Citrus Sinensis ID: 030626

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MSVNYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAADSQN
Secondary Structure (PSIPRED)
ccHHcHHHHHHccccEEEEcccccccccccccHHHHHHHcccccEEEEcHHHHHHHHHHccEEEEcccccccccccEEEEccccccccccccccccEEEEcccccccccccccccEEEEEEccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHcccEEEEccccccHHHHccHHHHHHHHcccccEEEEcHHHHHHHHHcccEEEEEccccccccccEEEEcccccccEcccccccEEEEEEEEEEEEcccccccEEEEEEEccccEEEEEEEcccccEEEEEccccHHccHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MSVNYLVSYCrknprgvlispgpgapqdsgislqtvlelgptvplfgvCMGLQcigeafggkivrsplgvmhgksslvyydekgedgllaglsnpftagryHSLViekesfpsdalevtawTEDGLIMAARHKKYkhlqgvqfhpesiittEGKTIVRNFIKMIVRKEAADSQN
Flexible Loop (DISEMBL)
MSVNYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKhlqgvqfhpesiittegktIVRNFIKMIVRKEAADSQN
Low Complexity Region (SEG)
MSVNYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAADSQN
Disordered region (IsUnstruct)
***NYLVSYCRKNPRGVLI**********GISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR********
Disordered Region (DISOPRED)
MSVNYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM***********
Disordered Region (DISEMBL)
MSVNYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAADSQN
Disordered Region (DISPRO)
*SVNYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVNYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAADSQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
P48261	190	Anthranilate synthase com	N/A	no	0.844	0.773	0.572	2e-45
P51362	189	Anthranilate synthase com	N/A	no	0.839	0.772	0.490	3e-39
Q1XDC5	189	Anthranilate synthase com	N/A	no	0.833	0.767	0.48	2e-37
Q08654	589	Anthranilate synthase com	yes	no	0.844	0.249	0.490	1e-36
P00901	198	Anthranilate synthase com	yes	no	0.827	0.727	0.483	5e-35
P20576	201	Anthranilate synthase com	yes	no	0.821	0.711	0.474	1e-33
P28819	194	Para-aminobenzoate/anthra	yes	no	0.862	0.773	0.464	6e-33
P00903	187	Para-aminobenzoate syntha	N/A	no	0.816	0.759	0.466	7e-33
P06193	187	Para-aminobenzoate syntha	yes	no	0.827	0.770	0.426	3e-32
P00902	194	Anthranilate synthase com	yes	no	0.844	0.757	0.455	3e-32

>sp|P48261|TRPG_CYAPA Anthranilate synthase component II OS=Cyanophora paradoxa GN=trpG PE=3 SV=1

 Score =  181 bits (460), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/152 (57%), Positives = 113/152 (74%), Gaps = 5/152 (3%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMH 72
           N +G++ISP PG P+DSGIS   +  LG  +P+ GVC+G Q IG  FGGKI+++P  ++H
Sbjct: 43  NIQGIIISPCPGGPEDSGISQGIIKYLGNQIPILGVCLGHQTIGHVFGGKIIKAP-KLIH 101

Query: 73  GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARH 132
           GK S++++D KG   +   L NP TA RYHSL+IEKES P D LE+TAWTEDGLIM  +H
Sbjct: 102 GKPSIIFHDGKG---VFQNLKNPITATRYHSLIIEKESCP-DELEITAWTEDGLIMGIQH 157

Query: 133 KKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 164
           KKYK LQG+QFHPESI+T  GK I++NFI  +
Sbjct: 158 KKYKQLQGIQFHPESILTESGKQILQNFINCL 189

Cyanophora paradoxa (taxid: 2762)
EC: 4EC: .EC: 1EC: .EC: 3EC: .EC: 2EC: 7

>sp|P51362|TRPG_PORPU Anthranilate synthase component II OS=Porphyra purpurea GN=trpG PE=4 SV=1

 Score =  160 bits (406), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 74/151 (49%), Positives = 106/151 (70%), Gaps = 5/151 (3%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
           + NP  ++ISPGPG P +SGISL  +  L   +P+ GVC+G Q IG   GG I++ P  +
Sbjct: 41  KLNPEKIIISPGPGKPTESGISLDVISSLAEYIPILGVCLGHQSIGYINGGSIIKVP-KI 99

