~~G--eiv~llG~NGaGKTTlLkti~Gl~~~~~G~   59 (237)
T COG0410          14 GKIQALRGVSLEVERG--EIVALLGRNGAGKTTLLKTIMGLVRPRSGR   59 (237)
T ss_pred             cceeEEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCee
Confidence            4566788899999999  999999999999999999999998765553

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.14  E-value=2.5e-10  Score=86.20  Aligned_cols=44  Identities=27%  Similarity=0.281  Sum_probs=38.8

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ...+.++++|+++.|  ..++++|+||+|||||++.|+|...+..|
T Consensus        14 ~~~~l~~is~~i~~G--ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G   57 (301)
T TIGR03522        14 TQNALDEVSFEAQKG--RIVGFLGPNGAGKSTTMKIITGYLPPDSG   57 (301)
T ss_pred             CEEEEEEeEEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            345678899999999  99999999999999999999998877665

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.14  E-value=2.9e-10  Score=81.35  Aligned_cols=47  Identities=28%  Similarity=0.369  Sum_probs=42.5

Q ss_pred             CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 030624            3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS   51 (174)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~   51 (174)
                      |...|.++++++.+.|  ...+++|++|+|||||++.|.|...+..|..
T Consensus        19 G~~~Ild~v~l~V~~G--ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI   65 (263)
T COG1127          19 GDRVILDGVDLDVPRG--EILAILGGSGSGKSTLLRLILGLLRPDKGEI   65 (263)
T ss_pred             CCEEEecCceeeecCC--cEEEEECCCCcCHHHHHHHHhccCCCCCCeE
Confidence            5667889999999999  9999999999999999999999998877743

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.13  E-value=4.5e-10  Score=81.84  Aligned_cols=42  Identities=19%  Similarity=0.235  Sum_probs=37.5

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++|+++.+  ..++++|+||+|||||++.|+|...+..|
T Consensus        23 ~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   64 (233)
T PRK11629         23 DVLHNVSFSIGEG--EMMAIVGSSGSGKSTLLHLLGGLDTPTSG   64 (233)
T ss_pred             eeEEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            3688899999998  99999999999999999999998766555

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.13  E-value=1.2e-10  Score=81.47  Aligned_cols=116  Identities=20%  Similarity=0.103  Sum_probs=80.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCccee-eEEEEEEE--eCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST-CEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~--~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ..+++++|..++|||+|+-+.+....+....    +|.. .-...+..  .+...+.+|||.|..+.           -+
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yv----PTVFdnys~~v~V~dg~~v~L~LwDTAGqedY-----------Dr   68 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYV----PTVFDNYSANVTVDDGKPVELGLWDTAGQEDY-----------DR   68 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccCcCccccc----CeEEccceEEEEecCCCEEEEeeeecCCCccc-----------cc
Confidence            3789999999999999998887765432221    2211 11222222  13345799999999872           22


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHH--HHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+++++|+++++++..++.+.+  ...|+..++..++.   -|+++|.+|.|+.++
T Consensus        69 lRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr~d  124 (198)
T KOG0393|consen   69 LRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLRDD  124 (198)
T ss_pred             ccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhhhC
Confidence            1234789999999999987554444  47888877777632   599999999999854

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.13  E-value=3.4e-10  Score=81.37  Aligned_cols=42  Identities=29%  Similarity=0.272  Sum_probs=37.5

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.+++++++..+  ..++++|+||+|||||++.|+|...+..|
T Consensus        15 ~~l~~~sl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   56 (214)
T cd03292          15 AALDGINISISAG--EFVFLVGPSGAGKSTLLKLIYKEELPTSG   56 (214)
T ss_pred             eeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            4778899999998  99999999999999999999998766555

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.13  E-value=4.1e-10  Score=86.68  Aligned_cols=44  Identities=23%  Similarity=0.231  Sum_probs=38.2

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.++++++.+.+  ..++++|+||+|||||++.|+|...+..|.
T Consensus        17 ~~~l~~vs~~i~~G--e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~   60 (353)
T TIGR03265        17 FTALKDISLSVKKG--EFVCLLGPSGCGKTTLLRIIAGLERQTAGT   60 (353)
T ss_pred             eEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHCCCCCCceE
Confidence            34567889999988  999999999999999999999998776663

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.13  E-value=4.1e-10  Score=86.30  Aligned_cols=43  Identities=19%  Similarity=0.181  Sum_probs=38.6

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++|+.+.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        19 ~~L~~vsl~i~~G--ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~   61 (343)
T TIGR02314        19 QALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERPTSGS   61 (343)
T ss_pred             EEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            4688999999999  999999999999999999999998776663

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.13  E-value=7.5e-10  Score=78.17  Aligned_cols=44  Identities=20%  Similarity=0.268  Sum_probs=39.0

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      +..+.++++++++.+  ..++++|+||+|||||++.|+|...+..|
T Consensus         4 ~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G   47 (190)
T TIGR01166         4 GPEVLKGLNFAAERG--EVLALLGANGAGKSTLLLHLNGLLRPQSG   47 (190)
T ss_pred             ccceecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            445788999999999  99999999999999999999998876655

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.13  E-value=4.6e-10  Score=81.36  Aligned_cols=43  Identities=16%  Similarity=0.163  Sum_probs=38.3

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++++.+  ..++|+|+||+|||||++.|+|..++..|
T Consensus        20 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   62 (225)
T PRK10247         20 AKILNNISFSLRAG--EFKLITGPSGCGKSTLLKIVASLISPTSG   62 (225)
T ss_pred             ceeeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            45788899999999  99999999999999999999998766665

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.13  E-value=6.3e-10  Score=81.20  Aligned_cols=44  Identities=23%  Similarity=0.188  Sum_probs=38.3

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.+++++++..+  ..++++|+||+|||||++.|+|..++..|.
T Consensus        14 ~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~   57 (236)
T TIGR03864        14 RRALDDVSFTVRPG--EFVALLGPNGAGKSTLFSLLTRLYVAQEGQ   57 (236)
T ss_pred             EEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence            34678889999988  999999999999999999999998766653

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.13  E-value=6.5e-11  Score=84.74  Aligned_cols=46  Identities=30%  Similarity=0.320  Sum_probs=39.9

Q ss_pred             CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      |+-...++++++...+  .+++++||||+||||++|.|+|..+++.|.
T Consensus        15 GGl~Al~~Vsl~v~~G--ei~~LIGPNGAGKTTlfNlitG~~~P~~G~   60 (250)
T COG0411          15 GGLTAVNDVSLEVRPG--EIVGLIGPNGAGKTTLFNLITGFYKPSSGT   60 (250)
T ss_pred             CCEEEEeceeEEEcCC--eEEEEECCCCCCceeeeeeecccccCCCce
Confidence            3444578888999998  999999999999999999999999887764

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.13  E-value=5.2e-10  Score=81.19  Aligned_cols=41  Identities=29%  Similarity=0.320  Sum_probs=37.3

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      +.++++++++.|  ..++++|+||+|||||++.|+|...+..|
T Consensus        25 ~l~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G   65 (228)
T PRK10584         25 ILTGVELVVKRG--ETIALIGESGSGKSTLLAILAGLDDGSSG   65 (228)
T ss_pred             EEeccEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence            688889999998  99999999999999999999999876655

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.12  E-value=1.9e-10  Score=83.63  Aligned_cols=41  Identities=27%  Similarity=0.290  Sum_probs=37.9

Q ss_pred             ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .++++|+.|.|  .+++++|+|||||||++++|+|...+.+|.
T Consensus        40 Vqdisf~IP~G--~ivgflGaNGAGKSTtLKmLTGll~p~~G~   80 (325)
T COG4586          40 VQDISFEIPKG--EIVGFLGANGAGKSTTLKMLTGLLLPTSGK   80 (325)
T ss_pred             hheeeeecCCC--cEEEEEcCCCCcchhhHHHHhCccccCCCe
Confidence            57889999999  999999999999999999999999887774

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.12  E-value=1e-10  Score=94.66  Aligned_cols=43  Identities=23%  Similarity=0.268  Sum_probs=38.6

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.+.|  .+++++|++|||||||++.|+|...+..|.
T Consensus       349 ~vL~~isl~i~~G--~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~  391 (529)
T TIGR02868       349 PVLDGVSLDLPPG--ERVAILGPSGSGKSTLLMLLTGLLDPLQGE  391 (529)
T ss_pred             ceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            3678889999999  999999999999999999999998776664

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.12  E-value=1.3e-09  Score=80.60  Aligned_cols=47  Identities=28%  Similarity=0.251  Sum_probs=39.8

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCC
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS   52 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~   52 (174)
                      ......++++.++++  ..++++||||||||||++.|+|...++.|...
T Consensus        14 ~~~a~~di~l~i~~G--e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~   60 (345)
T COG1118          14 AFGALDDISLDIKSG--ELVALLGPSGAGKSTLLRIIAGLETPDAGRIR   60 (345)
T ss_pred             cccccccceeeecCC--cEEEEECCCCCcHHHHHHHHhCcCCCCCceEE
Confidence            344456888999988  99999999999999999999999988777443

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.12  E-value=7.5e-10  Score=83.08  Aligned_cols=128  Identities=14%  Similarity=0.198  Sum_probs=91.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc-----------------cccc--------------cCCCCcceeeEEEEEEEeC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRA-----------------FKSR--------------ASSSGVTSTCEMQRTVLKD   68 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~-----------------~~~~--------------~~~~~~t~~~~~~~~~~~~   68 (174)
                      ..|++-+|...-||||||-.|+-..+                 ...+              +...++|.+.....+.. .
T Consensus         6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT-~   84 (431)
T COG2895           6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST-E   84 (431)
T ss_pred             ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc-c
Confidence            38999999999999999977653211                 0000              01137777776666555 7


Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCc
Q 030624           69 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  148 (174)
Q Consensus        69 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~  148 (174)
                      ++.+++.||||+..           +.+-+..-+..+|+.++++|+..++-.+++... .|..++|-+   ++++.+||+
T Consensus        85 KRkFIiADTPGHeQ-----------YTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs-~I~sLLGIr---hvvvAVNKm  149 (431)
T COG2895          85 KRKFIIADTPGHEQ-----------YTRNMATGASTADLAILLVDARKGVLEQTRRHS-FIASLLGIR---HVVVAVNKM  149 (431)
T ss_pred             cceEEEecCCcHHH-----------HhhhhhcccccccEEEEEEecchhhHHHhHHHH-HHHHHhCCc---EEEEEEeee
Confidence            88999999999886           333333456677999999999867766666654 566666665   899999999


Q ss_pred             CCCCCChhhHHHHhc
Q 030624          149 DELEDNDETLEDYLG  163 (174)
Q Consensus       149 D~~~~~~~~~~~~~~  163 (174)
                      |+.+-.++.+++...
T Consensus       150 DLvdy~e~~F~~I~~  164 (431)
T COG2895         150 DLVDYSEEVFEAIVA  164 (431)
T ss_pred             cccccCHHHHHHHHH
Confidence            999877666655443

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.11  E-value=1.3e-09  Score=78.96  Aligned_cols=42  Identities=33%  Similarity=0.388  Sum_probs=38.0

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++.+.|  ..++++|+||+|||||++.|+|...+..|
T Consensus        19 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   60 (228)
T cd03257          19 KALDDVSFSIKKG--ETLGLVGESGSGKSTLARAILGLLKPTSG   60 (228)
T ss_pred             eeecCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4788999999999  99999999999999999999998876665

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.11  E-value=1.7e-09  Score=77.59  Aligned_cols=43  Identities=23%  Similarity=0.276  Sum_probs=39.1

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS   51 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~   51 (174)
                      +.++++|+...|  .+++++|++|||||||.+.|+|...+..|..
T Consensus        22 ~l~~VS~~i~~G--e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I   64 (252)
T COG1124          22 ALNNVSLEIERG--ETLGIVGESGSGKSTLARLLAGLEKPSSGSI   64 (252)
T ss_pred             hhcceeEEecCC--CEEEEEcCCCCCHHHHHHHHhcccCCCCceE
Confidence            678999999999  9999999999999999999999988877643

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.11  E-value=7.5e-10  Score=85.81  Aligned_cols=43  Identities=23%  Similarity=0.289  Sum_probs=37.7

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++++.+  ..++++|+||||||||+++|+|...+..|.
T Consensus        28 ~~l~~vsl~i~~G--e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~   70 (375)
T PRK09452         28 EVISNLDLTINNG--EFLTLLGPSGCGKTTVLRLIAGFETPDSGR   70 (375)
T ss_pred             EEEeeeEEEEeCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence            4567888999888  899999999999999999999998776653

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.11  E-value=1.5e-09  Score=78.05  Aligned_cols=40  Identities=28%  Similarity=0.340  Sum_probs=35.4

Q ss_pred             ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+++++...+  ..++++|+||+|||||++.|+|...+..|
T Consensus        14 ~~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   53 (213)
T TIGR01277        14 PMEFDLNVADG--EIVAIMGPSGAGKSTLLNLIAGFIEPASG   53 (213)
T ss_pred             ceeeEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            45778888888  99999999999999999999998876665

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.11  E-value=4.8e-10  Score=86.08  Aligned_cols=42  Identities=21%  Similarity=0.173  Sum_probs=37.9

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++|+++.|  ..++++|+||||||||++.|+|...+..|
T Consensus        19 ~il~~vsl~i~~G--ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G   60 (343)
T PRK11153         19 HALNNVSLHIPAG--EIFGVIGASGAGKSTLIRCINLLERPTSG   60 (343)
T ss_pred             EEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence            4678899999999  99999999999999999999999876665

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.11  E-value=8.5e-10  Score=81.59  Aligned_cols=43  Identities=28%  Similarity=0.345  Sum_probs=38.3

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++|+++.+  ..++|+|+||+|||||++.|+|...+..|
T Consensus        15 ~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~p~~G   57 (258)
T PRK13548         15 RTLLDDVSLTLRPG--EVVAILGPNGAGKSTLLRALSGELSPDSG   57 (258)
T ss_pred             eeeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            34788899999998  99999999999999999999998776665

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.11  E-value=1.5e-09  Score=79.04  Aligned_cols=43  Identities=23%  Similarity=0.175  Sum_probs=38.3

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++...|  .+++++|+||+|||||++.|+|..++..|
T Consensus        13 ~~il~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~g~~~~~~G   55 (232)
T cd03300          13 FVALDGVSLDIKEG--EFFTLLGPSGCGKTTLLRLIAGFETPTSG   55 (232)
T ss_pred             eeeeccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            35778899999988  99999999999999999999999877665

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.10  E-value=5.2e-10  Score=80.24  Aligned_cols=41  Identities=22%  Similarity=0.127  Sum_probs=35.4

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++|+.+.+   +++++|+||+|||||++.|+|...+..|
T Consensus        14 ~~l~~vs~~i~~g---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   54 (211)
T cd03264          14 RALDGVSLTLGPG---MYGLLGPNGAGKTTLMRILATLTPPSSG   54 (211)
T ss_pred             EEEcceeEEEcCC---cEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence            4677888888885   8899999999999999999998776665

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.10  E-value=6.9e-10  Score=82.62  Aligned_cols=42  Identities=19%  Similarity=0.243  Sum_probs=37.8

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++++.|  ..++++|+||+|||||++.|+|...+..|
T Consensus        23 ~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   64 (271)
T PRK13632         23 NALKNVSFEINEG--EYVAILGHNGSGKSTISKILTGLLKPQSG   64 (271)
T ss_pred             cceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            4788899999998  99999999999999999999999876555

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.10  E-value=2.3e-10  Score=80.04  Aligned_cols=133  Identities=16%  Similarity=0.146  Sum_probs=75.5

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      .+.++++++.+.+  ..++++|+||+|||||++.|+|...+..|............ ...+ .....++.+.|.+... +
T Consensus        16 ~~l~~i~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~-~~~i~~~~q~~~~~~~-t   90 (178)
T cd03247          16 QVLKNLSLELKQG--EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKAL-SSLISVLNQRPYLFDT-T   90 (178)
T ss_pred             cceEEEEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHH-HhhEEEEccCCeeecc-c
Confidence            4778899999999  99999999999999999999998776555321111000000 0000 1122334444433321 1


Q ss_pred             ChH-------HHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHHhhhhcCcEEEEEeCc
Q 030624           86 GSE-------FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGG  148 (174)
Q Consensus        86 ~~~-------~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~iv~tk~  148 (174)
                      ..+       .-.++....++....+++++++ ..+++.++.... ..++.+.+. . .  ..+++++||-
T Consensus        91 v~~~i~~~LS~G~~qrv~laral~~~p~~lll-DEP~~~LD~~~~~~l~~~l~~~-~-~--~~tii~~sh~  156 (178)
T cd03247          91 LRNNLGRRFSGGERQRLALARILLQDAPIVLL-DEPTVGLDPITERQLLSLIFEV-L-K--DKTLIWITHH  156 (178)
T ss_pred             HHHhhcccCCHHHHHHHHHHHHHhcCCCEEEE-ECCcccCCHHHHHHHHHHHHHH-c-C--CCEEEEEecC
Confidence            111       0123344555666777876654 344447887774 444555554 2 2  3577777774

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.10  E-value=1.4e-09  Score=79.46  Aligned_cols=43  Identities=33%  Similarity=0.354  Sum_probs=37.8

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++...|  .+++++|+||+|||||++.|+|...+..|
T Consensus        13 ~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G   55 (237)
T TIGR00968        13 FQALDDVNLEVPTG--SLVALLGPSGSGKSTLLRIIAGLEQPDSG   55 (237)
T ss_pred             eeeeeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            35778889999998  99999999999999999999998766555

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.10  E-value=9.4e-10  Score=81.83  Aligned_cols=42  Identities=29%  Similarity=0.349  Sum_probs=37.3

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++|+++.+  ..++|+|+||+|||||++.|+|...+..|
T Consensus        21 ~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   62 (269)
T PRK11831         21 CIFDNISLTVPRG--KITAIMGPSGIGKTTLLRLIGGQIAPDHG   62 (269)
T ss_pred             EEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4578889999999  99999999999999999999999866555

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.10  E-value=1.1e-09  Score=77.48  Aligned_cols=132  Identities=10%  Similarity=0.025  Sum_probs=74.7

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc--cccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA--FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   83 (174)
                      .+.++++++.+.+  ..++++|+||+|||||++.|+|...  +..|....... .  .. ... .....++.+.|.+...
T Consensus        21 ~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~-~--~~-~~~-~~~i~~~~q~~~~~~~   93 (192)
T cd03232          21 QLLNNISGYVKPG--TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGR-P--LD-KNF-QRSTGYVEQQDVHSPN   93 (192)
T ss_pred             EeEEccEEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCE-e--hH-HHh-hhceEEecccCccccC
Confidence            4678889999988  9999999999999999999999642  33332111000 0  00 001 1233445555655443


Q ss_pred             CCChHHH------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHH-HHHHHHHHhhhhcCcEEEEEeCc
Q 030624           84 SAGSEFV------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGG  148 (174)
Q Consensus        84 ~~~~~~~------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~~iv~tk~  148 (174)
                      .+..+.+            .++....++....+++++++ ..+...++...... .+.+.+. ...  ..+++++||.
T Consensus        94 ~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlll-DEP~~~LD~~~~~~l~~~l~~~-~~~--~~tiiivtH~  167 (192)
T cd03232          94 LTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFL-DEPTSGLDSQAAYNIVRFLKKL-ADS--GQAILCTIHQ  167 (192)
T ss_pred             CcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEE-eCCCcCCCHHHHHHHHHHHHHH-HHc--CCEEEEEEcC
Confidence            2222221            11222334455667775554 44444788887544 4444443 222  3678888886

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.10  E-value=1.3e-09  Score=80.15  Aligned_cols=43  Identities=16%  Similarity=0.216  Sum_probs=37.9

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++|+++.|  ..++++|+||+|||||++.|+|...+..|
T Consensus        16 ~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   58 (250)
T PRK11264         16 QTVLHGIDLEVKPG--EVVAIIGPSGSGKTTLLRCINLLEQPEAG   58 (250)
T ss_pred             eeeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence            35778899999998  99999999999999999999998766555

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.10  E-value=1e-09  Score=84.51  Aligned_cols=44  Identities=30%  Similarity=0.398  Sum_probs=38.5

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.+++++++..+  ..++++|+||+|||||++.|+|...+..|.
T Consensus        15 ~~~l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p~~G~   58 (353)
T PRK10851         15 TQVLNDISLDIPSG--QMVALLGPSGSGKTTLLRIIAGLEHQTSGH   58 (353)
T ss_pred             eEEEEEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            34678889999998  999999999999999999999998776653

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.09  E-value=7.9e-10  Score=80.87  Aligned_cols=43  Identities=23%  Similarity=0.327  Sum_probs=37.9

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++.+.+  .+++++|+||+|||||++.|+|...+..|
T Consensus        14 ~~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G   56 (240)
T PRK09493         14 TQVLHNIDLNIDQG--EVVVIIGPSGSGKSTLLRCINKLEEITSG   56 (240)
T ss_pred             eEEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            34678889999988  99999999999999999999998776665

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.09  E-value=5.5e-10  Score=87.16  Aligned_cols=44  Identities=25%  Similarity=0.295  Sum_probs=38.7

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      +..+.++++|+.+.|  .+++++|+||+|||||+++|+|..++..|
T Consensus        15 ~~~vL~~vs~~i~~G--eiv~liGpNGaGKSTLLk~LaGll~p~sG   58 (402)
T PRK09536         15 DTTVLDGVDLSVREG--SLVGLVGPNGAGKTTLLRAINGTLTPTAG   58 (402)
T ss_pred             CEEEEEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence            345678899999999  99999999999999999999998776665

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.09  E-value=5.1e-10  Score=90.29  Aligned_cols=43  Identities=23%  Similarity=0.227  Sum_probs=38.1

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++|+++.|  ..++++|+||||||||++.|+|...+..|
T Consensus        24 ~~il~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~Gl~~p~~G   66 (510)
T PRK15439         24 VEVLKGIDFTLHAG--EVHALLGGNGAGKSTLMKIIAGIVPPDSG   66 (510)
T ss_pred             ceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            34678999999998  99999999999999999999998876655

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.09  E-value=6.8e-10  Score=81.06  Aligned_cols=42  Identities=21%  Similarity=0.268  Sum_probs=37.5

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++...|  ..++++|+||+|||||++.|+|...+..|
T Consensus        19 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G   60 (237)
T PRK11614         19 QALHEVSLHINQG--EIVTLIGANGAGKTTLLGTLCGDPRATSG   60 (237)
T ss_pred             eeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence            4678889999998  99999999999999999999998876665

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.09  E-value=5.6e-10  Score=83.02  Aligned_cols=41  Identities=27%  Similarity=0.413  Sum_probs=37.1

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      +.++++++++.+  ..++|+|+||+|||||++.|+|...+..|
T Consensus        24 ~l~~isl~i~~G--e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G   64 (269)
T PRK13648         24 TLKDVSFNIPKG--QWTSIVGHNGSGKSTIAKLMIGIEKVKSG   64 (269)
T ss_pred             ceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            678889999998  99999999999999999999999776665

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=8.5e-10  Score=72.46  Aligned_cols=125  Identities=16%  Similarity=0.189  Sum_probs=83.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccc-cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+..++|.-|+|||.|+-.++.... ... .-..+....+.+..+.- .+..+.+|||.|..+           ++...+
T Consensus        12 fkyiiigdmgvgkscllhqftekkf-madcphtigvefgtriievsg-qkiklqiwdtagqer-----------fravtr   78 (215)
T KOG0097|consen   12 FKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVSG-QKIKLQIWDTAGQER-----------FRAVTR   78 (215)
T ss_pred             EEEEEEccccccHHHHHHHHHHHHH-hhcCCcccceecceeEEEecC-cEEEEEEeecccHHH-----------HHHHHH
Confidence            5778999999999999988776542 222 11112222222333322 345689999999887           777777


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHH
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLED  160 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~  160 (174)
                      ..++++...++|.|.+.+-+... ..|+...+.+..+.  ..++++.||+|+.......+++
T Consensus        79 syyrgaagalmvyditrrstynhlsswl~dar~ltnpn--t~i~lignkadle~qrdv~yee  138 (215)
T KOG0097|consen   79 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLESQRDVTYEE  138 (215)
T ss_pred             HHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCc--eEEEEecchhhhhhcccCcHHH
Confidence            88899999999999985544443 56666655554322  3567889999987655455554

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.09  E-value=3.8e-10  Score=81.21  Aligned_cols=108  Identities=19%  Similarity=0.300  Sum_probs=75.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .-|++++|-+.+|||||+..|++...  ........|..|-...++| ++-.+.+.|.||+.++.++..-.+++...   
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgkGRGRQvia---  135 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGKGRGRQVIA---  135 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEEe-cCceEEEecCcccccccccCCCCCceEEE---
Confidence            37999999999999999999998753  2223344555555555566 88899999999999987777666666654   


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK  136 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~  136 (174)
                       .++.+|.+++|+|++ .- ...++.++.-.+..|.+
T Consensus       136 -vArtaDlilMvLDat-k~-e~qr~~le~ELe~vGiR  169 (364)
T KOG1486|consen  136 -VARTADLILMVLDAT-KS-EDQREILEKELEAVGIR  169 (364)
T ss_pred             -EeecccEEEEEecCC-cc-hhHHHHHHHHHHHhcee
Confidence             345669999999998 32 22344444333333444

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.09  E-value=2.2e-09  Score=78.17  Aligned_cols=39  Identities=31%  Similarity=0.345  Sum_probs=34.6

Q ss_pred             cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+++++...+  ..++++|+||+|||||++.|+|...+..|
T Consensus        16 ~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   54 (232)
T PRK10771         16 MRFDLTVERG--ERVAILGPSGAGKSTLLNLIAGFLTPASG   54 (232)
T ss_pred             ceeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            3778888888  99999999999999999999998876665

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.09  E-value=2.2e-09  Score=78.07  Aligned_cols=39  Identities=31%  Similarity=0.314  Sum_probs=34.5

Q ss_pred             cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ++++++++.+  ..++++|+||+|||||++.|+|...+..|
T Consensus         2 ~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   40 (230)
T TIGR01184         2 KGVNLTIQQG--EFISLIGHSGCGKSTLLNLISGLAQPTSG   40 (230)
T ss_pred             CceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4678888888  99999999999999999999999876655

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.08  E-value=1.1e-09  Score=80.19  Aligned_cols=43  Identities=21%  Similarity=0.131  Sum_probs=37.8

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.+++++++..+  ..++++|+||+|||||++.|+|...+..|
T Consensus        16 ~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   58 (241)
T PRK14250         16 KEILKDISVKFEGG--AIYTIVGPSGAGKSTLIKLINRLIDPTEG   58 (241)
T ss_pred             eeeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            34678899999988  99999999999999999999998766665

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.08  E-value=5e-10  Score=78.20  Aligned_cols=74  Identities=14%  Similarity=0.100  Sum_probs=49.1

Q ss_pred             ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624            8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus         8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      ..+++|+...|  ..++++|+||+||||+++.|.+...|+.|...... ......+..+ ..+...+.+-.|+++..+
T Consensus        18 vrdVSF~ae~G--ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg-~d~~~~p~~v-rr~IGVl~~e~glY~RlT   91 (245)
T COG4555          18 VRDVSFEAEEG--EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDG-VDTVRDPSFV-RRKIGVLFGERGLYARLT   91 (245)
T ss_pred             hhheeEEeccc--eEEEEEcCCCCCchhHHHHHHHhccCCCceEEEee-cccccChHHH-hhhcceecCCcChhhhhh
Confidence            35678888888  99999999999999999999998877666322111 1111112222 334455667777776444

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.08  E-value=2.4e-09  Score=77.47  Aligned_cols=42  Identities=31%  Similarity=0.306  Sum_probs=37.3

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.+++++++..+  ..++++|+||+|||||++.|+|..++..|
T Consensus        14 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (223)
T TIGR03740        14 TAVNNISLTVPKN--SVYGLLGPNGAGKSTLLKMITGILRPTSG   55 (223)
T ss_pred             EEEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4678889999988  99999999999999999999998766665

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.08  E-value=8e-10  Score=84.12  Aligned_cols=46  Identities=26%  Similarity=0.224  Sum_probs=40.2

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS   51 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~   51 (174)
                      ...+.+++++++..|  ..++++||+||||||++++|+|...+++|..
T Consensus        17 ~~~av~~isl~i~~G--ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I   62 (352)
T COG3842          17 DFTAVDDISLDIKKG--EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI   62 (352)
T ss_pred             CeeEEecceeeecCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            345578889999998  9999999999999999999999998877743

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.08  E-value=7.8e-10  Score=82.08  Aligned_cols=43  Identities=21%  Similarity=0.269  Sum_probs=37.8

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++|++..+  ..++|+|+||+|||||++.|+|..++..|
T Consensus        24 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   66 (265)
T PRK10575         24 RTLLHPLSLTFPAG--KVTGLIGHNGSGKSTLLKMLGRHQPPSEG   66 (265)
T ss_pred             EEEEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence            34678889999998  99999999999999999999998766555

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=99.08  E-value=1e-08  Score=74.26  Aligned_cols=93  Identities=18%  Similarity=0.089  Sum_probs=57.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC-cccccccCCCCcceeeEEEEEEEe--CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGR-RAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      -..|+++|++++|||||+|.|++. ..+..+.....+|...-.......  .+..+.++||||+.+...........+..
T Consensus         7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~   86 (224)
T cd01851           7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA   86 (224)
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence            368999999999999999999998 345555444445553333322221  24689999999999855433011111111


Q ss_pred             HHHhccCCceEEEEEEeCC
Q 030624           97 CIGMAKDGIHAVLVVFSVR  115 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~  115 (174)
                      ...   .-+++++|.++..
T Consensus        87 l~~---llss~~i~n~~~~  102 (224)
T cd01851          87 LAT---LLSSVLIYNSWET  102 (224)
T ss_pred             HHH---HHhCEEEEeccCc
Confidence            111   1248888877664

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.08  E-value=6.6e-10  Score=83.07  Aligned_cols=41  Identities=22%  Similarity=0.234  Sum_probs=37.5

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      +.+++++++..|  ..++|+|+||+|||||++.|+|...+..|
T Consensus        22 ~l~~vsl~i~~G--e~~~i~G~nGaGKSTLl~~i~G~~~p~~G   62 (279)
T PRK13635         22 ALKDVSFSVYEG--EWVAIVGHNGSGKSTLAKLLNGLLLPEAG   62 (279)
T ss_pred             ceeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence            778899999998  99999999999999999999999877665

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.08  E-value=2.2e-09  Score=76.59  Aligned_cols=40  Identities=23%  Similarity=0.318  Sum_probs=35.9

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA   45 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~   45 (174)
                      +..+.++.+++.+.+  ..++++|+||+|||||++.|+|...
T Consensus        19 ~~~il~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          19 KIPILKDFSGVVKPG--EMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             CceeeeeEEEEECCC--cEEEEECCCCCCHHHHHHHhcccCC
Confidence            345678899999998  9999999999999999999999876

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.08  E-value=9.5e-10  Score=80.54  Aligned_cols=43  Identities=28%  Similarity=0.254  Sum_probs=38.2

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++...+  ..++++|+||+|||||++.|+|...+..|
T Consensus        15 ~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   57 (242)
T PRK11124         15 HQALFDITLDCPQG--ETLVLLGPSGAGKSSLLRVLNLLEMPRSG   57 (242)
T ss_pred             eeeEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            45778889999988  99999999999999999999998776555

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.08  E-value=2e-09  Score=77.40  Aligned_cols=42  Identities=14%  Similarity=0.200  Sum_probs=37.2

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      +.++++|+++.+  ..++++|+||+|||||++.|+|..++..|.
T Consensus         2 vl~~vs~~i~~G--e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~   43 (213)
T PRK15177          2 VLDKTDFVMGYH--EHIGILAAPGSGKTTLTRLLCGLDAPDEGD   43 (213)
T ss_pred             eeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCccCCCCC
Confidence            467889999999  999999999999999999999988766654

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.08  E-value=1.2e-09  Score=84.40  Aligned_cols=41  Identities=24%  Similarity=0.363  Sum_probs=36.8

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS   48 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~   48 (174)
                      .+.++++++.+.+  ..++++|+||+|||||++.|+|...+..
T Consensus        19 ~~l~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~   59 (362)
T TIGR03258        19 TVLDDLSLEIEAG--ELLALIGKSGCGKTTLLRAIAGFVKAAG   59 (362)
T ss_pred             EEEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            4678889999988  8999999999999999999999887766

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=3.5e-09  Score=81.56  Aligned_cols=123  Identities=17%  Similarity=0.265  Sum_probs=85.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh--CCccccccc------------------CCCCcceeeEEEEEEEeCCcEEEEEeCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSIL--GRRAFKSRA------------------SSSGVTSTCEMQRTVLKDGQVVNVIDTP   78 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~--~~~~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~iDtp   78 (174)
                      +.++.+||.++.+|||||-..|+  |......|.                  ...+++..+.+..+.| ++..+.+.|||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDTP   89 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDTP   89 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCCC
Confidence            44789999999999999986653  222222221                  1126677777888888 88999999999


Q ss_pred             CCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhH
Q 030624           79 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL  158 (174)
Q Consensus        79 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~  158 (174)
                      |+.+++   +    +..+.+.+    +|..++|+|+.-++.+.+.+.++--+    .+. .|++-.+||+|....+...+
T Consensus        90 GHeDFS---E----DTYRtLtA----vDsAvMVIDaAKGiE~qT~KLfeVcr----lR~-iPI~TFiNKlDR~~rdP~EL  153 (528)
T COG4108          90 GHEDFS---E----DTYRTLTA----VDSAVMVIDAAKGIEPQTLKLFEVCR----LRD-IPIFTFINKLDREGRDPLEL  153 (528)
T ss_pred             Cccccc---h----hHHHHHHh----hheeeEEEecccCccHHHHHHHHHHh----hcC-CceEEEeeccccccCChHHH
Confidence            999965   2    23333333    39999999997688888877664222    221 59999999999876544443

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.07  E-value=1e-09  Score=85.63  Aligned_cols=41  Identities=20%  Similarity=0.121  Sum_probs=36.9

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..++++|+++.+  ..++|+|+||+|||||++.|+|...+..|
T Consensus        43 ~L~~isl~i~~G--ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG   83 (400)
T PRK10070         43 GVKDASLAIEEG--EIFVIMGLSGSGKSTMVRLLNRLIEPTRG   83 (400)
T ss_pred             EEEeEEEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence            467889999998  99999999999999999999999877665

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.07  E-value=1.8e-09  Score=80.20  Aligned_cols=43  Identities=28%  Similarity=0.363  Sum_probs=38.5

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++++.|  ..++|+|+||+|||||++.|+|...+.+|
T Consensus        24 ~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   66 (265)
T TIGR02769        24 APVLTNVSLSIEEG--ETVGLLGRSGCGKSTLARLLLGLEKPAQG   66 (265)
T ss_pred             eEEeeCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            34788999999999  99999999999999999999999876665

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.07  E-value=1.1e-09  Score=79.92  Aligned_cols=42  Identities=26%  Similarity=0.207  Sum_probs=37.2

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++.+.+  ..++++|+||||||||++.|+|..++..|
T Consensus        14 ~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   55 (236)
T cd03219          14 VALDDVSFSVRPG--EIHGLIGPNGAGKTTLFNLISGFLRPTSG   55 (236)
T ss_pred             EEecCceEEecCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence            3678889999988  99999999999999999999998766555

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.07  E-value=1.3e-10  Score=78.96  Aligned_cols=47  Identities=19%  Similarity=0.240  Sum_probs=41.2

Q ss_pred             CCCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            2 MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+...+..+++++...|  ..++++||+|+|||||++.++....++.|.
T Consensus        13 a~~a~il~~isl~v~~G--e~iaitGPSG~GKStllk~va~Lisp~~G~   59 (223)
T COG4619          13 AGDAKILNNISLSVRAG--EFIAITGPSGCGKSTLLKIVASLISPTSGT   59 (223)
T ss_pred             cCCCeeecceeeeecCC--ceEEEeCCCCccHHHHHHHHHhccCCCCce
Confidence            35667889999999999  999999999999999999999988776663

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.07  E-value=1.4e-09  Score=84.37  Aligned_cols=42  Identities=26%  Similarity=0.241  Sum_probs=37.0

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++.+.+  ..++++|+||+|||||++.|+|...+..|
T Consensus        33 ~~l~~vsl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p~~G   74 (377)
T PRK11607         33 HAVDDVSLTIYKG--EIFALLGASGCGKSTLLRMLAGFEQPTAG   74 (377)
T ss_pred             EEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence            3567888999888  89999999999999999999999877665

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.07  E-value=6.5e-10  Score=79.35  Aligned_cols=145  Identities=17%  Similarity=0.089  Sum_probs=85.0

Q ss_pred             CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE--eCCcEEEEEeCCCC
Q 030624            3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGL   80 (174)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~iDtpG~   80 (174)
                      ++.-..++++++++.+  ..|+++|++|||||||+++|.+...+..|.........+....-..  ...+..++..-|.+
T Consensus        15 ~~~~aL~~Vnl~I~~G--E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL   92 (258)
T COG3638          15 GGHQALKDVNLEINQG--EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL   92 (258)
T ss_pred             CCceeeeeEeEEeCCC--cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence            3445678899999999  9999999999999999999999766555522221111111110000  01234566666665


Q ss_pred             CCCCCChHHH-------------------------------------------------HHHHHHHHHhccCCceEEEEE
Q 030624           81 FDFSAGSEFV-------------------------------------------------GKEIVKCIGMAKDGIHAVLVV  111 (174)
Q Consensus        81 ~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~il~v  111 (174)
                      .......+.+                                                 .++-..+++...+++..++- 
T Consensus        93 v~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILA-  171 (258)
T COG3638          93 VPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILA-  171 (258)
T ss_pred             ccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEec-
Confidence            5432211111                                                 12333444555667775554 


Q ss_pred             EeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624          112 FSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus       112 ~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                      ..+...+++.. ...++.|++...++. .-+++.+..+|++
T Consensus       172 DEPvasLDp~~a~~Vm~~l~~in~~~g-~Tvi~nLH~vdlA  211 (258)
T COG3638         172 DEPVASLDPESAKKVMDILKDINQEDG-ITVIVNLHQVDLA  211 (258)
T ss_pred             CCcccccChhhHHHHHHHHHHHHHHcC-CEEEEEechHHHH
Confidence            33333777776 788888888865542 2344445555664

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.07  E-value=1.1e-09  Score=80.12  Aligned_cols=43  Identities=26%  Similarity=0.239  Sum_probs=38.0

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.+++++++..|  ..++++|+||+|||||++.|+|...+..|
T Consensus        14 ~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   56 (241)
T cd03256          14 KKALKDVSLSINPG--EFVALIGPSGAGKSTLLRCLNGLVEPTSG   56 (241)
T ss_pred             cEEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence            34778899999999  99999999999999999999998766555

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.06  E-value=1.3e-09  Score=81.32  Aligned_cols=42  Identities=17%  Similarity=0.239  Sum_probs=38.0

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++|+++.|  ..++|+|+||+|||||++.|+|...+..|
T Consensus        16 ~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   57 (274)
T PRK13644         16 PALENINLVIKKG--EYIGIIGKNGSGKSTLALHLNGLLRPQKG   57 (274)
T ss_pred             ceeeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            4788999999999  99999999999999999999998776665

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.06  E-value=1.9e-09  Score=80.15  Aligned_cols=42  Identities=21%  Similarity=0.298  Sum_probs=38.2

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++++.+  .+++|+|+||+|||||++.|+|...+..|
T Consensus        27 ~~l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G   68 (267)
T PRK15112         27 EAVKPLSFTLREG--QTLAIIGENGSGKSTLAKMLAGMIEPTSG   68 (267)
T ss_pred             ceeeeeeEEecCC--CEEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence            4788999999999  99999999999999999999999877666

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.06  E-value=2.6e-09  Score=78.72  Aligned_cols=43  Identities=19%  Similarity=0.331  Sum_probs=37.9

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++|+++.+  .+++++|+||+|||||++.|+|...+..|
T Consensus        13 ~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   55 (252)
T TIGR03005        13 LTVLDGLNFSVAAG--EKVALIGPSGSGKSTILRILMTLEPIDEG   55 (252)
T ss_pred             eeEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            34678899999998  99999999999999999999998776555

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.06  E-value=1.2e-09  Score=81.09  Aligned_cols=42  Identities=14%  Similarity=0.248  Sum_probs=37.5

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++...|  .+++|+|+||+|||||++.|+|...+..|
T Consensus        21 ~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G   62 (265)
T PRK10253         21 TVAENLTVEIPDG--HFTAIIGPNGCGKSTLLRTLSRLMTPAHG   62 (265)
T ss_pred             EEeeecceEECCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence            4678899999998  99999999999999999999998766555

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.06  E-value=5.8e-11  Score=77.17  Aligned_cols=113  Identities=13%  Similarity=0.140  Sum_probs=79.2

Q ss_pred             EEcCCCCCHHHHHHHHhCCcccccc--cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 030624           25 LVGRTGNGKSATGNSILGRRAFKSR--ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK  102 (174)
Q Consensus        25 i~G~~g~GKStlin~l~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~  102 (174)
                      ++|.+++|||.|+-..-..... .+  .+..++........... .+..+.+|||.|..+           ++......+
T Consensus         2 llgds~~gktcllir~kdgafl-~~~fistvgid~rnkli~~~~-~kvklqiwdtagqer-----------frsvt~ayy   68 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFL-AGNFISTVGIDFRNKLIDMDD-KKVKLQIWDTAGQER-----------FRSVTHAYY   68 (192)
T ss_pred             ccccCccCceEEEEEeccCcee-cCceeeeeeeccccceeccCC-cEEEEEEeeccchHH-----------HhhhhHhhh
Confidence            6899999999876443332211 21  11222222222332222 345789999999987           666666788


Q ss_pred             CCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          103 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       103 ~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      +.+|.++++.|..++.+.+. +.|+..|.++..+.+  .+.++.||+|+..
T Consensus        69 rda~allllydiankasfdn~~~wlsei~ey~k~~v--~l~llgnk~d~a~  117 (192)
T KOG0083|consen   69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAV--ALMLLGNKCDLAH  117 (192)
T ss_pred             cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhH--hHhhhccccccch
Confidence            99999999999987777665 899999999976663  7889999999964

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.06  E-value=1.1e-09  Score=84.81  Aligned_cols=44  Identities=20%  Similarity=0.219  Sum_probs=38.4

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.++++|+++.+  ..++|+|+||+|||||++.|+|...+..|.
T Consensus        37 ~~~l~~vsf~i~~G--ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~   80 (382)
T TIGR03415        37 VVGVANASLDIEEG--EICVLMGLSGSGKSSLLRAVNGLNPVSRGS   80 (382)
T ss_pred             EEEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence            34568889999998  999999999999999999999998776663

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=1.9e-09  Score=86.81  Aligned_cols=129  Identities=21%  Similarity=0.223  Sum_probs=82.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-----------------------------------------Ccceee
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-----------------------------------------GVTSTC   59 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~-----------------------------------------~~t~~~   59 (174)
                      .+|+|.|.+++||||++|+++-....++|....                                         ......
T Consensus       110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~~  189 (749)
T KOG0448|consen  110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGAG  189 (749)
T ss_pred             cEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCcc
Confidence            689999999999999999998776554442110                                         001111


Q ss_pred             EEEEEEEeCC------cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHH
Q 030624           60 EMQRTVLKDG------QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLF  133 (174)
Q Consensus        60 ~~~~~~~~~~------~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~  133 (174)
                      ....+.|+++      ..+.++|.||+.-...    ....+.    .+...+|+++||+.+.+.++....+++....+. 
T Consensus       190 sLlrV~~p~~~csLLrnDivliDsPGld~~se----~tswid----~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-  260 (749)
T KOG0448|consen  190 SLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE----LTSWID----SFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-  260 (749)
T ss_pred             eEEEEEecCccchhhhccceeccCCCCCCchh----hhHHHH----HHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-
Confidence            1122233222      2478999999986321    112222    344566999999999877777777776555543 


Q ss_pred             hhhhcCcEEEEEeCcCCCCCChhhHHHHh
Q 030624          134 GKKIFDYMIVVFTGGDELEDNDETLEDYL  162 (174)
Q Consensus       134 ~~~~~~~~~iv~tk~D~~~~~~~~~~~~~  162 (174)
                          +++++|+.||||....+..-.++..
T Consensus       261 ----KpniFIlnnkwDasase~ec~e~V~  285 (749)
T KOG0448|consen  261 ----KPNIFILNNKWDASASEPECKEDVL  285 (749)
T ss_pred             ----CCcEEEEechhhhhcccHHHHHHHH
Confidence                3789999999999877533334433

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.05  E-value=1.1e-09  Score=79.03  Aligned_cols=43  Identities=26%  Similarity=0.315  Sum_probs=38.3

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++|+.+.|  .+++|+|+||+|||||++.|+|..++..|
T Consensus        18 ~~il~~vs~~i~~G--~~~~I~G~nGsGKStLl~~l~G~~~~~~G   60 (220)
T TIGR02982        18 KQVLFDINLEINPG--EIVILTGPSGSGKTTLLTLIGGLRSVQEG   60 (220)
T ss_pred             eeEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            34788999999998  99999999999999999999998776655

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=6.1e-10  Score=81.78  Aligned_cols=119  Identities=17%  Similarity=0.237  Sum_probs=85.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   84 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~   84 (174)
                      +.-.|+.+|+...|||||-.+|+..-.-.              ......+.|.......++. .++.+..+|+||.-+  
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaD--   87 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD--   87 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHH--
Confidence            34789999999999999998876532100              0112235666666655555 677889999999876  


Q ss_pred             CChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           85 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                           ..+.++    ..+.+.|..|+|+.++++.-+++++.+-..++. +-   +.+++++||+|..++
T Consensus        88 -----YvKNMI----tgAaqmDgAILVVsA~dGpmPqTrEHiLlarqv-Gv---p~ivvflnK~Dmvdd  143 (394)
T COG0050          88 -----YVKNMI----TGAAQMDGAILVVAATDGPMPQTREHILLARQV-GV---PYIVVFLNKVDMVDD  143 (394)
T ss_pred             -----HHHHHh----hhHHhcCccEEEEEcCCCCCCcchhhhhhhhhc-CC---cEEEEEEecccccCc
Confidence                 344444    445566999999999888889998887544444 43   378999999999985

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.05  E-value=4.2e-10  Score=92.28  Aligned_cols=42  Identities=26%  Similarity=0.427  Sum_probs=37.0

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.++|  .+++++|++|+|||||++.|+|.. +..|.
T Consensus       364 ~vL~~i~l~i~~G--~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~  405 (588)
T PRK11174        364 TLAGPLNFTLPAG--QRIALVGPSGAGKTSLLNALLGFL-PYQGS  405 (588)
T ss_pred             eeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCC-CCCcE
Confidence            4678889999999  999999999999999999999988 55553

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.05  E-value=2.8e-09  Score=82.24  Aligned_cols=39  Identities=26%  Similarity=0.376  Sum_probs=34.4

Q ss_pred             ccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624           10 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus        10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      +++++.+.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        15 ~isl~i~~G--ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~   53 (354)
T TIGR02142        15 DADFTLPGQ--GVTAIFGRSGSGKTTLIRLIAGLTRPDEGE   53 (354)
T ss_pred             EEEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            678888888  899999999999999999999998766653

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.05  E-value=7.1e-10  Score=77.05  Aligned_cols=55  Identities=38%  Similarity=0.483  Sum_probs=40.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   80 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~   80 (174)
                      .+++++|.+|+|||||+|+|++......+. .++.|...  ..+.+  +..+.++||||+
T Consensus       118 ~~~~~vG~pnvGKSslin~l~~~~~~~~~~-~pg~T~~~--~~~~~--~~~~~l~DtPGi  172 (172)
T cd04178         118 ITVGVVGFPNVGKSSLINSLKRSRACNVGA-TPGVTKSM--QEVHL--DKKVKLLDSPGI  172 (172)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCcccceecC-CCCeEcce--EEEEe--CCCEEEEECcCC
Confidence            689999999999999999999987654542 33444432  22222  356899999996

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.05  E-value=1.7e-09  Score=79.18  Aligned_cols=43  Identities=21%  Similarity=0.166  Sum_probs=38.3

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++++.+  ..++++|+||+|||||++.|+|..++..|
T Consensus        15 ~~il~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   57 (243)
T TIGR02315        15 KQALKNINLNINPG--EFVAIIGPSGAGKSTLLRCINRLVEPSSG   57 (243)
T ss_pred             cceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence            35788999999999  99999999999999999999998876555

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.04  E-value=1.4e-09  Score=80.32  Aligned_cols=43  Identities=26%  Similarity=0.310  Sum_probs=38.0

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.+++++++..|  .+++|+|+||+|||||++.|+|..++..|
T Consensus        14 ~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G   56 (256)
T TIGR03873        14 RLIVDGVDVTAPPG--SLTGLLGPNGSGKSTLLRLLAGALRPDAG   56 (256)
T ss_pred             EEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence            35678889999988  99999999999999999999998776555

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.04  E-value=2.9e-09  Score=82.10  Aligned_cols=39  Identities=28%  Similarity=0.393  Sum_probs=34.3

Q ss_pred             ccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624           10 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus        10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      +++++.+.+  ..++++|+||+|||||++.|+|...+..|.
T Consensus        16 ~vsl~i~~G--e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~   54 (352)
T PRK11144         16 TVNLTLPAQ--GITAIFGRSGAGKTSLINAISGLTRPQKGR   54 (352)
T ss_pred             EEEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            678888888  899999999999999999999988766653

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=4.3e-09  Score=83.43  Aligned_cols=138  Identities=19%  Similarity=0.262  Sum_probs=91.7

Q ss_pred             cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc---c-----------cc---------------cccCCCCcceeeEE
Q 030624           11 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRR---A-----------FK---------------SRASSSGVTSTCEM   61 (174)
Q Consensus        11 ~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~---~-----------~~---------------~~~~~~~~t~~~~~   61 (174)
                      ++...+.-....++++|+..+|||||+-.|+=..   -           ..               ..+...+.|.....
T Consensus       168 ~~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~  247 (603)
T KOG0458|consen  168 IDEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKT  247 (603)
T ss_pred             cccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeee
Confidence            3444555567889999999999999987654210   0           00               01122366666666


Q ss_pred             EEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCC-----CC--CHHHHHHHHHHHHHHh
Q 030624           62 QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS-----RF--SQEEEAALHSLQTLFG  134 (174)
Q Consensus        62 ~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~-----~~--~~~~~~~l~~l~~~~~  134 (174)
                      ..++. +...+.++|+||+.++           ..-+-..+..+|+.++|+|++.     ++  ....+++...++.+ |
T Consensus       248 ~~fes-~~~~~tliDaPGhkdF-----------i~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-g  314 (603)
T KOG0458|consen  248 TWFES-KSKIVTLIDAPGHKDF-----------IPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-G  314 (603)
T ss_pred             EEEec-CceeEEEecCCCcccc-----------chhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-C
Confidence            66664 6778999999998773           3333345677899999999861     22  23346666555554 4


Q ss_pred             hhhcCcEEEEEeCcCCCCCChhhHHHHhcc
Q 030624          135 KKIFDYMIVVFTGGDELEDNDETLEDYLGR  164 (174)
Q Consensus       135 ~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~  164 (174)
                      .   ...+|++||+|+..=.+.+.++..++
T Consensus       315 i---~qlivaiNKmD~V~Wsq~RF~eIk~~  341 (603)
T KOG0458|consen  315 I---SQLIVAINKMDLVSWSQDRFEEIKNK  341 (603)
T ss_pred             c---ceEEEEeecccccCccHHHHHHHHHH
Confidence            2   48999999999998665666665443

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=99.04  E-value=4.1e-09  Score=83.35  Aligned_cols=141  Identities=18%  Similarity=0.174  Sum_probs=99.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC----------------------------------------------
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS----------------------------------------------   53 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~----------------------------------------------   53 (174)
                      -+|++++|...+||||.+.+++....|+.|....                                              
T Consensus       308 LPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RM  387 (980)
T KOG0447|consen  308 LPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRM  387 (980)
T ss_pred             CceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHHH
Confidence            3899999999999999999999887776653211                                              


Q ss_pred             ------CcceeeEEEEEEE--eCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHH
Q 030624           54 ------GVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE  123 (174)
Q Consensus        54 ------~~t~~~~~~~~~~--~~~~~~~~iDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~  123 (174)
                            +.|..........  +.-++..++|.||+..+.+  ...++...+.+..+.....+++||+|+.-. ..+.+..
T Consensus       388 r~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDAERS  466 (980)
T KOG0447|consen  388 RKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDAERS  466 (980)
T ss_pred             HhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Ccchhhh
Confidence                  4454444444444  1225689999999987544  344566677788888889999999999776 6666665


Q ss_pred             HHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC---hhhHHHHhc
Q 030624          124 AALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLG  163 (174)
Q Consensus       124 ~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~---~~~~~~~~~  163 (174)
                      ..-+...+.-+..  +++|+|+||+|++..+   ..++.+.+.
T Consensus       467 nVTDLVsq~DP~G--rRTIfVLTKVDlAEknlA~PdRI~kIle  507 (980)
T KOG0447|consen  467 IVTDLVSQMDPHG--RRTIFVLTKVDLAEKNVASPSRIQQIIE  507 (980)
T ss_pred             hHHHHHHhcCCCC--CeeEEEEeecchhhhccCCHHHHHHHHh
Confidence            5555555543223  6899999999997642   244555554

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.04  E-value=5.9e-09  Score=76.80  Aligned_cols=42  Identities=26%  Similarity=0.324  Sum_probs=37.2

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++|+++.+  ..++|+|+||+|||||++.|+|...+..|
T Consensus        18 ~vl~~vs~~i~~G--e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G   59 (251)
T PRK09544         18 RVLSDVSLELKPG--KILTLLGPNGAGKSTLVRVVLGLVAPDEG   59 (251)
T ss_pred             eEEEeEEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            4678889999998  99999999999999999999998766555

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.04  E-value=2e-09  Score=80.10  Aligned_cols=43  Identities=21%  Similarity=0.151  Sum_probs=38.5

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++...|  .+++|+|+||+|||||++.|+|...+..|
T Consensus        14 ~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   56 (271)
T PRK13638         14 EPVLKGLNLDFSLS--PVTGLVGANGCGKSTLFMNLSGLLRPQKG   56 (271)
T ss_pred             cccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCcc
Confidence            45788999999998  99999999999999999999998876665

>PRK13768 GTPase; Provisional

Probab=99.04  E-value=1.5e-09  Score=79.94  Aligned_cols=80  Identities=18%  Similarity=0.157  Sum_probs=50.4

Q ss_pred             EEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCC
Q 030624           71 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE  150 (174)
Q Consensus        71 ~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~  150 (174)
                      .+.++|+||..+.... ......+.+.+....  ++++++++|+....+..+......+..........|+++|+||+|+
T Consensus        98 ~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~  174 (253)
T PRK13768         98 DYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL  174 (253)
T ss_pred             CEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence            5899999998763321 233444444444322  7999999999755556664444333322111223699999999999


Q ss_pred             CCC
Q 030624          151 LED  153 (174)
Q Consensus       151 ~~~  153 (174)
                      ...
T Consensus       175 ~~~  177 (253)
T PRK13768        175 LSE  177 (253)
T ss_pred             cCc
Confidence            876

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.04  E-value=2e-09  Score=79.55  Aligned_cols=43  Identities=16%  Similarity=0.168  Sum_probs=37.9

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++++.+  ..++|+|+||+|||||++.|+|...+..|
T Consensus        18 ~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G   60 (257)
T PRK10619         18 HEVLKGVSLQANAG--DVISIIGSSGSGKSTFLRCINFLEKPSEG   60 (257)
T ss_pred             EEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence            34678899999988  99999999999999999999999876555

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.04  E-value=4e-09  Score=73.06  Aligned_cols=45  Identities=24%  Similarity=0.250  Sum_probs=39.3

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS   51 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~   51 (174)
                      ....++++|..+.+  .-+-++||+|||||||++.|.+...++.|..
T Consensus        15 ~~aL~~vs~~i~~G--ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i   59 (223)
T COG2884          15 REALRDVSFHIPKG--EFVFLTGPSGAGKSTLLKLIYGEERPTRGKI   59 (223)
T ss_pred             chhhhCceEeecCc--eEEEEECCCCCCHHHHHHHHHhhhcCCCceE
Confidence            44678889999998  8999999999999999999999988877643

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.04  E-value=3.6e-09  Score=75.03  Aligned_cols=37  Identities=24%  Similarity=0.182  Sum_probs=33.1

Q ss_pred             cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624           11 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus        11 ~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ++++.+.+  .+++++|+||+|||||++.|+|...+..|
T Consensus        19 vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G   55 (195)
T PRK13541         19 LSITFLPS--AITYIKGANGCGKSSLLRMIAGIMQPSSG   55 (195)
T ss_pred             EEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            77888888  99999999999999999999998776665

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.04  E-value=3.6e-09  Score=77.13  Aligned_cols=127  Identities=17%  Similarity=0.142  Sum_probs=81.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC---ChHHHHH
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA---GSEFVGK   92 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~---~~~~~~~   92 (174)
                      .+...++++.|.+++|||||+|.++...... .+....+.|...+...    -...++++|.||+..+.-   ...++..
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~~  208 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH----VGKSWYEVDLPGYGRAGYGFELPADWDK  208 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee----ccceEEEEecCCcccccCCccCcchHhH
Confidence            4556889999999999999999998765321 2222333343333322    367799999999554322   2334444


Q ss_pred             HHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           93 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....++.....-.. +++.+|++-++...|...++++-+..     -|..+|+||+|...+
T Consensus       209 ~t~~Y~leR~nLv~-~FLLvd~sv~i~~~D~~~i~~~ge~~-----VP~t~vfTK~DK~k~  263 (320)
T KOG2486|consen  209 FTKSYLLERENLVR-VFLLVDASVPIQPTDNPEIAWLGENN-----VPMTSVFTKCDKQKK  263 (320)
T ss_pred             hHHHHHHhhhhhhe-eeeeeeccCCCCCCChHHHHHHhhcC-----CCeEEeeehhhhhhh
Confidence            44444443333333 44556776577777777777777653     588999999998754

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.03  E-value=9.8e-10  Score=82.16  Aligned_cols=41  Identities=24%  Similarity=0.259  Sum_probs=37.6

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      +.+++++++..|  ..++++|+||+|||||++.|+|...+..|
T Consensus        22 ~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   62 (279)
T PRK13650         22 TLNDVSFHVKQG--EWLSIIGHNGSGKSTTVRLIDGLLEAESG   62 (279)
T ss_pred             eeeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            788999999998  99999999999999999999999877666

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.03  E-value=8.4e-10  Score=78.97  Aligned_cols=42  Identities=19%  Similarity=0.237  Sum_probs=37.3

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++++.+  ..++++|++|+|||||++.|+|...+..|
T Consensus        22 ~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G   63 (207)
T cd03369          22 PVLKNVSFKVKAG--EKIGIVGRTGAGKSTLILALFRFLEAEEG   63 (207)
T ss_pred             ccccCceEEECCC--CEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            4678889999988  99999999999999999999998766555

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.03  E-value=2.9e-09  Score=79.69  Aligned_cols=42  Identities=24%  Similarity=0.281  Sum_probs=38.4

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++++.|  ..++|+|+||+|||||++.|+|...+..|
T Consensus        24 ~vl~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   65 (280)
T PRK13633         24 LALDDVNLEVKKG--EFLVILGRNGSGKSTIAKHMNALLIPSEG   65 (280)
T ss_pred             ceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4889999999998  99999999999999999999999877666

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.03  E-value=9e-09  Score=75.60  Aligned_cols=44  Identities=14%  Similarity=0.176  Sum_probs=33.5

Q ss_pred             cccccccCCCCC---CceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            7 IDDDWELTSPSN---GERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         7 ~~~~~~~~~~~~---~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ...++++...++   +..+++|+|+||+|||||++.|+|...+..|.
T Consensus         9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~   55 (246)
T cd03237           9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGD   55 (246)
T ss_pred             ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCe
Confidence            344555555532   33899999999999999999999998766653

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.03  E-value=2.2e-09  Score=73.55  Aligned_cols=126  Identities=19%  Similarity=0.137  Sum_probs=68.4

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      .+..+.+++.+++  ..++++|+||+|||||++.|.|...+..|................+ .....++.+   +..   
T Consensus        13 ~~l~~~~~~i~~g--~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~-~~~i~~~~q---lS~---   83 (157)
T cd00267          13 TALDNVSLTLKAG--EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEEL-RRRIGYVPQ---LSG---   83 (157)
T ss_pred             eeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHH-HhceEEEee---CCH---
Confidence            3567778888888  9999999999999999999999875544321111100000000000 111223333   221   


Q ss_pred             ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHH-HHHHHHHhhhhcCcEEEEEeCc
Q 030624           86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGG  148 (174)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~~iv~tk~  148 (174)
                        .  .++....++....+++.+++ ...+..++......+ +.+.+.. ..  ..++++++|.
T Consensus        84 --G--~~~r~~l~~~l~~~~~i~il-DEp~~~lD~~~~~~l~~~l~~~~-~~--~~tii~~sh~  139 (157)
T cd00267          84 --G--QRQRVALARALLLNPDLLLL-DEPTSGLDPASRERLLELLRELA-EE--GRTVIIVTHD  139 (157)
T ss_pred             --H--HHHHHHHHHHHhcCCCEEEE-eCCCcCCCHHHHHHHHHHHHHHH-HC--CCEEEEEeCC
Confidence              1  22333444455556665554 344447777775444 4444432 22  2577888774

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.02  E-value=2.9e-09  Score=76.53  Aligned_cols=42  Identities=26%  Similarity=0.322  Sum_probs=37.5

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++++.+  ..++++|+||+|||||++.|+|...+..|
T Consensus        13 ~~l~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G   54 (213)
T cd03235          13 PVLEDVSFEVKPG--EFLAIVGPNGAGKSTLLKAILGLLKPTSG   54 (213)
T ss_pred             EeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence            4678889999998  99999999999999999999998776555

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.02  E-value=1.2e-09  Score=73.61  Aligned_cols=56  Identities=30%  Similarity=0.457  Sum_probs=39.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCC
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   82 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~   82 (174)
                      +++++|.+|+|||||+|+|++....... ...+.|...  ..+..  +..++++||||+.-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~--~~~~~--~~~~~i~DtpG~~~  140 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHF--QTIFL--TPTITLCDCPGLVF  140 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccce--EEEEe--CCCEEEEECCCcCC
Confidence            8999999999999999999987754322 223333332  22333  33689999999863

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.02  E-value=1.4e-09  Score=80.21  Aligned_cols=43  Identities=26%  Similarity=0.318  Sum_probs=37.6

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++.+.+  ..++++|+||+|||||++.|+|...+..|
T Consensus        15 ~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   57 (255)
T PRK11231         15 KRILNDLSLSLPTG--KITALIGPNGCGKSTLLKCFARLLTPQSG   57 (255)
T ss_pred             EEEEeeeeeEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence            34678889999998  99999999999999999999998766555

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.02  E-value=2.1e-09  Score=79.33  Aligned_cols=42  Identities=21%  Similarity=0.252  Sum_probs=37.4

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.+++++++..+  ..++++|+||+|||||++.|+|..++..|
T Consensus        19 ~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G   60 (255)
T PRK11300         19 LAVNNVNLEVREQ--EIVSLIGPNGAGKTTVFNCLTGFYKPTGG   60 (255)
T ss_pred             EEEEeeeeEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence            4678889999988  99999999999999999999999776665

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.02  E-value=5.9e-09  Score=74.42  Aligned_cols=42  Identities=31%  Similarity=0.376  Sum_probs=38.1

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++++.+  .+++++|+||+|||||++.|+|...+..|
T Consensus        19 ~il~~~s~~i~~G--~~~~i~G~nG~GKSTLl~~i~G~~~~~~G   60 (204)
T cd03250          19 FTLKDINLEVPKG--ELVAIVGPVGSGKSSLLSALLGELEKLSG   60 (204)
T ss_pred             ceeeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCcCCCCCC
Confidence            4788999999999  99999999999999999999998776665

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.02  E-value=2.2e-09  Score=78.95  Aligned_cols=39  Identities=26%  Similarity=0.287  Sum_probs=35.1

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA   45 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~   45 (174)
                      ..+.++++++++.+  .+++++|+||+|||||++.|+|...
T Consensus        16 ~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14247         16 VEVLDGVNLEIPDN--TITALMGPSGSGKSTLLRVFNRLIE   54 (250)
T ss_pred             eeeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHhccCC
Confidence            34678889999988  9999999999999999999999864

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.02  E-value=1.6e-09  Score=80.87  Aligned_cols=42  Identities=21%  Similarity=0.211  Sum_probs=37.9

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.+++++++..|  .+++|+|+||+|||||++.|+|...+..|
T Consensus        19 ~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   60 (274)
T PRK13647         19 KALKGLSLSIPEG--SKTALLGPNGAGKSTLLLHLNGIYLPQRG   60 (274)
T ss_pred             eeeeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence            4788999999999  99999999999999999999998876655

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.02  E-value=1.7e-09  Score=87.09  Aligned_cols=44  Identities=23%  Similarity=0.236  Sum_probs=38.4

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.++++|+...+  ..++++|+||||||||++.|+|...+..|.
T Consensus        17 ~~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~   60 (501)
T PRK10762         17 VKALSGAALNVYPG--RVMALVGENGAGKSTMMKVLTGIYTRDAGS   60 (501)
T ss_pred             eEEeeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            34678899999998  999999999999999999999988766653

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.01  E-value=1.1e-09  Score=88.83  Aligned_cols=43  Identities=30%  Similarity=0.325  Sum_probs=38.6

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.+.|  .+++++|++|+|||||++.|+|...+..|.
T Consensus       336 ~il~~i~l~i~~G--~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~  378 (529)
T TIGR02857       336 PALRPVSFTVPPG--ERVALVGPSGAGKSTLLNLLLGFVDPTEGS  378 (529)
T ss_pred             ccccceeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            3788899999999  999999999999999999999998776663

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.01  E-value=1.8e-09  Score=86.80  Aligned_cols=53  Identities=21%  Similarity=0.216  Sum_probs=41.3

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE   60 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~   60 (174)
                      .+.++.+|....+  .+|+++|+||+|||||++.|+|...+..|....+.+....
T Consensus       336 ~l~~~~s~~i~~g--~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~ig  388 (530)
T COG0488         336 LLLKDLSFRIDRG--DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIG  388 (530)
T ss_pred             eeecCceEEecCC--CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEE
Confidence            4677888888888  9999999999999999999999876665544444443333

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.01  E-value=2.9e-09  Score=79.56  Aligned_cols=42  Identities=21%  Similarity=0.287  Sum_probs=38.1

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++|+.+.|  .+++|+|+||+|||||++.|+|...+..|
T Consensus        18 ~~l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G   59 (277)
T PRK13652         18 EALNNINFIAPRN--SRIAVIGPNGAGKSTLFRHFNGILKPTSG   59 (277)
T ss_pred             ceeeEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence            3788999999998  99999999999999999999998877666

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=1.7e-09  Score=86.96  Aligned_cols=119  Identities=23%  Similarity=0.254  Sum_probs=79.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCC---------------CCcceeeEEEEEEE----eCCcEEEEEeC
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS---------------SGVTSTCEMQRTVL----KDGQVVNVIDT   77 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~---------------~~~t~~~~~~~~~~----~~~~~~~~iDt   77 (174)
                      +...+.++++|+-++|||+|+..|..+..+......               .+++....-.....    .+.+.+.++||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            344578999999999999999999887654321100               12222222122221    12345799999


Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624           78 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus        78 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                      ||.-.+.       .+..    ..++.+|++++++|+.+++.....+.++...+..     .++++|+||+|.+
T Consensus       205 PGHVnF~-------DE~t----a~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~-----~~i~vviNKiDRL  262 (971)
T KOG0468|consen  205 PGHVNFS-------DETT----ASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNR-----LPIVVVINKVDRL  262 (971)
T ss_pred             CCcccch-------HHHH----HHhhhcceEEEEEEcccCceeeHHHHHHHHHhcc-----CcEEEEEehhHHH
Confidence            9999832       3333    3445559999999998898888877765544432     5999999999985

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.00  E-value=1.3e-09  Score=89.39  Aligned_cols=43  Identities=28%  Similarity=0.237  Sum_probs=38.5

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.+.|  .+++++|++|+|||||++.|+|...+..|.
T Consensus       349 ~iL~~inl~i~~G--~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~  391 (588)
T PRK13657        349 QGVEDVSFEAKPG--QTVAIVGPTGAGKSTLINLLQRVFDPQSGR  391 (588)
T ss_pred             ceecceeEEECCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence            4788899999999  999999999999999999999998776653

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=99.00  E-value=2.7e-09  Score=93.29  Aligned_cols=132  Identities=17%  Similarity=0.221  Sum_probs=80.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccc---cC---CCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCC----hHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSR---AS---SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG----SEFV   90 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~---~~---~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~----~~~~   90 (174)
                      +..+++|++|+||||+++.- |...+-..   ..   ..+.|..     +.|.-.....++||+|..-...+    ....
T Consensus       112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-----c~wwf~~~avliDtaG~y~~~~~~~~~~~~~  185 (1169)
T TIGR03348       112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-----CDWWFTDEAVLIDTAGRYTTQDSDPEEDAAA  185 (1169)
T ss_pred             CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-----cceEecCCEEEEcCCCccccCCCcccccHHH
Confidence            67899999999999999875 44432211   00   1122222     33334556789999997754322    2223


Q ss_pred             HHHHHHHHHhc--cCCceEEEEEEeCCCCCC--HH--------HHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhH
Q 030624           91 GKEIVKCIGMA--KDGIHAVLVVFSVRSRFS--QE--------EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL  158 (174)
Q Consensus        91 ~~~~~~~~~~~--~~~~~~il~v~~~~~~~~--~~--------~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~  158 (174)
                      ...+...++..  .+.+++||++++..+-+.  ..        -+..++.+.+.++..  -|+.+++||+|++.+    .
T Consensus       186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll~G----F  259 (1169)
T TIGR03348       186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLLAG----F  259 (1169)
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhhcC----H
Confidence            34445544432  356899999999873332  21        144456666666555  599999999999854    4


Q ss_pred             HHHhcc
Q 030624          159 EDYLGR  164 (174)
Q Consensus       159 ~~~~~~  164 (174)
                      .+|...
T Consensus       260 ~~~f~~  265 (1169)
T TIGR03348       260 EEFFAD  265 (1169)
T ss_pred             HHHHHh
Confidence            555544

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.00  E-value=1.1e-08  Score=74.16  Aligned_cols=45  Identities=27%  Similarity=0.288  Sum_probs=39.1

Q ss_pred             CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      |...+.++++|+++.+  ..++++|+||+|||||++.|+|...+..|
T Consensus        33 ~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G   77 (224)
T cd03220          33 GEFWALKDVSFEVPRG--ERIGLIGRNGAGKSTLLRLLAGIYPPDSG   77 (224)
T ss_pred             CCeEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3455788999999999  99999999999999999999998766555

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.00  E-value=2.3e-09  Score=77.43  Aligned_cols=42  Identities=24%  Similarity=0.310  Sum_probs=38.1

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++|+++.+  ..++++|+||+|||||++.|+|...+..|
T Consensus        18 ~~l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G   59 (221)
T cd03244          18 PVLKNISFSIKPG--EKVGIVGRTGSGKSSLLLALFRLVELSSG   59 (221)
T ss_pred             ccccceEEEECCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence            4788999999999  99999999999999999999998776655

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.00  E-value=2.2e-09  Score=80.38  Aligned_cols=41  Identities=24%  Similarity=0.321  Sum_probs=36.8

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS   48 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~   48 (174)
                      .+.++++++++.+  ..++|+|+||+|||||++.|+|...+..
T Consensus        21 ~~l~~v~l~i~~G--e~~~I~G~nGaGKSTLl~~l~G~~~p~~   61 (282)
T PRK13640         21 PALNDISFSIPRG--SWTALIGHNGSGKSTISKLINGLLLPDD   61 (282)
T ss_pred             cceeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcccCCCC
Confidence            3788899999998  9999999999999999999999876544

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.00  E-value=6.1e-09  Score=75.97  Aligned_cols=41  Identities=27%  Similarity=0.234  Sum_probs=36.8

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      +.+++++++..+  .+++++|+||+|||||++.|+|...+..|
T Consensus        14 ~l~~is~~i~~G--e~~~i~G~nG~GKStLl~~l~G~~~p~~G   54 (235)
T cd03299          14 KLKNVSLEVERG--DYFVILGPTGSGKSVLLETIAGFIKPDSG   54 (235)
T ss_pred             eeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            577889999988  99999999999999999999998776665

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.00  E-value=8.6e-10  Score=90.51  Aligned_cols=43  Identities=30%  Similarity=0.469  Sum_probs=38.7

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.+.|  .+++++|++|+|||||++.|+|...+..|.
T Consensus       355 ~il~~i~l~i~~G--e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~  397 (592)
T PRK10790        355 LVLQNINLSVPSR--GFVALVGHTGSGKSTLASLLMGYYPLTEGE  397 (592)
T ss_pred             ceeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence            4788999999999  999999999999999999999998776653

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.99  E-value=2.8e-09  Score=76.52  Aligned_cols=41  Identities=24%  Similarity=0.200  Sum_probs=37.9

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      +.+|++|+...|  .+++++|+||||||||++.|.|..+|+.|
T Consensus        42 aL~disf~i~~G--e~vGiiG~NGaGKSTLlkliaGi~~Pt~G   82 (249)
T COG1134          42 ALKDISFEIYKG--ERVGIIGHNGAGKSTLLKLIAGIYKPTSG   82 (249)
T ss_pred             EecCceEEEeCC--CEEEEECCCCCcHHHHHHHHhCccCCCCc
Confidence            478899999999  99999999999999999999999987766

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.99  E-value=3.7e-09  Score=77.40  Aligned_cols=42  Identities=21%  Similarity=0.298  Sum_probs=37.4

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.+++++++..+  ..++++|+||+|||||++.|+|...+..|
T Consensus        16 ~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G   57 (242)
T TIGR03411        16 KALNDLSLYVDPG--ELRVIIGPNGAGKTTMMDVITGKTRPDEG   57 (242)
T ss_pred             EEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            4678889999988  99999999999999999999998766665

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.99  E-value=2.1e-09  Score=78.29  Aligned_cols=42  Identities=36%  Similarity=0.389  Sum_probs=37.9

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++|+.+.+  ..++++|+||+|||||++.|+|...+..|
T Consensus        16 ~~l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   57 (234)
T cd03251          16 PVLRDISLDIPAG--ETVALVGPSGSGKSTLVNLIPRFYDVDSG   57 (234)
T ss_pred             cceeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhccccCCCC
Confidence            4678899999998  99999999999999999999999876665

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.99  E-value=1.5e-09  Score=78.86  Aligned_cols=42  Identities=24%  Similarity=0.292  Sum_probs=38.0

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++++.+  ..++++|+||+|||||+++|+|..++..|
T Consensus        17 ~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G   58 (229)
T cd03254          17 PVLKDINFSIKPG--ETVAIVGPTGAGKTTLINLLMRFYDPQKG   58 (229)
T ss_pred             ccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence            4788999999999  99999999999999999999999876665

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.99  E-value=2.9e-09  Score=74.18  Aligned_cols=34  Identities=32%  Similarity=0.349  Sum_probs=31.1

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      +.++++|+++.+  .+++++|+||+|||||++.++.
T Consensus        10 ~l~~isl~i~~G--~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          10 NLQNLDVSIPLN--VLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             eecceEEEEcCC--CEEEEECCCCCCHHHHHHHHhh
Confidence            467889999999  9999999999999999999873

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.99  E-value=3.2e-09  Score=79.35  Aligned_cols=41  Identities=22%  Similarity=0.202  Sum_probs=37.6

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      +.++++++...|  ..++|+|+||+|||||++.|+|...+..|
T Consensus        22 ~l~~v~l~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G   62 (277)
T PRK13642         22 QLNGVSFSITKG--EWVSIIGQNGSGKSTTARLIDGLFEEFEG   62 (277)
T ss_pred             eeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence            688999999998  99999999999999999999999877665

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.99  E-value=4.2e-09  Score=77.10  Aligned_cols=37  Identities=27%  Similarity=0.392  Sum_probs=33.9

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      .+.++++++++.|  ..++++|+||+|||||++.|+|..
T Consensus        14 ~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~   50 (243)
T TIGR01978        14 EILKGVNLTVKKG--EIHAIMGPNGSGKSTLSKTIAGHP   50 (243)
T ss_pred             EEEeccceEEcCC--CEEEEECCCCCCHHHHHHHHhCCC
Confidence            4678889999998  999999999999999999999984

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.99  E-value=5.2e-09  Score=75.76  Aligned_cols=42  Identities=26%  Similarity=0.272  Sum_probs=37.6

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.+++++++..+  ..++++|+||+|||||++.|+|...+..|
T Consensus        22 ~il~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G   63 (224)
T TIGR02324        22 PVLKNVSLTVNAG--ECVALSGPSGAGKSTLLKSLYANYLPDSG   63 (224)
T ss_pred             EEEecceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            4688899999998  99999999999999999999998766555

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.98  E-value=2e-09  Score=89.80  Aligned_cols=43  Identities=33%  Similarity=0.365  Sum_probs=38.9

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.+.|  .+++++|++|||||||++.|+|...+..|.
T Consensus       467 ~vL~~isl~i~~G--e~vaIvG~sGsGKSTLlklL~gl~~p~~G~  509 (686)
T TIGR03797       467 LILDDVSLQIEPG--EFVAIVGPSGSGKSTLLRLLLGFETPESGS  509 (686)
T ss_pred             cceeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence            4788999999999  999999999999999999999998776663

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.98  E-value=2.1e-08  Score=74.43  Aligned_cols=41  Identities=32%  Similarity=0.308  Sum_probs=36.7

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      +.++++++++.|  .+++++|+||+|||||++.|+|..++..|
T Consensus        39 il~~is~~i~~G--e~~~liG~NGsGKSTLlk~L~Gl~~p~~G   79 (264)
T PRK13546         39 ALDDISLKAYEG--DVIGLVGINGSGKSTLSNIIGGSLSPTVG   79 (264)
T ss_pred             EEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence            567889999998  99999999999999999999998766555

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.98  E-value=4.2e-09  Score=78.92  Aligned_cols=43  Identities=16%  Similarity=0.166  Sum_probs=38.4

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.+++++++..|  ..++++|+||+|||||++.|+|...+..|
T Consensus        19 ~~~l~~vs~~i~~G--e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G   61 (283)
T PRK13636         19 THALKGININIKKG--EVTAILGGNGAGKSTLFQNLNGILKPSSG   61 (283)
T ss_pred             CeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCcc
Confidence            34788999999999  99999999999999999999998876655

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.98  E-value=2.5e-09  Score=86.14  Aligned_cols=43  Identities=21%  Similarity=0.263  Sum_probs=38.1

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++|+.+.|  ..++++|+||+|||||++.|+|...+..|.
T Consensus        18 ~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~   60 (501)
T PRK11288         18 KALDDISFDCRAG--QVHALMGENGAGKSTLLKILSGNYQPDAGS   60 (501)
T ss_pred             EEEeeeeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence            4678899999999  999999999999999999999987766553

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.98  E-value=9.9e-09  Score=74.63  Aligned_cols=37  Identities=35%  Similarity=0.431  Sum_probs=33.6

Q ss_pred             ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 030624            8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF   46 (174)
Q Consensus         8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~   46 (174)
                      .++++++++.+  ..++++|+||+|||||++.|+|...+
T Consensus         2 l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p   38 (230)
T TIGR02770         2 VQDLNLSLKRG--EVLALVGESGSGKSLTCLAILGLLPP   38 (230)
T ss_pred             ccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            46788888888  99999999999999999999998765

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.98  E-value=2.2e-09  Score=73.41  Aligned_cols=56  Identities=29%  Similarity=0.447  Sum_probs=39.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   80 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~   80 (174)
                      ..+++++|.+|+|||||+|+|++......+. ..+.|.....  ...  +..+.++||||+
T Consensus       100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~-~~~~t~~~~~--~~~--~~~~~liDtPG~  155 (155)
T cd01849         100 SITVGVIGYPNVGKSSVINALLNKLKLKVGN-VPGTTTSQQE--VKL--DNKIKLLDTPGI  155 (155)
T ss_pred             CcEEEEEccCCCCHHHHHHHHHccccccccC-CCCcccceEE--EEe--cCCEEEEECCCC
Confidence            4889999999999999999999976433321 1233333322  222  356899999996

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01855 YqeH YqeH

Probab=98.98  E-value=1.3e-09  Score=76.89  Aligned_cols=56  Identities=32%  Similarity=0.423  Sum_probs=37.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccc------cc-CCCCcceeeEEEEEEEeCCcEEEEEeCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKS------RA-SSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   80 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~------~~-~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~   80 (174)
                      .+++++|.+|+|||||+|+|++......      .. ..++.|..  ...+..  +..+.++||||+
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~--~~~~~~~DtPG~  190 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLD--LIKIPL--GNGKKLYDTPGI  190 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeee--eEEEec--CCCCEEEeCcCC
Confidence            6899999999999999999998653211      11 22233333  233322  235799999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.97  E-value=5.2e-09  Score=78.54  Aligned_cols=63  Identities=25%  Similarity=0.385  Sum_probs=45.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS   87 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~   87 (174)
                      ..+++++|.+|+|||||+|+|++......+. .++.|....  .+..  +..+.++||||+..+....
T Consensus       121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~--~~~~--~~~~~l~DtPGi~~~~~~~  183 (287)
T PRK09563        121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQ--WIKL--GKGLELLDTPGILWPKLED  183 (287)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEE--EEEe--CCcEEEEECCCcCCCCCCc
Confidence            3789999999999999999999987544432 344454433  2222  4568999999998765433