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
           MHGK+S +Y+D    + L   L NPF A RYHSL+I++ +FP++ L VTAWT++ +IMA 
Sbjct: 100 MHGKTSQIYHD---REDLFINLPNPFIATRYHSLIIDRANFPTN-LAVTAWTDNNIIMAC 155

Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFI 161
           RHK YK L+G+QFHPES+ T  G+ +++NF+
Sbjct: 156 RHKHYKMLRGIQFHPESLWTVCGQQLLKNFL 186

Porphyra purpurea (taxid: 2787)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|Q1XDC5|TRPG_PORYE Anthranilate synthase component II OS=Porphyra yezoensis GN=trpG PE=4 SV=1

 Score =  154 bits (390), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/150 (48%), Positives = 104/150 (69%), Gaps = 5/150 (3%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMH 72
           NP  ++ISPGPG P DSGISL  +     ++P+ GVC+G Q IG   GG+I++    +MH
Sbjct: 43  NPNKIIISPGPGKPSDSGISLDVISSFSDSIPILGVCLGHQSIGYLNGGRIIKVS-EIMH 101

Query: 73  GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARH 132
           GK+S +Y++    + L   L NPF A RYHSL+I+  +FPS +L +TAWTE+ +IMA RH
Sbjct: 102 GKTSKIYHN---NEDLFKTLPNPFIATRYHSLIIDNLNFPS-SLAITAWTENNIIMACRH 157

Query: 133 KKYKHLQGVQFHPESIITTEGKTIVRNFIK 162
           K  + L+G+QFHPES+ T  G+ ++RNF++
Sbjct: 158 KDNQMLRGIQFHPESLWTFYGQQLLRNFLE 187

Porphyra yezoensis (taxid: 2788)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|Q08654|TRPG_THEMA Anthranilate synthase component II OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=trpGD PE=3 SV=2

 Score =  152 bits (384), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/153 (49%), Positives = 108/153 (70%), Gaps = 6/153 (3%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
           RKNP  ++ISPGPG P+++GIS+  V      VP+ GVC+G Q IG AFGGKIV +   +
Sbjct: 88  RKNPTHIVISPGPGRPEEAGISVDVVRHFSGKVPILGVCLGHQVIGYAFGGKIVHAKR-I 146

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
           +HGK+S + ++ K   G+ +G+ NP  A RYHSLV+E+ S P + LE+TA ++DG IM  
Sbjct: 147 LHGKTSKIVHNGK---GVFSGVKNPLVATRYHSLVVEEASLP-EVLEITAKSDDGEIMGL 202

Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
           +HK++    GVQFHPES++T EGK I++NF+ +
Sbjct: 203 QHKEHPTF-GVQFHPESVLTEEGKRIIKNFLNI 234

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: 8

>sp|P00901|TRPG_PSEPU Anthranilate synthase component II OS=Pseudomonas putida GN=trpG PE=1 SV=2

 Score =  146 bits (369), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 106/155 (68%), Gaps = 11/155 (7%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMH 72
           NP  +++SPGP  P ++G+S++ +L     +P+ GVC+G Q IG+AFGG +VR+   VMH
Sbjct: 44  NPERIVVSPGPCTPSEAGVSIEAILHFAGKLPILGVCLGHQSIGQAFGGDVVRAR-QVMH 102

Query: 73  GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT--EDGL---I 127
           GK+S V++ +    G+  GL+NP T  RYHSLV+++E+ P D LEVTAWT  EDG    I
Sbjct: 103 GKTSPVHHRDL---GVFTGLNNPLTVTRYHSLVVKRETLP-DCLEVTAWTAHEDGSVDEI 158

Query: 128 MAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 162
           M  RHK    ++GVQFHPESI+T +G  +  NF+K
Sbjct: 159 MGLRHKTLN-IEGVQFHPESILTEQGHELFANFLK 192

Pseudomonas putida (taxid: 303)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P20576|TRPG_PSEAE Anthranilate synthase component II OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=trpG PE=4 SV=2

 Score =  142 bits (357), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/154 (47%), Positives = 107/154 (69%), Gaps = 11/154 (7%)