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.97  E-value=1.5e-09  Score=88.90  Aligned_cols=43  Identities=28%  Similarity=0.407  Sum_probs=38.6

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++.+++++.|  .+++++|++|+|||||++.|+|...+..|.
T Consensus       357 ~il~~i~l~i~~G--~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~  399 (582)
T PRK11176        357 PALRNINFKIPAG--KTVALVGRSGSGKSTIANLLTRFYDIDEGE  399 (582)
T ss_pred             ccccCceEEeCCC--CEEEEECCCCCCHHHHHHHHHhccCCCCce
Confidence            4788899999999  999999999999999999999998776663

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.97  E-value=7.2e-10  Score=92.74  Aligned_cols=43  Identities=28%  Similarity=0.383  Sum_probs=38.5

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.+.|  .+++++|++|||||||++.|+|...+..|.
T Consensus       493 ~vL~~isl~i~~G--e~vaIvG~sGsGKSTLlklL~gl~~p~~G~  535 (710)
T TIGR03796       493 PLIENFSLTLQPG--QRVALVGGSGSGKSTIAKLVAGLYQPWSGE  535 (710)
T ss_pred             CcccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            4678889999999  999999999999999999999998776663

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.97  E-value=4.2e-09  Score=76.47  Aligned_cols=43  Identities=28%  Similarity=0.261  Sum_probs=38.2

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++++.+  ..++++|+||||||||++.+.|..++..|.
T Consensus        18 ~~l~~v~~~i~~G--e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~   60 (235)
T COG1122          18 AALKDVSLEIEKG--ERVLLIGPNGSGKSTLLKLLNGLLKPTSGE   60 (235)
T ss_pred             eeeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHcCcCcCCCCE
Confidence            4667888999988  999999999999999999999998877664

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=1.7e-09  Score=87.85  Aligned_cols=134  Identities=19%  Similarity=0.152  Sum_probs=81.5

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCC--
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS--   84 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~--   84 (174)
                      |.++++|+.++|  ..+++|||+|+||||+++.|.+.+.|.+|........-.+. ...|.......+-..|=+....  
T Consensus       483 Vlk~lsfti~pG--e~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~-~~~~lr~~Ig~V~QEPvLFs~sI~  559 (716)
T KOG0058|consen  483 VLKNLSFTIRPG--EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDI-NHKYLRRKIGLVGQEPVLFSGSIR  559 (716)
T ss_pred             hhcCceeeeCCC--CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhc-CHHHHHHHeeeeeccceeecccHH
Confidence            678999999999  99999999999999999999999888777443322211111 1112123333444444332211  


Q ss_pred             ---------CChHHH----------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHH
Q 030624           85 ---------AGSEFV----------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE  121 (174)
Q Consensus        85 ---------~~~~~~----------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~  121 (174)
                               .+.+++                                  .++-+.++++..+++. |+++..+++-++.+
T Consensus       560 eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~-VLILDEATSALDae  638 (716)
T KOG0058|consen  560 ENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPR-VLILDEATSALDAE  638 (716)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCC-EEEEechhhhcchh
Confidence                     111111                                  3445556666666666 44456677688888


Q ss_pred             HHHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624          122 EEAALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus       122 ~~~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                      .+..++...+.+..   .++++++.|
T Consensus       639 SE~lVq~aL~~~~~---~rTVlvIAH  661 (716)
T KOG0058|consen  639 SEYLVQEALDRLMQ---GRTVLVIAH  661 (716)
T ss_pred             hHHHHHHHHHHhhc---CCeEEEEeh
Confidence            87776554443322   367777766

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.97  E-value=3.4e-10  Score=87.40  Aligned_cols=121  Identities=20%  Similarity=0.216  Sum_probs=62.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccc----cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFK----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ..+.++|.+|+|||||+|+|++.....    .....++.|..  ...+..  .....++||||+.....-.+.+..+..+
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~--~~~~~~--~~~~~l~DtPG~~~~~~~~~~l~~~~l~  230 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD--LIEIPL--DDGHSLYDTPGIINSHQMAHYLDKKDLK  230 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee--EEEEEe--CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence            589999999999999999999854211    11122333333  222322  3446899999998742111212111111


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                      .+. -..+.....+.++....+.......++.+...   .  ..+.+.+++.+..
T Consensus       231 ~~~-~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~---~--~~~~~~~~~~~~~  279 (360)
T TIGR03597       231 YIT-PKKEIKPKTYQLNPNQTLFLGGLARFDYLKGE---K--TSFTFYVSNELNI  279 (360)
T ss_pred             hcC-CCCccCceEEEeCCCCEEEEceEEEEEEecCC---c--eEEEEEccCCcee
Confidence            211 12345666776665433333333333323221   1  2445555555544

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.97  E-value=1.5e-09  Score=83.22  Aligned_cols=61  Identities=28%  Similarity=0.455  Sum_probs=41.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC----C--cceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      ..++|+|.+|+|||||+|+|++......+....    +  .|+....  +.+  .....++||||+.+...
T Consensus       206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l--~~l--~~~~~liDTPGir~~~l  272 (347)
T PRK12288        206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARL--YHF--PHGGDLIDSPGVREFGL  272 (347)
T ss_pred             CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEE--EEe--cCCCEEEECCCCCcccC
Confidence            468999999999999999999877655543322    1  2222222  222  22346999999998655

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.97  E-value=9.4e-09  Score=74.53  Aligned_cols=39  Identities=28%  Similarity=0.460  Sum_probs=35.5

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA   45 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~   45 (174)
                      ..+.++++++...+  ..++++|+||+|||||++.|+|..+
T Consensus        20 ~~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          20 ARILNDVSLHVESG--QVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             cccccCceEEEcCC--eEEEEECCCCCCHHHHHHHHhCccC
Confidence            35678889999998  9999999999999999999999876

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.97  E-value=1.5e-08  Score=74.88  Aligned_cols=44  Identities=23%  Similarity=0.263  Sum_probs=38.2

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ...+.++++|+...+  ..++|+|+||+|||||++.|+|...+..|
T Consensus        22 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~iaG~~~~~~G   65 (257)
T PRK14246         22 DKAILKDITIKIPNN--SIFGIMGPSGSGKSTLLKVLNRLIEIYDS   65 (257)
T ss_pred             CceeEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCcC
Confidence            345678889999988  99999999999999999999998876554

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.97  E-value=9e-09  Score=76.55  Aligned_cols=43  Identities=28%  Similarity=0.413  Sum_probs=38.2

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++|++..+  .+++|+|+||+|||||++.|+|...+.+|
T Consensus        25 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG   67 (268)
T PRK10419         25 QTVLNNVSLSLKSG--ETVALLGRSGCGKSTLARLLVGLESPSQG   67 (268)
T ss_pred             eeeEeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            34788999999999  99999999999999999999998766555

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.97  E-value=3.4e-09  Score=85.52  Aligned_cols=40  Identities=25%  Similarity=0.279  Sum_probs=36.0

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF   46 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~   46 (174)
                      ..+.++++|++..+  ..++++|+||||||||++.|+|..++
T Consensus        18 ~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~   57 (506)
T PRK13549         18 VKALDNVSLKVRAG--EIVSLCGENGAGKSTLMKVLSGVYPH   57 (506)
T ss_pred             eEeecceeEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34678899999998  99999999999999999999998764

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.96  E-value=2.5e-09  Score=77.96  Aligned_cols=43  Identities=26%  Similarity=0.363  Sum_probs=38.1

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++++.+  ..++++|+||+|||||+++|+|..++..|
T Consensus        14 ~~~l~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G   56 (236)
T cd03253          14 RPVLKDVSFTIPAG--KKVAIVGPSGSGKSTILRLLFRFYDVSSG   56 (236)
T ss_pred             CceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence            34778899999998  99999999999999999999998876665

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.96  E-value=4.8e-10  Score=78.56  Aligned_cols=42  Identities=26%  Similarity=0.322  Sum_probs=37.1

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++.+.+  .+++++|+||+|||||++.|+|...+..|
T Consensus        13 ~~l~~~~~~i~~G--~~~~l~G~nGsGKStLl~~i~G~~~~~~G   54 (180)
T cd03214          13 TVLDDLSLSIEAG--EIVGILGPNGAGKSTLLKTLAGLLKPSSG   54 (180)
T ss_pred             eeEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            4678889999988  99999999999999999999998766555

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.96  E-value=3.2e-09  Score=77.02  Aligned_cols=38  Identities=24%  Similarity=0.260  Sum_probs=34.9

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..+.+++++++..+  ..++++|+||+|||||++.|+|..
T Consensus        13 ~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          13 KHALKDISLDIPKG--EITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             ceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence            34678899999998  999999999999999999999987

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.96  E-value=8.3e-09  Score=76.07  Aligned_cols=40  Identities=23%  Similarity=0.286  Sum_probs=35.9

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF   46 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~   46 (174)
                      ..+.+++++++..|  .+++++|+||+|||||++.|+|...+
T Consensus        17 ~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~   56 (253)
T PRK14267         17 NHVIKGVDLKIPQN--GVFALMGPSGCGKSTLLRTFNRLLEL   56 (253)
T ss_pred             eeeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCc
Confidence            35678899999998  99999999999999999999998754

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.96  E-value=1.5e-09  Score=90.75  Aligned_cols=43  Identities=21%  Similarity=0.241  Sum_probs=38.8

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.++|  .+++++|++|+|||||++.|+|...+..|.
T Consensus       495 ~vL~~isl~i~~G--e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~  537 (711)
T TIGR00958       495 PVLKGLTFTLHPG--EVVALVGPSGSGKSTVAALLQNLYQPTGGQ  537 (711)
T ss_pred             ccccCceEEEcCC--CEEEEECCCCCCHHHHHHHHHhccCCCCCE
Confidence            4788999999999  999999999999999999999998776663

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.96  E-value=3.6e-09  Score=85.05  Aligned_cols=43  Identities=23%  Similarity=0.255  Sum_probs=38.0

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++|+.+.+  ..++++|+||||||||++.|+|...+..|
T Consensus        11 ~~il~~vs~~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G   53 (491)
T PRK10982         11 VKALDNVNLKVRPH--SIHALMGENGAGKSTLLKCLFGIYQKDSG   53 (491)
T ss_pred             EEeeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCCCce
Confidence            34678899999999  99999999999999999999998766555

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.96  E-value=3.1e-10  Score=77.37  Aligned_cols=116  Identities=22%  Similarity=0.158  Sum_probs=80.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE--EEE-EeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTV-LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~-~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ..+++++|.-++||||+|...+... |..+..   .|....+.  .+. ...+....+|||.|..+           +-.
T Consensus        20 aiK~vivGng~VGKssmiqryCkgi-fTkdyk---ktIgvdflerqi~v~~Edvr~mlWdtagqeE-----------fDa   84 (246)
T KOG4252|consen   20 AIKFVIVGNGSVGKSSMIQRYCKGI-FTKDYK---KTIGVDFLERQIKVLIEDVRSMLWDTAGQEE-----------FDA   84 (246)
T ss_pred             hEEEEEECCCccchHHHHHHHhccc-cccccc---cccchhhhhHHHHhhHHHHHHHHHHhccchh-----------HHH
Confidence            4789999999999999999998654 222211   11111111  010 11234567899999887           555


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +.++.++++.+.++|++.+++.+.+. .+|-+.++...+.   .|+++|-||+|+.++
T Consensus        85 ItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlved  139 (246)
T KOG4252|consen   85 ITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVED  139 (246)
T ss_pred             HHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhHh
Confidence            55678899999999999987766664 6777777766433   599999999999864

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.96  E-value=9.4e-09  Score=75.51  Aligned_cols=41  Identities=24%  Similarity=0.313  Sum_probs=36.6

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK   47 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~   47 (174)
                      ..+.++++++.+.|  ..++++|+||+|||||++.|+|...+.
T Consensus        14 ~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~   54 (247)
T TIGR00972        14 KEALKNINLDIPKN--QVTALIGPSGCGKSTLLRSLNRMNDLV   54 (247)
T ss_pred             eeeecceeEEECCC--CEEEEECCCCCCHHHHHHHHhccCCCC
Confidence            34678899999999  999999999999999999999987654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.95  E-value=2e-09  Score=79.83  Aligned_cols=63  Identities=30%  Similarity=0.357  Sum_probs=41.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC----CcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS----GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      .+.+++|++|+|||||+|+|........+..+.    +.-+.+...-+.+  .....++|||||.+...
T Consensus       165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l--~~gG~iiDTPGf~~~~l  231 (301)
T COG1162         165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPL--PGGGWIIDTPGFRSLGL  231 (301)
T ss_pred             CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEc--CCCCEEEeCCCCCccCc
Confidence            688999999999999999999855444442221    1111122222222  35678999999998554

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.95  E-value=1.3e-08  Score=87.15  Aligned_cols=120  Identities=17%  Similarity=0.167  Sum_probs=78.5

Q ss_pred             cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-----------------CcEEE
Q 030624           11 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-----------------GQVVN   73 (174)
Q Consensus        11 ~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~   73 (174)
                      |+++.+.-.-.-.+++++    ||||+.+|.+......  ...+.|.......+.+..                 -..+.
T Consensus       456 ~~~~~~~~~~~~~~~~~~----KTtLLD~iR~t~v~~~--EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~  529 (1049)
T PRK14845        456 YDLTTETHNFIANGILVH----NTTLLDKIRKTRVAKK--EAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLL  529 (1049)
T ss_pred             EEEEeccCcceeeeeecc----cccHHHHHhCCCcccc--cCCCceeccceEEEEecccccccccccccccccCCcCcEE
Confidence            344444322233344433    9999999999887433  345555555444443311                 01379


Q ss_pred             EEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           74 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        74 ~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ++||||+.++           ..........+|++++|+|+++++...+.+.++.+...   .  .|+++++||+|+..
T Consensus       530 fiDTPGhe~F-----------~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~---~--iPiIVViNKiDL~~  592 (1049)
T PRK14845        530 FIDTPGHEAF-----------TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY---K--TPFVVAANKIDLIP  592 (1049)
T ss_pred             EEECCCcHHH-----------HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc---C--CCEEEEEECCCCcc
Confidence            9999997652           22222345668999999999878888888887766653   2  58999999999864

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.95  E-value=8.6e-09  Score=77.39  Aligned_cols=42  Identities=26%  Similarity=0.242  Sum_probs=38.2

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++|++..|  ..++|+|+||+|||||++.|+|...+..|
T Consensus        21 ~~l~~vs~~i~~G--e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G   62 (287)
T PRK13637         21 KALDNVNIEIEDG--EFVGLIGHTGSGKSTLIQHLNGLLKPTSG   62 (287)
T ss_pred             ceeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCcc
Confidence            4788999999999  99999999999999999999998877665

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.95  E-value=1.8e-09  Score=88.22  Aligned_cols=43  Identities=19%  Similarity=0.176  Sum_probs=38.3

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.+.|  .+++++|++|+|||||++.|+|...+..|.
T Consensus       329 ~~l~~i~~~i~~G--~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~  371 (569)
T PRK10789        329 PALENVNFTLKPG--QMLGICGPTGSGKSTLLSLIQRHFDVSEGD  371 (569)
T ss_pred             ccccCeeEEECCC--CEEEEECCCCCCHHHHHHHHhcccCCCCCE
Confidence            4678889999998  999999999999999999999998776663

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.95  E-value=3.9e-09  Score=83.44  Aligned_cols=43  Identities=26%  Similarity=0.228  Sum_probs=38.7

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ...++++|+...+  ...+++|.||+|||||++.|+|...+++|.
T Consensus        22 ~AL~~v~l~v~~G--EV~aL~GeNGAGKSTLmKiLsGv~~p~~G~   64 (500)
T COG1129          22 KALDGVSLTVRPG--EVHALLGENGAGKSTLMKILSGVYPPDSGE   64 (500)
T ss_pred             eeeccceeEEeCc--eEEEEecCCCCCHHHHHHHHhCcccCCCce
Confidence            4578889999999  999999999999999999999999887764

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.95  E-value=1.7e-08  Score=71.23  Aligned_cols=41  Identities=27%  Similarity=0.371  Sum_probs=35.0

Q ss_pred             CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624            3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA   45 (174)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~   45 (174)
                      |...+.+++++.++.+  ...+++||+|||||||++++....-
T Consensus        18 g~~~aL~~i~l~i~~~--~VTAlIGPSGcGKST~LR~lNRmnd   58 (253)
T COG1117          18 GDKHALKDINLDIPKN--KVTALIGPSGCGKSTLLRCLNRMND   58 (253)
T ss_pred             CchhhhccCceeccCC--ceEEEECCCCcCHHHHHHHHHhhcc
Confidence            4455678899999998  9999999999999999999877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
3lxx_A	239	Crystal Structure Of Human Gtpase Imap Family Membe		2e-20
2xtm_A	234	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		3e-16
3p1j_A	209	Crystal Structure Of Human Gtpase Imap Family Membe		3e-16
2xto_A	240	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		6e-16
2xtp_A	260	Crystal Structure Of Nucleotide-Free Human Gimap2,		1e-15
3v70_A	247	Crystal Structure Of Human Gtpase Imap Family Membe		2e-14

>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4 Length = 239

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 16  PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVI 75
           P N +  +VLVG+TG GKSATGNSILGR+ F S  ++  +T  CE + +  K+ ++V V+
Sbjct: 25  PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 76  DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGK 135
           DTPG+FD    +    KEI++CI +   G HA+L          +EE  A   +   FG+
Sbjct: 84  DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALL-LVVPLGRYTEEEHKATEKILKXFGE 142
Query: 136 KIFDYMIVVF 145
           +   + I++F
Sbjct: 143 RARSFXILIF 152

>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 1-234 Length = 234

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 17  SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 76
           S  E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +ID
Sbjct: 19  SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 77
Query: 77  TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 136
           TP +F +    E + KE+ +C  ++  G H +L          Q+++AA   ++ +FG+ 
Sbjct: 78  TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGED 136
Query: 137 IFDYMIVVF 145
              + IV+F
Sbjct: 137 AMGHTIVLF 145

>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In The Nucleotide-Free State Length = 209

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 17  SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 76
           S  E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +ID
Sbjct: 2   SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 77  TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 136
           TP +F +    E + KE+ +C  ++  G H +L          Q+++AA   ++ +FG+ 
Sbjct: 61  TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGED 119
Query: 137 IFDYMIVVF 145
              + IV+F
Sbjct: 120 AMGHTIVLF 128

>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 21-260 Length = 240

Iteration: 1
 Score = 80.1 bits (196), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Query: 20  ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPG 79
           E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +IDTP 
Sbjct: 2   ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPD 60
Query: 80  LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFD 139
           +F +    E + KE+ +C  ++  G H +L          Q+++AA   ++ +FG+    
Sbjct: 61  MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGEDAMG 119
Query: 140 YMIVVF 145
           + IV+F
Sbjct: 120 HTIVLF 125

>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino Acid Residues 1-260 Length = 260

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 17  SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVID 76
           S  E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   +    + ++V +ID
Sbjct: 19  SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 77
Query: 77  TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKK 136
           TP  F +    E + KE+ +C  ++  G H +L          Q+++AA   ++ +FG+ 
Sbjct: 78  TPDXFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA-QRVKEIFGED 136
Query: 137 IFDYMIVVF 145
              + IV+F
Sbjct: 137 AXGHTIVLF 145

>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1 Length = 247

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 21  RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 80
           R ++LVGRTG GKSATGNSILG+R F SR  ++ VT  C    +   D   V V+DTP +
Sbjct: 22  RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTG-SRRWDKCHVEVVDTPDI 80
Query: 81  FDFSAGSEFVG-KEIVKCIGMAKDGIHAVLXXXXXXXXXXQEEEAALHSLQTLFGKKIFD 139
           F         G +E   C  ++  G HA+L          Q+++ A+  ++ +FG+ +  
Sbjct: 81  FSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQ-AVRQVRDMFGEDVLK 139
Query: 140 YMIVVF 145
           +M++VF
Sbjct: 140 WMVIVF 145

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	9e-53
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	7e-52
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	8e-51
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	1e-50
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	1e-47
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	1e-04

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score =  167 bits (425), Expect = 9e-53
 Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 3/160 (1%)

Query: 12  ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV 71
           +L        TV+++G+ G GKS+T NS++G +  +     +       + RT+   G  
Sbjct: 28  KLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFT 85

Query: 72  VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT 131
           +N+IDTPGL +    +    + I   +      +   +    V     + ++  + ++  
Sbjct: 86  INIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVY-AVDELDKQVVIAITQ 144

Query: 132 LFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171
            FGK+I+   ++V T       ++ + E +  +     LK
Sbjct: 145 TFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLK 184

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score =  165 bits (420), Expect = 7e-52
 Identities = 37/170 (21%), Positives = 68/170 (40%), Gaps = 5/170 (2%)

Query: 4   GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR 63
              ++    L        T++++G+ G GKS+T NSI+G R        S       + R
Sbjct: 23  TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR 82

Query: 64  TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSV-RSRFSQEE 122
           +    G  +N+IDTPGL +    ++     I   +      I  +L V  +   R    +
Sbjct: 83  SR--AGFTLNIIDTPGLIEGGYINDMALNIIKSFL--LDKTIDVLLYVDRLDAYRVDNLD 138

Query: 123 EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKV 172
           +    ++   FGK I++  IV  T       +    +++  +     L+V
Sbjct: 139 KLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQV 188

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score =  162 bits (411), Expect = 8e-51
 Identities = 62/157 (39%), Positives = 95/157 (60%), Gaps = 5/157 (3%)

Query: 15  SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNV 74
            P N +  +VLVG+TG GKSATGNSILGR+ F S  ++  +T  CE + +       + V
Sbjct: 24  EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVV 82

Query: 75  IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG 134
           +DTPG+FD    +    KEI++CI +   G HA+L+V  +  R+++EE  A   +  +FG
Sbjct: 83  VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFG 141

Query: 135 KKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171
           ++   +MI++FT  D+L   D  L DYL RE P+ ++
Sbjct: 142 ERARSFMILIFTRKDDLG--DTNLHDYL-REAPEDIQ 175

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score =  162 bits (411), Expect = 1e-50
 Identities = 51/167 (30%), Positives = 89/167 (53%), Gaps = 4/167 (2%)

Query: 5   SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT 64
           S      +    S  E  ++LVG+TG GKSA GNSIL ++AF+S+  S  +T TC   + 
Sbjct: 7   SHWGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQG 66

Query: 65  VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA 124
                + + +IDTP +F +    E + KE+ +C  ++  G H +L+V  +  R++ +++ 
Sbjct: 67  SW-GNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQ 124

Query: 125 ALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLK 171
           A   ++ +FG+    + IV+FT  ++L     +L DY+     K L 
Sbjct: 125 AAQRVKEIFGEDAMGHTIVLFTHKEDLN--GGSLMDYMHDSDNKALS 169

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 59.7 bits (144), Expect = 3e-11
 Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 16/153 (10%)

Query: 5   SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC-EMQR 63
           SAI D   L    +    V + G TG+GKS+  N++ G    +  A+ +GV     E   
Sbjct: 56  SAISD--ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP 113

Query: 64  TVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE 123
               +   V   D PG+   +   +   +++                +    +RF + + 
Sbjct: 114 YKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF--------YEYDFFIIISATRFKKNDI 165

Query: 124 AALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE 156
               ++     K+       V T  D    N+ 
Sbjct: 166 DIAKAISM-MKKEF----YFVRTKVDSDITNEA 193

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 7e-05
 Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 28/178 (15%)

Query: 20  ERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGV----TSTCEMQRTVLKDGQVVNV 74
            + V++ G  G+GK+     +    ++K        +       C    TVL+  Q +  
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVC--LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 75  IDTPGLFDFSAGSEFV------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS 128
              P     S  S  +       +  ++ +  +K   + +LV+ +V++  ++   A   S
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFNLS 265

Query: 129 LQTLF---GKKIFDYMIVVFTGGDELEDN------DETLE---DYLGRECPK-PLKVC 173
            + L     K++ D++    T    L+ +      DE       YL       P +V 
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 22  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV---VNVIDTP 78
            ++ VG TG GKS   +++   +     A+ +      +     L++  V   + ++ T 
Sbjct: 44  NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTV 103

Query: 79  GLFDFSAGSEFVGKEIVKCI 98
           G F      E   K IV+ I
Sbjct: 104 G-FGDQINKEDSYKPIVEFI 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.92
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.9
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.88
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.86
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.85
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.83
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.82
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.81
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.79
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.79
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.78
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.78
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.77
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.77
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.77
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.77
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.75
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.75
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.75
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.75
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.75
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.75
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.75
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.75
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.75
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.75
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.75
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.75
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.74
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.74
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.74
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.74
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.74
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.74
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.74
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.73
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.73
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.73
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.73
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.73
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.73
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.73
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.73
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.73
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.73
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.73
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.73
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.73
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.73
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.72
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.72
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.72
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.72
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.72
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.72
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.72
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.72
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.72
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.72
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.72
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.72
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.71
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.71
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.71
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.71
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.71
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.71
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.71
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.71
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.71
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.71
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.71
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.71
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.71
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.7
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.7
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.7
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.7
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.7
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.7
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.7
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.7
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.7
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.7
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.7
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.7
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.7
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.7
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.7
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.7
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.69
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.69
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.69
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.69
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.69
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.69
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.69
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.68
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.68
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.68
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.68
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.68
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.68
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.68
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.68
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.67
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.67
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.67
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.67
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.67
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.67
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.67
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.67
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.67
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.67
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.67
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.66
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.66
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.66
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.66
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.66
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.66
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.65
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.65
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.65
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.65
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.65
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.65
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.65
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.64
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.64
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.64
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.64
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.64
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.63
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.63
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.63
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.63
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.63
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.63
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.63
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.63
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.63
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.62
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.62
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.62
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.62
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.62
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.61
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.61
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.61
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.61
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.61
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.61
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.61
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.61
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.6
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.6
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.6
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.6
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.6
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.59
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.59
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.58
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.57
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.57
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.57
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.57
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.32
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.55
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.55
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.55
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.55
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.55
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.54
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.54
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.54
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.53
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.53
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.52
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.52
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.52
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.52
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.51
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.5
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.5
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.48
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.47
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.47
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.46
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.45
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.38
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.29
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.28
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.27
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.27
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.26
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.26
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.25
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.24
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.24
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.24
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.23
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.23
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.23
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.22
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.22
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.21
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.21
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.2
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.2
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.2
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.19
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.19
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.19
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.18
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.18
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.17
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.17
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.17
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.16
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.15
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.14
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.13
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.11
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.1
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.1
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.09
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.09
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.06
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.05
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.04
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.04
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	99.04
1g6h_A	257	High-affinity branched-chain amino acid transport	99.02
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.02
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.02
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.02
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.01
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.99
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.99
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.99
2og2_A	359	Putative signal recognition particle receptor; nuc	98.97
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.97
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.97
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.96
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.94
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.93
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.92
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.91
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.88
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.88
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.87
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.86
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.83
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.83
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.83
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.81
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.8
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.8
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.77
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.76
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.76
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.75
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.75
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.74
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.74
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.72
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.71
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	98.69
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.69
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.68
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.67
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.67
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.64
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.63
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.6
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.6
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.6
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.6
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.57
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.49
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.49
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.48
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.45
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.44
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.43
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.42
2xxa_A	433	Signal recognition particle protein; protein trans	98.42
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.38
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.35
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.34
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.32
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.31
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.27
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.27
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.25
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.23
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.23
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.2
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.18
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.17
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.17
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.17
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.17
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.16
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.16
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.16
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.15
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.14
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.13
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.12
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.12
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.1
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.09
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.07
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.07
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.06
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.05
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.03
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.02
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.01
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	98.01
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.0
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.99
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.97
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.97
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	97.96
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.96
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.95
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.93
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.91
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.9
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.89
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.88
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.86
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	97.86
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.85
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.85
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.85
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.82
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.82
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.82
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.8
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.8
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.78
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.76
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.75
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.75
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.72
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.71
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.7
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.68
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.65
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.62
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.62
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.61
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.6
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.6
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.6
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.59
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.59
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.58
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.58
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.57
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	97.57
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.57
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.56
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.56
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.54
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.54
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.53
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.51
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.49
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.48
1e69_A	322	Chromosome segregation SMC protein; structural mai	97.47
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.47
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.46
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.45
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.44
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.42
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.42
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.41
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.4
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.4
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.39
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.38
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.36
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.36
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.35
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.33
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.33
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.32
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.32
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.32
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.31
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.29
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.29
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.29
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.29
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.28
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.25
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.23
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.23
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.22
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.22
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.22
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.22
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.19
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.19
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.18
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.17
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.17
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.17
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.17
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.16
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.16
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.16
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.15
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.15
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.14
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.13
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.13
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.13
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.12
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.11
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.11
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.1
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.09
1via_A	175	Shikimate kinase; structural genomics, transferase	97.09
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.06
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.05
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.04
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.04
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.04
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.04
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.03
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.02
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.02
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.01
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.01
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.01
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.0
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.0
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.99
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.99
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.98
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.97
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.96
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.95
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.94
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.93
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.93
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.92
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.91
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.91
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.91
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.9
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.89
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.88
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.87
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.85
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.85
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.82
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.8
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.8
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.79
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.78
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.76
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.75
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.73
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.73
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.71
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.71
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.69
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.69
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.68
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.68
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.68
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.68
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.67
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.66
3bos_A	242	Putative DNA replication factor; P-loop containing	96.65
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.65
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.63
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.62
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.61
3ice_A	422	Transcription termination factor RHO; transcriptio	96.61
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.59
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.58
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.55
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.53
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.53
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.53
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.52
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.51
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.51
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.49
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.47

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.92  E-value=1.6e-24  Score=157.07  Aligned_cols=143  Identities=41%  Similarity=0.722  Sum_probs=102.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      .....+|+++|++|+|||||+|+|++...+..+....+.|..+......+ .+..+.+|||||+.+...........+.+
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            34458999999999999999999999887655433335566565555666 77899999999999877667777788888


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  163 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~  163 (174)
                      ++..+.+++|++|+|+|++ +++..+..+++.+.+.++.....|+++|+||+|+...  ..+++++.
T Consensus       105 ~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~  168 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLR  168 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------
T ss_pred             HHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHH
Confidence            8888889999999999998 7778888888888888777655799999999999865  34554443

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.88  E-value=1.4e-21  Score=143.16  Aligned_cols=135  Identities=33%  Similarity=0.584  Sum_probs=103.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ..+..+|+++|++|+|||||+|+|++...+.......+.|..+......+ .+..+.+|||||+.++....+...+.+.+
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            34458999999999999999999999875544322222455555555555 67889999999999876666666667777


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEe-CcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT-GGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~t-k~D~~~~  153 (174)
                      .+..+++.+|++++|+|++ .++..+..+++.+.+.++.....|.++++| |+|+...
T Consensus        98 ~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~  154 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG  154 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred             HHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence            7777889999999999999 588888888888888877654467888888 9999754

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.86  E-value=1.7e-20  Score=137.78  Aligned_cols=143  Identities=22%  Similarity=0.314  Sum_probs=105.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+..+|+++|.+|+|||||+|+|++....... ...+.|.........+ .+..+.+|||||+.++....+...+.+.++
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS-PFQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCC-SSCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            34589999999999999999999997743222 2233344444455555 678999999999988655555555545544


Q ss_pred             HHhccCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhcc
Q 030624           98 IGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  164 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~  164 (174)
                      +  ...++|++++|++.+. .++..+..+++.+.+.++.....|+++|+||+|+...+...+++|+++
T Consensus       112 l--~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~  177 (262)
T 3def_A          112 L--VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK  177 (262)
T ss_dssp             T--TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred             H--hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence            4  2457899999988753 577777899999999887766579999999999975555677777754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.85  E-value=3.3e-20  Score=136.75  Aligned_cols=141  Identities=23%  Similarity=0.333  Sum_probs=98.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ...+|+++|.+|+|||||+|+|++....... ...+.|.......... .+..+.+|||||+.++..........+.+++
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            4589999999999999999999987643222 1223333333334444 6778999999999875443333333333322


Q ss_pred             HhccCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624           99 GMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  163 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~  163 (174)
                        ...++|+++||++.+. .++..+..+++.+.+.++...+.|+++|+||+|+..++...+++|++
T Consensus       116 --~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~  179 (270)
T 1h65_A          116 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFS  179 (270)
T ss_dssp             --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHH
T ss_pred             --hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHH
Confidence              2457899999988753 57777788999998887765556999999999987654335666553

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.83  E-value=3.8e-19  Score=132.91  Aligned_cols=127  Identities=21%  Similarity=0.180  Sum_probs=91.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +...|+++|.+|+|||||+|+|++....... ...+.|.........+ .+..+.++||||+.+..   +.+.+.+....
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs-~~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~---~~l~~~~~~~~   80 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPIS-PRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPM---DALGEFMDQEV   80 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCC---SHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeec-CCCCceeEEEEEEEEe-CCcEEEEecCccccchh---hHHHHHHHHHH
Confidence            3468999999999999999999997643221 1122233222222223 67789999999998743   34555667777


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..++..+|++++|+|++++++..+..+++.+.+..   ...|+++|+||+|+...
T Consensus        81 ~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~---~~~p~ilV~NK~Dl~~~  132 (301)
T 1wf3_A           81 YEALADVNAVVWVVDLRHPPTPEDELVARALKPLV---GKVPILLVGNKLDAAKY  132 (301)
T ss_dssp             HHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGT---TTSCEEEEEECGGGCSS
T ss_pred             HHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhc---CCCCEEEEEECcccCCc
Confidence            77889999999999998788877766666665532   12699999999999765

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.82  E-value=2e-19  Score=134.87  Aligned_cols=129  Identities=19%  Similarity=0.298  Sum_probs=92.9

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHH
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKE   93 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~   93 (174)
                      .++.+...|+++|.+|+|||||+|+|++....... ...+.|.......... . +..+.++||||+.++. ........
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s-~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~-~~~~l~~~   81 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIIS-PKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK-KSDVLGHS   81 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC-TTCHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccC-CCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc-cchhHHHH
Confidence            34555679999999999999999999998743221 2233343333333334 5 7789999999998754 23456666


Q ss_pred             HHHHHHhccCCceEEEEEEeCCCCCCHHHHHH-HHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624           94 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus        94 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                      +...+..++..+|++++|+|++++.+..+... ++.+...     ..|+++|+||+|+.
T Consensus        82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~-----~~pvilV~NK~Dl~  135 (308)
T 3iev_A           82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL-----NKPVIVVINKIDKI  135 (308)
T ss_dssp             HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG-----CCCEEEEEECGGGS
T ss_pred             HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc-----CCCEEEEEECccCC
Confidence            77777777788899999999997888777655 5555442     26999999999997

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.81  E-value=6e-19  Score=126.03  Aligned_cols=132  Identities=12%  Similarity=0.170  Sum_probs=88.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHH--HHHHH
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF--VGKEI   94 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~--~~~~~   94 (174)
                      .....+|+++|.+|+|||||+|+|++...........+.|............+..+.+|||||+.+.......  ....+
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            3445899999999999999999999976211111233344444444443224578999999998765333221  11222


Q ss_pred             HHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           95 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..........+|++++|+|++++++..+..+++.+...     ..|+++|+||+|+...
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~-----~~p~i~v~nK~Dl~~~  159 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT-----GKPIHSLLTKCDKLTR  159 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG-----CCCEEEEEECGGGSCH
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEeccccCCh
Confidence            22222235668999999999878887777777666552     2689999999999865

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.79  E-value=8.9e-18  Score=117.43  Aligned_cols=127  Identities=20%  Similarity=0.271  Sum_probs=79.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChH--HHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIV   95 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~--~~~~~~~   95 (174)
                      ....+|+++|++|+|||||+|+|++...........+.|.......  .  +..+.+|||||+.+......  .....+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I--NDELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E--TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E--CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence            3458999999999999999999998752222122233333333222  2  34689999999876543322  1111222


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .........+|++++|+|++++.+..+...++.+...     ..|+++|+||+|+...
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~  149 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-----GIPVIVIATKADKIPK  149 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCG
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCCh
Confidence            2222233566999999999877877776666666542     2699999999999865

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.79  E-value=2.4e-18  Score=118.56  Aligned_cols=126  Identities=21%  Similarity=0.183  Sum_probs=82.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|++|+|||||+|+|++....... ...+.|.......+.+ ++..+.++||||+.+...   ...........
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~   78 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASD---EVERIGIERAW   78 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSS---HHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceee-CCCCceeceeeEEEEE-CCeEEEEEECCCcccchh---HHHHHHHHHHH
Confidence            379999999999999999999987532111 1223333333334444 566789999999976421   11111111112


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ..+..+|++++|+|++++.+.....+++.+.+....  ..|+++|+||+|+..
T Consensus        79 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~  129 (172)
T 2gj8_A           79 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPITVVRNKADITG  129 (172)
T ss_dssp             HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCEEEEEECHHHHC
T ss_pred             HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhccc--CCCEEEEEECccCCc
Confidence            245678999999999866655556666666654322  268999999999854

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.78  E-value=4.7e-18  Score=115.14  Aligned_cols=122  Identities=25%  Similarity=0.268  Sum_probs=83.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      ++|+++|++|+|||||+|++++....... ...+.+.........+ .+..+.++||||......    ....+...+..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~   75 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVA-DVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDK----WEKKIQEKVDR   75 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeecc-CCCCceecceEEEEEe-CCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence            68999999999999999999987632111 2223333344444444 567899999999987432    22334444455


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+..+|++++|+|.+++++..+..+.+.+...   .  .|+++|+||+|+...
T Consensus        76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~--~p~ilv~nK~Dl~~~  123 (161)
T 2dyk_A           76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK---G--KPVILVATKVDDPKH  123 (161)
T ss_dssp             HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH---T--CCEEEEEECCCSGGG
T ss_pred             HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc---C--CCEEEEEECcccccc
Confidence            67788999999999877777766666655552   2  689999999999754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.78  E-value=2.7e-18  Score=134.53  Aligned_cols=123  Identities=22%  Similarity=0.282  Sum_probs=85.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      ++|+++|.+|+|||||+|.|++....... ...+.|.........+ .+..+.+|||||+....  .+.....+...+..
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~-~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~   77 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN   77 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceec-CCCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence            57999999999999999999987643222 3345566555666666 77889999999988531  12223445666666


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ++..+|++++|+|++++++..+..+.++++..     ..|+++|+||+|+.+
T Consensus        78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~~  124 (439)
T 1mky_A           78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-----TVDTILVANKAENLR  124 (439)
T ss_dssp             HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-----TCCEEEEEESCCSHH
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCcc
Confidence            78889999999999878888887776666553     268999999999853

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.77  E-value=8.5e-18  Score=116.78  Aligned_cols=118  Identities=14%  Similarity=0.108  Sum_probs=80.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+..+|+++|++|+|||||+|++++.. ...    ..+|.........+ ++..+.++||||..+           +...
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~----~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~   78 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDT----ISPTLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSY   78 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSS----CCCCSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCc----ccccCccceEEEEE-CCEEEEEEECCCCHh-----------HHHH
Confidence            345899999999999999999999876 211    22233333444555 678899999999854           4445


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +...+..+|++++|+|.+++.+... ..++..+..... ....|+++|+||+|+...
T Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~  134 (186)
T 1ksh_A           79 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPGA  134 (186)
T ss_dssp             GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCCC
Confidence            5667889999999999985543333 233333332211 123699999999999765

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.77  E-value=2.3e-18  Score=118.63  Aligned_cols=125  Identities=17%  Similarity=0.253  Sum_probs=83.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +..+|+++|++|+|||||+|++++.......  ....+.........+ .+..+.++||||..+....           .
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~-----------~   72 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQE--AGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTM-----------R   72 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTCSSCSS--CCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCS-----------C
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCccccCC--CCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHH-----------H
Confidence            3479999999999999999999987643221  122222223333444 6678899999998764321           2


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHh
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL  162 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~  162 (174)
                      ...+..+|++++|+|.+++......+.+..+.   ...  .|+++|+||+|+.......+.+.+
T Consensus        73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~---~~~--~p~ilv~nK~Dl~~~~~~~~~~~~  131 (178)
T 2lkc_A           73 ARGAQVTDIVILVVAADDGVMPQTVEAINHAK---AAN--VPIIVAINKMDKPEANPDRVMQEL  131 (178)
T ss_dssp             CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHG---GGS--CCEEEEEETTTSSCSCHHHHHHHH
T ss_pred             HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHH---hCC--CCEEEEEECccCCcCCHHHHHHHH
Confidence            24567889999999998666666555544332   222  689999999999875333444444

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.77  E-value=5.3e-17  Score=113.23  Aligned_cols=126  Identities=17%  Similarity=0.173  Sum_probs=83.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChH--HHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIV   95 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~--~~~~~~~   95 (174)
                      ....+|+++|++|+|||||+|++++...... ....+.|.......    .+..+.++||||+........  .....+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFV-SKTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWKRLV   95 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC-CSSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccccc-cCCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHHHHH
Confidence            3457999999999999999999999863222 12223333322211    345688999999876433221  1122233


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .........+|++++|+|+++.........++++...     ..|+++|+||+|+...
T Consensus        96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~  148 (195)
T 3pqc_A           96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKM  148 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCG
T ss_pred             HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCCh
Confidence            3333344677999999999877777777766666654     2699999999999764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.77  E-value=3.7e-18  Score=116.69  Aligned_cols=118  Identities=14%  Similarity=0.138  Sum_probs=75.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+|+++|++|+|||||+|++++........  ...+.......... ++  ..+.++||||..+           +...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~   71 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHI--TTLGASFLTKKLNI-GGKRVNLAIWDTAGQER-----------FHAL   71 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCC--CCCSCEEEEEEEES-SSCEEEEEEEECCCC-----------------
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCcCCC--CccceEEEEEEEEE-CCEEEEEEEEECCCcHh-----------hhhh
Confidence            4799999999999999999999765432211  11222222222333 22  3678999999765           3334


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...++..+|++++|+|.++..+... ..+++.+.......  .|+++|+||+|+...
T Consensus        72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~  126 (170)
T 1z08_A           72 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKE  126 (170)
T ss_dssp             -CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGG
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccc
Confidence            4556788999999999985433222 45555665554333  689999999999753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.75  E-value=5.2e-18  Score=117.12  Aligned_cols=121  Identities=22%  Similarity=0.196  Sum_probs=77.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ....+|+++|++|+|||||+|++++...........+.+  .......+.. ...+.++||||...           +..
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~   76 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAA--FFSQTLAVNDATVKFEIWDTAGQER-----------YHS   76 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCS--EEEEEEEETTEEEEEEEEECCCSGG-----------GGG
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeE--EEEEEEEECCEEEEEEEEeCCCChh-----------hhh
Confidence            334789999999999999999999876432221122222  2222233311 24789999999765           222


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+..+|++++|+|++++.+... ..++..+......  ..|+++|+||+|+...
T Consensus        77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~  132 (181)
T 2efe_B           77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVMALAGNKSDLLDA  132 (181)
T ss_dssp             GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTT
T ss_pred             hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCccccc
Confidence            23345677899999999985433222 4555555554322  2689999999999754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.75  E-value=2.7e-18  Score=118.19  Aligned_cols=120  Identities=16%  Similarity=0.167  Sum_probs=76.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ...+|+++|.+|+|||||+|.+++...........+.+.  ........ ....+.++||||..+.           ...
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~~~   80 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEF--GTRIIEVSGQKIKLQIWDTAGQERF-----------RAV   80 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCE--EEEEEEETTEEEEEEEEECTTGGGT-----------CHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE--EEEEEEECCeEEEEEEEECCCChHh-----------hhh
Confidence            358999999999999999999998764322111112122  22222231 1246899999997652           222


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+..+|++++|+|+++..+... ..++..+......  ..|+++|+||+|+...
T Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~  135 (179)
T 1z0f_A           81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQ  135 (179)
T ss_dssp             HHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG
T ss_pred             HHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccc
Confidence            3334556799999999985433222 4555555554322  2689999999999653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.75  E-value=5.8e-18  Score=116.72  Aligned_cols=120  Identities=21%  Similarity=0.202  Sum_probs=79.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI   94 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~   94 (174)
                      .....+|+++|++|+|||||+|+|++......  .....+.........+ .+  ..+.++||||.....          
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~----------   72 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFR----------   72 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---C--CTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCS----------
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCc--cCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhh----------
Confidence            34458999999999999999999998764322  2233344444444444 44  468999999966532          


Q ss_pred             HHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                       ......+..+|++++|+|++++.+... ..++..+....   ...|+++|+||+|+...
T Consensus        73 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~  128 (181)
T 3tw8_B           73 -TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPER  128 (181)
T ss_dssp             -SCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGGG
T ss_pred             -hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCchh
Confidence             223346778899999999985432222 33444444432   23689999999998654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.75  E-value=3.2e-18  Score=116.87  Aligned_cols=120  Identities=17%  Similarity=0.110  Sum_probs=77.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      +..+|+++|++|+|||||+|++++...........+.+  .......+. ....+.++||||+.+           +...
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Dt~G~~~-----------~~~~   71 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGAS--FMTKTVQYQNELHKFLIWDTAGLER-----------FRAL   71 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEE--EEEEEEEETTEEEEEEEEEECCSGG-----------GGGG
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEE--EEEEEEEECCeEEEEEEEcCCCchh-----------hhcc
Confidence            34799999999999999999999876432211122222  222223331 124688999999864           2223


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+..+|++++|+|.+++.+... ..+++.+.......  .|+++|.||+|+...
T Consensus        72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~  126 (170)
T 1z0j_A           72 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDV  126 (170)
T ss_dssp             THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGG
T ss_pred             cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCccccc
Confidence            3345677899999999985433333 45556665542222  589999999999753

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.75  E-value=2e-17  Score=114.70  Aligned_cols=119  Identities=16%  Similarity=0.145  Sum_probs=79.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      ....+|+++|++|+|||||+|.+++......  .....+.......... .+  ..+.++||||..+           +.
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~   73 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDD--SNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQER-----------FR   73 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HH
Confidence            3458999999999999999999997664322  1122222222333333 33  4789999999765           34


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ..+...+..+|++++|+|.+++.+... ..++..+......  ..|+++|+||+|+..
T Consensus        74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~  129 (186)
T 2bme_A           74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDA  129 (186)
T ss_dssp             HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred             HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccc
Confidence            455667889999999999985332222 3455555554322  368999999999964

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.75  E-value=3.6e-18  Score=119.49  Aligned_cols=119  Identities=18%  Similarity=0.116  Sum_probs=76.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      +..+|+++|++|+|||||+|++++...........+.+..  ....... ....+.++||||..+.           ...
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~   88 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFM--TKTVPCGNELHKFLIWDTAGQERF-----------HSL   88 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEE--EEEEECSSSEEEEEEEEECCSGGG-----------GGG
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEE--EEEEEeCCEEEEEEEEcCCCchhh-----------Hhh
Confidence            3479999999999999999999987643221122222222  2222221 2347899999997652           222


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ....+..+|++++|+|.++..+... ..++..+.+....  ..|+++|+||+|+..
T Consensus        89 ~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~  142 (192)
T 2fg5_A           89 APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE--NIVMAIAGNKCDLSD  142 (192)
T ss_dssp             THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred             hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECccccc
Confidence            3345667899999999985433232 4555555554322  269999999999974

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.75  E-value=2.9e-18  Score=117.04  Aligned_cols=118  Identities=19%  Similarity=0.170  Sum_probs=76.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+|+++|++|+|||||+|++++........  ...+.......... .+  ..+.++||||..+           +...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~-----------~~~~   68 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKE--PTIGAAFLTQRVTI-NEHTVKFEIWDTAGQER-----------FASL   68 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--CCSSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GGGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEE-CCEEEEEEEEECCCChh-----------hhhh
Confidence            4789999999999999999999876432211  12222222223333 32  3689999999764           2222


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+..+|++++|+|++++.+... ..++..+.......  .|+++|+||+|+...
T Consensus        69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~  123 (170)
T 1ek0_A           69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDXLQE  123 (170)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGS
T ss_pred             hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccc
Confidence            3345577899999999985433322 34555555543222  689999999999754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.75  E-value=1.4e-17  Score=113.85  Aligned_cols=116  Identities=16%  Similarity=0.081  Sum_probs=79.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|++|+|||||+|++++.....     ..+|.........+ +...+.++||||...           +...+.
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~~~   69 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVGEVVT-----TIPTIGFNVETVTY-KNLKFQVWDLGGLTS-----------IRPYWR   69 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEEEEE-TTEEEEEEEECCCGG-----------GGGGGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCC-----cCCcCccceEEEEE-CCEEEEEEECCCChh-----------hhHHHH
Confidence            4899999999999999999998765321     12233334444555 678899999999875           333345


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+...
T Consensus        70 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~  123 (171)
T 1upt_A           70 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQA  123 (171)
T ss_dssp             GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcCC
Confidence            57788999999999985543333 233332222111 123699999999999765

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.75  E-value=3.8e-18  Score=116.43  Aligned_cols=119  Identities=18%  Similarity=0.152  Sum_probs=75.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ..+|+++|++|+|||||+|++++..........  .+........... ....+.++||||..+           +....
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-----------~~~~~   72 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQEST--IGAAFLTQTVCLDDTTVKFEIWDTAGQER-----------YHSLA   72 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC--SSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GGGGH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc--cceEEEEEEEEECCEEEEEEEEeCCCcHH-----------hhhhh
Confidence            478999999999999999999976543221111  2222222223331 134689999999765           22223


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|.+++.+... ..++..+.......  .|+++|.||+|+...
T Consensus        73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~Dl~~~  126 (170)
T 1r2q_A           73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANK  126 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG
T ss_pred             HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccc
Confidence            345677899999999985432222 34444454432222  588999999998653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.75  E-value=1.3e-17  Score=117.51  Aligned_cols=119  Identities=11%  Similarity=0.058  Sum_probs=77.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ..+|+++|++|+|||||+|.+++...........  +........... ....+.+|||||...           +...+
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~~   74 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV--GIDFKVKTIYRNDKRIKLQIWDTAGLER-----------YRTIT   74 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCC--SEEEEEEEEEETTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc--ceeEEEEEEEECCeEEEEEEEECCCchh-----------hcchH
Confidence            4799999999999999999999876432211111  222222233331 134789999999865           33445


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+...
T Consensus        75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~  128 (203)
T 1zbd_A           75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMEDE  128 (203)
T ss_dssp             HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--SSCEEEEEEECTTCTTS
T ss_pred             HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCcc
Confidence            566778899999999985432222 345555544321  23689999999999764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.75  E-value=1.7e-17  Score=116.05  Aligned_cols=121  Identities=20%  Similarity=0.213  Sum_probs=80.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      ....+|+++|++|+|||||+|+|++......  .....+.........+ .+  ..+.++||||.....           
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------   79 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFR-----------   79 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSC--CCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGC-----------
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhh-----------
Confidence            3457999999999999999999998664322  2233333344444444 33  468999999976522           


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      .....++..+|++++|+|++++.+... ..++..+.......  .|+++|+||+|+....
T Consensus        80 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~~  137 (196)
T 3tkl_A           80 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTKK  137 (196)
T ss_dssp             TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTC
T ss_pred             hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccccccc
Confidence            222345577899999999985332222 45555565543323  6899999999997653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.75  E-value=3e-17  Score=113.16  Aligned_cols=120  Identities=18%  Similarity=0.151  Sum_probs=75.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      +..+|+++|++|+|||||+|++++....... .....+.......... .+  ..+.++||||...           +..
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~-----------~~~   75 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT-FISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQER-----------FRS   75 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCC-CCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC----------------
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCCC-cCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence            3479999999999999999999987643211 1122222222222233 33  3689999999765           333


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+...+..+|++++|+|++++.+... ..++..+......  ..|+++|+||+|+...
T Consensus        76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~  131 (180)
T 2g6b_A           76 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDSAHE  131 (180)
T ss_dssp             ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECCSTTSC
T ss_pred             HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccCcc
Confidence            44556778899999999985433222 4555555554322  2699999999999764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.74  E-value=7.5e-17  Score=115.80  Aligned_cols=131  Identities=16%  Similarity=0.106  Sum_probs=78.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ....+|+++|.+|+|||||+|+|++.... .. .....|.........+ ....+.+|||||+.+.........  ....
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~-~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~--~~~~  101 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQ-SYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTI--EMTT  101 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EE-CC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHH--HHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cC-CCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhH--HHHH
Confidence            34589999999999999999999987643 21 1223344444444444 567899999999975321111000  0111


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +......+|++++|+|++++.+.....+...+..........|+++|+||+|+...
T Consensus       102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~  157 (228)
T 2qu8_A          102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM  157 (228)
T ss_dssp             HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred             HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence            22234667999999999865443323333333333222113699999999999764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.74  E-value=1.4e-17  Score=124.48  Aligned_cols=123  Identities=19%  Similarity=0.227  Sum_probs=83.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCC-CCCCChHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFVGKEIVKC   97 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~-~~~~~~~~~~~~~~~~   97 (174)
                      +...++++|++|+|||||+|+|++....... ...+.|.........+ .+..+.++||||+. ..   .....+.+...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s-~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~---~~~l~~~~~~~   81 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITS-RKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEE---KRAINRLMNKA   81 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECC-CCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHH---HHHHHHHHTCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccC-CCCCcceeeEEEEEEE-CCeeEEEEECcCCCccc---hhhHHHHHHHH
Confidence            4478999999999999999999998643221 1122333222222333 66789999999987 21   12233344444


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      +..++..+|++++|+|+++ ++..+...++.+..     ...|+++++||+|+..
T Consensus        82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~  130 (301)
T 1ega_A           82 ASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQ  130 (301)
T ss_dssp             TTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCC
T ss_pred             HHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCc
Confidence            5567788999999999985 88777655554432     1269999999999976

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.74  E-value=4.3e-17  Score=120.30  Aligned_cols=130  Identities=20%  Similarity=0.266  Sum_probs=79.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccC----CCCcceeeEEEEEEEe-CC--cEEEEEeCCCCCCCCCCh---
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS----SSGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGS---   87 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~----~~~~t~~~~~~~~~~~-~~--~~~~~iDtpG~~~~~~~~---   87 (174)
                      +...+|+++|.+|+|||||+|+|++...+.....    ....|........... ++  ..+.++||||+.++....   
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            4458999999999999999999998776543210    0022222222323221 22  378999999997654322   


Q ss_pred             HHHH----HHHHHHHHh---------ccCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           88 EFVG----KEIVKCIGM---------AKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        88 ~~~~----~~~~~~~~~---------~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+.    .++...+..         ...++|+++++++.. .++...+..+++.+..      ..|+++|+||+|+...
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~  159 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTP  159 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCH
Confidence            2222    122222221         124578999999665 3678888887776655      2699999999999865

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.74  E-value=9.7e-18  Score=118.42  Aligned_cols=119  Identities=18%  Similarity=0.190  Sum_probs=78.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ...+|+++|++|+|||||+|+|++.......  ....+.......+.+ .+  ..+.++||||..+...           
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~-----------   72 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDY--ISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRT-----------   72 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTC--CCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTC-----------
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHH-----------
Confidence            3479999999999999999999987643221  122222222333333 33  3689999999876322           


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+..+|++++|+|.+++.+... ..++..+......  ..|+++|+||+|+...
T Consensus        73 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~  128 (206)
T 2bcg_Y           73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDK  128 (206)
T ss_dssp             CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTT
T ss_pred             HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccc
Confidence            23346778899999999985433332 3455555554322  2689999999999764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.74  E-value=3.7e-17  Score=114.52  Aligned_cols=124  Identities=14%  Similarity=0.072  Sum_probs=80.8

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI   94 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~   94 (174)
                      .+.....+|+++|.+|+|||||++.+++.......   ...|.......+.. ....+.+|||||...           +
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~   76 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKH---ITATVGYNVETFEK-GRVAFTVFDMGGAKK-----------F   76 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----C---CCCCSSEEEEEEEE-TTEEEEEEEECCSGG-----------G
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccc---cccccceeEEEEEe-CCEEEEEEECCCCHh-----------H
Confidence            34445689999999999999999999987743311   12233333344444 678899999999875           3


Q ss_pred             HHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhh------hcCcEEEEEeCcCCCCC
Q 030624           95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK------IFDYMIVVFTGGDELED  153 (174)
Q Consensus        95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~------~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..++..+|++++|+|+++.-+... ..++..+.......      ...|+++|+||+|+...
T Consensus        77 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  142 (199)
T 4bas_A           77 RGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA  142 (199)
T ss_dssp             GGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred             HHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence            3444567789999999999985543333 34444333321110      13699999999999865

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.74  E-value=5.4e-17  Score=110.28  Aligned_cols=114  Identities=13%  Similarity=0.046  Sum_probs=76.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      +|+++|++|+|||||+|++++......     .+|.........+ .+..+.++||||..+           +.......
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~~   64 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRHY   64 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEEC-SSCEEEEEECCCCGG-----------GHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEEE-CCEEEEEEEcCCChh-----------hHHHHHHH
Confidence            789999999999999999987653211     1232233334444 667899999999865           33444556


Q ss_pred             cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          102 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +..+|++++|+|.+++-+... ..++..+.... .....|+++|+||+|+...
T Consensus        65 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~  116 (164)
T 1r8s_A           65 FQNTQGLIFVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPNA  116 (164)
T ss_dssp             TTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTC
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhcCCeEEEEEECcCCcCC
Confidence            788999999999985433222 23333332211 1123699999999999764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.74  E-value=5.6e-18  Score=118.56  Aligned_cols=120  Identities=13%  Similarity=0.189  Sum_probs=75.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      ....+|+++|.+|+|||||+|+|++......  .....+.........+ ++  ..+.++||||...           +.
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~   89 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEA--CKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQER-----------FN   89 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcC--CCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHH-----------HH
Confidence            3457899999999999999999998764322  1222233333334444 33  3689999999764           22


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ......+..+|++++|+|.++..+... ..+++.+.......  .|+++|+||+|+...
T Consensus        90 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~~  146 (192)
T 2il1_A           90 SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETD  146 (192)
T ss_dssp             HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG
T ss_pred             HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccc
Confidence            223334456699999999985433333 44555555543222  689999999998653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.73  E-value=1.1e-17  Score=116.58  Aligned_cols=119  Identities=13%  Similarity=0.084  Sum_probs=77.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ..+|+++|++|+|||||+|++++...........  +........... ....+.++||||......           ..
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~~   88 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV--GIDFKVKTVYRHDKRIKLQIWDTAGQERYRT-----------IT   88 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC--CCEEEEEEEEETTEEEEEEEEECCSCCSSCC-----------SG
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCce--eEEEEEEEEEECCeEEEEEEEeCCCcHHHhh-----------hH
Confidence            4799999999999999999999876432211112  222222222221 134689999999876322           23


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|.+++.+... ..++..+......  ..|+++|+||+|+...
T Consensus        89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~  142 (189)
T 2gf9_A           89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD--NAQVILVGNKCDLEDE  142 (189)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG
T ss_pred             HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccc
Confidence            456778899999999985332222 3455555554212  2699999999999753

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.73  E-value=5.3e-18  Score=118.56  Aligned_cols=120  Identities=18%  Similarity=0.160  Sum_probs=75.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ...+|+++|++|+|||||+|+|++...........+  ........... ....+.++||||..+..           ..
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~   90 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG--VEFSTRTVMLGTAAVKAQIWDTAGLERYR-----------AI   90 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSS--EEEEEEEEEETTEEEEEEEEEESCCCTTC-----------TT
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEEEEEECCEEEEEEEEeCCCchhhh-----------hh
Confidence            347899999999999999999998764322111112  11122222221 23467899999987632           12


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+..+|++++|+|++++.+... ..++..+.....  ...|+++|+||+|+...
T Consensus        91 ~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~  145 (193)
T 2oil_A           91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE--ATIVVMLVGNKSDLSQA  145 (193)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC--TTCEEEEEEECGGGGGG
T ss_pred             hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECCCcccc
Confidence            2334567899999999985332222 344444443321  23689999999999753

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.73  E-value=4.4e-18  Score=133.21  Aligned_cols=123  Identities=23%  Similarity=0.186  Sum_probs=78.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+|+++|.+|+|||||+|.|++...... ....+.|.........+ .+..+.+|||||+....   ......+...+..
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~   78 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAEI   78 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEE-CCceEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence            6899999999999999999998754222 22344555544444445 56789999999997432   1244556666666


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ++..+|++++|+|+.++++..+..+.+.++.     ...|+++|+||+|+...
T Consensus        79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~  126 (436)
T 2hjg_A           79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEM  126 (436)
T ss_dssp             HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC---
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCccc
Confidence            7778899999999988888887766655543     12699999999998754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.73  E-value=6.8e-18  Score=132.12  Aligned_cols=129  Identities=19%  Similarity=0.176  Sum_probs=82.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ...+++++|.+|+|||||+|+|++....... ...+.|.......+.+ ++..+.+|||||+.+.....+...+......
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~-~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeec-CCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence            3489999999999999999999987643222 2233444444444555 6778999999998653321111111000001


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ..++..+|++++|+|++++.+..+..++..+.+.   .  .++++|+||+|+....
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~---~--~~iiiv~NK~Dl~~~~  302 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA---G--KAVVIVVNKWDAVDKD  302 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CEEEEEEECGGGSCCC
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc---C--CcEEEEEECccCCCcc
Confidence            1234456999999999988888887776665542   2  6899999999998754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.73  E-value=2.8e-18  Score=135.03  Aligned_cols=125  Identities=23%  Similarity=0.202  Sum_probs=81.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ..++|+++|.+|+|||||+|+|++...... ....+.|.........+ .+..+.+|||||+...   .+....++...+
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~~~~~   96 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIG---DEPFLAQIRQQA   96 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEE-CCceEEEEECCCCCCc---chHHHHHHHHHH
Confidence            347899999999999999999999764322 23344555555555545 5678999999998742   223345566666


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..++..+|++|+|+|..++++..+..+.+.+++.     ..|+++|+||+|+...
T Consensus        97 ~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~-----~~pvilV~NK~D~~~~  146 (456)
T 4dcu_A           97 EIAMDEADVIIFMVNGREGVTAADEEVAKILYRT-----KKPVVLAVNKLDNTEM  146 (456)
T ss_dssp             HHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC-----CSCEEEEEECC-----
T ss_pred             HhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHc-----CCCEEEEEECccchhh
Confidence            6677788999999999878988888777766542     2699999999998653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.73  E-value=4e-17  Score=112.26  Aligned_cols=120  Identities=18%  Similarity=0.070  Sum_probs=78.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ...+|+++|++|+|||||+|++++.......  ....+.........+ ++  ..+.++||||...           +..
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~   71 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FRS   71 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeeEEEEEEEE-CCEEEEEEEEeCCCchh-----------hhh
Confidence            3578999999999999999999976532221  111222222233333 33  3789999999765           344


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh--hhcCcEEEEEeCcCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE  152 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~~iv~tk~D~~~  152 (174)
                      .....+..+|++++|+|.++..+... ..+++.+......  ....|+++|+||+|+..
T Consensus        72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~  130 (177)
T 1wms_A           72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE  130 (177)
T ss_dssp             HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred             hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence            55567888999999999985433222 4555666554431  02258999999999874

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.73  E-value=5.9e-18  Score=116.49  Aligned_cols=119  Identities=14%  Similarity=0.126  Sum_probs=76.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      +..+|+++|++|+|||||+|++++......  .....+.........+ .+  ..+.++||||....           ..
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~-----------~~   78 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERF-----------RS   78 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------GG
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHH-----------HH
Confidence            447899999999999999999997653222  1222222333333333 33  36899999997652           12


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+...+..+|++++|+|++++.+... ..++..+.......  .|+++|+||+|+...
T Consensus        79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~  134 (179)
T 2y8e_A           79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDK  134 (179)
T ss_dssp             GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGGG
T ss_pred             HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCccccc
Confidence            22234456799999999984332222 45555555543323  689999999998754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.73  E-value=6.4e-18  Score=118.84  Aligned_cols=117  Identities=19%  Similarity=0.182  Sum_probs=71.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      +..+|+++|++|+|||||+|++++...........+.+.  ......+ ++  ..+.++||||..+.           ..
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~   92 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDF--QMKTLIV-DGERTVLQLWDTAGQERF-----------RS   92 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCCCC----------C--EEEEEEE-TTEEEEEEEEECTTCTTC-----------HH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCcccee--EEEEEEE-CCEEEEEEEEECCCCcch-----------hh
Confidence            358999999999999999999998653222111111111  1222223 32  45899999997752           22


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                      .....+..+|++++|+|++++.+... ..+++.+.......  .|+++|+||+|+.
T Consensus        93 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~  146 (199)
T 2p5s_A           93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIR  146 (199)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred             hHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccc
Confidence            22333445699999999985433332 45555555543222  6999999999986

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.73  E-value=2e-17  Score=114.15  Aligned_cols=122  Identities=13%  Similarity=0.090  Sum_probs=72.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe--CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      ....+|+++|++|+|||||+|.+++.......  ....+.........+.  ....+.++||||...           +.
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~   72 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQY--KATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQ   72 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEECCSSSCCEEEEEECCC-----------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCccc--CCccceEEEEEEEEEcCCcEEEEEEEECCCChH-----------hh
Confidence            34589999999999999999999986533221  1111122222233331  134689999999665           33


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh--hhcCcEEEEEeCcCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE  152 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~~iv~tk~D~~~  152 (174)
                      ......+..+|++++|+|.+++.+... ..++..+......  ....|+++|+||+|+..
T Consensus        73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  132 (182)
T 1ky3_A           73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE  132 (182)
T ss_dssp             ----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred             hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence            444567788999999999985432222 4555555554321  12369999999999854

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.73  E-value=1.4e-17  Score=116.12  Aligned_cols=120  Identities=15%  Similarity=0.103  Sum_probs=77.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHH-
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV-   95 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~-   95 (174)
                      +..+|+++|.+|+|||||+|++++.......  ....+.........+ ++  ..+.++||||..+           +. 
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~   84 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT--EATIGVDFRERAVDI-DGERIKIQLWDTAGQER-----------FRK   84 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC--CCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHH-----------HHT
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCCcceEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhh
Confidence            4589999999999999999999976543221  122222222233333 33  4789999999653           22 


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....++..+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+...
T Consensus        85 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~  142 (189)
T 1z06_A           85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSA  142 (189)
T ss_dssp             TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGG
T ss_pred             hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence            233445678899999999985332222 445555555431 123689999999999653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.73  E-value=6.4e-17  Score=109.98  Aligned_cols=119  Identities=19%  Similarity=0.173  Sum_probs=73.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      +..+|+++|++|+|||||+|++++.......   .+.+.......... .+  ..+.++||||..+.           ..
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~-----------~~   67 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDY---EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY-----------AA   67 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCC---C-----------HH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCC---CCCcceEEEEEEEE-CCEEEEEEEEECCCcchh-----------HH
Confidence            4589999999999999999999986632221   11111111222233 33  36889999997652           22


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....++..+|++++|+|.++.-+... ..++..+...... ...|+++|+||+|+...
T Consensus        68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~  124 (168)
T 1u8z_A           68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK  124 (168)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGG
T ss_pred             HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECcccccc
Confidence            22333445699999999984432222 4555555554321 13699999999998653

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.73  E-value=2.7e-17  Score=114.53  Aligned_cols=119  Identities=13%  Similarity=0.009  Sum_probs=77.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEEeC-----------CcEEEEEeCCCCCCCCCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKD-----------GQVVNVIDTPGLFDFSAG   86 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~-----------~~~~~~iDtpG~~~~~~~   86 (174)
                      ...+|+++|++|+|||||+|++++........  ........ ...... .           ...+.++||||...    
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~----   82 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFI--TTVGIDFREKRVVYR-ANGPDGAVGRGQRIHLQLWDTAGLER----   82 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--CCCSEEEEEEEEEEC-TTSCCCSSCCCEEEEEEEEEECCSGG----
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcc--cccceeeeeEEEEEe-cCCcccccccCcEEEEEEEeCCCcHH----
Confidence            35899999999999999999999765322211  11111111 122222 2           23789999999865    


Q ss_pred             hHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           87 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                             +.......+..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+..
T Consensus        83 -------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~  141 (195)
T 3bc1_A           83 -------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLED  141 (195)
T ss_dssp             -------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCEEEEEECTTCGG
T ss_pred             -------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence                   34445567788999999999985433332 4555555543221 2368999999999975

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.73  E-value=4.8e-17  Score=113.42  Aligned_cols=120  Identities=14%  Similarity=0.051  Sum_probs=79.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +..+|+++|.+|+|||||+|++++...+...   ...|.......+.+ ++..+.++||||..+.           ...+
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~   84 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKFKS-SSLSFTVFDMSGQGRY-----------RNLW   84 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEEEC-SSCEEEEEEECCSTTT-----------GGGG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEEEE-CCEEEEEEECCCCHHH-----------HHHH
Confidence            4589999999999999999999987632221   22333344444555 5688999999998762           2333


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh-hhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|+...
T Consensus        85 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  141 (190)
T 2h57_A           85 EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA  141 (190)
T ss_dssp             GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence            456678899999999985322222 2333333332111 023699999999999764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.73  E-value=7.6e-17  Score=112.68  Aligned_cols=125  Identities=10%  Similarity=0.014  Sum_probs=77.7

Q ss_pred             ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh
Q 030624            8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS   87 (174)
Q Consensus         8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~   87 (174)
                      .+++++..+.   .+|+++|++|+|||||++.+++.....     ...|.......+.+ ++..+.++||||....    
T Consensus        14 l~~~~~~~~~---~ki~~vG~~~vGKSsli~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~----   80 (190)
T 1m2o_B           14 LASLGLWNKH---GKLLFLGLDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSEELAI-GNIKFTTFDLGGHIQA----   80 (190)
T ss_dssp             -------------CEEEEEESTTSSHHHHHHHHHHSCCCC-----CCCCCSCEEEEEEE-TTEEEEEEECCCSGGG----
T ss_pred             HHHhhccCCc---cEEEEECCCCCCHHHHHHHHhcCCCCc-----cccCCCCCeEEEEE-CCEEEEEEECCCCHHH----
Confidence            3444444433   689999999999999999999865321     11222223344445 6688999999998762    


Q ss_pred             HHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           88 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                             ......++..+|++++|+|.+++-+... ..++..+.+... ....|+++|.||+|+...
T Consensus        81 -------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~  139 (190)
T 1m2o_B           81 -------RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE-LKDVPFVILGNKIDAPNA  139 (190)
T ss_dssp             -------TTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTC
T ss_pred             -------HHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchh-hcCCCEEEEEECCCCcCC
Confidence                   2233456778999999999985543333 334433333211 123699999999999763

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.72  E-value=6.2e-17  Score=112.81  Aligned_cols=117  Identities=17%  Similarity=0.073  Sum_probs=77.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|++|+|||||+|.+++......    ...|.......... ....+.++||||..+           +...+.
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~   85 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASGQFNED----MIPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSMWE   85 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcCCCCCc----cCCCCceeEEEEEe-CCEEEEEEECCCCHh-----------HHHHHH
Confidence            47899999999999999999997654311    12233333334444 677899999999764           333344


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+..+|++++|+|+++.-+... ..++..+..... ....|+++|+||+|+...
T Consensus        86 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~  139 (188)
T 1zd9_A           86 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPGA  139 (188)
T ss_dssp             HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTC
T ss_pred             HHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCccC
Confidence            45678899999999985433222 233333322111 123689999999999765

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.72  E-value=2.8e-17  Score=112.27  Aligned_cols=119  Identities=23%  Similarity=0.193  Sum_probs=73.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+|+++|++|+|||||+|++++...........+.+.   ...... ..  ..+.++||||..+.           ...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~~~Dt~G~~~~-----------~~~   67 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY---RQVISC-DKSICTLQITDTTGSHQF-----------PAM   67 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE---EEEEEE-TTEEEEEEEEECCSCSSC-----------HHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE---EEEEEE-CCEEEEEEEEECCCchhh-----------HHH
Confidence            47899999999999999999998654322111111111   111222 22  35799999998762           122


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+..+|++++|+|.+++.+... ..++..+.+........|+++|+||+|+...
T Consensus        68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~  124 (172)
T 2erx_A           68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS  124 (172)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred             HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc
Confidence            2223345699999999984432222 4555555554332223689999999998653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.72  E-value=2.8e-17  Score=116.02  Aligned_cols=117  Identities=15%  Similarity=0.130  Sum_probs=79.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+|+++|++|+|||||+|++++......  .....+.......+.+ ++  ..+.++||||...           +...
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~~   91 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRSI   91 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHH
Confidence            47999999999999999999987653211  1122222222333334 33  3689999999764           4445


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ...++..+|++++|+|.+++.+... ..++..+.......  .|+++|+||+|+..
T Consensus        92 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~  145 (201)
T 2ew1_A           92 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAE  145 (201)
T ss_dssp             HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcc
Confidence            5667889999999999985432222 45666565543222  68999999999974

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.72  E-value=3e-17  Score=113.73  Aligned_cols=117  Identities=15%  Similarity=0.110  Sum_probs=78.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +..+|+++|.+|+|||||+|++++....... ...+    .....+.+ ++..+.++||||..+           +...+
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~t~~----~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~   82 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG----SNVEEIVI-NNTRFLMWDIGGQES-----------LRSSW   82 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHTTSCEEEE-CCSS----SSCEEEEE-TTEEEEEEEESSSGG-----------GTCGG
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCccC-CcCc----eeeEEEEE-CCEEEEEEECCCCHh-----------HHHHH
Confidence            4589999999999999999999987642111 1122    22233444 678899999999865           22233


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|.++..+... ..++..+..... ....|+++|+||+|+...
T Consensus        83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~  137 (181)
T 2h17_A           83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC  137 (181)
T ss_dssp             GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcccC
Confidence            456788999999999986544333 333333332211 123689999999999764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.72  E-value=8.1e-17  Score=111.48  Aligned_cols=121  Identities=20%  Similarity=0.168  Sum_probs=75.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI   94 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~   94 (174)
                      ..+..+|+++|++|+|||||+|+|++.......   ...+.......... .+  ..+.++||||..+.           
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------   79 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY---EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY-----------   79 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC-----------
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcC---CCccceEEEEEEEE-CCEEEEEEEEECCCCccc-----------
Confidence            344589999999999999999999986632221   11111112222333 33  36889999998762           


Q ss_pred             HHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ......++..+|++++|+|.++.-.... ..++..+...... ...|+++|+||+|+...
T Consensus        80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~  138 (187)
T 2a9k_A           80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK  138 (187)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGG
T ss_pred             HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence            1222233445699999999984332222 4555555554321 13689999999998653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.72  E-value=2.2e-17  Score=129.93  Aligned_cols=131  Identities=18%  Similarity=0.227  Sum_probs=86.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCC----hHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG----SEFVGKE   93 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~----~~~~~~~   93 (174)
                      ....+++++|.+|+|||||+|++++....... ...+.|.......+.+ ++..+.+|||||+.+....    .......
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-C------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccC-CCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence            34589999999999999999999987533222 2233344433344445 6778999999997653221    1111111


Q ss_pred             HHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHH
Q 030624           94 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE  159 (174)
Q Consensus        94 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~  159 (174)
                      ...    ++..+|++++|+|+++++...+..++..+.+..     .|+++|+||+|+........+
T Consensus       271 ~~~----~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~-----~~~ilv~NK~Dl~~~~~~~~~  327 (456)
T 4dcu_A          271 ALK----AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAG-----KAVVIVVNKWDAVDKDESTMK  327 (456)
T ss_dssp             HHH----HHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTT-----CEEEEEEECGGGSCCCSSHHH
T ss_pred             HHH----HHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcC-----CCEEEEEEChhcCCCchHHHH
Confidence            122    344569999999999888888888887776632     689999999999865433333

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.72  E-value=2.5e-17  Score=114.03  Aligned_cols=118  Identities=14%  Similarity=0.131  Sum_probs=57.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+|+++|++|+|||||+|.+++......  .....+.........+ ++  ..+.++||||...           +...
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~~   73 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSEDAFNST--FISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER-----------FRTI   73 (183)
T ss_dssp             EEEEEEECCCCC----------------C--HHHHHCEEEEEEEEEE-TTEEEEEEEEEC--------------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEcCCCChh-----------hhhh
Confidence            48999999999999999999997653211  1111122222223333 33  5689999999765           3334


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...++..+|++++|+|.+++.+... ..++..+......  ..|+++|+||+|+...
T Consensus        74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~  128 (183)
T 2fu5_C           74 TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVNDK  128 (183)
T ss_dssp             CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEEC--CCSC
T ss_pred             HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccCCcc
Confidence            4557788999999999985432222 3455555543222  2699999999999754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.72  E-value=2.3e-17  Score=114.03  Aligned_cols=118  Identities=20%  Similarity=0.201  Sum_probs=74.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      +..+|+++|++|+|||||+|.+++.......    ..|.... ...... ++  ..+.++||||..+...          
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~----------   69 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSY----DPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSI----------   69 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCC----CTTCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCC----------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCC----CCCccccEEEEEEE-CCEEEEEEEEeCCCchhhhH----------
Confidence            4589999999999999999999965532111    1122222 222223 33  3568999999887432          


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                       .....+..+|++++|+|.++.-+... ..++..+.+.... ...|+++|+||+|+...
T Consensus        70 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~  126 (181)
T 3t5g_A           70 -FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHME  126 (181)
T ss_dssp             -CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTT
T ss_pred             -HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhc
Confidence             22345678899999999984332222 3444444443322 22689999999998654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.72  E-value=2.7e-17  Score=115.74  Aligned_cols=136  Identities=15%  Similarity=0.116  Sum_probs=80.6

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCC
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   86 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~   86 (174)
                      +.++++++.+.   .+|+++|++|+|||||++++++......     ..|.......+.+ ++..+.++||||.....  
T Consensus        15 ~l~~~~~~~~~---~ki~lvG~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~--   83 (198)
T 1f6b_A           15 VLQFLGLYKKT---GKLVFLGLDNAGKTTLLHMLKDDRLGQH-----VPTLHPTSEELTI-AGMTFTTFDLGGHIQAR--   83 (198)
T ss_dssp             HHHHHTCTTCC---EEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----C--
T ss_pred             HHHHhhccCCC---cEEEEECCCCCCHHHHHHHHhcCCCCcc-----CCCCCceeEEEEE-CCEEEEEEECCCcHhhH--
Confidence            33444555443   6899999999999999999998653211     1122222334444 56789999999987632  


Q ss_pred             hHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC-ChhhHHHHhc
Q 030624           87 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLG  163 (174)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~-~~~~~~~~~~  163 (174)
                               ..+...+..+|++++|+|.+++-+... ..++..+.+.. .....|+++|.||+|+... ....+.++++
T Consensus        84 ---------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~  152 (198)
T 1f6b_A           84 ---------RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEAISEERLREMFG  152 (198)
T ss_dssp             ---------CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred             ---------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccccCCHHHHHHHhC
Confidence                     233445678899999999985433332 33443333221 1123699999999999753 1133444444

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.72  E-value=1.3e-16  Score=116.71  Aligned_cols=122  Identities=17%  Similarity=0.221  Sum_probs=78.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChH--HHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~--~~~~~~~~~~   98 (174)
                      ++|+++|.+|+|||||+|+|++.... .+ ..++.|.........+ .+..+.++||||+.+......  .....+.+..
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~-v~-~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~   78 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQR-VG-NWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS   78 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEE-EE-ECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCC-cc-CCCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence            58999999999999999999998643 22 2345565555555655 677899999999987543100  1111222211


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      . ....+|++++|+|+++ . .....+.   .....  ...|+++|+||+|+...
T Consensus        79 ~-~~~~~d~vi~VvDas~-~-~~~~~l~---~~l~~--~~~pvilv~NK~Dl~~~  125 (256)
T 3iby_A           79 V-IDLEYDCIINVIDACH-L-ERHLYLT---SQLFE--LGKPVVVALNMMDIAEH  125 (256)
T ss_dssp             H-HHSCCSEEEEEEEGGG-H-HHHHHHH---HHHTT--SCSCEEEEEECHHHHHH
T ss_pred             H-hhCCCCEEEEEeeCCC-c-hhHHHHH---HHHHH--cCCCEEEEEEChhcCCc
Confidence            1 1267899999999984 2 1112222   22221  12699999999998653

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.72  E-value=1.4e-16  Score=113.01  Aligned_cols=118  Identities=19%  Similarity=0.207  Sum_probs=76.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC--CcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      +..+|+++|++|+|||||++++++.......   .  +.........+..  ...+.+|||||..+           +..
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~   69 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ---T--SITDSSAIYKVNNNRGNSLTLIDLPGHES-----------LRF   69 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBC---C--CCSCEEEEEECSSTTCCEEEEEECCCCHH-----------HHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccc---C--CcceeeEEEEecCCCccEEEEEECCCChh-----------HHH
Confidence            3479999999999999999999987632221   1  1222233344422  46799999999864           222


Q ss_pred             -HHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhh----hhcCcEEEEEeCcCCCCC
Q 030624           97 -CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK----KIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 -~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~iv~tk~D~~~~  153 (174)
                       ....++..+|++++|+|.++ +........+.+...+..    ....|+++|+||+|+...
T Consensus        70 ~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  130 (214)
T 2fh5_B           70 QLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  130 (214)
T ss_dssp             HHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             HHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence             33345678899999999983 322233344444433222    223699999999999765

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.72  E-value=2.3e-16  Score=120.65  Aligned_cols=131  Identities=17%  Similarity=0.164  Sum_probs=83.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC--Ccce-----------------------------------------
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS--GVTS-----------------------------------------   57 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~--~~t~-----------------------------------------   57 (174)
                      ++|+++|++|||||||+|+|+|......+....  .++.                                         
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  114 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE  114 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence            489999999999999999999976433321111  0000                                         


Q ss_pred             ---------eeEEEEEEEeCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHH
Q 030624           58 ---------TCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL  126 (174)
Q Consensus        58 ---------~~~~~~~~~~~~~~~~~iDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l  126 (174)
                               ......+.......+.+|||||+.+...  ........+...+..++.++|+++++++.. ........++
T Consensus       115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~-~~~~~~~~~~  193 (360)
T 3t34_A          115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA-NQDLATSDAI  193 (360)
T ss_dssp             SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET-TSCGGGCHHH
T ss_pred             cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc-cCCcCCHHHH
Confidence                     0001111111244689999999987532  223455566677777788899999999765 2233334455


Q ss_pred             HHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624          127 HSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus       127 ~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ..+.......  .++++|+||+|+....
T Consensus       194 ~l~~~~~~~~--~~~i~V~nK~Dl~~~~  219 (360)
T 3t34_A          194 KISREVDPSG--DRTFGVLTKIDLMDKG  219 (360)
T ss_dssp             HHHHHSCTTC--TTEEEEEECGGGCCTT
T ss_pred             HHHHHhcccC--CCEEEEEeCCccCCCc
Confidence            5555543222  5899999999998654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.71  E-value=1.1e-16  Score=111.43  Aligned_cols=117  Identities=15%  Similarity=0.094  Sum_probs=75.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +..+|+++|.+|+|||||+|.+++....... .    |.........+ ++..+.++||||..+..           ...
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~~   77 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-P----TIGSNVEEIVI-NNTRFLMWDIGGQESLR-----------SSW   77 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-C----CSCSSCEEEEE-TTEEEEEEECCC----C-----------GGG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCcCc-C----CCccceEEEEE-CCEEEEEEECCCCHhHH-----------HHH
Confidence            3489999999999999999999976543221 1    22222333444 67889999999987522           222


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+...
T Consensus        78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~  132 (187)
T 1zj6_A           78 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC  132 (187)
T ss_dssp             HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTC
T ss_pred             HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCC
Confidence            344577899999999985543333 334433333211 123699999999999764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.71  E-value=1.3e-16  Score=108.36  Aligned_cols=118  Identities=18%  Similarity=0.166  Sum_probs=73.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+|+++|++|+|||||+|++++........   ..+.......... .+  ..+.++||||..+.           ...
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~-----------~~~   67 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYD---PTIEDFYRKEIEV-DSSPSVLEILDTAGTEQF-----------ASM   67 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCC---TTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC-----------HHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCC---CCcceeEEEEEEE-CCEEEEEEEEECCCchhh-----------HHH
Confidence            4789999999999999999999765432211   1111112223333 33  34889999997752           112


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+..+|++++|+|.++..+... ..++..+.+.... ...|+++|+||+|+...
T Consensus        68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~  123 (167)
T 1kao_A           68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESE  123 (167)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGG
T ss_pred             HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCccccc
Confidence            2223445699999999984332222 3444444444321 23699999999998653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.71  E-value=1.5e-17  Score=113.29  Aligned_cols=119  Identities=21%  Similarity=0.107  Sum_probs=74.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ...+|+++|++|+|||||+|++++.......  ....+............ ...+.++||||..+...           .
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~   70 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDY--KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA-----------I   70 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCS--SCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC-----------C
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH-----------H
Confidence            3479999999999999999999986532221  11111222222333311 24689999999765321           1


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+..+|++++|+|.+++.+... ..++..+....   ...|+++|+||+|+...
T Consensus        71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~  124 (168)
T 1z2a_A           71 TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDD  124 (168)
T ss_dssp             CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGG
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcc
Confidence            2234567899999999985322222 34555554443   23699999999998753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.71  E-value=4.7e-17  Score=114.13  Aligned_cols=113  Identities=16%  Similarity=0.205  Sum_probs=71.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC------------------------------
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG------------------------------   69 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~------------------------------   69 (174)
                      ..+|+++|++|+|||||+|+|++........  .............+ .+                              
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTN--TTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHSCCCSSCC--CCCSCEEEEEEEET-TC------------------------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcCCCCcC--ccccceeEEEEEEe-cCcccccccccccccccccccccccccccccc
Confidence            4899999999999999999999876432211  11111111222222 11                              


Q ss_pred             ---------cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcC
Q 030624           70 ---------QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFD  139 (174)
Q Consensus        70 ---------~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~  139 (174)
                               ..+.++||||.....           ......+..+|++++|+|++++.+... ..++..+....+    .
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~  148 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYA-----------SIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----Y  148 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCT-----------TTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----C
T ss_pred             ccccCccceeEEEEEECCCcHHHH-----------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----C
Confidence                     578999999976532           122334567899999999985433332 344444444321    6


Q ss_pred             cEEEEEeCcCC
Q 030624          140 YMIVVFTGGDE  150 (174)
Q Consensus       140 ~~~iv~tk~D~  150 (174)
                      |+++|+||+|.
T Consensus       149 piilv~NK~D~  159 (208)
T 3clv_A          149 IIILVANKIDK  159 (208)
T ss_dssp             EEEEEEECTTC
T ss_pred             cEEEEEECCCc
Confidence            99999999993

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.71  E-value=6.9e-17  Score=111.17  Aligned_cols=121  Identities=15%  Similarity=0.108  Sum_probs=76.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC--CcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      +..+|+++|++|+|||||+|.+++..........  .+.......+.+..  ...+.++||||......           
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-----------   71 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQT--IGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK-----------   71 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHT--TTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT-----------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCc--eeEEEEEEEEEeCCCCEEEEEEEECCCCccccc-----------
Confidence            4589999999999999999999986532111111  11122223333422  25789999999876321           


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCc-EEEEEeCcCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDY-MIVVFTGGDELE  152 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~-~~iv~tk~D~~~  152 (174)
                      ....++..+|++++|+|.+++.+... ..++..+..........| +++|+||+|+..
T Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~  129 (178)
T 2hxs_A           72 MLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH  129 (178)
T ss_dssp             THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred             hhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence            12234567899999999985433222 455555655432211234 789999999965

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.71  E-value=1.8e-16  Score=109.97  Aligned_cols=118  Identities=17%  Similarity=0.112  Sum_probs=77.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ....+|+++|++|+|||||++.+++......     ..|.......+.+ ++..+.++||||...           +...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~i~Dt~G~~~-----------~~~~   76 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIKSVQS-QGFKLNVWDIGGQRK-----------IRPY   76 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECSSCGG-----------GHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcc-----cCcCCeEEEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence            3458999999999999999999998753211     1122222334444 577899999999765           3333


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +...+..+|++++|+|.+++-+... ..++..+..... ....|+++|.||+|+...
T Consensus        77 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~  132 (181)
T 1fzq_A           77 WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA  132 (181)
T ss_dssp             HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC
T ss_pred             HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCcccC
Confidence            4455678899999999985433332 233332222111 123699999999999765

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.71  E-value=3.5e-17  Score=115.40  Aligned_cols=117  Identities=15%  Similarity=0.130  Sum_probs=75.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+|+++|.+|+|||||+|.+++.......  ....+.......+.+ ++  ..+.++||||..+           +...
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~   94 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQ--GSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQER-----------FRTI   94 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGG-----------GHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhCCCCCCC--CCCcceEEEEEEEEE-CCEEEEEEEEECCCcHh-----------HHHH
Confidence            478999999999999999999876532111  111111222223333 33  4789999999765           3334


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      +..++..+|++++|+|.+++.+... ..+++.+......  ..|+++|+||+|+..
T Consensus        95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~  148 (201)
T 2hup_A           95 TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS--NIVQLLIGNKSDLSE  148 (201)
T ss_dssp             HHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGG
T ss_pred             HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCcccc
Confidence            4456678899999999984332222 4555555554322  268999999999975

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.71  E-value=2.9e-17  Score=115.62  Aligned_cols=121  Identities=22%  Similarity=0.197  Sum_probs=74.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE-EEEE-eCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEI   94 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~   94 (174)
                      ..+..+|+++|.+|+|||||+|+|++.......    ..|...... .... .....+.++||||..+...         
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------   87 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY----DPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI---------   87 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC----CCCSEEEEEEEEC----CEEEEEEEECCCCTTCC---------
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC----CCccceEEEEEEEECCEEEEEEEEECCCccchHH---------
Confidence            344589999999999999999999987643221    122222211 1111 1345679999999876432         


Q ss_pred             HHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                        ....++..+|++++|+|.++.-+... ..++..+...... ...|+++|+||+|+...
T Consensus        88 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~  144 (201)
T 3oes_A           88 --LPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK-TRVPVVLVGNKADLSPE  144 (201)
T ss_dssp             --CCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGG
T ss_pred             --HHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCccc
Confidence              23356778999999999984322222 3444444333211 23689999999998743

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.71  E-value=5.1e-17  Score=112.36  Aligned_cols=118  Identities=15%  Similarity=0.105  Sum_probs=74.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+..+|+++|++|+|||||+|++++.......     .|.........+ ++..+.++||||..+..           ..
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~   78 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTK-----PTIGFNVETLSY-KNLKLNVWDLGGQTSIR-----------PY   78 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-----SSTTCCEEEEEE-TTEEEEEEEEC----CC-----------TT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccC-----CcCccceEEEEE-CCEEEEEEECCCCHhHH-----------HH
Confidence            34589999999999999999999976542121     111122333444 57889999999987632           22


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +...+..+|++++|+|.+++-+... ..++..+..... ....|+++|+||+|+...
T Consensus        79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~  134 (183)
T 1moz_A           79 WRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQPGA  134 (183)
T ss_dssp             GGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTSTTC
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hCCCeEEEEEECCCCCCC
Confidence            3456778999999999985543333 333333322110 123699999999999764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.71  E-value=2.3e-16  Score=116.39  Aligned_cols=123  Identities=20%  Similarity=0.227  Sum_probs=81.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh--HHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~--~~~~~~~~~~   97 (174)
                      ..+|+++|.+|+|||||+|+|++... ..+ ...+.|.......+.+ .+..+.++||||+.+.....  ......+.+.
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~-~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVG-NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCE-EEE-ECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCc-ccC-CCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence            47899999999999999999999873 233 2345566555555655 67789999999998855211  1111222222


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      . .....+|++++|+|+++ . .....+...+.+.   .  .|+++|+||+|+...
T Consensus        80 ~-~~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~---~--~p~ivv~NK~Dl~~~  127 (274)
T 3i8s_A           80 Y-ILSGDADLLINVVDASN-L-ERNLYLTLQLLEL---G--IPCIVALNMLDIAEK  127 (274)
T ss_dssp             H-HHHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH---T--CCEEEEEECHHHHHH
T ss_pred             H-HhhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc---C--CCEEEEEECccchhh
Confidence            1 13468899999999983 2 2223344444433   2  699999999998643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.71  E-value=1.4e-17  Score=116.37  Aligned_cols=117  Identities=16%  Similarity=0.158  Sum_probs=74.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+|+++|++|+|||||+|.+++........  ...+.......... ++  ..+.++||||..+...           .
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~   86 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRS-----------I   86 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSC-----------C
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEECCCchhhhh-----------h
Confidence            4789999999999999999999866432211  11222222223333 33  4789999999765322           1


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ....+..+|++++|+|.++..+... ..++..+......  ..|+++|+||+|+..
T Consensus        87 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~  140 (191)
T 2a5j_A           87 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS--NMVIMLIGNKSDLES  140 (191)
T ss_dssp             CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGG
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCC
Confidence            2234567899999999985332222 3455555543222  268999999999965

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.71  E-value=1.1e-17  Score=114.12  Aligned_cols=118  Identities=13%  Similarity=0.161  Sum_probs=73.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ..+|+++|++|+|||||+|++++.......  ....+.........+.. ...+.++||||..+....           .
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-----------~   69 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI-----------T   69 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC-----------C
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh-----------H
Confidence            378999999999999999999976532221  12222222223333311 236899999997653221           2


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ...+..+|++++|+|++++.+... ..++..+.......  .|+++|+||+|+..
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~  122 (170)
T 1g16_A           70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMET  122 (170)
T ss_dssp             HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTT
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCCc
Confidence            234567899999999985432222 45555555543222  68999999999943

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.71  E-value=1.4e-16  Score=111.52  Aligned_cols=118  Identities=12%  Similarity=0.046  Sum_probs=73.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+..+|+++|++|+|||||+|.+++......     .+|.........+ .+..+.++||||..+..           ..
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~   89 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNICFTVWDVGGQDKIR-----------PL   89 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----C-----------TT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEEE-CCEEEEEEECCCCHhHH-----------HH
Confidence            4458999999999999999999987664321     1232233334444 67789999999987632           12


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +...+..+|++++|+|.+++-+... ..++..+..... ....|+++|+||+|+...
T Consensus        90 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~~  145 (192)
T 2b6h_A           90 WRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE-LRDAVLLVFANKQDMPNA  145 (192)
T ss_dssp             HHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccc-cCCCeEEEEEECCCCCCC
Confidence            2234457799999999985533332 233333322111 123699999999999764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.70  E-value=2.9e-17  Score=113.19  Aligned_cols=122  Identities=22%  Similarity=0.237  Sum_probs=75.2

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEeCC--cEEEEEeCCCCCCCCCChHHHH
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVG   91 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~   91 (174)
                      .+..+..+|+++|++|+|||||+|++++......    ...|..... ....+ ++  ..+.++||||..+......   
T Consensus         4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~---   75 (181)
T 2fn4_A            4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSD----YDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMRE---   75 (181)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS----CCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHH---
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccc----cCCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHHHH---
Confidence            3445568999999999999999999998753221    112222222 22333 33  3678999999876432211   


Q ss_pred             HHHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           92 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        92 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                              .++..+|++++|+|.++.-+... ..++..+..... ....|+++|+||+|+...
T Consensus        76 --------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~  129 (181)
T 2fn4_A           76 --------QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLESQ  129 (181)
T ss_dssp             --------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGGG
T ss_pred             --------HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence                    12334699999999984322222 344444433322 122689999999998753

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.70  E-value=3.2e-17  Score=113.48  Aligned_cols=122  Identities=25%  Similarity=0.212  Sum_probs=74.5

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEEeCCc--EEEEEeCCCCCCCCCChHHHH
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVG   91 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~   91 (174)
                      .+..+..+|+++|++|+|||||+|++++.......    ..|.... ...... .+.  .+.++||||..+....     
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-----   82 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY----DPTIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAM-----   82 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC----CTTCCEEEEEEEEE-TTEEEEEEEEECCSCGGGCSS-----
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCCccceeEEEEEe-CCcEEEEEEEECCCchhhHHH-----
Confidence            34445689999999999999999999976532221    1122112 222223 443  3567999997653211     


Q ss_pred             HHHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           92 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        92 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                            ...++..+|++++|+|.+++-+... ..++..+...... ...|+++|+||+|+...
T Consensus        83 ------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~  138 (183)
T 3kkq_A           83 ------REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHL  138 (183)
T ss_dssp             ------HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTT
T ss_pred             ------HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhc
Confidence                  1122344699999999985422222 4455555443222 23689999999998753

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.70  E-value=7e-17  Score=109.93  Aligned_cols=119  Identities=21%  Similarity=0.081  Sum_probs=63.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ..+|+++|++|+|||||+|++++....... ...+.+. .  ...... ....+.++||||...           +....
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~--~~~~~~~~~~~~~i~D~~g~~~-----------~~~~~   66 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-D--RSIVVDGEEASLMVYDIWEQDG-----------GRWLP   66 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-E--EEEEETTEEEEEEEEECC--------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-E--EEEEECCEEEEEEEEECCCCcc-----------chhhh
Confidence            368999999999999999999986643221 1122222 1  122221 234678999999876           22333


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ...+..+|++++|+|.+++-+... ..++..+..... ....|+++|+||+|+....
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~  122 (166)
T 3q72_A           67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSR  122 (166)
T ss_dssp             ------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSC
T ss_pred             hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEecccccccc
Confidence            345677899999999985432222 344444443311 1236999999999997543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.70  E-value=5e-17  Score=115.09  Aligned_cols=118  Identities=14%  Similarity=0.194  Sum_probs=76.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ...+|+++|++|+|||||+|++++......  .....+.......+.+ .+  ..+.+|||||.....           .
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-----------~   84 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFR-----------T   84 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCCCCCS--SSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGT-----------C
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHH-----------H
Confidence            348999999999999999999997653222  1122222333333444 33  468999999976532           1


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      .+...+..+|++++|+|++++.+... ..++..+.......  .|+++|+||+|+..
T Consensus        85 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~  139 (213)
T 3cph_A           85 ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMET  139 (213)
T ss_dssp             CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCSS
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcc
Confidence            22334567899999999984332222 45555555543322  68999999999943

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.70  E-value=2.2e-16  Score=111.14  Aligned_cols=121  Identities=20%  Similarity=0.168  Sum_probs=76.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI   94 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~   94 (174)
                      ..+..+|+++|++|+|||||+|.+++.......   .+.+.........+ .+  ..+.++||||..+.           
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------   75 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY---EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY-----------   75 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC-----------
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCC---CCccceEEEEEEEE-CCEEEEEEEEcCCChhhh-----------
Confidence            344589999999999999999999976632211   11111112223333 33  36889999998762           


Q ss_pred             HHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ......++..+|++++|+|.++.-+... ..++..+...... ...|+++|+||+|+...
T Consensus        76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~  134 (206)
T 2bov_A           76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK  134 (206)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGG
T ss_pred             HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCcccc
Confidence            1222233445699999999984322222 4455555554321 13699999999999753

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.70  E-value=4.4e-17  Score=116.28  Aligned_cols=118  Identities=17%  Similarity=0.157  Sum_probs=77.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE--EEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE   93 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~   93 (174)
                      .+..+|+++|.+|+|||||++.++.......    ..+|....+  ..... .+  ..+.+|||+|..+.          
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~----~~~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~----------   75 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNT----YQATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERF----------   75 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC--------------CEEEEEEC-SSCEEEEEEECCSCTTTC----------
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCC----cCCccceEEEEEEEEe-cceEEEEEEEECCCchhh----------
Confidence            3457999999999999999999987653222    112222221  12222 22  35789999998873          


Q ss_pred             HHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           94 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        94 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                       ......++..++++++|+|.+++-+... ..|+..+....+..  .|++||.||+|+...
T Consensus        76 -~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~  133 (216)
T 4dkx_A           76 -RSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADK  133 (216)
T ss_dssp             -GGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGG
T ss_pred             -hhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhc
Confidence             2333456778899999999985443333 56777777765544  589999999998754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.70  E-value=1.5e-16  Score=119.24  Aligned_cols=126  Identities=20%  Similarity=0.199  Sum_probs=84.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|.+|+|||||+|.+++....... ...+.|.........+.....+.+|||||..+.      ..........
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~~~~   75 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF------MENYFTKQKD   75 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGG-GGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH------HHHHHTTTHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccc-cCcCCccceEEEEEEeCCceEEEEEECCCcHHH------hhhhhhhHHH
Confidence            378999999999999999999887432221 134455555555555435668999999997641      1111123344


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ..+.++|++++|+|+++.-+..+ ..+.+.+.+........|+++|+||+|+..
T Consensus        76 ~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~  129 (307)
T 3r7w_A           76 HIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ  129 (307)
T ss_dssp             HHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred             HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence            45678899999999985544444 344455555432222369999999999976

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.70  E-value=9e-18  Score=117.31  Aligned_cols=119  Identities=13%  Similarity=0.094  Sum_probs=76.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ..+|+++|++|+|||||+|.+++...........+.+...  ...... ....+.++||||...           +....
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~   89 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKV--KTVYRHEKRVKLQIWDTAGQER-----------YRTIT   89 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEE--EEEEETTTTEEEEEECHHHHHH-----------CHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEE--EEEEECCEEEEEEEEeCCChHH-----------HHHHH
Confidence            4799999999999999999999765322211111222222  222221 345789999999543           33444


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|.+++-+... ..+++.+.......  .|+++|+||+|+...
T Consensus        90 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~  143 (191)
T 3dz8_A           90 TAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDMEEE  143 (191)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG
T ss_pred             HHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc
Confidence            556778899999999985322222 45555555543222  689999999998643

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.70  E-value=3.3e-17  Score=115.57  Aligned_cols=123  Identities=14%  Similarity=0.104  Sum_probs=77.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ....+|+++|++|+|||||+|+|++......  .....+............ ...+.++||||.....           .
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~   72 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQ--YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQ-----------S   72 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGS-----------C
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH-----------H
Confidence            3458999999999999999999998764322  112222223333333311 2468999999976522           2


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh--hhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~~iv~tk~D~~~~  153 (174)
                      ....++..+|++++|+|++++.+... ..++..+......  ....|+++|+||+|+...
T Consensus        73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  132 (207)
T 1vg8_A           73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR  132 (207)
T ss_dssp             SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred             hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc
Confidence            22345678899999999985432222 3455555544321  023699999999999743

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.70  E-value=1.6e-16  Score=125.30  Aligned_cols=125  Identities=18%  Similarity=0.178  Sum_probs=66.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+|+++|++|+|||||+|+|++....... ...+.|.......+.+ ++..+.+|||||+.++.   +.+.....+....
T Consensus       234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs-~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~---~~ve~~gi~~~~~  308 (476)
T 3gee_A          234 VSTVIAGKPNAGKSTLLNTLLGQERAIVS-HMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAG---EEIEHEGIRRSRM  308 (476)
T ss_dssp             EEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------C
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCCCcch---hHHHHHHHHHHHh
Confidence            67999999999999999999987532121 2233444444445555 67889999999997632   2222222344455


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      .+..+|++++|+|++++.+.... ...+.+... .   ..|+++|+||+|+....
T Consensus       309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~---~~piIvV~NK~Dl~~~~  359 (476)
T 3gee_A          309 KMAEADLILYLLDLGTERLDDELTEIRELKAAH-P---AAKFLTVANKLDRAANA  359 (476)
T ss_dssp             CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T---TSEEEEEEECTTSCTTT
T ss_pred             hcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C---CCCEEEEEECcCCCCcc
Confidence            77899999999999877666321 222222222 2   26999999999998764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.70  E-value=2e-16  Score=108.41  Aligned_cols=121  Identities=21%  Similarity=0.161  Sum_probs=70.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      +..+|+++|++|+|||||+|.+++....... ...+.+..  .....+ ++  ..+.++||||.....         ...
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~--~~~~~~-~~~~~~~~~~D~~g~~~~~---------~~~   69 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVY--ERTLTV-DGEDTTLVVVDTWEAEKLD---------KSW   69 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEE--EEEEEE-TTEEEEEEEECCC----------------CH
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCcccc-Ccccccee--EEEEEE-CCEEEEEEEEecCCCCccc---------hhh
Confidence            3479999999999999999999987643222 22222222  222333 33  367899999987520         112


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+..+|++++|+|.+++-+... ..++..+..... ....|+++|+||+|+...
T Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~  126 (175)
T 2nzj_A           70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARC  126 (175)
T ss_dssp             HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTT
T ss_pred             hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccc
Confidence            22345677899999999985332222 344444444311 113689999999999764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.70  E-value=1e-16  Score=112.48  Aligned_cols=128  Identities=16%  Similarity=0.143  Sum_probs=76.9

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE--eCCcEEEEEeCCCCCCCCCChHHHHH
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGK   92 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~iDtpG~~~~~~~~~~~~~   92 (174)
                      .+..+..+|+++|.+|+|||||++.+.+.......   .+............  .....+.+|||||..........   
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~---   88 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNET---LFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD---   88 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGG---GGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC---
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcce---eeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh---
Confidence            34445689999999999999999999986432211   11111111122221  13467899999998764322100   


Q ss_pred             HHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           93 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                       .    ..++.++|++++|+|.+++.......+.+++.+........|+++|.||+|+...
T Consensus        89 -~----~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~  144 (196)
T 3llu_A           89 -Y----EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD  144 (196)
T ss_dssp             -H----HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred             -c----ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence             0    1234567999999999866333335555555554222223699999999998753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.70  E-value=5.8e-17  Score=110.29  Aligned_cols=118  Identities=17%  Similarity=0.170  Sum_probs=73.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+|+++|++|+|||||+|++++.......    ..|..... ...... ....+.++||||..+...           .
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----------~   67 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY----DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-----------M   67 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSC----CCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-----------H
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCCccceEEEEEEECCEEEEEEEEECCChHHHHH-----------H
Confidence            478999999999999999999986532211    12222221 222221 123688999999876321           1


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+..+|++++|+|.+++-+... ..+++.+...... ...|+++|+||+|+...
T Consensus        68 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~  123 (167)
T 1c1y_A           68 RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDE  123 (167)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGG
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECcccccc
Confidence            1122334699999999985322222 3455555554321 23689999999999754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.70  E-value=4.5e-16  Score=108.35  Aligned_cols=123  Identities=18%  Similarity=0.146  Sum_probs=72.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHH
Q 030624           14 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVG   91 (174)
Q Consensus        14 ~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~   91 (174)
                      +.+..+..+|+++|.+|+|||||+|.|++.......   ...+.......... .+  ..+.++||||..+         
T Consensus        15 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~---------   81 (190)
T 3con_A           15 YFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEY---DPTIEDSYRKQVVI-DGETCLLDILDTAGQEE---------   81 (190)
T ss_dssp             ----CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCC------------
T ss_pred             cccccceeEEEEECcCCCCHHHHHHHHHcCCCcccc---CCccceEEEEEEEE-CCEEEEEEEEECCChHH---------
Confidence            344455689999999999999999999976532211   11111111222333 33  3488999999765         


Q ss_pred             HHHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           92 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        92 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                        +......++..+|++++|+|.++..+..+ ..++..+...... ...|+++|+||+|+..
T Consensus        82 --~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~  140 (190)
T 3con_A           82 --YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPT  140 (190)
T ss_dssp             ----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred             --HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCc
Confidence              23334456778899999999985433222 4455555554321 1268999999999875

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.70  E-value=6e-17  Score=112.79  Aligned_cols=117  Identities=13%  Similarity=0.033  Sum_probs=77.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +..+|+++|++|+|||||+|++++.......     +|.........+ ++..+.++||||..+....           .
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~-----------~   83 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTV-----PTVGVNLETLQY-KNISFEVWDLGGQTGVRPY-----------W   83 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEEEC-----SSTTCCEEEEEE-TTEEEEEEEECCSSSSCCC-----------C
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCcC-----CCCceEEEEEEE-CCEEEEEEECCCCHhHHHH-----------H
Confidence            4589999999999999999999876643221     122223334444 6778999999998763321           2


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+...
T Consensus        84 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~  138 (189)
T 2x77_A           84 RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDE-LRKSLLLIFANKQDLPDA  138 (189)
T ss_dssp             SSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCST-TTTCEEEEEEECTTSTTC
T ss_pred             HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhh-cCCCeEEEEEECCCCcCC
Confidence            345678999999999985543333 233322222110 123699999999999765

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.70  E-value=1.3e-16  Score=111.64  Aligned_cols=115  Identities=15%  Similarity=0.089  Sum_probs=76.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE-EEEEeCCc--EEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      +..+|+++|.+|+|||||+|.+++......    ...|...... .... .+.  .+.++||||..+           +.
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~----~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~   85 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTA----YVPTVFENFSHVMKY-KNEEFILHLWDTAGQEE-----------YD   85 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSS----CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GT
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCCc----cCCeeeeeeEEEEEE-CCEEEEEEEEECCCcHH-----------HH
Confidence            457999999999999999999998764211    1122222222 2222 333  468999999765           33


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      .....++..+|++++|+|.+++-+...  ..++..+.... .  ..|+++|+||+|+..
T Consensus        86 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~p~ilv~nK~Dl~~  141 (194)
T 3reg_A           86 RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-D--TAKTVLVGLKVDLRK  141 (194)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-T--TSEEEEEEECGGGCC
T ss_pred             HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEChhhcc
Confidence            344557788999999999985433333  34555555442 1  259999999999874

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.69  E-value=4.9e-16  Score=106.12  Aligned_cols=120  Identities=18%  Similarity=0.254  Sum_probs=73.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+++++|++|+|||||+|++++......  ...+.|.......+.+ ++..+.++||||+.+.....  ..+.+.....
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~   77 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIG--NWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDYI   77 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSS--HHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeecc--CCCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcc--hhHHHHHHHH
Confidence            47899999999999999999998653322  1122233333333444 56789999999998743221  1111211111


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                       ...++|++++++|.++ .. ....++..+.+   .  ..|+++|.||+|+..
T Consensus        78 -~~~~~~~~i~v~D~~~-~~-~~~~~~~~~~~---~--~~p~ilv~nK~Dl~~  122 (165)
T 2wji_A           78 -INEKPDLVVNIVDATA-LE-RNLYLTLQLME---M--GANLLLALNKMDLAK  122 (165)
T ss_dssp             -HHHCCSEEEEEEETTC-HH-HHHHHHHHHHH---T--TCCEEEEEECHHHHH
T ss_pred             -hcCCCCEEEEEecCCc-hh-HhHHHHHHHHh---c--CCCEEEEEEchHhcc
Confidence             1136799999999983 21 12334333332   1  269999999999853

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.69  E-value=2.1e-17  Score=117.66  Aligned_cols=120  Identities=21%  Similarity=0.222  Sum_probs=76.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ...+|+++|.+|+|||||+|+|++...........+  .............  ..+.++||||........         
T Consensus        10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------   78 (218)
T 4djt_A           10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVG--AVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK---------   78 (218)
T ss_dssp             CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTT--EEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC---------
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--eeeEEEEEEeCCCcEEEEEEEecCCchhhchHH---------
Confidence            347999999999999999999997653322111111  1111111211112  468999999977533221         


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                        ...+..+|++++|+|.+++.+..+ ..++..+.......  .|+++|+||+|+...
T Consensus        79 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~  132 (218)
T 4djt_A           79 --DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNR  132 (218)
T ss_dssp             --HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC--
T ss_pred             --HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc
Confidence              224566899999999985543333 45666666654333  699999999998754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.69  E-value=5.6e-17  Score=114.01  Aligned_cols=120  Identities=23%  Similarity=0.160  Sum_probs=73.8

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEeCCc--EEEEEeCCCCCCCCCChHHHH
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVG   91 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~   91 (174)
                      ....+..+|+++|.+|+|||||++.+++.... ..   ...|..... ..... ++.  .+.++||||..+...      
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~-~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~------   83 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYP-TE---YIPTAFDNFSAVVSV-DGRPVRLQLCDTAGQDEFDK------   83 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEEEEE-TTEEEEEEEEECCCSTTCSS------
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCC-CC---CCCcccceeEEEEEE-CCEEEEEEEEECCCCHHHHH------
Confidence            34445589999999999999999999987632 21   111221111 22223 343  567999999976432      


Q ss_pred             HHHHHHHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           92 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        92 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                           ....++..+|++++|+|.+++.+...  ..++..+.....   ..|+++|+||+|+...
T Consensus        84 -----~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~  139 (201)
T 2q3h_A           84 -----LRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRED  139 (201)
T ss_dssp             -----SGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGC
T ss_pred             -----HhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhc
Confidence                 23346778899999999985433333  245555555432   3699999999999753

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.69  E-value=4.3e-17  Score=116.64  Aligned_cols=118  Identities=17%  Similarity=0.134  Sum_probs=75.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ...+|+++|++|+|||||+|.|++.......  ....+.......+.+ .+  ..+.+|||||.....           .
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~   77 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS--KSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYR-----------A   77 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTT-----------C
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEECCCccchh-----------h
Confidence            3479999999999999999999987643221  111222222223333 33  478999999987632           2


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ....++..+|++++|+|.+++.+... ..++..+......  ..|+++|+||+|+..
T Consensus        78 ~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~  132 (223)
T 3cpj_B           78 ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD--NVAVGLIGNKSDLAH  132 (223)
T ss_dssp             CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGG
T ss_pred             hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence            23456788999999999985433333 3455555554322  268999999999975

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.69  E-value=1.8e-17  Score=116.76  Aligned_cols=119  Identities=17%  Similarity=0.145  Sum_probs=72.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ...+|+++|++|+|||||+|.+++.......  ....+.......... .+  ..+.++||||...           +..
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~   89 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDS--NHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQER-----------FRS   89 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHH-----------HSC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCccC--CCcccceeEEEEEEE-CCeeeEEEEEcCCCcHh-----------HHH
Confidence            3489999999999999999999987643221  111222222223333 33  4789999999643           222


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+..+|++++|+|.+++.+... ..++..+......  ..|+++|+||+|+...
T Consensus        90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~  145 (200)
T 2o52_A           90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP--NIVVILCGNKKDLDPE  145 (200)
T ss_dssp             CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCT--TCEEEEEEECGGGGGG
T ss_pred             HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCcccc
Confidence            23345677899999999985432222 4455555544322  2689999999998643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.69  E-value=1.4e-17  Score=116.19  Aligned_cols=122  Identities=16%  Similarity=0.141  Sum_probs=75.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      .+..+|+++|++|+|||||+|+|++.......  ....+.........+. ....+.++||||..+..           .
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~   79 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPEL--AATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR-----------T   79 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC-----------C
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccC--CCccceEEEEEEEEECCeEEEEEEEeCCCchhhh-----------h
Confidence            34589999999999999999999987643221  1222222222333331 12468999999977532           1


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+...
T Consensus        80 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~  136 (195)
T 1x3s_A           80 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENR  136 (195)
T ss_dssp             SHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSC
T ss_pred             hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCccc
Confidence            22234567899999999985422222 334444433221 123689999999999543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.69  E-value=4.7e-17  Score=114.67  Aligned_cols=118  Identities=22%  Similarity=0.159  Sum_probs=56.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC--cccccccCCCCccee--eEEEEEEEeC---CcEEEEEeCCCCCCCCCChHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGR--RAFKSRASSSGVTST--CEMQRTVLKD---GQVVNVIDTPGLFDFSAGSEFVGK   92 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~--~~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~~~iDtpG~~~~~~~~~~~~~   92 (174)
                      ..+|+++|++|+|||||+|++++.  .....    ...|..  .....+.+..   ...+.++||||...          
T Consensus        20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------   85 (208)
T 2yc2_C           20 RCKVAVVGEATVGKSALISMFTSKGSKFLKD----YAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL----------   85 (208)
T ss_dssp             EEEEEEC--------------------------------------CEEEECTTSSEEEEEEEEETTTTHH----------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCcccCC----CCCccceEEEEEEEEECCcccEEEEEEEECCCcHH----------
Confidence            479999999999999999999987  32111    112222  2223333412   34689999999854          


Q ss_pred             HHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh-hhcCcEEEEEeCcCCCC
Q 030624           93 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE  152 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~~iv~tk~D~~~  152 (174)
                       +.......+..+|++++|+|.+++.+... ..++..+...... ....|+++|+||+|+..
T Consensus        86 -~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  146 (208)
T 2yc2_C           86 -YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP  146 (208)
T ss_dssp             -HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred             -HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence             44556667889999999999985433222 4555555554320 01369999999999976

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.68  E-value=1.9e-16  Score=110.92  Aligned_cols=120  Identities=23%  Similarity=0.185  Sum_probs=74.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ...+|+++|++|+|||||+|+|++.............+.   ...... ..  ..+.++||||..+.           ..
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~   71 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY---RQVISC-DKSVCTLQITDTTGSHQF-----------PA   71 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE---EEEEEE-TTEEEEEEEEECCGGGSC-----------HH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce---eEEEEE-CCEEEEEEEEeCCChHHh-----------HH
Confidence            348999999999999999999998654222111111111   111222 22  36889999997752           12


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+..+|++++|+|.++..+... ..++..+.+........|+++|+||+|+...
T Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~  129 (199)
T 2gf0_A           72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR  129 (199)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC
T ss_pred             HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc
Confidence            22233445699999999984332222 3455556555332223699999999999753

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.68  E-value=3e-16  Score=115.59  Aligned_cols=120  Identities=22%  Similarity=0.271  Sum_probs=78.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|++|+|||||+|+|++.... .+ ...+.|.........+ ++..+.++||||+.+......  ...+.+.. 
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~-~~-~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~~~~~~~~-   76 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQH-VG-NWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSI--DELIARNF-   76 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEE-EE-ECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCH--HHHHHHHH-
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcc-cC-CCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCH--HHHHHHHh-
Confidence            479999999999999999999998652 33 2344555555555556 677899999999987543221  11111111 


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                      ....++|++++|+|+++ . .....+   +.+..... ..|+++++||+|+.
T Consensus        77 ~~~~~~d~vi~v~D~~~-~-~~~~~~---~~~~~~~~-~~p~ilv~NK~Dl~  122 (271)
T 3k53_A           77 ILDGNADVIVDIVDSTC-L-MRNLFL---TLELFEME-VKNIILVLNKFDLL  122 (271)
T ss_dssp             HHTTCCSEEEEEEEGGG-H-HHHHHH---HHHHHHTT-CCSEEEEEECHHHH
T ss_pred             hhccCCcEEEEEecCCc-c-hhhHHH---HHHHHhcC-CCCEEEEEEChhcC
Confidence            12467899999999983 2 122222   22322111 15899999999965

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.68  E-value=9.7e-16  Score=112.14  Aligned_cols=120  Identities=23%  Similarity=0.254  Sum_probs=78.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|.+|+|||||+|+|++.... .+ ..++.|.........+ .+..+.++||||+.+......  ...+.+...
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~-~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~~   79 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTKQY-VA-NWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARDYL   79 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTCEE-EE-ECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCc-cc-CCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHHHH
Confidence            478999999999999999999997743 22 2335555555555555 577899999999987543221  111211111


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                       ....+|++++|+|++ .+.. ...+...+.+   ..  .|+++|+||+|+..
T Consensus        80 -~~~~~d~ii~V~D~t-~~~~-~~~~~~~l~~---~~--~pvilv~NK~Dl~~  124 (258)
T 3a1s_A           80 -LKGDADLVILVADSV-NPEQ-SLYLLLEILE---ME--KKVILAMTAIDEAK  124 (258)
T ss_dssp             -HHSCCSEEEEEEETT-SCHH-HHHHHHHHHT---TT--CCEEEEEECHHHHH
T ss_pred             -hhcCCCEEEEEeCCC-chhh-HHHHHHHHHh---cC--CCEEEEEECcCCCC
Confidence             125789999999998 4322 2223333322   22  69999999999864

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.68  E-value=1.1e-16  Score=113.31  Aligned_cols=117  Identities=21%  Similarity=0.147  Sum_probs=75.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI   94 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~   94 (174)
                      ....+|+++|.+|+|||||+|++++.......    ..|..... ..... .+  ..+.++||||..+..          
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~----------   87 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVY----VPTVFENYVADIEV-DGKQVELALWDTAGQEDYD----------   87 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-----------CCEEEEEEEE-TTEEEEEEEEECTTCTTCT----------
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcC----CCcccceEEEEEEE-CCEEEEEEEEECCCcHHHH----------
Confidence            33489999999999999999999987643221    11111111 12233 33  368899999987632          


Q ss_pred             HHHHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                       ......+..+|++++|+|.++.-+...  ..++..+.... .  ..|+++|+||+|+...
T Consensus        88 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~piilv~nK~Dl~~~  144 (207)
T 2fv8_A           88 -RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-P--NVPIILVANKKDLRSD  144 (207)
T ss_dssp             -TTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-T--TCCEEEEEECGGGGGC
T ss_pred             -HHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhhhcc
Confidence             233346788999999999984322222  35555555542 1  2699999999999765

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.68  E-value=3e-16  Score=108.85  Aligned_cols=118  Identities=21%  Similarity=0.228  Sum_probs=72.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+|+++|++|+|||||+|+|++.......   .+.+.......... .+.  .+.++||||..+....           
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-----------   68 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNHFVDEY---DPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAM-----------   68 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCCCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTT-----------
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCCCCCCC---CCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHH-----------
Confidence            479999999999999999999976632221   11122222222333 343  4678999997763321           


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...++..+|++++|+|.++.-+... ..++..+...... ...|+++|+||+|+...
T Consensus        69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~  124 (189)
T 4dsu_A           69 RDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLPSR  124 (189)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSSSC
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCccc
Confidence            1123344699999999985432222 4455555554222 23689999999999754

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.68  E-value=6.9e-17  Score=122.48  Aligned_cols=126  Identities=17%  Similarity=0.108  Sum_probs=80.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      .|+++|.+|||||||+|+|++..+...  .....|.......+.+.....+.++||||+.+.......+...+.+.+.. 
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~--~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~-  236 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER-  236 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH-
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccc--cCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHh-
Confidence            589999999999999999998753211  22233444444445553347899999999765322233344445554443 


Q ss_pred             cCCceEEEEEEeCCCC--CCHH-H-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          102 KDGIHAVLVVFSVRSR--FSQE-E-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~--~~~~-~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                         +|++++|+|+++.  -... + ..+++.+..+.......|+++|+||+|+...
T Consensus       237 ---~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~  289 (342)
T 1lnz_A          237 ---TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA  289 (342)
T ss_dssp             ---CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred             ---ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence               4999999999741  2222 2 4455555554221123689999999999754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.68  E-value=1.2e-16  Score=109.08  Aligned_cols=119  Identities=23%  Similarity=0.123  Sum_probs=67.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|++|+|||||+|.+++.......  ....+.......... ++  ..+.++||||..+....          ..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~----------~~   69 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGLQGDHAH--EMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGW----------LQ   69 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC------------------
T ss_pred             EEEEEECCCCCCHHHHHHHHHhccCcccc--cCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccchh----------hh
Confidence            68999999999999999999876532221  122223233333333 33  45789999998763210          11


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..++..+|++++|+|.+++-+... ..++..+...... ...|+++|+||+|+...
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~  124 (169)
T 3q85_A           70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARS  124 (169)
T ss_dssp             CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGG
T ss_pred             hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhc
Confidence            112334699999999985322222 3444444443221 13699999999998743

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.68  E-value=8.8e-17  Score=126.30  Aligned_cols=121  Identities=23%  Similarity=0.252  Sum_probs=75.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+|+++|++|+|||||+|+|++....... ...+.|.........+ ++..+.++||||+.++.   +.......+....
T Consensus       225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~---~~ve~~gi~~~~~  299 (462)
T 3geh_A          225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVT-DLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETS---DQVEKIGVERSRQ  299 (462)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHBSCCS-CCTTCCHHHHHHEEEE-TTEEEEECC-----------------------C
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCeeEEEEEEEEEE-CCEEEEEEECCccccch---hHHHHHHHHHHhh
Confidence            67999999999999999999986532121 2233444433334444 67889999999997632   2222222334445


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+..+|++++|+|.+++.+..+..+++.+..       .|+++|+||+|+...
T Consensus       300 ~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~  345 (462)
T 3geh_A          300 AANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK  345 (462)
T ss_dssp             CCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG
T ss_pred             hhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc
Confidence            6788999999999987888777666554432       589999999999764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.67  E-value=3.3e-16  Score=109.42  Aligned_cols=117  Identities=18%  Similarity=0.111  Sum_probs=77.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ...+|+++|++|+|||||++.+++..........   +.........+ .+  ..+.+|||||..+..           .
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~-----------~   81 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPT---VFDHYAVSVTV-GGKQYLLGLYDTAGQEDYD-----------R   81 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCS---SCCCEEEEEES-SSCEEEEEEECCCCSSSST-----------T
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc---ccceeEEEEEE-CCEEEEEEEEECCCCcchh-----------H
Confidence            4479999999999999999999977532111111   11111122323 33  467899999988632           2


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+..+|++++|+|.+++-+...  ..++..+.+...   ..|+++|+||+|+...
T Consensus        82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  137 (194)
T 2atx_A           82 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRDD  137 (194)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTTC
T ss_pred             HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccc
Confidence            33456788999999999985432222  245666665422   2699999999999764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.67  E-value=5.4e-16  Score=108.23  Aligned_cols=135  Identities=9%  Similarity=0.050  Sum_probs=80.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeeEEEEE---EE-eCCcEEEEEeCCCCCCCCCChH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRT---VL-KDGQVVNVIDTPGLFDFSAGSE   88 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~---~~-~~~~~~~~iDtpG~~~~~~~~~   88 (174)
                      ...+|+++|++|+|||||++.+.+.........      ....|........   .. .....+.++||||....     
T Consensus        13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----   87 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY-----   87 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC-----
T ss_pred             cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH-----
Confidence            347999999999999999999887543211100      0111222221111   01 01235899999998762     


Q ss_pred             HHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhh----hhcCcEEEEEeCcCCCCCC-hhhHHHHhc
Q 030624           89 FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK----KIFDYMIVVFTGGDELEDN-DETLEDYLG  163 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~iv~tk~D~~~~~-~~~~~~~~~  163 (174)
                            ......++..+|++++|+|.+++....+...++.+...+..    ....|+++|+||+|+.... ....+++.+
T Consensus        88 ------~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~  161 (198)
T 3t1o_A           88 ------NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVD  161 (198)
T ss_dssp             ------SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHC
T ss_pred             ------HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHH
Confidence                  23344467888999999999854444444444444333221    1336999999999997642 123344444


Q ss_pred             c
Q 030624          164 R  164 (174)
Q Consensus       164 ~  164 (174)
                      +
T Consensus       162 ~  162 (198)
T 3t1o_A          162 P  162 (198)
T ss_dssp             T
T ss_pred             h
Confidence            3

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.67  E-value=3.5e-16  Score=117.37  Aligned_cols=138  Identities=14%  Similarity=0.163  Sum_probs=79.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccc--CCCCc----ceee----------------------------------
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA--SSSGV----TSTC----------------------------------   59 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~--~~~~~----t~~~----------------------------------   59 (174)
                      .++|+++|.+|+|||||+|+|+|......+.  .+..+    +...                                  
T Consensus        24 ~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (315)
T 1jwy_B           24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (315)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHH
Confidence            4799999999999999999999987522221  11101    0000                                  


Q ss_pred             -----------------EEEEEEEeCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccCCceEEEEEEeC-CCCCC
Q 030624           60 -----------------EMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVLVVFSV-RSRFS  119 (174)
Q Consensus        60 -----------------~~~~~~~~~~~~~~~iDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~~~-~~~~~  119 (174)
                                       ....+.......+.++||||+.+...  ..+.....+...+..++..+|++++|++. +..+.
T Consensus       104 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~  183 (315)
T 1jwy_B          104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA  183 (315)
T ss_dssp             HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred             HHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh
Confidence                             00001122345799999999975221  11223344555555566788999999986 43444


Q ss_pred             HHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624          120 QEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  163 (174)
Q Consensus       120 ~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~  163 (174)
                      ..+ ..+++.+..     ...|+++|+||+|+.... ....++++
T Consensus       184 ~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~~-~~~~~~~~  222 (315)
T 1jwy_B          184 NSDALQLAKEVDP-----EGKRTIGVITKLDLMDKG-TDAMEVLT  222 (315)
T ss_dssp             TCSHHHHHHHHCS-----SCSSEEEEEECTTSSCSS-CCCHHHHT
T ss_pred             hhHHHHHHHHhCC-----CCCcEEEEEcCcccCCcc-hHHHHHHh
Confidence            333 244433322     126999999999998654 22344444

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.67  E-value=3.4e-16  Score=106.09  Aligned_cols=118  Identities=20%  Similarity=0.219  Sum_probs=72.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+|+++|++|+|||||+|.+++.......   ...+.......... .+  ..+.++||||..+..           ..
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~~   67 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEC---DPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS-----------AM   67 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCC-----------HH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCcccc---CCccceEEEEEEEE-CCEEEEEEEEECCCchhhh-----------HH
Confidence            468999999999999999999976532221   11111111222222 33  347899999987632           11


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...++..+|++++|+|.++..+... ..++..+...... ...|+++|+||+|+...
T Consensus        68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~  123 (166)
T 2ce2_X           68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAAR  123 (166)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCC
T ss_pred             HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhc
Confidence            1122334699999999984432222 4555555554321 13689999999998763

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.67  E-value=2.5e-16  Score=109.03  Aligned_cols=117  Identities=20%  Similarity=0.098  Sum_probs=76.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      +..+|+++|++|+|||||++++++............   ......... .+  ..+.++||||..+.           ..
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~   68 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF---DNYSANVMV-DGKPVNLGLWDTAGQEDY-----------DR   68 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC---CEEEEEEEE-TTEEEEEEEECCCCSGGG-----------TT
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccc---ceeEEEEEE-CCEEEEEEEEECCCCHhH-----------HH
Confidence            357999999999999999999997653222111111   111112222 33  34679999998752           23


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+..+|++++|+|.+++.+...  ..++..+.....   ..|+++|+||+|+...
T Consensus        69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  124 (186)
T 1mh1_A           69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD  124 (186)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC
T ss_pred             HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc
Confidence            33456788999999999985433333  245666655432   3699999999999764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.67  E-value=2.5e-16  Score=110.51  Aligned_cols=124  Identities=23%  Similarity=0.142  Sum_probs=73.1

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHH
Q 030624           16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE   93 (174)
Q Consensus        16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~   93 (174)
                      +.....+|+++|.+|+|||||+|.+++........  ...+.......+.+ ++  ..+.+|||||.....   .    .
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~---~----~   88 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE--PENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAG---G----W   88 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGT--TTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGG---H----H
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCC--CCcccceEEEEEEE-CCEEEEEEEEecCCCccch---h----h
Confidence            33445899999999999999999998654221111  11122222222333 33  356789999987521   1    1


Q ss_pred             HHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           94 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        94 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +.   ..++..+|++++|+|.+++-+... ..++..+...... ...|+++|.||+|+...
T Consensus        89 ~~---~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~  145 (195)
T 3cbq_A           89 LR---DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARS  145 (195)
T ss_dssp             HH---HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTTT
T ss_pred             hH---HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhcccc
Confidence            11   123345699999999985332222 3455555443211 23689999999999754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.67  E-value=2.3e-16  Score=123.60  Aligned_cols=127  Identities=21%  Similarity=0.221  Sum_probs=76.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh-HHHHH-HHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS-EFVGK-EIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~-~~~~~-~~~~~   97 (174)
                      ..+++++|++|+|||||+|+|++....... ...+.|.......+.+ ++..+.++||||+....... +.... ...+ 
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~-~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~-  256 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNKERALVS-PIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR-  256 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEEC-CCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH-
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcccccC-CCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHH-
Confidence            479999999999999999999997642222 2233444433344555 67788999999986422111 00000 0000 


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ....+..+|++++++|++++.+..+..+.+.+...     ..++++|+||+|+....
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~-----~~~~ilv~NK~Dl~~~~  308 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR-----GRASVVVFNKWDLVVHR  308 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSTTG
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCCch
Confidence            01123446999999999877777665554444432     26899999999998654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.67  E-value=4.6e-16  Score=123.20  Aligned_cols=120  Identities=16%  Similarity=0.228  Sum_probs=81.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccc-----------------------------ccccCCCCcceeeEEEEEEEeCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAF-----------------------------KSRASSSGVTSTCEMQRTVLKDG   69 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~~   69 (174)
                      +..+|+++|.+++|||||+|.|++....                             .......+.|.......+.+ .+
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~  110 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR  110 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CC
Confidence            3479999999999999999999754110                             00011224555555555555 67


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHHhhhhcCcEE
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMI  142 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~~  142 (174)
                      ..+.++||||+.+           +...+...+..+|++++|+|++++       +.....+.+..+... +   .++++
T Consensus       111 ~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~---~~~iI  175 (483)
T 3p26_A          111 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G---IHNLI  175 (483)
T ss_dssp             CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T---CCCEE
T ss_pred             ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C---CCcEE
Confidence            8899999999976           344444556778999999999865       345555555544442 2   14799


Q ss_pred             EEEeCcCCCCCC
Q 030624          143 VVFTGGDELEDN  154 (174)
Q Consensus       143 iv~tk~D~~~~~  154 (174)
                      +|+||+|+....
T Consensus       176 vviNK~Dl~~~~  187 (483)
T 3p26_A          176 IAMNKMDNVDWS  187 (483)
T ss_dssp             EEEECGGGGTTC
T ss_pred             EEEECcCcccch
Confidence            999999998643

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.67  E-value=7.8e-16  Score=109.44  Aligned_cols=117  Identities=21%  Similarity=0.127  Sum_probs=64.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      +..+|+++|.+|+|||||+|.+++........  . .+.......... ++  ..+.+|||||..+           +..
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~--~-t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~   97 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYT--P-TVFERYMVNLQV-KGKPVHLHIWDTAGQDD-----------YDR   97 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-------C--C-CCCEEEEEEEEE-TTEEEEEEEEEC-------------------
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCC--C-ccceeEEEEEEE-CCEEEEEEEEECCCchh-----------hhH
Confidence            34789999999999999999999865322111  1 111111122223 33  3688999999775           233


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....++..+|++++|+|.+++.+...  ..++..+....   ...|+++|+||+|+...
T Consensus        98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  153 (214)
T 2j1l_A           98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKD  153 (214)
T ss_dssp             -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSC
T ss_pred             HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhcc
Confidence            33446678899999999985433222  23555555432   12689999999999765

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.67  E-value=1.8e-16  Score=123.15  Aligned_cols=127  Identities=20%  Similarity=0.185  Sum_probs=83.8

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      +.....+|+++|+.|+|||||+|+|++....... ...+.|.........+.....+.+|||||+.++............
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHH
Confidence            3445689999999999999999999987642222 234455555566666633348999999999876543222222222


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                          ..+..+|++++|+|+  .....+..+++.+.+..     .|+++|+||+|+....
T Consensus       109 ----~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~-----~piIvV~NK~Dl~~~~  156 (423)
T 3qq5_A          109 ----RVFYRADCGILVTDS--APTPYEDDVVNLFKEME-----IPFVVVVNKIDVLGEK  156 (423)
T ss_dssp             ----HHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTT-----CCEEEECCCCTTTTCC
T ss_pred             ----HHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcC-----CCEEEEEeCcCCCCcc
Confidence                345677999999998  45566777877777652     6999999999998764

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.67  E-value=7e-16  Score=117.96  Aligned_cols=124  Identities=16%  Similarity=0.220  Sum_probs=85.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .-..+|+++|.+++|||||+|+|++.... . ...+..|.......+.+ .+..+.++||||+.+..........++...
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~-v-~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~  146 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTGTESE-A-AEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAV  146 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHSBCCC-G-GGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhCCCCc-c-cCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence            33478999999999999999999997642 2 24456777777666666 788999999999998655555566667766


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHHHHHH-HHHHHHHhhh-hcCcEEEEEeCcCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKK-IFDYMIVVFTGGDEL  151 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l-~~l~~~~~~~-~~~~~~iv~tk~D~~  151 (174)
                      ++.+    |++++|+|+.+++  .+.+.+ ..|... +.. ..+|.++++||.|..
T Consensus       147 i~~a----d~il~vvD~~~p~--~~~~~i~~EL~~~-~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          147 ARTC----NLLFIILDVNKPL--HHKQIIEKELEGV-GIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             HHHC----SEEEEEEETTSHH--HHHHHHHHHHHHT-TEEETCCCCCEEEEECSSS
T ss_pred             HHhc----CccccccccCccH--HHHHHHHHHHHHh-hHhhccCChhhhhhHhhhh
Confidence            6655    9999999998543  222222 233332 332 235788999999974

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.66  E-value=4.3e-16  Score=110.01  Aligned_cols=118  Identities=20%  Similarity=0.098  Sum_probs=76.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCc--EEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      .+..+|+++|.+|+|||||++.+++.......   .+.+.......... ++.  .+.++||||..+           +.
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~   92 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVMV-DGKPVNLGLWDTAGLED-----------YD   92 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-C---CCCSEEEEEEEEEC-C-CEEEEEEEEECCSGG-----------GT
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc---CCeecceeEEEEEE-CCEEEEEEEEECCCchh-----------hH
Confidence            44589999999999999999999976532121   11122222222223 333  456999999865           23


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ......+..+|++++|+|.+++.+....  .++..+....   ...|+++|+||+|+...
T Consensus        93 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  149 (204)
T 4gzl_A           93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD  149 (204)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTC
T ss_pred             HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccc
Confidence            3444577889999999999854333332  4555555542   22699999999999765

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.66  E-value=6.6e-17  Score=114.97  Aligned_cols=117  Identities=14%  Similarity=0.067  Sum_probs=73.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE--EEEEEEeC-----------CcEEEEEeCCCCCCCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLKD-----------GQVVNVIDTPGLFDFSAG   86 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~-----------~~~~~~iDtpG~~~~~~~   86 (174)
                      ..+|+++|++|+|||||+|+|++......    ...|....  ...+.+..           ...+.+|||||..+    
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~----   96 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER----   96 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH----
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCcC----CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh----
Confidence            47899999999999999999998653211    11222211  12222312           35689999999542    


Q ss_pred             hHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh--hcCcEEEEEeCcCCCCC
Q 030624           87 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED  153 (174)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~~~  153 (174)
                             +...+...+..+|++++|+|+++..+...  ...++.......  ...|+++|+||+|+...
T Consensus        97 -------~~~~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~  156 (217)
T 2f7s_A           97 -------FRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQ  156 (217)
T ss_dssp             -------HHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred             -------HHhHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence                   44445556778899999999984322222  112233222111  23689999999999653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.66  E-value=4.6e-16  Score=109.51  Aligned_cols=117  Identities=19%  Similarity=0.128  Sum_probs=76.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ...+|+++|.+|+|||||++.+++...............   ...... .+  ..+.++||||..+           +..
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~   88 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY---IADIEV-DGKQVELALWDTAGQED-----------YDR   88 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCC---EEEEEE-TTEEEEEEEECCCCSGG-----------GTT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceE---EEEEEE-CCEEEEEEEEECCCchh-----------HHH
Confidence            347899999999999999999998664322111111111   112233 33  3688999999765           223


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+..+|++++|+|.++.-+...  ..++..+.... .  ..|+++|+||+|+...
T Consensus        89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~piilv~nK~Dl~~~  144 (201)
T 2gco_A           89 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-P--NVPIILVGNKKDLRQD  144 (201)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-T--TCCEEEEEECGGGTTC
T ss_pred             HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEecHHhhcC
Confidence            33456788999999999985322222  34555555542 1  2699999999999765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.66  E-value=3.7e-15  Score=103.45  Aligned_cols=122  Identities=17%  Similarity=0.224  Sum_probs=76.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+..+|+++|++|+|||||+|+|++...+..  ...+.|.......+.+ ++..+.++||||..+......  ...+...
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~   79 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIG--NWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARD   79 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEE--ECTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSH--HHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccc--CCCCeeccceEEEEEe-CCcEEEEEECCCcCccccccH--HHHHHHH
Confidence            3558999999999999999999998754322  1233344444444555 678899999999987532211  1111111


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      .. ....+|++++++|.+ .+ .....++..+..   .  ..|+++|.||+|+..
T Consensus        80 ~~-~~~~~~~~i~v~d~~-~~-~~~~~~~~~~~~---~--~~piilv~nK~Dl~~  126 (188)
T 2wjg_A           80 YI-INEKPDLVVNIVDAT-AL-ERNLYLTLQLME---M--GANLLLALNKMDLAK  126 (188)
T ss_dssp             HH-HHHCCSEEEEEEEGG-GH-HHHHHHHHHHHT---T--TCCEEEEEECHHHHH
T ss_pred             HH-hccCCCEEEEEecch-hH-HHHHHHHHHHHh---c--CCCEEEEEEhhhccc
Confidence            11 113469999999987 32 112333333322   2  268999999999854

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.66  E-value=3.7e-16  Score=111.17  Aligned_cols=117  Identities=14%  Similarity=0.030  Sum_probs=77.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE-EEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      ....+|+++|.+|+|||||++.+++.......    ..|...... ..... ....+.+|||||...           +.
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~   89 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETY----VPTVFENYTACLETEEQRVELSLWDTSGSPY-----------YD   89 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEEC--CEEEEEEEEECCSGG-----------GT
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCc----CCeeeeeEEEEEEECCEEEEEEEEECCCCHh-----------HH
Confidence            34589999999999999999999987642221    122222211 12221 234688999999875           23


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      .....++..+|++++|+|.++.-+...  ..|++.+.... .  ..|+++|.||+|+..
T Consensus        90 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~--~~piilv~nK~Dl~~  145 (214)
T 3q3j_B           90 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-P--STRVLLIGCKTDLRT  145 (214)
T ss_dssp             TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-T--TSEEEEEEECGGGGG
T ss_pred             HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEChhhcc
Confidence            344457788999999999985443333  45666666653 2  269999999999965

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.66  E-value=2.7e-16  Score=109.12  Aligned_cols=116  Identities=16%  Similarity=0.078  Sum_probs=75.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ...+|+++|++|+|||||+|.+++.......    ..|..... ...... ....+.+|||||....           ..
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~   70 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEIDTQRIELSLWDTSGSPYY-----------DN   70 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEECSSCEEEEEEEEECCSGGG-----------TT
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEEEECCEEEEEEEEECCCChhh-----------hh
Confidence            4589999999999999999999986532111    11211111 122221 1246899999997652           22


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ....++..+|++++|+|.+++.+...  ..++..+.+.. .  ..|+++|.||+|+..
T Consensus        71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~--~~piilv~nK~Dl~~  125 (184)
T 1m7b_A           71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-P--NTKMLLVGCKSDLRT  125 (184)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-T--TCEEEEEEECGGGGG
T ss_pred             hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-C--CCCEEEEEEcchhhc
Confidence            23446788999999999985433232  34555555542 1  269999999999974

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.65  E-value=5.7e-17  Score=115.75  Aligned_cols=122  Identities=20%  Similarity=0.108  Sum_probs=75.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      .....+|+++|.+|+|||||+|.++............+.+.......... ....+.++||||.......          
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~----------   80 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGL----------   80 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCC----------
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHH----------
Confidence            34458999999999999999999654332211112222233222222211 2346899999997653221          


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                       ...++..+|++++|+|.++..+... ..++..+.....   ..|+++|+||+|+...
T Consensus        81 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~  134 (221)
T 3gj0_A           81 -RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKDR  134 (221)
T ss_dssp             -CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSSC
T ss_pred             -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCccccc
Confidence             2234567899999999985433222 455555555431   2699999999998754

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.65  E-value=3.9e-16  Score=124.48  Aligned_cols=119  Identities=14%  Similarity=0.192  Sum_probs=83.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccc--cc------------------cCCCCcceeeEEEEEEEeCCcEEEEEeCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFK--SR------------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTP   78 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~--~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtp   78 (174)
                      +.++|+++|++|+|||||+|+|+......  .+                  ....+.|.........+ .+..+.+||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP   90 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP   90 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence            34899999999999999999996211000  00                  00123344444555666 77889999999


Q ss_pred             CCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           79 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        79 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      |+.++.           ..+...+..+|++++|+|++++....+...+..+...   .  .|+++++||+|+...+
T Consensus        91 G~~df~-----------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~---~--iPiivviNK~Dl~~~~  150 (528)
T 3tr5_A           91 GHADFT-----------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR---H--TPIMTFINKMDRDTRP  150 (528)
T ss_dssp             CSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT---T--CCEEEEEECTTSCCSC
T ss_pred             CchhHH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEeCCCCcccc
Confidence            998743           2233455677999999999988888887776655443   2  6999999999997654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.65  E-value=7e-16  Score=122.01  Aligned_cols=119  Identities=18%  Similarity=0.255  Sum_probs=82.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccc-----ccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAF-----KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK   92 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~-----~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~   92 (174)
                      .+..+|+++|+.++|||||+++|++....     .......+.|.........+ .+..+.++||||+.+          
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~~----------   85 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHAD----------   85 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHH----------
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChHH----------
Confidence            44589999999999999999999986510     01112234555555555555 677899999999753          


Q ss_pred             HHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           93 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        93 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                       +...+...+..+|++++|+|++++....+.+.+..+... +    .|.++++||+|+...
T Consensus        86 -~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-~----ip~IvviNK~Dl~~~  140 (482)
T 1wb1_A           86 -LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF-N----IPIIVVITKSDNAGT  140 (482)
T ss_dssp             -HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCBCEEEECTTSSCH
T ss_pred             -HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc-C----CCEEEEEECCCcccc
Confidence             444445567788999999999878888888887765543 1    467999999999863

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.65  E-value=2.3e-16  Score=111.65  Aligned_cols=122  Identities=16%  Similarity=0.091  Sum_probs=76.2

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEe-CCcEEEEEeCCCCCCCCCChHHH
Q 030624           13 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFV   90 (174)
Q Consensus        13 ~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~   90 (174)
                      ++.......+|+++|++|+|||||+|.+++......    ...|..... ..+... ....+.+|||||....       
T Consensus        21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------   89 (205)
T 1gwn_A           21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPEN----YVPTVFENYTASFEIDTQRIELSLWDTSGSPYY-------   89 (205)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSS----CCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG-------
T ss_pred             CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCC----cCCccceeEEEEEEECCEEEEEEEEeCCCcHhh-------
Confidence            444445568999999999999999999998654211    111221111 122221 1246899999997652       


Q ss_pred             HHHHHHHHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           91 GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                          ......++..+|++++|+|.+++.+...  ..|+..+.+.. .  ..|+++|.||+|+..
T Consensus        90 ----~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~--~~piilv~nK~Dl~~  146 (205)
T 1gwn_A           90 ----DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-P--NTKMLLVGCKSDLRT  146 (205)
T ss_dssp             ----TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-T--TCEEEEEEECGGGGG
T ss_pred             ----hHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-C--CCCEEEEEechhhcc
Confidence                2223446788999999999985433222  34555555542 1  268999999999974

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.65  E-value=1.4e-15  Score=114.98  Aligned_cols=116  Identities=13%  Similarity=0.042  Sum_probs=74.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|.+|+|||||++.|++......     .+|.........+ .+..+.++||||.....           ....
T Consensus       165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~~~  227 (329)
T 3o47_A          165 EMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKIR-----------PLWR  227 (329)
T ss_dssp             SEEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----C-----------CSHH
T ss_pred             cceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEEec-CcEEEEEEECCCCHhHH-----------HHHH
Confidence            35899999999999999999998764221     1244444455555 67889999999976532           2233


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .++..+|++++|+|+++.-+... ..++..+..... ....|+++|+||+|+...
T Consensus       228 ~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~  281 (329)
T 3o47_A          228 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNA  281 (329)
T ss_dssp             HHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred             HHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc-cCCCeEEEEEECccCCcc
Confidence            45567899999999975444333 222222222111 113689999999999765

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.65  E-value=1.8e-15  Score=118.47  Aligned_cols=120  Identities=18%  Similarity=0.213  Sum_probs=82.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------ccCCCCcceeeEEEEEEEe
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLK   67 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~   67 (174)
                      .....+++++|+.++|||||++.|++......                             .....+.|.......+.+ 
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-   92 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-   92 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-
Confidence            34458999999999999999999965421000                             001134566666666666 


Q ss_pred             CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCC-------HHHHHHHHHHHHHHhhhhcCc
Q 030624           68 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS-------QEEEAALHSLQTLFGKKIFDY  140 (174)
Q Consensus        68 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~-------~~~~~~l~~l~~~~~~~~~~~  140 (174)
                      .+..+.++||||+.+           +.+.+...+..+|++++|+|++++..       ..+.+.+..+... +   .++
T Consensus        93 ~~~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~-~---v~~  157 (439)
T 3j2k_7           93 EKKHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-G---VKH  157 (439)
T ss_pred             CCeEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc-C---CCe
Confidence            677899999999875           34444445667899999999986643       4566665544443 1   134


Q ss_pred             EEEEEeCcCCCC
Q 030624          141 MIVVFTGGDELE  152 (174)
Q Consensus       141 ~~iv~tk~D~~~  152 (174)
                      +++++||+|+..
T Consensus       158 iIvviNK~Dl~~  169 (439)
T 3j2k_7          158 LIVLINKMDDPT  169 (439)
T ss_pred             EEEEeecCCCcc
Confidence            899999999964

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.65  E-value=9.6e-16  Score=107.36  Aligned_cols=118  Identities=21%  Similarity=0.176  Sum_probs=73.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI   94 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~   94 (174)
                      .+..+|+++|.+|+|||||+|++++.......    ..|..... ..... .+  ..+.++||||..+    ..    ..
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~----~~----~~   92 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY----DPTLESTYRHQATI-DDEVVSMEILDTAGQED----TI----QR   92 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC----CTTCCEEEEEEEEE-TTEEEEEEEEECCCCCC----CH----HH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCccc----CCCCCceEEEEEEE-CCEEEEEEEEECCCCCc----cc----ch
Confidence            34589999999999999999999987542221    11111111 12223 33  4588999999885    11    11


Q ss_pred             HHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .    .++..+|++++|+|++++-+... ..+++.+...... ...|+++|+||+|+...
T Consensus        93 ~----~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~  147 (196)
T 2atv_A           93 E----GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHS  147 (196)
T ss_dssp             H----HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGG
T ss_pred             h----hhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccc
Confidence            1    22334599999999984332222 4455555554321 23689999999999753

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.64  E-value=8.1e-18  Score=118.32  Aligned_cols=120  Identities=20%  Similarity=0.204  Sum_probs=73.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      ....+|+++|.+|+|||||+|+|++.......  ....+.......+.+ ++  ..+.++||||......          
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------   97 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT----------   97 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHH--HHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCC----------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHH----------
Confidence            34589999999999999999999986532221  112222333333434 33  4689999999776332          


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                       .....+..+|++++|+|+++..+... ..++..+......  ..|+++|+||+|+...
T Consensus        98 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~  153 (199)
T 3l0i_B           98 -ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK  153 (199)
T ss_dssp             -CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC--
T ss_pred             -HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCcc
Confidence             22345678899999999985433222 3444444433221  3689999999998654

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.64  E-value=3.2e-16  Score=125.60  Aligned_cols=134  Identities=20%  Similarity=0.327  Sum_probs=79.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCccee-eEEE-----------------------------------
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST-CEMQ-----------------------------------   62 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~-~~~~-----------------------------------   62 (174)
                      ...+|+++|.+|+|||||+|+|++.............|.. ..+.                                   
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~  143 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF  143 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence            3479999999999999999999998743100111111111 0000                                   


Q ss_pred             -EEEEeCC---cEEEEEeCCCCCCCCCChHHHHH--HHHHHHHhccCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHHhh
Q 030624           63 -RTVLKDG---QVVNVIDTPGLFDFSAGSEFVGK--EIVKCIGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGK  135 (174)
Q Consensus        63 -~~~~~~~---~~~~~iDtpG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~il~v~~~~~-~~~~~~~~~l~~l~~~~~~  135 (174)
                       ...+ ..   ..+.+|||||+.+....  ...+  .+...+..++..+|++++|+|+++ .....+..+++.+...   
T Consensus       144 ~~~~~-~~~ll~~l~lIDTPG~~~~~~~--~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---  217 (550)
T 2qpt_A          144 MCAQL-PNQVLESISIIDTPGILSGAKQ--RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH---  217 (550)
T ss_dssp             EEEEC-CCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---
T ss_pred             eEEec-cccccCCEEEEECcCCCCcchh--HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---
Confidence             0000 00   35889999999863211  0110  022333344556799999999985 3566667776655432   


Q ss_pred             hhcCcEEEEEeCcCCCCCChhhHHHHh
Q 030624          136 KIFDYMIVVFTGGDELEDNDETLEDYL  162 (174)
Q Consensus       136 ~~~~~~~iv~tk~D~~~~~~~~~~~~~  162 (174)
                      .  .++++|+||+|+...  ..+.+.+
T Consensus       218 ~--~pvilVlNK~Dl~~~--~el~~~~  240 (550)
T 2qpt_A          218 E--DKIRVVLNKADMVET--QQLMRVY  240 (550)
T ss_dssp             G--GGEEEEEECGGGSCH--HHHHHHH
T ss_pred             C--CCEEEEEECCCccCH--HHHHHHH
Confidence            1  589999999999865  3444433

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.64  E-value=1.8e-16  Score=109.48  Aligned_cols=117  Identities=20%  Similarity=0.110  Sum_probs=71.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE-EEEE-eCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      +..+|+++|++|+|||||++++++.......    ..|...... .... .....+.++||||..+..           .
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~   71 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDY----VPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN-----------R   71 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CTTT-----------T
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCeeeeeEEEEEEECCEEEEEEEEECCCChhhh-----------h
Confidence            3489999999999999999999976532111    111111110 0111 023346699999987632           3


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+..+|++++|+|.+++.+...  ..++..+.....   ..|+++|+||+|+...
T Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  127 (182)
T 3bwd_D           72 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRDD  127 (182)
T ss_dssp             TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC
T ss_pred             hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhcC
Confidence            33456778899999999985433333  245666655432   3699999999998765

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.64  E-value=1.1e-14  Score=111.22  Aligned_cols=127  Identities=19%  Similarity=0.113  Sum_probs=82.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ...+++++|++|+|||||+|.|++.... .+ .....|.......... ....+.++||||+.+..........  ....
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~-~~-~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~--~~~~  240 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPE-IA-SYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIE--KQAI  240 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCE-EE-CCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHH--HHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCc-cC-CCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHH--HHHH
Confidence            3479999999999999999999997732 22 1223344444444434 5677899999999764322111111  1122


Q ss_pred             HhccCCceEEEEEEeCCCCC--CHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRF--SQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~--~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ......+|++++|+|+++..  +... ..++..+....+   ..|+++|+||+|+...
T Consensus       241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~  295 (357)
T 2e87_A          241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADE  295 (357)
T ss_dssp             HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCH
T ss_pred             HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCCh
Confidence            23445689999999987443  4444 566666665443   2699999999999764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.64  E-value=7.7e-16  Score=107.41  Aligned_cols=121  Identities=10%  Similarity=0.110  Sum_probs=70.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ...+|+++|++|+|||||+|.|++....... .....+...     .+ ....+.+|||||........       ...+
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~-~~~~~~~~~-----~~-~~~~~~l~Dt~G~~~~~~~~-------~~~~  112 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAA-----DY-DGSGVTLVDFPGHVKLRYKL-------SDYL  112 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCCH-------HHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCccc-ccCCCceee-----ee-cCCeEEEEECCCCchHHHHH-------HHHH
Confidence            4479999999999999999999987632211 111111111     11 45678899999998743221       1222


Q ss_pred             HhccCCceEEEEEEeCC-CCCCHHH-HHHHHHHHHHHhh--hhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVR-SRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~-~~~~~~~-~~~l~~l~~~~~~--~~~~~~~iv~tk~D~~~~  153 (174)
                      ......+|++++|+|.+ +.-+... ..++..+......  ....|+++|+||+|+...
T Consensus       113 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  171 (193)
T 2ged_A          113 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  171 (193)
T ss_dssp             HHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             HhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence            22334579999999997 2211111 2333333322111  113689999999999865

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.63  E-value=1.3e-15  Score=108.28  Aligned_cols=122  Identities=10%  Similarity=0.186  Sum_probs=74.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ....+|+++|++|+|||||+++|++...... ......+....     + ....+.++||||+....       ..+...
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-~~~~~~~~~~~-----~-~~~~~~l~Dt~G~~~~~-------~~~~~~   75 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAAD-----Y-DGSGVTLVDFPGHVKLR-------YKLSDY   75 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEETT-----G-GGSSCEEEECCCCGGGT-------HHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-eeecCceEEEE-----e-eCceEEEEECCCcHHHH-------HHHHHH
Confidence            3458999999999999999999998763211 11112222111     1 44578899999997631       112223


Q ss_pred             HHhccCCceEEEEEEeCC-C--CCCHHHHHHHHHHHHHHhh--hhcCcEEEEEeCcCCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVR-S--RFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~-~--~~~~~~~~~l~~l~~~~~~--~~~~~~~iv~tk~D~~~~~  154 (174)
                      +......+|++++|+|.+ +  .+... ..++..+......  ....|+++|+||+|+....
T Consensus        76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  136 (218)
T 1nrj_B           76 LKTRAKFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR  136 (218)
T ss_dssp             HHHHGGGEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             HHhccccCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence            333234479999999998 3  33222 3343333332211  1236899999999998764

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.63  E-value=4.8e-15  Score=110.24  Aligned_cols=139  Identities=14%  Similarity=0.145  Sum_probs=79.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccc--CCCCcc-----------------------e-e--------------
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRA--SSSGVT-----------------------S-T--------------   58 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~--~~~~~t-----------------------~-~--------------   58 (174)
                      ...+|+++|.+|+|||||+|+|++......+.  ....++                       + .              
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            34799999999999999999999987432211  000011                       0 0              


Q ss_pred             ---------eEEEEEEEeCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccCCceEEE-EEEeCCCCCCHHHH-HH
Q 030624           59 ---------CEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVL-VVFSVRSRFSQEEE-AA  125 (174)
Q Consensus        59 ---------~~~~~~~~~~~~~~~~iDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il-~v~~~~~~~~~~~~-~~  125 (174)
                               .............+.+|||||+.....  ..+.....+...+..++..++.++ +|+|+++.+...+. .+
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~  184 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence                     000011111236799999999986321  112222334444444555666555 78899766655543 33


Q ss_pred             HHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624          126 LHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  163 (174)
Q Consensus       126 l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~  163 (174)
                      ++.+..   .  ..|+++|+||+|+.... ....++++
T Consensus       185 ~~~~~~---~--~~~~i~V~NK~Dl~~~~-~~~~~~~~  216 (299)
T 2aka_B          185 AKEVDP---Q--GQRTIGVITKLDLMDEG-TDARDVLE  216 (299)
T ss_dssp             HHHHCT---T--CSSEEEEEECGGGSCTT-CCCHHHHT
T ss_pred             HHHhCC---C--CCeEEEEEEccccCCCC-chHHHHHh
Confidence            333321   1  26999999999998653 22344444

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.63  E-value=5.8e-15  Score=115.47  Aligned_cols=119  Identities=13%  Similarity=0.156  Sum_probs=80.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc--ccc------------cc-----------------CCCCcceeeEEEEEEEe
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRA--FKS------------RA-----------------SSSGVTSTCEMQRTVLK   67 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~--~~~------------~~-----------------~~~~~t~~~~~~~~~~~   67 (174)
                      ...+++++|+.++|||||+|+|++...  +..            +.                 ...+.|.........+ 
T Consensus        23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~-  101 (434)
T 1zun_B           23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST-  101 (434)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-
T ss_pred             CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec-
Confidence            347999999999999999999986431  000            00                 0012343333334444 


Q ss_pred             CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624           68 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus        68 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                      ....+.+|||||+.+           +...+...+..+|++++|+|++++....+.+++..+... +   .+++++|+||
T Consensus       102 ~~~~~~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~---~~~iIvviNK  166 (434)
T 1zun_B          102 AKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLL-G---IKHIVVAINK  166 (434)
T ss_dssp             SSEEEEEEECCCSGG-----------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-T---CCEEEEEEEC
T ss_pred             CCceEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCeEEEEEEc
Confidence            567899999999875           222233345778999999999878877777777655443 2   1468999999


Q ss_pred             cCCCCC
Q 030624          148 GDELED  153 (174)
Q Consensus       148 ~D~~~~  153 (174)
                      +|+...
T Consensus       167 ~Dl~~~  172 (434)
T 1zun_B          167 MDLNGF  172 (434)
T ss_dssp             TTTTTS
T ss_pred             CcCCcc
Confidence            999864

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.63  E-value=1.8e-15  Score=117.10  Aligned_cols=116  Identities=16%  Similarity=0.161  Sum_probs=81.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      ..+|+++|+.++|||||+++|++......              .....+.|.......+.. .+..+.++||||+.+   
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~---   78 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD---   78 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH---
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHH---
Confidence            47899999999999999999987421000              001223444443333333 567899999999864   


Q ss_pred             ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCc-EEEEEeCcCCCC
Q 030624           86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELE  152 (174)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~iv~tk~D~~~  152 (174)
                              +...+...+..+|++++|+|++++....+.+.+..+...   .  .| +++++||+|+..
T Consensus        79 --------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~---~--vp~iivviNK~Dl~~  133 (397)
T 1d2e_A           79 --------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI---G--VEHVVVYVNKADAVQ  133 (397)
T ss_dssp             --------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCCEEEEEECGGGCS
T ss_pred             --------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCeEEEEEECcccCC
Confidence                    444445567889999999999878878877777555442   1  35 789999999975

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.63  E-value=2.9e-15  Score=104.31  Aligned_cols=117  Identities=25%  Similarity=0.176  Sum_probs=72.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      +..+|+++|.+|+|||||++.+++.... ..   ...|..... ..... +.  ..+.++||||.......         
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~---------   85 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTKRFI-SE---YDPNLEDTYSSEETV-DHQPVHLRVMDTADLDTPRNC---------   85 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCC-SC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CCCT---------
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhCCCC-cc---cCCCccceeeEEEEE-CCEEEEEEEEECCCCCcchhH---------
Confidence            3489999999999999999999986632 21   112222111 12222 32  35789999998764321         


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh-hhcCcEEEEEeCcCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE  152 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~~iv~tk~D~~~  152 (174)
                         ..++..+|++++|+|.+++-+... ..++..+...... ....|+++|+||+|+..
T Consensus        86 ---~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  141 (187)
T 3c5c_A           86 ---ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ  141 (187)
T ss_dssp             ---HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred             ---HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence               123456799999999985433332 3455555554321 12368999999999864

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.63  E-value=3.5e-15  Score=120.92  Aligned_cols=119  Identities=16%  Similarity=0.224  Sum_probs=83.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccc--------------c---------------CCCCcceeeEEEEEEEeCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------A---------------SSSGVTSTCEMQRTVLKDG   69 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~--------------~---------------~~~~~t~~~~~~~~~~~~~   69 (174)
                      +..+|+++|++|+|||||+|.|++.......              .               ...+.|.......+.+ .+
T Consensus       166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~~  244 (611)
T 3izq_1          166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR  244 (611)
T ss_dssp             CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-SS
T ss_pred             CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-CC
Confidence            3579999999999999999999876321000              0               0124455555555555 67


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHHhhhhcCcEE
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMI  142 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~~  142 (174)
                      ..+.+|||||+.+           +...+...+..+|++|+|+|++++       ....+.+.+..+... +   .++++
T Consensus       245 ~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-g---i~~iI  309 (611)
T 3izq_1          245 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G---IHNLI  309 (611)
T ss_dssp             CEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-T---CCEEE
T ss_pred             ceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-C---CCeEE
Confidence            8899999999976           566666778899999999999843       334555555444432 2   14699