Query: 14  PRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHG 73
           P  +++SPGP  P ++G+SL  +      +PL GVC+G Q IG+AFGG++VR+   VMHG
Sbjct: 44  PERIVLSPGPCTPNEAGVSLAVIERFAGKLPLLGVCLGHQSIGQAFGGEVVRAR-QVMHG 102

Query: 74  KSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE--DGL---IM 128
           K+S +++ +    G+ AGL+NP T  RYHSLV+++ES P + LEVTAWT+  DG    IM
Sbjct: 103 KTSPIHHKDL---GVFAGLANPLTVTRYHSLVVKRESLP-ECLEVTAWTQHADGSLDEIM 158

Query: 129 AARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 162
             RHK   +++GVQFHPESI+T +G  ++ NF++
Sbjct: 159 GVRHKTL-NVEGVQFHPESILTEQGHELLANFLR 191

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P28819|PABA_BACSU Para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II OS=Bacillus subtilis (strain 168) GN=pabA PE=4 SV=1

 Score =  140 bits (352), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 105/157 (66%), Gaps = 7/157 (4%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMH 72
           +P  ++ISPGP +P ++GISL+ +      +P+FGVC+G Q I + FGG +VR+   +MH
Sbjct: 43  SPDFLMISPGPCSPDEAGISLEAIKHFAGKIPIFGVCLGHQSIAQVFGGDVVRAE-RLMH 101

Query: 73  GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARH 132
           GK+S + +D K    +  GL NP  A RYHSL+++ E+ PS    VTA T++G IMA RH
Sbjct: 102 GKTSDIEHDGK---TIFEGLKNPLVATRYHSLIVKPETLPS-CFTVTAQTKEGEIMAIRH 157

Query: 133 KKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 169
                ++GVQFHPESI+T+ GK ++RNFI+   RKE 
Sbjct: 158 NDLP-IEGVQFHPESIMTSFGKEMLRNFIET-YRKEV 192

Catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine and also involved in the synthesis of anthranilate.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

>sp|P00903|PABA_ECOLI Para-aminobenzoate synthase glutamine amidotransferase component II OS=Escherichia coli (strain K12) GN=pabA PE=1 SV=1

 Score =  139 bits (351), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 69/148 (46%), Positives = 103/148 (69%), Gaps = 6/148 (4%)

Query: 14  PRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHG 73
           P+ ++ISPGP  P ++GISL  +      +P+ GVC+G Q + +AFGGK+VR+   VMHG
Sbjct: 44  PQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAA-KVMHG 102

Query: 74  KSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHK 133
           K+S + ++  GE G+  GL+NP T  RYHSLV+E +S P+   +VTAW+E   IM  RH+
Sbjct: 103 KTSPITHN--GE-GVFRGLANPLTVTRYHSLVVEPDSLPA-CFDVTAWSETREIMGIRHR 158

Query: 134 KYKHLQGVQFHPESIITTEGKTIVRNFI 161
           ++  L+GVQFHPESI++ +G  ++ NF+
Sbjct: 159 QWD-LEGVQFHPESILSEQGHQLLANFL 185

Catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine.

Escherichia coli (strain K12) (taxid: 83333)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 8

EC: 5

>sp|P06193|PABA_SALTY Para-aminobenzoate synthase glutamine amidotransferase component II OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=pabA PE=4 SV=1

 Score =  137 bits (346), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 101/150 (67%), Gaps = 6/150 (4%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMH 72
           NP+ ++ISPGP  P D+GISL  +      +P+ GVC+G Q + +AFG  +VR+   VMH
Sbjct: 43  NPQKIVISPGPCTPNDAGISLAVIRHYAGRIPMLGVCLGHQAMAQAFGASVVRAA-KVMH 101

Query: 73  GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARH 132
           GK+S V ++ +   G+  GL +P T  RYHSL+++  + P +  E+TAW+E   IM  RH
Sbjct: 102 GKTSPVTHNGQ---GVFRGLPSPLTVTRYHSLIVDPATLP-ECFEITAWSETQEIMGIRH 157

Query: 133 KKYKHLQGVQFHPESIITTEGKTIVRNFIK 162
           +++  L+GVQFHPESI++ +G  +++NF++
Sbjct: 158 REWD-LEGVQFHPESILSEQGHALLKNFLR 186

Catalyzes the biosynthesis of 4-amino-4-deoxychorismate (ADC) from chorismate and glutamine.