Q ss_pred             EEEeCcCCCCC
Q 030624          143 VVFTGGDELED  153 (174)
Q Consensus       143 iv~tk~D~~~~  153 (174)
                      +|+||+|+...
T Consensus       310 VVvNKiDl~~~  320 (611)
T 3izq_1          310 IAMNKMDNVDW  320 (611)
T ss_dssp             EEEECTTTTTT
T ss_pred             EEEecccccch
Confidence            99999999863

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.63  E-value=1.5e-15  Score=104.50  Aligned_cols=112  Identities=20%  Similarity=0.134  Sum_probs=71.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      +..+|+++|.+|+|||||++.+++..... .....+ ..  ....... ++  ..+.+|||||...            . 
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~--~~~~~~~-~~~~~~l~i~Dt~G~~~------------~-   67 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQ--YKKEMLV-DGQTHLVLIREEAGAPD------------A-   67 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SE--EEEEEEE-TTEEEEEEEEECSSSCC------------H-
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-ee--EEEEEEE-CCEEEEEEEEECCCCch------------h-
Confidence            45899999999999999999999866432 111111 11  1222333 33  3578999999875            1 


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhh-hcCcEEEEEeCcCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDEL  151 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~~iv~tk~D~~  151 (174)
                         .++..+|++++|+|.+++.+... ..+++.+....... ...|+++|.||+|+.
T Consensus        68 ---~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  121 (178)
T 2iwr_A           68 ---KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS  121 (178)
T ss_dssp             ---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred             ---HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence               12334699999999985443333 34444555543211 236899999999984

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.63  E-value=2.4e-15  Score=119.98  Aligned_cols=119  Identities=16%  Similarity=0.205  Sum_probs=79.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccc--cc------------------cCCCCcceeeEEEEEEEeCCcEEEEEeCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFK--SR------------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTP   78 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~--~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtp   78 (174)
                      +.++|+++|++|+|||||+++|+......  .+                  ....+.|.......+.+ ++..+.+||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTP   90 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTP   90 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECC
Confidence            34899999999999999999998632110  00                  00122333333444555 67889999999


Q ss_pred             CCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           79 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        79 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      |+.++.           ......+..+|++++|+|++++.......++..+...   .  .|+++++||+|+...+
T Consensus        91 G~~df~-----------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~---~--ipiivviNK~Dl~~~~  150 (529)
T 2h5e_A           91 GHEDFS-----------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR---D--TPILTFMNKLDRDIRD  150 (529)
T ss_dssp             CSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTT---T--CCEEEEEECTTSCCSC
T ss_pred             CChhHH-----------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHc---C--CCEEEEEcCcCCcccc
Confidence            998742           1222345677999999999877777666665444322   2  5899999999998764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.62  E-value=3.3e-15  Score=110.03  Aligned_cols=119  Identities=17%  Similarity=0.165  Sum_probs=73.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|++|+|||||+|+|++...+ .+ ..++.|.......+.+  +..+.++||||..+.....  ....+.+...
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~-~~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~--~~e~v~~~~~   76 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQR-VG-NWPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYS--PEAKVARDYL   76 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCC-CC-SSSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSS--HHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCc-cc-CCCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCC--hHHHHHHHHH
Confidence            378999999999999999999997633 22 2233444333222211  5678999999998753221  1111222111


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                       ....+|++++|+|+++ .. ....+...+.+     ...|+++++||+|+..
T Consensus        77 -~~~~~d~vi~V~D~t~-~e-~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~  121 (272)
T 3b1v_A           77 -LSQRADSILNVVDATN-LE-RNLYLTTQLIE-----TGIPVTIALNMIDVLD  121 (272)
T ss_dssp             -HTTCCSEEEEEEEGGG-HH-HHHHHHHHHHH-----TCSCEEEEEECHHHHH
T ss_pred             -hcCCCCEEEEEecCCc-hH-hHHHHHHHHHh-----cCCCEEEEEEChhhCC
Confidence             1247899999999983 21 12233333332     1269999999999854

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.62  E-value=1.2e-15  Score=118.27  Aligned_cols=117  Identities=15%  Similarity=0.159  Sum_probs=81.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc-------cccc--------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRA-------FKSR--------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~-------~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   83 (174)
                      ...+|+++|+.++|||||+++|++...       +...        ....+.|.......+.+ ....+.++||||+.+ 
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~-   87 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHAD-   87 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGG-
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHH-
Confidence            458999999999999999999987310       0000        00123344433333444 567899999999886 


Q ss_pred             CCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCc-EEEEEeCcCCCC
Q 030624           84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELE  152 (174)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~iv~tk~D~~~  152 (174)
                                +.......+..+|++++|+|++++....+.+++..+...   .  .| +++++||+|+..
T Consensus        88 ----------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~---~--ip~iivviNK~Dl~~  142 (405)
T 2c78_A           88 ----------YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV---G--VPYIVVFMNKVDMVD  142 (405)
T ss_dssp             ----------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT---T--CCCEEEEEECGGGCC
T ss_pred             ----------HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc---C--CCEEEEEEECccccC
Confidence                      233333456678999999999878777777777665543   1  35 889999999985

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.62  E-value=1.3e-15  Score=120.23  Aligned_cols=120  Identities=22%  Similarity=0.296  Sum_probs=80.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCC-CCCCChHHH-HHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFV-GKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~-~~~~~~~~~-~~~~~~~~   98 (174)
                      .+|+++|.+|+|||||+|+|++....... ...+.|.......+.+ ++..+.++||||+. ++....+.. ......  
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs-~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~--  319 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVT-DIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQ--  319 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCC-CSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHH--
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCccC-CCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHHH--
Confidence            68999999999999999999987532121 2234454444445555 67889999999998 543221111 111222  


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                        .+..+|++++|+|++++.+..+.++++.+    . .  .|+++|+||+|+...
T Consensus       320 --~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~-~--~piivV~NK~DL~~~  365 (482)
T 1xzp_A          320 --EIEKADIVLFVLDASSPLDEEDRKILERI----K-N--KRYLVVINKVDVVEK  365 (482)
T ss_dssp             --HHHHCSEEEEEEETTSCCCHHHHHHHHHH----T-T--SSEEEEEEECSSCCC
T ss_pred             --HhhcccEEEEEecCCCCCCHHHHHHHHHh----c-C--CCEEEEEECcccccc
Confidence              23456999999999877776665554332    1 2  689999999999754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.62  E-value=8e-16  Score=108.97  Aligned_cols=117  Identities=20%  Similarity=0.135  Sum_probs=75.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ...+|+++|.+|+|||||++.+++..............   ....... ++  ..+.+|||||.....           .
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~---~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~   72 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN---FSANVAV-DGQIVNLGLWDTAGQEDYS-----------R   72 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCC---EEEEEEC-SSCEEEEEEECCCCCCCCC-----------C
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcccee---EEEEEEE-CCEEEEEEEEECCCcHHHH-----------H
Confidence            34899999999999999999999765321111111111   1112223 33  378999999997633           1


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+..+|++++|+|.+++-+...  ..++..+.....   ..|+++|+||+|+...
T Consensus        73 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~  128 (212)
T 2j0v_A           73 LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRDD  128 (212)
T ss_dssp             --CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC
T ss_pred             HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhhC
Confidence            22346778899999999985433333  246666655422   2699999999998764

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.62  E-value=8.6e-15  Score=117.30  Aligned_cols=120  Identities=18%  Similarity=0.263  Sum_probs=88.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc--------------------cccccCCCCcceeeEEEEEEEeCCcEEEEEeCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRA--------------------FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTP   78 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~--------------------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtp   78 (174)
                      +.++|+|+|+.++|||||..+|+-...                    ....+...++|.......+.| ++..+.+||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP  108 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP  108 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC
Confidence            458899999999999999999862110                    001122335677777777888 88999999999


Q ss_pred             CCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCCh
Q 030624           79 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND  155 (174)
Q Consensus        79 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~  155 (174)
                      |+.++.       .++.+.++.+    |.+|+|+|+.++....++..++...+..     .|.++++||+|....+.
T Consensus       109 GHvDF~-------~Ev~raL~~~----DgAvlVvda~~GV~~qT~~v~~~a~~~~-----lp~i~fINK~Dr~~ad~  169 (548)
T 3vqt_A          109 GHQDFS-------EDTYRVLTAV----DSALVVIDAAKGVEAQTRKLMDVCRMRA-----TPVMTFVNKMDREALHP  169 (548)
T ss_dssp             CGGGCS-------HHHHHHHHSC----SEEEEEEETTTBSCHHHHHHHHHHHHTT-----CCEEEEEECTTSCCCCH
T ss_pred             CcHHHH-------HHHHHHHHhc----CceEEEeecCCCcccccHHHHHHHHHhC-----CceEEEEecccchhcch
Confidence            999964       4455665555    9999999999899999988877666653     68999999999987653

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.61  E-value=1.7e-14  Score=101.93  Aligned_cols=129  Identities=16%  Similarity=0.244  Sum_probs=73.3

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh---HH
Q 030624           13 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS---EF   89 (174)
Q Consensus        13 ~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~---~~   89 (174)
                      ++.+.+  .+++++|++|||||||+|.|++...........+.+....  ...+ .+ .+.++||||+.......   +.
T Consensus        21 ~~~~~~--~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~   94 (210)
T 1pui_A           21 LPSDTG--IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEV-AD-GKRLVDLPGYGYAEVPEEMKRK   94 (210)
T ss_dssp             SSCSCS--EEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEE-ET-TEEEEECCCCC------CCHHH
T ss_pred             CCCCCC--cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEe-cC-CEEEEECcCCcccccCHHHHHH
Confidence            566665  9999999999999999999998762111111122222221  1222 22 57799999986522111   11


Q ss_pred             HHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           90 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +...+.... .....++.+++++|.+.+....+.+..+.+...     ..|++++.||+|+...
T Consensus        95 ~~~~~~~~~-~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~~v~nK~D~~s~  152 (210)
T 1pui_A           95 WQRALGEYL-EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS-----NIAVLVLLTKADKLAS  152 (210)
T ss_dssp             HHHHHHHHH-HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCH
T ss_pred             HHHHHHHHH-HhhhcccEEEEEEECCCCCchhHHHHHHHHHHc-----CCCeEEEEecccCCCc
Confidence            111111222 223567999999999866665554444444322     2578899999998764

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.61  E-value=2.9e-15  Score=123.06  Aligned_cols=121  Identities=25%  Similarity=0.341  Sum_probs=81.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCccc--ccc-c-------------CCCCcceeeEEEEEEEeCCcEEEEEeCCCC
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAF--KSR-A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGL   80 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~--~~~-~-------------~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~   80 (174)
                      ....++|+++|++|+|||||+|+|++....  ..+ .             ...+.|.........+ ++..+.+|||||+
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~   85 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGH   85 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCC
Confidence            344589999999999999999999842100  000 0             0123344444445556 6788999999999


Q ss_pred             CCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           81 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      .++.       .+..+.+.    .+|++++|+|++++....+...+..+...   .  .|+++++||+|+...+
T Consensus        86 ~df~-------~~~~~~l~----~aD~~llVvDa~~g~~~~~~~~~~~~~~~---~--~p~ilviNK~Dl~~~~  143 (693)
T 2xex_A           86 VDFT-------VEVERSLR----VLDGAVTVLDAQSGVEPQTETVWRQATTY---G--VPRIVFVNKMDKLGAN  143 (693)
T ss_dssp             SSCC-------HHHHHHHH----HCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CCEEEEEECTTSTTCC
T ss_pred             cchH-------HHHHHHHH----HCCEEEEEECCCCCCcHHHHHHHHHHHHc---C--CCEEEEEECCCccccc
Confidence            8742       22333333    35999999999878888887776655543   2  6899999999998764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.61  E-value=2.1e-14  Score=111.45  Aligned_cols=121  Identities=17%  Similarity=0.289  Sum_probs=79.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEEEe--------------C--------CcEEEEE
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLK--------------D--------GQVVNVI   75 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~~i   75 (174)
                      +..+|+++|+.++|||||+++|++..... ......+.|....+......              .        ...+.+|
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            34899999999999999999999754211 11112233443332222110              0        1578999


Q ss_pred             eCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           76 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        76 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ||||+.+           +.......+..+|++++|+|++++. ...+.+.+..+... +.   +|+++++||+|+...+
T Consensus        87 DtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l-~~---~~iivv~NK~Dl~~~~  151 (408)
T 1s0u_A           87 DSPGHET-----------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL-GI---DKIIIVQNKIDLVDEK  151 (408)
T ss_dssp             ECSSHHH-----------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TC---CCEEEEEECTTSSCTT
T ss_pred             ECCCHHH-----------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc-CC---CeEEEEEEccCCCCHH
Confidence            9999653           4444445667889999999998776 67777777655432 21   4799999999998653

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.61  E-value=3.3e-15  Score=115.81  Aligned_cols=120  Identities=16%  Similarity=0.193  Sum_probs=77.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccc-ccC------------CCCcceee-----EEEEEEEeCCcEEEEEeCCC
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-RAS------------SSGVTSTC-----EMQRTVLKDGQVVNVIDTPG   79 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~-~~~------------~~~~t~~~-----~~~~~~~~~~~~~~~iDtpG   79 (174)
                      .+..+|+++|++|+|||||+|+|++...... +..            ....+...     ....... ....+.++||||
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiDtPG   84 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK-FLRRISFIDAPG   84 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE-EEEEEEEEECCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceeccccccccccccccc-ccceEEEEECCC
Confidence            3458999999999999999999998532110 000            00000000     0000000 125789999999


Q ss_pred             CCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           80 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +.+           +.......+..+|++++|+|++++. .....+++..+... +.   +|+++++||+|+...
T Consensus        85 h~~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~~  144 (403)
T 3sjy_A           85 HEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVSK  144 (403)
T ss_dssp             CGG-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH
T ss_pred             cHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccch
Confidence            765           3334444556789999999998776 66677777666554 22   489999999999865

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.61  E-value=8.8e-15  Score=101.54  Aligned_cols=134  Identities=17%  Similarity=0.169  Sum_probs=74.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHH----
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK----   96 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~----   96 (174)
                      .+|+++|++|+|||||+|++++.... .. ...+.+...  ....+ .  .+.++||||+.............+..    
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~-~~~~~t~~~--~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   74 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RG-KRPGVTRKI--IEIEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   74 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCS-SS-SSTTCTTSC--EEEEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCc-cC-CCCCcccee--EEEec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence            57999999999999999999987632 22 122333322  22223 2  68899999976533222211222222    


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHHHHHHHH--------HHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS--------LQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  163 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~--------l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~  163 (174)
                      .+......++++++++|.. .+......+...        +...... ...|+++|+||+|+........+++.+
T Consensus        75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~  147 (190)
T 2cxx_A           75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRE-LDIPTIVAVNKLDKIKNVQEVINFLAE  147 (190)
T ss_dssp             HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHH-TTCCEEEEEECGGGCSCHHHHHHHHHH
T ss_pred             HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHh-cCCceEEEeehHhccCcHHHHHHHHHH
Confidence            2222245567888888876 332221222211        1111111 126999999999998753223444433

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.61  E-value=1.1e-14  Score=111.44  Aligned_cols=125  Identities=15%  Similarity=0.170  Sum_probs=75.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      ++++++|++|+|||||+|.|++......  .....|.......+.+ .+..+.++||||+....  .......+...+. 
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~~~~~--~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~l--p~~lve~f~~tl~-  253 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLTQKVD--TKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGI--PPQIVDAFFVTLS-  253 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSSC--CGGGHHHHHHHHH-
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCcccc--CCcccccCCEEEEEEE-CCEEEEEEeCCCchhcC--CHHHHHHHHHHHH-
Confidence            3599999999999999999999764221  2233444333444555 56788999999986521  1223333333333 


Q ss_pred             ccCCceEEEEEEeCCCCCC--HHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFS--QEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~--~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+..+|++++|+|++++.+  ... ..+.+.+... +.. ..|+++|.||+|+...
T Consensus       254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~~-~~p~ilV~NK~Dl~~~  307 (364)
T 2qtf_A          254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GVS-GKPILVTLNKIDKING  307 (364)
T ss_dssp             GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TCC-SCCEEEEEECGGGCCS
T ss_pred             HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-CcC-CCCEEEEEECCCCCCc
Confidence            4677899999999974421  111 2233334433 211 2589999999999865

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.61  E-value=4.2e-15  Score=116.28  Aligned_cols=118  Identities=23%  Similarity=0.309  Sum_probs=76.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc-ccc-c---------------------------ccCCCCcceeeEEEEEEEeCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRR-AFK-S---------------------------RASSSGVTSTCEMQRTVLKDG   69 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~-~~~-~---------------------------~~~~~~~t~~~~~~~~~~~~~   69 (174)
                      +..+++++|+.++|||||+++|++.. .+. .                           .....+.|.......+.+ .+
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~   83 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KK   83 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SS
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CC
Confidence            34899999999999999999998641 010 0                           001233455555455555 67


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHHhhhhcCcEE
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMI  142 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~~  142 (174)
                      ..+.+|||||+.+           +...+...+..+|++++|+|+++.       ......+.+..+... +   .++++
T Consensus        84 ~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~-~---~~~ii  148 (435)
T 1jny_A           84 YFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-G---LDQLI  148 (435)
T ss_dssp             CEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-T---CTTCE
T ss_pred             eEEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHc-C---CCeEE
Confidence            7899999999987           444455677899999999999864       333444444433332 1   13689


Q ss_pred             EEEeCcCCCC
Q 030624          143 VVFTGGDELE  152 (174)
Q Consensus       143 iv~tk~D~~~  152 (174)
                      +++||+|+..
T Consensus       149 vviNK~Dl~~  158 (435)
T 1jny_A          149 VAVNKMDLTE  158 (435)
T ss_dssp             EEEECGGGSS
T ss_pred             EEEEcccCCC
Confidence            9999999986

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.61  E-value=7.9e-15  Score=120.43  Aligned_cols=127  Identities=20%  Similarity=0.236  Sum_probs=82.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCccc--ccc--------------cCCCCcceeeEEEEEEEeCCcEEEEEeCC
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAF--KSR--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTP   78 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~--~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtp   78 (174)
                      .+..+.++|+++|+.|+|||||+++|+.....  ..+              ....+.|.........+ ++..+.+||||
T Consensus         7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTP   85 (691)
T 1dar_A            7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTP   85 (691)
T ss_dssp             CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCC
T ss_pred             CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECc
Confidence            33445689999999999999999999832100  000              00123444455555556 67889999999


Q ss_pred             CCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhH
Q 030624           79 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL  158 (174)
Q Consensus        79 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~  158 (174)
                      |+.++       ..+..+.    +..+|++++|+|++++....+...+..+...   .  .|+++++||+|+...+....
T Consensus        86 G~~df-------~~~~~~~----l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~---~--~p~ivviNKiD~~~~~~~~~  149 (691)
T 1dar_A           86 GHVDF-------TIEVERS----MRVLDGAIVVFDSSQGVEPQSETVWRQAEKY---K--VPRIAFANKMDKTGADLWLV  149 (691)
T ss_dssp             SSTTC-------HHHHHHH----HHHCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCEEEEEECTTSTTCCHHHH
T ss_pred             Cccch-------HHHHHHH----HHHCCEEEEEEECCCCcchhhHHHHHHHHHc---C--CCEEEEEECCCcccCCHHHH
Confidence            99862       1223333    3345999999999878888777666554442   2  68999999999987643333

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.60  E-value=1e-14  Score=101.33  Aligned_cols=114  Identities=21%  Similarity=0.139  Sum_probs=73.7

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHH
Q 030624           16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE   93 (174)
Q Consensus        16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~   93 (174)
                      +..+..+|+++|.+|+|||||+|.+++.......    ..|.......+.+ ++  ..+.+|||||....          
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~----~~t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~----------   80 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE----SPEGGRFKKEIVV-DGQSYLLLIRDEGGPPEL----------   80 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC----CTTCEEEEEEEEE-TTEEEEEEEEECSSSCCH----------
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc----CCCcceEEEEEEE-CCEEEEEEEEECCCChhh----------
Confidence            4455689999999999999999999876533211    1122222233333 44  35678999998762          


Q ss_pred             HHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624           94 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus        94 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                       .     ++..+|++++|+|.+++-+... ..++..+..... ....|+++|.||+|+.
T Consensus        81 -~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~  132 (184)
T 3ihw_A           81 -Q-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAIS  132 (184)
T ss_dssp             -H-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCB
T ss_pred             -h-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence             1     2234699999999985443333 445555544321 1236999999999984

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.60  E-value=1.9e-15  Score=118.91  Aligned_cols=118  Identities=19%  Similarity=0.226  Sum_probs=78.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc-cccc-------------cc---------------CCCCcceeeEEEEEEEeCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRR-AFKS-------------RA---------------SSSGVTSTCEMQRTVLKDG   69 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~-~~~~-------------~~---------------~~~~~t~~~~~~~~~~~~~   69 (174)
                      +..+|+++|+.++|||||+|+|++.. .+..             |.               ...+.|.......+.+ .+
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~   84 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK   84 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CC
Confidence            34789999999999999999998641 0000             00               0123455444445554 56


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCH-------HHHHHHHHHHHHHhhhhcCcEE
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQ-------EEEAALHSLQTLFGKKIFDYMI  142 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~-------~~~~~l~~l~~~~~~~~~~~~~  142 (174)
                      ..+.++||||+.+           +...+...+..+|++++|+|++++...       .+.+.+..+...   . .++++
T Consensus        85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~-v~~ii  149 (458)
T 1f60_A           85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---G-VRQLI  149 (458)
T ss_dssp             EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---T-CCEEE
T ss_pred             ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---C-CCeEE
Confidence            7899999999875           555555678899999999999854322       344444333321   1 13589


Q ss_pred             EEEeCcCCCC
Q 030624          143 VVFTGGDELE  152 (174)
Q Consensus       143 iv~tk~D~~~  152 (174)
                      +++||+|+..
T Consensus       150 vviNK~Dl~~  159 (458)
T 1f60_A          150 VAVNKMDSVK  159 (458)
T ss_dssp             EEEECGGGGT
T ss_pred             EEEEcccccc
Confidence            9999999984

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.60  E-value=1.1e-14  Score=111.28  Aligned_cols=128  Identities=21%  Similarity=0.286  Sum_probs=69.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCC-----CCcceeeEEEEEEEe-CC--cEEEEEeCCCCCCCCC------
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS-----SGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSA------   85 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~-----~~~t~~~~~~~~~~~-~~--~~~~~iDtpG~~~~~~------   85 (174)
                      ..+|+++|++|+|||||+|+|++...+..+...     ...|........... .+  ..+.++||||+.+...      
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~  116 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK  116 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence            467999999999999999999887655443211     112322222222221 22  2589999999955322      


Q ss_pred             -ChHHHHHHHHHHHHhc---------cCCceEEEEEEeC-CCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           86 -GSEFVGKEIVKCIGMA---------KDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        86 -~~~~~~~~~~~~~~~~---------~~~~~~il~v~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                       ..+.+...+..++...         ..++|+++|+++. ...+...+..+++.+.    ..  .|+++|+||+|+...
T Consensus       117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~----~~--~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----NK--VNIVPVIAKADTLTL  189 (361)
T ss_dssp             CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC----S---SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc----cC--CCEEEEEECCCCCCH
Confidence             2222233333333221         2346789999976 4477777776665542    22  589999999999865

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.60  E-value=1.9e-15  Score=104.90  Aligned_cols=117  Identities=17%  Similarity=0.164  Sum_probs=67.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE------eCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL------KDGQVVNVIDTPGLFDFSAGSEFVGKEI   94 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~~iDtpG~~~~~~~~~~~~~~~   94 (174)
                      .+|+++|++|+|||||++.+++......+.  ...|....+.....      .....+.++||||...           +
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~--~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~   69 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGM--QSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE-----------F   69 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC-------------CSEEEEEEEC---------CEEEEEEECSHHH-----------H
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCccCCC--cceeccEEeEEeeeccccCCCCceEEEEEecCCCHH-----------H
Confidence            689999999999999999999863211211  11222222222111      1345789999999754           1


Q ss_pred             HHHHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ......++.+++++++|+|.+++....+  ..|+..+....   ...|+++|.||+|+...
T Consensus        70 ~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~  127 (184)
T 2zej_A           70 YSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSDE  127 (184)
T ss_dssp             HTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCCH
T ss_pred             HHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCcccc
Confidence            1112223345699999999975422211  34554444432   12689999999998654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.60  E-value=1.3e-14  Score=112.77  Aligned_cols=120  Identities=17%  Similarity=0.276  Sum_probs=80.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEEEeC----------------------CcEEEEE
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKD----------------------GQVVNVI   75 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~----------------------~~~~~~i   75 (174)
                      +..+|+++|+.++|||||+++|++..... ......+.|....+....+..                      ...+.+|
T Consensus         9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   88 (410)
T 1kk1_A            9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   88 (410)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence            34789999999999999999999753211 111123334433333222210                      1578999


Q ss_pred             eCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           76 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        76 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ||||+.+           +.......+..+|++++|+|++++. ...+.+.+..+... +.   +++++++||+|+...
T Consensus        89 DtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~~~  152 (410)
T 1kk1_A           89 DAPGHEA-----------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVDK  152 (410)
T ss_dssp             ECSSHHH-----------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH
T ss_pred             ECCChHH-----------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCCCH
Confidence            9999653           3333444556779999999998776 67777777665543 21   478999999999864

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.59  E-value=3.3e-15  Score=114.52  Aligned_cols=102  Identities=15%  Similarity=0.221  Sum_probs=74.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+|+++|+.++|||||+++|+.     .     +.|.......+.+ .+..+.++||||+.++           ...+..
T Consensus        22 ~~i~iiG~~d~GKSTL~~~L~~-----~-----giTi~~~~~~~~~-~~~~i~iiDtPGh~~f-----------~~~~~~   79 (370)
T 2elf_A           22 ANVAIIGTEKSGRTSLAANLGK-----K-----GTSSDITMYNNDK-EGRNMVFVDAHSYPKT-----------LKSLIT   79 (370)
T ss_dssp             EEEEEEESTTSSHHHHHHTTSE-----E-----EEESSSEEEEECS-SSSEEEEEECTTTTTC-----------HHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh-----C-----CEEEEeeEEEEec-CCeEEEEEECCChHHH-----------HHHHHH
Confidence            3899999999999999999981     1     2333334444444 5678999999999873           222223


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcE-EEEEe-CcCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM-IVVFT-GGDE  150 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~iv~t-k~D~  150 (174)
                      .+..+|++++|+| +......+++++..+... +    .|. ++++| |+|+
T Consensus        80 ~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~-~----i~~~ivvvNNK~Dl  125 (370)
T 2elf_A           80 ALNISDIAVLCIP-PQGLDAHTGECIIALDLL-G----FKHGIIALTRSDST  125 (370)
T ss_dssp             HHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT-T----CCEEEEEECCGGGS
T ss_pred             HHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc-C----CCeEEEEEEeccCC
Confidence            3466799999999 767777788877666543 2    344 89999 9999

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.59  E-value=4.8e-17  Score=129.50  Aligned_cols=116  Identities=16%  Similarity=0.257  Sum_probs=82.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .++|+++|++|+|||||+++|++......  ...+.|.........+..+..+.+|||||+.++..           ...
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~-----------~~~   70 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA-----------MRA   70 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT-----------SBB
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH-----------HHH
Confidence            47899999999999999999997653222  22333443333333332456789999999887432           223


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+..+|++++|+|++++....+.+.+..+...   .  .|+++++||+|+...
T Consensus        71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~---~--vPiIVViNKiDl~~~  119 (537)
T 3izy_P           71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA---H--VPIVLAINKCDKAEA  119 (537)
T ss_dssp             SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT---T--CCEEECCBSGGGTTT
T ss_pred             HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc---C--CcEEEEEeccccccc
Confidence            456778999999999888888887776655543   2  589999999999754

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.58  E-value=2.8e-14  Score=108.77  Aligned_cols=139  Identities=17%  Similarity=0.163  Sum_probs=77.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccc--CCCCcce----------------------------------------
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA--SSSGVTS----------------------------------------   57 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~--~~~~~t~----------------------------------------   57 (174)
                      .++|+++|.+|+|||||+|+|+|......+.  .+..++.                                        
T Consensus        31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g  110 (353)
T 2x2e_A           31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  110 (353)
T ss_dssp             CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence            3689999999999999999999976432221  1110110                                        


Q ss_pred             -------eeEEEEEEEeCCcEEEEEeCCCCCCCCCC--hHHHHHHHHHHHHhcc-CCceEEEEEEeCCCCCCHHHHHHHH
Q 030624           58 -------TCEMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAK-DGIHAVLVVFSVRSRFSQEEEAALH  127 (174)
Q Consensus        58 -------~~~~~~~~~~~~~~~~~iDtpG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~il~v~~~~~~~~~~~~~~l~  127 (174)
                             ......+.......+.+|||||+......  .......+...+..++ ...++++++++++..+...+.  .+
T Consensus       111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~~  188 (353)
T 2x2e_A          111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--LK  188 (353)
T ss_dssp             TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--HH
T ss_pred             cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--HH
Confidence                   00001111112467999999999763221  2222223333333333 344667777787654544432  22


Q ss_pred             HHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624          128 SLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG  163 (174)
Q Consensus       128 ~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~  163 (174)
                      .+.......  .|+++|+||+|+.... ....++++
T Consensus       189 i~~~~~~~~--~~~i~V~NK~Dl~~~~-~~~~~~~~  221 (353)
T 2x2e_A          189 VAKEVDPQG--QRTIGVITKLDLMDEG-TDARDVLE  221 (353)
T ss_dssp             HHHHHCTTC--TTEEEEEECGGGSCTT-CCCHHHHT
T ss_pred             HHHHhCcCC--CceEEEeccccccCcc-hhHHHHHh
Confidence            333332222  6899999999998653 22344444

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.57  E-value=5.2e-14  Score=115.79  Aligned_cols=120  Identities=21%  Similarity=0.271  Sum_probs=80.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc-c-cccc--------------CCCCcceeeEEEEEEEeCC-------cEEEE
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRA-F-KSRA--------------SSSGVTSTCEMQRTVLKDG-------QVVNV   74 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~-~-~~~~--------------~~~~~t~~~~~~~~~~~~~-------~~~~~   74 (174)
                      .+.++|+++|+.|+|||||++.|+.... . ..+.              ...+.|.........| ++       ..+.+
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINI   86 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEE
Confidence            4458999999999999999999974311 0 0000              0123444444445555 44       78999


Q ss_pred             EeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           75 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        75 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      |||||+.++           ...+..++..+|++|+|+|++++....+...+..+...   .  .|+++++||+|+...+
T Consensus        87 iDTPG~~df-----------~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~---~--ip~ilviNKiD~~~~~  150 (704)
T 2rdo_7           87 IDTPGHVDF-----------TIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY---K--VPRIAFVNKMDRMGAN  150 (704)
T ss_pred             EeCCCccch-----------HHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc---C--CCEEEEEeCCCccccc
Confidence            999999873           22222334456999999999877777766665544332   2  5899999999997654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.57  E-value=3.9e-15  Score=104.56  Aligned_cols=117  Identities=20%  Similarity=0.200  Sum_probs=71.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+++++|++|||||||++.|++.......  ....+.......+.+ ++.  .+.++||||......           .
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~-----------~   70 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRR-----------I   70 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTC-----------C
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhh-----------h
Confidence            378999999999999999999987642221  111112222223334 443  567899999765321           1


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ....+..++++++|+|..+..+... ..++..+....  ....++++++||+|+..
T Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~  124 (199)
T 2f9l_A           71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH  124 (199)
T ss_dssp             CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGG
T ss_pred             hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECccccc
Confidence            1223456799999999884433222 34444444321  12368999999999864

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.57  E-value=2.6e-16  Score=124.41  Aligned_cols=116  Identities=16%  Similarity=0.231  Sum_probs=80.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +.++|+++|+.++|||||+++|++......  ...+.|.......+.+ ++..+.+|||||+.++...           .
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~--e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~-----------~   68 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASG--EAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSM-----------R   68 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBT--TBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTS-----------B
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccc--cCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHH-----------H
Confidence            347899999999999999999987543211  1122333333233333 4567899999999875322           2


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|++++..+.+.+.+..+...   .  .|+++++||+|+...
T Consensus        69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~---~--vPiIVviNKiDl~~~  118 (501)
T 1zo1_I           69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA---Q--VPVVVAVNKIDKPEA  118 (501)
T ss_dssp             CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT---T--CCEEEEEECSSSSTT
T ss_pred             HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhc---C--ceEEEEEEecccccc
Confidence            2356778999999999877777777766554432   2  589999999999754

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.57  E-value=3.9e-14  Score=116.50  Aligned_cols=130  Identities=15%  Similarity=0.166  Sum_probs=80.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC----------------------------------------------
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS----------------------------------------------   53 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~----------------------------------------------   53 (174)
                      .++|+++|..++|||||+|+|+|....+.+....                                              
T Consensus        51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g  130 (772)
T 3zvr_A           51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  130 (772)
T ss_dssp             CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence            3799999999999999999999987533331110                                              


Q ss_pred             ---CcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhc-cCCceEEEEEEeCCCCCCHHHH-HHH
Q 030624           54 ---GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMA-KDGIHAVLVVFSVRSRFSQEEE-AAL  126 (174)
Q Consensus        54 ---~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~il~v~~~~~~~~~~~~-~~l  126 (174)
                         +.+.......+..+....+.++||||+.....  ..+.....+.+.+..+ ...+|++++|+|++..+...+. .++
T Consensus       131 ~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll  210 (772)
T 3zvr_A          131 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  210 (772)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHH
T ss_pred             CCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHH
Confidence               00001111222232345689999999987432  1222222233333222 2678999999999866666665 454


Q ss_pred             HHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624          127 HSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus       127 ~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      +.+...     ..|+++|+||+|+..+.
T Consensus       211 ~~L~~~-----g~pvIlVlNKiDlv~~~  233 (772)
T 3zvr_A          211 KEVDPQ-----GQRTIGVITKLDLMDEG  233 (772)
T ss_dssp             HHHCTT-----CSSEEEEEECTTSSCTT
T ss_pred             HHHHhc-----CCCEEEEEeCcccCCcc
Confidence            444332     26999999999998753

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.32  E-value=3.3e-16  Score=110.40  Aligned_cols=119  Identities=18%  Similarity=0.052  Sum_probs=75.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE-eCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      .+..+|+++|.+|+|||||++.+++.........   .+.......... .....+.+|||||..+           +..
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~   93 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP---TVFDNYSANVMVDGKPVNLGLWDTAGQED-----------YDR   93 (204)
Confidence            3458999999999999999999987653211111   111111111111 0234566999999875           233


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+..+|++++|+|.+++.+...  ..++..+.....   ..|+++|+||+|+...
T Consensus        94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~  149 (204)
T 3th5_A           94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD  149 (204)
Confidence            33445677899999999875443333  256666655432   2689999999999754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.55  E-value=8e-14  Score=99.05  Aligned_cols=120  Identities=23%  Similarity=0.163  Sum_probs=71.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeeEEEEEEEeCCc--EEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      ...+|+++|.+|+|||||+|.+++... +.......+.+.  ....+.+ ++.  .+.++||+|...     .     ..
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~--~~~~i~~-~~~~~~l~~~Dt~g~~~-----~-----~~  102 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDT--YERTLMV-DGESATIILLDMWENKG-----E-----NE  102 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTE--EEEEEEE-TTEEEEEEEECCTTTTH-----H-----HH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceee--EEEEEEE-CCeeeEEEEeecCCCcc-----h-----hh
Confidence            347899999999999999999997432 211111111111  1222333 333  467899998653     1     11


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      .....++..+|++++|+|.+++-+... ..+...+.+... ....|+++|.||+|+..
T Consensus       103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~  159 (211)
T 2g3y_A          103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVR  159 (211)
T ss_dssp             HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGG
T ss_pred             hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhc
Confidence            122445677899999999985332222 234444443211 12368999999999864

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.55  E-value=1.7e-14  Score=116.40  Aligned_cols=119  Identities=18%  Similarity=0.221  Sum_probs=71.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccc-cc------------ccCCCCcceeeEEEEEEEeC----CcEEEEEeCCCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAF-KS------------RASSSGVTSTCEMQRTVLKD----GQVVNVIDTPGLFD   82 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~-~~------------~~~~~~~t~~~~~~~~~~~~----~~~~~~iDtpG~~~   82 (174)
                      -++++++|+.++|||||+++|+..... ..            .....+.|.........|..    ...+.+|||||+.+
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            478999999999999999999753210 00            00112344444444555531    25789999999986


Q ss_pred             CCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      +       ..++.+.+    ..+|++++|+|++++....+...+......   .  .|+++++||+|+...+
T Consensus        84 F-------~~ev~~~l----~~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~--ipiIvViNKiDl~~a~  139 (599)
T 3cb4_D           84 F-------SYEVSRSL----AACEGALLVVDAGQGVEAQTLANCYTAMEM---D--LEVVPVLNKIDLPAAD  139 (599)
T ss_dssp             G-------HHHHHHHH----HHCSEEEEEEETTTCCCTHHHHHHHHHHHT---T--CEEEEEEECTTSTTCC
T ss_pred             H-------HHHHHHHH----HHCCEEEEEEECCCCCCHHHHHHHHHHHHC---C--CCEEEeeeccCccccc
Confidence            2       22333333    345999999999888887776655444332   2  5899999999998754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.55  E-value=4.6e-14  Score=109.30  Aligned_cols=140  Identities=14%  Similarity=0.163  Sum_probs=79.2

Q ss_pred             ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC---cEEEEEeCCCCCCCC
Q 030624            8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG---QVVNVIDTPGLFDFS   84 (174)
Q Consensus         8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~iDtpG~~~~~   84 (174)
                      .++++++.+.|....++|+|+||+|||||+|+|+|.....................+.....   ..+.++|+||+....
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~  109 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQI  109 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-C
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhcc
Confidence            56788999999444499999999999999999999853211111101111111222222122   267999999998642


Q ss_pred             CCh---HH----HHHHHHHHHHhc---------cCC--ceE-EEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEE
Q 030624           85 AGS---EF----VGKEIVKCIGMA---------KDG--IHA-VLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  145 (174)
Q Consensus        85 ~~~---~~----~~~~~~~~~~~~---------~~~--~~~-il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~  145 (174)
                      ...   ..    +...+...+...         ...  +|+ ++|+.|+..++...+.++++.|..    .  .++++|+
T Consensus       110 ~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~----~--~~vI~Vi  183 (427)
T 2qag_B          110 NKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDS----K--VNIIPII  183 (427)
T ss_dssp             CHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCS----C--SEEEEEE
T ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhh----C--CCEEEEE
Confidence            211   11    122222222211         112  344 555557776788888777766652    2  5899999


Q ss_pred             eCcCCCCC
Q 030624          146 TGGDELED  153 (174)
Q Consensus       146 tk~D~~~~  153 (174)
                      ||+|.+.+
T Consensus       184 ~KtD~Lt~  191 (427)
T 2qag_B          184 AKADAISK  191 (427)
T ss_dssp             SCGGGSCH
T ss_pred             cchhccch
Confidence            99999876

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.55  E-value=3.1e-14  Score=110.41  Aligned_cols=136  Identities=15%  Similarity=0.105  Sum_probs=80.2

Q ss_pred             cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChH
Q 030624            9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE   88 (174)
Q Consensus         9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~   88 (174)
                      .+++++.+.+  ..++++|++|||||||+++|++..+....  ....|.......+.+.....+.++|+||+.+......
T Consensus       148 ~~i~lelk~g--~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~--~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~  223 (416)
T 1udx_A          148 RRLRLELMLI--ADVGLVGYPNAGKSSLLAAMTRAHPKIAP--YPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGK  223 (416)
T ss_dssp             EEEEEEECCS--CSEEEECCGGGCHHHHHHHHCSSCCEECC--CTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSC
T ss_pred             eeeeeEEcCC--CEEEEECCCCCcHHHHHHHHHcCCccccC--cccceecceeeEEEecCcceEEEEeccccccchhhhh
Confidence            4455555555  67999999999999999999998642221  1222333333334442237899999999976321111


Q ss_pred             HHHHHHHHHHHhccCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           89 FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+...+.+.    ..+++.+++++|++ .-... ...+.+.+..+...-..+|.++++||+|....
T Consensus       224 ~L~~~fl~~----~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~  284 (416)
T 1udx_A          224 GLGLEFLRH----IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE  284 (416)
T ss_dssp             CSCHHHHHH----HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred             hhhHHHHHH----HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence            111222222    34679999999996 21111 13333344433222123688999999998754

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.55  E-value=3.3e-14  Score=114.66  Aligned_cols=119  Identities=18%  Similarity=0.277  Sum_probs=74.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc-ccc-c-----------cCCCCcceeeEEEEEEEeC----CcEEEEEeCCCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRA-FKS-R-----------ASSSGVTSTCEMQRTVLKD----GQVVNVIDTPGLFD   82 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~-~~~-~-----------~~~~~~t~~~~~~~~~~~~----~~~~~~iDtpG~~~   82 (174)
                      .++++++|+.++|||||+++|+.... ... +           ....+.|.........|..    ...+.+|||||+.+
T Consensus         6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d   85 (600)
T 2ywe_A            6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD   85 (600)
T ss_dssp             EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence            47899999999999999999975311 000 0           0112334333333444421    24688999999987


Q ss_pred             CCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      +       ..++.+.    +..+|++++|+|++++....+...+......   .  .|+++++||+|+...+
T Consensus        86 F-------~~ev~r~----l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~---~--ipiIvviNKiDl~~a~  141 (600)
T 2ywe_A           86 F-------SYEVSRA----LAACEGALLLIDASQGIEAQTVANFWKAVEQ---D--LVIIPVINKIDLPSAD  141 (600)
T ss_dssp             G-------HHHHHHH----HHTCSEEEEEEETTTBCCHHHHHHHHHHHHT---T--CEEEEEEECTTSTTCC
T ss_pred             H-------HHHHHHH----HHhCCEEEEEEECCCCccHHHHHHHHHHHHC---C--CCEEEEEeccCccccC
Confidence            2       1223333    3456999999999888888776665444332   2  5899999999997654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.54  E-value=4.9e-14  Score=103.68  Aligned_cols=127  Identities=20%  Similarity=0.261  Sum_probs=75.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-----CcceeeEEEEEEEeC---CcEEEEEeCCCCCCCCCCh---HH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-----GVTSTCEMQRTVLKD---GQVVNVIDTPGLFDFSAGS---EF   89 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~-----~~t~~~~~~~~~~~~---~~~~~~iDtpG~~~~~~~~---~~   89 (174)
                      .+++++|+||||||||+|+|+|...+..|....     ..+............   ...+.++|+||+.......   ..
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~   82 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP   82 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence            689999999999999999999987666552211     111111111111101   2367999999997643211   11


Q ss_pred             HH----HHHHHHHHh----------ccCCceEEEEEEeC-CCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           90 VG----KEIVKCIGM----------AKDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        90 ~~----~~~~~~~~~----------~~~~~~~il~v~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +.    ..+......          ...++++.++++|. ++++++.+.+.++.+.+.      .++++|+||+|.+..
T Consensus        83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH
Confidence            11    112222111          23456888998885 468999997777766653      489999999999876

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.54  E-value=5.7e-14  Score=114.97  Aligned_cols=115  Identities=27%  Similarity=0.304  Sum_probs=80.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccc--ccccC--------------CCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAF--KSRAS--------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~--~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   83 (174)
                      .++++++|++|+|||||++.|++....  ..+..              ..+.+.........+ ....+.++||||+.++
T Consensus         9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~~f   87 (665)
T 2dy1_A            9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGDF   87 (665)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGGG
T ss_pred             CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCccch
Confidence            489999999999999999999854321  11100              012344444444445 6778999999998762


Q ss_pred             CCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624           84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                             .......+    ..+|.+++|+|+++++......+++.+...   .  .|+++++||+|+.
T Consensus        88 -------~~~~~~~l----~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~---~--ip~ilv~NKiD~~  139 (665)
T 2dy1_A           88 -------VGEIRGAL----EAADAALVAVSAEAGVQVGTERAWTVAERL---G--LPRMVVVTKLDKG  139 (665)
T ss_dssp             -------HHHHHHHH----HHCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCEEEEEECGGGC
T ss_pred             -------HHHHHHHH----hhcCcEEEEEcCCcccchhHHHHHHHHHHc---c--CCEEEEecCCchh
Confidence                   12333333    345999999999888888888777666553   2  5899999999997

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.54  E-value=2e-14  Score=118.16  Aligned_cols=120  Identities=18%  Similarity=0.196  Sum_probs=75.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcce-------------ee---------------------------
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS-------------TC---------------------------   59 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~-------------~~---------------------------   59 (174)
                      ..+|+++|.+|+|||||+|+|+|......+..  +.|.             ..                           
T Consensus        69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~--p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVN--PCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCC--TTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCC--CCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            37999999999999999999999875433321  1120             00                           


Q ss_pred             --------------EEEEEEEeCC---cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHH
Q 030624           60 --------------EMQRTVLKDG---QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE  122 (174)
Q Consensus        60 --------------~~~~~~~~~~---~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~  122 (174)
                                    ....+.++..   ..+.+|||||+.+...        ....+..++..+|++++|+|+++.++..+
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e  218 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGE  218 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHH
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhH
Confidence                          0000111000   3589999999875211        22333344567899999999987777776


Q ss_pred             HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          123 EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       123 ~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+.   +.... ...|+++|+||+|+...
T Consensus       219 ~~~l~---~~l~~-~~~~iiiVlNK~Dl~~~  245 (695)
T 2j69_A          219 RRYLE---NYIKG-RGLTVFFLVNAWDQVRE  245 (695)
T ss_dssp             HHHHH---HHTTT-SCCCEEEEEECGGGGGG
T ss_pred             HHHHH---HHHHh-hCCCEEEEEECcccccc
Confidence            55442   22111 12579999999998754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.53  E-value=4.8e-14  Score=98.48  Aligned_cols=117  Identities=21%  Similarity=0.215  Sum_probs=71.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+++++|++|||||||++.+++.......  ....+.......+.+ ++.  .+.++||||.......           
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~-----------   94 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAI-----------   94 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCC-----------
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhh-----------
Confidence            378999999999999999999987643221  122222222233334 443  3457999998763221           


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      +......++++++|+|..+..+... ..++..+....  ....++++++||+|+..
T Consensus        95 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~  148 (191)
T 1oix_A           95 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH  148 (191)
T ss_dssp             CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGG
T ss_pred             hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccccc
Confidence            1223456688999999874322222 23444443321  12368999999999864

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.53  E-value=1.5e-14  Score=116.81  Aligned_cols=115  Identities=17%  Similarity=0.248  Sum_probs=77.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-----------------CCcEEEEEeCCCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLFD   82 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~~iDtpG~~~   82 (174)
                      .++|+++|+.++|||||+++|++.......  ..+.|.........+.                 ....+.+|||||+.+
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e--~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAVASRE--AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCcccc--CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            478999999999999999999875432111  1112221111111110                 112589999999987


Q ss_pred             CCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      +....           ...+..+|++++|+|+++++...+.+.+..+...   .  .|+++++||+|+..
T Consensus        83 F~~~~-----------~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~---~--vPiIVViNKiDl~~  136 (594)
T 1g7s_A           83 FTTLR-----------KRGGALADLAILIVDINEGFKPQTQEALNILRMY---R--TPFVVAANKIDRIH  136 (594)
T ss_dssp             CTTSB-----------CSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGST
T ss_pred             HHHHH-----------HHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc---C--CeEEEEeccccccc
Confidence            54221           2345678999999999988888887777765542   2  58999999999964

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.52  E-value=4.2e-14  Score=106.37  Aligned_cols=115  Identities=20%  Similarity=0.112  Sum_probs=75.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcE--EEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV--VNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|.+|+|||||++.+++.......   .+.+.......... ++..  +.++||||....           ....
T Consensus       156 ~~i~i~G~~~~GKssli~~~~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~~~  220 (332)
T 2wkq_A          156 IKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDY-----------DRLR  220 (332)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCCSC---CCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGG-----------TTTG
T ss_pred             eEEEEECCCCCChHHHHHHHHhCCCCccc---CCcccceeEEEEEE-CCEEEEEEEEeCCCchhh-----------hHHH
Confidence            78999999999999999999876532121   11122212222223 4443  559999998752           2334


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|.+++.+..+.  .++..+.....   ..|+++|+||+|+...
T Consensus       221 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~  274 (332)
T 2wkq_A          221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD  274 (332)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTC
T ss_pred             HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccc
Confidence            4567889999999999854433332  45555655432   3699999999998654

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.52  E-value=6.2e-14  Score=118.98  Aligned_cols=119  Identities=17%  Similarity=0.180  Sum_probs=80.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   83 (174)
                      .+..+|+++|+.++|||||+++|++...-.              ......+.|.......+.. .+..+.+|||||+.+ 
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHed-  371 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHAD-  371 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHH-
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHH-
Confidence            345889999999999999999998741100              0011223343333333333 567899999999875 


Q ss_pred             CCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCc-EEEEEeCcCCCCC
Q 030624           84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELED  153 (174)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~iv~tk~D~~~~  153 (174)
                                +.......+..+|++++|+|++++....+.+++..+... +    .| +++++||+|+...
T Consensus       372 ----------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l-g----IP~IIVVINKiDLv~d  427 (1289)
T 3avx_A          372 ----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-G----VPYIIVFLNKCDMVDD  427 (1289)
T ss_dssp             ----------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH-T----CSCEEEEEECCTTCCC
T ss_pred             ----------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc-C----CCeEEEEEeecccccc
Confidence                      444455577889999999999878777777777665543 1    35 7899999999863

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.52  E-value=6.2e-14  Score=105.13  Aligned_cols=121  Identities=14%  Similarity=0.107  Sum_probs=75.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      +++++|.+|+||||+++.+.+...+.. .....+|.......+  .....+.+|||||..++....  +      .....
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~-~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~--l------~~~~y   69 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS--Y------DSERL   69 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGG-GTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS--H------HHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCc-cceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh--h------hhhhh
Confidence            478999999999999998876543221 112233443333332  244679999999999853211  0      11234


Q ss_pred             cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          102 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +++++++++|+|.++++......+.+.+.+........|++++.||+|+..+
T Consensus        70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~  121 (331)
T 3r7w_B           70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE  121 (331)
T ss_dssp             HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred             ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence            6788999999999866332223333333332111223689999999999765

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.52  E-value=1.8e-13  Score=106.16  Aligned_cols=128  Identities=20%  Similarity=0.247  Sum_probs=69.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCC----CCcceeeEEEEEEEe---CCcEEEEEeCCCCCCCCCCh---HH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGS---EF   89 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~----~~~t~~~~~~~~~~~---~~~~~~~iDtpG~~~~~~~~---~~   89 (174)
                      ...|+++|++|+|||||+|+|+|...+..+...    ...+...........   ....+.++||||+.......   ..
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~  110 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP  110 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence            467899999999999999999998754332110    011222111111110   12367899999998642211   11


Q ss_pred             HHH----HHHHH-------HHhcc--CCceEEEEEEeCC-CCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           90 VGK----EIVKC-------IGMAK--DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        90 ~~~----~~~~~-------~~~~~--~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +..    .+...       .+..+  +++|+++|++..+ ..++..+..+++.+..    .  .++++|+||+|+...
T Consensus       111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~----~--v~iIlVinK~Dll~~  182 (418)
T 2qag_C          111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----K--VNIIPLIAKADTLTP  182 (418)
T ss_dssp             HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT----T--SEEEEEEESTTSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc----c--CcEEEEEEcccCccH
Confidence            111    11111       12223  3456788887765 5788888777766542    2  589999999999864

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.51  E-value=4.2e-14  Score=111.51  Aligned_cols=118  Identities=19%  Similarity=0.205  Sum_probs=67.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc-cc-------------cc---------------cCCCCcceeeEEEEEEEeCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRA-FK-------------SR---------------ASSSGVTSTCEMQRTVLKDG   69 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~-~~-------------~~---------------~~~~~~t~~~~~~~~~~~~~   69 (174)
                      +..+|+++|+.++|||||++.|+.... +.             .|               ....+.|.......+.+ ++
T Consensus        42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~~  120 (467)
T 1r5b_A           42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EH  120 (467)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SS
T ss_pred             CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-CC
Confidence            457899999999999999999874210 00             00               01123454444444555 56


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC-------CHHHHHHHHHHHHHHhhhhcCcEE
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-------SQEEEAALHSLQTLFGKKIFDYMI  142 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~~  142 (174)
                      ..+.+|||||+.+           +...+...+..+|++++|+|++++.       ...+.+.+..+...   .. ++++
T Consensus       121 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~---~v-p~ii  185 (467)
T 1r5b_A          121 RRFSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GI-NHLV  185 (467)
T ss_dssp             EEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TC-SSEE
T ss_pred             eEEEEEECCCcHH-----------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc---CC-CEEE
Confidence            7899999999876           3333344567889999999998653       13444554433322   11 2489


Q ss_pred             EEEeCcCCCC
Q 030624          143 VVFTGGDELE  152 (174)
Q Consensus       143 iv~tk~D~~~  152 (174)
                      +++||+|+..
T Consensus       186 vviNK~Dl~~  195 (467)
T 1r5b_A          186 VVINKMDEPS  195 (467)
T ss_dssp             EEEECTTSTT
T ss_pred             EEEECccCCC
Confidence            9999999964

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.50  E-value=2.2e-13  Score=105.26  Aligned_cols=90  Identities=14%  Similarity=0.051  Sum_probs=45.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe--------------------C---CcEEEEEeCC
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------------------D---GQVVNVIDTP   78 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~---~~~~~~iDtp   78 (174)
                      +|+++|.+|+|||||+|+|++... ... ..++.|.........+.                    +   ...+.++|||
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~~~-~~~-~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp   79 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLVDV-EIA-NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC-ccc-CCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence            789999999999999999998762 111 11222322222211110                    1   2468999999


Q ss_pred             CCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC
Q 030624           79 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR  117 (174)
Q Consensus        79 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~  117 (174)
                      |+.++....    +.+.......+..+|++++|+|+++.
T Consensus        80 G~~~~a~~~----~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           80 GLVPGAHEG----RGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             -------------------CCCSSTTCSEEEEEEETTCC
T ss_pred             Ccccchhhh----hhHHHHHHHHHhcCCEEEEEEecccc
Confidence            997632211    11222223456889999999999753

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.50  E-value=1.4e-15  Score=122.92  Aligned_cols=119  Identities=18%  Similarity=0.197  Sum_probs=61.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccc--------------c---------------cCCCCcceeeEEEEEEEeCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKS--------------R---------------ASSSGVTSTCEMQRTVLKDG   69 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~~   69 (174)
                      ...+|+++|++++|||||+|.|++......              |               ....+.|.......+.+ .+
T Consensus       176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~~  254 (592)
T 3mca_A          176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-DK  254 (592)
T ss_dssp             CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-CC
Confidence            457899999999999999999964211000              0               01223455444444444 46


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC-----C--CHHHHHHHHHHHHHHhhhhcCcEE
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-----F--SQEEEAALHSLQTLFGKKIFDYMI  142 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-----~--~~~~~~~l~~l~~~~~~~~~~~~~  142 (174)
                      ..+.+|||||+.++           ...+...+..+|++|+|+|++++     +  ...+.+.+..+... +.   ++++
T Consensus       255 ~~i~iiDTPGh~~f-----------~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l-gi---p~iI  319 (592)
T 3mca_A          255 KIYEIGDAPGHRDF-----------ISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL-GI---SEIV  319 (592)
T ss_dssp             ----CCEEESSSEE-----------EEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-SC---CCEE
T ss_pred             eEEEEEECCChHHH-----------HHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-CC---CeEE
Confidence            78899999998863           11222345678999999999753     3  56666666555543 21   3589


Q ss_pred             EEEeCcCCCCC
Q 030624          143 VVFTGGDELED  153 (174)
Q Consensus       143 iv~tk~D~~~~  153 (174)
                      +|+||+|+...
T Consensus       320 vviNKiDl~~~  330 (592)
T 3mca_A          320 VSVNKLDLMSW  330 (592)
T ss_dssp             EEEECGGGGTT
T ss_pred             EEEeccccccc
Confidence            99999999763

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.48  E-value=5.1e-14  Score=112.79  Aligned_cols=121  Identities=17%  Similarity=0.141  Sum_probs=73.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE----EEEEe---CCcEEEEEeCCCCCCCCCChHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ----RTVLK---DGQVVNVIDTPGLFDFSAGSEFV   90 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~----~~~~~---~~~~~~~iDtpG~~~~~~~~~~~   90 (174)
                      ....+|+++|.+|+|||||+|++++...........+.+......    .....   ....+.++||||.........  
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~--  116 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ--  116 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH--
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH--
Confidence            345899999999999999999999876321111111111111000    00010   246799999999776432221  


Q ss_pred             HHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           91 GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        91 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                               .++.++|++++|+|+++ . .....++..+..... .  .|+++|.||+|+....
T Consensus       117 ---------~~l~~~d~ii~V~D~s~-~-~~~~~~~~~l~~~~~-~--~pvilV~NK~Dl~~~~  166 (535)
T 3dpu_A          117 ---------FFMTRSSVYMLLLDSRT-D-SNKHYWLRHIEKYGG-K--SPVIVVMNKIDENPSY  166 (535)
T ss_dssp             ---------HHHHSSEEEEEEECGGG-G-GGHHHHHHHHHHHSS-S--CCEEEEECCTTTCTTC
T ss_pred             ---------HHccCCcEEEEEEeCCC-c-hhHHHHHHHHHHhCC-C--CCEEEEEECCCccccc
Confidence                     22345799999999973 3 334667777766532 2  6999999999997643

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.47  E-value=1.3e-12  Score=107.74  Aligned_cols=121  Identities=26%  Similarity=0.311  Sum_probs=85.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccc--c-----c---------ccCCCCcceeeEEEEEEEeC------CcEEEEE
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAF--K-----S---------RASSSGVTSTCEMQRTVLKD------GQVVNVI   75 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~--~-----~---------~~~~~~~t~~~~~~~~~~~~------~~~~~~i   75 (174)
                      .+-++|+|+|+.++|||||..+|+-....  .     .         .+...++|.........|..      +..+.+|
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            44588999999999999999988632110  0     0         01223566666666666631      4579999


Q ss_pred             eCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           76 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        76 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ||||+.++.       .++.+.++.+    |++|+|+|+.+++...++..++...+..     .|.++++||+|....+
T Consensus        91 DTPGHvDF~-------~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~~-----lp~i~~iNKiDr~~a~  153 (709)
T 4fn5_A           91 DTPGHVDFT-------IEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKYG-----VPRIVYVNKMDRQGAN  153 (709)
T ss_dssp             CCCSCTTCH-------HHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHHT-----CCEEEEEECSSSTTCC
T ss_pred             eCCCCcccH-------HHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHcC-----CCeEEEEccccccCcc
Confidence            999999853       5566666666    9999999999899999988877666653     5889999999997764

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.47  E-value=1.2e-13  Score=115.63  Aligned_cols=117  Identities=23%  Similarity=0.315  Sum_probs=77.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccc--------------cCCCCcceeeEEEEEEEe---------------CC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK---------------DG   69 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------------~~   69 (174)
                      ..++|+++|+.|+|||||+++|+........              ....+.|.........|.               .+
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   97 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence            4578999999999999999999864211000              001223433333444442               14


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcC
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  149 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D  149 (174)
                      ..+.+|||||+.++.       .+..    .++..+|++++|+|+.++....+...+..+..   ..  .|+++++||+|
T Consensus        98 ~~i~liDTPG~~df~-------~~~~----~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~--~p~ilviNK~D  161 (842)
T 1n0u_A           98 FLINLIDSPGHVDFS-------SEVT----AALRVTDGALVVVDTIEGVCVQTETVLRQALG---ER--IKPVVVINKVD  161 (842)
T ss_dssp             EEEEEECCCCCCSSC-------HHHH----HHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TT--CEEEEEEECHH
T ss_pred             ceEEEEECcCchhhH-------HHHH----HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cC--CCeEEEEECCC
Confidence            578999999999843       1222    23445699999999998888887665543332   22  58899999999


Q ss_pred             CC
Q 030624          150 EL  151 (174)
Q Consensus       150 ~~  151 (174)
                      +.
T Consensus       162 ~~  163 (842)
T 1n0u_A          162 RA  163 (842)
T ss_dssp             HH
T ss_pred             cc
Confidence            86

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.46  E-value=1.3e-13  Score=96.35  Aligned_cols=119  Identities=23%  Similarity=0.174  Sum_probs=67.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeeEEEEEEEeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ..+|+++|.+|+|||||+|.+++... +.......+.+.  ....+.+ ++.  .+.++||+|.....   .     .  
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~l~~~Dt~~~~~~~---~-----~--   72 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDT--YERTLMV-DGESATIILLDMWENKGEN---E-----W--   72 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTE--EEEEEEE-TTEEEEEEEECCCCC-------C-----T--
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeE--EEEEEEE-CCeEEEEEEEEeccCcchh---h-----h--
Confidence            47999999999999999999986321 111111111111  1222333 343  45789999865410   0     0  


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ....++..+|++++|+|.+++-+... ..+...+.+.... ...|+++|.||+|+..
T Consensus        73 ~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~  128 (192)
T 2cjw_A           73 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVR  128 (192)
T ss_dssp             TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGG
T ss_pred             HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhc
Confidence            01122334699999999985433332 3444445443211 1268999999999864

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.45  E-value=5.9e-14  Score=114.41  Aligned_cols=118  Identities=18%  Similarity=0.256  Sum_probs=86.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC---Cccccc----ccC---------CCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG---RRAFKS----RAS---------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   84 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~---~~~~~~----~~~---------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~   84 (174)
                      ++|+|+|+.++|||||..+|+-   ......    +..         ..+.|.......+.| ++..+.+|||||+.++.
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSSTH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHHH
Confidence            6799999999999999998852   211100    000         015566666666777 78889999999999842


Q ss_pred             CChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCCh
Q 030624           85 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND  155 (174)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~  155 (174)
                             .++.+.+    +-+|++++|+|+.+++...++..++...+..     .|.++++||+|....+.
T Consensus        82 -------~Ev~raL----~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~-----lp~i~~INKmDr~~a~~  136 (638)
T 3j25_A           82 -------AEVYRSL----SVLDGAILLISAKDGVQAQTRILFHALRKMG-----IPTIFFINKIDQNGIDL  136 (638)
T ss_dssp             -------HHHHHHH----TTCSEEECCEESSCTTCSHHHHHHHHHHHHT-----CSCEECCEECCSSSCCS
T ss_pred             -------HHHHHHH----HHhCEEEEEEeCCCCCcHHHHHHHHHHHHcC-----CCeEEEEeccccccCCH
Confidence                   3344444    4459999999999899999988887776653     57899999999987653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.38  E-value=5e-12  Score=94.36  Aligned_cols=128  Identities=20%  Similarity=0.187  Sum_probs=63.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC-cccccccCC----CCcceeeEEEEEEEe---CCcEEEEEeCCCCCCCCC---ChH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGR-RAFKSRASS----SGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSA---GSE   88 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~-~~~~~~~~~----~~~t~~~~~~~~~~~---~~~~~~~iDtpG~~~~~~---~~~   88 (174)
                      ...|+++|++|+|||||+|.|++. ..+..+...    ...+...........   ....+.++||||+.....   ...
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~   97 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK   97 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence            367899999999999999999986 433333110    011211111122211   124689999999953211   001


Q ss_pred             HHHH----HHHHHHHh---------ccCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           89 FVGK----EIVKCIGM---------AKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        89 ~~~~----~~~~~~~~---------~~~~~~~il~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+..    .....+..         ...++++++|+++.+. +++..+.+.+   +... ..  .++++|+||.|+...
T Consensus        98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l---~~l~-~~--~~iilV~~K~Dl~~~  170 (301)
T 2qnr_A           98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFM---KAIH-NK--VNIVPVIAKADTLTL  170 (301)
T ss_dssp             THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHH---HHHT-TT--SCEEEEECCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHH---HHHH-hc--CCEEEEEEeCCCCCH
Confidence            1111    11111111         1234577888877643 4888775443   3332 22  489999999999764

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.29  E-value=2e-11  Score=99.11  Aligned_cols=128  Identities=19%  Similarity=0.172  Sum_probs=69.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCccc-ccccCCCCccee------------eE----------------------------
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAF-KSRASSSGVTST------------CE----------------------------   60 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~-~~~~~~~~~t~~------------~~----------------------------   60 (174)
                      .++++|++|||||||+++|+|...+ ..|.........            ..                            
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~  126 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA  126 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence            4999999999999999999998755 344322211110            00                            


Q ss_pred             -----------EEEEEEeCCcEEEEEeCCCCCCCC--CChHHHHHHHHHHHHhccCCc-eEEEEEEeCCCCCCHHHHHHH
Q 030624           61 -----------MQRTVLKDGQVVNVIDTPGLFDFS--AGSEFVGKEIVKCIGMAKDGI-HAVLVVFSVRSRFSQEEEAAL  126 (174)
Q Consensus        61 -----------~~~~~~~~~~~~~~iDtpG~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~il~v~~~~~~~~~~~~~~l  126 (174)
                                 ...........+.++|.||+....  .........+...+..+.... ..++++++++..+  .....+
T Consensus       127 ~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~--a~~~~l  204 (608)
T 3szr_A          127 GEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI--ATTEAL  204 (608)
T ss_dssp             CSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT--TTCHHH
T ss_pred             CCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh--ccHHHH
Confidence                       000111122458999999987632  223344556666666644444 4455555544222  233444


Q ss_pred             HHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          127 HSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       127 ~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +.+.......  .++++|+||+|++..
T Consensus       205 ~la~~v~~~g--~rtI~VlTK~Dlv~~  229 (608)
T 3szr_A          205 SMAQEVDPEG--DRTIGILTKPDLVDK  229 (608)
T ss_dssp             HHHHHHCSSC--CSEEEEEECGGGSSS
T ss_pred             HHHHHHhhcC--CceEEEecchhhcCc
Confidence            4455543222  589999999999865

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.28  E-value=1.1e-11  Score=94.14  Aligned_cols=139  Identities=10%  Similarity=0.101  Sum_probs=81.6

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEeCCcEEEEEeCCCCCC
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDGQVVNVIDTPGLFD   82 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~iDtpG~~~   82 (174)
                      +..+.++++++.+.+  ..++++||||||||||++.|+|...+..|............ ......+....++.+.+.+..
T Consensus        16 ~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p   93 (359)
T 3fvq_A           16 NTPVLNDISLSLDPG--EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP   93 (359)
T ss_dssp             TEEEEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred             CEEEEEeeEEEEcCC--CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence            345678899999999  99999999999999999999999877666432211110000 000000123445566665544


Q ss_pred             CCCChHHH-----------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHH
Q 030624           83 FSAGSEFV-----------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE  121 (174)
Q Consensus        83 ~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~  121 (174)
                      ..+..+.+                                         .++-...++..+.+++++|+- ..++.++..
T Consensus        94 ~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD-EPts~LD~~  172 (359)
T 3fvq_A           94 HLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD-EPFSALDEQ  172 (359)
T ss_dssp             TSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-STTTTSCHH
T ss_pred             CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe-CCcccCCHH
Confidence            32211111                                         233334445556778866553 344478887


Q ss_pred             HHHHH-HHHHHHHhhhhcCcEEEEEeC
Q 030624          122 EEAAL-HSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus       122 ~~~~l-~~l~~~~~~~~~~~~~iv~tk  147 (174)
                      .+..+ +.+.+...+.  ..++|++||
T Consensus       173 ~r~~l~~~l~~~~~~~--g~tvi~vTH  197 (359)
T 3fvq_A          173 LRRQIREDMIAALRAN--GKSAVFVSH  197 (359)
T ss_dssp             HHHHHHHHHHHHHHHT--TCEEEEECC
T ss_pred             HHHHHHHHHHHHHHhC--CCEEEEEeC
Confidence            75554 4566554332  467888888

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.27  E-value=8.2e-12  Score=95.55  Aligned_cols=136  Identities=18%  Similarity=0.118  Sum_probs=80.2

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   83 (174)
                      +..+.++++|+.+.+  ..++++|+||||||||++.|+|...+..|...........   ....+....++.+.|.+.+.
T Consensus        15 ~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~---~~~~~r~ig~VfQ~~~l~p~   89 (381)
T 3rlf_A           15 EVVVSKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND---TPPAERGVGMVFQSYALYPH   89 (381)
T ss_dssp             TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT---CCGGGSCEEEECTTCCCCTT
T ss_pred             CEEEEeeeEEEECCC--CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCC---CCHHHCCEEEEecCCcCCCC
Confidence            344678899999999  9999999999999999999999987766632221110000   00001234566677766654


Q ss_pred             CCChHHH-----------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHH
Q 030624           84 SAGSEFV-----------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE  122 (174)
Q Consensus        84 ~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~  122 (174)
                      .+..+.+                                         .++....++....+++++|+ ...+..++...
T Consensus        90 ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLL-DEPts~LD~~~  168 (381)
T 3rlf_A           90 LSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL-DEPLSNLDAAL  168 (381)
T ss_dssp             SCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEE-ESTTTTSCHHH
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEE-ECCCcCCCHHH
Confidence            3322211                                         22223333333556775554 33444788776


Q ss_pred             H-HHHHHHHHHHhhhhcCcEEEEEeC
Q 030624          123 E-AALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus       123 ~-~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                      + .+.+.|++...+.  ..++|++||
T Consensus       169 ~~~l~~~l~~l~~~~--g~tii~vTH  192 (381)
T 3rlf_A          169 RVQMRIEISRLHKRL--GRTMIYVTH  192 (381)
T ss_dssp             HHHHHHHHHHHHHHH--CCEEEEECS
T ss_pred             HHHHHHHHHHHHHhC--CCEEEEEEC
Confidence            4 4455555553332  367888888

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.27  E-value=2.1e-12  Score=94.78  Aligned_cols=44  Identities=25%  Similarity=0.282  Sum_probs=38.7

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      +..+.++++++.+.|  ..++++|+||||||||++.|+|...+..|
T Consensus        23 ~~~vL~~vsl~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G   66 (266)
T 4g1u_C           23 QQALINDVSLHIASG--EMVAIIGPNGAGKSTLLRLLTGYLSPSHG   66 (266)
T ss_dssp             TEEEEEEEEEEEETT--CEEEEECCTTSCHHHHHHHHTSSSCCSSC
T ss_pred             CeeEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence            345678899999999  99999999999999999999998877665

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.26  E-value=7e-12  Score=91.44  Aligned_cols=44  Identities=20%  Similarity=0.127  Sum_probs=38.5

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.++++|+++.|  ..++++|+||||||||++.|+|...+..|.
T Consensus        28 ~~vl~~vsl~i~~G--ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~   71 (256)
T 1vpl_A           28 KEILKGISFEIEEG--EIFGLIGPNGAGKTTTLRIISTLIKPSSGI   71 (256)
T ss_dssp             EEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             EEEEEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            34678889999999  999999999999999999999998776653

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.26  E-value=3.1e-12  Score=93.33  Aligned_cols=49  Identities=18%  Similarity=0.152  Sum_probs=32.8

Q ss_pred             CceEEEEEEeCCCC--CCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          104 GIHAVLVVFSVRSR--FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       104 ~~~~il~v~~~~~~--~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ++|++++|+|.+++  .+... ..++..+...... ...|+++|.||+|+...
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~-~~~piilV~NK~Dl~~~  213 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK-TKKPIVVVLTKCDEGVE  213 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHH-TTCCEEEEEECGGGBCH
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhcc-CCCCEEEEEEccccccc
Confidence            58999999999855  44443 4556555554221 22699999999998653

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.25  E-value=1e-11  Score=94.50  Aligned_cols=135  Identities=13%  Similarity=0.083  Sum_probs=82.1

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEE---EEeCCcEEEEEeCCCCCCC
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT---VLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~   83 (174)
                      +.++++|+.+.|  ..++++|+||||||||++.|+|...+..|...............   .. +....++.+.|.+...
T Consensus        43 aL~~vsl~i~~G--ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~-r~~Ig~v~Q~~~l~~~  119 (366)
T 3tui_C           43 ALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA-RRQIGMIFQHFNLLSS  119 (366)
T ss_dssp             EEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHH-HTTEEEECSSCCCCTT
T ss_pred             EEEeeEEEEcCC--CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH-hCcEEEEeCCCccCCC
Confidence            578899999999  99999999999999999999999877665322111100000000   00 1234566677766654


Q ss_pred             CCChHHH-----------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHH
Q 030624           84 SAGSEFV-----------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE  122 (174)
Q Consensus        84 ~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~  122 (174)
                      .+..+.+                                         .++....++..+.++++++ +..+++.+++..
T Consensus       120 ~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLL-lDEPTs~LD~~~  198 (366)
T 3tui_C          120 RTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL-CDQATSALDPAT  198 (366)
T ss_dssp             SCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEE-EESTTTTSCHHH
T ss_pred             CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE-EECCCccCCHHH
Confidence            3322211                                         2333344444466777554 455555888887


Q ss_pred             -HHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624          123 -EAALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus       123 -~~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                       ..+++.|++...+.  ..+++++||
T Consensus       199 ~~~i~~lL~~l~~~~--g~Tii~vTH  222 (366)
T 3tui_C          199 TRSILELLKDINRRL--GLTILLITH  222 (366)
T ss_dssp             HHHHHHHHHHHHHHS--CCEEEEEES
T ss_pred             HHHHHHHHHHHHHhC--CCEEEEEec
Confidence             55666666654332  367888888

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.24  E-value=1.8e-13  Score=104.78  Aligned_cols=123  Identities=19%  Similarity=0.215  Sum_probs=69.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccc----c-ccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFK----S-RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~----~-~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      .+++++|.+|+|||||+|+|++.....    . .....+.|....  ....  ...+.++||||+.+.....+.+..+..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~--~~~~--~~~~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLI--DIPL--DEESSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEE--EEES--SSSCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceE--EEEe--cCCeEEEeCCCcCcHHHHHHHhhHHHH
Confidence            689999999999999999999863211    1 111223333222  2222  334889999999875432332333333


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+. ....++.++|+++....+.......++.+..   .  ..|+++++||+|....
T Consensus       237 ~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~---~--~~~~~~v~nk~d~~~~  288 (368)
T 3h2y_A          237 KLIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVSG---G--RRAFTCHFSNRLTIHR  288 (368)
T ss_dssp             HHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEES---S--SEEEEEEECTTSCEEE
T ss_pred             HHhc-cccccCceEEEEcCCCEEEEcceEEEEEecC---C--CceEEEEecCcccccc
Confidence            2221 2456788888888742211111111222221   1  2589999999999865

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.24  E-value=6.3e-12  Score=90.64  Aligned_cols=42  Identities=21%  Similarity=0.148  Sum_probs=37.9

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      +.++++++++.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        20 ~L~~isl~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~   61 (235)
T 3tif_A           20 ALKNVNLNIKEG--EFVSIMGPSGSGKSTMLNIIGCLDKPTEGE   61 (235)
T ss_dssp             EEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             eEEeeeEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCceE
Confidence            678899999999  999999999999999999999988776653

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.24  E-value=2.1e-11  Score=92.61  Aligned_cols=45  Identities=20%  Similarity=0.204  Sum_probs=39.3

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      +..+.++++|+.+.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        27 ~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~   71 (355)
T 1z47_A           27 GARSVRGVSFQIREG--EMVGLLGPSGSGKTTILRLIAGLERPTKGD   71 (355)
T ss_dssp             STTCEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CCEEEeeeEEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCccE
Confidence            345778899999998  999999999999999999999998776653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.23  E-value=9.2e-14  Score=106.49  Aligned_cols=133  Identities=20%  Similarity=0.200  Sum_probs=75.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC-----cccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR-----RAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      .+++++|.+|+|||||+|+|++.     .....+ ...+.|.....  ...  +..+.++||||+.......+.+..+..
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~-~~~gtT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTS-YFPGTTLDMIE--IPL--ESGATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEE-ECTTSSCEEEE--EEC--STTCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeec-CCCCeEEeeEE--EEe--CCCeEEEeCCCcCcHHHHHHHHhHHHH
Confidence            57999999999999999999986     222122 22333433222  222  344799999999875432332322233


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCCh-hhHHHHhcc
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND-ETLEDYLGR  164 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~-~~~~~~~~~  164 (174)
                      ..+. ...++|.++|+++....+.......++.+..   .  ..++++++||+|...... ....+++++
T Consensus       238 ~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~---~--~~~~~~v~~k~d~~~~~~~~~~~~~~~~  301 (369)
T 3ec1_A          238 KIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIKG---G--RRSFVCYMANELTVHRTKLEKADSLYAN  301 (369)
T ss_dssp             HHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEES---S--SEEEEEEECTTSCEEEEEGGGHHHHHHH
T ss_pred             HHHh-cccccCceEEEEcCCceEEECCEEEEEEccC---C--CceEEEEecCCcccccccHHHHHHHHHH
Confidence            2221 1356799999998842211111111222221   1  258999999999975422 233444443

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.23  E-value=2.9e-11  Score=92.04  Aligned_cols=43  Identities=23%  Similarity=0.201  Sum_probs=38.1

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.+.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        17 ~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~   59 (359)
T 2yyz_A           17 KAVDGVSFEVKDG--EFVALLGPSGCGKTTTLLMLAGIYKPTSGE   59 (359)
T ss_dssp             EEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             EEEeeeEEEEcCC--CEEEEEcCCCchHHHHHHHHHCCCCCCccE
Confidence            4678899999998  999999999999999999999998776653

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.23  E-value=8.1e-12  Score=95.09  Aligned_cols=90  Identities=17%  Similarity=0.087  Sum_probs=54.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC----------------CcEEEEEeCCCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFDFS   84 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~~iDtpG~~~~~   84 (174)
                      .+++++|.+|+|||||+|+|++.... .. ..+..|.......+.+..                ...+.++||||+.++.
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~-v~-~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIE-AA-NYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCc-cc-CCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            68999999999999999999986521 11 112233333332333311                1468999999998742


Q ss_pred             CChHHHHHHHHHHHHhccCCceEEEEEEeCCC
Q 030624           85 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS  116 (174)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~  116 (174)
                      ...+.+...+...    ++++|++++|+|+++
T Consensus        81 ~~~~gl~~~fl~~----ir~ad~il~VvD~~~  108 (363)
T 1jal_A           81 SKGEGLGNKFLAN----IRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHGGGTCCHHHH----HHTCSEEEEEEECSC
T ss_pred             cccchHHHHHHHH----HHhcCeEEEEEecCC
Confidence            1111122223322    456799999999974

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.22  E-value=4.7e-11  Score=91.39  Aligned_cols=43  Identities=21%  Similarity=0.264  Sum_probs=38.2

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.+.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        17 ~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~   59 (372)
T 1g29_1           17 TAVREMSLEVKDG--EFMILLGPSGCGKTTTLRMIAGLEEPSRGQ   59 (372)
T ss_dssp             EEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             EEEeeeEEEEcCC--CEEEEECCCCcHHHHHHHHHHcCCCCCccE
Confidence            4677889999998  999999999999999999999998776664

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.22  E-value=5.8e-11  Score=84.96  Aligned_cols=43  Identities=21%  Similarity=0.139  Sum_probs=37.9

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++|+++.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        18 ~~l~~vsl~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~   60 (224)
T 2pcj_A           18 EILKGISLSVKKG--EFVSIIGASGSGKSTLLYILGLLDAPTEGK   60 (224)
T ss_dssp             EEEEEEEEEEETT--CEEEEEECTTSCHHHHHHHHTTSSCCSEEE
T ss_pred             eeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            4678889999999  999999999999999999999988766653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.21  E-value=3.3e-11  Score=91.83  Aligned_cols=44  Identities=23%  Similarity=0.217  Sum_probs=38.7

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.++++++.+.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        16 ~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~   59 (362)
T 2it1_A           16 FTALNNINLKIKDG--EFMALLGPSGSGKSTLLYTIAGIYKPTSGK   59 (362)
T ss_dssp             SEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             EEEEEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCCCceE
Confidence            34678899999998  999999999999999999999998776653

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.21  E-value=3e-11  Score=93.48  Aligned_cols=117  Identities=21%  Similarity=0.201  Sum_probs=69.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceee-EEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC-EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .++++|+||||||||+|+|+|...+..|......+... ............+.++|+||+......    ..++.+.+. 
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~----~~~~L~~~~-  145 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFP----PDTYLEKMK-  145 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCC----HHHHHHHTT-
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHH----HHHHHHHcC-
Confidence            89999999999999999999987766664433221110 111111111235789999998643211    222333222 


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                       ....+..++ ++.. +.......+...+...   .  +|+++|.||.|..
T Consensus       146 -L~~~~~~~~-lS~G-~~~kqrv~la~aL~~~---~--~p~~lV~tkpdll  188 (413)
T 1tq4_A          146 -FYEYDFFII-ISAT-RFKKNDIDIAKAISMM---K--KEFYFVRTKVDSD  188 (413)
T ss_dssp             -GGGCSEEEE-EESS-CCCHHHHHHHHHHHHT---T--CEEEEEECCHHHH
T ss_pred             -CCccCCeEE-eCCC-CccHHHHHHHHHHHhc---C--CCeEEEEecCccc
Confidence             223355554 6666 3455555555555443   2  6899999999875

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.20  E-value=2.3e-11  Score=93.44  Aligned_cols=90  Identities=18%  Similarity=0.182  Sum_probs=47.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC----------------CcEEEEEeCCCCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFDF   83 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~~iDtpG~~~~   83 (174)
                      ..+++++|.+|+|||||+|+|++... ... ..+..|.......+.+..                ...+.++||||+..+
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~-~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNSQA-SAE-NFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCc-ccc-CCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            38899999999999999999999753 111 223333333333333311                234899999999875


Q ss_pred             CCChHHHHHHHHHHHHhccCCceEEEEEEeCC
Q 030624           84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  115 (174)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  115 (174)
                      ....+.+...+..    .+..+|++++|+|+.
T Consensus       100 as~~~glg~~~l~----~ir~aD~Il~VvD~~  127 (396)
T 2ohf_A          100 AHNGQGLGNAFLS----HISACDGIFHLTRAF  127 (396)
T ss_dssp             -------CCHHHH----HHHTSSSEEEEEEC-
T ss_pred             cchhhHHHHHHHH----HHHhcCeEEEEEecC
Confidence            4332223223333    345669999999986

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.20  E-value=1.6e-11  Score=88.78  Aligned_cols=43  Identities=26%  Similarity=0.356  Sum_probs=37.8

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.+.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        20 ~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~   62 (240)
T 1ji0_A           20 HAIKGIDLKVPRG--QIVTLIGANGAGKTTTLSAIAGLVRAQKGK   62 (240)
T ss_dssp             EEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             eEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            3677889999998  999999999999999999999988776653

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.20  E-value=3.7e-11  Score=91.36  Aligned_cols=42  Identities=17%  Similarity=0.211  Sum_probs=37.8

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      +.++++++.+.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        20 vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~   61 (353)
T 1oxx_K           20 ALDNVNINIENG--ERFGILGPSGAGKTTFMRIIAGLDVPSTGE   61 (353)
T ss_dssp             EEEEEEEEECTT--CEEEEECSCHHHHHHHHHHHHTSSCCSEEE
T ss_pred             eEeceEEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence            667899999998  999999999999999999999998776664

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.19  E-value=1.1e-10  Score=85.02  Aligned_cols=43  Identities=16%  Similarity=0.217  Sum_probs=37.9

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++.+.+  ..++++|+||||||||++.|+|...+..|
T Consensus        18 ~~vl~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G   60 (253)
T 2nq2_C           18 NFLFQQLNFDLNKG--DILAVLGQNGCGKSTLLDLLLGIHRPIQG   60 (253)
T ss_dssp             TEEEEEEEEEEETT--CEEEEECCSSSSHHHHHHHHTTSSCCSEE
T ss_pred             CeEEEEEEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence            34678889999998  99999999999999999999998876555

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.19  E-value=2e-11  Score=89.35  Aligned_cols=44  Identities=18%  Similarity=0.224  Sum_probs=38.5

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.++++|+++.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        37 ~~vL~~vsl~i~~G--ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~   80 (263)
T 2olj_A           37 LEVLKGINVHIREG--EVVVVIGPSGSGKSTFLRCLNLLEDFDEGE   80 (263)
T ss_dssp             EEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             EEEEEeeEEEEcCC--CEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Confidence            34678899999999  999999999999999999999998776653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.19  E-value=1.3e-11  Score=90.95  Aligned_cols=42  Identities=17%  Similarity=0.128  Sum_probs=37.9

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      +.++++++++.|  ..++++|+||||||||++.|+|...+..|.
T Consensus        23 ~L~~isl~i~~G--e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~   64 (275)
T 3gfo_A           23 ALKGINMNIKRG--EVTAILGGNGVGKSTLFQNFNGILKPSSGR   64 (275)
T ss_dssp             EEEEEEEEEETT--SEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             EEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCeE
Confidence            788999999999  999999999999999999999988766653

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.18  E-value=4.1e-11  Score=91.65  Aligned_cols=43  Identities=26%  Similarity=0.292  Sum_probs=38.1

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.+.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        25 ~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~   67 (372)
T 1v43_A           25 TAVNKLNLTIKDG--EFLVLLGPSGCGKTTTLRMIAGLEEPTEGR   67 (372)
T ss_dssp             EEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             EEEeeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCceE
Confidence            4577889999998  999999999999999999999998776663

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.18  E-value=3.8e-12  Score=96.40  Aligned_cols=35  Identities=23%  Similarity=0.145  Sum_probs=29.5

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      +.++++++...+  ..++++|++|||||||+|.|++.
T Consensus        44 ~l~~i~~~~~~g--~~v~i~G~~GaGKSTLl~~l~g~   78 (337)
T 2qm8_A           44 LIDAVLPQTGRA--IRVGITGVPGVGKSTTIDALGSL   78 (337)
T ss_dssp             HHHHHGGGCCCS--EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHhCCcccCCC--eEEEEECCCCCCHHHHHHHHHHh
Confidence            345667777777  99999999999999999999854

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.17  E-value=5.8e-10  Score=88.34  Aligned_cols=123  Identities=15%  Similarity=0.168  Sum_probs=70.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh------CCcccccccCCCCcce-----------eeEEEEE--------------E-
Q 030624           18 NGERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASSSGVTS-----------TCEMQRT--------------V-   65 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~------~~~~~~~~~~~~~~t~-----------~~~~~~~--------------~-   65 (174)
                      .+..+|+++|++|+||||+++.|+      |....-..........           ...+...              . 
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            345789999999999999999998      5432111110000000           0000010              0 


Q ss_pred             E-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCc-EEE
Q 030624           66 L-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIV  143 (174)
Q Consensus        66 ~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~i  143 (174)
                      + ..+..+.+|||||....   ......++......  ..+|.+++|+|+....+  .....+.+.+.      .+ ..+
T Consensus       179 ~~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~gv  245 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVASV  245 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCCE
T ss_pred             HHHCCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh------cCceEE
Confidence            0 04557899999998852   23344445444332  26799999999975543  23333333332      25 488


Q ss_pred             EEeCcCCCCC
Q 030624          144 VFTGGDELED  153 (174)
Q Consensus       144 v~tk~D~~~~  153 (174)
                      |+||+|....
T Consensus       246 VlNK~D~~~~  255 (504)
T 2j37_W          246 IVTKLDGHAK  255 (504)
T ss_dssp             EEECTTSCCC
T ss_pred             EEeCCccccc
Confidence            9999998754

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.17  E-value=6.9e-11  Score=90.93  Aligned_cols=90  Identities=17%  Similarity=0.112  Sum_probs=59.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC-----------------cEEEEEeCCCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG-----------------QVVNVIDTPGLFD   82 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~~iDtpG~~~   82 (174)
                      ..+++++|++|||||||+|+|++....... ..+..|.......+.+ .+                 ..+.++|+||+..
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~-~~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPA-NYPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTT-CCSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccc-CCCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEecccccc
Confidence            489999999999999999999996531222 1223333333333333 22                 3578999999987


Q ss_pred             CCCChHHHHHHHHHHHHhccCCceEEEEEEeCC
Q 030624           83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  115 (174)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  115 (174)
                      +....+.+...+...    +..+|.+++++++.
T Consensus        98 ~~s~~e~L~~~fl~~----ir~~d~il~Vvd~~  126 (392)
T 1ni3_A           98 GASTGVGLGNAFLSH----VRAVDAIYQVVRAF  126 (392)
T ss_dssp             CCCSSSSSCHHHHHH----HTTCSEEEEEEECC
T ss_pred             CCcHHHHHHHHHHHH----HHHHHHHHHHHhcc
Confidence            655444343344433    34679999999985

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.17  E-value=5.4e-11  Score=90.90  Aligned_cols=90  Identities=21%  Similarity=0.187  Sum_probs=57.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe--------------------CCcEEEEEeCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------------------DGQVVNVIDTPGL   80 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~~~~iDtpG~   80 (174)
                      .+++++|.+|+|||||+|+|++.... .. ..+..|...+.....+.                    ....+.++||||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~-v~-~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANAL-AA-NYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTT-CS-SCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCc-cc-CCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            57899999999999999999986421 11 11222332222222221                    2346899999999


Q ss_pred             CCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCC
Q 030624           81 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS  116 (174)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~  116 (174)
                      .++....+.+...+...+    ..+|++++|+|+.+
T Consensus        80 ~~~a~~~~~lg~~fl~~i----r~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHI----REVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHH----HTCSEEEEEEECCC
T ss_pred             cccccccchHHHHHHHHH----HhCCEEEEEEECCC
Confidence            876543333444444444    45699999999974

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.16  E-value=6.4e-11  Score=89.83  Aligned_cols=33  Identities=18%  Similarity=0.062  Sum_probs=26.1

Q ss_pred             cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624            9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus         9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .++++....+  .+++++|++|+|||||+|.|++.
T Consensus        47 ~~l~~~~~~~--~~i~i~G~~g~GKSTl~~~l~~~   79 (341)
T 2p67_A           47 DAIMPYCGNT--LRLGVTGTPGAGKSTFLEAFGML   79 (341)
T ss_dssp             HHHGGGCSCS--EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             HhCCcccCCC--EEEEEEcCCCCCHHHHHHHHHHH
Confidence            3445555544  89999999999999999999753

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.15  E-value=8.3e-11  Score=83.56  Aligned_cols=43  Identities=16%  Similarity=0.103  Sum_probs=37.9

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++++.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        23 ~il~~vsl~i~~G--e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~   65 (214)
T 1sgw_A           23 PVLERITMTIEKG--NVVNFHGPNGIGKTTLLKTISTYLKPLKGE   65 (214)
T ss_dssp             EEEEEEEEEEETT--CCEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             eEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence            4678889999998  999999999999999999999988766653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.14  E-value=5.8e-11  Score=90.08  Aligned_cols=42  Identities=29%  Similarity=0.267  Sum_probs=38.0

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      +.++++++.+.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        15 ~l~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~   56 (348)
T 3d31_A           15 SLDNLSLKVESG--EYFVILGPTGAGKTLFLELIAGFHVPDSGR   56 (348)
T ss_dssp             EEEEEEEEECTT--CEEEEECCCTHHHHHHHHHHHTSSCCSEEE
T ss_pred             EEeeeEEEEcCC--CEEEEECCCCccHHHHHHHHHcCCCCCCcE
Confidence            778899999999  999999999999999999999998776653

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.13  E-value=1.8e-11  Score=91.35  Aligned_cols=43  Identities=26%  Similarity=0.268  Sum_probs=38.0

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++|+++.+  .+++|+|+||||||||++.|+|...+..|.
T Consensus        68 ~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p~~G~  110 (306)
T 3nh6_A           68 ETLQDVSFTVMPG--QTLALVGPSGAGKSTILRLLFRFYDISSGC  110 (306)
T ss_dssp             EEEEEEEEEECTT--CEEEEESSSCHHHHHHHHHHTTSSCCSEEE
T ss_pred             ceeeeeeEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCCCCcE
Confidence            4678899999999  999999999999999999999988766653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.11  E-value=6.5e-11  Score=87.04  Aligned_cols=44  Identities=18%  Similarity=0.195  Sum_probs=38.8

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.++++|+++.+  ..++|+|+||||||||++.|+|...+..|.
T Consensus        32 ~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~   75 (271)
T 2ixe_A           32 VQVLQGLTFTLYPG--KVTALVGPNGSGKSTVAALLQNLYQPTGGK   75 (271)
T ss_dssp             SCCEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             ceeeEeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCCE
Confidence            34788899999999  999999999999999999999998776653

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.10  E-value=4.9e-11  Score=86.58  Aligned_cols=44  Identities=25%  Similarity=0.293  Sum_probs=38.7

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.++++++++.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        22 ~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   65 (247)
T 2ff7_A           22 PVILDNINLSIKQG--EVIGIVGRSGSGKSTLTKLIQRFYIPENGQ   65 (247)
T ss_dssp             CEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             cceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            34788899999999  999999999999999999999998766653

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.10  E-value=4.5e-11  Score=86.56  Aligned_cols=44  Identities=18%  Similarity=0.186  Sum_probs=39.0

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.++++++++.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        15 ~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   58 (243)
T 1mv5_A           15 EQILRDISFEAQPN--SIIAFAGPSGGGKSTIFSLLERFYQPTAGE   58 (243)
T ss_dssp             SCSEEEEEEEECTT--EEEEEECCTTSSHHHHHHHHTTSSCCSBSC
T ss_pred             CceEEEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            45788899999999  999999999999999999999998776653

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.09  E-value=3.1e-10  Score=81.47  Aligned_cols=43  Identities=19%  Similarity=0.270  Sum_probs=38.0

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++++.+  ..++++|+||||||||++.|+|...+..|
T Consensus        21 ~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   63 (229)
T 2pze_A           21 TPVLKDINFKIERG--QLLAVAGSTGAGKTSLLMMIMGELEPSEG   63 (229)
T ss_dssp             CCSEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             ceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence            45788899999998  99999999999999999999998876554

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.09  E-value=1.2e-10  Score=88.57  Aligned_cols=24  Identities=29%  Similarity=0.148  Sum_probs=22.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..+++|+|++|||||||+|.|++.
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHH
Confidence            489999999999999999999974

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.06  E-value=3e-10  Score=83.13  Aligned_cols=44  Identities=18%  Similarity=0.182  Sum_probs=38.7

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.++++|+++.|  ..++++|+||||||||++.|+|...+..|.
T Consensus        19 ~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~   62 (262)
T 1b0u_A           19 HEVLKGVSLQARAG--DVISIIGSSGSGKSTFLRCINFLEKPSEGA   62 (262)
T ss_dssp             EEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             EEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            34678899999999  999999999999999999999998776653

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.05  E-value=4.7e-11  Score=86.73  Aligned_cols=41  Identities=22%  Similarity=0.154  Sum_probs=36.3

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      +.++++++.+.+  ..++++|+||||||||++.|+|...+. |.
T Consensus        15 vl~~vsl~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p~-G~   55 (249)
T 2qi9_C           15 RLGPLSGEVRAG--EILHLVGPNGAGKSTLLARMAGMTSGK-GS   55 (249)
T ss_dssp             TEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCE-EE
T ss_pred             EEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCC-eE
Confidence            567888999988  999999999999999999999988765 53

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.04  E-value=3.9e-10  Score=85.94  Aligned_cols=25  Identities=24%  Similarity=0.252  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhC
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      +...+|+++|++|+|||||++.|+.
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            3458999999999999999999864

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.04  E-value=1.8e-10  Score=83.27  Aligned_cols=41  Identities=24%  Similarity=0.194  Sum_probs=33.4

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      +.++++++.+.   ..++++|+||||||||++.|+|...+..|.
T Consensus        14 ~l~~isl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~   54 (240)
T 2onk_A           14 FRLNVDFEMGR---DYCVLLGPTGAGKSVFLELIAGIVKPDRGE   54 (240)
T ss_dssp             EEEEEEEEECS---SEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             EEeeeEEEECC---EEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            35667777665   588999999999999999999998766653

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=99.04  E-value=7e-10  Score=89.32  Aligned_cols=109  Identities=21%  Similarity=0.196  Sum_probs=61.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeeEEEEEE--EeCCcEEEEEeCCCCCCCCC-ChHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTV--LKDGQVVNVIDTPGLFDFSA-GSEFVGKE   93 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~iDtpG~~~~~~-~~~~~~~~   93 (174)
                      .+..+|+|+|.+|+|||||+|.|+|... +..+....+.|.........  ...+..+.++||||+.+... ..... ..
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~-~~  114 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQND-SW  114 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTH-HH
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHH-HH
Confidence            3457899999999999999999999763 22222222233222111111  11456899999999987432 11111 11


Q ss_pred             HHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 030624           94 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTL  132 (174)
Q Consensus        94 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~  132 (174)
                      +.......   .+  ++++++...++..+...+..+.+.
T Consensus       115 ~fala~ll---ss--~lv~n~~~~i~~~dl~~l~~v~e~  148 (592)
T 1f5n_A          115 IFALAVLL---SS--TFVYNSIGTINQQAMDQLYYVTEL  148 (592)
T ss_dssp             HHHHHHHH---CS--EEEEEEESCSSHHHHHTTHHHHTH
T ss_pred             HHHHHHHh---cC--eEEEECCCCccHHHHHHHHHHHHH
Confidence            21111111   12  345565557888877666655544

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.02  E-value=1.2e-10  Score=84.94  Aligned_cols=44  Identities=20%  Similarity=0.216  Sum_probs=38.6

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.++++++++.|  ..++++|+||||||||++.|+|...+..|.
T Consensus        20 ~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~   63 (257)
T 1g6h_A           20 FKALDGVSISVNKG--DVTLIIGPNGSGKSTLINVITGFLKADEGR   63 (257)
T ss_dssp             EEEEEEECCEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             EeeEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            34678899999999  999999999999999999999998776653

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.02  E-value=7.6e-10  Score=87.08  Aligned_cols=142  Identities=14%  Similarity=0.146  Sum_probs=79.6

Q ss_pred             ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC--Cccee------------eEEEEEEE-------
Q 030624            8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS--GVTST------------CEMQRTVL-------   66 (174)
Q Consensus         8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~--~~t~~------------~~~~~~~~-------   66 (174)
                      ..+++++...+  ..++|+|+||||||||++.|++...+..|....  ..+..            .....+..       
T Consensus       283 ~~~Isl~i~~G--eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p  360 (503)
T 2yhs_A          283 DEPLNVEGKAP--FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS  360 (503)
T ss_dssp             BCCCCCCSCTT--EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred             CCCceeeccCC--eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence            45667776666  999999999999999999998765443332111  00000            00000100       


Q ss_pred             ------------eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH---Hhc-cCCceEEEEEEeCCCCCCHHHHHHHHHHH
Q 030624           67 ------------KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI---GMA-KDGIHAVLVVFSVRSRFSQEEEAALHSLQ  130 (174)
Q Consensus        67 ------------~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~il~v~~~~~~~~~~~~~~l~~l~  130 (174)
                                  ..+..+.++||+|....   ...++.++.+..   +.. ...++-+++++|++.+  ......++.+.
T Consensus       361 ~~tV~e~l~~a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~  435 (503)
T 2yhs_A          361 ASVIFDAIQAAKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFH  435 (503)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHH
Confidence                        12234789999998753   234444443332   322 2346788889987633  22233333343


Q ss_pred             HHHhhhhcCcEEEEEeCcCCCCCChhhHHHHh
Q 030624          131 TLFGKKIFDYMIVVFTGGDELEDNDETLEDYL  162 (174)
Q Consensus       131 ~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~  162 (174)
                      +..     ....+++||.|....- ..+..+.
T Consensus       436 ~~~-----~itgvIlTKLD~takg-G~~lsi~  461 (503)
T 2yhs_A          436 EAV-----GLTGITLTKLDGTAKG-GVIFSVA  461 (503)
T ss_dssp             HHT-----CCSEEEEECGGGCSCC-THHHHHH
T ss_pred             hhc-----CCCEEEEEcCCCcccc-cHHHHHH
Confidence            332     3567889999975432 3444443

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.02  E-value=1.7e-09  Score=78.67  Aligned_cols=77  Identities=14%  Similarity=0.015  Sum_probs=42.6

Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHH-HHHHHHHHHhhhhcCcEEEEEeCc
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGG  148 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~iv~tk~  148 (174)
                      ..+.++||||..+.     .....+...+...+.. +++++++|+....+..+.. ......... .....|+++|+||+
T Consensus       109 ~d~iiiDtpG~~~~-----~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~  181 (262)
T 1yrb_A          109 NDYVLIDTPGQMET-----FLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKV  181 (262)
T ss_dssp             CSEEEEECCSSHHH-----HHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCG
T ss_pred             CCEEEEeCCCccch-----hhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEecc
Confidence            36899999998741     1111111112223355 8999999886444544422 111111111 11226899999999


Q ss_pred             CCCCC
Q 030624          149 DELED  153 (174)
Q Consensus       149 D~~~~  153 (174)
                      |+...
T Consensus       182 D~~~~  186 (262)
T 1yrb_A          182 DLLSE  186 (262)
T ss_dssp             GGCCH
T ss_pred             ccccc
Confidence            98754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.02  E-value=8.9e-11  Score=86.62  Aligned_cols=44  Identities=18%  Similarity=0.152  Sum_probs=38.6

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.++++|+++.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        34 ~~vL~~isl~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~   77 (279)
T 2ihy_A           34 KTILKKISWQIAKG--DKWILYGLNGAGKTTLLNILNAYEPATSGT   77 (279)
T ss_dssp             EEEEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             EEEEEeeeEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCeE
Confidence            34678899999999  999999999999999999999998776653

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.01  E-value=1.2e-09  Score=81.43  Aligned_cols=133  Identities=14%  Similarity=0.163  Sum_probs=74.8

Q ss_pred             cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCc-------ce----eeEEE--EEE-E--
Q 030624            9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGV-------TS----TCEMQ--RTV-L--   66 (174)
Q Consensus         9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~------~~~~-------t~----~~~~~--~~~-~--   66 (174)
                      ..++++.+.+  ..++++|+||||||||++.|++...+..+..      ....       ..    ...+.  ... .  
T Consensus        91 ~~l~~~~~~g--~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~  168 (302)
T 3b9q_A           91 TELQLGFRKP--AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA  168 (302)
T ss_dssp             CSCCCCSSSC--EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred             cccccccCCC--cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence            3455655555  8999999999999999999988654433311      1000       00    00110  000 0  


Q ss_pred             ------------eCCcEEEEEeCCCCCCCCCChHHHHHH----HHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHH
Q 030624           67 ------------KDGQVVNVIDTPGLFDFSAGSEFVGKE----IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQ  130 (174)
Q Consensus        67 ------------~~~~~~~~iDtpG~~~~~~~~~~~~~~----~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~  130 (174)
                                  .......++||.|.....   +....+    .....+.....++-+++++|++..++....  ++.+.
T Consensus       169 ~~~v~e~l~~~~~~~~d~~lldt~gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~  243 (302)
T 3b9q_A          169 ATVLSKAVKRGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFN  243 (302)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCCCSSCC---HHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHH
T ss_pred             HHHHHHHHHHHHHcCCcchHHhcCCCCcch---hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHH
Confidence                        011235789999987532   333333    223334455678877888887655555432  22333


Q ss_pred             HHHhhhhcCcEEEEEeCcCCCCC
Q 030624          131 TLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       131 ~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +..     ...++++||.|....
T Consensus       244 ~~~-----g~t~iiiThlD~~~~  261 (302)
T 3b9q_A          244 EVV-----GITGLILTKLDGSAR  261 (302)
T ss_dssp             HHT-----CCCEEEEECCSSCSC
T ss_pred             Hhc-----CCCEEEEeCCCCCCc
Confidence            221     357888999998643

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.00  E-value=1.2e-09  Score=80.73  Aligned_cols=63  Identities=21%  Similarity=0.336  Sum_probs=40.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS   87 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~   87 (174)
                      ..+++++|.+|+|||||+|+|++......+. ..+.|....  .+..  +..+.++||||+.......
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~--~~~~--~~~~~l~DtpG~~~~~~~~  182 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQ--WVKV--GKELELLDTPGILWPKFED  182 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC-------------C--CEEE--TTTEEEEECCCCCCSCCCC
T ss_pred             CceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeE--EEEe--CCCEEEEECcCcCCCCCCC
Confidence            4789999999999999999999977543432 233343332  2222  4578999999998765443

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.99  E-value=2.1e-10  Score=92.69  Aligned_cols=43  Identities=33%  Similarity=0.301  Sum_probs=38.1

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.+.|  ..++++|+||||||||++.|+|...+..|.
T Consensus       355 ~~l~~isl~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G~  397 (578)
T 4a82_A          355 PILKDINLSIEKG--ETVAFVGMSGGGKSTLINLIPRFYDVTSGQ  397 (578)
T ss_dssp             CSEEEEEEEECTT--CEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred             cceeeeEEEECCC--CEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence            4678889999999  999999999999999999999988776653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.99  E-value=4.2e-10  Score=82.26  Aligned_cols=39  Identities=28%  Similarity=0.305  Sum_probs=35.5

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF   46 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~   46 (174)
                      .+.++++++++.+  ..++++|+||||||||++.|+|...+
T Consensus        34 ~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~   72 (260)
T 2ghi_A           34 RTLKSINFFIPSG--TTCALVGHTGSGKSTIAKLLYRFYDA   72 (260)
T ss_dssp             CSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             ceeEeeEEEECCC--CEEEEECCCCCCHHHHHHHHhccCCC
Confidence            4788899999999  99999999999999999999998754

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.99  E-value=1.4e-09  Score=87.95  Aligned_cols=44  Identities=30%  Similarity=0.387  Sum_probs=38.9

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.++++++.+.|  ..++++|+||||||||++.|+|...+..|.
T Consensus       356 ~~~l~~i~l~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G~  399 (582)
T 3b5x_A          356 KPALSHVSFSIPQG--KTVALVGRSGSGKSTIANLFTRFYDVDSGS  399 (582)
T ss_pred             ccccccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCCE
Confidence            34788899999999  999999999999999999999988776663

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.97  E-value=3.2e-09  Score=80.82  Aligned_cols=132  Identities=14%  Similarity=0.141  Sum_probs=74.9

Q ss_pred             ccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC---Ccce--------------eeEEEEEEE------
Q 030624           10 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS---GVTS--------------TCEMQRTVL------   66 (174)
Q Consensus        10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~---~~t~--------------~~~~~~~~~------   66 (174)
                      .++++.+.+  ..++++|+||||||||++.|++...+..+....   ....              ...+.....      
T Consensus       149 ~l~l~~~~g--~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~  226 (359)
T 2og2_A          149 ELQLGFRKP--AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA  226 (359)
T ss_dssp             SCCCCSSSS--EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred             CcceecCCC--eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence            455555555  899999999999999999998865443331100   0000              000100000      


Q ss_pred             -----------eCCcEEEEEeCCCCCCCCCChHHHHH----HHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHH
Q 030624           67 -----------KDGQVVNVIDTPGLFDFSAGSEFVGK----EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT  131 (174)
Q Consensus        67 -----------~~~~~~~~iDtpG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~  131 (174)
                                 .......++||.|.....   +....    +.....+.....++-+++++|++..++....  +..+.+
T Consensus       227 ~tv~e~l~~~~~~~~d~~lldt~Gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~  301 (359)
T 2og2_A          227 TVLSKAVKRGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNE  301 (359)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCCCSSCC---HHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHhcCCChhh---hhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHH
Confidence                       012235789999987532   22332    2333334456678878888887655554432  222332


Q ss_pred             HHhhhhcCcEEEEEeCcCCCCC
Q 030624          132 LFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       132 ~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..     ....+++||.|....
T Consensus       302 ~~-----g~t~iiiThlD~~~~  318 (359)
T 2og2_A          302 VV-----GITGLILTKLDGSAR  318 (359)
T ss_dssp             HT-----CCCEEEEESCTTCSC
T ss_pred             hc-----CCeEEEEecCccccc
Confidence            21     357889999997644

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.97  E-value=1.4e-09  Score=79.77  Aligned_cols=43  Identities=21%  Similarity=0.222  Sum_probs=38.3

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.+.|  ..++++|+||||||||++.|+|...+..|.
T Consensus        21 ~vl~~vsl~i~~G--e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~   63 (266)
T 2yz2_A           21 KALENVSLVINEG--ECLLVAGNTGSGKSTLLQIVAGLIEPTSGD   63 (266)
T ss_dssp             EEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             ceeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence            3678899999999  999999999999999999999998776653

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.97  E-value=4e-10  Score=91.18  Aligned_cols=43  Identities=21%  Similarity=0.192  Sum_probs=38.2

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.+.|  ..++++|+||||||||++.|+|...+..|.
T Consensus       357 ~~l~~isl~i~~G--e~~~ivG~sGsGKSTll~~l~g~~~~~~G~  399 (587)
T 3qf4_A          357 PVLSGVNFSVKPG--SLVAVLGETGSGKSTLMNLIPRLIDPERGR  399 (587)
T ss_dssp             CSEEEEEEEECTT--CEEEEECSSSSSHHHHHHTTTTSSCCSEEE
T ss_pred             cceeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCccCCCcE
Confidence            4678899999999  999999999999999999999988776653

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.96  E-value=5.7e-10  Score=90.49  Aligned_cols=43  Identities=23%  Similarity=0.305  Sum_probs=38.4

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.+.|  ..++++|+||||||||++.|+|...+..|.
T Consensus       369 ~~l~~isl~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G~  411 (598)
T 3qf4_B          369 PVLKDITFHIKPG--QKVALVGPTGSGKTTIVNLLMRFYDVDRGQ  411 (598)
T ss_dssp             CSCCSEEEECCTT--CEEEEECCTTSSTTHHHHHHTTSSCCSEEE
T ss_pred             ccccceEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCcCCCCeE
Confidence            4678899999999  999999999999999999999998776653

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.94  E-value=1.2e-09  Score=79.90  Aligned_cols=41  Identities=22%  Similarity=0.248  Sum_probs=36.4

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.+ +  ..++++|+||||||||++.|+|.. +..|.
T Consensus        19 ~il~~vsl~i~-G--e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~   59 (263)
T 2pjz_A           19 FSLENINLEVN-G--EKVIILGPNGSGKTTLLRAISGLL-PYSGN   59 (263)
T ss_dssp             EEEEEEEEEEC-S--SEEEEECCTTSSHHHHHHHHTTSS-CCEEE
T ss_pred             eeEEeeeEEEC-C--EEEEEECCCCCCHHHHHHHHhCCC-CCCcE
Confidence            46788899999 8  999999999999999999999988 76653

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.93  E-value=1.9e-10  Score=83.64  Aligned_cols=43  Identities=26%  Similarity=0.397  Sum_probs=36.4

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC--cccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR--RAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~--~~~~~~   49 (174)
                      ..+.++++|+++.+  ..++++|+||||||||++.|+|.  ..+..|
T Consensus        16 ~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G   60 (250)
T 2d2e_A           16 ETILKGVNLVVPKG--EVHALMGPNGAGKSTLGKILAGDPEYTVERG   60 (250)
T ss_dssp             EEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTCTTCEEEEE
T ss_pred             EEEEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCce
Confidence            34678889999999  99999999999999999999997  444444

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.92  E-value=7e-09  Score=77.39  Aligned_cols=128  Identities=15%  Similarity=0.075  Sum_probs=70.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcc-----------eeeEEEEEE----------------
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVT-----------STCEMQRTV----------------   65 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~------~~~~t-----------~~~~~~~~~----------------   65 (174)
                      +...++++|++|||||||++.|++...+..+..      .....           ....+....                
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            457999999999999999999987654433311      00000           000000000                


Q ss_pred             EeCCcEEEEEeCCCCCCCCCC-hHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEE
Q 030624           66 LKDGQVVNVIDTPGLFDFSAG-SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV  144 (174)
Q Consensus        66 ~~~~~~~~~iDtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv  144 (174)
                      ........++||+|....... ...+.+......+.....++.+++++|+....  .....+..+.+..     ...+++
T Consensus       181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~-----~~t~ii  253 (304)
T 1rj9_A          181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAV-----GLTGVI  253 (304)
T ss_dssp             HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHH-----CCSEEE
T ss_pred             HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHc-----CCcEEE
Confidence            001224578999998653210 11122222233344566788888899876332  2233333333332     357899


Q ss_pred             EeCcCCCCC
Q 030624          145 FTGGDELED  153 (174)
Q Consensus       145 ~tk~D~~~~  153 (174)
                      +||.|....
T Consensus       254 vTh~d~~a~  262 (304)
T 1rj9_A          254 VTKLDGTAK  262 (304)
T ss_dssp             EECTTSSCC
T ss_pred             EECCccccc
Confidence            999997644

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.91  E-value=5.3e-10  Score=82.02  Aligned_cols=36  Identities=28%  Similarity=0.435  Sum_probs=33.5

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .+.++++|+++.|  ..++++|+||||||||++.|+|.
T Consensus        34 ~vl~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           34 AILRGLSLDVHPG--EVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCC
Confidence            4678889999999  99999999999999999999997

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.88  E-value=1.7e-08  Score=78.58  Aligned_cols=123  Identities=15%  Similarity=0.123  Sum_probs=70.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC------CcccccccCCCCc-----------ceeeEEEEE---------------EE
Q 030624           19 GERTVVLVGRTGNGKSATGNSILG------RRAFKSRASSSGV-----------TSTCEMQRT---------------VL   66 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~------~~~~~~~~~~~~~-----------t~~~~~~~~---------------~~   66 (174)
                      +...|+++|++|+||||++..|+.      ..+.-........           .....+...               ..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            458999999999999999988873      2211000000000           000000000               00


Q ss_pred             -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEE
Q 030624           67 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  145 (174)
Q Consensus        67 -~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~  145 (174)
                       ..+..+.++||||...   .......++......  ..+|.+++|+|+...  .......+.+.+..     ....+|+
T Consensus       179 ~~~~~DvVIIDTaGrl~---~d~~lm~el~~i~~~--~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~-----~i~gVIl  246 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHK---EDKALIEEMKQISNV--IHPHEVILVIDGTIG--QQAYNQALAFKEAT-----PIGSIIV  246 (443)
T ss_dssp             HHTTCSEEEEECCCCSS---CCHHHHHHHHHHHHH--HCCSEEEEEEEGGGG--GGHHHHHHHHHHSC-----TTEEEEE
T ss_pred             HhCCCCEEEEECCCccc---chHHHHHHHHHHHHh--hcCceEEEEEeCCCc--hhHHHHHHHHHhhC-----CCeEEEE
Confidence             0225688999999775   234566666554432  357899999998733  22233333333322     4667999


Q ss_pred             eCcCCCCC
Q 030624          146 TGGDELED  153 (174)
Q Consensus       146 tk~D~~~~  153 (174)
                      ||+|....
T Consensus       247 TKlD~~~~  254 (443)
T 3dm5_A          247 TKLDGSAK  254 (443)
T ss_dssp             ECCSSCSS
T ss_pred             ECCCCccc
Confidence            99998754

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.88  E-value=3.1e-10  Score=87.27  Aligned_cols=43  Identities=30%  Similarity=0.405  Sum_probs=37.6

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      +..+.++++++++.+  ..++++|+||||||||+++|+|... ..|
T Consensus        33 ~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~-~~G   75 (390)
T 3gd7_A           33 GNAILENISFSISPG--QRVGLLGRTGSGKSTLLSAFLRLLN-TEG   75 (390)
T ss_dssp             SCCSEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTCSE-EEE
T ss_pred             CeEEeeceeEEEcCC--CEEEEECCCCChHHHHHHHHhCCCC-CCe
Confidence            345788999999999  9999999999999999999999875 444

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.87  E-value=2.4e-09  Score=93.60  Aligned_cols=43  Identities=21%  Similarity=0.187  Sum_probs=38.6

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.++|  .+++++|++|||||||++.|++...+..|.
T Consensus      1093 ~VL~~isl~I~~G--e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1135 (1321)
T 4f4c_A         1093 EILKGLSFSVEPG--QTLALVGPSGCGKSTVVALLERFYDTLGGE 1135 (1321)
T ss_dssp             CSEEEEEEEECTT--CEEEEECSTTSSTTSHHHHHTTSSCCSSSE
T ss_pred             ccccceeEEECCC--CEEEEECCCCChHHHHHHHHhcCccCCCCE
Confidence            4788999999999  999999999999999999999988776663

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.86  E-value=1.4e-09  Score=87.86  Aligned_cols=44  Identities=30%  Similarity=0.387  Sum_probs=38.7

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.++++++.+.|  ..++++|+||||||||++.|+|...+..|.
T Consensus       356 ~~~l~~v~~~i~~G--~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~  399 (582)
T 3b60_A          356 VPALRNINLKIPAG--KTVALVGRSGSGKSTIASLITRFYDIDEGH  399 (582)
T ss_dssp             CCSEEEEEEEECTT--CEEEEEECTTSSHHHHHHHHTTTTCCSEEE
T ss_pred             CccccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhhccCCCCCe
Confidence            34778899999999  999999999999999999999988776653

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.83  E-value=2.5e-09  Score=80.55  Aligned_cols=123  Identities=15%  Similarity=0.094  Sum_probs=68.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCc--c---------------eeeEEEEEE----------------
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV--T---------------STCEMQRTV----------------   65 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~--t---------------~~~~~~~~~----------------   65 (174)
                      +...++++|+|||||||+++.|++...+..+......  +               ....+....                
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~  207 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA  207 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence            3489999999999999999999986544333111000  0               000000000                


Q ss_pred             EeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEE
Q 030624           66 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  145 (174)
Q Consensus        66 ~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~  145 (174)
                      ......+.++||+|.....   .....++....+..  .+|..++++|+...  ......++.+.+..     ....+++
T Consensus       208 ~~~~~d~vliDtaG~~~~~---~~l~~eL~~i~ral--~~de~llvLDa~t~--~~~~~~~~~~~~~~-----~it~iil  275 (328)
T 3e70_C          208 KARGIDVVLIDTAGRSETN---RNLMDEMKKIARVT--KPNLVIFVGDALAG--NAIVEQARQFNEAV-----KIDGIIL  275 (328)
T ss_dssp             HHHTCSEEEEEECCSCCTT---TCHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHS-----CCCEEEE
T ss_pred             HhccchhhHHhhccchhHH---HHHHHHHHHHHHHh--cCCCCEEEEecHHH--HHHHHHHHHHHHhc-----CCCEEEE
Confidence            0012346789999986532   33444444443333  36778888887633  12223333333222     4568999


Q ss_pred             eCcCCCCC
Q 030624          146 TGGDELED  153 (174)
Q Consensus       146 tk~D~~~~  153 (174)
                      ||.|....
T Consensus       276 TKlD~~a~  283 (328)
T 3e70_C          276 TKLDADAR  283 (328)
T ss_dssp             ECGGGCSC
T ss_pred             eCcCCccc
Confidence            99998543

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.83  E-value=2.4e-09  Score=93.35  Aligned_cols=43  Identities=30%  Similarity=0.255  Sum_probs=38.2

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.+.|  .+++++|++|||||||++.|+|...+..|.
T Consensus       404 ~vL~~isl~i~~G--~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~  446 (1284)
T 3g5u_A          404 QILKGLNLKVKSG--QTVALVGNSGCGKSTTVQLMQRLYDPLDGM  446 (1284)
T ss_dssp             CSEEEEEEEECTT--CEEEEECCSSSSHHHHHHHTTTSSCCSEEE
T ss_pred             cceecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence            3678899999999  999999999999999999999988766653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.81  E-value=4.7e-09  Score=76.76  Aligned_cols=60  Identities=30%  Similarity=0.406  Sum_probs=38.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      .+++++|.+|+|||||+|+|++......+. ..+.|....  .+.  -+..+.++||||+.....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~-~~g~T~~~~--~~~--~~~~~~l~DtpG~~~~~~  159 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA-QPGITKGIQ--WFS--LENGVKILDTPGILYKNI  159 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSC--EEE--CTTSCEEESSCEECCCCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCC-CCCCccceE--EEE--eCCCEEEEECCCcccCcC
Confidence            489999999999999999999877543332 223333322  121  245788999999998654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.80  E-value=1.7e-09  Score=94.56  Aligned_cols=43  Identities=28%  Similarity=0.280  Sum_probs=38.3

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      -+.++++++.+.|  ..++++|++|||||||++.|+|...+..|.
T Consensus       432 ~vL~~isl~i~~G--~~vaivG~sGsGKSTll~ll~~~~~~~~G~  474 (1321)
T 4f4c_A          432 PILRGMNLRVNAG--QTVALVGSSGCGKSTIISLLLRYYDVLKGK  474 (1321)
T ss_dssp             CSEEEEEEEECTT--CEEEEEECSSSCHHHHHHHHTTSSCCSEEE
T ss_pred             ceeeceEEeecCC--cEEEEEecCCCcHHHHHHHhccccccccCc
Confidence            4578899999999  999999999999999999999998776663

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.80  E-value=7.6e-08  Score=78.05  Aligned_cols=36  Identities=17%  Similarity=0.193  Sum_probs=30.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 030624           14 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS   51 (174)
Q Consensus        14 ~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~   51 (174)
                      +...|  .+++++|+||+|||||++.|+|...+..|..
T Consensus       378 ~v~~G--ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I  413 (607)
T 3bk7_A          378 EIRKG--EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV  413 (607)
T ss_dssp             EEETT--CEEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred             ccCCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            34556  8999999999999999999999987766643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.77  E-value=9.8e-09  Score=79.88  Aligned_cols=125  Identities=18%  Similarity=0.144  Sum_probs=69.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC------cccccccCCC---------------CcceeeEE---E-------EEE-E
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGR------RAFKSRASSS---------------GVTSTCEM---Q-------RTV-L   66 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~------~~~~~~~~~~---------------~~t~~~~~---~-------~~~-~   66 (174)
                      +...++++|++|+||||++..|+..      .+.-......               +.......   .       ... .
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            3589999999999999999988732      1110000000               00000000   0       000 0


Q ss_pred             -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEE
Q 030624           67 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  145 (174)
Q Consensus        67 -~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~  145 (174)
                       ..+..+.++||||..... .......++.......  .+|.+++|+|+...  .......+.+.+..     ....+++
T Consensus       176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~-----~~~gVIl  245 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQAS-----PIGSVII  245 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHC-----SSEEEEE
T ss_pred             HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhccc-----CCcEEEE
Confidence             024568899999975411 1234556666554433  46889999998733  22233444444432     4678999


Q ss_pred             eCcCCCCC
Q 030624          146 TGGDELED  153 (174)
Q Consensus       146 tk~D~~~~  153 (174)
                      ||+|....
T Consensus       246 TKlD~~a~  253 (433)
T 3kl4_A          246 TKMDGTAK  253 (433)
T ss_dssp             ECGGGCSC
T ss_pred             eccccccc
Confidence            99998643

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.76  E-value=1.2e-07  Score=75.87  Aligned_cols=35  Identities=17%  Similarity=0.194  Sum_probs=30.0

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS   51 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~   51 (174)
                      ...|  .+++|+|+||||||||++.|+|...+..|..
T Consensus       309 i~~G--e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i  343 (538)
T 1yqt_A          309 IKKG--EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKI  343 (538)
T ss_dssp             EETT--CEEEEECCTTSSHHHHHHHHHTSSCCSBCCC
T ss_pred             cCCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence            4556  8999999999999999999999987766643

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.76  E-value=3.9e-09  Score=76.09  Aligned_cols=43  Identities=21%  Similarity=0.276  Sum_probs=38.4

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..+.++++++++.+  ..++++|+||||||||++.|+|...+..|
T Consensus        18 ~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G   60 (237)
T 2cbz_A           18 PPTLNGITFSIPEG--ALVAVVGQVGCGKSSLLSALLAEMDKVEG   60 (237)
T ss_dssp             CCSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTCSEEEEE
T ss_pred             CceeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            45788899999999  99999999999999999999998876555

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.75  E-value=6.2e-08  Score=73.16  Aligned_cols=81  Identities=11%  Similarity=0.055  Sum_probs=55.5

Q ss_pred             EEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCC-------CCC-HHHHHHHHHHHH
Q 030624           60 EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS-------RFS-QEEEAALHSLQT  131 (174)
Q Consensus        60 ~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~-------~~~-~~~~~~l~~l~~  131 (174)
                      ....+.. ++..+.+|||+|...           .+..+..++.+++++|||+|.++       .-+ ..-.+.+..+..
T Consensus       152 ~~~~~~~-~~v~l~iwDtaGQe~-----------~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~  219 (340)
T 4fid_A          152 HEYDFVV-KDIPFHLIDVGGQRS-----------ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKD  219 (340)
T ss_dssp             EEEEEES-SSCEEEEEECCSCHH-----------HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHH
T ss_pred             EEEEEEe-eeeeeccccCCCccc-----------ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHH
Confidence            3444444 567899999999875           77788889999999999999871       001 112344444444


Q ss_pred             HHhhh--hcCcEEEEEeCcCCCC
Q 030624          132 LFGKK--IFDYMIVVFTGGDELE  152 (174)
Q Consensus       132 ~~~~~--~~~~~~iv~tk~D~~~  152 (174)
                      .....  ...|++++.||+|+..
T Consensus       220 i~~~~~~~~~piiLv~NK~DL~~  242 (340)
T 4fid_A          220 IMTNEFLKGAVKLIFLNKMDLFE  242 (340)
T ss_dssp             HHHCGGGTTSEEEEEEECHHHHH
T ss_pred             HhhhhccCCCeEEEEEECchhhh
Confidence            44332  2358999999999864

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.75  E-value=3.6e-08  Score=74.09  Aligned_cols=82  Identities=11%  Similarity=0.083  Sum_probs=56.4

Q ss_pred             eEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCC-------CCCCHH-HHHHHHHHH
Q 030624           59 CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-------SRFSQE-EEAALHSLQ  130 (174)
Q Consensus        59 ~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-------~~~~~~-~~~~l~~l~  130 (174)
                      .....+.. ++..+.+|||.|...           .+..+..++.+++++++|+|.+       +.-+.. -.+.+..+.
T Consensus       157 i~~~~~~~-~~v~l~iwDtgGQe~-----------~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~  224 (327)
T 3ohm_A          157 IIEYPFDL-QSVIFRMVDVGGQRS-----------ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFR  224 (327)
T ss_dssp             EEEEEEEE-TTEEEEEEEECCSHH-----------HHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHH
T ss_pred             EEEEEEEe-eceeeEEEEcCCchh-----------HHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHH
Confidence            34444445 677899999999875           7777788999999999999765       211111 234455555


Q ss_pred             HHHhhh--hcCcEEEEEeCcCCCC
Q 030624          131 TLFGKK--IFDYMIVVFTGGDELE  152 (174)
Q Consensus       131 ~~~~~~--~~~~~~iv~tk~D~~~  152 (174)
                      +.....  ...|++++.||+|+..
T Consensus       225 ~i~~~~~~~~~~iiL~~NK~DL~~  248 (327)
T 3ohm_A          225 TIITYPWFQNSSVILFLNKKDLLE  248 (327)
T ss_dssp             HHHTSGGGTTCEEEEEEECHHHHH
T ss_pred             HHhhhhccCCceEEEEEECchhhh
Confidence            554433  2358999999999854

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.74  E-value=1.6e-08  Score=78.90  Aligned_cols=124  Identities=16%  Similarity=0.145  Sum_probs=67.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccc------cccCC----------------------CC-cceee-EE--EEEE
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFK------SRASS----------------------SG-VTSTC-EM--QRTV   65 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~------~~~~~----------------------~~-~t~~~-~~--~~~~   65 (174)
                      ++...|+++|++|+||||+++.|+......      .....                      .. .+... ..  ....
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~  176 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGME  176 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHH
Confidence            334789999999999999999987632100      00000                      00 00000 00  0000


Q ss_pred             EeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhc-CcEEEE
Q 030624           66 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIF-DYMIVV  144 (174)
Q Consensus        66 ~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~iv  144 (174)
                      ...+..+.++||||....   ......++.. +. ....+|.+++|+|+..+.  .   .+..+... ... . +...+|
T Consensus       177 ~~~~~D~vIIDT~G~~~~---~~~l~~~l~~-i~-~~~~~d~vllVvda~~g~--~---~~~~~~~~-~~~-~~~i~gvV  244 (432)
T 2v3c_C          177 KFKKADVLIIDTAGRHKE---EKGLLEEMKQ-IK-EITNPDEIILVIDGTIGQ--Q---AGIQAKAF-KEA-VGEIGSII  244 (432)
T ss_dssp             TTSSCSEEEEECCCSCSS---HHHHHHHHHH-TT-SSSCCSEEEEEEEGGGGG--G---HHHHHHHH-HTT-SCSCEEEE
T ss_pred             HhhCCCEEEEcCCCCccc---cHHHHHHHHH-HH-HHhcCcceeEEeeccccH--H---HHHHHHHH-hhc-ccCCeEEE
Confidence            013456899999998752   2334444432 22 334789999999986443  1   22222222 222 1 237899


Q ss_pred             EeCcCCCCC
Q 030624          145 FTGGDELED  153 (174)
Q Consensus       145 ~tk~D~~~~  153 (174)
                      +||+|....
T Consensus       245 lnK~D~~~~  253 (432)
T 2v3c_C          245 VTKLDGSAK  253 (432)
T ss_dssp             EECSSSCST
T ss_pred             EeCCCCccc
Confidence            999998643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.74  E-value=9.7e-08  Score=76.44  Aligned_cols=36  Identities=14%  Similarity=0.259  Sum_probs=30.4

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624           13 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus        13 ~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ++.+.+  .+++|+|+||||||||++.|+|...+..|.
T Consensus       289 ~~i~~G--ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~  324 (538)
T 3ozx_A          289 GEAKEG--EIIGILGPNGIGKTTFARILVGEITADEGS  324 (538)
T ss_dssp             EEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSBCC
T ss_pred             ceECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            344556  899999999999999999999998776664

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.72  E-value=3.5e-09  Score=78.96  Aligned_cols=58  Identities=29%  Similarity=0.333  Sum_probs=34.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC------CcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   83 (174)
                      .+++++|+||+|||||+|+|++...+..|....      ..|....  ....  . ..+++||||+...
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~--~-~g~v~dtpg~~~~  237 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHT--S-GGLVADTPGFSSL  237 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEE--T-TEEEESSCSCSSC
T ss_pred             CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--Hhhc--C-CEEEecCCCcccc
Confidence            799999999999999999999987665654332      1222111  1111  1 4689999999874

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.71  E-value=1.7e-08  Score=71.52  Aligned_cols=24  Identities=25%  Similarity=0.392  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .+.++++|++|+|||||++.|++.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHH
Confidence            478999999999999999999864

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=98.69  E-value=5.4e-08  Score=74.01  Aligned_cols=80  Identities=10%  Similarity=0.094  Sum_probs=54.9

Q ss_pred             EEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC--------CHHHHHHHHHHHH
Q 030624           60 EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF--------SQEEEAALHSLQT  131 (174)
Q Consensus        60 ~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~--------~~~~~~~l~~l~~  131 (174)
                      ....+.+ ++..+.+|||+|...           .+..+..++.+++++|||+|.++.-        ...-.+....+..
T Consensus       184 ~~~~~~~-~~~~l~iwDt~GQe~-----------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~  251 (353)
T 1cip_A          184 VETHFTF-KDLHFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDS  251 (353)
T ss_dssp             EEEEEEE-TTEEEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHH
T ss_pred             EEEEEee-CCeeEEEEeCCCchh-----------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHH
Confidence            3334444 577899999999876           5666777899999999999998421        1122344444555


Q ss_pred             HHhhh--hcCcEEEEEeCcCCC
Q 030624          132 LFGKK--IFDYMIVVFTGGDEL  151 (174)
Q Consensus       132 ~~~~~--~~~~~~iv~tk~D~~  151 (174)
                      .....  ...|++++.||+|+.
T Consensus       252 i~~~~~~~~~piiLv~NK~DL~  273 (353)
T 1cip_A          252 ICNNKWFTDTSIILFLNKKDLF  273 (353)
T ss_dssp             HHTCGGGTTSEEEEEEECHHHH
T ss_pred             HHcCccccCCcEEEEEECcCch
Confidence            44322  236899999999985

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.69  E-value=2.7e-07  Score=68.61  Aligned_cols=130  Identities=14%  Similarity=0.086  Sum_probs=69.1

Q ss_pred             cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc------cCCCCc-c----------eeeEEEE----------
Q 030624           11 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGV-T----------STCEMQR----------   63 (174)
Q Consensus        11 ~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~------~~~~~~-t----------~~~~~~~----------   63 (174)
                      ++++.+   ...++++|++|+||||++..|++......+      ...... .          ....+..          
T Consensus        92 i~~~~~---~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~  168 (297)
T 1j8m_F           92 VIPDKI---PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGI  168 (297)
T ss_dssp             CSCSSS---SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHH
T ss_pred             cccCCC---CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHH
Confidence            455443   488999999999999999988743211111      000000 0          0000000          


Q ss_pred             ----EE-Ee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhh
Q 030624           64 ----TV-LK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI  137 (174)
Q Consensus        64 ----~~-~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~  137 (174)
                          .. .. .+..+.++||||.... ...+....++.....  ...+|.+++|+++...  ...   ++.++.. ... 
T Consensus       169 ~~~~l~~~~~~~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~--~~~~d~vllVvda~~g--~~~---~~~~~~~-~~~-  238 (297)
T 1j8m_F          169 AKRGVEKFLSEKMEIIIVDTAGRHGY-GEEAALLEEMKNIYE--AIKPDEVTLVIDASIG--QKA---YDLASKF-NQA-  238 (297)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCCSCCT-TCHHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GGH---HHHHHHH-HHT-
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCCccc-ccHHHHHHHHHHHHH--HhcCCEEEEEeeCCch--HHH---HHHHHHH-Hhh-
Confidence                00 01 3446899999998751 123334444443322  2257889999998632  222   2223322 222 


Q ss_pred             cCcEEEEEeCcCCCCC
Q 030624          138 FDYMIVVFTGGDELED  153 (174)
Q Consensus       138 ~~~~~iv~tk~D~~~~  153 (174)
                      .+...+++||+|....
T Consensus       239 ~~i~gvVlnk~D~~~~  254 (297)
T 1j8m_F          239 SKIGTIIITKMDGTAK  254 (297)
T ss_dssp             CTTEEEEEECGGGCTT
T ss_pred             CCCCEEEEeCCCCCcc
Confidence            1337789999998643

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.68  E-value=1.8e-07  Score=75.83  Aligned_cols=42  Identities=19%  Similarity=0.311  Sum_probs=33.2

Q ss_pred             cccccCCCCCC---ceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            9 DDWELTSPSNG---ERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         9 ~~~~~~~~~~~---~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+++++...+.   ..+++++|+||||||||++.|+|...+..|.
T Consensus       364 ~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~  408 (608)
T 3j16_B          364 GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ  408 (608)
T ss_dssp             SSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred             CceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence            45566665552   2679999999999999999999998877764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.67  E-value=4.8e-09  Score=71.81  Aligned_cols=29  Identities=38%  Similarity=0.548  Sum_probs=24.7

Q ss_pred             ccccCCCCCCceEEEEEcCCCCCHHHHHHHH
Q 030624           10 DWELTSPSNGERTVVLVGRTGNGKSATGNSI   40 (174)
Q Consensus        10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l   40 (174)
                      +++|+.+.+  ..++++|+||||||||++.+
T Consensus         1 ~vsl~i~~g--ei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A            1 SMKLTIPEL--SLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             CEEEEEESS--EEEEEECCTTSCHHHHHHHH
T ss_pred             CccccCCCC--EEEEEECCCCCCHHHHHHHH
Confidence            356777777  99999999999999999943

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.67  E-value=3e-08  Score=73.88  Aligned_cols=58  Identities=28%  Similarity=0.332  Sum_probs=38.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC----C-cceeeEEEEEEEeCCcEEEEEeCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS----G-VTSTCEMQRTVLKDGQVVNVIDTPGLFD   82 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~----~-~t~~~~~~~~~~~~~~~~~~iDtpG~~~   82 (174)
                      ..++++|+||+|||||+|+|+ ...+..|....    + .++.. .....  .....+++||||+..
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~-~~~~~--~~~~g~v~d~pg~~~  228 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTG-VRLIP--FGKGSFVGDTPGFSK  228 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCC-EEEEE--ETTTEEEESSCCCSS
T ss_pred             cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceee-EEEEE--cCCCcEEEECcCcCc
Confidence            689999999999999999999 77666664432    1 11111 11111  124578999999874

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.64  E-value=4e-08  Score=73.32  Aligned_cols=133  Identities=15%  Similarity=0.178  Sum_probs=70.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcc-----------eeeEEEEE----------------E
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVT-----------STCEMQRT----------------V   65 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~------~~~~t-----------~~~~~~~~----------------~   65 (174)
                      +...++++|++|+||||++..|++......+..      .....           ........                .
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a  182 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA  182 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence            348999999999999999999876543222110      00000           00000000                0


Q ss_pred             EeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc----cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcE
Q 030624           66 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA----KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM  141 (174)
Q Consensus        66 ~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  141 (174)
                      ...+..+.++||||...   ..+.+..++.+.....    ...++.+++++++.   +.  ...++.+.... +.. ...
T Consensus       183 ~~~~~dvvIiDtpg~~~---~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~---t~--~~~l~~a~~~~-~~~-~i~  252 (306)
T 1vma_A          183 LARNKDVVIIDTAGRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT---TG--QNGLVQAKIFK-EAV-NVT  252 (306)
T ss_dssp             HHTTCSEEEEEECCCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG---GH--HHHHHHHHHHH-HHS-CCC
T ss_pred             HhcCCCEEEEECCCchh---hHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC---CC--HHHHHHHHHHH-hcC-CCC
Confidence            11234589999999643   3444555554433321    24578899999886   12  22222233222 111 345


Q ss_pred             EEEEeCcCCCCCChhhHHHHh
Q 030624          142 IVVFTGGDELEDNDETLEDYL  162 (174)
Q Consensus       142 ~iv~tk~D~~~~~~~~~~~~~  162 (174)
                      -+++||.|....- ..+....
T Consensus       253 gvVlTk~D~~~~g-G~~l~~~  272 (306)
T 1vma_A          253 GIILTKLDGTAKG-GITLAIA  272 (306)
T ss_dssp             EEEEECGGGCSCT-THHHHHH
T ss_pred             EEEEeCCCCccch-HHHHHHH
Confidence            6778999986443 3344443

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.63  E-value=1.3e-08  Score=75.42  Aligned_cols=42  Identities=19%  Similarity=0.264  Sum_probs=37.4

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++|+++.|  ..++++|+||||||||++.|+|...+..|
T Consensus        52 ~vl~~isl~i~~G--e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G   93 (290)
T 2bbs_A           52 PVLKDINFKIERG--QLLAVAGSTGAGKTSLLMMIMGELEPSEG   93 (290)
T ss_dssp             CSEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHTTSSCEEEE
T ss_pred             eEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence            4677889999998  99999999999999999999998876655

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.60  E-value=3.2e-08  Score=73.73  Aligned_cols=59  Identities=29%  Similarity=0.313  Sum_probs=38.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC----C--cceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMQRTVLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   83 (174)
                      ..++++|+||+|||||+|+|++...+..|....    +  .|...  ....  .....+++|+||+...
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~--~~~~--~~~~g~v~q~p~~~~~  234 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTA--QLLK--FDFGGYVVDTPGFANL  234 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSC--CEEE--CTTSCEEESSCSSTTC
T ss_pred             CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeee--EEEE--cCCCCEEEECcCCCcc
Confidence            689999999999999999999988776664332    1  11111  1111  2345789999998753

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.60  E-value=3.8e-08  Score=85.97  Aligned_cols=43  Identities=21%  Similarity=0.206  Sum_probs=38.3

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++++.+.|  .+++++|++|||||||++.|+|...+..|.
T Consensus      1047 ~~l~~vsl~i~~G--e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~ 1089 (1284)
T 3g5u_A         1047 PVLQGLSLEVKKG--QTLALVGSSGCGKSTVVQLLERFYDPMAGS 1089 (1284)
T ss_dssp             CSBSSCCEEECSS--SEEEEECSSSTTHHHHHHHHTTSSCCSEEE
T ss_pred             eeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence            3678899999999  999999999999999999999988776663

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.60  E-value=3.3e-07  Score=63.10  Aligned_cols=23  Identities=26%  Similarity=0.527  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      +++++|+||||||||++.|++..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999999865

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.60  E-value=1.5e-07  Score=70.65  Aligned_cols=141  Identities=16%  Similarity=0.121  Sum_probs=74.9

Q ss_pred             cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc------CCCCcc-------e-----eeEEEEE------
Q 030624            9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGVT-------S-----TCEMQRT------   64 (174)
Q Consensus         9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~------~~~~~t-------~-----~~~~~~~------   64 (174)
                      .+++++...+  ..++++|++|+||||++..|++......+.      ......       .     .....-+      
T Consensus        96 ~~l~~~~~~~--~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~  173 (320)
T 1zu4_A           96 YRIDFKENRL--NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN  173 (320)
T ss_dssp             CCCCCCTTSC--EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred             cCccccCCCC--eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence            4566665554  899999999999999998876543221110      000000       0     0001111      


Q ss_pred             -------------EEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh----ccCCceEEEEEEeCCCCCCHHHHHHHH
Q 030624           65 -------------VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM----AKDGIHAVLVVFSVRSRFSQEEEAALH  127 (174)
Q Consensus        65 -------------~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~il~v~~~~~~~~~~~~~~l~  127 (174)
                                   ....+..+.+|||||....   .+..+.++......    ....+|.+++++++...  .   ..++
T Consensus       174 ~~p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~---~~l~  245 (320)
T 1zu4_A          174 ADPASVVFDAIKKAKEQNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--Q---NGVI  245 (320)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--H---HHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--H---HHHH
Confidence                         0012346899999998752   23344444332221    12347899999988722  2   2333


Q ss_pred             HHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHh
Q 030624          128 SLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL  162 (174)
Q Consensus       128 ~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~  162 (174)
                      .++.. .... ...=+++||+|..... ..+....
T Consensus       246 ~~~~~-~~~~-~i~GvVltk~d~~~~~-g~~~~~~  277 (320)
T 1zu4_A          246 QAEEF-SKVA-DVSGIILTKMDSTSKG-GIGLAIK  277 (320)
T ss_dssp             HHHHH-TTTS-CCCEEEEECGGGCSCT-THHHHHH
T ss_pred             HHHHH-hhcC-CCcEEEEeCCCCCCch-hHHHHHH
Confidence            33333 2221 2345788999975442 3444443

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.57  E-value=3.3e-08  Score=66.81  Aligned_cols=40  Identities=20%  Similarity=0.160  Sum_probs=33.9

Q ss_pred             ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+++++.+.+  ..++++|++|||||||++.|++.. +..|.
T Consensus        23 l~~vsl~i~~G--e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~   62 (158)
T 1htw_A           23 EILLKLHTEKA--IMVYLNGDLGAGKTTLTRGMLQGI-GHQGN   62 (158)
T ss_dssp             HHHHHHCCSSC--EEEEEECSTTSSHHHHHHHHHHHT-TCCSC
T ss_pred             HhccccccCCC--CEEEEECCCCCCHHHHHHHHHHhC-CCCCe
Confidence            45677888888  899999999999999999999987 55553

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.49  E-value=4.5e-08  Score=69.57  Aligned_cols=35  Identities=17%  Similarity=0.095  Sum_probs=24.5

Q ss_pred             ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624            8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus         8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      .++++|+.+.+  ..++|+|+||||||||++.|++..
T Consensus        13 l~~isl~i~~G--~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           13 GLVPRGSMNNI--YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ---------CC--CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ccCCceecCCC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence            56788999888  899999999999999999999865

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.49  E-value=6e-08  Score=73.71  Aligned_cols=60  Identities=32%  Similarity=0.454  Sum_probs=37.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCC--c---ceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSG--V---TSTCEMQRTVLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~-~~~~~~~~~--~---t~~~~~~~~~~~~~~~~~~iDtpG~~~~   83 (174)
                      ..++++|+||+|||||+|.|++... +..|.....  .   ++. . ....+ -.+...++||||+.++
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~-~-~~i~~-v~q~~~l~dtpgv~e~  281 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTT-A-ARLYH-FPHGGDVIDSPGVREF  281 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------C-C-CEEEE-CTTSCEEEECHHHHTC
T ss_pred             CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceE-E-EEEEE-ECCCCEecCcccHHHh
Confidence            6899999999999999999999876 655533221  0   111 1 11111 2233468999998664

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.48  E-value=8.9e-07  Score=69.16  Aligned_cols=107  Identities=18%  Similarity=0.135  Sum_probs=57.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCC-----------------cccccccCCCCcceeeEEEEEEEe--------C--C
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGR-----------------RAFKSRASSSGVTSTCEMQRTVLK--------D--G   69 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~-----------------~~~~~~~~~~~~t~~~~~~~~~~~--------~--~   69 (174)
                      ..+...|+|+|+.++|||||+|.|++.                 ..+..+.+....|..    -..|.        .  +
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~G----Iw~~~~p~~~~~~~~~~  139 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTG----IQIWSEIFLINKPDGKK  139 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCE----EEEESSCEEEECSSSCE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeE----EEEecCccccccCCCCc
Confidence            344578999999999999999999864                 122222111122221    11121        1  2


Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHH
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLF  133 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~  133 (174)
                      ..+.++||||+.+...+ ......+...+..   -.+.+||-+  ...+...+.+.+..+.++.
T Consensus       140 ~~vvllDTeG~~~~~~~-~~~d~~ifal~~l---LSs~~IyN~--~~~i~~~~l~~L~~~~e~~  197 (447)
T 3q5d_A          140 VAVLLMDTQGTFDSQST-LRDSATVFALSTM---ISSIQVYNL--SQNVQEDDLQHLQLFTEYG  197 (447)
T ss_dssp             EEEEEEEEECCCSSHHH-HHHHHHHHHHHHH---HCSEEEEEE--SSSCCHHHHHHHHHHHHHH
T ss_pred             ceEEEEcCCcccccccc-hhhhHHHHHHHHH---HhhHHHHhh--cccccHHHHHHHHHHHHHH
Confidence            46899999999874211 1111112211111   124455443  3356777777777666653

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.45  E-value=9.1e-08  Score=69.10  Aligned_cols=39  Identities=21%  Similarity=0.184  Sum_probs=24.3

Q ss_pred             CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624            3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      |+..+.++++|+.+.+  ..++|+|++|||||||++.|.+.
T Consensus        10 ~~~~~l~~isl~i~~g--~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRP--FLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             -------------CCS--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceeecceeccCCCC--EEEEEECCCCCCHHHHHHHHHHH
Confidence            3445788899999988  99999999999999999999874

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.44  E-value=7.2e-08  Score=71.67  Aligned_cols=131  Identities=17%  Similarity=0.201  Sum_probs=68.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccccc-------CCCCccee-----------eEEEE----------E-EEeCCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA-------SSSGVTST-----------CEMQR----------T-VLKDGQ   70 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~-------~~~~~t~~-----------~~~~~----------~-~~~~~~   70 (174)
                      ...++++|++|+||||++..|++......|.       .....+..           .....          . .. .+.
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~  183 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEY  183 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCC
Confidence            4799999999999999999987644321221       00000000           00000          0 01 345


Q ss_pred             EEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCC
Q 030624           71 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE  150 (174)
Q Consensus        71 ~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~  150 (174)
                      .+.++||||....   ......++.+.+.  ...++.++++++++..  ..+   +..+.+.+..  ....-+++||.|.
T Consensus       184 dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~--~~~---~~~~~~~~~~--l~~~giVltk~D~  251 (296)
T 2px0_A          184 DHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAK--YED---MKHIVKRFSS--VPVNQYIFTKIDE  251 (296)
T ss_dssp             SEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBC--HHH---HHHHTTTTSS--SCCCEEEEECTTT
T ss_pred             CEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--HHH---HHHHHHHHhc--CCCCEEEEeCCCc
Confidence            6899999998852   2333444443322  2246778888887632  122   1122222221  1344567799998


Q ss_pred             CCCChhhHHHHhcc
Q 030624          151 LEDNDETLEDYLGR  164 (174)
Q Consensus       151 ~~~~~~~~~~~~~~  164 (174)
                      .... ..+......
T Consensus       252 ~~~~-g~~~~~~~~  264 (296)
T 2px0_A          252 TTSL-GSVFNILAE  264 (296)
T ss_dssp             CSCC-HHHHHHHHT
T ss_pred             ccch-hHHHHHHHH
Confidence            7543 344444433

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.43  E-value=3.7e-06  Score=71.21  Aligned_cols=34  Identities=18%  Similarity=0.149  Sum_probs=28.9

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHH
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSI   40 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l   40 (174)
                      .-+..++++..+.+  ..++|+||||+||||+++.+
T Consensus       649 ~~v~ndisl~~~~g--~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          649 AFIPNDVYFEKDKQ--MFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             CCCCEEEEEETTTB--CEEEEECCTTSSHHHHHHHH
T ss_pred             eeecccceeecCCC--eEEEEECCCCCCHHHHHHHH
Confidence            34566777877776  89999999999999999998

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.42  E-value=1.1e-07  Score=71.72  Aligned_cols=39  Identities=23%  Similarity=0.264  Sum_probs=31.1

Q ss_pred             cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      +++++..+.+  ..++++|+||||||||+++|++...+..+
T Consensus       162 ~~l~~~i~~g--~~v~i~G~~GsGKTTll~~l~g~~~~~~g  200 (330)
T 2pt7_A          162 SAIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEFIPKEER  200 (330)
T ss_dssp             HHHHHHHHHT--CCEEEEESTTSCHHHHHHHGGGGSCTTSC
T ss_pred             hhhhhhccCC--CEEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence            3445555556  78999999999999999999998766544

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.42  E-value=4.1e-06  Score=65.33  Aligned_cols=124  Identities=16%  Similarity=0.129  Sum_probs=66.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh-------CCcccccccCCCCc---------ce--eeEEEE--------------E-
Q 030624           18 NGERTVVLVGRTGNGKSATGNSIL-------GRRAFKSRASSSGV---------TS--TCEMQR--------------T-   64 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~-------~~~~~~~~~~~~~~---------t~--~~~~~~--------------~-   64 (174)
                      .+...|+++|++|+||||+...|+       |..+.-........         ..  ...+..              . 
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~  177 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK  177 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence            445789999999999999998877       33221110000000         00  000000              0 


Q ss_pred             EEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEE
Q 030624           65 VLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV  143 (174)
Q Consensus        65 ~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i  143 (174)
                      ... .+..+.++||||....   .+....++.....  ...++.+++|+++....+  ....   +..+ .... ...-+
T Consensus       178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~--~~~p~~vllVvda~~g~~--~~~~---~~~f-~~~l-~i~gv  245 (433)
T 2xxa_A          178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHA--SINPVETLFVVDAMTGQD--AANT---AKAF-NEAL-PLTGV  245 (433)
T ss_dssp             HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHH--HSCCSEEEEEEETTBCTT--HHHH---HHHH-HHHS-CCCCE
T ss_pred             HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHHH--hhcCcceeEEeecchhHH--HHHH---HHHH-hccC-CCeEE
Confidence            011 3456899999997652   2334444443322  346788999999873322  2222   2222 2221 22457


Q ss_pred             EEeCcCCCCC
Q 030624          144 VFTGGDELED  153 (174)
Q Consensus       144 v~tk~D~~~~  153 (174)
                      ++||+|....
T Consensus       246 VlnK~D~~~~  255 (433)
T 2xxa_A          246 VLTKVDGDAR  255 (433)
T ss_dssp             EEECTTSSSC
T ss_pred             EEecCCCCcc
Confidence            8999998644

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.38  E-value=1.9e-06  Score=66.93  Aligned_cols=123  Identities=20%  Similarity=0.213  Sum_probs=66.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccc------CCCCcc-----------eeeEEEEE--------------E-E
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGVT-----------STCEMQRT--------------V-L   66 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~------~~~~~t-----------~~~~~~~~--------------~-~   66 (174)
                      +...++++|++|+||||++..|++......+.      ......           ....+...              . .
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~  176 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence            34789999999999999998877543221110      000000           00000000              0 0


Q ss_pred             -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEE
Q 030624           67 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  145 (174)
Q Consensus        67 -~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~  145 (174)
                       .....+.++||||....   ......++.......  .+|.+++|+|+...  .   ..++.++.+ .... ...-+++
T Consensus       177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg--q---~av~~a~~f-~~~l-~i~GVIl  244 (425)
T 2ffh_A          177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--Q---EALSVARAF-DEKV-GVTGLVL  244 (425)
T ss_dssp             HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--T---HHHHHHHHH-HHHT-CCCEEEE
T ss_pred             HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch--H---HHHHHHHHH-HhcC-CceEEEE
Confidence             13345899999997753   234455554443322  57888999998622  1   222223322 2221 3466789


Q ss_pred             eCcCCCCC
Q 030624          146 TGGDELED  153 (174)
Q Consensus       146 tk~D~~~~  153 (174)
                      ||+|....
T Consensus       245 TKlD~~~~  252 (425)
T 2ffh_A          245 TKLDGDAR  252 (425)
T ss_dssp             ESGGGCSS
T ss_pred             eCcCCccc
Confidence            99997543

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.35  E-value=2.3e-06  Score=72.26  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=31.8

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..-+..+++++.+.+  ..++|+||||+|||||++.+.+
T Consensus       659 ~~~V~ndvsl~~~~g--~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          659 DQYVPNNTDLSEDSE--RVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             SSSCCEEEEECTTSC--CEEEEESCCCHHHHHHHHHHHH
T ss_pred             CceecccccccCCCC--eEEEEECCCCCchHHHHHHHHH
Confidence            345777888888877  8999999999999999999864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.34  E-value=1.2e-07  Score=70.61  Aligned_cols=36  Identities=22%  Similarity=0.306  Sum_probs=31.8

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      +.++++++++.+  ..++|+|++|+|||||++.|+|..
T Consensus       115 vL~~vsl~i~~G--e~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          115 ALKLWLKGIPKK--NCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHHHHTCTTC--SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hhccceEEecCC--CEEEEECCCCCcHHHHHHHHhhhc
Confidence            356788999998  999999999999999999999754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.32  E-value=4.8e-07  Score=72.48  Aligned_cols=41  Identities=20%  Similarity=0.169  Sum_probs=33.6

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      +..+++ +.+.|  .+++++|+||||||||++.|+|...+..|.
T Consensus        37 ~l~~vs-~i~~G--e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~   77 (538)
T 1yqt_A           37 VLYRLP-VVKEG--MVVGIVGPNGTGKSTAVKILAGQLIPNLCG   77 (538)
T ss_dssp             EEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred             cccCcC-cCCCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence            345555 56666  999999999999999999999988776664

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.31  E-value=6.7e-07  Score=63.36  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..+|+++|.+|+|||||++.++..
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            488999999999999999999865

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.27  E-value=4e-07  Score=63.98  Aligned_cols=30  Identities=30%  Similarity=0.347  Sum_probs=23.9

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           13 LTSPSNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        13 ~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      .+.+.+  ..++++|+||||||||++.|+|..
T Consensus        15 ~~i~~G--ei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           15 QPAAVG--RVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ----CC--CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence            355566  899999999999999999999865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.27  E-value=7.4e-07  Score=72.33  Aligned_cols=41  Identities=17%  Similarity=0.157  Sum_probs=33.5

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      +..+++ +.+.|  ..++++|+||||||||++.|+|...+..|.
T Consensus       107 ~l~~vs-~i~~G--e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~  147 (607)
T 3bk7_A          107 VLYRLP-IVKDG--MVVGIVGPNGTGKTTAVKILAGQLIPNLCE  147 (607)
T ss_dssp             EEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred             eeCCCC-CCCCC--CEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence            345555 56666  999999999999999999999988776664

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.25  E-value=2.6e-07  Score=65.98  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=21.5

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHh-CCc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL-GRR   44 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~-~~~   44 (174)
                      ..++.+|+.+.+  ..++|+|++|||||||++.|+ +..
T Consensus        16 ~~~~~sl~v~~G--~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           16 TQGPGSMLKSVG--VILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ------CCEECC--CEEEEECSCC----CHHHHHHC---
T ss_pred             ccCCCCcccCCC--CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            345677888888  899999999999999999999 764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.23  E-value=6.2e-07  Score=62.61  Aligned_cols=24  Identities=13%  Similarity=0.297  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..++++|+||||||||++.|++..
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            789999999999999999999864

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.23  E-value=5.8e-06  Score=61.31  Aligned_cols=123  Identities=20%  Similarity=0.213  Sum_probs=66.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccc------CCCCcc---------eeeEEEEEE-----------------E
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGVT---------STCEMQRTV-----------------L   66 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~------~~~~~t---------~~~~~~~~~-----------------~   66 (174)
                      +...++++|++|+||||++..|++......+.      ......         .........                 .
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~  176 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA  176 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence            34789999999999999999887643322111      000000         000000000                 0


Q ss_pred             -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEE
Q 030624           67 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  145 (174)
Q Consensus        67 -~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~  145 (174)
                       ..+..+.++||||....   ......++.......  .++.+++++++...  .   ..++.++.. .... ...-+++
T Consensus       177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~~--~---~~~~~~~~~-~~~~-~i~givl  244 (295)
T 1ls1_A          177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--Q---EALSVARAF-DEKV-GVTGLVL  244 (295)
T ss_dssp             HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--H---HHHHHHHHH-HHHT-CCCEEEE
T ss_pred             HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCCc--H---HHHHHHHHH-hhcC-CCCEEEE
Confidence             02346899999987642   233445554444432  46778888887622  2   222333332 2221 3455789


Q ss_pred             eCcCCCCC
Q 030624          146 TGGDELED  153 (174)
Q Consensus       146 tk~D~~~~  153 (174)
                      ||+|....
T Consensus       245 nk~d~~~~  252 (295)
T 1ls1_A          245 TKLDGDAR  252 (295)
T ss_dssp             ECGGGCSS
T ss_pred             ECCCCCcc
Confidence            99998654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.20  E-value=2.8e-07  Score=65.01  Aligned_cols=30  Identities=23%  Similarity=0.286  Sum_probs=26.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS   51 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~   51 (174)
                      ..++++|+||||||||++.|+|. .+..|..
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I   52 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV   52 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence            78999999999999999999999 7766643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.18  E-value=3.7e-07  Score=77.30  Aligned_cols=42  Identities=21%  Similarity=0.256  Sum_probs=37.2

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+.++++++.+.|  .+++|+|+||||||||++.|+|...+..|
T Consensus       687 ~iL~dVSl~I~~G--eivaIiGpNGSGKSTLLklLaGll~P~sG  728 (986)
T 2iw3_A          687 PQITDINFQCSLS--SRIAVIGPNGAGKSTLINVLTGELLPTSG  728 (986)
T ss_dssp             CSEEEEEEEEETT--CEEEECSCCCHHHHHHHHHHTTSSCCSEE
T ss_pred             eeeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence            3577889999998  99999999999999999999998876655

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.17  E-value=5.7e-06  Score=67.99  Aligned_cols=30  Identities=30%  Similarity=0.463  Sum_probs=27.6

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHH
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATG   37 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStli   37 (174)
                      .+.++++|+++.+  .+++|+|+||||||||+
T Consensus        32 ~~L~~vsl~i~~G--e~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           32 HNLKNIDVEIPRG--KLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             TTCCSEEEEEETT--SEEEEECSTTSSHHHHH
T ss_pred             cceeccEEEECCC--CEEEEECCCCCCHHHHh
Confidence            4578999999999  99999999999999996

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.17  E-value=5e-07  Score=65.94  Aligned_cols=37  Identities=22%  Similarity=0.162  Sum_probs=28.9

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK   47 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~   47 (174)
                      +.++++  .+.+  ..++++|+||||||||++.|++...+.
T Consensus        16 vl~~i~--i~~g--~~v~i~Gp~GsGKSTll~~l~g~~~~~   52 (261)
T 2eyu_A           16 KVLELC--HRKM--GLILVTGPTGSGKSTTIASMIDYINQT   52 (261)
T ss_dssp             HHHHGG--GCSS--EEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHh--hCCC--CEEEEECCCCccHHHHHHHHHHhCCCC
Confidence            344444  4555  899999999999999999999976543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.17  E-value=1.8e-06  Score=70.06  Aligned_cols=35  Identities=23%  Similarity=0.275  Sum_probs=29.9

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS   51 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~   51 (174)
                      ...|  ..++++|+||+|||||++.|+|...+..|..
T Consensus       100 ~~~G--ei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B          100 PRPG--QVLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             CCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             CCCC--CEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            3444  8999999999999999999999988777643

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.16  E-value=1.4e-05  Score=66.80  Aligned_cols=39  Identities=21%  Similarity=0.259  Sum_probs=31.9

Q ss_pred             CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624            3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      +..-+..+++++ +.+  ..++|+||||+|||||++.+.+..
T Consensus       593 ~~~~vlndisl~-~~g--~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          593 NEPFIANPLNLS-PQR--RMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             SSCCCCEEEEEC-SSS--CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceeeeccccc-CCC--cEEEEECCCCCChHHHHHHHHHHH
Confidence            344567788888 555  899999999999999999998754

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.16  E-value=2.3e-05  Score=67.10  Aligned_cols=40  Identities=23%  Similarity=0.206  Sum_probs=30.9

Q ss_pred             CCcccccccCCCC-----CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624            5 SAIDDDWELTSPS-----NGERTVVLVGRTGNGKSATGNSILGRRA   45 (174)
Q Consensus         5 ~~~~~~~~~~~~~-----~~~~~i~i~G~~g~GKStlin~l~~~~~   45 (174)
                      .-+..++++..+.     +....++|+||||+|||||++.+ |...
T Consensus       769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence            4467777887765     11389999999999999999998 6554

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.16  E-value=1.8e-06  Score=69.21  Aligned_cols=30  Identities=17%  Similarity=0.227  Sum_probs=27.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..++++|+||||||||++.|+|...+..|.
T Consensus        26 ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~   55 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVLKILAGEIIPNFGD   55 (538)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSCCCTTC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence            899999999999999999999998776664

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.15  E-value=7.9e-07  Score=62.13  Aligned_cols=24  Identities=38%  Similarity=0.566  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..++|+||||||||||++.|++..
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            689999999999999999998854

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.14  E-value=4.5e-07  Score=71.27  Aligned_cols=38  Identities=16%  Similarity=0.218  Sum_probs=32.3

Q ss_pred             ccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624           10 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus        10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      +++++++.|  .+++|+|+||||||||++.|+|...+..|
T Consensus       130 ~vsl~i~~G--e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G  167 (460)
T 2npi_A          130 KIRMSNFEG--PRVVIVGGSQTGKTSLSRTLCSYALKFNA  167 (460)
T ss_dssp             HHHHHSSSC--CCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred             cCceEeCCC--CEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence            456777777  99999999999999999999998766555

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.13  E-value=1.1e-06  Score=62.43  Aligned_cols=25  Identities=20%  Similarity=0.336  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRA   45 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~   45 (174)
                      ..++|+||||||||||++.|++..+
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCC
Confidence            7899999999999999999999765

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.12  E-value=4.2e-07  Score=69.35  Aligned_cols=39  Identities=23%  Similarity=0.395  Sum_probs=32.3

Q ss_pred             cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      +++++..+.+  ..++++|+||||||||+++|++...+..+
T Consensus       166 ~~l~~~i~~G--~~i~ivG~sGsGKSTll~~l~~~~~~~~g  204 (361)
T 2gza_A          166 SFLRRAVQLE--RVIVVAGETGSGKTTLMKALMQEIPFDQR  204 (361)
T ss_dssp             HHHHHHHHTT--CCEEEEESSSSCHHHHHHHHHTTSCTTSC
T ss_pred             HHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhcCCCCce
Confidence            4556666677  89999999999999999999998766544

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.12  E-value=8.1e-06  Score=62.12  Aligned_cols=27  Identities=33%  Similarity=0.386  Sum_probs=23.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFK   47 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~   47 (174)
                      ..++++|+||||||||+++|++...+.
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~~~~  150 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYLNNT  150 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccCC
Confidence            689999999999999999999876543

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.10  E-value=2.8e-05  Score=64.68  Aligned_cols=35  Identities=20%  Similarity=0.207  Sum_probs=29.2

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      .-+..+++++   +  ..++|+||||+|||||++.+.+..
T Consensus       566 ~~vl~disl~---g--~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          566 EFVPNDLEMA---H--ELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             CCCCEEEEES---S--CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             ceEeeeccCC---C--cEEEEECCCCCChHHHHHHHHhhh
Confidence            3456677777   4  799999999999999999998865

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.09  E-value=2.6e-06  Score=58.80  Aligned_cols=23  Identities=26%  Similarity=0.514  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..++++|++||||||+++.|++.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            78999999999999999999986

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.07  E-value=1.8e-06  Score=59.31  Aligned_cols=24  Identities=29%  Similarity=0.639  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..++++|++|||||||++.|++..
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            689999999999999999998854

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.07  E-value=1.6e-06  Score=68.33  Aligned_cols=41  Identities=17%  Similarity=-0.002  Sum_probs=33.0

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ...+++++++.   ..++|+|+||||||||+++|+|...+..|.
T Consensus        19 ~l~~vsl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~   59 (483)
T 3euj_A           19 GFFARTFDFDE---LVTTLSGGNGAGKSTTMAGFVTALIPDLTL   59 (483)
T ss_dssp             TEEEEEEECCS---SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred             cccceEEEEcc---ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence            35566777666   688999999999999999999977665553

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.06  E-value=2.2e-05  Score=53.60  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRA   45 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~   45 (174)
                      ..++++|++|+|||||++++++...
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            7899999999999999999998654

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.05  E-value=2.1e-06  Score=60.23  Aligned_cols=25  Identities=16%  Similarity=0.263  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ...++|+|++|||||||++.|.+..
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~~   30 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALARTL   30 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3799999999999999999998853

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.03  E-value=2.7e-06  Score=59.74  Aligned_cols=27  Identities=33%  Similarity=0.539  Sum_probs=23.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRA   45 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~   45 (174)
                      +...++|+|+||||||||++.|.+...
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            348999999999999999999988653

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.02  E-value=3e-06  Score=59.12  Aligned_cols=28  Identities=25%  Similarity=0.393  Sum_probs=23.9

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      .+.+  ..++++|++||||||+++.|.+..
T Consensus         3 i~~g--~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            3 NEKG--LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             -CCC--CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCC--CEEEEECCCCCCHHHHHHHHHHhh
Confidence            4445  789999999999999999998865

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.01  E-value=3.5e-06  Score=58.72  Aligned_cols=35  Identities=20%  Similarity=0.301  Sum_probs=22.1

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      -..++++++.+.+  ..|+++|++||||||+.+.|.+
T Consensus        13 ~~~~~~~~~~~~~--~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           13 LGTENLYFQSNAM--VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             -----------CC--CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCceeEecCCC--CEEEEEcCCCCCHHHHHHHHHH
Confidence            3467888888777  8999999999999999999875

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=98.01  E-value=1.8e-05  Score=60.37  Aligned_cols=80  Identities=15%  Similarity=0.146  Sum_probs=49.7

Q ss_pred             eEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCC---------HHHHHHHHHH
Q 030624           59 CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS---------QEEEAALHSL  129 (174)
Q Consensus        59 ~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~---------~~~~~~l~~l  129 (174)
                      .....+.+ ++..+.+|||+|...           .+..+..++.+++++|||+|.++ .+         ..-.+....+
T Consensus       191 i~~~~~~~-~~~~l~i~Dt~Gq~~-----------~r~~w~~~f~~~~~iIfv~dls~-~dq~l~ed~~~n~~~es~~~~  257 (362)
T 1zcb_A          191 IHEYDFEI-KNVPFKMVDVGGQRS-----------ERKRWFECFDSVTSILFLVSSSE-FDQVLMEDRQTNRLTESLNIF  257 (362)
T ss_dssp             EEEEEEEE-TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTC-TTCEETTEEEEEHHHHHHHHH
T ss_pred             eEEEEeee-CCeEEEEEeccchhh-----------hhhhHHHHhCCCCEEEEEEECcc-ccccccccccccHHHHHHHHH
Confidence            33344445 677899999999876           56667778899999999999984 21         1123333344


Q ss_pred             HHHHhhh--hcCcEEEEEeCcCCC
Q 030624          130 QTLFGKK--IFDYMIVVFTGGDEL  151 (174)
Q Consensus       130 ~~~~~~~--~~~~~~iv~tk~D~~  151 (174)
                      .......  ...|+++++||.|+.
T Consensus       258 ~~i~~~~~~~~~piILv~NK~DL~  281 (362)
T 1zcb_A          258 ETIVNNRVFSNVSIILFLNKTDLL  281 (362)
T ss_dssp             HHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             HHHhcchhhCCCCEEEEEEChhhh
Confidence            4443322  235899999999986

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.00  E-value=2.4e-06  Score=65.22  Aligned_cols=40  Identities=20%  Similarity=0.102  Sum_probs=30.0

Q ss_pred             cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 030624            9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS   48 (174)
Q Consensus         9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~   48 (174)
                      ..+.++...--..+++|+|+||||||||++.|+|...+..
T Consensus       159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~  198 (365)
T 1lw7_A          159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS  198 (365)
T ss_dssp             GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            3344555551138999999999999999999999765544

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.99  E-value=1.2e-06  Score=66.38  Aligned_cols=39  Identities=21%  Similarity=0.149  Sum_probs=31.8

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS   48 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~   48 (174)
                      +.++. ++...|  .+++++|+||+|||||++.|++...+..
T Consensus        61 ald~l-l~i~~G--q~~gIiG~nGaGKTTLl~~I~g~~~~~~   99 (347)
T 2obl_A           61 AIDGL-LTCGIG--QRIGIFAGSGVGKSTLLGMICNGASADI   99 (347)
T ss_dssp             HHHHH-SCEETT--CEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred             EEEee-eeecCC--CEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence            34555 677776  9999999999999999999999865443

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.97  E-value=4.2e-06  Score=58.40  Aligned_cols=27  Identities=37%  Similarity=0.741  Sum_probs=23.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      .+...++|+||+|||||||++.|++..
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            344889999999999999999999764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.97  E-value=1.7e-06  Score=73.41  Aligned_cols=37  Identities=22%  Similarity=0.226  Sum_probs=32.7

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..+.++++|+.+.|  .+++++|+||||||||++.|++.
T Consensus       448 ~~iL~~vsl~I~~G--e~v~LiGpNGsGKSTLLk~LagG  484 (986)
T 2iw3_A          448 KILLNKTQLRLKRA--RRYGICGPNGCGKSTLMRAIANG  484 (986)
T ss_dssp             EEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHHT
T ss_pred             EEeEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCC
Confidence            34577889999998  99999999999999999999953

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=97.96  E-value=0.00027  Score=55.18  Aligned_cols=127  Identities=17%  Similarity=0.132  Sum_probs=67.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhC-----------------CcccccccCCCCcceeeEEE----EEEEeC--CcEEE
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILG-----------------RRAFKSRASSSGVTSTCEMQ----RTVLKD--GQVVN   73 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~-----------------~~~~~~~~~~~~~t~~~~~~----~~~~~~--~~~~~   73 (174)
                      ..+...|+|+|+.++|||+|+|.|++                 ...|..+.....+|...-.-    ......  +..+.
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl  143 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred             CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence            34557899999999999999997752                 12333332333333332211    011112  23589


Q ss_pred             EEeCCCCCCCCCChHHHHHHHHHHH-HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhh-------hhcCcEEEEE
Q 030624           74 VIDTPGLFDFSAGSEFVGKEIVKCI-GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK-------KIFDYMIVVF  145 (174)
Q Consensus        74 ~iDtpG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~-------~~~~~~~iv~  145 (174)
                      ++||.|+.+...+.. ....+...+ ..+    +.+||=..  ..++..+.+.+..+.++...       ..++..+.++
T Consensus       144 llDTEG~~d~~~~~~-~d~~ifaLa~LLS----S~~IyN~~--~~i~~~~L~~L~~~tel~~~i~~~~~~~~Fp~f~wlv  216 (457)
T 4ido_A          144 LMDTQGTFDSQSTLR-DSATVFALSTMIS----SIQVYNLS--QNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLV  216 (457)
T ss_dssp             EEEECCBTCTTCCHH-HHHHHHHHHHHHC----SEEEEEEE--SSCCHHHHHHHHHHHHHHHHHSCCCSSCSEEEEEEEE
T ss_pred             EEeccCCCCcccCcc-ccHHHHHHHHHHh----hheeeccc--ccCCHHHHHHHHHHHHHHHHHhhhcccccCCceEEEE
Confidence            999999987654422 222222221 122    45555432  25666776777666655321       1123455666


Q ss_pred             eCcCC
Q 030624          146 TGGDE  150 (174)
Q Consensus       146 tk~D~  150 (174)
                      =-+-+
T Consensus       217 RDf~l  221 (457)
T 4ido_A          217 RDWSF  221 (457)
T ss_dssp             ETCCC
T ss_pred             ecCCc
Confidence            55543

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.96  E-value=2e-06  Score=67.17  Aligned_cols=40  Identities=18%  Similarity=0.067  Sum_probs=32.9

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      +.+++ ++...|  .+++|+|+||+|||||++.|++...+..+
T Consensus       147 vld~v-l~i~~G--q~~~IvG~sGsGKSTLl~~Iag~~~~~~G  186 (438)
T 2dpy_A          147 AINAL-LTVGRG--QRMGLFAGSGVGKSVLLGMMARYTRADVI  186 (438)
T ss_dssp             HHHHH-SCCBTT--CEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred             EEeee-EEecCC--CEEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence            45666 777777  99999999999999999999998755443

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.95  E-value=5.1e-06  Score=59.82  Aligned_cols=29  Identities=28%  Similarity=0.434  Sum_probs=25.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh---CCccccc
Q 030624           20 ERTVVLVGRTGNGKSATGNSIL---GRRAFKS   48 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~---~~~~~~~   48 (174)
                      ...++|+|++||||||+++.|+   |...+..
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~   58 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSS   58 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence            4689999999999999999999   8765543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.93  E-value=6.7e-06  Score=55.92  Aligned_cols=26  Identities=31%  Similarity=0.521  Sum_probs=22.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..+...++++|++||||||+.+.|.+
T Consensus         5 ~~~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            5 NHDHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            33448999999999999999999865

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.91  E-value=6.6e-06  Score=61.49  Aligned_cols=28  Identities=21%  Similarity=0.124  Sum_probs=24.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccc
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAF   46 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~   46 (174)
                      +...++|+|+||||||||++.|.+...+
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            3489999999999999999999986543

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.90  E-value=2.9e-06  Score=58.92  Aligned_cols=28  Identities=29%  Similarity=0.270  Sum_probs=24.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      .+++++|+||+|||||++.|++... ..|
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~G   29 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK-SSG   29 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence            4789999999999999999998765 444

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.89  E-value=8.1e-06  Score=57.34  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRA   45 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~   45 (174)
                      ..++++||+||||||+++.|++...
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhCC
Confidence            7899999999999999999998754

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.88  E-value=6.8e-06  Score=57.29  Aligned_cols=23  Identities=30%  Similarity=0.638  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..++++|++||||||+++.|.+.
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHh
Confidence            78999999999999999998753

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.86  E-value=2.6e-06  Score=67.80  Aligned_cols=36  Identities=25%  Similarity=0.244  Sum_probs=28.2

Q ss_pred             cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 030624           11 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS   48 (174)
Q Consensus        11 ~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~   48 (174)
                      +++..+.+  ..++++|+||||||||+++|++...+..
T Consensus       253 l~~~v~~g--~~i~I~GptGSGKTTlL~aL~~~i~~~~  288 (511)
T 2oap_1          253 LWLAIEHK--FSAIVVGETASGKTTTLNAIMMFIPPDA  288 (511)
T ss_dssp             HHHHHHTT--CCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred             HHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhCCCCC
Confidence            33444555  6799999999999999999999875543

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=97.86  E-value=2.4e-05  Score=60.38  Aligned_cols=80  Identities=15%  Similarity=0.140  Sum_probs=54.4

Q ss_pred             eEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC---------CCHHHHHHHHHH
Q 030624           59 CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR---------FSQEEEAALHSL  129 (174)
Q Consensus        59 ~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~---------~~~~~~~~l~~l  129 (174)
                      .....+.+ ++..+.+|||+|...           ++..+..++.+++++|||+|.++.         ... -.....++
T Consensus       207 i~~~~~~~-~~v~l~iwDtaGQe~-----------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns-~~e~~~~~  273 (402)
T 1azs_C          207 IFETKFQV-DKVNFHMFDVGGQRD-----------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNR-LQEALNLF  273 (402)
T ss_dssp             EEEEEEEE-TTEEEEEEEECCSGG-----------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBH-HHHHHHHH
T ss_pred             eEEEEeec-CCccceecccchhhh-----------hhhhhHhhccCCCEEEEEEECcccccccccccccch-HHHHHHHH
Confidence            33344445 567899999999886           566677789999999999999840         111 12334444


Q ss_pred             HHHHhhh--hcCcEEEEEeCcCCC
Q 030624          130 QTLFGKK--IFDYMIVVFTGGDEL  151 (174)
Q Consensus       130 ~~~~~~~--~~~~~~iv~tk~D~~  151 (174)
                      .......  ...|++++.||+|+.
T Consensus       274 ~~i~~~~~~~~~piiLvgNK~DL~  297 (402)
T 1azs_C          274 KSIWNNRWLRTISVILFLNKQDLL  297 (402)
T ss_dssp             HHHHTCTTCSSCCEEEEEECHHHH
T ss_pred             HHHHhcccCCCCeEEEEEEChhhh
Confidence            4443321  235899999999974

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.85  E-value=4.8e-06  Score=58.05  Aligned_cols=31  Identities=19%  Similarity=0.253  Sum_probs=25.4

Q ss_pred             ccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           12 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        12 ~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      .+..+.+  ..++++|++||||||+.+.|.+..
T Consensus        19 ~~~~~~g--~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           19 RLLDQKG--CVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             HHHTSCC--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HhcCCCC--eEEEEECCCCCCHHHHHHHHHHHH
Confidence            3444455  899999999999999999998765

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.85  E-value=3.9e-06  Score=68.95  Aligned_cols=33  Identities=27%  Similarity=0.356  Sum_probs=29.5

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~   41 (174)
                      ..++++++++.+  ..++|+|+||||||||++.++
T Consensus       337 ~L~~vsl~I~~G--e~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          337 NLKNVSVKIPLG--TFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TCCSEEEEEETT--SEEEEECSTTSSHHHHHTTTH
T ss_pred             ccccceeEecCC--CEEEEEeeCCCCHHHHHHHHH
Confidence            467889999998  999999999999999998764

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.82  E-value=8.5e-06  Score=60.75  Aligned_cols=27  Identities=19%  Similarity=0.185  Sum_probs=23.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      .+...++|+|++|||||||++.|.+..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l  104 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            344899999999999999999998853

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.82  E-value=9.4e-06  Score=55.93  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..++++|++||||||+++.|++
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            5789999999999999999986

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.82  E-value=1.2e-05  Score=58.21  Aligned_cols=30  Identities=20%  Similarity=0.353  Sum_probs=25.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh---CCcccccc
Q 030624           20 ERTVVLVGRTGNGKSATGNSIL---GRRAFKSR   49 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~---~~~~~~~~   49 (174)
                      ...|+|+|++||||||+.+.|.   |...+..|
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g   59 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLNWRLLDSG   59 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCC
Confidence            3789999999999999999999   76655443

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.80  E-value=1.4e-05  Score=54.70  Aligned_cols=32  Identities=28%  Similarity=0.391  Sum_probs=25.4

Q ss_pred             cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624            9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus         9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ++..+.+..+   ..+|+|+||+||||++++|...
T Consensus        18 ~~~~~~~~~g---~~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           18 KKVVIPFSKG---FTAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             SCEEEECCSS---EEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccEEEecCCC---cEEEECCCCCCHHHHHHHHHHH
Confidence            4555666654   7799999999999999998653

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.80  E-value=1.1e-05  Score=57.14  Aligned_cols=28  Identities=14%  Similarity=0.223  Sum_probs=24.0

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      .+.+  ..++|+|+||||||||++.|++..
T Consensus        22 i~~G--~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           22 IETQ--AITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EESS--EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCC--cEEEEECCCCCCHHHHHHHHHHHH
Confidence            3445  899999999999999999998843

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.78  E-value=9.7e-06  Score=62.94  Aligned_cols=27  Identities=30%  Similarity=0.309  Sum_probs=23.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFK   47 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~   47 (174)
                      ..++|+|+||||||||+++|++...+.
T Consensus       168 gii~I~GpnGSGKTTlL~allg~l~~~  194 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQELNSS  194 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence            689999999999999999999866443

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.76  E-value=7e-06  Score=60.68  Aligned_cols=39  Identities=15%  Similarity=0.079  Sum_probs=31.8

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK   47 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~   47 (174)
                      ..+++.+..+.+  ..++|+|+||+|||||++.|++...+.
T Consensus        24 ~Ld~i~~~l~~G--~~~~i~G~~G~GKTTl~~~ia~~~~~~   62 (296)
T 1cr0_A           24 GINDKTLGARGG--EVIMVTSGSGMGKSTFVRQQALQWGTA   62 (296)
T ss_dssp             THHHHHCSBCTT--CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCCC--eEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            355667778887  899999999999999999988765443

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.75  E-value=1.3e-05  Score=61.29  Aligned_cols=26  Identities=31%  Similarity=0.397  Sum_probs=23.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAF   46 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~   46 (174)
                      ..++++|+||||||||++.|++...+
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~~~~  162 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDYINQ  162 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            78999999999999999999987654

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.75  E-value=2.1e-05  Score=56.06  Aligned_cols=29  Identities=24%  Similarity=0.257  Sum_probs=24.7

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           13 LTSPSNGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        13 ~~~~~~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .+.+.+  ..++|.|++||||||+++.|.+.
T Consensus        15 ~~~~~g--~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           15 AEGTQP--FTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TTTCCC--EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCCc--eEEEEECCCCCCHHHHHHHHHhc
Confidence            344555  89999999999999999999875

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.72  E-value=7e-06  Score=65.59  Aligned_cols=39  Identities=23%  Similarity=0.221  Sum_probs=32.0

Q ss_pred             CCccccccc-CCCCCCceEEEEEcCCCCCHHHHHHH--HhCCcc
Q 030624            5 SAIDDDWEL-TSPSNGERTVVLVGRTGNGKSATGNS--ILGRRA   45 (174)
Q Consensus         5 ~~~~~~~~~-~~~~~~~~~i~i~G~~g~GKStlin~--l~~~~~   45 (174)
                      ....+++++ ..+.+  ..++++|+||||||||++.  +.|...
T Consensus        25 ~~~Ld~i~~G~i~~G--e~~~l~G~nGsGKSTL~~~~ll~Gl~~   66 (525)
T 1tf7_A           25 IEGFDDISHGGLPIG--RSTLVSGTSGTGKTLFSIQFLYNGIIE   66 (525)
T ss_dssp             CTTHHHHTTSSEETT--SEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred             chhHHHhcCCCCCCC--eEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            345677888 88888  9999999999999999999  456543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.71  E-value=1.5e-05  Score=54.01  Aligned_cols=23  Identities=39%  Similarity=0.702  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..|+++|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999874

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.70  E-value=0.00081  Score=56.99  Aligned_cols=30  Identities=23%  Similarity=0.263  Sum_probs=26.7

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHH
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGN   38 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin   38 (174)
                      ..++++++++.+  ..++|+|+||||||||++
T Consensus       599 ~Lk~Vsl~I~~G--eiv~I~G~SGSGKSTLl~  628 (916)
T 3pih_A          599 NLKNIDVEIPLG--VFVCVTGVSGSGKSSLVM  628 (916)
T ss_dssp             TCCSEEEEEESS--SEEEEECSTTSSHHHHHH
T ss_pred             cccccceEEcCC--cEEEEEccCCCChhhhHH
Confidence            367888999999  999999999999999973

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.68  E-value=8e-06  Score=59.93  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=26.0

Q ss_pred             ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624            8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus         8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      .+++.+..+.+    ++++|++|+|||||+++|++..
T Consensus        36 l~~~~l~~~~G----vlL~Gp~GtGKTtLakala~~~   68 (274)
T 2x8a_A           36 FKALGLVTPAG----VLLAGPPGCGKTLLAKAVANES   68 (274)
T ss_dssp             HHHTTCCCCSE----EEEESSTTSCHHHHHHHHHHHT
T ss_pred             HHHcCCCCCCe----EEEECCCCCcHHHHHHHHHHHc
Confidence            34455565554    8999999999999999999753

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.65  E-value=7.5e-05  Score=51.82  Aligned_cols=82  Identities=7%  Similarity=0.013  Sum_probs=49.3

Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCc
Q 030624           69 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  148 (174)
Q Consensus        69 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~  148 (174)
                      ...+.++|+|+...     .    .....+..    +|.+++++..+ ..+......++.+.+........++.+|+|++
T Consensus        75 ~yD~viiD~~~~~~-----~----~~~~~l~~----ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~  140 (206)
T 4dzz_A           75 DYDFAIVDGAGSLS-----V----ITSAAVMV----SDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK  140 (206)
T ss_dssp             TSSEEEEECCSSSS-----H----HHHHHHHH----CSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred             CCCEEEEECCCCCC-----H----HHHHHHHH----CCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            35689999998764     1    12223333    48899999887 44433466666666542212223568999999


Q ss_pred             CCCCCChhhHHHHhcc
Q 030624          149 DELEDNDETLEDYLGR  164 (174)
Q Consensus       149 D~~~~~~~~~~~~~~~  164 (174)
                      |........+.+++++
T Consensus       141 ~~~~~~~~~~~~~l~~  156 (206)
T 4dzz_A          141 IEMATMLNVLKESIKD  156 (206)
T ss_dssp             CTTEEEEHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHH
Confidence            9654332445666554

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.62  E-value=3.2e-05  Score=57.94  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      -+.++|+|++|||||||+|.|++..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            3688999999999999999999864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.62  E-value=5.1e-05  Score=52.98  Aligned_cols=25  Identities=16%  Similarity=0.234  Sum_probs=22.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ...++++|++||||||+.+.|.+..
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3889999999999999999999863

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.61  E-value=7.3e-06  Score=59.36  Aligned_cols=34  Identities=26%  Similarity=0.369  Sum_probs=28.9

Q ss_pred             cccccccCCCC---CCceEEEEEcCCCCCHHHHHHHHhC
Q 030624            7 IDDDWELTSPS---NGERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus         7 ~~~~~~~~~~~---~~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      +.++++++...   +  ..|+|+|++||||||+.+.|.+
T Consensus        34 ~l~~~~~~i~~~l~g--~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           34 ILKKKAEEVKPYLNG--RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             HHHHHHHTTHHHHTT--CCEEEECSTTSCHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhcCC--CEEEEECCCCCCHHHHHHHHHH
Confidence            45667777777   6  7999999999999999999875

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.60  E-value=1.2e-05  Score=54.96  Aligned_cols=26  Identities=15%  Similarity=0.183  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAF   46 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~   46 (174)
                      ..++|+|++|||||||++.|++...+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~   28 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRE   28 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            57899999999999999999987644

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.60  E-value=2.4e-05  Score=59.95  Aligned_cols=33  Identities=18%  Similarity=0.261  Sum_probs=28.0

Q ss_pred             cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624            9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus         9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .++++..+.+  ..++++|++|+|||||++.|++.
T Consensus       160 ~~~~~~i~~~--~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          160 KCMVYNIPKK--RYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             HHHHHCCTTC--CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HhcccccCCC--CEEEEECCCCCCHHHHHHHHHhh
Confidence            4456677777  89999999999999999999864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.60  E-value=4.1e-05  Score=57.37  Aligned_cols=26  Identities=19%  Similarity=0.204  Sum_probs=22.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .....++|+|++|||||||++.|.+.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999988654

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.59  E-value=3.4e-05  Score=53.86  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ...++++|++||||||+.+.|....
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhC
Confidence            3689999999999999999997643

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.59  E-value=4.4e-05  Score=53.26  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..++++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999987

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.58  E-value=2.1e-05  Score=59.99  Aligned_cols=29  Identities=28%  Similarity=0.350  Sum_probs=23.3

Q ss_pred             ccccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 030624           10 DWELTSPSNGERTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus        10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~   41 (174)
                      +..+.++.+   ..+|+|+|||||||++++|+
T Consensus        16 ~~~i~~~~g---~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           16 NVDIEFQSG---ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEECCSE---EEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEecCCC---eEEEECCCCCCHHHHHHHHH
Confidence            445666654   56799999999999999987

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.58  E-value=4.6e-05  Score=53.13  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      +...++++|++||||||+++.|.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            348999999999999999999875

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.57  E-value=0.00013  Score=54.90  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..+++.|++|+||||+++.+++
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3489999999999999999988

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=97.57  E-value=0.00011  Score=55.83  Aligned_cols=72  Identities=11%  Similarity=0.091  Sum_probs=48.1

Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCC-------CCCCHH-HHHHHHHHHHHHhhh--hc
Q 030624           69 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-------SRFSQE-EEAALHSLQTLFGKK--IF  138 (174)
Q Consensus        69 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-------~~~~~~-~~~~l~~l~~~~~~~--~~  138 (174)
                      ...+.+|||+|...           ++..+..++.+++++++|+|.+       +.-+.. -.....++.+.....  ..
T Consensus       182 ~v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~  250 (354)
T 2xtz_A          182 GEVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK  250 (354)
T ss_dssp             --EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred             ceeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence            35789999999987           5666677899999999999986       111111 133334444443321  23


Q ss_pred             CcEEEEEeCcCCC
Q 030624          139 DYMIVVFTGGDEL  151 (174)
Q Consensus       139 ~~~~iv~tk~D~~  151 (174)
                      .|++++.||+|+.
T Consensus       251 ~piiLvgNK~DL~  263 (354)
T 2xtz_A          251 TSFMLFLNKFDIF  263 (354)
T ss_dssp             CEEEEEEECHHHH
T ss_pred             CeEEEEEECcchh
Confidence            5899999999984

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.57  E-value=5.8e-05  Score=51.84  Aligned_cols=31  Identities=19%  Similarity=0.454  Sum_probs=23.7

Q ss_pred             cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           11 WELTSPSNGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        11 ~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ++++.+.+  ..|+++|++||||||+.+.|...
T Consensus         3 ~~~~~~~~--~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            3 GSMEQPKG--INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ---CCCSS--CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCcCCCCC--CEEEEECCCCCCHHHHHHHHHHh
Confidence            34555555  88999999999999999998764

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.56  E-value=2.7e-05  Score=53.84  Aligned_cols=24  Identities=29%  Similarity=0.544  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      +-|+|+||+|||||||++.|+...
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            347899999999999999998654

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.56  E-value=3.8e-05  Score=54.25  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .+|+++|++||||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.54  E-value=3.8e-05  Score=53.44  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999976

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.54  E-value=3.4e-05  Score=55.60  Aligned_cols=31  Identities=29%  Similarity=0.517  Sum_probs=24.2

Q ss_pred             ccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           10 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ++++..+.+    ++++|++|+|||||+++|++..
T Consensus        43 ~~~~~~~~g----~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           43 EMGARIPKG----VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             HTTCCCCSE----EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HcCCCCCCe----EEEECCCCCCHHHHHHHHHHHh
Confidence            344444443    8999999999999999998753

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.53  E-value=3.1e-05  Score=51.57  Aligned_cols=26  Identities=19%  Similarity=0.263  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRA   45 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~   45 (174)
                      ...++++|++|+|||||++++.+...
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            36899999999999999999998653

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.51  E-value=1.1e-05  Score=62.44  Aligned_cols=33  Identities=24%  Similarity=0.211  Sum_probs=26.6

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..+++++++..+   .++|+|+||||||||+++|.+
T Consensus        50 ~l~~v~l~~~~G---~~~lvG~NGaGKStLl~aI~~   82 (415)
T 4aby_A           50 TITQLELELGGG---FCAFTGETGAGKSIIVDALGL   82 (415)
T ss_dssp             TEEEEEEECCSS---EEEEEESHHHHHHHHTHHHHH
T ss_pred             ceeeEEEecCCC---cEEEECCCCCCHHHHHHHHHH
Confidence            345667777665   889999999999999998854

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.49  E-value=8.2e-05  Score=49.47  Aligned_cols=21  Identities=33%  Similarity=0.615  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~   41 (174)
                      ...+|+|+||+||||++.+|.
T Consensus        24 g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            467999999999999999975

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.48  E-value=4.7e-05  Score=55.70  Aligned_cols=31  Identities=29%  Similarity=0.517  Sum_probs=24.3

Q ss_pred             ccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           10 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ++++..+.+    ++++|++|+|||||+++|++..
T Consensus        67 ~~~~~~~~g----vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           67 EMGARIPKG----VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             HTTCCCCCE----EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HcCCCCCCe----EEEECCCcChHHHHHHHHHHHc
Confidence            344444443    8999999999999999998754

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.47  E-value=6.8e-05  Score=56.18  Aligned_cols=33  Identities=21%  Similarity=0.274  Sum_probs=25.5

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~   41 (174)
                      ++.++..+.+..+   ..+|+|+||+|||||+++|.
T Consensus        13 ~~~~~~~l~~~~g---~~~i~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A           13 SFGRPSLIGFSDR---VTAIVGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             TBCSCEEEECCSS---EEEEECCTTTCSTHHHHHHH
T ss_pred             eecCCeEEecCCC---cEEEECCCCCcHHHHHHHHH
Confidence            3334455666554   78999999999999999987

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.47  E-value=6e-05  Score=51.52  Aligned_cols=23  Identities=13%  Similarity=0.289  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..++++|++|+|||||++.|++.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            67899999999999999999875

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.46  E-value=0.0011  Score=51.69  Aligned_cols=23  Identities=26%  Similarity=0.523  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      +-+++.||+|+|||+|.+++++.
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            67999999999999999999874

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.45  E-value=8.7e-05  Score=54.86  Aligned_cols=28  Identities=25%  Similarity=0.299  Sum_probs=23.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..+...|+|+|++|||||||.+.|.+..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l   55 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3455899999999999999999887643

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.44  E-value=9e-05  Score=53.47  Aligned_cols=26  Identities=23%  Similarity=0.268  Sum_probs=21.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ......|+|.|++||||||+.+.|..
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            33447899999999999999988855

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.0013  Score=51.20  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      +-+++.||+|+|||+|.+++++.
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            56999999999999999999864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.42  E-value=6.2e-05  Score=53.13  Aligned_cols=29  Identities=21%  Similarity=0.378  Sum_probs=23.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           14 TSPSNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        14 ~~~~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..+.+  ..++++|++|+|||||++.|++..
T Consensus        19 gi~~G--~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           19 GIPQG--FFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             SEETT--CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcCC--CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34555  789999999999999999988543

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.41  E-value=8.7e-06  Score=58.10  Aligned_cols=29  Identities=24%  Similarity=0.210  Sum_probs=24.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSR   49 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~   49 (174)
                      ..++|+||||||||||+++|++...+..|
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G   56 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALIPDLT   56 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccccCCC
Confidence            35689999999999999999987665544

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.40  E-value=6.3e-05  Score=52.31  Aligned_cols=23  Identities=35%  Similarity=0.683  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..|+|+|++||||||+.+.|.+.
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998643

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.40  E-value=0.0017  Score=50.42  Aligned_cols=23  Identities=26%  Similarity=0.569  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      +-|++.||+|+|||+|.+++++.
T Consensus       217 rGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          217 KGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             SEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCceECCCCchHHHHHHHHHHH
Confidence            66999999999999999999875

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.39  E-value=0.0001  Score=49.58  Aligned_cols=23  Identities=17%  Similarity=0.144  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..|+++|++||||||+.+.|...
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998753

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.38  E-value=0.0017  Score=46.64  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .-+++.|++|+|||++.+++...
T Consensus        40 ~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            56899999999999999999863

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.36  E-value=0.00012  Score=55.71  Aligned_cols=32  Identities=19%  Similarity=0.159  Sum_probs=26.1

Q ss_pred             ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624            8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus         8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..+.++.++.+   ..+++|+||+||||++++|..
T Consensus        17 ~~~~~~~~~~g---~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           17 LAPGTLNFPEG---VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             CCSEEEECCSE---EEEEECCTTSSHHHHHHHHHH
T ss_pred             eeeeEEEEcCC---eEEEECCCCCChhHHHHHHHH
Confidence            35566777664   789999999999999999874

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.36  E-value=0.00012  Score=49.30  Aligned_cols=20  Identities=25%  Similarity=0.579  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSI   40 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l   40 (174)
                      +.|+++|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999998

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.002  Score=49.67  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      +-+++.||+|+|||+|.+++++.
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHHh
Confidence            56899999999999999999874

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.33  E-value=0.00015  Score=49.53  Aligned_cols=23  Identities=22%  Similarity=0.527  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ...|+++|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999873

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.33  E-value=0.00015  Score=49.09  Aligned_cols=22  Identities=23%  Similarity=0.534  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+++|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5789999999999999999986

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.32  E-value=0.00013  Score=49.63  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ...++++|++||||||+.+.|.+.
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            378999999999999999999874

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.32  E-value=0.00062  Score=53.04  Aligned_cols=23  Identities=17%  Similarity=0.414  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      +-+++.||+|+|||+|.+++++.
T Consensus       216 rGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          216 KGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeeEEECcCCCCHHHHHHHHHHH
Confidence            67999999999999999999874

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.31  E-value=0.00022  Score=48.82  Aligned_cols=26  Identities=23%  Similarity=0.282  Sum_probs=22.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      +...|+++|.+||||||+.+.|....
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l   37 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLL   37 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34889999999999999999987643

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.29  E-value=0.0012  Score=48.04  Aligned_cols=23  Identities=22%  Similarity=0.504  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..+++.|++|+|||++++++.+.
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            56999999999999999999764

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.29  E-value=0.0014  Score=51.28  Aligned_cols=23  Identities=26%  Similarity=0.592  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      +-|++.||+|+|||+|.+++++.
T Consensus       244 rGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          244 KGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             SEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CceEeeCCCCCcHHHHHHHHHhc
Confidence            67999999999999999999874

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.29  E-value=0.0002  Score=49.90  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      +...|+++|.+||||||+.+.|...
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            3478999999999999999998753

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.29  E-value=0.00017  Score=48.92  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..|+++|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999999864

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.28  E-value=0.00017  Score=49.37  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|++.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999865

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.25  E-value=0.00021  Score=49.96  Aligned_cols=21  Identities=33%  Similarity=0.615  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~   41 (174)
                      ...+|+|+||+||||++.+|.
T Consensus        24 ~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHH
Confidence            477899999999999999864

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.23  E-value=0.0002  Score=49.56  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 030624           22 TVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~   42 (174)
                      .|+++|++||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999876

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.23  E-value=0.00017  Score=50.47  Aligned_cols=26  Identities=12%  Similarity=-0.019  Sum_probs=22.9

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      .+.+  ..++++|++|+|||||++.+++
T Consensus        17 i~~G--~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           17 FAPG--VLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             BCTT--SEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCC--EEEEEECCCCCCHHHHHHHHHH
Confidence            4455  7899999999999999999987

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.22  E-value=0.00024  Score=49.13  Aligned_cols=26  Identities=19%  Similarity=0.289  Sum_probs=22.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ++...|+|+|++||||||+.+.|...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            34478999999999999999998864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.22  E-value=0.00022  Score=48.85  Aligned_cols=22  Identities=14%  Similarity=0.421  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999864

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.22  E-value=5.9e-05  Score=63.87  Aligned_cols=33  Identities=27%  Similarity=0.356  Sum_probs=29.6

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~   41 (174)
                      ..++++++++.|  ..++|+|+||||||||++.++
T Consensus       639 ~Lk~Vsl~I~~G--eiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          639 NLKNVSVKIPLG--TFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             SCCSEEEEEESS--SEEECCBCTTSSHHHHHTTTH
T ss_pred             ccccceEEEcCC--CEEEEEcCCCCCHHHHHHHHH
Confidence            467889999999  999999999999999999864

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.22  E-value=0.00027  Score=52.13  Aligned_cols=26  Identities=23%  Similarity=0.460  Sum_probs=22.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ......++++|++||||||+.+.|..
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            33457899999999999999999864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.19  E-value=0.00016  Score=54.46  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..++++||+|+|||||++.|++..
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            468999999999999999998864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.19  E-value=0.00026  Score=48.12  Aligned_cols=23  Identities=17%  Similarity=0.202  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..++++|++|||||||++.|+..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999999999998764

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.18  E-value=0.00025  Score=48.41  Aligned_cols=22  Identities=27%  Similarity=0.608  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999864

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.17  E-value=0.00025  Score=48.50  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..|++.|++||||||+.+.|...
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999998753

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.17  E-value=0.00034  Score=49.85  Aligned_cols=33  Identities=21%  Similarity=0.247  Sum_probs=23.2

Q ss_pred             cccCCC-CCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           11 WELTSP-SNGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        11 ~~~~~~-~~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .+++.. ......|++.|++||||||+++.|...
T Consensus        16 ~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           16 ENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             ----CCCCCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            344443 223488999999999999999998764

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.17  E-value=0.0002  Score=50.87  Aligned_cols=23  Identities=13%  Similarity=0.202  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..++++|++|+|||||+..|++.
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            78999999999999999999873

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.17  E-value=0.00036  Score=48.37  Aligned_cols=24  Identities=17%  Similarity=0.404  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ....|+++|++||||||+.+.|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999988864

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.16  E-value=0.0003  Score=48.87  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..|++.|++||||||+.+.|...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            78999999999999999998753

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.16  E-value=0.00025  Score=49.65  Aligned_cols=21  Identities=33%  Similarity=0.664  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 030624           22 TVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~   42 (174)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999854

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.16  E-value=0.0003  Score=48.22  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ...|+++|++||||||+.+.|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999988754

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.15  E-value=0.00036  Score=48.34  Aligned_cols=24  Identities=25%  Similarity=0.446  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ....|+++|++||||||+.+.|..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998864

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.15  E-value=0.00029  Score=53.13  Aligned_cols=21  Identities=33%  Similarity=0.615  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~   41 (174)
                      ...+|+|+||+||||++.+|+
T Consensus        24 ~~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           24 GINLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            466899999999999999874

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.14  E-value=0.0003  Score=50.89  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..++|+|++||||||+.+.|++.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhc
Confidence            46899999999999999998753

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.13  E-value=4.9e-05  Score=63.73  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=29.7

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHH-HhC
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNS-ILG   42 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~-l~~   42 (174)
                      ..++++++++.+  ..++|+|+||||||||++. |++
T Consensus       512 ~L~~vsl~i~~G--eiv~I~G~nGSGKSTLl~~~L~g  546 (842)
T 2vf7_A          512 NLDNLDVRFPLG--VMTSVTGVSGSGKSTLVSQALVD  546 (842)
T ss_dssp             TEEEEEEEEESS--SEEEEECCTTSSHHHHCCCCCHH
T ss_pred             ccccceEEEcCC--CEEEEEcCCCcCHHHHHHHHHHH
Confidence            357888999999  9999999999999999996 553

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.13  E-value=0.00022  Score=55.48  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ...+|+|+||+|||||+++|.+..
T Consensus        27 ~~~~i~G~nG~GKstll~ai~~~~   50 (430)
T 1w1w_A           27 NFTSIIGPNGSGKSNMMDAISFVL   50 (430)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhh
Confidence            688999999999999999987644

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.13  E-value=0.00032  Score=48.55  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..|+++|++||||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            68999999999999999999865

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.12  E-value=0.00029  Score=49.35  Aligned_cols=21  Identities=38%  Similarity=0.718  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 030624           22 TVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~   42 (174)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.11  E-value=0.00023  Score=52.03  Aligned_cols=23  Identities=26%  Similarity=0.291  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..++|+|++|+|||||+..+++.
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            78999999999999999988863

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.11  E-value=0.00033  Score=48.14  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+++|++||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.10  E-value=0.00037  Score=48.93  Aligned_cols=22  Identities=36%  Similarity=0.539  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+|+|++||||||+.+.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999875

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.09  E-value=0.00038  Score=47.31  Aligned_cols=22  Identities=27%  Similarity=0.601  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+++|++||||||+.+.|..
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            6799999999999999999874

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.09  E-value=0.00028  Score=47.80  Aligned_cols=22  Identities=27%  Similarity=0.588  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      .+|+++|++||||||+.+.|..
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3689999999999999999865

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.06  E-value=0.0004  Score=48.88  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+++|++||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999998864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.05  E-value=0.00039  Score=48.50  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+++|++||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999874

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.04  E-value=0.00014  Score=55.21  Aligned_cols=31  Identities=13%  Similarity=0.134  Sum_probs=26.2

Q ss_pred             ccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           12 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        12 ~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ...++.+  ..++|+|++|+|||||++.+++..
T Consensus       125 ~ggi~~G--~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          125 GGGIETQ--AITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             TSSEESS--EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCCCCC--eEEEEECCCCCCHHHHHHHHHHHh
Confidence            3456666  899999999999999999998764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.04  E-value=0.00045  Score=51.22  Aligned_cols=66  Identities=12%  Similarity=0.011  Sum_probs=43.8

Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC-CHHH-HHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEE-EAALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                      ..+.+||+  ..+..           ...+.++..+|++++|+|++++. +... ..|+..+..   .  ..|+++|+||
T Consensus        63 ~~~~iwD~--qer~~-----------~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~--~~piilv~NK  124 (301)
T 1u0l_A           63 GSGVIENV--LHRKN-----------LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---N--ELETVMVINK  124 (301)
T ss_dssp             SSEEEEEE--CCCSC-----------EETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---T--TCEEEEEECC
T ss_pred             CeEEEEEE--ccccc-----------eeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---C--CCCEEEEEeH
Confidence            47899999  44321           22224678899999999998554 3332 445544433   1  2689999999


Q ss_pred             cCCCCC
Q 030624          148 GDELED  153 (174)
Q Consensus       148 ~D~~~~  153 (174)
                      +|+...
T Consensus       125 ~DL~~~  130 (301)
T 1u0l_A          125 MDLYDE  130 (301)
T ss_dssp             GGGCCH
T ss_pred             HHcCCc
Confidence            999754

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.04  E-value=0.0096  Score=45.05  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      .++|.|++|+|||||++.+.+..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999999998754

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.04  E-value=0.00031  Score=50.66  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .....++++|++||||||+.+.|...
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            33478999999999999999998754

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.03  E-value=0.00038  Score=49.23  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+|+|++||||||+.+.|..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999863

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.02  E-value=0.00048  Score=49.44  Aligned_cols=24  Identities=17%  Similarity=0.390  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      +..+|+++|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999864

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.02  E-value=0.0002  Score=57.52  Aligned_cols=26  Identities=31%  Similarity=0.428  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRA   45 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~   45 (174)
                      ...++|+|++|||||||++.|.+...
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHHhhc
Confidence            38999999999999999999988653

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.01  E-value=0.00041  Score=48.56  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..|+++|++||||||+.+.|.+..
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~~l   49 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEHQL   49 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            789999999999999999987643

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.01  E-value=0.00015  Score=50.71  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 030624           22 TVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .|+|.|++||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999998764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.01  E-value=0.00046  Score=46.25  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 030624           22 TVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~   42 (174)
                      +|+++|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.00  E-value=0.0075  Score=45.01  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .-+++.|++|+|||+|.+++.+.
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            67999999999999999999864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.00  E-value=0.00067  Score=46.34  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+++|++||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.99  E-value=0.00032  Score=47.72  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=16.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ...|+++|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999864

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.99  E-value=0.0047  Score=48.74  Aligned_cols=22  Identities=32%  Similarity=0.662  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 030624           22 TVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~   43 (174)
                      -++++|++|+|||+|++++.+.
T Consensus        51 gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           51 GILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999874

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.98  E-value=0.0005  Score=49.14  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..++|.|++||||||+.+.|..
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999873

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.96  E-value=0.0005  Score=47.30  Aligned_cols=22  Identities=18%  Similarity=0.576  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+++|++||||||+.+.|..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.95  E-value=0.00043  Score=48.78  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.94  E-value=0.00054  Score=46.90  Aligned_cols=21  Identities=19%  Similarity=0.461  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 030624           22 TVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~   42 (174)
                      .|+++|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.93  E-value=0.00063  Score=48.47  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      +..+|+|+|++||||||+.+.|.+
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999999875

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.93  E-value=0.00052  Score=48.07  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 030624           22 TVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~   42 (174)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.92  E-value=0.00036  Score=52.85  Aligned_cols=34  Identities=26%  Similarity=0.297  Sum_probs=27.1

Q ss_pred             ccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           10 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .+++..+.+....++++|++|+||||+.+.|++.
T Consensus        14 ~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A           14 LLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             HHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence            3445566676677999999999999999987764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.91  E-value=0.00048  Score=46.97  Aligned_cols=22  Identities=41%  Similarity=0.626  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      .+|+++|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988854

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.91  E-value=0.00056  Score=48.05  Aligned_cols=24  Identities=17%  Similarity=0.297  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..+++.|++|+||||+++.+....
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999987643

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.91  E-value=0.00068  Score=49.11  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+++|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            6899999999999999999865

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.90  E-value=0.00052  Score=46.15  Aligned_cols=22  Identities=23%  Similarity=0.539  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+++|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.89  E-value=0.00072  Score=46.85  Aligned_cols=25  Identities=20%  Similarity=0.377  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ....|+++|..||||||+.+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            3578999999999999999988643

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.88  E-value=0.00077  Score=49.47  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 030624           19 GERTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~   41 (174)
                      ....|+|+|++||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999999986

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.87  E-value=0.012  Score=40.54  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 030624           22 TVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .+++.|++|+|||++++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.85  E-value=0.0007  Score=47.85  Aligned_cols=21  Identities=29%  Similarity=0.670  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 030624           22 TVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~   42 (174)
                      .|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.85  E-value=0.00051  Score=49.47  Aligned_cols=23  Identities=35%  Similarity=0.680  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .-+++.|++|+||||+++++.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            45899999999999999999864

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.82  E-value=0.00068  Score=53.79  Aligned_cols=32  Identities=28%  Similarity=0.505  Sum_probs=24.5

Q ss_pred             cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624            9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus         9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      .++.+..+.+    ++++|++|+|||+|+++|.+..
T Consensus        57 ~~lg~~ip~G----vLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           57 HEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             TTTSCCCCSE----EEEECSSSSSHHHHHHHHHHHT
T ss_pred             hhccCCCCce----EEEECCCCCCHHHHHHHHHHHh
Confidence            3444444443    8999999999999999998753

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.80  E-value=0.0005  Score=52.48  Aligned_cols=29  Identities=21%  Similarity=0.417  Sum_probs=22.2

Q ss_pred             ccccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 030624           10 DWELTSPSNGERTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus        10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~   41 (174)
                      +..+.+.+   ...+|+|+||+||||++.+|.
T Consensus        18 ~~~i~f~~---gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           18 NSRIKFEK---GIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEECCS---EEEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEecCC---CeEEEECCCCCCHHHHHHHHH
Confidence            33445444   477999999999999999864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.80  E-value=0.00078  Score=47.34  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999854

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.79  E-value=0.00096  Score=45.12  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..+++.|++|+|||++++.+....
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHH
Confidence            568999999999999999987653

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.78  E-value=0.0011  Score=46.92  Aligned_cols=24  Identities=17%  Similarity=0.540  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .+.|.++|++||||+|....|+..
T Consensus        29 ~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           29 AKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            367888999999999998887653

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.76  E-value=0.0064  Score=50.92  Aligned_cols=70  Identities=16%  Similarity=0.266  Sum_probs=42.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+-|++.||+|+|||+|.+++++...                        ..++.++.+.+...  ......+.++....
T Consensus       238 p~GILL~GPPGTGKT~LAraiA~elg------------------------~~~~~v~~~~l~sk--~~gese~~lr~lF~  291 (806)
T 3cf2_A          238 PRGILLYGPPGTGKTLIARAVANETG------------------------AFFFLINGPEIMSK--LAGESESNLRKAFE  291 (806)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHTTTT------------------------CEEEEEEHHHHHSS--CTTHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC------------------------CeEEEEEhHHhhcc--cchHHHHHHHHHHH
Confidence            36799999999999999999997531                        11223444333221  11223444555555


Q ss_pred             hccCCceEEEEEEeCC
Q 030624          100 MAKDGIHAVLVVFSVR  115 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~  115 (174)
                      .+.....+|||+.+.+
T Consensus       292 ~A~~~~PsIIfIDEiD  307 (806)
T 3cf2_A          292 EAEKNAPAIIFIDELD  307 (806)
T ss_dssp             HHTTSCSEEEEEESGG
T ss_pred             HHHHcCCeEEEEehhc
Confidence            5555667788877655

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.75  E-value=0.00093  Score=47.84  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=21.7

Q ss_pred             cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624            9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus         9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      .+..|..+.++...|++.|++||||||+++.|..
T Consensus        16 ~~~~~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~   49 (236)
T 3lv8_A           16 ENLYFQSNAMNAKFIVIEGLEGAGKSTAIQVVVE   49 (236)
T ss_dssp             ----------CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred             cccccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4556666766678999999999999999999764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.73  E-value=0.00099  Score=46.68  Aligned_cols=23  Identities=22%  Similarity=0.459  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ++|+++|++||||+|....|+..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999888754

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.73  E-value=0.0011  Score=47.14  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ...|+|+|++||||||+.+.|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999864

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.71  E-value=0.00054  Score=50.55  Aligned_cols=23  Identities=17%  Similarity=0.351  Sum_probs=17.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ...|+|.|++||||||+.+.|..
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999988765

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.71  E-value=0.0011  Score=44.41  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+++|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999864

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.69  E-value=0.00024  Score=57.70  Aligned_cols=36  Identities=25%  Similarity=0.395  Sum_probs=28.0

Q ss_pred             ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624            8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA   45 (174)
Q Consensus         8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~   45 (174)
                      .+.+.+....+  ..++++|++|+|||||+++|.+...
T Consensus        50 l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           50 VEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             HHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             HhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence            33444455555  6899999999999999999998664

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.69  E-value=0.0014  Score=45.71  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..++|+|++|+|||||...|...
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            67999999999999999998864

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.68  E-value=0.0011  Score=45.85  Aligned_cols=21  Identities=24%  Similarity=0.436  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 030624           22 TVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~   42 (174)
                      .|+|.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999865

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.68  E-value=0.002  Score=47.37  Aligned_cols=51  Identities=12%  Similarity=0.107  Sum_probs=34.6

Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +.+...+..+|+++.|+|+.++........-    +..+   .+|.++|+||+|+...
T Consensus        15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~----~~l~---~kp~ilVlNK~DL~~~   65 (282)
T 1puj_A           15 REVTEKLKLIDIVYELVDARIPMSSRNPMIE----DILK---NKPRIMLLNKADKADA   65 (282)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSCHHHH----HHCS---SSCEEEEEECGGGSCH
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCCccCCHHHH----HHHC---CCCEEEEEECcccCCH
Confidence            3444455667999999999866665443322    2222   2689999999999864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.68  E-value=0.0002  Score=53.85  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      .+++.|++|+||||+++.+++..
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999998764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.68  E-value=0.00079  Score=47.85  Aligned_cols=25  Identities=32%  Similarity=0.563  Sum_probs=20.3

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHh
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l~   41 (174)
                      .+.+  ..++++|++|+|||||...++
T Consensus        20 l~~G--~~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           20 IPER--NVVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             EETT--CEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCC--cEEEEECCCCCCHHHHHHHHH
Confidence            4455  789999999999999976654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.67  E-value=0.0013  Score=49.04  Aligned_cols=25  Identities=36%  Similarity=0.460  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ...++|+||+|||||||...|+...
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            3678999999999999999987643

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.66  E-value=0.0015  Score=49.24  Aligned_cols=24  Identities=33%  Similarity=0.494  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..|+|+||+|+|||||...|+...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHC
Confidence            579999999999999999998754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.65  E-value=0.0012  Score=46.46  Aligned_cols=25  Identities=16%  Similarity=0.240  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ...+++.|++|+|||++++.+....
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~~   76 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACARA   76 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3689999999999999999987643

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.65  E-value=0.00071  Score=50.78  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..+++.|++|+||||+++.+.+..
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            348999999999999999998753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.63  E-value=0.0014  Score=48.30  Aligned_cols=22  Identities=23%  Similarity=0.534  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+++|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999999875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.62  E-value=0.0014  Score=45.34  Aligned_cols=24  Identities=25%  Similarity=0.259  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..+++.|++|+|||+|++++....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999999988644

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.61  E-value=0.0011  Score=49.00  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..+++.|++|+|||++.+++.+.
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            67999999999999999999864

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.61  E-value=0.00082  Score=51.59  Aligned_cols=31  Identities=23%  Similarity=0.255  Sum_probs=25.2

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           13 LTSPSNGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        13 ~~~~~~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      +..+.++..+++|+|++|+|||||++.|.+.
T Consensus       167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~  197 (422)
T 3ice_A          167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQS  197 (422)
T ss_dssp             HHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred             eeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence            4445555599999999999999999988764

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.59  E-value=0.0017  Score=47.84  Aligned_cols=24  Identities=21%  Similarity=0.436  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..+++.|++|+|||++.++|.+..
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            579999999999999999988754

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.58  E-value=0.012  Score=45.05  Aligned_cols=23  Identities=30%  Similarity=0.609  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..++|.|++|+|||+++++++..
T Consensus       149 ~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          149 RGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHh
Confidence            67999999999999999999754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.55  E-value=0.001  Score=53.14  Aligned_cols=31  Identities=16%  Similarity=0.208  Sum_probs=25.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 030624           14 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAF   46 (174)
Q Consensus        14 ~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~   46 (174)
                      ..+.+  ..++|+|++|+|||||++.+++...+
T Consensus       277 ~i~~G--~i~~i~G~~GsGKSTLl~~l~g~~~~  307 (525)
T 1tf7_A          277 GFFKD--SIILATGATGTGKTLLVSRFVENACA  307 (525)
T ss_dssp             SEESS--CEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred             CCCCC--cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            44555  78999999999999999999986543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.53  E-value=0.0013  Score=48.36  Aligned_cols=23  Identities=26%  Similarity=0.543  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..+++.|++|+|||++++++.+.
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            67999999999999999999864

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.53  E-value=0.0016  Score=49.03  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..|+|+|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            57999999999999999988754

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.53  E-value=0.00052  Score=54.69  Aligned_cols=31  Identities=26%  Similarity=0.278  Sum_probs=24.7

Q ss_pred             ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 030624            8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus         8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~   41 (174)
                      .++..+.+..+   ..+|+|+||+|||||+.+|.
T Consensus        51 ~~~~~l~f~~g---~n~i~G~NGaGKS~lleAl~   81 (517)
T 4ad8_A           51 ITQLELELGGG---FCAFTGETGAGKSIIVDALG   81 (517)
T ss_dssp             BSCEEEECCCS---EEEEEESHHHHHHHHTHHHH
T ss_pred             eeeEEEecCCC---eEEEEcCCCCCHHHHHHHHH
Confidence            34566666665   67899999999999999973

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.52  E-value=0.0013  Score=52.83  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ...++++||+|+|||||+++|.+..
T Consensus       108 g~~vll~Gp~GtGKTtlar~ia~~l  132 (543)
T 3m6a_A          108 GPILCLAGPPGVGKTSLAKSIAKSL  132 (543)
T ss_dssp             SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc
Confidence            3689999999999999999998754

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.51  E-value=0.0013  Score=44.37  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ...+++.|++|+|||++++.+....
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999987643

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.51  E-value=0.0022  Score=47.69  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..++|+||+|||||||...|...
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHHh
Confidence            67899999999999999998754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.49  E-value=0.0024  Score=49.50  Aligned_cols=25  Identities=36%  Similarity=0.324  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ....|+++|++||||||+.+.|...
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            4478999999999999999998764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.47  E-value=0.002  Score=48.24  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..|+|+|++||||||+...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	9e-28
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	4e-11
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	1e-06
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	1e-05
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	3e-04
d1t9ha2	231	c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C	0.001
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	0.002
d2c78a3	204	c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N	0.003
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	0.003
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	0.004

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  102 bits (254), Expect = 9e-28
 Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 5/162 (3%)

Query: 12  ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV 71
            L        T++++G+ G GKS+T NSI+G R        S       + R+    G  
Sbjct: 24  NLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSR--AGFT 81

Query: 72  VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSV-RSRFSQEEEAALHSLQ 130
           +N+IDTPGL +    ++     I     +    I  +L V  +   R    ++    ++ 
Sbjct: 82  LNIIDTPGLIEGGYINDMALNIIKSF--LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAIT 139

Query: 131 TLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKV 172
             FGK I++  IV  T       +    +++  +     L+V
Sbjct: 140 DSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQV 181

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (140), Expect = 4e-11
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 14/146 (9%)

Query: 12  ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC-EMQRTVLKDGQ 70
            L    +    V + G TG+GKS+  N++ G    +  A+ +GV     E       +  
Sbjct: 48  ALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP 107

Query: 71  VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQ 130
            V   D PG+   +   +   +++                +    +RF + +     ++ 
Sbjct: 108 NVVFWDLPGIGSTNFPPDTYLEKMKFY--------EYDFFIIISATRFKKNDIDIAKAIS 159

Query: 131 TLFGKKIFDYMIVVFTGGDELEDNDE 156
               K+       V T  D    N+ 
Sbjct: 160 M-MKKEF----YFVRTKVDSDITNEA 180

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.2 bits (103), Expect = 1e-06
 Identities = 23/147 (15%), Positives = 54/147 (36%), Gaps = 3/147 (2%)

Query: 22  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 81
            V LVG    GKS   + +   +     A     T    +      DG+   + D PGL 
Sbjct: 3   DVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60

Query: 82  DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM 141
           + +     +G + ++ I      I  V+ +  +  R   ++   ++   + +  ++ +  
Sbjct: 61  EGAHQGVGLGHQFLRHIERT-RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP 119

Query: 142 IVVFTGGDELEDNDETLEDYLGRECPK 168
            ++     ++ +  E LE +  +    
Sbjct: 120 QIIVANKMDMPEAAENLEAFKEKLTDD 146

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 41.2 bits (95), Expect = 1e-05
 Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 23  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 82
           V LVG    GKS+   ++         A     T +  +    + + +   + D PG+ +
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 61

Query: 83  FSAGSEFVGKEIVKCIGMAKDGIH 106
            ++  + +G E ++ I   +  ++
Sbjct: 62  GASEGKGLGLEFLRHIARTRVLLY 85

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.4 bits (85), Expect = 3e-04
 Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 17/150 (11%)

Query: 22  TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 81
           T++  GR+  GKS     + G++  + +    GVT             +   +ID PG  
Sbjct: 2   TIIFAGRSNVGKSTLIYRLTGKKVRRGKR--PGVTRKIIEIEW-----KNHKIIDMPGFG 54

Query: 82  DFSAGSEFVG-------KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG 134
                 + V           ++      D    V+   +      + E+     +   F 
Sbjct: 55  FMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFY 114

Query: 135 KKIFDY---MIVVFTGGDELEDNDETLEDY 161
           + + +     IV     D++++  E +   
Sbjct: 115 QFLRELDIPTIVAVNKLDKIKNVQEVINFL 144

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 8   DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK----SRASSSGVTSTCEMQR 63
            D      P   ++T V  G++G GKS+  N+I      +    S     G  +T  ++ 
Sbjct: 85  QDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL 144

Query: 64  TVLKDGQVVNVIDTPGL 80
                G    V DTPG 
Sbjct: 145 IHTSGGL---VADTPGF 158

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 23  VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 82
            +++G    GKS   N +  +   K+     G        +  +K G+ + ++DTPG+  
Sbjct: 115 ALIIGIPNVGKSTLINRLAKKNIAKT-----GDRPGITTSQQWVKVGKELELLDTPGILW 169

Query: 83  FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 121
                E VG  +    G  KD I  +  V     RF +E
Sbjct: 170 PKFEDELVGLRLA-VTGAIKDSIINLQDVAVFGLRFLEE 207

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 30/151 (19%)

Query: 23  VVLVGRTGNGKSATGNSIL---GRRAFKSRASSSGVTSTCEMQR-----------TVLKD 68
           V  +G   +GK+    ++                G       +R                
Sbjct: 6   VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 65

Query: 69  GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS 128
            +  + +D PG  D+        K ++       DG  A+LVV +      Q  E  L +
Sbjct: 66  KRHYSHVDCPGHADYI-------KNMITGAAQM-DG--AILVVSAADGPMPQTREHILLA 115

Query: 129 LQTLFGKKIFDYMIVVFTGGDELEDNDETLE 159
            Q   G       IVVF    ++ D+ E L+
Sbjct: 116 RQ--VGVP----YIVVFMNKVDMVDDPELLD 140

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 23 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 82
          +V+VG+   GKS   N +L     ++  +    T+   +   ++  G +  ++DT G+  
Sbjct: 3  MVIVGKPNVGKSTLLNRLLNED--RAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 83 FSAG 86
           +  
Sbjct: 61 ETND 64

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPG 79
           V +VGR   GKS   N+IL +   ++  S    T+   +   V  DG+    +DT G
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKE--RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.89
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.87
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.79
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.78
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.78
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.77
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.77
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.77
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.76
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.76
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.76
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.75
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.73
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.72
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.71
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.7
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.7
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.69
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.69
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.69
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.68
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.68
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.68
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.68
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.68
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.66
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.65
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.64
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.63
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.63
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.62
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.62
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.61
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.61
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.61
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.6
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.6
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.6
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.59
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.59
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.58
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.58
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.58
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.58
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.56
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.56
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.56
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.55
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.54
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.54
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.53
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.53
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.53
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.53
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.52
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.52
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.51
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.5
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.49
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.47
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.45
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.44
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.43
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.43
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.39
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.39
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.38
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.37
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.36
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.36
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.35
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.32
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.31
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.3
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.29
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.28
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.27
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.26
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.26
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.26
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.25
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.23
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.23
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.2
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.2
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.17
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.14
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.12
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.07
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.05
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.98
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.97
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.95
d1okkd2	207	GTPase domain of the signal recognition particle r	98.93
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.87
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.87
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.85
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.76
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.67
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.41
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.37
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	98.24
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.99
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.94
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.94
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.73
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.72
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.71
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.7
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.7
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.64
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.61
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.61
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.61
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.6
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.6
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.59
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.58
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.56
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.54
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.54
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.54
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.53
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.53
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.53
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.52
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.52
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.52
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.5
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.5
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.49
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.49
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.45
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.44
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.44
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.43
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.42
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.4
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.39
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.39
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.39
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.39
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.38
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.36
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.33
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.33
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.32
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.32
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.31
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.31
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.3
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.3
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.27
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.25
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.25
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.18
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.17
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.16
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.16
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.14
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.11
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.07
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.04
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.03
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.02
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.99
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.95
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.95
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.94
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.94
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.93
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.92
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.92
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.92
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.88
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.86
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.82
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.8
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.74
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.68
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.68
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.66
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.65
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.61
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.6
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.59
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.52
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.51
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.41
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.41
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.38
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.35
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.22
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.2
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.18
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.14
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.13
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.11
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.04
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.03
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.0
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.97
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.79
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.61
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.53
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.51
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.5
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.44
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.27
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.26
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.26
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.21
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.18
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.12
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.03
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.0
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.99
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.98
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.94
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.9
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.83
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.82
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.72
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.39
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.23
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.06
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.0
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.9
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.89
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	93.53
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	93.38
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.24
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.25
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.14
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	91.07
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	91.02
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	90.95
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	90.71
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	90.39
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	90.13
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	89.51
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	88.61
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	88.5
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	88.41
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	88.08
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	87.93
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	87.9
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	87.41
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	87.27
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.88
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.58
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	86.21
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.58
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	85.23
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	85.09
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	84.21
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	83.8
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	83.25
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	83.24
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	82.69
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	82.5
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	81.67
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	80.06

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.89  E-value=7.4e-23  Score=148.13  Aligned_cols=142  Identities=23%  Similarity=0.337  Sum_probs=111.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ...+|+++|.+|+|||||+|+|+|...+... ...+.|..+....... .+..+.++||||+.+.....+.....+..+.
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs-~~~~~T~~~~~~~~~~-~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCceeec-CCCCcceeEEEEEEEe-ccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            3489999999999999999999998876554 3345666666666656 7889999999999986555554444444433


Q ss_pred             HhccCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhcc
Q 030624           99 GMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  164 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~  164 (174)
                        ....+|+++||++.+. +++..+...++.+.+.++...++++++|+||+|...++...+++|+.+
T Consensus       109 --~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~e~~~~~  173 (257)
T d1h65a_         109 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK  173 (257)
T ss_dssp             --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH
T ss_pred             --hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcHHHHHHh
Confidence              3457899999998753 689999999999999999988899999999999988666667776644

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=6.8e-21  Score=130.48  Aligned_cols=126  Identities=22%  Similarity=0.207  Sum_probs=91.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      ..|+++|.+|+|||||+|+|++....... ...+.|.......... .+..+.++||||+.....   .....+...+..
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~-~~~~tt~~~~~~~~~~-~~~~~~~~DtpG~~~~~~---~~~~~~~~~~~~   80 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPIS-PRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMD---ALGEFMDQEVYE   80 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCS---HHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeec-ccCCcccccccceeee-eeeeeeeccccccccccc---ccchhccccccc
Confidence            57999999999999999999997643222 2233444444433444 678899999999987432   233334444455


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ....+|++++|+|++++++..+..+.+.++... ..  .|+++|+||+|+....
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~-~~--~piilv~NK~Dl~~~~  131 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPEDELVARALKPLV-GK--VPILLVGNKLDAAKYP  131 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGT-TT--SCEEEEEECGGGCSSH
T ss_pred             ccccccceeeeechhhhhcccccchhhheeccc-cc--hhhhhhhcccccccCH
Confidence            677899999999998888888877777776543 22  5899999999997654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=3.8e-19  Score=124.19  Aligned_cols=118  Identities=15%  Similarity=0.184  Sum_probs=87.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccc--cc-------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFK--SR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   84 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~--~~-------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~   84 (174)
                      ...|+++|+.++|||||+++|+......  .+             ....+.|.......+.+ ++..+.++||||+.+  
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~-~~~~i~iiDtPGh~d--   79 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHAD--   79 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGG--
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe-CCeEEEEEeCCCchh--
Confidence            4789999999999999999997321000  00             00115666667777777 788999999999887  


Q ss_pred             CChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           85 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                               +..-....+..+|++|+|+|+.+++..++++.+..+.... -   +++++++||+|+.+.
T Consensus        80 ---------f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~g-i---~~iiv~iNK~D~~~~  135 (204)
T d2c78a3          80 ---------YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG-V---PYIVVFMNKVDMVDD  135 (204)
T ss_dssp             ---------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTT-C---CCEEEEEECGGGCCC
T ss_pred             ---------hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcC-C---CeEEEEEEecccCCC
Confidence                     3333334556779999999999899999999888777752 1   357888999999865

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=6.1e-19  Score=120.78  Aligned_cols=126  Identities=16%  Similarity=0.138  Sum_probs=80.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      .|+|+|.+|||||||+|+|++......  .....|............+..+.++||||+.+...........+.+    .
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~----~   76 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIA--PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR----H   76 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEEC--CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHH----H
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCcee--ccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHH----H
Confidence            489999999999999999998765322  2233444444433444356789999999987643322222223333    3


Q ss_pred             cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          102 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+++++++++...........+...+.........+|+++|+||+|+..+
T Consensus        77 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~  128 (180)
T d1udxa2          77 IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE  128 (180)
T ss_dssp             HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred             HHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhH
Confidence            4566999999998633323333444444333222334799999999999875

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=1.9e-18  Score=118.36  Aligned_cols=121  Identities=21%  Similarity=0.214  Sum_probs=80.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChH----HHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE----FVGKEIVKC   97 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~----~~~~~~~~~   97 (174)
                      .|+++|++|||||||+|+|++.... .+ ..++.|...  ....+   ..+.++||||+........    .....+...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~-~~-~~~g~T~~~--~~~~~---~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~   74 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR-RG-KRPGVTRKI--IEIEW---KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   74 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS-SS-SSTTCTTSC--EEEEE---TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce-ee-CCCCEeecc--ccccc---ccceecccCCceeccccccccccccchhhhhh
Confidence            5899999999999999999997642 22 223344432  23333   3467899999876544333    223344455


Q ss_pred             HHhccCCceEEEEEEeCCC-----------CCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRS-----------RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~-----------~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      .......+|++++++|+..           .....+.+.++.+.+..     .|+++|+||+|+....
T Consensus        75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~-----~p~iiv~NK~D~~~~~  137 (184)
T d2cxxa1          75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD-----IPTIVAVNKLDKIKNV  137 (184)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTT-----CCEEEEEECGGGCSCH
T ss_pred             hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcC-----CCEEEEEeeeehhhhH
Confidence            5556677899999999862           33444555555554432     6899999999998654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2.8e-18  Score=115.18  Aligned_cols=126  Identities=22%  Similarity=0.210  Sum_probs=85.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+|+++|++|||||||+|+|++....... ...+.+.........+ .+..+.++|+||+.+...   .......+....
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~---~~~~~~~~~~~~   76 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASD---EVERIGIERAWQ   76 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSS---HHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEee-cccccccceEeeeeec-cCceeeeccccccccccc---cchhHHHHHHHH
Confidence            68999999999999999999987643222 2233344333444444 678899999999987432   222333333444


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +...+|++++++|..+............+.......  .|+++|+||+|+...
T Consensus        77 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~iilv~NK~Dl~~~  127 (161)
T d2gj8a1          77 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITGE  127 (161)
T ss_dssp             HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHCC
T ss_pred             HHHhccccceeeccccccchhhhhhhhhhhhhcccc--cceeeccchhhhhhh
Confidence            566789999999998666555555444344433333  699999999998654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=2.4e-18  Score=116.83  Aligned_cols=123  Identities=22%  Similarity=0.290  Sum_probs=80.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      +|+++|++|||||||+|+|++......+ ...+.|.......... ....+.++|+||+.....  ..........+...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~--~~~~~~~~~~~~~~   77 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQ--DIISQKMKEVTLNM   77 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSGG--GCCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceec-ccCceeeccccccccc-cccccccccccceeeeec--cccccccccccccc
Confidence            6899999999999999999987643222 2233343333333433 667889999999876332  21222233333445


Q ss_pred             cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          102 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+|+++++.+.++.....+..+++.++...     .|+++|+||+|+.+.
T Consensus        78 ~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~-----~pviiv~NK~Dl~~~  124 (171)
T d1mkya1          78 IREADLVLFVVDGKRGITKEDESLADFLRKST-----VDTILVANKAENLRE  124 (171)
T ss_dssp             HTTCSEEEEEEETTTCCCHHHHHHHHHHHHHT-----CCEEEEEESCCSHHH
T ss_pred             cccCcEEEEeeccccccccccccccccccccc-----ccccccchhhhhhhh
Confidence            56789999999998788888888877776542     689999999999754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.77  E-value=5.6e-18  Score=117.29  Aligned_cols=129  Identities=21%  Similarity=0.265  Sum_probs=84.5

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHH--HHH
Q 030624           16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFV--GKE   93 (174)
Q Consensus        16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~--~~~   93 (174)
                      |...-++|+++|++|||||||+|+|+|.............|....  ...  ....+.++|+++...........  ...
T Consensus        19 p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~--~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~   94 (195)
T d1svia_          19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN--FYI--INDELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEE--EEE--ETTTEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecc--ccc--ccccceEEEEEeeccccccccccchhhh
Confidence            334447899999999999999999998653212111222222222  221  24556789998877644443322  233


Q ss_pred             HHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           94 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        94 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +..........+|++++++|+.++++..+.++++.++...     .|+++|+||+|+..+
T Consensus        95 ~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~-----~piivv~NK~D~~~~  149 (195)
T d1svia_          95 MIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYG-----IPVIVIATKADKIPK  149 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTT-----CCEEEEEECGGGSCG
T ss_pred             HHhhhhccccchhhhhhhhhcccccccccccccccccccc-----CcceechhhccccCH
Confidence            3444445667789999999998789988888888887653     689999999999765

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.76  E-value=7.1e-19  Score=124.81  Aligned_cols=115  Identities=17%  Similarity=0.204  Sum_probs=80.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEE------------------EEEeCCcEEEEEeCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR------------------TVLKDGQVVNVIDTPGLFD   82 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~------------------~~~~~~~~~~~iDtpG~~~   82 (174)
                      ++|+++|++++|||||+|+|++......  .....+.......                  +.+ .+..+.++||||+.+
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iDtPGh~~   82 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE-TLPGLFFIDTPGHEA   82 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG-TCCEEEEECCCTTSC
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchhe--ecCceeeeccccccccccccccccccccceeecc-cccccccccccceec
Confidence            5699999999999999999987542211  1111111111111                  112 456789999999887


Q ss_pred             CCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      +..           ....++..+|++++|+|+.+++...+...+..+....     .|+++++||+|+....
T Consensus        83 f~~-----------~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~-----~p~iivlNK~D~~~~~  138 (227)
T d1g7sa4          83 FTT-----------LRKRGGALADLAILIVDINEGFKPQTQEALNILRMYR-----TPFVVAANKIDRIHGW  138 (227)
T ss_dssp             CTT-----------SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTT-----CCEEEEEECGGGSTTC
T ss_pred             ccc-----------cchhcccccceEEEEEecccCcccchhHHHHHhhcCC-----CeEEEEEECccCCCch
Confidence            432           2223566789999999998899999999888877653     6899999999997653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=1.5e-18  Score=119.22  Aligned_cols=130  Identities=20%  Similarity=0.239  Sum_probs=82.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHH-----HHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF-----VGKEI   94 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~-----~~~~~   94 (174)
                      ..+|+++|++|+|||||+|+|++......+. ....+.........+ ++..+.++|+||+.........     .....
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKERALVSP-IPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV   85 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECC-CC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcceeec-ccccccccceeeecc-CCceeeeeccCCccccccccccccccchhHHH
Confidence            3899999999999999999999876432322 233344444444444 7788999999998753221111     01122


Q ss_pred             HHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHH
Q 030624           95 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLED  160 (174)
Q Consensus        95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~  160 (174)
                      ...    ...+|++++++|+..+.......++..+....     .|+++|+||+|+.......+++
T Consensus        86 ~~~----~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~-----~~~i~v~nK~D~~~~~~~~~~~  142 (186)
T d1mkya2          86 VDS----IEKADVVVIVLDATQGITRQDQRMAGLMERRG-----RASVVVFNKWDLVVHREKRYDE  142 (186)
T ss_dssp             HHH----HHHCSEEEEEEETTTCCCHHHHHHHHHHHHTT-----CEEEEEEECGGGSTTGGGCHHH
T ss_pred             HHH----HhcCCEEEEeecccccchhhHHHHHHHHHHcC-----Cceeeeccchhhhcchhhhhhh
Confidence            222    33469999999998788888888777666542     6899999999998665333333

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.76  E-value=3.1e-18  Score=118.71  Aligned_cols=118  Identities=16%  Similarity=0.174  Sum_probs=88.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccc--------------ccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      ...|+++|+.++|||||+++|++...-              .......+.|.......+.+ .++.+.++||||..+   
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~-~~~~~~~iDtPGh~~---   78 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD---   78 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH---
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEe-ceeeEEeecCcchHH---
Confidence            478999999999999999999752100              01112235566666666666 788999999999775   


Q ss_pred             ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                              +.+.....+..+|++++|+|+.+++..++++.+..+.... .   +++++++||+|+...
T Consensus        79 --------f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~-~---~~iIv~iNK~D~~~~  134 (196)
T d1d2ea3          79 --------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIG-V---EHVVVYVNKADAVQD  134 (196)
T ss_dssp             --------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTT-C---CCEEEEEECGGGCSC
T ss_pred             --------HHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhc-C---CcEEEEEeccccccc
Confidence                    4444555678889999999999899999998887776652 2   478999999999764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.75  E-value=1.1e-17  Score=112.80  Aligned_cols=115  Identities=13%  Similarity=0.078  Sum_probs=80.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|++|+|||||+++|.+....     ...+|.......+.. ++..+.++||||...           +.....
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-----~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~~~   64 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSYWR   64 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-----SCCCCSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-----cccceEeeeeeeccc-cccceeeeecCcchh-----------hhhHHH
Confidence            478999999999999999999987542     233444445555555 778999999999654           455566


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHH-HHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAAL-HSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l-~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+..++++++++|.++.....+ ..++ ..+.....  ...|+++|.||+|+...
T Consensus        65 ~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~  118 (165)
T d1ksha_          65 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL--AGATLLIFANKQDLPGA  118 (165)
T ss_dssp             GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGG--TTCEEEEEEECTTSTTC
T ss_pred             hhhhhhhcceeeeecccchhHHHHHHhhhhhhhhccc--CCCceEEEEeccccccc
Confidence            67889999999999985544433 2222 22222111  22699999999998754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.73  E-value=1.1e-17  Score=114.36  Aligned_cols=118  Identities=18%  Similarity=0.265  Sum_probs=79.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccc-----cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSR-----ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE   93 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~   93 (174)
                      +..+|+++|+++||||||+|+|++.......     ....+.+.........+ .+..+.++|+||..+           
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~d~~g~~~-----------   71 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHAD-----------   71 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHH-----------
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccccc-CCccccccccccccc-----------
Confidence            3468999999999999999999975422111     01112233333333344 667889999999654           


Q ss_pred             HHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           94 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        94 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +.+........+|++++++|+.++....+++.+..+....     .|+++|+||+|+...
T Consensus        72 ~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~-----~p~iiv~NKiD~~~~  126 (179)
T d1wb1a4          72 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFN-----IPIIVVITKSDNAGT  126 (179)
T ss_dssp             HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTT-----CCBCEEEECTTSSCH
T ss_pred             cccchhhhhhhccccccccccccccchhhhhhhhhhhhcC-----CcceeccccccccCH
Confidence            4444445667789999999998888888877776655532     689999999999875

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.72  E-value=6.2e-17  Score=110.06  Aligned_cols=123  Identities=17%  Similarity=0.117  Sum_probs=82.6

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHH
Q 030624           14 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKE   93 (174)
Q Consensus        14 ~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~   93 (174)
                      ..++.+..+|+++|++|+|||||+|++.+.......     .+.........+ ++..+.++|+||...           
T Consensus        10 ~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-----~~~~~~~~~i~~-~~~~~~i~d~~g~~~-----------   72 (176)
T d1fzqa_          10 KSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQS-QGFKLNVWDIGGQRK-----------   72 (176)
T ss_dssp             SSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-----EETTEEEEEEEE-TTEEEEEEECSSCGG-----------
T ss_pred             hCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-----eeeeeeEEEecc-CCeeEeEeecccccc-----------
Confidence            344556689999999999999999999887642211     112223334444 677899999999876           


Q ss_pred             HHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           94 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        94 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      +...+...+..+|++++|+|.++...... ..++..+..... ....|++++.||+|+....
T Consensus        73 ~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~-~~~~pillv~nK~Dl~~~~  133 (176)
T d1fzqa_          73 IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTAA  133 (176)
T ss_dssp             GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTCC
T ss_pred             chhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhc-cCCCeEEEEEEeccccccc
Confidence            44445556778899999999985544443 233333332211 1236899999999998653

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=3.5e-17  Score=110.83  Aligned_cols=117  Identities=11%  Similarity=0.072  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|.+|+|||||++++++........  ...+.......... ..  ..+.+|||||..+           +....
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~wDt~G~e~-----------~~~~~   71 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADDSFTPAFV--STVGIDFKVKTIYR-NDKRIKLQIWDTAGQER-----------YRTIT   71 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCC--CCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCcccc--cccccceeeEEEEe-ecceEEEEEEECCCchh-----------hHHHH
Confidence            689999999999999999998765332211  12222222223322 22  4678999999765           34445


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..++..+|++++|+|.++.-+... ..+...+......  ..+++++.||+|....
T Consensus        72 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~  125 (169)
T d3raba_          72 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDMEDE  125 (169)
T ss_dssp             HTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCS--CCEEEEEEECTTCGGG
T ss_pred             HHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCC--cceEEEEEeecccccc
Confidence            557889999999999984322222 3344444333222  2588899999998654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.70  E-value=9.2e-17  Score=108.16  Aligned_cols=117  Identities=17%  Similarity=0.073  Sum_probs=78.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|++|+|||||++.+.+......    ..+|.......... .+..+.++|+||...           +...+.
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~----~~~T~~~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~   65 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNED----MIPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSMWE   65 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCc----ccccceeeeeeeee-eeEEEEEeecccccc-----------cccccc
Confidence            47999999999999999999987653211    22344444445555 678899999999654           333444


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+|++++|+|.++.-+... ..++..+.+... ....|+++|.||.|+...
T Consensus        66 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~pi~lv~nK~Dl~~~  119 (164)
T d1zd9a1          66 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPGA  119 (164)
T ss_dssp             HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTC
T ss_pred             ccccccchhhcccccccccccchhhhhhhhhhhhhc-ccCCcEEEEEeccccchh
Confidence            45678899999999985433332 333333322211 123699999999998754

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=2.7e-16  Score=113.72  Aligned_cols=122  Identities=20%  Similarity=0.261  Sum_probs=90.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC---Cccccc-------------ccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILG---RRAFKS-------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~---~~~~~~-------------~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   83 (174)
                      -++|+++|+.|+|||||+.+|+-   .....+             .....+.|.......+.| ++..+.++||||+.++
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~-~~~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDAPGHVDF   84 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE-TTEEEEEECCCSSSSC
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc-CCeEEEEecCCchhhh
Confidence            36799999999999999999852   111100             012225566666777888 8999999999999996


Q ss_pred             CCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhH
Q 030624           84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL  158 (174)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~  158 (174)
                      .       .+....+..+    |..++|+|+.++....++..++...+..     .|.++++||+|....+-..+
T Consensus        85 ~-------~e~~~~l~~~----D~avlVvda~~Gv~~~T~~~w~~a~~~~-----lP~i~fINKmDr~~ad~~~~  143 (276)
T d2bv3a2          85 T-------IEVERSMRVL----DGAIVVFDSSQGVEPQSETVWRQAEKYK-----VPRIAFANKMDKTGADLWLV  143 (276)
T ss_dssp             S-------TTHHHHHHHC----CEEEEEEETTTSSCHHHHHHHHHHHTTT-----CCEEEEEECTTSTTCCHHHH
T ss_pred             H-------HHHHHHHHhh----hheEEeccccCCcchhHHHHHHHHHHcC-----CCEEEEEecccccccccchh
Confidence            4       2234444444    9999999999899999998887776653     69999999999987754443

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=6.9e-17  Score=109.51  Aligned_cols=117  Identities=15%  Similarity=0.137  Sum_probs=78.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|.+|+|||||++.+++......  .....+.......+.. .+  ..+.+|||||...           +....
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~--~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~~~   71 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRSIT   71 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCc--ccccccceEEEEEEEE-CCEEEEEEEEECCCchh-----------hHHHH
Confidence            6899999999999999999997654322  1222333333333333 33  3477899999765           45555


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+.++|++++|+|.++..+... ..+...+.+.....  .|+++|.||+|....
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~~ilvgnK~D~~~~  125 (171)
T d2ew1a1          72 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAER  125 (171)
T ss_dssp             GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG
T ss_pred             HHHHhccceEEEeeecccchhhhhhhhhhhhhccccccc--ccEEEEEeecccccc
Confidence            667889999999999885433332 44555555543222  588999999998654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=9.6e-18  Score=112.43  Aligned_cols=121  Identities=21%  Similarity=0.272  Sum_probs=79.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCC--hHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~--~~~~~~~~~~~~   98 (174)
                      .+|+++|.+|+|||||+|+|+|....... ...+.+.......... .+..+.++||||+......  .........+. 
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~-   77 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVT-DIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQE-   77 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCC-CSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeee-ccccccccceeEEEEe-CCeeEEeccccccccCCccHHHHHHHHHHHHH-
Confidence            47999999999999999999987643222 2223333333334444 6778999999997653221  11111223333 


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                         +..+|++++|+|++++....+......+.       ..++++++||.|.....
T Consensus        78 ---~~~ad~ii~v~d~~~~~~~~~~~~~~~~~-------~~~~i~~~~k~d~~~~~  123 (160)
T d1xzpa2          78 ---IEKADIVLFVLDASSPLDEEDRKILERIK-------NKRYLVVINKVDVVEKI  123 (160)
T ss_dssp             ---HHHCSEEEEEEETTSCCCHHHHHHHHHHT-------TSSEEEEEEECSSCCCC
T ss_pred             ---HHhCCEEEEEEeCCCCcchhhhhhhhhcc-------cccceeeeeeccccchh
Confidence               34459999999998777666555443221       15899999999998763

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.69  E-value=2.1e-16  Score=113.93  Aligned_cols=115  Identities=28%  Similarity=0.296  Sum_probs=86.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC---Ccccc----ccc---------CCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG---RRAFK----SRA---------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   84 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~---~~~~~----~~~---------~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~   84 (174)
                      +.|+++|+.++|||||+.+|+.   .....    .+.         ...+.|.........| ++..+.++||||+.++ 
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~-~~~~~n~iDtPGh~dF-   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGDF-   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGGG-
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccc-cccceeEEccCchhhh-
Confidence            6799999999999999999852   21110    010         1124566666777778 8899999999999983 


Q ss_pred             CChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           85 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                            ..+....++.+    |.+++|+|+.++....+...++.+.+..     .|.++++||+|...
T Consensus        81 ------~~e~~~al~~~----D~avlvvda~~Gv~~~t~~~~~~~~~~~-----~p~~i~iNk~D~~~  133 (267)
T d2dy1a2          81 ------VGEIRGALEAA----DAALVAVSAEAGVQVGTERAWTVAERLG-----LPRMVVVTKLDKGG  133 (267)
T ss_dssp             ------HHHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHTT-----CCEEEEEECGGGCC
T ss_pred             ------hhhhhhhhccc----CceEEEeeccCCccchhHHHHHhhhhcc-----cccccccccccccc
Confidence                  24444444444    9999999999899999999988777753     68999999999854

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1e-16  Score=122.23  Aligned_cols=118  Identities=19%  Similarity=0.163  Sum_probs=78.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC--cceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG--VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+|+++|.+|+|||||+|+|+|......+....+  .|+. ....+.+.....+.+|||||+.......+....+    
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~-~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~----  130 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM-ERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEK----  130 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C-CCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHH----
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCce-eeeeeeccCCCeEEEEeCCCcccccccHHHHHHH----
Confidence            37899999999999999999999654333322111  1221 2223334355678999999998765444433221    


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL  151 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~  151 (174)
                        .....+|.++++.+  .+++..+.+.++.+++..     +|+++|+||+|..
T Consensus       131 --~~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~~-----k~~~~V~nK~D~~  175 (400)
T d1tq4a_         131 --MKFYEYDFFIIISA--TRFKKNDIDIAKAISMMK-----KEFYFVRTKVDSD  175 (400)
T ss_dssp             --TTGGGCSEEEEEES--SCCCHHHHHHHHHHHHTT-----CEEEEEECCHHHH
T ss_pred             --hhhhcceEEEEecC--CCCCHHHHHHHHHHHHcC-----CCEEEEEeCcccc
Confidence              12445687777654  367888888888777753     6999999999964

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.68  E-value=9.3e-17  Score=109.88  Aligned_cols=120  Identities=16%  Similarity=0.105  Sum_probs=78.0

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      ...+..+|+++|.+|||||||++.+.+.......     +|.......... ++..+.++|+||.....           
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~~~i~D~~g~~~~~-----------   75 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTK-----PTIGFNVETLSY-KNLKLNVWDLGGQTSIR-----------   75 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-----SSTTCCEEEEEE-TTEEEEEEEEC----CC-----------
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCccc-----cccceEEEEEee-CCEEEEEEecccccccc-----------
Confidence            3445599999999999999999999877643221     222233344444 67889999999987632           


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ......+..+|++++|+|.++..+..+ ..++..+..... ....|++++.||+|+...
T Consensus        76 ~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~-~~~~piliv~NK~Dl~~~  133 (182)
T d1moza_          76 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQPGA  133 (182)
T ss_dssp             TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTSTTC
T ss_pred             hhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhc-cCCcceEEEEEeeccccc
Confidence            333456788999999999986655544 333322222111 122699999999999754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.68  E-value=3.4e-16  Score=106.20  Aligned_cols=117  Identities=15%  Similarity=0.127  Sum_probs=79.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +..+|+++|++|||||||++++.+.......     .|.......... ....+.++|+||...           ....+
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-----~t~~~~~~~~~~-~~~~~~i~D~~g~~~-----------~~~~~   73 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTI-----PTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLW   73 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-----EETTEEEEEEEE-TTEEEEEEEESCCGG-----------GHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-----ceeeeeEEEeec-cceeeEEecCCCcch-----------hhhHH
Confidence            3489999999999999999999876643222     222233333334 677899999999886           45566


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..++++++|+|.++.-.... ..++..+.+. ......|++++.||+|+...
T Consensus        74 ~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~-~~~~~~piiiv~NK~Dl~~~  128 (173)
T d1e0sa_          74 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDA  128 (173)
T ss_dssp             GGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTS-GGGTTCEEEEEEECTTSTTC
T ss_pred             HhhhcccceEEEEEecccchhHHHHHHHHHHHhhh-cccccceeeeeeeccccccc
Confidence            678889999999999984333332 2232222211 11223699999999999764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.68  E-value=4.4e-17  Score=111.78  Aligned_cols=135  Identities=18%  Similarity=0.164  Sum_probs=80.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      .|+|+|++|||||||+|+|++......  ...+.|.........+.+...+.++||||+.+...........+.+.+.. 
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~--~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~-   79 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER-   79 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH-
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCcee--cCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHH-
Confidence            589999999999999999998764222  33445555555555554567899999999854333333333444444433 


Q ss_pred             cCCceEEEEEEeCCC--CCCHHHHHH-HHHHHHHHhhh-hcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624          102 KDGIHAVLVVFSVRS--RFSQEEEAA-LHSLQTLFGKK-IFDYMIVVFTGGDELEDNDETLEDYLG  163 (174)
Q Consensus       102 ~~~~~~il~v~~~~~--~~~~~~~~~-l~~l~~~~~~~-~~~~~~iv~tk~D~~~~~~~~~~~~~~  163 (174)
                         ++.++++++...  .....+... ........... ..+|+++|+||+|+.... ..++.+.+
T Consensus        80 ---~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~-~~~~~~~~  141 (185)
T d1lnza2          80 ---TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA-ENLEAFKE  141 (185)
T ss_dssp             ---CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH-HHHHHHHH
T ss_pred             ---hhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH-HHHHHHHH
Confidence               377777776542  233333222 22222221111 236899999999997642 33444433

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=9e-17  Score=111.14  Aligned_cols=120  Identities=18%  Similarity=0.196  Sum_probs=76.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+|+++|+.|+|||||++.+++...........+.+..  ...+... ....+.+|||||..+...           .+.
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~--~~~i~~~~~~~~l~i~Dt~G~e~~~~-----------~~~   73 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFK--IKTVELDGKTVKLQIWDTAGQERFRT-----------ITS   73 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEE--EEEEEETTEEEEEEEECCTTTTTTTC-----------CCG
T ss_pred             EEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEE--EEEEEEeeEEEEEEEEECCCchhhHH-----------HHH
Confidence            68999999999999999999876533222222222222  2222221 234678899999887432           233


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCCh
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND  155 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~  155 (174)
                      .++..+|++++|+|.+++.+... ..+...+.+.....  .|+++|.||+|+.+...
T Consensus        74 ~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~~~~~  128 (194)
T d2bcgy1          74 SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDKRV  128 (194)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCC
T ss_pred             HHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCC--ceEEEEEeccccccccc
Confidence            46788999999999985433333 33444444433222  58999999999976543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.9e-17  Score=108.70  Aligned_cols=116  Identities=23%  Similarity=0.117  Sum_probs=68.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|.+|+|||||++.+.+.... .......   ......+.. ++  ..+.++||||....           ....
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~-~~~~~~~---~~~~~~i~~-~~~~~~l~i~D~~g~e~~-----------~~~~   65 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAG---HTYDRSIVV-DGEEASLMVYDIWEQDGG-----------RWLP   65 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------C---EEEEEEEEE-TTEEEEEEEEECC------------------CH
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccC-CcCCeee---eeecceeec-cccccceeeeeccccccc-----------ceec
Confidence            57999999999999999999986532 1111111   111122223 33  46789999998762           2233


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..++..+|++++|+|.+++-+... ..++..+...... ...|+++|.||+|+...
T Consensus        66 ~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~  120 (168)
T d2gjsa1          66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT-DDVPIILVGNKSDLVRS  120 (168)
T ss_dssp             HHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCGGG
T ss_pred             ccchhhhhhhceeccccccccccccccccchhhccccc-ccceEEEeecccchhhh
Confidence            446678899999999985444443 3555555544322 22589999999998754

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.68  E-value=5.5e-16  Score=109.16  Aligned_cols=124  Identities=14%  Similarity=0.146  Sum_probs=85.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccc--------------cc-----------------cCCCCcceeeEEEEEEEe
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFK--------------SR-----------------ASSSGVTSTCEMQRTVLK   67 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~--------------~~-----------------~~~~~~t~~~~~~~~~~~   67 (174)
                      ...+++++|+.++|||||+++|+......              .+                 ....+.+.........+ 
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-   86 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST-   86 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec-
Confidence            45789999999999999999996321000              00                 01113333333444444 


Q ss_pred             CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624           68 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus        68 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                      .++.+.++||||..+           +...+......+|++++|+|+.+++..++.+.+..+... +-   +++++++||
T Consensus        87 ~~~~~~iiD~PGH~d-----------fv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~-gv---~~iiv~vNK  151 (222)
T d1zunb3          87 AKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLL-GI---KHIVVAINK  151 (222)
T ss_dssp             SSEEEEEEECCCSGG-----------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC---CEEEEEEEC
T ss_pred             cceEEEEEeccchhh-----------hhhhhccccccCceEEEEeccccCcccchHHHHHHHHHc-CC---CEEEEEEEc
Confidence            678899999999997           333333455677999999999989999998887766554 32   468999999


Q ss_pred             cCCCCCChhhH
Q 030624          148 GDELEDNDETL  158 (174)
Q Consensus       148 ~D~~~~~~~~~  158 (174)
                      +|+...+...+
T Consensus       152 ~D~~~~~~~~~  162 (222)
T d1zunb3         152 MDLNGFDERVF  162 (222)
T ss_dssp             TTTTTSCHHHH
T ss_pred             cccccccceeh
Confidence            99987554333

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.5e-16  Score=108.12  Aligned_cols=118  Identities=15%  Similarity=0.128  Sum_probs=75.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+|+++|.+|+|||||++.+.+...........  ............ ....+.+|||||...           +.....
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~~   72 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTI--GVEFGSKIINVGGKYVKLQIWDTAGQER-----------FRSVTR   72 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCS--EEEEEEEEEEETTEEEEEEEEEECCSGG-----------GHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccc--ccceeeEEEEecCcceeEEEEECCCchh-----------hhhhHH
Confidence            689999999999999999998765322211111  111122222220 124678999999775           444556


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+...+|++++|+|.++.-+... ..++..+......  ..|+++|.||+|+...
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piivv~nK~D~~~~  125 (174)
T d2bmea1          73 SYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDAD  125 (174)
T ss_dssp             TTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGG
T ss_pred             HHhhhCCEEEEEEecccchhHHHHhhhhcccccccCC--ceEEEEEEecccccch
Confidence            67889999999999984322222 3444444443332  2699999999997543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.2e-16  Score=105.15  Aligned_cols=118  Identities=14%  Similarity=0.132  Sum_probs=73.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+|+++|.+|+|||||++.+++............  ........... ....+.++|++|...           ......
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~d~~g~~~-----------~~~~~~   70 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG--ASFLTKKLNIGGKRVNLAIWDTAGQER-----------FHALGP   70 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCS--CEEEEEEEESSSCEEEEEEEECCCC------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccc--cchheeeeccCCccceeeeeccCCcce-----------ecccch
Confidence            6899999999999999999987654322211111  11222222221 124678999999876           334445


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..+.++|++++|+|.+++-+... ..+++.+.......  .+++++.||+|+...
T Consensus        71 ~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~--~~~ilvgnK~Dl~~~  123 (167)
T d1z08a1          71 IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKE  123 (167)
T ss_dssp             CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGG
T ss_pred             hhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccc--cceeeeccccccccc
Confidence            57889999999999985433333 45555555543333  688899999998654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=6.4e-17  Score=108.97  Aligned_cols=116  Identities=23%  Similarity=0.170  Sum_probs=73.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|.+|+|||||++.+++.........+.+....  ...... .  ...+.++||+|..+......          
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~--~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~----------   69 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFL--ERQIQV-NDEDVRLMLWDTAGQEEFDAITK----------   69 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEE--EEEEEE-TTEEEEEEEECCTTGGGTTCCCH----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccc--eeeeee-cCceeeeeeeccCCccchhhhhh----------
Confidence            68999999999999999999865432221111111221  112222 2  24679999999876433222          


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                       ..+..+|++++|+|.+++-+... ..+++.+.+..+   ..|+++|.||+|+...
T Consensus        70 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~iilVgnK~Dl~~~  121 (164)
T d1z2aa1          70 -AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLDD  121 (164)
T ss_dssp             -HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC---SCCEEEEEECGGGGGG
T ss_pred             -hhhccCceEEEEEeccchhhhhhcccccccccccCC---CceEEEeeccCCcccc
Confidence             23567899999999985433332 445555555432   2589999999998654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2e-16  Score=106.37  Aligned_cols=119  Identities=15%  Similarity=0.123  Sum_probs=77.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+|+++|..|+|||||++++++.......  ....+........... ....+.++|++|....           .....
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~-----------~~~~~   67 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMYLEDRTIRLQLWDTAGQERF-----------RSLIP   67 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEECSSCEEEEEEEEECCSGGG-----------GGGHH
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCcc--ccceeeeccceeeccCCCceeeeecccCCcchh-----------ccchH
Confidence            37999999999999999999976643221  2222222222233221 1246789999998762           22333


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ..+..+|++++|+|.++..+... ..++..+.......  .|+++|.||.|+....
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~  121 (164)
T d1yzqa1          68 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKR  121 (164)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGC
T ss_pred             HHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCC--ceEEEEecccchhhhh
Confidence            45678899999999985443333 55555555554333  6899999999986543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2e-16  Score=106.63  Aligned_cols=117  Identities=15%  Similarity=0.204  Sum_probs=74.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|.+|+|||||++++++........  ...+.......... ++  ..+.++|+||.....           ...
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~-----------~~~   70 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCP--HTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFR-----------AVT   70 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCT--TSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTC-----------HHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccc--ccccccceeEEEEE-CCEEEEEEEeccCCchhHH-----------HHH
Confidence            689999999999999999998766432221  22222222223333 33  368899999977522           222


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ......+|++++|+|.++.-+... ..++..+.+.....  .|++++.||+|+...
T Consensus        71 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~  124 (166)
T d1z0fa1          71 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQ  124 (166)
T ss_dssp             HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG
T ss_pred             HHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhcccc--ceEEEEcccccchhh
Confidence            234456799999999985432222 45555555543333  689999999998543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.3e-16  Score=108.60  Aligned_cols=117  Identities=20%  Similarity=0.197  Sum_probs=76.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|.+|+|||||++++++........  ...+.......+.. ++  ..+.++|+||..++....           
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~e~~~~~~-----------   70 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESK--STIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRIT-----------   70 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccc--ccccceeeeEEEEE-CCEEEEEEecccCCcHHHHHHH-----------
Confidence            689999999999999999998765432322  22222233333333 33  367899999976533221           


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|.+++-+... ..++..+.+.....  .|+++|.||+|+...
T Consensus        71 ~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~--~piilvgnK~Dl~~~  124 (175)
T d2f9la1          71 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN--IVIMLVGNKSDLRHL  124 (175)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG
T ss_pred             HHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCC--CcEEEEEeeeccccc
Confidence            234567899999999984432222 45566666654333  589999999998754

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2.5e-16  Score=106.33  Aligned_cols=119  Identities=18%  Similarity=0.118  Sum_probs=73.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      +..+|+++|.+|+|||||++.+.+.........+.....  ....... ..  ..+.++|++|....           ..
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~--~~~~~~~-~~~~~~~~i~d~~g~~~~-----------~~   68 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASF--MTKTVQY-QNELHKFLIWDTAGLERF-----------RA   68 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEE--EEEEEEE-TTEEEEEEEEEECCSGGG-----------GG
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCccccccccccc--ccccccc-cccccceeeeecCCchhh-----------hH
Confidence            457899999999999999999987664322111111111  1111111 22  34679999998762           22


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+.++|++++|+|.+++-+... ..+...+......  ..|+++|.||+|+.+.
T Consensus        69 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~  124 (167)
T d1z0ja1          69 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCDLTDV  124 (167)
T ss_dssp             GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TSEEEEEEECTTCGGG
T ss_pred             HHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCC--cceEEEecccchhccc
Confidence            23345677899999999984332222 3334344443332  3699999999998653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=3.7e-16  Score=106.07  Aligned_cols=122  Identities=14%  Similarity=0.072  Sum_probs=70.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+|+++|++|+|||||++++++...........+.+...............+.++||||...           .......
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-----------~~~~~~~   71 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQSLGVA   71 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchh-----------hhhHHHH
Confidence            68999999999999999999876543222111111111111111110123578999999765           3334445


Q ss_pred             ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhh--hcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK--IFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~~~  153 (174)
                      ....++++++++|.++..+... ..|++.+.......  ...|++++.||+|+...
T Consensus        72 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~  127 (175)
T d1ky3a_          72 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES  127 (175)
T ss_dssp             CSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred             HhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhh
Confidence            7788999999999985443332 55666665544321  23589999999998653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=6e-16  Score=104.71  Aligned_cols=119  Identities=22%  Similarity=0.192  Sum_probs=74.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+|+++|.+|+|||||++++++......    ..+|...........++  ..+.++|++|....           ...
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~----~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-----------~~~   66 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRES----YIPTVEDTYRQVISCDKSICTLQITDTTGSHQF-----------PAM   66 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSS----CCCCSCEEEEEEEEETTEEEEEEEEECCSCSSC-----------HHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCc----cCcceeeccccceeeccccceeccccccccccc-----------ccc
Confidence            37899999999999999999998653222    11222222111111133  35678999998862           222


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+..+|++++|+|.+++-+... ..+...+.+..+.....|+++|.||+|+...
T Consensus        67 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  123 (171)
T d2erxa1          67 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS  123 (171)
T ss_dssp             HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred             ccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeeccccccc
Confidence            2233455699999999984433333 4555556555443333689999999998643

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.8e-16  Score=107.67  Aligned_cols=118  Identities=14%  Similarity=0.155  Sum_probs=57.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|.+|+|||||++++++........  ...+.......+.. ++  ..+.++||||...           +....
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~e~-----------~~~~~   72 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFI--STIGIDFKIRTIEL-DGKRIKLQIWDTAGQER-----------FRTIT   72 (173)
T ss_dssp             EEEEEECCCCC----------------CHH--HHHCEEEEEEEEEE-TTEEEEEEEEEC--------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccC--ccccceEEEEEEEE-CCEEEEEEEEECCCchh-----------hHHHH
Confidence            689999999999999999998765322211  11222233333433 33  3567899999775           33444


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ..++.++|++++|+|.+++.+... ..+.+.+.......  .|+++|.||.|.....
T Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~~k~D~~~~~  127 (173)
T d2fu5c1          73 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKR  127 (173)
T ss_dssp             CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCC
T ss_pred             HHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCC--ceEEEEEecccchhhc
Confidence            556788999999999985443333 34444454433223  6899999999998654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.1e-16  Score=105.03  Aligned_cols=119  Identities=18%  Similarity=0.176  Sum_probs=75.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ..+|+++|..|+|||||++.+++...........+  ........... ....+.++|++|....           ....
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~d~~g~~~~-----------~~~~   72 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG--AAFLTQTVCLDDTTVKFEIWDTAGQERY-----------HSLA   72 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS--EEEEEEEEEETTEEEEEEEEEECCSGGG-----------GGGH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc--cccccceeeccceEEEEEeccCCCchhh-----------hhhH
Confidence            36899999999999999999997653322222222  22222222221 1246789999998762           2233


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++++|.++.-+... ..+...+.+.....  .|+++|.||+|+...
T Consensus        73 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~  126 (170)
T d1r2qa_          73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANK  126 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG
T ss_pred             HHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCC--ceEEeeccccccccc
Confidence            335678899999999984433332 34444444443333  589999999998654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.4e-15  Score=101.34  Aligned_cols=118  Identities=20%  Similarity=0.189  Sum_probs=77.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      +..+|+++|..|+|||||++++++......    ..+|..... ..... ++  ..+.++||+|........        
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~----~~~t~~~~~~~~~~~-~~~~~~l~i~d~~g~~~~~~~~--------   69 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDS----YDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIFP--------   69 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSC----CCSSCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCCC--------
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcc----cCcceecccceEEec-CcEEEEeeeccccccccccccc--------
Confidence            457999999999999999999987653222    112222221 12223 33  356889999988744322        


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                         ...+..+|++++|+|.+++-+... ..++..+.+..+.. ..|+++|.||+|+...
T Consensus        70 ---~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilvgnK~Dl~~~  124 (167)
T d1xtqa1          70 ---QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV-QIPIMLVGNKKDLHME  124 (167)
T ss_dssp             ---GGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSS-CCCEEEEEECTTCGGG
T ss_pred             ---chhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhccccc-ccceeeeccccccccc
Confidence               245678999999999985433333 45555565554332 2589999999998654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.3e-16  Score=105.78  Aligned_cols=120  Identities=22%  Similarity=0.239  Sum_probs=75.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI   94 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~   94 (174)
                      +.+..+|+++|.+|+|||||++.+++.... ......  ........+.. ++  ..+.++|++|..+......      
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~-~~~~~t--~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~~------   72 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYDPT--IEDSYTKICSV-DGIPARLDILDTAGQEEFGAMRE------   72 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCC-SSCCTT--CCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHH------
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCC-cccccc--cccceeeEecc-CCeeeeeeccccccccccccccc------
Confidence            344579999999999999999999876532 221111  11122222333 33  3578899999987433221      


Q ss_pred             HHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                           ..+..+|++++|+|.++.-+... ..+...+.+..... ..|+++|.||+|+..
T Consensus        73 -----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~p~ilvgnK~Dl~~  125 (173)
T d2fn4a1          73 -----QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD-DFPVVLVGNKADLES  125 (173)
T ss_dssp             -----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSS-CCCEEEEEECGGGGG
T ss_pred             -----hhhccceeeeeecccccccccchhhhhhHHHHHHhccC-CCceEEEEEeechhh
Confidence                 22334699999999985433333 45555555443222 258999999999864

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2e-16  Score=107.15  Aligned_cols=115  Identities=20%  Similarity=0.107  Sum_probs=72.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-C--CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-D--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+|+++|.+|+|||||++++++......    ..+|....+...... +  ...+.++||||...           ....
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f~~~----~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~-----------~~~~   68 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK-----------FGGL   68 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-----CC----EEEETTEEEEEEEECBTTCCEEEEEEECTTHHH-----------HSSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcc----cccceeccccccccccccccccccccccccccc-----------ccee
Confidence            6899999999999999999987653222    112222222222211 2  24689999999664           2233


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...++..+|++++|+|.+++-+... ..++..+.+..   ...|+++|.||+|+...
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~  122 (170)
T d1i2ma_          69 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDR  122 (170)
T ss_dssp             GGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHH---CSCCEEEEEECCCCSCS
T ss_pred             cchhcccccchhhccccccccccchhHHHHHHHhhcc---CCCceeeecchhhhhhh
Confidence            3457788999999999986544333 44555444432   23699999999998654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.2e-15  Score=103.82  Aligned_cols=115  Identities=19%  Similarity=0.107  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEE-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|.+|+|||||++.+++.......    .+|..... ..... .....+.++|++|...           +....
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~-----------~~~~~   67 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFPEVY----VPTVFENYVADIEVDGKQVELALWDTAGLED-----------YDRLR   67 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GTTTG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCc----CCceeeeccccccccccceeeeccccCccch-----------hcccc
Confidence            68999999999999999999876533221    12222111 11222 1223689999999876           33334


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|.+++-+...  ..+...+... ...  .|+++|.||+|+...
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~--~piilvgnK~Dl~~~  121 (177)
T d1kmqa_          68 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF-CPN--VPIILVGNKKDLRND  121 (177)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STT--SCEEEEEECGGGTTC
T ss_pred             hhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHh-CCC--CceEEeeecccccch
Confidence            567889999999999985433222  3344444443 222  599999999999765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=7.9e-16  Score=107.07  Aligned_cols=121  Identities=10%  Similarity=0.141  Sum_probs=73.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      +++|+++|++|||||||+|+|++....      ...|.........+ ++..+.++||||.....   ..    +.....
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~------~~tt~~~~~~~~~~-~~~~~~l~D~~g~~~~~---~~----~~~~~~   68 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVR------PTVVSQEPLSAADY-DGSGVTLVDFPGHVKLR---YK----LSDYLK   68 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCC------CBCCCSSCEEETTG-GGSSCEEEECCCCGGGT---HH----HHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC------CeEEecceEEEEEe-CCeEEEEEecccccchh---hH----HHHHHH
Confidence            379999999999999999999986532      11222222222323 56678999999987522   22    233333


Q ss_pred             hccCCceEEEEEEeCCCCCC--HHHHHHHHHHHHHHhh--hhcCcEEEEEeCcCCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFS--QEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~--~~~~~~l~~l~~~~~~--~~~~~~~iv~tk~D~~~~~  154 (174)
                      ......+.++++++......  .....++..+......  ....|+++++||+|+....
T Consensus        69 ~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          69 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             HHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            34455588999998753221  2223333222222111  1236899999999997653

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=7.7e-16  Score=109.54  Aligned_cols=125  Identities=19%  Similarity=0.247  Sum_probs=88.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh---CCccc--------------------------ccccCCCCcceeeEEEEEEEeCCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSIL---GRRAF--------------------------KSRASSSGVTSTCEMQRTVLKDGQ   70 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~---~~~~~--------------------------~~~~~~~~~t~~~~~~~~~~~~~~   70 (174)
                      ...|+++|+.++|||||+..|+   |....                          .......+.|.......+.+ +++
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~   84 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKY   84 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SSE
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc-CCE
Confidence            3689999999999999998885   21100                          00011236677777777777 789


Q ss_pred             EEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHHhhhhcCcEEE
Q 030624           71 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMIV  143 (174)
Q Consensus        71 ~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~~i  143 (174)
                      .+.++||||+.+           +..-+...+..+|++++|+|+.++       ...++++.+.....+ +-   +++++
T Consensus        85 ~i~iiDtPGH~d-----------f~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~-gv---~~iiv  149 (239)
T d1f60a3          85 QVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL-GV---RQLIV  149 (239)
T ss_dssp             EEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT-TC---CEEEE
T ss_pred             EEEEEECCCcHH-----------HHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc-CC---CeEEE
Confidence            999999999998           555555678888999999999744       334566666444443 22   46889


Q ss_pred             EEeCcCCCCCChhhHHH
Q 030624          144 VFTGGDELEDNDETLED  160 (174)
Q Consensus       144 v~tk~D~~~~~~~~~~~  160 (174)
                      ++||+|+...+...+++
T Consensus       150 ~iNKmD~~~~d~~~~~~  166 (239)
T d1f60a3         150 AVNKMDSVKWDESRFQE  166 (239)
T ss_dssp             EEECGGGGTTCHHHHHH
T ss_pred             EEECCCCCCCCHHHHHH
Confidence            99999998765444433

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.7e-15  Score=102.10  Aligned_cols=119  Identities=18%  Similarity=0.166  Sum_probs=73.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      +..+|+++|.+|+|||||++++++............   ......... ++  ..+.++|++|....           ..
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~---~~~~~~~~~-~~~~~~l~~~d~~g~~~~-----------~~   66 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE---DFYRKEIEV-DSSPSVLEILDTAGTEQF-----------AS   66 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC---EEEEEEEEE-TTEEEEEEEEECCCTTCC-----------HH
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee---eeeeeeeec-CcceEeeccccCCCcccc-----------cc
Confidence            457999999999999999999997654322111111   111112222 32  45788999997762           12


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ........+|++++|+|.+++-+... ..+...+..... ....|+++|.||+|+...
T Consensus        67 ~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~  123 (167)
T d1kaoa_          67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESE  123 (167)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGG
T ss_pred             chHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhcc-CCCCCEEEEEEccchhhc
Confidence            22223455699999999985443333 444444444322 223589999999998653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.7e-15  Score=102.82  Aligned_cols=119  Identities=18%  Similarity=0.103  Sum_probs=75.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcce-eeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHH
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS-TCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEI   94 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~   94 (174)
                      .....+|+++|..|+|||||++.++..... ....   +|. .......... ....+.+|||+|.....          
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~-~~~~---~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~----------   71 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYANDAFP-EEYV---PTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD----------   71 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCC-CSCC---CSSCCCEEEEEESSSCEEEEEEECCCCSSSST----------
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhhCCCC-CcCC---CceeeeeeEEEeeCCceEEeecccccccchhh----------
Confidence            334578999999999999999999876532 2211   111 1111122221 12357899999987632          


Q ss_pred             HHHHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                       ......+.++|++++|+|.+++-+...  ..+...++.. ...  .|+++|.||+|+.+.
T Consensus        72 -~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~--~~~ilvgnK~Dl~~~  128 (185)
T d2atxa1          72 -RLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APN--VPFLLIGTQIDLRDD  128 (185)
T ss_dssp             -TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-STT--CCEEEEEECTTSTTC
T ss_pred             -hhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhc-CCC--CCeeEeeeccccccc
Confidence             233357788999999999985433322  3344444433 222  589999999998754

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.2e-16  Score=105.77  Aligned_cols=117  Identities=15%  Similarity=0.145  Sum_probs=74.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+|+++|++|+|||||++++++.........  ..+........... ....+.++|++|......           ...
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----------~~~   70 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS-----------ITR   70 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC-----------CCH
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCccc--ceeeccceeeeeeeeeEEEEEeecccCccchhh-----------HHH
Confidence            6899999999999999999987653322211  11121222222221 234679999999876332           222


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      .....+|++++|+|.+++-+... ..++..+.+....+  .|+++|.||+|...
T Consensus        71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~--~piilv~nK~D~~~  122 (173)
T d2a5ja1          71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLES  122 (173)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGG
T ss_pred             HHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCC--CeEEEEecCCchhh
Confidence            34567899999999985433333 45555555543333  68999999999754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.4e-15  Score=100.30  Aligned_cols=119  Identities=18%  Similarity=0.163  Sum_probs=71.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|+.|+|||||++.+++....... ................ .+  ..+.+|||||...           +....
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~~~   73 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGT-FISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQER-----------FRSVT   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCCC-CCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccc-ccceeeeeeEEEEEEe-cCcEEEEEEEECCCchh-----------hHHHH
Confidence            68999999999999999998876532221 1121222222222333 33  3578999999876           33344


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ......+|++++|+|.++.-+... ..+...+......  ..+++++.||+|.....
T Consensus        74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~~k~d~~~~~  128 (170)
T d2g6ba1          74 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDSAHER  128 (170)
T ss_dssp             -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECCSTTSCC
T ss_pred             HHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCC--CceEEEEEeeechhhcc
Confidence            456778899999999984332222 3333333333222  26899999999987653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=2.7e-15  Score=100.81  Aligned_cols=121  Identities=16%  Similarity=0.084  Sum_probs=74.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+|+++|..|+|||||++.+++...........+............ ....+.++|++|....          .......
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~   71 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG-ERIKIQLWDTAGQERF----------RKSMVQH   71 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETT-EEEEEEEEECCCSHHH----------HTTTHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeec-cceEEEEEeccCchhh----------cccccee
Confidence            6899999999999999999987654333222222222222222211 2346789999986531          0111223


Q ss_pred             ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+.++|++++|+|.+++-+... ..++..+.+.... ...|+++|.||+|+...
T Consensus        72 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pi~lvgnK~Dl~~~  124 (165)
T d1z06a1          72 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-NDIPRILVGNKCDLRSA  124 (165)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCC-SCCCEEEEEECTTCGGG
T ss_pred             eecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccC-CCCeEEEEeccccchhc
Confidence            4678899999999985433333 3455555544322 23589999999998654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=9e-15  Score=101.75  Aligned_cols=118  Identities=18%  Similarity=0.154  Sum_probs=71.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE--eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +.|+++|++|+|||||+|+|++...... .  .  |.........+  .....+.++|+||...       .   ....+
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~-~--~--t~~~~~~~~~~~~~~~~~~~~~d~~g~~~-------~---~~~~~   65 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQYRDT-Q--T--SITDSSAIYKVNNNRGNSLTLIDLPGHES-------L---RFQLL   65 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCCCB-C--C--CCSCEEEEEECSSTTCCEEEEEECCCCHH-------H---HHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcc-c--C--CeeEEEEEEEEeeeeeeeeeeeecccccc-------c---cchhh
Confidence            4689999999999999999998664322 1  1  22222222332  1346789999999763       1   11233


Q ss_pred             HhccCCceEEEEEEeCCCCCCHH--HHHHH-HHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQE--EEAAL-HSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~--~~~~l-~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ......++.+++|+|.++.....  ..+++ +.+..........|++|+.||+|+...
T Consensus        66 ~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          66 DRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             HHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             hhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            34456779999999998432211  12222 222222111222588999999999764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.60  E-value=2.7e-15  Score=101.30  Aligned_cols=117  Identities=21%  Similarity=0.183  Sum_probs=71.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      -.+|+++|.+|+|||||++++++........    +|..... ..... ++  ..+.++|++|..+.           ..
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~----~T~~~~~~~~~~~-~~~~~~l~i~d~~g~~~~-----------~~   67 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYE----PTKADSYRKKVVL-DGEEVQIDILDTAGQEDY-----------AA   67 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCC----TTCCEEEEEEEEE-TTEEEEEEEEECCC---C-----------HH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccC----Ccccccccccccc-ccccccccccccccccch-----------hh
Confidence            3689999999999999999988755322211    1221111 12222 33  35788999998862           12


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+..+|++++|+|.++.-+... ..|++.+.+.... ...|+++|.||+|+...
T Consensus        68 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piiivgnK~Dl~~~  124 (168)
T d1u8za_          68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK  124 (168)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGG
T ss_pred             hhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCC-CCCcEEEEecccccccc
Confidence            22223445699999999985433333 4555555554322 22589999999998643

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.7e-15  Score=100.97  Aligned_cols=121  Identities=17%  Similarity=0.168  Sum_probs=76.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +..+|+++|.+|||||||++++++...........+  ...............+.++|++|....           ....
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~d~~~~~~~-----------~~~~   68 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE--DSYRKQVVIDGETCLLDILDTAGQEEY-----------SAMR   68 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSE--EEEEEEEEETTEEEEEEEEEECCCGGG-----------HHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccc--eeeccceeeeceeeeeeeeeccCcccc-----------ccch
Confidence            347899999999999999999998654322111111  111111111112345789999998862           2222


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..++++++|+|.+++-+... ..|+..+.+....+ ..|+++|.||+|+...
T Consensus        69 ~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~  123 (166)
T d1ctqa_          69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD-DVPMVLVGNKCDLAAR  123 (166)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCS-SCCEEEEEECTTCSCC
T ss_pred             hhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCC-CCeEEEEecccccccc
Confidence            233456699999999985433333 56666666654322 2589999999998654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.6e-15  Score=102.59  Aligned_cols=119  Identities=23%  Similarity=0.224  Sum_probs=75.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+|+++|..|+|||||++.+++...........  .. ........ ..  ..+.+||++|........          
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~--~~-~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~----------   69 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI--ED-SYLKHTEI-DNQWAILDVLDTAGQEEFSAMR----------   69 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTC--CE-EEEEEEEE-TTEEEEEEEEECCSCGGGCSSH----------
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcce--ee-cccccccc-ccccccccccccccccccccch----------
Confidence            4789999999999999999998765322211111  11 11122222 32  457899999988643221          


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                       ...++++|++++|+|.+++-+... ..|+..+.+.... ...|++++.||+|+....
T Consensus        70 -~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~-~~~p~ilvgnK~Dl~~~~  125 (169)
T d1x1ra1          70 -EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLR  125 (169)
T ss_dssp             -HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTC
T ss_pred             -hhhhhhccEEEEecccccchhhhccchhhHHHHhhccc-cCccEEEEecccchhhhc
Confidence             123445699999999985443333 4566666555332 225899999999987654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.58  E-value=2.4e-14  Score=99.59  Aligned_cols=120  Identities=17%  Similarity=0.183  Sum_probs=76.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccccc-CC-----CCcceeeEEEEE----------------------EEeCCc
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRA-SS-----SGVTSTCEMQRT----------------------VLKDGQ   70 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~-~~-----~~~t~~~~~~~~----------------------~~~~~~   70 (174)
                      +..+|+++|+.++|||||+++|++........ ..     ............                      .....+
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            34799999999999999999999743211100 00     000000000000                      000113


Q ss_pred             EEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHHhhhhcCcEEEEEeCcC
Q 030624           71 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  149 (174)
Q Consensus        71 ~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D  149 (174)
                      .+.++||||..+           +.+.....+..+|++++|+|+.+++ ...+++.+..+... +.   +++++++||+|
T Consensus        87 ~~~iiD~PGH~d-----------f~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~-~i---~~iIV~vNK~D  151 (205)
T d2qn6a3          87 RISFIDAPGHEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVD  151 (205)
T ss_dssp             EEEEEECSCHHH-----------HHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TC---CCEEEEEECGG
T ss_pred             EEEEeccchHHH-----------HHhhhhcceeccccccccccccccccchhHHHHHHHHHHc-CC---ceeeeccccCC
Confidence            578999999886           5555555677889999999998776 55667676655553 22   47899999999


Q ss_pred             CCCC
Q 030624          150 ELED  153 (174)
Q Consensus       150 ~~~~  153 (174)
                      +...
T Consensus       152 l~~~  155 (205)
T d2qn6a3         152 VVSK  155 (205)
T ss_dssp             GSCH
T ss_pred             Cccc
Confidence            9865

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.5e-15  Score=103.36  Aligned_cols=119  Identities=16%  Similarity=0.161  Sum_probs=73.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+|+++|..|+|||||++++++.......  ....+.......+... ....+.++||||..+...           ...
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~   74 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTDDTFDPEL--AATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT-----------LTP   74 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC-----------SHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCcc--ccceeecceeEEEEEeccccEEEEEECCCchhhHH-----------HHH
Confidence            68999999999999999999886643222  1222232233333331 134689999999876321           122


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .+..++|++++|+|.+++-+... ..++..+.+.. .....+++++.||.|....
T Consensus        75 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~i~~~~nk~d~~~~  128 (177)
T d1x3sa1          75 SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYC-TRNDIVNMLVGNKIDKENR  128 (177)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCC-SCSCCEEEEEEECTTSSSC
T ss_pred             HHHhcCCEEEEEEECCCccccccchhhhhhhcccc-cccceeeEEEeeccccccc
Confidence            34578899999999884322222 33333333221 1233688899999998654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1.1e-15  Score=102.95  Aligned_cols=117  Identities=14%  Similarity=0.171  Sum_probs=71.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|.+|+|||||++++++........  ...+.......+.. .+  ..+.++||||.......           .
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~--~t~~~~~~~~~i~~-~~~~~~~~i~Dt~G~~~~~~~-----------~   68 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFI--TTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTI-----------T   68 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCC-----------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccC--CccceeEEEEEEEE-CCEEEEEEEEECCCchhhHHH-----------H
Confidence            689999999999999999998865432211  12222222233333 33  35678999997653221           2


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+..+|++++|+|.+++-+... ..+...+.....  ...+++++.+|.|....
T Consensus        69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~  122 (166)
T d1g16a_          69 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETR  122 (166)
T ss_dssp             HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTC
T ss_pred             HHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhcccc--Ccceeeeecchhhhhhh
Confidence            235678899999999985432222 223333333322  22578899999998654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=3e-15  Score=101.15  Aligned_cols=116  Identities=22%  Similarity=0.195  Sum_probs=74.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|..|+|||||++.+++...........+  .......+.. .+  ..+.++||+|....           ....
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~--~~~~~~~i~~-~~~~~~l~i~d~~g~~~~-----------~~~~   69 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG--AAFLTQRVTI-NEHTVKFEIWDTAGQERF-----------ASLA   69 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS--EEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------GGGH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccc--ceeecccccc-ccccccccccccCCchhH-----------HHHH
Confidence            6899999999999999999987764333221122  1112222333 32  46899999998762           2222


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ..++..+|++++|+|.+++.+... ..+...+......  ..+.+++.||+|+.+
T Consensus        70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~v~nk~d~~~  122 (170)
T d1ek0a_          70 PMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDMLQ  122 (170)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred             HHHHhccceEEEEEeCCcccchhhhhhhhhhhcccccc--ccceeeeeccccccc
Confidence            345678899999999985444443 3333333333222  368999999999854

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=2.6e-15  Score=102.76  Aligned_cols=120  Identities=14%  Similarity=0.117  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      .+|+++|.+|+|||||++.+++.........+.+.+.  ........ ....+.++|+||.......           ..
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~--~~~~~~~~~~~~~~~~~d~~g~~~~~~~-----------~~   69 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF--LTKEVMVDDRLVTMQIWDTAGQERFQSL-----------GV   69 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEE--EEEEEESSSCEEEEEEEEECSSGGGSCS-----------CC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceee--eeeeeeeCCceEEEEeeecCCccccccc-----------cc
Confidence            6899999999999999999997653322111112222  11122221 2246789999997753221           23


Q ss_pred             hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhh--hcCcEEEEEeCcCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK--IFDYMIVVFTGGDELED  153 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~~~  153 (174)
                      .....+|++++++|.++.-+... ..+++.+.......  ...|+++|.||+|+...
T Consensus        70 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~  126 (184)
T d1vg8a_          70 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR  126 (184)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred             ccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccccc
Confidence            45678899999999974332222 45565555543321  22589999999998654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.4e-15  Score=100.44  Aligned_cols=117  Identities=22%  Similarity=0.194  Sum_probs=68.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|.+|+|||||++++++...........   .......... ++  ..+.++|++|..+..           ...
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~---~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~-----------~~~   70 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI---EDSYTKQCVI-DDRAARLDILDTAGQEEFG-----------AMR   70 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTC---CEEEEEEEEE-TTEEEEEEEEECC----CC-----------HHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCccc---ccceeeeeee-ccccccccccccccccccc-----------ccc
Confidence            689999999999999999998765322211111   1122222222 33  367899999988732           111


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ......+|++++|+|.+++-+... ..+...+.+..... ..|+++|.||+|+...
T Consensus        71 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ilvgnK~Dl~~~  125 (171)
T d2erya1          71 EQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRD-EFPMILIGNKADLDHQ  125 (171)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS-CCSEEEEEECTTCTTS
T ss_pred             cccccccceEEEeeccccccchhhHHHHhHHHHhhcccC-CCCEEEEEeccchhhh
Confidence            223345699999999984333332 34444444433222 2688999999998654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.7e-15  Score=100.44  Aligned_cols=119  Identities=17%  Similarity=0.156  Sum_probs=74.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE-EEEE-eCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      +..+|+++|.+|+|||||+++++.........    .|...... .... .....+.++|++|......           
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~----~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------   66 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYD----PTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-----------   66 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCC----CCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-----------
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccC----CccccccceeEEeeeeEEEeccccccCcccccc-----------
Confidence            45789999999999999999998766322211    12221111 1222 1224579999999887321           


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+..+|++++|+|.+++-+... ..+++.+.+.... ...|+++|.||+|+...
T Consensus        67 ~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~~p~ilvgnK~Dl~~~  123 (167)
T d1c1ya_          67 MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDE  123 (167)
T ss_dssp             HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGG
T ss_pred             cccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCC-CCCeEEEEEEecCcccc
Confidence            11223445699999999985433333 4555555544322 22589999999998654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.56  E-value=2.2e-14  Score=98.98  Aligned_cols=119  Identities=16%  Similarity=0.254  Sum_probs=75.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccc-ccCCCCcceeeEEEEEEE----------------------eCCcEEEEEe
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVL----------------------KDGQVVNVID   76 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~----------------------~~~~~~~~iD   76 (174)
                      ..+|+++|+.++|||||+|+|++...-.. .....+.|....+....+                      .....+.++|
T Consensus         5 ~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD   84 (195)
T d1kk1a3           5 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID   84 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred             cEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeec
Confidence            36789999999999999999997432110 001112222111111100                      0123478999


Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           77 TPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        77 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      |||..+           +..........+|++++++++.++. ...+++.+..+... +.   +++++++||+|+.+.
T Consensus        85 tPGh~~-----------f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~---~~iiv~inK~D~~d~  147 (195)
T d1kk1a3          85 APGHEA-----------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVDK  147 (195)
T ss_dssp             CSSHHH-----------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH
T ss_pred             cchhhh-----------hhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cC---ccceeeeecccchhh
Confidence            999664           5555555666789999999998775 45566776655554 22   468889999999865

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.3e-14  Score=99.82  Aligned_cols=115  Identities=23%  Similarity=0.160  Sum_probs=74.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ..+|+++|.+|+|||||++.+.+.... ..   ..+|..... ..... .+  ..+.+||++|..+.           ..
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~-~~---~~~t~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~-----------~~   66 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFP-SE---YVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDY-----------DR   66 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCC-SS---CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------TT
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCC-CC---cCCceeeecceeEee-CCceeeeeccccccchhh-----------hh
Confidence            478999999999999999999876532 21   112222222 12222 32  36789999998863           33


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      .....+..+|++++|+|.+++-+...  ..+.+.+... ...  .|+++|.||+|+...
T Consensus        67 ~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~--~~i~lvgnK~Dl~~~  122 (191)
T d2ngra_          67 LRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPK--TPFLLVGTQIDLRDD  122 (191)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTT--CCEEEEEECGGGGGC
T ss_pred             hhhhcccccceeecccccchHHHHHHHHHHHHHHHhhc-CCC--CceEEEecccccccc
Confidence            34457789999999999985433333  2233333332 222  689999999998654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.56  E-value=4.6e-14  Score=93.71  Aligned_cols=115  Identities=13%  Similarity=0.047  Sum_probs=73.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+|+++|++|||||||+|++++........     +.......... ....+.++|+||...           .......
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~d~~g~~~-----------~~~~~~~   63 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH   63 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCC-----CSSCCEEEEEC-SSCEEEEEECCCCGG-----------GHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcccc-----ceeeEEEEEee-eeEEEEEecCCCccc-----------chhhhhh
Confidence            479999999999999999998765322211     11111222233 567899999999876           2333344


Q ss_pred             ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....++++++++|..+...... ..++..+..... ....|++++.||.|+...
T Consensus        64 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~k~d~~~~  116 (160)
T d1r8sa_          64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNA  116 (160)
T ss_dssp             HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred             hhccceeEEEEEEecChHHHHHHHHHHHHHHHhhc-ccCceEEEEeeccccccc
Confidence            5677899999999985543333 222222222111 123689999999998765

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.4e-14  Score=97.65  Aligned_cols=117  Identities=21%  Similarity=0.133  Sum_probs=71.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      ..+|+++|++|+|||||++.+++......    ..+|....+......++  ..+.+||++|....    ..    .   
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~----~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~----~~----~---   66 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWE----YDPTLESTYRHQATIDDEVVSMEILDTAGQEDT----IQ----R---   66 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSC----CCTTCCEEEEEEEEETTEEEEEEEEECCCCCCC----HH----H---
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCc----cCCceeccccccccccccceEEEEeeccccccc----cc----c---
Confidence            37899999999999999999998653222    12232222222222133  46789999998752    11    1   


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                       ...+..+|++++|+|.+++-+... ..+...+..... ....|+++|.||+|+...
T Consensus        67 -~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~  121 (168)
T d2atva1          67 -EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHS  121 (168)
T ss_dssp             -HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGG
T ss_pred             -hhhhcccccceeecccCCccchhhhhhhccccccccc-ccCcceeeeccchhhhhh
Confidence             112345699999999985543333 233333333322 223699999999998643

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.9e-14  Score=97.46  Aligned_cols=130  Identities=18%  Similarity=0.109  Sum_probs=80.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|.+|+|||||++.+++.........+.+  .......... .+  ..+.++|++|...           .....
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~~~i~d~~g~~~-----------~~~~~   72 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG--VEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FRSLR   72 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCC----CCS--EEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCcccccee--eeeeeeeeee-cCceeeEeeecccCcce-----------ehhhh
Confidence            5799999999999999999987653222111111  1111222222 22  4568999999775           34445


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhh--hcCcEEEEEeCcCCCCCC--hhhHHHHhcc
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK--IFDYMIVVFTGGDELEDN--DETLEDYLGR  164 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~~~~--~~~~~~~~~~  164 (174)
                      ......+|++++++|.++..+... ..|++.+.+.....  ...|+++|.||+|+.+.+  ....+++.++
T Consensus        73 ~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~  143 (174)
T d1wmsa_          73 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD  143 (174)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH
T ss_pred             hhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHH
Confidence            567788899999999984433332 45666666554321  125899999999986532  1234556554

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=2.5e-14  Score=97.08  Aligned_cols=124  Identities=21%  Similarity=0.294  Sum_probs=76.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      -.|+++|.+|+|||||+|+|++......  .....|...............+..+|+|+.....  ..............
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   81 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISIT--SRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE--KRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEEC--CCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH--HHHHHHHHTCCTTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceee--ccCCCceEEEEEeeeecCCceeEeecCCCceecc--hhhhhhhhhhcccc
Confidence            4689999999999999999999764322  2233333333333333366677889999987411  11111111112222


Q ss_pred             ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ....+++++++.+.. ........+...+.+.   .  .+.++++||+|.....
T Consensus        82 ~~~~~~~~l~~~d~~-~~~~~~~~~~~~l~~~---~--~~~i~v~~k~d~~~~~  129 (179)
T d1egaa1          82 SIGDVELVIFVVEGT-RWTPDDEMVLNKLREG---K--APVILAVNKVDNVQEK  129 (179)
T ss_dssp             CCCCEEEEEEEEETT-CCCHHHHHHHHHHHSS---S--SCEEEEEESTTTCCCH
T ss_pred             chhhcceeEEEEecC-ccchhHHHHHHHhhhc---c--Cceeeeeeeeeccchh
Confidence            345678888888887 4444444444333332   2  5789999999988764

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=4.3e-14  Score=104.94  Aligned_cols=116  Identities=22%  Similarity=0.301  Sum_probs=78.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc---ccc-----------cccCCCCcceeeEEEEEEEe---------------CCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRR---AFK-----------SRASSSGVTSTCEMQRTVLK---------------DGQ   70 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~---~~~-----------~~~~~~~~t~~~~~~~~~~~---------------~~~   70 (174)
                      -+.|+++|+.++|||||+.+|+...   ...           ..+...+.|.........+.               +..
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   96 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence            3569999999999999999986211   100           00111234444444444331               224


Q ss_pred             EEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCC
Q 030624           71 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE  150 (174)
Q Consensus        71 ~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~  150 (174)
                      .+.++||||+.++.       .+....++.    +|++++|+|+.+++...++..++...+..     .|.++++||+|.
T Consensus        97 ~inliDtPGh~dF~-------~ev~~al~~----~D~allVVda~eGv~~qT~~~~~~a~~~~-----~p~i~viNKiDr  160 (341)
T d1n0ua2          97 LINLIDSPGHVDFS-------SEVTAALRV----TDGALVVVDTIEGVCVQTETVLRQALGER-----IKPVVVINKVDR  160 (341)
T ss_dssp             EEEEECCCCCCSSC-------HHHHHHHHT----CSEEEEEEETTTBSCHHHHHHHHHHHHTT-----CEEEEEEECHHH
T ss_pred             EEEEEcCCCcHHHH-------HHHHHHHhh----cCceEEEEecccCcchhHHHHHHHHHHcC-----CCeEEEEECccc
Confidence            58899999999853       334444444    49999999999899999998887665543     589999999997


Q ss_pred             C
Q 030624          151 L  151 (174)
Q Consensus       151 ~  151 (174)
                      .
T Consensus       161 ~  161 (341)
T d1n0ua2         161 A  161 (341)
T ss_dssp             H
T ss_pred             c
Confidence            5

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=1.3e-13  Score=93.74  Aligned_cols=130  Identities=15%  Similarity=0.179  Sum_probs=73.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      .....+|+++|.+|+|||||+|+|++.......  ....+............+......++++.................
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLART--SKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC---------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEee--cccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhh
Confidence            444599999999999999999999997643222  111222222222222244444444555444433333333333444


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...........++.+.+............+..+....     .+.++++||+|+...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~k~D~~~~  142 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSN-----IAVLVLLTKADKLAS  142 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTT-----CCEEEEEECGGGSCH
T ss_pred             hhhhhhhheeEEEEeecccccchhHHHHHHHHhhhcc-----ccccchhhhhhccCH
Confidence            4444455567777777777677777777766665543     588999999999875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.5e-14  Score=98.78  Aligned_cols=117  Identities=18%  Similarity=0.062  Sum_probs=74.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      ..+|+++|.+|+|||||++.+++.........+..   ......... .....+.++|++|....           ....
T Consensus         5 ~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~---~~~~~~~~~~~~~~~~~~~d~~g~~~~-----------~~~~   70 (183)
T d1mh1a_           5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF---DNYSANVMVDGKPVNLGLWDTAGQEDY-----------DRLR   70 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC---CEEEEEEEETTEEEEEEEECCCCSGGG-----------TTTG
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCccccccee---eceeeeeeccCcceEEEeecccccccc-----------hhhh
Confidence            47999999999999999999987663322111111   111111222 12245689999997762           2333


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ..++..+|++++|+|.++.-+...  ..+...++.. ..  ..|+++|.||+|+...
T Consensus        71 ~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~-~~--~~piilvgnK~Dl~~~  124 (183)
T d1mh1a_          71 PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH-CP--NTPIILVGTKLDLRDD  124 (183)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-ST--TSCEEEEEECHHHHTC
T ss_pred             hhcccccceeeeeeccchHHHHHHHHHHHHHHHHHh-CC--CCcEEEEeecccchhh
Confidence            456788999999999985433332  2344444433 22  2599999999998654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.53  E-value=2.4e-14  Score=100.97  Aligned_cols=118  Identities=23%  Similarity=0.271  Sum_probs=75.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcc-----------------------------cccccCCCCcceeeEEEEEEEeCCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRA-----------------------------FKSRASSSGVTSTCEMQRTVLKDGQ   70 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~-----------------------------~~~~~~~~~~t~~~~~~~~~~~~~~   70 (174)
                      ..+|+++|+.++|||||+.+|+....                             ........+.|........++ ++.
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~~   81 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KKY   81 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEec-CCc
Confidence            47899999999999999998852110                             000112234555555566666 778


Q ss_pred             EEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCC-------HHHHHHHHHHHHHHhhhhcCcEEE
Q 030624           71 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS-------QEEEAALHSLQTLFGKKIFDYMIV  143 (174)
Q Consensus        71 ~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~~i  143 (174)
                      .+.++||||+.+           +.........-+|++++|+|+.++..       ....+.+...... +.   +++++
T Consensus        82 ~i~iiDtPGH~d-----------f~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~-~~---~~iIv  146 (224)
T d1jnya3          82 FFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-GL---DQLIV  146 (224)
T ss_dssp             EEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-TC---TTCEE
T ss_pred             eeEEeeCCCcHH-----------HHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh-CC---CceEE
Confidence            999999999998           55555567778899999999986642       2344444333332 22   47899


Q ss_pred             EEeCcCCCCC
Q 030624          144 VFTGGDELED  153 (174)
Q Consensus       144 v~tk~D~~~~  153 (174)
                      ++||+|+...
T Consensus       147 ~iNK~D~~~~  156 (224)
T d1jnya3         147 AVNKMDLTEP  156 (224)
T ss_dssp             EEECGGGSSS
T ss_pred             EEEcccCCCc
Confidence            9999998753

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.3e-14  Score=98.93  Aligned_cols=115  Identities=17%  Similarity=0.123  Sum_probs=72.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcce-eeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS-TCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      .+|+++|.+|+|||||++.++....+....    +|. .......... ....+.+||++|.....           ...
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~~~~~----~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----------~~~   67 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFPENYV----PTVFENYTASFEIDTQRIELSLWDTSGSPYYD-----------NVR   67 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSSCC----CCSEEEEEEEEECSSCEEEEEEEEECCSGGGT-----------TTG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCccC----CceeecccccccccceEEeecccccccccccc-----------ccc
Confidence            688999999999999999998766432211    121 1222222221 22457899999987632           223


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...+.++|++++|+|.+++-+...  ..+...+... ...  .|+++|.||+|+...
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~~--~~iilVgnK~Dl~~~  121 (179)
T d1m7ba_          68 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPN--TKMLLVGCKSDLRTD  121 (179)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTT--CEEEEEEECGGGGGC
T ss_pred             cchhhhhhhhheeeecccCCCHHHHHHHHHHHHhcc-CCc--ceEEEEEeccccccc
Confidence            356788999999999985433232  2233333332 223  699999999998643

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.1e-13  Score=93.55  Aligned_cols=120  Identities=23%  Similarity=0.162  Sum_probs=71.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccc-cCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK   96 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~   96 (174)
                      ..+|+++|..|+|||||++.+++....... ..+.+....  ...+.. ++  ..+.++|+|+...     .   .++  
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~--~~~~~~-~~~~~~~~~~d~~~~~g-----~---e~~--   69 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTY--ERTLMV-DGESATIILLDMWENKG-----E---NEW--   69 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEE--EEEEEE-TTEEEEEEEECCTTTTH-----H---HHH--
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecc--eeeecc-CCceeeeeeeccccccc-----c---ccc--
Confidence            378999999999999999999876532111 111111111  122222 22  3467899886442     1   111  


Q ss_pred             HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....++..+|++++|+|.++.-+... ..+...+....+. ...|+++|.||+|+...
T Consensus        70 ~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~  126 (172)
T d2g3ya1          70 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRC  126 (172)
T ss_dssp             HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGG-TTSCEEEEEECTTCGGG
T ss_pred             cccccccccceeeeeecccccchhhhhhhhhhhhhhcccc-CCceEEEEecccccccc
Confidence            23446789999999999985433332 3344434433221 23689999999998654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.53  E-value=7.8e-14  Score=94.32  Aligned_cols=118  Identities=14%  Similarity=0.112  Sum_probs=72.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~   98 (174)
                      +..+|+++|.+|||||||+++|.+......... ..    ........ .+..+.++|+++.....           ...
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~-~~----~~~~~~~~-~~~~~~~~d~~~~~~~~-----------~~~   76 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-IG----SNVEEIVI-NNTRFLMWDIGGQESLR-----------SSW   76 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECC-SC----SSCEEEEE-TTEEEEEEECCC----C-----------GGG
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCccccc-cc----eeEEEEee-cceEEEEeccccccccc-----------cch
Confidence            348999999999999999999998764322211 11    11222223 67789999999876522           222


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHHHH-HHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ......++.++++++.++........ ........ ......|+++|.||+|+....
T Consensus        77 ~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~  132 (177)
T d1zj6a1          77 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH-EDLRKAGLLIFANKQDVKECM  132 (177)
T ss_dssp             HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTS-GGGTTCEEEEEEECTTSTTCC
T ss_pred             hhhhccceeeeeecccccccchhhhhhhhhhhhhc-ccccceEEEEEEEcccccccC
Confidence            23455679999999998544443322 22212211 122336999999999987653

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.7e-15  Score=101.12  Aligned_cols=118  Identities=14%  Similarity=0.072  Sum_probs=71.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-----------CcEEEEEeCCCCCCCCCChHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-----------GQVVNVIDTPGLFDFSAGSEF   89 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------~~~~~~iDtpG~~~~~~~~~~   89 (174)
                      .+|+++|++|+|||||++.+++........  ...+.......+.+..           ...+.++||||..+       
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~-------   76 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFI--TTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER-------   76 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSCCCCEEE--EEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH-------
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCccC--CcccceeeEEEEEEecccccccccccceEEeccccCCcchh-------
Confidence            689999999999999999999865322211  1111111111111111           13578999999654       


Q ss_pred             HHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhh--hhcCcEEEEEeCcCCCCC
Q 030624           90 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELED  153 (174)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~iv~tk~D~~~~  153 (174)
                          +......++.++|++++|+|.++.-+...  ...++.+....  ....|+++|.||.|+...
T Consensus        77 ----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~  136 (186)
T d2f7sa1          77 ----FRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQ  136 (186)
T ss_dssp             ----HHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred             ----hHHHHHHHHhcCCEEEEEEecccccccee--eeeccchhhhhccCCCceEEEEeeeccchhh
Confidence                44555556788899999999984322211  22222222211  122578999999998654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=1.4e-13  Score=91.47  Aligned_cols=114  Identities=10%  Similarity=0.051  Sum_probs=76.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA  101 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~  101 (174)
                      +|+++|++|+|||||+|+|++.....     ..+|.........+ .+....++|+++...           ........
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~   64 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSEELAI-GNIKFTTFDLGGHIQ-----------ARRLWKDY   64 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-----CCCCCSCEEEEECC-TTCCEEEEECCCSGG-----------GGGGGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-----eeceeeEeEEEecc-CCeeEEEEeeccchh-----------hhhhHhhh
Confidence            78999999999999999999876422     22333333333434 567789999998765           23334456


Q ss_pred             cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          102 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       102 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ...++.+++++|..+...... ..+.....+. ......|++++.||.|+...
T Consensus        65 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~~~k~d~~~~  116 (166)
T d2qtvb1          65 FPEVNGIVFLVDAADPERFDEARVELDALFNI-AELKDVPFVILGNKIDAPNA  116 (166)
T ss_dssp             CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC-TTTTTCCEEEEEECTTSSSC
T ss_pred             hhheeeeeeeccccchhhhhhhhHHHHhhhhh-hccCCceEEEEecccccccc
Confidence            778899999999985544443 2333222222 22344689999999998764

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=3.5e-13  Score=98.59  Aligned_cols=130  Identities=17%  Similarity=0.196  Sum_probs=75.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC-cceeeEE--------------------------------------
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-VTSTCEM--------------------------------------   61 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~-~t~~~~~--------------------------------------   61 (174)
                      ++++++|..++|||||+|+|+|......+..... ..+....                                      
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT  106 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred             CeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCC
Confidence            5899999999999999999999885444432211 0010000                                      


Q ss_pred             ----------EEEEEeCCcEEEEEeCCCCCCCCCCh--HHHHHHHHHHHHhccCCce-EEEEEEeCCCCCCHHHHHHHHH
Q 030624           62 ----------QRTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIVKCIGMAKDGIH-AVLVVFSVRSRFSQEEEAALHS  128 (174)
Q Consensus        62 ----------~~~~~~~~~~~~~iDtpG~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~il~v~~~~~~~~~~~~~~l~~  128 (174)
                                .....+....+.++||||+.......  ......+...+..+...++ .++++.++...++...  ....
T Consensus       107 ~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~--~~~~  184 (299)
T d2akab1         107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--ALKI  184 (299)
T ss_dssp             TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH--HHHH
T ss_pred             CcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhH--HHHH
Confidence                      01112123458999999998643321  2222233344444444444 5666667764554443  3333


Q ss_pred             HHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624          129 LQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus       129 l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ++...+..  .++++|+||+|..+..
T Consensus       185 ~~~~~~~~--~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         185 AKEVDPQG--QRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHCTTC--SSEEEEEECGGGSCTT
T ss_pred             HHHhCcCC--CceeeEEeccccccch
Confidence            44432222  6899999999998764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.8e-14  Score=94.96  Aligned_cols=114  Identities=21%  Similarity=0.129  Sum_probs=70.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV   95 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~   95 (174)
                      .+..+|+++|..|+|||||++.+++.... .... .  +.......+.. ++  ..+.++||+|....            
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~-~~~~-t--~~~~~~~~i~v-~~~~~~l~i~Dt~g~~~~------------   65 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEK-T--ESEQYKKEMLV-DGQTHLVLIREEAGAPDA------------   65 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCC-CCCC-S--SCEEEEEEEEE-TTEEEEEEEEECSSCCCH------------
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCC-CcCC-c--cceeEEEEeec-CceEEEEEEeeccccccc------------
Confidence            34589999999999999999999887632 2111 1  11111122222 33  45789999997751            


Q ss_pred             HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhh-hcCcEEEEEeCcCCCC
Q 030624           96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDELE  152 (174)
Q Consensus        96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~~iv~tk~D~~~  152 (174)
                      .    ++..+|++++|+|.+++-+... ..+.+.+....... ...|+++|.||.|+..
T Consensus        66 ~----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~  120 (175)
T d2bmja1          66 K----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA  120 (175)
T ss_dssp             H----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCS
T ss_pred             c----cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcch
Confidence            0    2334699999999985433333 44555555443221 2247899999988643

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.49  E-value=1.6e-13  Score=100.77  Aligned_cols=140  Identities=16%  Similarity=0.197  Sum_probs=74.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCC-cceeeE--------------------------------------
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSG-VTSTCE--------------------------------------   60 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~-~t~~~~--------------------------------------   60 (174)
                      .++++++|..++|||||+|+|+|......+..... ..+...                                      
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            36899999999999999999999875434321110 000000                                      


Q ss_pred             ------------------EEEEEEeCCcEEEEEeCCCCCCCCCCh--HHHHHHHHHHHHhccCCceEEEEE-EeCCCCCC
Q 030624           61 ------------------MQRTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIVKCIGMAKDGIHAVLVV-FSVRSRFS  119 (174)
Q Consensus        61 ------------------~~~~~~~~~~~~~~iDtpG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~il~v-~~~~~~~~  119 (174)
                                        ...........+.+|||||+.......  ..........+..+...++.++++ +++...+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~  183 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA  183 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred             HHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccccc
Confidence                              011112123458899999998643321  112233334444445566765544 46553333


Q ss_pred             HHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhcc
Q 030624          120 QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR  164 (174)
Q Consensus       120 ~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~  164 (174)
                      ...  ....+++.-+..  .++++|+||+|..+.. ....++++.
T Consensus       184 ~~~--~~~~~~~~~~~~--~r~i~Vitk~D~~~~~-~~~~~~l~~  223 (306)
T d1jwyb_         184 NSD--ALQLAKEVDPEG--KRTIGVITKLDLMDKG-TDAMEVLTG  223 (306)
T ss_dssp             TCS--HHHHHHHHCSSC--SSEEEEEECTTSSCSS-CCCHHHHTT
T ss_pred             ccH--HHHHHHHhCcCC--CeEEEEEeccccccch-hHHHHHHhC
Confidence            332  223334432222  5899999999998764 344455543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.47  E-value=9.7e-13  Score=87.75  Aligned_cols=117  Identities=15%  Similarity=0.086  Sum_probs=76.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|.+|||||||+|++++......     ..+.......... +...+.++|.++...           ......
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~   67 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGLTS-----------IRPYWR   67 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEEE-TTEEEEEEEECCCGG-----------GGGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcce-----ecccceeeeeecc-CceEEEEeecccccc-----------ccccch
Confidence            47899999999999999999998764321     1232233333333 677889999999876           223333


Q ss_pred             hccCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~  154 (174)
                      ......+.++++++..+....... ......... ......+++++.||.|+....
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~iv~nk~Dl~~~~  122 (169)
T d1upta_          68 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE-EELRKAILVVFANKQDMEQAM  122 (169)
T ss_dssp             GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCC
T ss_pred             hhhhhhhhhhhhhhhhhcchhhhccchhhhhhhh-hccccceEEEEEeeccccccc
Confidence            456777999999998744444432 222222221 122236889999999998653

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=1.5e-13  Score=97.99  Aligned_cols=117  Identities=21%  Similarity=0.235  Sum_probs=66.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh---CCcccc--------------------------cccCCCCcceeeEEEEEEEeCCcE
Q 030624           21 RTVVLVGRTGNGKSATGNSIL---GRRAFK--------------------------SRASSSGVTSTCEMQRTVLKDGQV   71 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~---~~~~~~--------------------------~~~~~~~~t~~~~~~~~~~~~~~~   71 (174)
                      ..|+++|+.++|||||+..|+   |.....                          ......+.+.........+ +...
T Consensus        25 iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~~~  103 (245)
T d1r5ba3          25 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EHRR  103 (245)
T ss_dssp             EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SSEE
T ss_pred             eEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc-ccce
Confidence            569999999999999999984   221000                          0011123344334444445 6678


Q ss_pred             EEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC-------CHHHHHHHHHHHHHHhhhhcCcEEEE
Q 030624           72 VNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-------SQEEEAALHSLQTLFGKKIFDYMIVV  144 (174)
Q Consensus        72 ~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~~iv  144 (174)
                      +.++||||+.+           +..........+|++++|+++.++.       ...+.+.+..+... +.   ++++++
T Consensus       104 i~~iDtPGH~d-----------f~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~-~i---~~iiv~  168 (245)
T d1r5ba3         104 FSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ-GI---NHLVVV  168 (245)
T ss_dssp             EEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT-TC---SSEEEE
T ss_pred             eeeeccccccc-----------chhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc-CC---CeEEEE
Confidence            99999999998           4444445667789999999997653       22455555444443 21   468899


Q ss_pred             EeCcCCCCC
Q 030624          145 FTGGDELED  153 (174)
Q Consensus       145 ~tk~D~~~~  153 (174)
                      +||+|+...
T Consensus       169 iNKmD~~~~  177 (245)
T d1r5ba3         169 INKMDEPSV  177 (245)
T ss_dssp             EECTTSTTC
T ss_pred             EEcCCCCcc
Confidence            999999753

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.44  E-value=2.6e-13  Score=95.87  Aligned_cols=139  Identities=14%  Similarity=0.097  Sum_probs=87.2

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEE---EEEeCCcEEEEEeCCCC
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR---TVLKDGQVVNVIDTPGL   80 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~~iDtpG~   80 (174)
                      ...+.++++|+.+.+  ..++++|+||||||||++.|+|...+++|..............   ....+....++...|.+
T Consensus        15 ~~~al~~vsl~i~~G--e~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L   92 (240)
T d1g2912          15 EVTAVREMSLEVKDG--EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL   92 (240)
T ss_dssp             TEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred             CEEEEcceeeEEcCC--CEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhh
Confidence            444678899999999  9999999999999999999999988777643222211111000   00112235567777887


Q ss_pred             CCCCCChHHH-----------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCC
Q 030624           81 FDFSAGSEFV-----------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFS  119 (174)
Q Consensus        81 ~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~  119 (174)
                      .+..+..+.+                                         .++-...+++...+++++++ ..++..++
T Consensus        93 ~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLll-DEPt~~LD  171 (240)
T d1g2912          93 YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLM-DEPLSNLD  171 (240)
T ss_dssp             CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEE-ECTTTTSC
T ss_pred             cchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEe-cCCCcccC
Confidence            7654433222                                         23333444555667776554 44454888


Q ss_pred             HHH-HHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624          120 QEE-EAALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus       120 ~~~-~~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                      +.. ..+.+.|.+...+.  .-++|++||
T Consensus       172 ~~~~~~i~~~l~~l~~~~--g~tvi~vTH  198 (240)
T d1g2912         172 AKLRVRMRAELKKLQRQL--GVTTIYVTH  198 (240)
T ss_dssp             HHHHHHHHHHHHHHHHHH--TCEEEEEES
T ss_pred             HHHHHHHHHHHHHHHhcc--CCEEEEEcC
Confidence            887 45555566654332  467888888

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=6.2e-14  Score=98.62  Aligned_cols=45  Identities=29%  Similarity=0.344  Sum_probs=39.8

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ...+.++++|+.+.+  ..++++||||||||||++.|+|...+++|.
T Consensus        12 ~~~~l~~isl~i~~G--ei~~liGpsGsGKSTLl~~i~Gl~~p~sG~   56 (232)
T d2awna2          12 EVVVSKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLETITSGD   56 (232)
T ss_dssp             TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CEEEEeeeEEEEcCC--CEEEEECCCCChHHHHHHHHhcCCCCCCCE
Confidence            345678899999999  999999999999999999999998877763

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.43  E-value=1.2e-13  Score=97.44  Aligned_cols=136  Identities=17%  Similarity=0.104  Sum_probs=79.4

Q ss_pred             CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624            4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~   83 (174)
                      +..+.++++|+.+.+  ..++++|+||||||||++.|+|...++.|............   ...+....++...|++.+.
T Consensus        18 ~~~al~~vsl~v~~G--e~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~---~~~~r~ig~v~Q~~~l~~~   92 (239)
T d1v43a3          18 NFTAVNKLNLTIKDG--EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYL---PPKDRNISMVFQSYAVWPH   92 (239)
T ss_dssp             TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS---CGGGGTEEEEEC------C
T ss_pred             CEEEEcceeEEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccC---CcccceEEEEeechhhccc
Confidence            445578899999999  99999999999999999999999887776322111000000   0001224456666666654


Q ss_pred             CCChHHH-----------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHH
Q 030624           84 SAGSEFV-----------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE  122 (174)
Q Consensus        84 ~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~  122 (174)
                      .+..+.+                                         .++-...++....+++++++ ..++..+++..
T Consensus        93 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLll-DEPts~LD~~~  171 (239)
T d1v43a3          93 MTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM-DEPLSNLDAKL  171 (239)
T ss_dssp             CCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE-ESTTTTSCHHH
T ss_pred             chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceee-cCCcccCCHHH
Confidence            3322211                                         23333444445667776554 44444888887


Q ss_pred             -HHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624          123 -EAALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus       123 -~~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                       .+..+.+.+...+.  .-+++++||
T Consensus       172 ~~~i~~ll~~l~~~~--g~tii~vTH  195 (239)
T d1v43a3         172 RVAMRAEIKKLQQKL--KVTTIYVTH  195 (239)
T ss_dssp             HHHHHHHHHHHHHHH--TCEEEEEES
T ss_pred             HHHHHHHHHHHHHhc--CCeEEEEeC
Confidence             45555566654332  467888888

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.39  E-value=1.4e-13  Score=97.66  Aligned_cols=46  Identities=26%  Similarity=0.371  Sum_probs=40.4

Q ss_pred             CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      |+..+.++++|+.+.|  ..++++||||||||||++.|+|...+.+|.
T Consensus        17 g~~~al~~vs~~i~~G--ei~~liGpnGaGKSTl~~~i~Gl~~p~~G~   62 (240)
T d1ji0a_          17 GAIHAIKGIDLKVPRG--QIVTLIGANGAGKTTTLSAIAGLVRAQKGK   62 (240)
T ss_dssp             TTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CCEEEEeeeeEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCccE
Confidence            3445678999999999  999999999999999999999998877664

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.39  E-value=4.8e-13  Score=94.49  Aligned_cols=137  Identities=12%  Similarity=0.068  Sum_probs=86.3

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEE--EEeCCcEEEEEeCCCCCCC
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT--VLKDGQVVNVIDTPGLFDF   83 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~iDtpG~~~~   83 (174)
                      .+.++++|+.+.|  ..++++|+||||||||++.|.|...+..|...............  ...+....++...|.+.+.
T Consensus        19 ~aL~~vsl~i~~G--e~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~   96 (242)
T d1oxxk2          19 VALDNVNINIENG--ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN   96 (242)
T ss_dssp             EEEEEEEEEECTT--CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred             EEEeceEEEECCC--CEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEecccccccc
Confidence            3478899999999  99999999999999999999999888777433222111110000  0102235677777877654


Q ss_pred             CCChHHH-----------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHH
Q 030624           84 SAGSEFV-----------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE  122 (174)
Q Consensus        84 ~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~  122 (174)
                      .+..+.+                                         .++-...+++...+++++++ ..++..+++..
T Consensus        97 ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llll-DEPt~~LD~~~  175 (242)
T d1oxxk2          97 LTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLL-DEPFSNLDARM  175 (242)
T ss_dssp             SCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE-ESTTTTSCGGG
T ss_pred             ccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceee-cCCccCCCHHH
Confidence            3322222                                         34444455555677786554 44454888887


Q ss_pred             -HHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624          123 -EAALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus       123 -~~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                       .+.++.|.+...+.  .-+++++||
T Consensus       176 ~~~i~~~i~~l~~~~--g~tvi~vTH  199 (242)
T d1oxxk2         176 RDSARALVKEVQSRL--GVTLLVVSH  199 (242)
T ss_dssp             HHHHHHHHHHHHHHH--CCEEEEEES
T ss_pred             HHHHHHHHHHHHhcc--CCEEEEEEC
Confidence             45556666654332  467888888

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.38  E-value=2.7e-12  Score=86.83  Aligned_cols=118  Identities=14%  Similarity=0.086  Sum_probs=69.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC   97 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~   97 (174)
                      .+..+|+++|++|||||||+++|++.......     ++.........+ ......++|+++.....           ..
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~   73 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTI-AGMTFTTFDLGGHIQAR-----------RV   73 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----C-----------CG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-----cccccceeEEEe-cccccccccccchhhhh-----------hH
Confidence            34479999999999999999999987643221     122222233344 56678889998877632           22


Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ........+.++++++..+....... ..+...... ......|++++.||.|+...
T Consensus        74 ~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~K~D~~~~  129 (186)
T d1f6ba_          74 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD-ETIANVPILILGNKIDRPEA  129 (186)
T ss_dssp             GGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTSCEEEEEECTTSTTC
T ss_pred             HhhhhcccceeeeeeeccCccchHHHHHHHHHhhcc-cccCCCceEEEEeccCcccc
Confidence            23456677999999998744333332 222111111 11233699999999998764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=4e-13  Score=95.10  Aligned_cols=137  Identities=13%  Similarity=0.071  Sum_probs=84.3

Q ss_pred             CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCC
Q 030624            3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   82 (174)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~   82 (174)
                      |...+.++++|+.+++  ..++++|+||||||||++.|+|...+..|........... ..... +....++.+.+++.+
T Consensus        13 g~~~vl~~vs~~v~~G--ei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~-~~~i~~vpq~~~~~~   88 (238)
T d1vpla_          13 GKKEILKGISFEIEEG--EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEV-RKLISYLPEEAGAYR   88 (238)
T ss_dssp             TTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHH-HTTEEEECTTCCCCT
T ss_pred             CCEEEEccceeEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHH-HhhEeEeeeccccCC
Confidence            4556788999999999  9999999999999999999999988776632211100000 00001 234456777777776


Q ss_pred             CCCChHHH-----------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHH
Q 030624           83 FSAGSEFV-----------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE  121 (174)
Q Consensus        83 ~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~  121 (174)
                      ..+..+.+                                         .++-...+++.+.++..++ +..++..+++.
T Consensus        89 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~ill-LDEPt~gLD~~  167 (238)
T d1vpla_          89 NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAI-LDEPTSGLDVL  167 (238)
T ss_dssp             TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEE-EESTTTTCCHH
T ss_pred             CccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEE-ecCCCCCCCHH
Confidence            54432222                                         1222233333456677554 44555588888


Q ss_pred             HH-HHHHHHHHHHhhhhcCcEEEEEeC
Q 030624          122 EE-AALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus       122 ~~-~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                      .+ .+.+.+.+. ..+  ..+++++||
T Consensus       168 ~~~~i~~~i~~~-~~~--g~tii~~tH  191 (238)
T d1vpla_         168 NAREVRKILKQA-SQE--GLTILVSSH  191 (238)
T ss_dssp             HHHHHHHHHHHH-HHT--TCEEEEEEC
T ss_pred             HHHHHHHHHHHH-Hhc--CCEEEEEeC
Confidence            74 445555554 333  367888888

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.36  E-value=4e-13  Score=94.20  Aligned_cols=133  Identities=17%  Similarity=0.126  Sum_probs=84.1

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCC
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG   86 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~   86 (174)
                      ..++++|+.+.+  ..++++|+||||||||++.|+|...+.+|.............   ..+....++...|.+.+..+.
T Consensus        15 aL~~vs~~i~~G--e~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~---~~~r~ig~v~Q~~~l~~~~tV   89 (229)
T d3d31a2          15 SLDNLSLKVESG--EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS---PEKHDIAFVYQNYSLFPHMNV   89 (229)
T ss_dssp             EEEEEEEEECTT--CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC---HHHHTCEEECTTCCCCTTSCH
T ss_pred             EEeeeEEEECCC--CEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccc---hhHhcceeeccccccCccccH
Confidence            468899999999  999999999999999999999998877663322111100000   001234566777777765443


Q ss_pred             hHHH--------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHHH-HHHH
Q 030624           87 SEFV--------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALH  127 (174)
Q Consensus        87 ~~~~--------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~l~  127 (174)
                      .+.+                                      .++-...+++...++.++++ ..++..+++..+ ++.+
T Consensus        90 ~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLll-DEPts~LD~~~~~~i~~  168 (229)
T d3d31a2          90 KKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLL-DEPLSALDPRTQENARE  168 (229)
T ss_dssp             HHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEE-ESSSTTSCHHHHHHHHH
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceee-cCCCcCCCHHHHHHHHH
Confidence            3322                                      34444555656777886655 444448888874 4555


Q ss_pred             HHHHHHhhhhcCcEEEEEeC
Q 030624          128 SLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus       128 ~l~~~~~~~~~~~~~iv~tk  147 (174)
                      .+.+...+.  .-+++++||
T Consensus       169 ~l~~l~~~~--g~tii~vtH  186 (229)
T d3d31a2         169 MLSVLHKKN--KLTVLHITH  186 (229)
T ss_dssp             HHHHHHHHT--TCEEEEEES
T ss_pred             HHHHHHhcC--CcEEEEEcC
Confidence            555543332  357888888

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=3.4e-12  Score=87.69  Aligned_cols=113  Identities=15%  Similarity=0.084  Sum_probs=73.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|.+|||||||++.+..    ...   ..+|.......+.. +...+.++|++|...           .+..+.
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f----~~~---~~pTiG~~~~~~~~-~~~~~~~~D~~gq~~-----------~~~~~~   62 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRI----IHG---QDPTKGIHEYDFEI-KNVPFKMVDVGGQRS-----------ERKRWF   62 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH----HHS---CCCCSSEEEEEEEE-TTEEEEEEEECC------------------CT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc----CCC---CCCeeeeEEEEEee-eeeeeeeecccceee-----------eccccc
Confidence            36899999999999999999831    111   12344444555555 778899999999886           555566


Q ss_pred             hccCCceEEEEEEeCCCCCCH--------HHHHHHHHHHHHHhhh--hcCcEEEEEeCcCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQ--------EEEAALHSLQTLFGKK--IFDYMIVVFTGGDEL  151 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~--------~~~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~  151 (174)
                      ..+..++.++++++.++....        ........+...+...  ...|++++.||+|+.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~  124 (200)
T d1zcba2          63 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL  124 (200)
T ss_dssp             TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             ccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhh
Confidence            678889999999998743221        1234444444443332  236999999999985

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.35  E-value=4e-12  Score=89.13  Aligned_cols=113  Identities=17%  Similarity=0.170  Sum_probs=79.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      .+|+++|..|||||||++.+.....        .+|.......+.. ++..+.++|+.|...           .+..+..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~~--------~pTiG~~~~~~~~-~~~~~~~~D~~Gq~~-----------~r~~w~~   66 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILHV--------VLTSGIFETKFQV-DKVNFHMFDVGGQRD-----------ERRKWIQ   66 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHC--------CCCCSCEEEEEEE-TTEEEEEEECCCSTT-----------TTTGGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCc--------CCCCCeEEEEEEE-CcEEEEEEecCccce-----------eccchhh
Confidence            7899999999999999999864321        1233233344445 778899999999887           4555667


Q ss_pred             ccCCceEEEEEEeCCCC--------CCHHHHHHHHHHHHHHhhhh--cCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRSR--------FSQEEEAALHSLQTLFGKKI--FDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~--------~~~~~~~~l~~l~~~~~~~~--~~~~~iv~tk~D~~~~  153 (174)
                      +...+++++++++.++.        -.....+.++.+...+..+.  ..|++|++||+|+.+.
T Consensus        67 ~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~  129 (221)
T d1azta2          67 CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE  129 (221)
T ss_dssp             GCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred             hcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhh
Confidence            88999999999998721        11223445555666555542  3589999999998653

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.32  E-value=2.1e-12  Score=89.23  Aligned_cols=134  Identities=9%  Similarity=0.044  Sum_probs=80.1

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCC
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS   84 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~   84 (174)
                      ..+.++++|+.+.|  ..++++|+||||||||++.|+|...+..|........      ....+...+++.+.+.+....
T Consensus        14 ~~vl~~is~~i~~G--ei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~------i~~~~~~i~~~~~~~~~~~~~   85 (200)
T d1sgwa_          14 KPVLERITMTIEKG--NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVP------ITKVKGKIFFLPEEIIVPRKI   85 (200)
T ss_dssp             SEEEEEEEEEEETT--CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE------GGGGGGGEEEECSSCCCCTTS
T ss_pred             CeEEeceEEEEcCC--CEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEe------hhHhcCcEEEEeecccCCCCc
Confidence            35778999999999  9999999999999999999999988777643221100      000022233444444433322


Q ss_pred             CChHHH--------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHHH-HH
Q 030624           85 AGSEFV--------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE-AA  125 (174)
Q Consensus        85 ~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~  125 (174)
                      +..+.+                                      .++-...++..+.+++++++- .++..++...+ .+
T Consensus        86 t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllD-EPt~gLD~~~~~~i  164 (200)
T d1sgwa_          86 SVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLD-DPVVAIDEDSKHKV  164 (200)
T ss_dssp             BHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE-STTTTSCTTTHHHH
T ss_pred             CHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEc-CcccccCHHHHHHH
Confidence            111111                                      233334444456677766553 34447888775 56


Q ss_pred             HHHHHHHHhhhhcCcEEEEEeCcCC
Q 030624          126 LHSLQTLFGKKIFDYMIVVFTGGDE  150 (174)
Q Consensus       126 l~~l~~~~~~~~~~~~~iv~tk~D~  150 (174)
                      ++.+.+...+.   .++++.++-|.
T Consensus       165 ~~~l~~~~~~~---~~~ii~~~~~l  186 (200)
T d1sgwa_         165 LKSILEILKEK---GIVIISSREEL  186 (200)
T ss_dssp             HHHHHHHHHHH---SEEEEEESSCC
T ss_pred             HHHHHHHHhCC---CEEEEEEechh
Confidence            67777765433   45666666454

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.31  E-value=8.1e-13  Score=92.79  Aligned_cols=42  Identities=21%  Similarity=0.148  Sum_probs=37.9

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      +.++++|+.+.|  ..++++|++|||||||++.|.|...+.+|.
T Consensus        20 al~~isl~i~~G--e~~~iiG~sGsGKSTLl~~i~gl~~p~sG~   61 (230)
T d1l2ta_          20 ALKNVNLNIKEG--EFVSIMGPSGSGKSTMLNIIGCLDKPTEGE   61 (230)
T ss_dssp             EEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             EEeceEEEEcCC--CEEEEECCCCCCcchhhHhccCCCCCCcce
Confidence            468899999999  999999999999999999999998776663

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.30  E-value=5.1e-13  Score=94.81  Aligned_cols=43  Identities=19%  Similarity=0.189  Sum_probs=39.2

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++|+.+.+  .+++++|++|||||||++.|+|...+..|.
T Consensus        16 ~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p~~G~   58 (242)
T d1mv5a_          16 QILRDISFEAQPN--SIIAFAGPSGGGKSTIFSLLERFYQPTAGE   58 (242)
T ss_dssp             CSEEEEEEEECTT--EEEEEECCTTSSHHHHHHHHTTSSCCSBSC
T ss_pred             ceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHHhhCCCCCE
Confidence            4788999999999  999999999999999999999998777664

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.29  E-value=4.1e-13  Score=96.05  Aligned_cols=46  Identities=22%  Similarity=0.249  Sum_probs=40.4

Q ss_pred             CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      |+..+.++++|+.+.|  ..++++|+||||||||++.|+|...+..|.
T Consensus        15 g~~~aL~~vs~~v~~G--ei~~liG~nGaGKSTLl~~i~Gl~~p~~G~   60 (254)
T d1g6ha_          15 GEFKALDGVSISVNKG--DVTLIIGPNGSGKSTLINVITGFLKADEGR   60 (254)
T ss_dssp             TTEEEEEEECCEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CCeEEEcceEEEECCC--CEEEEECCCCCcHHHHHHHHHCCCcCCCcE
Confidence            3445678999999999  999999999999999999999998877663

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.7e-13  Score=94.07  Aligned_cols=42  Identities=19%  Similarity=0.215  Sum_probs=38.4

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      +.++++|+.+.+  ..++++|+||||||||++.|+|...+..|.
T Consensus        29 vL~~isl~i~~G--e~vaivG~sGsGKSTLl~li~gl~~p~~G~   70 (251)
T d1jj7a_          29 VLQGLTFTLRPG--EVTALVGPNGSGKSTVAALLQNLYQPTGGQ   70 (251)
T ss_dssp             SEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             eEeceEEEEcCC--CEEEEECCCCCcHHHHHHHHhcccCCCcCE
Confidence            678999999999  999999999999999999999998876663

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=7.8e-13  Score=93.69  Aligned_cols=42  Identities=26%  Similarity=0.303  Sum_probs=38.2

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      +.++++|+++.+  .+++|+|++|||||||++.|+|...+..|.
T Consensus        18 vL~~isl~i~~G--e~vaIvG~sGsGKSTLl~ll~gl~~p~~G~   59 (241)
T d2pmka1          18 ILDNINLSIKQG--EVIGIVGRSGSGKSTLTKLIQRFYIPENGQ   59 (241)
T ss_dssp             EEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             eEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhcCCCCCCE
Confidence            678999999999  999999999999999999999998776653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=3.2e-11  Score=82.49  Aligned_cols=114  Identities=13%  Similarity=0.069  Sum_probs=78.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+|+++|..|||||||++.+.... +.     ..+|.......... ....+.++|++|...           .+..+.
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~-~~-----~~pTiG~~~~~~~~-~~~~~~~~d~~g~~~-----------~~~~~~   63 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIH-GS-----GVPTTGIIEYPFDL-QSVIFRMVDVGGQRS-----------ERRKWI   63 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHT-SS-----CCCCCSCEEEEEEC-SSCEEEEEECCCSTT-----------GGGGGG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC-CC-----CCceeeEEEEEEec-cceeeeecccccccc-----------cccccc
Confidence            4789999999999999999997654 21     12344344444444 677899999999987           556666


Q ss_pred             hccCCceEEEEEEeCCCCCC--------HHHHHHHHHHHHHHhhh--hcCcEEEEEeCcCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFS--------QEEEAALHSLQTLFGKK--IFDYMIVVFTGGDEL  151 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~--------~~~~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~  151 (174)
                      ..+..++.++++++.++...        ....+.++.+...+..+  ...|++++.||.|+.
T Consensus        64 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~  125 (200)
T d2bcjq2          64 HCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL  125 (200)
T ss_dssp             GGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHH
T ss_pred             ccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhh
Confidence            78889999999999863211        12233344444443332  236899999999975

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=1.2e-12  Score=92.40  Aligned_cols=136  Identities=14%  Similarity=0.093  Sum_probs=81.1

Q ss_pred             cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE--eCCcEEEEEeCCCCCCCC
Q 030624            7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFS   84 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~iDtpG~~~~~   84 (174)
                      +.++++|+.+.|  ..++++|+||||||||++.|.|...+.+|.................  .+....++...|++....
T Consensus        20 al~~vsl~i~~G--e~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~   97 (240)
T d3dhwc1          20 ALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR   97 (240)
T ss_dssp             EEEEEEEEECSS--CEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTS
T ss_pred             EeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCc
Confidence            478899999999  9999999999999999999999987766643221110000000000  001234555566655543


Q ss_pred             CChHHH-----------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHH-
Q 030624           85 AGSEFV-----------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-  122 (174)
Q Consensus        85 ~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-  122 (174)
                      +..+.+                                         .++-...+++...+|+++++ ..++..+++.. 
T Consensus        98 tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLll-DEPt~~LD~~~~  176 (240)
T d3dhwc1          98 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLC-DEATSALDPATT  176 (240)
T ss_dssp             BHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEE-ESGGGSSCHHHH
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEe-ccccccCCHHHh
Confidence            322211                                         23333444444667776554 33444888887 


Q ss_pred             HHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624          123 EAALHSLQTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus       123 ~~~l~~l~~~~~~~~~~~~~iv~tk  147 (174)
                      .++++.|.+...+.  .-+++++||
T Consensus       177 ~~i~~~l~~l~~~~--g~tvi~vTH  199 (240)
T d3dhwc1         177 RSILELLKDINRRL--GLTILLITH  199 (240)
T ss_dssp             HHHHHHHHHHHHHH--CCEEEEEBS
T ss_pred             hHHHHHHHHHHhcc--CCEEEEEcC
Confidence            56666666664332  467888888

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=1.7e-11  Score=83.60  Aligned_cols=111  Identities=13%  Similarity=0.108  Sum_probs=75.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG   99 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~   99 (174)
                      ..+++++|..|+|||||++.+.....+..+         ........ ....+.++||.|...           +...+.
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~---------~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~~~   60 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTG---------IVETHFTF-KDLHFKMFDVGGQRS-----------ERKKWI   60 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCCS---------EEEEEEEE-TTEEEEEEEECCSGG-----------GGGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCcc---------EEEEEEEe-eeeeeeeeccccccc-----------cccchh
Confidence            478999999999999999998754432211         12233444 677899999999887           566667


Q ss_pred             hccCCceEEEEEEeCCCCCCH--------HHHHHHHHHHHHHhhh--hcCcEEEEEeCcCCC
Q 030624          100 MAKDGIHAVLVVFSVRSRFSQ--------EEEAALHSLQTLFGKK--IFDYMIVVFTGGDEL  151 (174)
Q Consensus       100 ~~~~~~~~il~v~~~~~~~~~--------~~~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~  151 (174)
                      .++..+++++++++.++....        ...+....+.......  ...|+++++||+|..
T Consensus        61 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~  122 (195)
T d1svsa1          61 HCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF  122 (195)
T ss_dssp             GGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred             hcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhh
Confidence            789999999999987632211        1223333333332221  225899999999863

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.25  E-value=5e-12  Score=90.33  Aligned_cols=46  Identities=22%  Similarity=0.270  Sum_probs=40.5

Q ss_pred             CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      |+..+.++++|+.+.+  ..++++|++|||||||+++|+|...+.+|.
T Consensus        13 g~~~al~~vs~~i~~G--Ei~~iiG~sGsGKSTLl~~i~Gl~~p~~G~   58 (258)
T d1b0ua_          13 GGHEVLKGVSLQARAG--DVISIIGSSGSGKSTFLRCINFLEKPSEGA   58 (258)
T ss_dssp             TTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             CCEEEEcceeeEEcCC--CEEEEECCCCCcHHHHHHHHHcCccCCCCC
Confidence            3455678999999999  999999999999999999999998776664

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.23  E-value=7.5e-12  Score=91.42  Aligned_cols=92  Identities=17%  Similarity=0.125  Sum_probs=67.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC----------------cEEEEEeCCCCCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFD   82 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~~iDtpG~~~   82 (174)
                      ...+|+++|.++||||||+|+|++...+..+ ..+.+|...+...+..++.                ..+.++|.||+..
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~a-nypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPA-NYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTT-CCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcC-CCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            3478999999999999999999976543222 3455565555554444221                2578999999999


Q ss_pred             CCCChHHHHHHHHHHHHhccCCceEEEEEEeCC
Q 030624           83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  115 (174)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  115 (174)
                      +.....-++.++...++.+    |+++.|+++.
T Consensus        88 gA~~g~GLGn~fL~~ir~~----d~lihVV~~f  116 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAV----DAIYQVVRAF  116 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTC----SEEEEEEECC
T ss_pred             ccccccccHHHHHHHhhcc----ceeEEEEecc
Confidence            8777777777788776655    9999999874

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.23  E-value=2.4e-12  Score=91.83  Aligned_cols=43  Identities=30%  Similarity=0.404  Sum_probs=38.6

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++|+++.+  ..++|+|++|||||||++.|+|...+..|.
T Consensus        29 ~~L~~isl~i~~G--e~iaivG~sGsGKSTLl~ll~gl~~p~~G~   71 (253)
T d3b60a1          29 PALRNINLKIPAG--KTVALVGRSGSGKSTIASLITRFYDIDEGH   71 (253)
T ss_dssp             CSEEEEEEEECTT--CEEEEEECTTSSHHHHHHHHTTTTCCSEEE
T ss_pred             ceeeceEEEEcCC--CEEEEECCCCChHHHHHHHHhcccCCCccE
Confidence            3678999999999  999999999999999999999998776663

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.20  E-value=7e-12  Score=88.26  Aligned_cols=129  Identities=16%  Similarity=0.046  Sum_probs=72.9

Q ss_pred             ccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHH
Q 030624           10 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF   89 (174)
Q Consensus        10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~   89 (174)
                      +++|+...   ..++++||||||||||++.|+|...+..|.............   ..+....++..-|.+.+..+..+.
T Consensus        17 ~vs~~~~~---e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~---~~~r~ig~v~Q~~~l~~~ltV~en   90 (240)
T d2onka1          17 NVDFEMGR---DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP---PERRGIGFVPQDYALFPHLSVYRN   90 (240)
T ss_dssp             EEEEEECS---SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC---TTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred             EEEEEeCC---EEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCC---HHHcCceeeccchhhcccchhhHh
Confidence            56666642   478899999999999999999998877764322111111000   001123344444555543321111


Q ss_pred             H---------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHH
Q 030624           90 V---------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSL  129 (174)
Q Consensus        90 ~---------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l  129 (174)
                      +                                       .++....+++...+|+++++ ..++..+++.. ....+.+
T Consensus        91 l~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illl-DEPts~LD~~~~~~i~~~i  169 (240)
T d2onka1          91 IAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLL-DEPLSAVDLKTKGVLMEEL  169 (240)
T ss_dssp             HHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEE-ESTTSSCCHHHHHHHHHHH
T ss_pred             hhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEe-cCccccCCHHHHHHHHHHH
Confidence            1                                       34444455555677775554 44444888887 4555555


Q ss_pred             HHHHhhhhcCcEEEEEeC
Q 030624          130 QTLFGKKIFDYMIVVFTG  147 (174)
Q Consensus       130 ~~~~~~~~~~~~~iv~tk  147 (174)
                      ++...+.  .-+++++||
T Consensus       170 ~~l~~~~--g~tvi~vtH  185 (240)
T d2onka1         170 RFVQREF--DVPILHVTH  185 (240)
T ss_dssp             HHHHHHH--TCCEEEEES
T ss_pred             HHHHHhc--CCeEEEEeC
Confidence            5554332  356777788

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.20  E-value=4.1e-12  Score=90.60  Aligned_cols=43  Identities=33%  Similarity=0.301  Sum_probs=38.9

Q ss_pred             CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      .+.++++|+++.+  .+++|+|++|||||||++.|+|...+..|.
T Consensus        32 ~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p~~G~   74 (255)
T d2hyda1          32 PILKDINLSIEKG--ETVAFVGMSGGGKSTLINLIPRFYDVTSGQ   74 (255)
T ss_dssp             CSEEEEEEEECTT--CEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred             cceeceEEEEcCC--CEEEEECCCCCcHHHHHHHHHhcCCccccc
Confidence            3688999999999  999999999999999999999998876663

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.17  E-value=8.4e-12  Score=92.00  Aligned_cols=89  Identities=16%  Similarity=0.033  Sum_probs=43.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEE--------------------E---eCCcEEEEEeC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV--------------------L---KDGQVVNVIDT   77 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~--------------------~---~~~~~~~~iDt   77 (174)
                      .+|+++|.+++|||||+|+|++.... .+ ..+.+|...+.....                    +   .....+.++|+
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~-v~-nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~   78 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVE-IA-NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCc-hh-cCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEEC
Confidence            36999999999999999999997642 22 223333332221110                    0   01135889999


Q ss_pred             CCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCC
Q 030624           78 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR  115 (174)
Q Consensus        78 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~  115 (174)
                      ||+..+......+...    .......+|+++.|+|+.
T Consensus        79 pGli~ga~~g~~~~~~----~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          79 AGLVPGAHEGRGLGNK----FLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             C-------------------CCCSSTTCSEEEEEEETT
T ss_pred             CCcccchhcccchHHH----HHHhhccceEEEEEeccc
Confidence            9998754333333322    233456789999999985

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.14  E-value=1e-11  Score=89.91  Aligned_cols=88  Identities=18%  Similarity=0.120  Sum_probs=61.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC----------------cEEEEEeCCCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFS   84 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~~iDtpG~~~~~   84 (174)
                      .+|++||-++||||||+|+|++..+. .+ ..+.+|...+...+..++.                -.+.++|.||+..+.
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~-~~-~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIE-AA-NYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCc-cc-cCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            68999999999999999999987642 21 3344555555554443221                136799999999865


Q ss_pred             CChHHHHHHHHHHHHhccCCceEEEEEEeC
Q 030624           85 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSV  114 (174)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~  114 (174)
                      ....-++.++++.++.+    |+++.|+++
T Consensus        81 ~~g~Glg~~FL~~ir~~----d~LihVVr~  106 (278)
T d1jala1          81 SKGEGLGNKFLANIRET----DAIGHVVRC  106 (278)
T ss_dssp             HHHGGGTCCHHHHHHTC----SEEEEEEEC
T ss_pred             ccCCCccHHHHHHHHhc----cceEEEeec
Confidence            54455566677777766    999999986

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1.8e-10  Score=83.12  Aligned_cols=44  Identities=20%  Similarity=0.283  Sum_probs=39.2

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA   50 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~   50 (174)
                      ..+.++++|+++.|  ..++|+|+||||||||++.|+|...+..|.
T Consensus        49 ~pvL~~isl~i~~G--e~vaivG~nGsGKSTLl~~i~Gl~~p~~G~   92 (281)
T d1r0wa_          49 NPVLKNINLNIEKG--EMLAITGSTGSGKTSLLMLILGELEASEGI   92 (281)
T ss_dssp             CEEEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             CeEEeCeEEEEcCC--CEEEEECCCCChHHHHHHHHhCCCcCCCcE
Confidence            45778999999999  999999999999999999999988776653

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.07  E-value=5.9e-11  Score=82.68  Aligned_cols=63  Identities=25%  Similarity=0.288  Sum_probs=38.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCC----CCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      .+.+++|++|+|||||+|+|.+......+...    .+.-+.+...-+.+  .....++||||+.+...
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l--~~gg~iiDTPG~r~~~l  162 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKF--DFGGYVVDTPGFANLEI  162 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEEC--TTSCEEESSCSSTTCCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEE--CCCcEEEeCCccccccc
Confidence            68899999999999999999986544343221    11111122222222  33468999999987553

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.05  E-value=4.3e-10  Score=80.98  Aligned_cols=68  Identities=22%  Similarity=0.327  Sum_probs=43.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHH
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFV   90 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~   90 (174)
                      ....+++++|.+++|||||+|+|.+......+ ..++.|....  .+.  .+..++++||||+..+.......
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~-~~pG~Tr~~~--~i~--~~~~~~l~DTPGi~~p~~~~~~~  177 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQ--WVK--VGKELELLDTPGILWPKFEDELV  177 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------C--CEE--ETTTEEEEECCCCCCSCCCCHHH
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEEC-Ccccccccce--EEE--CCCCeEEecCCCccccCCccHHH
Confidence            34588999999999999999999998765454 3344554332  222  35679999999998766554433

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.98  E-value=2.2e-09  Score=75.34  Aligned_cols=78  Identities=15%  Similarity=0.089  Sum_probs=45.5

Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcC
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  149 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D  149 (174)
                      ..+.++|+||+.+.     .........+. .....+.+++++|+.....+...................|.++++||+|
T Consensus        95 ~~~~~id~~g~~~~-----~~~~~~~~~~~-~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D  168 (244)
T d1yrba1          95 NDYVLIDTPGQMET-----FLFHEFGVRLM-ENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVD  168 (244)
T ss_dssp             CSEEEEECCSSHHH-----HHHSHHHHHHH-HTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGG
T ss_pred             cceeeeccccchhH-----HHHHHHHHHHH-hhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccc
Confidence            45889999998852     11111111111 1234578888999875555555433333332222233368899999999


Q ss_pred             CCCC
Q 030624          150 ELED  153 (174)
Q Consensus       150 ~~~~  153 (174)
                      +...
T Consensus       169 ~~~~  172 (244)
T d1yrba1         169 LLSE  172 (244)
T ss_dssp             GCCH
T ss_pred             cccH
Confidence            9875

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.97  E-value=3.7e-10  Score=78.20  Aligned_cols=131  Identities=18%  Similarity=0.207  Sum_probs=70.8

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceee------------------EEEEEE---------
Q 030624           13 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC------------------EMQRTV---------   65 (174)
Q Consensus        13 ~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~------------------~~~~~~---------   65 (174)
                      +..++.++..++++|++|+||||++-.|+.... ..+....-.+.++                  .+....         
T Consensus         4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~   82 (213)
T d1vmaa2           4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVA   82 (213)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHH
T ss_pred             CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHH
Confidence            445666678999999999999999766653221 1111100000000                  000000         


Q ss_pred             -------EeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc----CCceEEEEEEeCCCCCCHHHHHHHHHHHHHHh
Q 030624           66 -------LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK----DGIHAVLVVFSVRSRFSQEEEAALHSLQTLFG  134 (174)
Q Consensus        66 -------~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~  134 (174)
                             ..++..+.+|||||....   ....+.++........    ..++.+++|+++...  ..+...   +...+.
T Consensus        83 ~~~~~~~~~~~~d~ilIDTaGr~~~---d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~---~~~~~~  154 (213)
T d1vmaa2          83 FDAVAHALARNKDVVIIDTAGRLHT---KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ---AKIFKE  154 (213)
T ss_dssp             HHHHHHHHHTTCSEEEEEECCCCSC---HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH---HHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEeccccccc---hHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhh---hhhhcc
Confidence                   002345799999998763   3455555555544322    236778889988622  222222   222221


Q ss_pred             hhhcCcEEEEEeCcCCCCCC
Q 030624          135 KKIFDYMIVVFTGGDELEDN  154 (174)
Q Consensus       135 ~~~~~~~~iv~tk~D~~~~~  154 (174)
                      .-  ...-+++||.|....-
T Consensus       155 ~~--~~~~lI~TKlDe~~~~  172 (213)
T d1vmaa2         155 AV--NVTGIILTKLDGTAKG  172 (213)
T ss_dssp             HS--CCCEEEEECGGGCSCT
T ss_pred             cc--CCceEEEecccCCCcc
Confidence            11  3566888999997543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.95  E-value=1.3e-10  Score=81.13  Aligned_cols=61  Identities=28%  Similarity=0.318  Sum_probs=34.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCC----CC-cceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SG-VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA   85 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~----~~-~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~   85 (174)
                      .+.+++|++|+|||||+|+|++......+...    .+ .|+... .-+.. .  ...++||||+.+...
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~-~l~~~-~--gg~iiDTPG~r~~~l  163 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHT-S--GGLVADTPGFSSLEF  163 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEE-T--TEEEESSCSCSSCCC
T ss_pred             ceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeE-EEEec-C--CCEEEECCccccccc
Confidence            67789999999999999999987544443221    11 222221 11222 2  367999999987654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.93  E-value=1.2e-09  Score=75.20  Aligned_cols=75  Identities=16%  Similarity=0.097  Sum_probs=44.3

Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHh----ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEE
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM----AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  145 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~  145 (174)
                      ..+.+|||||.....   .....++......    ....++-+++|++++... ....+... ..+.+     ...-+++
T Consensus        89 ~d~ilIDTaGr~~~d---~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~-~~~~~~~~-~~~~~-----~~~~lI~  158 (207)
T d1okkd2          89 YDLLFVDTAGRLHTK---HNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ-NGLEQAKK-FHEAV-----GLTGVIV  158 (207)
T ss_dssp             CSEEEECCCCCCTTC---HHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT-HHHHHHHH-HHHHH-----CCSEEEE
T ss_pred             CCEEEcCccccchhh---HHHHHHHHHHHHHhhhcccCCCceEEEEeecccCc-hHHHHHHH-hhhcc-----CCceEEE
Confidence            457999999987643   4444444433322    234667888899887332 22233332 22222     3557788


Q ss_pred             eCcCCCCCC
Q 030624          146 TGGDELEDN  154 (174)
Q Consensus       146 tk~D~~~~~  154 (174)
                      ||.|....-
T Consensus       159 TKlDet~~~  167 (207)
T d1okkd2         159 TKLDGTAKG  167 (207)
T ss_dssp             ECTTSSCCC
T ss_pred             eccCCCCCc
Confidence            999997654

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=3.4e-10  Score=79.53  Aligned_cols=39  Identities=23%  Similarity=0.202  Sum_probs=34.8

Q ss_pred             CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624            5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA   45 (174)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~   45 (174)
                      +....+++|+.+.|  ..++++|+||||||||++.|+|..+
T Consensus        12 ~~~l~~isl~I~~G--ei~~iiG~nGaGKSTLl~~l~Gl~~   50 (231)
T d1l7vc_          12 STRLGPLSGEVRAG--EILHLVGPNGAGKSTLLARMAGMTS   50 (231)
T ss_dssp             TTTSCSEEEEEETT--CEEECBCCTTSSHHHHHHHHHTSCC
T ss_pred             CceecCEEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            44567889999999  9999999999999999999999764

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.87  E-value=3e-09  Score=73.44  Aligned_cols=75  Identities=11%  Similarity=0.064  Sum_probs=42.6

Q ss_pred             CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCc
Q 030624           69 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG  148 (174)
Q Consensus        69 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~  148 (174)
                      +..+.+|||||..... .......++.......  .++-+++|++++...+  ............     ...-+++||.
T Consensus        94 ~~d~IlIDTaGr~~~~-~~~~~~~el~~~~~~~--~~~~~~LVl~a~~~~~--~~~~~~~~~~~~-----~~~~lI~TKl  163 (211)
T d1j8yf2          94 KMEIIIVDTAGRHGYG-EEAALLEEMKNIYEAI--KPDEVTLVIDASIGQK--AYDLASKFNQAS-----KIGTIIITKM  163 (211)
T ss_dssp             TCSEEEEECCCSCCTT-CHHHHHHHHHHHHHHH--CCSEEEEEEEGGGGGG--HHHHHHHHHHHC-----TTEEEEEECT
T ss_pred             CCceEEEecCCcCccc-hhhHHHHHHHHHHhhc--CCceEEEEEecccCcc--hHHHHhhhhccc-----CcceEEEecc
Confidence            3468999999986522 2233344554444432  3567888888874432  222222222222     3445779999


Q ss_pred             CCCCC
Q 030624          149 DELED  153 (174)
Q Consensus       149 D~~~~  153 (174)
                      |....
T Consensus       164 Det~~  168 (211)
T d1j8yf2         164 DGTAK  168 (211)
T ss_dssp             TSCSC
T ss_pred             cCCCc
Confidence            99765

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=3.9e-09  Score=72.76  Aligned_cols=75  Identities=15%  Similarity=0.164  Sum_probs=43.2

Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc----cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEE
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA----KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF  145 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~  145 (174)
                      ..+.+|||||....   ......++.+.....    ...++-+++|+++...  ..+........+..     ...-+++
T Consensus        92 ~d~ilIDTaGr~~~---d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-----~~~~lIl  161 (211)
T d2qy9a2          92 IDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAV-----GLTGITL  161 (211)
T ss_dssp             CSEEEECCCCCGGG---HHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT--HHHHHHHHHHHHHS-----CCCEEEE
T ss_pred             CCEEEeccCCCccc---cHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC--cchHHHHhhhhhcc-----CCceEEE
Confidence            35789999998752   344555555444332    1235778889888622  22222222222222     3556888


Q ss_pred             eCcCCCCCC
Q 030624          146 TGGDELEDN  154 (174)
Q Consensus       146 tk~D~~~~~  154 (174)
                      ||.|....-
T Consensus       162 TKlDe~~~~  170 (211)
T d2qy9a2         162 TKLDGTAKG  170 (211)
T ss_dssp             ECCTTCTTT
T ss_pred             eecCCCCCc
Confidence            999997654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.76  E-value=8.4e-09  Score=70.99  Aligned_cols=72  Identities=19%  Similarity=0.201  Sum_probs=46.0

Q ss_pred             cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcC
Q 030624           70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD  149 (174)
Q Consensus        70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D  149 (174)
                      ..+.+|||||....   ......++.......  .++-+++|+++..+  .........+.+.+     ...-+++||.|
T Consensus        93 ~d~vlIDTaGr~~~---d~~~~~el~~~~~~~--~~~~~llv~~a~~~--~~~~~~~~~f~~~~-----~~~~~I~TKlD  160 (207)
T d1ls1a2          93 RDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKV-----GVTGLVLTKLD  160 (207)
T ss_dssp             CCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HHHHHHHHHHHHHT-----CCCEEEEECGG
T ss_pred             Ccceeecccccchh---hhhhHHHHHHHHhhc--CCceEEEEeccccc--hhHHHHHHHHHhhC-----CCCeeEEeecC
Confidence            45789999998863   355666666665533  45778888887633  33334444443433     34458889999


Q ss_pred             CCCC
Q 030624          150 ELED  153 (174)
Q Consensus       150 ~~~~  153 (174)
                      ....
T Consensus       161 e~~~  164 (207)
T d1ls1a2         161 GDAR  164 (207)
T ss_dssp             GCSS
T ss_pred             cccc
Confidence            8654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.67  E-value=5.6e-08  Score=64.76  Aligned_cols=28  Identities=21%  Similarity=0.425  Sum_probs=24.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccccc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKS   48 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~   48 (174)
                      .+|+++|++|+|||||++.|++...+..
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~~   28 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGKRA   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCCCc
Confidence            3799999999999999999998765543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=3.4e-07  Score=67.10  Aligned_cols=26  Identities=19%  Similarity=0.164  Sum_probs=23.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624           17 SNGERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        17 ~~~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      .++..+|+|+|++|||||||++.|..
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHH
Confidence            45679999999999999999999974

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=1.3e-06  Score=60.46  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      -+..+|.|.-|||||||+|.++..
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhc
Confidence            467899999999999999999875

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=3.8e-06  Score=59.98  Aligned_cols=66  Identities=27%  Similarity=0.306  Sum_probs=45.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc-ccccccCCCCcceeeEEEEEEE--eCCcEEEEEeCCCCCCC
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDF   83 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~iDtpG~~~~   83 (174)
                      ++-..|+++|+.++|||+|+|.|++.. .+..+.....+|...-......  ..+..+.++||.|+.+.
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~   98 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV   98 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccc
Confidence            344689999999999999999999865 2344444445555443333222  13457899999999874

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=1.8e-06  Score=56.61  Aligned_cols=22  Identities=14%  Similarity=0.311  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      +.++|+|++|||||||++.|+.
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            5789999999999999999975

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.94  E-value=2.4e-07  Score=63.24  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..|+++|.+||||||+.+.|+..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~   25 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRY   25 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999853

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.94  E-value=2.1e-06  Score=56.88  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ++|+|+|++|+|||||.+.|....
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            789999999999999999998643

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.73  E-value=1e-05  Score=53.00  Aligned_cols=24  Identities=21%  Similarity=0.475  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..+|+++|++||||||+.+.|...
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHH
Confidence            489999999999999999999764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.72  E-value=9.9e-06  Score=53.06  Aligned_cols=23  Identities=17%  Similarity=0.202  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      +.++|+|.+|||||||++.|+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            57899999999999999988653

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.71  E-value=1.2e-05  Score=51.67  Aligned_cols=22  Identities=23%  Similarity=0.534  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+++|++||||||+.+.|..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999998864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.70  E-value=1.3e-05  Score=53.47  Aligned_cols=28  Identities=18%  Similarity=0.271  Sum_probs=23.0

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      .+......|+|.|++|||||||.+.|..
T Consensus        17 ~~~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          17 IKTAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3444557899999999999999999864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.70  E-value=8.5e-06  Score=53.28  Aligned_cols=23  Identities=26%  Similarity=0.614  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ++|+++|++||||||+.+.|...
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            67899999999999999999753

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.64  E-value=1.8e-05  Score=57.65  Aligned_cols=27  Identities=26%  Similarity=0.283  Sum_probs=23.4

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624           16 PSNGERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        16 ~~~~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..++..+|+|+|++|||||||++.|..
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHH
Confidence            345569999999999999999999874

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.61  E-value=2e-05  Score=52.67  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      .+|+++|++||||||..+.|+.
T Consensus         4 ~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           4 VRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999874

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.61  E-value=2.2e-05  Score=52.62  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ++..|+++|++||||||+.+.|+..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4478999999999999999998754

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.61  E-value=1.8e-05  Score=51.53  Aligned_cols=23  Identities=26%  Similarity=0.497  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      +.|+++|++||||||+.+.|...
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999864

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=1.5e-05  Score=52.48  Aligned_cols=24  Identities=29%  Similarity=0.302  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      +.|.|+|++|+|||||+..+....
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            568999999999999999987543

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=1.4e-05  Score=54.42  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..++|+||+|||||||++.|+...
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            678999999999999999998754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=9.6e-06  Score=54.04  Aligned_cols=24  Identities=29%  Similarity=0.639  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      +.|+|+||+|+|||||++.|+...
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            458899999999999999998654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.58  E-value=2.3e-05  Score=51.20  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      .+.|+|.|++||||||+.+.|....
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            4678899999999999999988753

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.56  E-value=2.3e-05  Score=52.14  Aligned_cols=24  Identities=38%  Similarity=0.443  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..|+++||+||||||+++.|....
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            678999999999999999997653

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.54  E-value=3.4e-05  Score=50.46  Aligned_cols=25  Identities=24%  Similarity=0.450  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ...|++.|++||||||+.+.|....
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3779999999999999999998653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.54  E-value=1.4e-05  Score=56.83  Aligned_cols=49  Identities=14%  Similarity=0.116  Sum_probs=37.7

Q ss_pred             HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624           98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus        98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      +......+|+|++|+|+..+++..+....+.++       .+|.++|+||+|+...
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~-------~Kp~IlVlNK~DLv~~   57 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRNPMIEDILK-------NKPRIMLLNKADKADA   57 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS-------SSCEEEEEECGGGSCH
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHc-------CCCeEEEEECccCCch
Confidence            334556679999999998888888766554443       2689999999999876

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=0.0001  Score=52.11  Aligned_cols=100  Identities=15%  Similarity=0.169  Sum_probs=55.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      ..++++|++|+|||+++..+.....  .+..+..            ..+..++-+|...+..+......+...+...+..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri~--~~~vp~~------------l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~  105 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRIV--QGDVPEV------------MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQ  105 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH--HTCSCGG------------GTTCEEEECCCC---CCCCCSSCHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHHH--hCCcccc------------cccceeEEeeechHhccCccchhHHHHHHHHHHH
Confidence            5789999999999999999886542  1111000            0344556677777776555555555555555554


Q ss_pred             ccCCceEEEEEEeCCCCC-----CHHHHHHHHHHHHHHh
Q 030624          101 AKDGIHAVLVVFSVRSRF-----SQEEEAALHSLQTLFG  134 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~~~-----~~~~~~~l~~l~~~~~  134 (174)
                      ....-++++|+-+...-+     +.......+.|+..+.
T Consensus       106 ~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~  144 (268)
T d1r6bx2         106 LEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS  144 (268)
T ss_dssp             HSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS
T ss_pred             hhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHh
Confidence            444445555554444111     1223455555666554

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.53  E-value=2.6e-05  Score=51.46  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      +.|+|.|++||||||+.+.|..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.53  E-value=3e-05  Score=52.00  Aligned_cols=26  Identities=19%  Similarity=0.332  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ++..+|+++|++||||||+.+.|+..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHH
Confidence            45589999999999999999998764

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.53  E-value=3e-05  Score=50.77  Aligned_cols=24  Identities=25%  Similarity=0.320  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ...|.++|.+||||||+.+.|...
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            388999999999999999998754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=3.1e-05  Score=50.50  Aligned_cols=24  Identities=33%  Similarity=0.555  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ...++++|++||||||+.+.|...
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            367888999999999999998764

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.52  E-value=2.2e-05  Score=52.48  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      +.+|+|+|++||||||+.+.|....
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999987543

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=2.3e-05  Score=50.50  Aligned_cols=23  Identities=39%  Similarity=0.702  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      +.|.++|++||||||+.+.|...
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999998764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=0.00021  Score=50.10  Aligned_cols=23  Identities=35%  Similarity=0.680  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      +-+++.||+|+|||+++++|+..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            56899999999999999999864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.50  E-value=2.9e-05  Score=51.28  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .+|+|+|++||||||+.+.|+..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999998653

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=4.4e-05  Score=51.22  Aligned_cols=27  Identities=15%  Similarity=0.361  Sum_probs=22.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      .+..+|+|+|++||||||+...|+...
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            345889999999999999999987643

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.49  E-value=2.5e-05  Score=51.11  Aligned_cols=23  Identities=39%  Similarity=0.590  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ++|+++|++||||||+.+.|...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            57889999999999999988643

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=3.4e-05  Score=51.55  Aligned_cols=23  Identities=26%  Similarity=0.499  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Q 030624           22 TVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      -|+|+||+|||||||++.|+...
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHHHhC
Confidence            37899999999999999997653

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=4.4e-05  Score=51.88  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      +..|+|.|++||||||+.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998743

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.43  E-value=0.00013  Score=51.01  Aligned_cols=23  Identities=35%  Similarity=0.644  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .-+++.||+|+|||+++++|.+.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            45899999999999999999964

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.42  E-value=4.2e-05  Score=50.71  Aligned_cols=23  Identities=30%  Similarity=0.619  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ++|+|+|++||||||+.+.|+..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999998764

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=4.8e-05  Score=51.17  Aligned_cols=81  Identities=19%  Similarity=0.217  Sum_probs=51.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      ..++++|++|+|||+++..|+....  .+..+..           . .+..++-+|...+..+......+...+...+..
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri~--~~~vp~~-----------L-~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e  109 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRII--NGEVPEG-----------L-KGRRVLALDMGALVAGAKYRGEFEERLKGVLND  109 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH--HTCSCGG-----------G-TTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHHH--hCCCCHH-----------H-cCceEEEeeHHHHhccCCccHHHHHHHHHHHHH
Confidence            4789999999999999998886542  1111110           1 455677788877776555555666666666654


Q ss_pred             cc-CCceEEEEEEeCC
Q 030624          101 AK-DGIHAVLVVFSVR  115 (174)
Q Consensus       101 ~~-~~~~~il~v~~~~  115 (174)
                      .. ..-++|+|+-+..
T Consensus       110 ~~~~~~~iILfIDeih  125 (195)
T d1jbka_         110 LAKQEGNVILFIDELH  125 (195)
T ss_dssp             HHHSTTTEEEEEETGG
T ss_pred             HhcCCCcEEEEcchHH
Confidence            32 3346777776665

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00087  Score=46.22  Aligned_cols=123  Identities=11%  Similarity=-0.007  Sum_probs=53.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeeEEEEEEEeCCcEEEEEeCC-CCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTP-GLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtp-G~~~~~~~~~~~~~~~~~~~   98 (174)
                      +.++|.|||.+||||+++++.-... ...|...+.     ....... -++.+.-+.++ .+..+.+....-.+++...+
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA-----~~a~~~~-~d~I~~~~~~~d~~~~~~S~F~~E~~~~~~il  115 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPA-----QKVEIGP-IDRIFTRVGAADDLASGRSTFMVEMTETANIL  115 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSS-----SEEEECC-CCEEEEEEC-----------CHHHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEec-----Cceeccc-chhheeEEccCcccccchhHHHHHHHHHHHHH
Confidence            5689999999999999998642211 111111111     1111111 12333333332 23333333444455566665


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE  152 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~  152 (174)
                      ..+-.  +.++++.....+-++.+ ......+.+.+... ..+.+++.||.....
T Consensus       116 ~~~~~--~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~-~~~~~i~tTH~~~l~  167 (234)
T d1wb9a2         116 HNATE--YSLVLMDEIGRGTSTYDGLSLAWACAENLANK-IKALTLFATHYFELT  167 (234)
T ss_dssp             HHCCT--TEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT-TCCEEEEECSCGGGG
T ss_pred             Hhccc--ccEEeecccccCCChhhhhHHHHHhhhhhhcc-ccceEEEecchHHHh
Confidence            54432  34555443432333333 22222323322221 145678888876543

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=7.6e-05  Score=49.20  Aligned_cols=24  Identities=38%  Similarity=0.332  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ...|+++|.+||||||+.+.++..
T Consensus        14 p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            368999999999999999988643

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.39  E-value=0.00083  Score=46.01  Aligned_cols=120  Identities=13%  Similarity=-0.006  Sum_probs=55.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeeEEEEEEEeCCcEEEEEeCC-CCCCCCCChHHHHHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTP-GLFDFSAGSEFVGKEIVKCI   98 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtp-G~~~~~~~~~~~~~~~~~~~   98 (174)
                      ..++|.|||.+||||+++++.-... ...|...+.     ....+.. -+..+.-+..+ .+..+.+....-.+++...+
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA-----~~~~i~~-~d~I~~~~~~~d~~~~~~StF~~el~~~~~il  109 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA-----EEAHLPL-FDGIYTRIGASDDLAGGKSTFMVEMEEVALIL  109 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS-----SEEEECC-CSEEEEECCC------CCSHHHHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHHHHHHHhccceeec-----CceEEee-cceEEEEECCCccccCCccHHHHhHHHHHHHh
Confidence            3689999999999999998542211 111111111     1111111 12222222222 23333333344445555555


Q ss_pred             HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCC
Q 030624           99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDE  150 (174)
Q Consensus        99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~  150 (174)
                      ..+  ..+.++++.....+-+..+ ......+.+.+...  .+..++.||...
T Consensus       110 ~~~--~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~--~~~~i~tTH~~e  158 (224)
T d1ewqa2         110 KEA--TENSLVLLDEVGRGTSSLDGVAIATAVAEALHER--RAYTLFATHYFE  158 (224)
T ss_dssp             HHC--CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHH--TCEEEEECCCHH
T ss_pred             ccC--CCCcEEeecccccCcchhhhcchHHHHHHHHhhc--CcceEEeeechh
Confidence            533  3345665554443445554 33333344443333  477888888643

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=5.5e-05  Score=50.54  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ++|+|+|++||||||..+.|+..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999988753

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.38  E-value=4.2e-05  Score=55.61  Aligned_cols=26  Identities=31%  Similarity=0.424  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCccc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAF   46 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~   46 (174)
                      ..+++.|++|||||||+|+|++..++
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~  192 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPK  192 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             CCEEEEeeccccchHHHHHHhhhccc
Confidence            45899999999999999999987643

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.36  E-value=6.3e-05  Score=50.34  Aligned_cols=28  Identities=25%  Similarity=0.271  Sum_probs=23.5

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           16 PSNGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        16 ~~~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      +..++..|+|-|..||||||+++.|...
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            3444578999999999999999999764

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.33  E-value=6.4e-05  Score=49.70  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .+|+|+|++||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999998654

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=3e-05  Score=51.63  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ...|.++|.+||||||+.+.|...
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            478899999999999999999753

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=5.8e-05  Score=50.55  Aligned_cols=21  Identities=38%  Similarity=0.561  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 030624           23 VVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        23 i~i~G~~g~GKStlin~l~~~   43 (174)
                      |+|+||+||||||+.+.|+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998754

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=6.1e-05  Score=49.72  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .+|+++|++||||||..+.|...
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999888643

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.31  E-value=5.7e-05  Score=49.20  Aligned_cols=22  Identities=27%  Similarity=0.543  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 030624           22 TVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .|+++|++||||||+.+.|+..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998653

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=7.1e-05  Score=49.53  Aligned_cols=23  Identities=30%  Similarity=0.551  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .+|+|+|++||||||+.+.|...
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            68899999999999999998754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.30  E-value=7.5e-05  Score=49.31  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      +.|+|.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5678899999999999999864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.30  E-value=7.4e-05  Score=50.02  Aligned_cols=25  Identities=24%  Similarity=0.526  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ...|.++|++||||||+.+.|+...
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3689999999999999999987654

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.27  E-value=7.5e-05  Score=52.26  Aligned_cols=25  Identities=24%  Similarity=0.477  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      +.-|++.||+|+|||||.++|++..
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            3558999999999999999998754

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.00043  Score=48.47  Aligned_cols=23  Identities=26%  Similarity=0.557  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      +-+++.||+|+|||+++++++..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            56899999999999999999874

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=0.0013  Score=45.21  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..+++.||+|+||||++..++..
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.17  E-value=0.00011  Score=52.46  Aligned_cols=19  Identities=37%  Similarity=0.595  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 030624           22 TVVLVGRTGNGKSATGNSI   40 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l   40 (174)
                      .-+++|+|||||||++.+|
T Consensus        26 lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHH
Confidence            5588999999999999987

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.16  E-value=0.00013  Score=48.59  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      +..|+|+|.+||||||+.+.|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998864

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=1.7e-05  Score=53.06  Aligned_cols=20  Identities=35%  Similarity=0.511  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 030624           22 TVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~   41 (174)
                      ..+|+|+|||||||++.+|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            55788999999999999974

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.11  E-value=0.00014  Score=47.60  Aligned_cols=21  Identities=24%  Similarity=0.558  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 030624           22 TVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~   42 (174)
                      .|.++|++||||||+.+.|+.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            467889999999999999864

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.00021  Score=49.48  Aligned_cols=29  Identities=24%  Similarity=0.283  Sum_probs=23.8

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           16 PSNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..+....+++.||+|+||||+++++++..
T Consensus        48 ~~~~~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          48 GSGVFRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             STTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34444679999999999999999998754

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.04  E-value=0.00023  Score=52.83  Aligned_cols=20  Identities=30%  Similarity=0.488  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 030624           22 TVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~   41 (174)
                      .-+|+|+|||||||++.+|.
T Consensus        27 l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          27 FTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999973

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.03  E-value=0.00014  Score=50.22  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .-+++.||+|+||||+++.+++.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            56899999999999999999864

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.02  E-value=0.00015  Score=49.80  Aligned_cols=26  Identities=19%  Similarity=0.291  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      +....+++.||+|+||||+++.++..
T Consensus        31 ~~~~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          31 ANLPHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             TTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCChHHHHHHHHHH
Confidence            33345899999999999999999865

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.99  E-value=0.00042  Score=51.43  Aligned_cols=102  Identities=16%  Similarity=0.176  Sum_probs=43.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM  100 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~  100 (174)
                      ..+++||++|+|||+++..|.....  .+..+..           + .+..++-+|...+..+......+...+...+..
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~i~--~~~vp~~-----------l-~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~  109 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQRIV--KGDVPEG-----------L-KGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQE  109 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHHH--HTCSCTT-----------S-TTCEEEEECC-----------CHHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHHHHH--hCCCCHH-----------H-cCceEEEeeHhhhhcccCcchhHHHHHHHHHHH
Confidence            3468999999999999988775432  2211111           0 345566778777776544334444444444443


Q ss_pred             ccC-CceEEEEEEeCCCCCCH----HHHHHHHHHHHHHhhh
Q 030624          101 AKD-GIHAVLVVFSVRSRFSQ----EEEAALHSLQTLFGKK  136 (174)
Q Consensus       101 ~~~-~~~~il~v~~~~~~~~~----~~~~~l~~l~~~~~~~  136 (174)
                      ... ..+.|+|+.+...-+..    ......+.|+..+...
T Consensus       110 ~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg  150 (387)
T d1qvra2         110 VVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG  150 (387)
T ss_dssp             HHTTCSSEEEEECCC-------------------HHHHHTT
T ss_pred             hccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCC
Confidence            322 23556666555522221    1234556666666443

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.95  E-value=0.00017  Score=51.94  Aligned_cols=23  Identities=22%  Similarity=0.525  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .-++++||+|+|||.|.++|++.
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            56899999999999999999864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.95  E-value=5e-05  Score=52.24  Aligned_cols=24  Identities=17%  Similarity=0.343  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..+++.||+|+||||+++.++...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHH
Confidence            468999999999999999998754

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.94  E-value=0.00013  Score=51.95  Aligned_cols=24  Identities=17%  Similarity=0.321  Sum_probs=17.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      +.+.|+|.|++||||||+.++|..
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHH
Confidence            457899999999999999988654

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.94  E-value=0.00023  Score=48.99  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      .-+++.||+|+||||+.+.|+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~   59 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASEL   59 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhcc
Confidence            458999999999999999998653

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.93  E-value=0.00031  Score=47.66  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=22.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .+...|.++|.+||||||+.+.|...
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34489999999999999999998753

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.92  E-value=0.00024  Score=49.48  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ...|++.||+|+|||++.++|++.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            367999999999999999999864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.92  E-value=0.00031  Score=47.66  Aligned_cols=25  Identities=20%  Similarity=0.276  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      +..+|+|-||+||||||..+.|+..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            3467889999999999999998764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.92  E-value=0.00034  Score=48.59  Aligned_cols=27  Identities=26%  Similarity=0.342  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           18 NGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        18 ~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      .....++|.|++|+|||++++.++...
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            344689999999999999999988653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.88  E-value=0.0029  Score=40.72  Aligned_cols=58  Identities=22%  Similarity=0.260  Sum_probs=37.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD   82 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~   82 (174)
                      ..|++-|+-|||||||++.++........+.++.-+..   ..+.. .+..++=+|..-+.+
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~---~~Y~~-~~~~i~H~DlYRl~~   91 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLV---EEYNI-AGKMIYHFDLYRLAD   91 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCE---EEEEE-TTEEEEEEECTTCSC
T ss_pred             eEEEEecCCCccHHHHHHHHHhhcccccccCCCceEEE---Eeecc-CCceEEEEEEeccCC
Confidence            78999999999999999999876543332222222221   12222 455677788877765

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00033  Score=47.36  Aligned_cols=23  Identities=17%  Similarity=0.362  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      +.|+|.||+||||||..+.|...
T Consensus         4 piI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            68899999999999999988754

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00036  Score=48.16  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 030624           22 TVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~   43 (174)
                      -+++.|++|+||||+++.++..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4788999999999999987654

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.0004  Score=49.91  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ...|+|.|++|||||||.+.|..
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHH
Confidence            57899999999999999887653

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.00013  Score=49.96  Aligned_cols=23  Identities=17%  Similarity=0.380  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..+++.||+|+||||+++.++..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHHH
Confidence            45889999999999999988764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00038  Score=47.70  Aligned_cols=24  Identities=21%  Similarity=0.227  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .+.|+|-|+-||||||+++.|...
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            378999999999999999998864

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.68  E-value=0.00055  Score=46.11  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+|+|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998864

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00072  Score=45.66  Aligned_cols=21  Identities=14%  Similarity=0.191  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 030624           22 TVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~   42 (174)
                      -+++.|++|+||||++..++.
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999987665

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.00061  Score=46.00  Aligned_cols=22  Identities=36%  Similarity=0.539  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+|+|..||||||+.+.|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            4799999999999999998864

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.00089  Score=47.51  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=20.7

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHh
Q 030624           16 PSNGERTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus        16 ~~~~~~~i~i~G~~g~GKStlin~l~   41 (174)
                      ....+..|+|.|++|||||||...|.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            33345789999999999999887653

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.60  E-value=0.0006  Score=47.30  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..++|.|+.|+|||||++.++.
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            6788999999999999998764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.59  E-value=0.0007  Score=50.45  Aligned_cols=24  Identities=33%  Similarity=0.389  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      --|++.||+||||||++.+++...
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEcCCCCCccHHHHHHhhhh
Confidence            479999999999999999988753

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.0012  Score=47.45  Aligned_cols=30  Identities=17%  Similarity=0.220  Sum_probs=23.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           14 TSPSNGERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        14 ~~~~~~~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..+..+...++++||+|+|||.|.++|+..
T Consensus        46 ~~~~~p~~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          46 GHEHKPVGSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             SCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCCceEEEEECCCcchhHHHHHHHHhh
Confidence            334444457899999999999999998753

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.00018  Score=49.18  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..+++.||+|+||||++..++..
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHH
Confidence            34789999999999999999864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.41  E-value=0.00058  Score=47.61  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCc
Q 030624           23 VVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        23 i~i~G~~g~GKStlin~l~~~~   44 (174)
                      +.+.|++|+|||++++.++...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHH
Confidence            4556999999999999988753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.41  E-value=0.00076  Score=47.36  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           21 RTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      .-+++.||+|+|||+|++++++..
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            569999999999999999998754

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.38  E-value=0.00069  Score=51.13  Aligned_cols=22  Identities=23%  Similarity=0.582  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+++||+|+|||-|.++|++
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999986

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.35  E-value=0.0011  Score=44.24  Aligned_cols=21  Identities=24%  Similarity=0.439  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 030624           22 TVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~   42 (174)
                      .|+|-|.-||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.22  E-value=0.0016  Score=44.63  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+|+|..||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999864

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.0016  Score=43.77  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      +-|+|-|..||||||+++.|..
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6789999999999999988764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0017  Score=44.46  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ++.|+|-|.-||||||+++.|...
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            367899999999999999998753

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0017  Score=43.77  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+|-|+-||||||+++.|..
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6789999999999998888754

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0014  Score=43.65  Aligned_cols=22  Identities=14%  Similarity=0.214  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..+.|.|++|+|||+|...++.
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            7899999999999999877664

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.11  E-value=0.0015  Score=47.99  Aligned_cols=25  Identities=20%  Similarity=0.310  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ...+++.||+|+|||+|.++|++..
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~~~  178 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLELC  178 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCeEEEECCCCCCHHHHHHHHHHHc
Confidence            3789999999999999999987643

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.04  E-value=0.002  Score=42.31  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .-+++.|++|+||||+.-.|...
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            56899999999999999887753

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.03  E-value=0.0021  Score=47.19  Aligned_cols=23  Identities=26%  Similarity=0.599  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..++++||+|+|||-+.++|+..
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeeeCCCCccHHHHHHHHHhh
Confidence            46999999999999999998753

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.00  E-value=0.0021  Score=42.18  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      .-+++.|++|+||||+.-.|..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            5689999999999999887664

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.0025  Score=43.07  Aligned_cols=24  Identities=17%  Similarity=0.320  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhC
Q 030624           19 GERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      +..-|+|-|.-||||||+++.|..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHH
Confidence            457899999999999999988764

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.79  E-value=0.0021  Score=43.67  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..+.|.|++|+|||+|...++-
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            7899999999999999877654

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.61  E-value=0.0035  Score=40.81  Aligned_cols=23  Identities=35%  Similarity=0.550  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .-+++.|++|+||||+.-.|...
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            67899999999999998776543

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.0049  Score=43.58  Aligned_cols=34  Identities=21%  Similarity=0.229  Sum_probs=28.0

Q ss_pred             cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           11 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        11 ~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ++.-.|-++..|++|+|++|+|||+|+..+....
T Consensus        34 ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          34 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             eeecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            4555677777999999999999999998887643

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.51  E-value=0.0041  Score=42.47  Aligned_cols=21  Identities=19%  Similarity=0.409  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~   41 (174)
                      ..++|.|++|+|||+|.-.++
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHH
Confidence            789999999999999976554

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.50  E-value=0.22  Score=34.49  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~   41 (174)
                      ..+.+.|++|+|||+|.-.++
T Consensus        61 ~i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          61 RVIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             SEEEEECSSSSSHHHHHHHHH
T ss_pred             eeEEEecCCCcHHHHHHHHHH
Confidence            789999999999999965544

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0059  Score=41.59  Aligned_cols=26  Identities=15%  Similarity=0.114  Sum_probs=21.6

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      .+.+  ..+.|.|++|+|||+|.-.++.
T Consensus        34 ip~G--~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          34 IESM--AITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             BCSS--EEEEEECCTTCTHHHHHHHHHH
T ss_pred             CcCC--EEEEEECCCCCCHHHHHHHHHH
Confidence            4555  8899999999999999877653

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.27  E-value=0.0078  Score=43.11  Aligned_cols=23  Identities=22%  Similarity=0.486  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      -.++++||+|+|||.+.+.|+..
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCcchHHHHHHHHHHH
Confidence            46889999999999999988764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.26  E-value=0.0054  Score=44.22  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .+|.|=|+-|+||||+++.|...
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC-
T ss_pred             eEEEEECCcCCCHHHHHHHHHHH
Confidence            68999999999999999999754

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.0048  Score=45.82  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      +-++|+|++|+|||++++.++-
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            3489999999999999877654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.21  E-value=0.0052  Score=41.62  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=20.5

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHh
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l~   41 (174)
                      .+.+  ..++|.|++|+|||+|...++
T Consensus        31 l~~G--~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          31 LESQ--SVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EETT--EEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCC--eEEEEEeCCCCCHHHHHHHHH
Confidence            3445  889999999999999986665

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.18  E-value=0.0029  Score=45.56  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 030624           22 TVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~   43 (174)
                      -++++|++|+|||++++++.+.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHh
Confidence            4899999999999999998753

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.12  E-value=0.0076  Score=43.52  Aligned_cols=25  Identities=32%  Similarity=0.351  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..+|.|=|.-|+||||+++.|....
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l   30 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAA   30 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHh
Confidence            3789999999999999999998753

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.03  E-value=0.008  Score=41.82  Aligned_cols=21  Identities=19%  Similarity=0.267  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~   41 (174)
                      ..++|.|++|+|||+|+..++
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            678999999999999875554

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.00  E-value=0.006  Score=41.49  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..++|.|++|+|||+|...++.
T Consensus        27 sl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            7889999999999999876654

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.99  E-value=0.0057  Score=44.16  Aligned_cols=25  Identities=24%  Similarity=0.292  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      ..+|.|=|.-|+||||+++.|....
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998653

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.98  E-value=0.006  Score=40.76  Aligned_cols=26  Identities=27%  Similarity=0.326  Sum_probs=22.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           19 GERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      +...+++.||+++|||+|.++|+...
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHHHh
Confidence            34789999999999999999987653

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.94  E-value=0.011  Score=41.37  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ...|+|.|..|.|||||.+.+.+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            378999999999999999988653

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.90  E-value=0.0067  Score=43.57  Aligned_cols=22  Identities=18%  Similarity=0.357  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 030624           22 TVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        22 ~i~i~G~~g~GKStlin~l~~~   43 (174)
                      .+++.||+|+|||.+.++|.+.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHH
Confidence            3556799999999999999875

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.83  E-value=0.0068  Score=40.72  Aligned_cols=24  Identities=25%  Similarity=0.481  Sum_probs=19.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHH
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSI   40 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l   40 (174)
                      .+.+  ..+.|.|++|+|||+|.-.+
T Consensus        23 i~~G--~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          23 LPIG--RSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             EETT--SEEEEEESTTSSHHHHHHHH
T ss_pred             CcCC--eEEEEEeCCCCCHHHHHHHH
Confidence            3455  88999999999999997543

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.82  E-value=0.012  Score=41.12  Aligned_cols=30  Identities=20%  Similarity=0.242  Sum_probs=24.0

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624           15 SPSNGERTVVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~   44 (174)
                      -...+...+.+.|+.++|||+|+++|....
T Consensus        99 ~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_          99 KKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            344555788999999999999999987643

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.72  E-value=0.0093  Score=40.18  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCc
Q 030624           23 VVLVGRTGNGKSATGNSILGRR   44 (174)
Q Consensus        23 i~i~G~~g~GKStlin~l~~~~   44 (174)
                      +.+.|++|+|||-|+++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            7899999999999999998754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.39  E-value=0.046  Score=37.15  Aligned_cols=49  Identities=22%  Similarity=0.180  Sum_probs=29.3

Q ss_pred             ccCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+|.+++|+++.+ .+...-.+  ++|.-.....  .+.+||+||+|+..+
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~id--R~Lv~a~~~~--i~pvIvlnK~DL~~~   56 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLD--RFLVLVEAND--IQPIICITKMDLIED   56 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHH--HHHHHHHTTT--CEEEEEEECGGGCCC
T ss_pred             CccccCEEEEEEECCCCCCCHHHHH--HHHHHHHHcC--CCEEEEEeccccccc
Confidence            3456798999988753 34333322  2222221222  477889999999875

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.23  E-value=0.009  Score=41.89  Aligned_cols=16  Identities=19%  Similarity=0.403  Sum_probs=13.7

Q ss_pred             EEEEEcCCCCCHHHHH
Q 030624           22 TVVLVGRTGNGKSATG   37 (174)
Q Consensus        22 ~i~i~G~~g~GKStli   37 (174)
                      -++|+|++|+||||++
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            3688899999999864

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.06  E-value=0.017  Score=39.93  Aligned_cols=21  Identities=29%  Similarity=0.287  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 030624           21 RTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~   41 (174)
                      ...+|.|++|+|||+|.-.|+
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHH
Confidence            567899999999999986554

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.00  E-value=0.022  Score=34.65  Aligned_cols=23  Identities=13%  Similarity=0.118  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ...|.+.|-+|+||||+.++|..
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHH
Confidence            38999999999999999999854

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.90  E-value=0.02  Score=41.70  Aligned_cols=19  Identities=37%  Similarity=0.562  Sum_probs=16.5

Q ss_pred             eEEEEEcCCCCCHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNS   39 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~   39 (174)
                      ...+|.|++|+||||++..
T Consensus       164 ~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHH
Confidence            6789999999999998744

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.89  E-value=0.013  Score=41.42  Aligned_cols=16  Identities=19%  Similarity=0.459  Sum_probs=13.7

Q ss_pred             EEEEEcCCCCCHHHHH
Q 030624           22 TVVLVGRTGNGKSATG   37 (174)
Q Consensus        22 ~i~i~G~~g~GKStli   37 (174)
                      .++|.|++|+||||++
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4788899999999865

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.53  E-value=0.053  Score=36.68  Aligned_cols=48  Identities=15%  Similarity=0.122  Sum_probs=29.7

Q ss_pred             ccCCceEEEEEEeCCC-CCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624          101 AKDGIHAVLVVFSVRS-RFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED  153 (174)
Q Consensus       101 ~~~~~~~il~v~~~~~-~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~  153 (174)
                      ....+|.+++|+.+.+ .+...- .+++-.....   .  .+.+||+||+|+.++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~--i~pvIvlnK~DL~~~   56 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---E--LETVMVINKMDLYDE   56 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---T--CEEEEEECCGGGCCH
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---C--CCEEEEEeCcccCCH
Confidence            3456798999998763 344332 2333222222   2  578999999999875

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=93.38  E-value=0.024  Score=34.82  Aligned_cols=21  Identities=29%  Similarity=0.257  Sum_probs=16.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSI   40 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l   40 (174)
                      ..+.++.+++|+|||+++-.+
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~   28 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAA   28 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHH
Confidence            367788999999999977443

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.24  E-value=0.025  Score=39.57  Aligned_cols=30  Identities=23%  Similarity=0.340  Sum_probs=23.7

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624           13 LTSPSNGERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        13 ~~~~~~~~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      .=.+-++..|++++|++|+|||+|+-.+..
T Consensus        61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          61 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             HHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             eeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence            334556668999999999999999777653

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.25  E-value=0.057  Score=37.43  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..+.+.|++|+|||||.-.++.
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCcHHHHHHHHHHH
Confidence            7889999999999999755543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.14  E-value=0.067  Score=36.63  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|+|.|++|+||+.+.+.|-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            4578999999999999999864

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=91.07  E-value=0.055  Score=37.81  Aligned_cols=31  Identities=16%  Similarity=0.319  Sum_probs=24.4

Q ss_pred             ccccCCCCCCceEEEEEcCCCCCHHHHHHHH
Q 030624           10 DWELTSPSNGERTVVLVGRTGNGKSATGNSI   40 (174)
Q Consensus        10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l   40 (174)
                      -++.=.+-++..|++|+|++|+|||+|+..+
T Consensus        57 ~ID~l~pig~GQr~~Ifg~~g~GKt~l~~~~   87 (276)
T d1fx0a3          57 AIDAMIPVGRGQRELIIGDRQTGKTAVATDT   87 (276)
T ss_dssp             TTTTTSCCBTTCBCBEEESSSSSHHHHHHHH
T ss_pred             EEeccccccCCceEeeccCCCCChHHHHHHH
Confidence            3455566667799999999999999988543

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=91.02  E-value=0.083  Score=36.23  Aligned_cols=19  Identities=42%  Similarity=0.658  Sum_probs=16.5

Q ss_pred             eEEEEEcCCCCCHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNS   39 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~   39 (174)
                      ++|+|.|.-|+||||+.-.
T Consensus         2 r~Iai~gKGGvGKTT~a~n   20 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQN   20 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHH
Confidence            6899999999999998633

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=90.95  E-value=0.15  Score=31.76  Aligned_cols=22  Identities=32%  Similarity=0.247  Sum_probs=17.3

Q ss_pred             CceEEEEEcCCCCCHHH-HHHHH
Q 030624           19 GERTVVLVGRTGNGKSA-TGNSI   40 (174)
Q Consensus        19 ~~~~i~i~G~~g~GKSt-lin~l   40 (174)
                      ....-+++||-.||||| |++.+
T Consensus         6 ~G~l~lI~GpMfSGKTteLi~~~   28 (141)
T d1xx6a1           6 HGWVEVIVGPMYSGKSEELIRRI   28 (141)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceeEEEEEeccccHHHHHHHHHH
Confidence            34778899999999999 44554

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.71  E-value=0.043  Score=38.52  Aligned_cols=30  Identities=13%  Similarity=0.308  Sum_probs=23.0

Q ss_pred             ccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 030624           12 ELTSPSNGERTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus        12 ~~~~~~~~~~~i~i~G~~g~GKStlin~l~   41 (174)
                      +.-.+-++..|++++|++|+|||+++..+.
T Consensus        60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             HHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             ecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence            334455666899999999999999875544

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=90.39  E-value=0.1  Score=34.24  Aligned_cols=21  Identities=19%  Similarity=0.401  Sum_probs=17.1

Q ss_pred             eEEEEEcCC-CCCHHHHHHHHh
Q 030624           21 RTVVLVGRT-GNGKSATGNSIL   41 (174)
Q Consensus        21 ~~i~i~G~~-g~GKStlin~l~   41 (174)
                      +++-|.|.. |+||||+.-.|+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            688999995 999999865543

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.13  E-value=0.1  Score=36.12  Aligned_cols=21  Identities=19%  Similarity=0.384  Sum_probs=17.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSI   40 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l   40 (174)
                      .+.+.+.|.-|+||||+.-.|
T Consensus         8 p~~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHH
T ss_pred             CeEEEEECCCcChHHHHHHHH
Confidence            367889999999999975443

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=89.51  E-value=0.058  Score=32.65  Aligned_cols=16  Identities=38%  Similarity=0.368  Sum_probs=13.9

Q ss_pred             eEEEEEcCCCCCHHHH
Q 030624           21 RTVVLVGRTGNGKSAT   36 (174)
Q Consensus        21 ~~i~i~G~~g~GKStl   36 (174)
                      ..+++.+++|+|||..
T Consensus         8 ~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             CEEEECCCTTSSTTTT
T ss_pred             CcEEEEcCCCCChhHH
Confidence            7788999999999954

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=88.61  E-value=0.12  Score=35.88  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 030624           21 RTVVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~~   43 (174)
                      ..+.+.|++++|||+|.-.++..
T Consensus        58 ~itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          58 RITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCccchHHHHHHHHHH
Confidence            68899999999999998666543

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.50  E-value=0.14  Score=33.20  Aligned_cols=18  Identities=28%  Similarity=0.315  Sum_probs=14.0

Q ss_pred             eEEEEEcCCCCCHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGN   38 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin   38 (174)
                      ..+++++|+|+|||...-
T Consensus        24 ~n~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          24 TNCLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             SCEEEECCTTSCHHHHHH
T ss_pred             CCeEEEeCCCCcHHHHHH
Confidence            346788999999997433

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.41  E-value=0.23  Score=30.49  Aligned_cols=20  Identities=25%  Similarity=0.341  Sum_probs=15.5

Q ss_pred             eEEEEEcCCCCCHHHH-HHHH
Q 030624           21 RTVVLVGRTGNGKSAT-GNSI   40 (174)
Q Consensus        21 ~~i~i~G~~g~GKStl-in~l   40 (174)
                      ..-+++||-.|||||- ++.+
T Consensus         3 ~L~li~GpMfsGKTt~Li~~~   23 (133)
T d1xbta1           3 QIQVILGPMFSGKSTELMRRV   23 (133)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEEecccCHHHHHHHHHH
Confidence            4568899999999994 4444

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=88.08  E-value=0.2  Score=34.34  Aligned_cols=21  Identities=29%  Similarity=0.597  Sum_probs=16.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHH
Q 030624           20 ERTVVLVGRTGNGKSATGNSI   40 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l   40 (174)
                      .+.|++.|.-|+||||+.-.|
T Consensus        20 ~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            367788899999999975443

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=87.90  E-value=0.17  Score=31.40  Aligned_cols=21  Identities=19%  Similarity=0.118  Sum_probs=16.3

Q ss_pred             eEEEEEcCCCCCHHH-HHHHHh
Q 030624           21 RTVVLVGRTGNGKSA-TGNSIL   41 (174)
Q Consensus        21 ~~i~i~G~~g~GKSt-lin~l~   41 (174)
                      ..-+++||-.||||| |++.+-
T Consensus         3 ~L~~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           3 WIEFITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEEEccccCHHHHHHHHHHH
Confidence            345789999999999 666653

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.41  E-value=0.22  Score=32.69  Aligned_cols=23  Identities=4%  Similarity=-0.000  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..-+++.|++|+|||++...+..
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998875

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=87.27  E-value=0.24  Score=34.26  Aligned_cols=19  Identities=37%  Similarity=0.599  Sum_probs=16.2

Q ss_pred             eEEEEEcCCCCCHHHHHHH
Q 030624           21 RTVVLVGRTGNGKSATGNS   39 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~   39 (174)
                      ++|++-|.-|+||||+.-.
T Consensus         3 r~IaisgKGGVGKTT~a~N   21 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQN   21 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHH
Confidence            6788999999999997543

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=86.88  E-value=0.13  Score=36.44  Aligned_cols=17  Identities=29%  Similarity=0.575  Sum_probs=15.0

Q ss_pred             eEEEEEcCCCCCHHHHH
Q 030624           21 RTVVLVGRTGNGKSATG   37 (174)
Q Consensus        21 ~~i~i~G~~g~GKStli   37 (174)
                      ...++.|-+|+|||||-
T Consensus        15 ~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          15 DVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             CEEEEEECTTSCHHHHT
T ss_pred             CEEEEEccCCCCccccc
Confidence            56799999999999975

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=86.58  E-value=0.2  Score=35.43  Aligned_cols=17  Identities=29%  Similarity=0.575  Sum_probs=15.0

Q ss_pred             eEEEEEcCCCCCHHHHH
Q 030624           21 RTVVLVGRTGNGKSATG   37 (174)
Q Consensus        21 ~~i~i~G~~g~GKStli   37 (174)
                      ..-++.|-+|+|||||-
T Consensus        15 ~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          15 DVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             CEEEEECSTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            56789999999999975

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.21  E-value=0.28  Score=31.74  Aligned_cols=21  Identities=24%  Similarity=0.608  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 030624           23 VVLVGRTGNGKSATGNSILGR   43 (174)
Q Consensus        23 i~i~G~~g~GKStlin~l~~~   43 (174)
                      ++|+|...||||.+...++..
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999888754

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.58  E-value=0.27  Score=34.90  Aligned_cols=17  Identities=29%  Similarity=0.573  Sum_probs=15.1

Q ss_pred             eEEEEEcCCCCCHHHHH
Q 030624           21 RTVVLVGRTGNGKSATG   37 (174)
Q Consensus        21 ~~i~i~G~~g~GKStli   37 (174)
                      ...++.|-+|+|||||-
T Consensus        15 d~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          15 DVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             CEEEEECCTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            56789999999999986

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.23  E-value=0.11  Score=34.97  Aligned_cols=17  Identities=29%  Similarity=0.475  Sum_probs=14.4

Q ss_pred             eEEEEEcCCCCCHHHHH
Q 030624           21 RTVVLVGRTGNGKSATG   37 (174)
Q Consensus        21 ~~i~i~G~~g~GKStli   37 (174)
                      +.+++++|+|+|||...
T Consensus        59 ~~~~i~apTGsGKT~~~   75 (237)
T d1gkub1          59 ESFAATAPTGVGKTSFG   75 (237)
T ss_dssp             CCEECCCCBTSCSHHHH
T ss_pred             CCEEEEecCCChHHHHH
Confidence            56889999999999753

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.09  E-value=0.093  Score=34.39  Aligned_cols=17  Identities=24%  Similarity=0.364  Sum_probs=14.5

Q ss_pred             eEEEEEcCCCCCHHHHH
Q 030624           21 RTVVLVGRTGNGKSATG   37 (174)
Q Consensus        21 ~~i~i~G~~g~GKStli   37 (174)
                      ..+++.+|+|+|||+..
T Consensus        41 ~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             SCEEEECSSHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHH
Confidence            56889999999999753

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.21  E-value=0.41  Score=31.54  Aligned_cols=20  Identities=30%  Similarity=0.685  Sum_probs=16.1

Q ss_pred             eEEEEE-cCCCCCHHHHHHHH
Q 030624           21 RTVVLV-GRTGNGKSATGNSI   40 (174)
Q Consensus        21 ~~i~i~-G~~g~GKStlin~l   40 (174)
                      +.|+|+ |.-|+||||+.-.|
T Consensus         2 kvIav~s~KGGvGKTtia~nl   22 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANL   22 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHH
Confidence            567888 88999999987543

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=83.80  E-value=0.4  Score=37.62  Aligned_cols=22  Identities=27%  Similarity=0.653  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|++.|.+|||||...+.++.
T Consensus        87 QsIiisGeSGsGKTe~~k~il~  108 (684)
T d1lkxa_          87 QCVIISGESGAGKTEASKKIMQ  108 (684)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999998776543

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=83.25  E-value=0.46  Score=37.47  Aligned_cols=23  Identities=17%  Similarity=0.603  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 030624           20 ERTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ...|++-|.+|||||...+.++.
T Consensus       125 nQsIiisGeSGaGKTe~~k~il~  147 (712)
T d1d0xa2         125 NQSLLITGESGAGKTENTKKVIQ  147 (712)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEeCCCCCCHHHHHHHHHH
Confidence            36899999999999998777644

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=83.24  E-value=0.16  Score=35.09  Aligned_cols=15  Identities=27%  Similarity=0.443  Sum_probs=13.6

Q ss_pred             eEEEEEcCCCCCHHH
Q 030624           21 RTVVLVGRTGNGKSA   35 (174)
Q Consensus        21 ~~i~i~G~~g~GKSt   35 (174)
                      +.+++.+++|+|||+
T Consensus        10 ~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2          10 RLTIMDLHPGAGKTK   24 (305)
T ss_dssp             CEEEECCCTTSSTTT
T ss_pred             CcEEEEECCCCCHHH
Confidence            678899999999995

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=82.69  E-value=0.47  Score=37.38  Aligned_cols=22  Identities=18%  Similarity=0.572  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 030624           21 RTVVLVGRTGNGKSATGNSILG   42 (174)
Q Consensus        21 ~~i~i~G~~g~GKStlin~l~~   42 (174)
                      ..|++-|.+|||||...+.++.
T Consensus        92 Q~IiisGeSGaGKTe~~k~il~  113 (710)
T d1br2a2          92 QSILCTGESGAGKTENTKKVIQ  113 (710)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            6799999999999998766543

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=82.50  E-value=0.48  Score=37.83  Aligned_cols=22  Identities=18%  Similarity=0.662  Sum_probs=17.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 030624           20 ERTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~   41 (174)
                      ...|++.|.+|||||...+.++
T Consensus       123 ~QsIiisGeSGaGKTe~~K~il  144 (794)
T d2mysa2         123 NQSILITGESGAGKTVNTKRVI  144 (794)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHH
Confidence            3679999999999998766544

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.67  E-value=0.61  Score=30.66  Aligned_cols=20  Identities=30%  Similarity=0.699  Sum_probs=16.0

Q ss_pred             eEEEEE-cCCCCCHHHHHHHH
Q 030624           21 RTVVLV-GRTGNGKSATGNSI   40 (174)
Q Consensus        21 ~~i~i~-G~~g~GKStlin~l   40 (174)
                      +.|++. +..|+||||+.-.|
T Consensus         3 ~vIav~~~kGGvGKTtia~nL   23 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANL   23 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCcHHHHHHHH
Confidence            568888 78999999986554

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=80.06  E-value=0.67  Score=36.95  Aligned_cols=22  Identities=18%  Similarity=0.619  Sum_probs=17.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 030624           20 ERTVVLVGRTGNGKSATGNSIL   41 (174)
Q Consensus        20 ~~~i~i~G~~g~GKStlin~l~   41 (174)
                      ...|++-|.+|||||...+.++
T Consensus       121 nQ~IiisGESGaGKTe~~K~il  142 (789)
T d1kk8a2         121 NQSCLITGESGAGKTENTKKVI  142 (789)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHH
Confidence            4678999999999998755544