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 8

EC: 5

>sp|P00902|TRPG_ACIAD Anthranilate synthase component 2 OS=Acinetobacter sp. (strain ADP1) GN=trpG PE=4 SV=1

 Score =  137 bits (345), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 105/158 (66%), Gaps = 11/158 (6%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
           R  P+ +++ PGP +P ++GIS+  +      +PL GVC+G Q IG+AFGG I+R+   V
Sbjct: 41  RWQPKYLVVGPGPCSPTEAGISIPAIHHFAGRIPLLGVCLGHQAIGQAFGGNIIRAKT-V 99

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT--EDGL-- 126
           MHG+ S +Y+ +K   G+ + L +PF+A RYHSLVIE+ES P + LEVT WT   DG   
Sbjct: 100 MHGRLSDMYHTDK---GIFSNLPSPFSATRYHSLVIEQESLP-ECLEVTCWTNQNDGSIE 155

Query: 127 -IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
            IM  +HK    ++GVQFHPESI++  G  I +NF+++
Sbjct: 156 EIMGVKHKTLP-VEGVQFHPESILSQHGHQIFKNFLEI 192

Acinetobacter sp. (strain ADP1) (taxid: 62977)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
356558733	272	PREDICTED: anthranilate synthase compone	0.931	0.595	0.907	4e-82
356558731	278	PREDICTED: anthranilate synthase compone	0.931	0.582	0.907	4e-82
224108213	276	anthranilate synthase, beta subunit, ASB	0.936	0.590	0.896	2e-81
356521181	276	PREDICTED: anthranilate synthase compone	0.931	0.586	0.901	5e-81
255573238	281	Anthranilate synthase component II, puta	0.936	0.580	0.871	3e-80
217072976	270	unknown [Medicago truncatula] gi|3884985	0.931	0.6	0.864	5e-80
297845630	277	hypothetical protein ARALYDRAFT_472860 [	0.908	0.570	0.879	5e-80
225424454	285	PREDICTED: anthranilate synthase compone	0.913	0.557	0.874	6e-80
25403004	469	probable anthranilate synthase beta subu	0.913	0.339	0.861	8e-80
224101933	240	anthranilate synthase, beta subunit, ASB	0.913	0.662	0.899	1e-79

>gi|356558733|ref|XP_003547657.1| PREDICTED: anthranilate synthase component II-like isoform 2 [Glycine max]

 Score =  308 bits (790), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 147/162 (90%), Positives = 152/162 (93%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
           RKNPRGVLISPGPG PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP GV
Sbjct: 111 RKNPRGVLISPGPGEPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPHGV 170

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
           MHGKSS+VYYDEKGEDGLLAGLSNPF AGRYHSLVIEKESFP D LE TAWTEDGLIMAA
Sbjct: 171 MHGKSSMVYYDEKGEDGLLAGLSNPFLAGRYHSLVIEKESFPHDELEATAWTEDGLIMAA 230

Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAADS 172
           RHKKYKHLQGVQFHPESIIT EGKTIVRNF+K+I ++EA  S
Sbjct: 231 RHKKYKHLQGVQFHPESIITPEGKTIVRNFVKLIEKREAGGS 272

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558731|ref|XP_003547656.1| PREDICTED: anthranilate synthase component II-like isoform 1 [Glycine max]

 Score =  308 bits (790), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 147/162 (90%), Positives = 152/162 (93%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
           RKNPRGVLISPGPG PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP GV
Sbjct: 117 RKNPRGVLISPGPGEPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPHGV 176

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
           MHGKSS+VYYDEKGEDGLLAGLSNPF AGRYHSLVIEKESFP D LE TAWTEDGLIMAA
Sbjct: 177 MHGKSSMVYYDEKGEDGLLAGLSNPFLAGRYHSLVIEKESFPHDELEATAWTEDGLIMAA 236

Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAADS 172
           RHKKYKHLQGVQFHPESIIT EGKTIVRNF+K+I ++EA  S
Sbjct: 237 RHKKYKHLQGVQFHPESIITPEGKTIVRNFVKLIEKREAGGS 278

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108213|ref|XP_002314761.1| anthranilate synthase, beta subunit, ASB1 [Populus trichocarpa] gi|222863801|gb|EEF00932.1| anthranilate synthase, beta subunit, ASB1 [Populus trichocarpa]

 Score =  306 bits (785), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 147/164 (89%), Positives = 154/164 (93%), Gaps = 1/164 (0%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
           RK PRGVLISPGPG PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP GV
Sbjct: 114 RKKPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPYGV 173

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
           +HGK S VYYDEKGEDGL AGLSNPFTAGRYHSLVIEKESFP + LEVTAWTEDGLIMAA
Sbjct: 174 VHGKGSPVYYDEKGEDGLFAGLSNPFTAGRYHSLVIEKESFPGEELEVTAWTEDGLIMAA 233

Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAADSQN 174
           RH+KYKHLQGVQFHPESIIT+EGKTIVRNFIKM+ RKE A+S+N
Sbjct: 234 RHRKYKHLQGVQFHPESIITSEGKTIVRNFIKMVERKE-AESEN 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521181|ref|XP_003529236.1| PREDICTED: anthranilate synthase component II-like [Glycine max]

 Score =  305 bits (781), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 146/162 (90%), Positives = 151/162 (93%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
           RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVR+P GV
Sbjct: 115 RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRAPHGV 174

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
           MHGKSS+VYYDEKGEDG+LAGLSNPF AGRYHSLVIEK SFP D LEVTAWTEDGLIMAA
Sbjct: 175 MHGKSSMVYYDEKGEDGVLAGLSNPFLAGRYHSLVIEKGSFPDDELEVTAWTEDGLIMAA 234

Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAADS 172
           RHKKYKHLQGVQFHPESIIT EGKTIV NF+K+I R EA  S
Sbjct: 235 RHKKYKHLQGVQFHPESIITPEGKTIVHNFVKLIERSEAVGS 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573238|ref|XP_002527548.1| Anthranilate synthase component II, putative [Ricinus communis] gi|223533098|gb|EEF34857.1| Anthranilate synthase component II, putative [Ricinus communis]

 Score =  302 bits (774), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 143/164 (87%), Positives = 155/164 (94%), Gaps = 1/164 (0%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
           RKNPRGVLISPGPG P+DSGISL+TVLELGP VPLFGVCMGLQCIGEAFGGKIVRSP GV
Sbjct: 119 RKNPRGVLISPGPGEPRDSGISLETVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPYGV 178

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
           MHGKSS VYYDEKGEDGL +GLSNPFTAGRYHSLVIE +SFP++ LE+TAWTEDGLIMAA
Sbjct: 179 MHGKSSPVYYDEKGEDGLFSGLSNPFTAGRYHSLVIENDSFPTEELEITAWTEDGLIMAA 238

Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAADSQN 174
           RHKKYKHLQGVQFHPESIIT+EGKTIV+NFIK++ RKE A+SQN
Sbjct: 239 RHKKYKHLQGVQFHPESIITSEGKTIVQNFIKLVERKE-AESQN 281

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072976|gb|ACJ84848.1| unknown [Medicago truncatula] gi|388498572|gb|AFK37352.1| unknown [Medicago truncatula]

 Score =  301 bits (772), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 140/162 (86%), Positives = 151/162 (93%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
           RKNPRGVLISPGPG PQDSGISLQTV ELGPT+P+FGVCMGLQC+GEAFGGKI+R+P GV
Sbjct: 109 RKNPRGVLISPGPGTPQDSGISLQTVFELGPTIPVFGVCMGLQCMGEAFGGKIIRAPSGV 168

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
           MHGKSSLVYYDEKGEDGLLAGL NPF AGRYHSLVIEKESFP D LEVTAWTEDGLIMAA
Sbjct: 169 MHGKSSLVYYDEKGEDGLLAGLPNPFLAGRYHSLVIEKESFPDDELEVTAWTEDGLIMAA 228

Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAADS 172
           RHKKY+H+QGVQFHPESIIT +GKTIV NF+K+I +KEAA S
Sbjct: 229 RHKKYRHMQGVQFHPESIITPDGKTIVHNFVKLIEKKEAARS 270

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845630|ref|XP_002890696.1| hypothetical protein ARALYDRAFT_472860 [Arabidopsis lyrata subsp. lyrata] gi|297336538|gb|EFH66955.1| hypothetical protein ARALYDRAFT_472860 [Arabidopsis lyrata subsp. lyrata]

 Score =  301 bits (772), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 139/158 (87%), Positives = 150/158 (94%)

Query: 12  KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVM 71
           KNPRGVLISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGGKIVRSP GVM
Sbjct: 116 KNPRGVLISPGPGTPQDSGISLQTVLELGPRVPLFGVCMGLQCIGEAFGGKIVRSPFGVM 175

Query: 72  HGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAAR 131
           HGKSS+VYYDEKGE+GL +GLSNPF  GRYHSLVIEK+SFPSD LEVTAWTEDGL+MAAR
Sbjct: 176 HGKSSMVYYDEKGEEGLFSGLSNPFLVGRYHSLVIEKDSFPSDELEVTAWTEDGLVMAAR 235

Query: 132 HKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 169
           H+KYKH+QGVQFHPESIITTEGKTIVRNFIK++ +KE+
Sbjct: 236 HRKYKHIQGVQFHPESIITTEGKTIVRNFIKLVEKKES 273

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424454|ref|XP_002281633.1| PREDICTED: anthranilate synthase component II-like [Vitis vinifera]

 Score =  301 bits (771), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 139/159 (87%), Positives = 151/159 (94%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
           +KNPRGVLISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGGKIVRSP GV
Sbjct: 123 KKNPRGVLISPGPGTPQDSGISLQTVLELGPVVPLFGVCMGLQCIGEAFGGKIVRSPFGV 182

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
           MHGKSS VYYDEKGEDGL +GLSNPFTAGRYHSLVIEK++FP++ALE+TAWTEDGLIMAA
Sbjct: 183 MHGKSSPVYYDEKGEDGLFSGLSNPFTAGRYHSLVIEKDTFPNEALEITAWTEDGLIMAA 242

Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 169
           RHKKYKHLQGVQFHPESIIT+EG+ IVRNF++MI R E+
Sbjct: 243 RHKKYKHLQGVQFHPESIITSEGRGIVRNFVRMIERSES 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|25403004|pir||B86381 probable anthranilate synthase beta subunit [imported] - Arabidopsis thaliana

 Score =  301 bits (770), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 137/159 (86%), Positives = 151/159 (94%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
           RKNPRGVLISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGGKIVRSP GV
Sbjct: 307 RKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGV 366

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
           MHGKSS+V+YDEKGE+GL +GLSNPF  GRYHSLVIEK++FPSD LEVTAWTEDGL+MAA
Sbjct: 367 MHGKSSMVHYDEKGEEGLFSGLSNPFIVGRYHSLVIEKDTFPSDELEVTAWTEDGLVMAA 426

Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 169
           RH+KYKH+QGVQFHPESIITTEGKTIVRNFIK++ +K++
Sbjct: 427 RHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIVEKKDS 465

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class: N/A

Phylum: Streptophyta

>gi|224101933|ref|XP_002312481.1| anthranilate synthase, beta subunit, ASB2 [Populus trichocarpa] gi|222852301|gb|EEE89848.1| anthranilate synthase, beta subunit, ASB2 [Populus trichocarpa]

 Score =  300 bits (769), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 143/159 (89%), Positives = 149/159 (93%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
           RK PRGVLISPGPG PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGK+VRSP GV
Sbjct: 81  RKKPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKVVRSPYGV 140

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
           +HGK S VYYDEKGEDGL +GLSNPFTAGRYHSLVIEKESFPS+ LEVTAWTEDGLIMAA
Sbjct: 141 VHGKGSPVYYDEKGEDGLFSGLSNPFTAGRYHSLVIEKESFPSEELEVTAWTEDGLIMAA 200

Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 169
           RH+KYKHLQGVQFHPESIIT+EGK IV NFIKMI RKEA
Sbjct: 201 RHRKYKHLQGVQFHPESIITSEGKIIVSNFIKMIERKEA 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2826037	235	AT1G24807 [Arabidopsis thalian	0.913	0.676	0.861	4e-74
TAIR|locus:2826092	222	AT1G24909 [Arabidopsis thalian	0.913	0.716	0.861	4e-74
TAIR|locus:2826077	222	AT1G25083 [Arabidopsis thalian	0.913	0.716	0.861	4e-74
TAIR|locus:2825965	222	AT1G25155 [Arabidopsis thalian	0.913	0.716	0.861	4e-74
TAIR|locus:2174378	273	AT5G57890 [Arabidopsis thalian	0.913	0.582	0.861	6.5e-74
TIGR_CMR|BA_0069	195	BA_0069 "para-aminobenzoate sy	0.821	0.733	0.483	5.1e-35
UNIPROTKB|Q74AH3	190	trpG "Anthranilate synthase, g	0.827	0.757	0.493	8.3e-35
TIGR_CMR|GSU_2382	190	GSU_2382 "anthranilate synthas	0.827	0.757	0.493	8.3e-35
UNIPROTKB|Q5LRH9	193	trpG "Anthranilate synthase co	0.839	0.756	0.503	1.3e-34
TIGR_CMR|CHY_1586	189	CHY_1586 "para-aminobenzoate/a	0.821	0.756	0.489	1.3e-34

TAIR|locus:2826037 AT1G24807 [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 137/159 (86%), Positives = 151/159 (94%)

Query:    11 RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
             RKNPRGVLISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGGKIVRSP GV
Sbjct:    73 RKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGV 132

Query:    71 MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
             MHGKSS+V+YDEKGE+GL +GLSNPF  GRYHSLVIEK++FPSD LEVTAWTEDGL+MAA
Sbjct:   133 MHGKSSMVHYDEKGEEGLFSGLSNPFIVGRYHSLVIEKDTFPSDELEVTAWTEDGLVMAA 192

Query:   131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 169
             RH+KYKH+QGVQFHPESIITTEGKTIVRNFIK++ +K++
Sbjct:   193 RHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIVEKKDS 231

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2826092 AT1G24909 [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 137/159 (86%), Positives = 151/159 (94%)

Query:    11 RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
             RKNPRGVLISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGGKIVRSP GV
Sbjct:    60 RKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGV 119

Query:    71 MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
             MHGKSS+V+YDEKGE+GL +GLSNPF  GRYHSLVIEK++FPSD LEVTAWTEDGL+MAA
Sbjct:   120 MHGKSSMVHYDEKGEEGLFSGLSNPFIVGRYHSLVIEKDTFPSDELEVTAWTEDGLVMAA 179

Query:   131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 169
             RH+KYKH+QGVQFHPESIITTEGKTIVRNFIK++ +K++
Sbjct:   180 RHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIVEKKDS 218

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2826077 AT1G25083 [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 137/159 (86%), Positives = 151/159 (94%)

Query:    11 RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
             RKNPRGVLISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGGKIVRSP GV
Sbjct:    60 RKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGV 119

Query:    71 MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
             MHGKSS+V+YDEKGE+GL +GLSNPF  GRYHSLVIEK++FPSD LEVTAWTEDGL+MAA
Sbjct:   120 MHGKSSMVHYDEKGEEGLFSGLSNPFIVGRYHSLVIEKDTFPSDELEVTAWTEDGLVMAA 179

Query:   131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 169
             RH+KYKH+QGVQFHPESIITTEGKTIVRNFIK++ +K++
Sbjct:   180 RHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIVEKKDS 218

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2825965 AT1G25155 [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 137/159 (86%), Positives = 151/159 (94%)

Query:    11 RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
             RKNPRGVLISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGGKIVRSP GV
Sbjct:    60 RKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGV 119

Query:    71 MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
             MHGKSS+V+YDEKGE+GL +GLSNPF  GRYHSLVIEK++FPSD LEVTAWTEDGL+MAA
Sbjct:   120 MHGKSSMVHYDEKGEEGLFSGLSNPFIVGRYHSLVIEKDTFPSDELEVTAWTEDGLVMAA 179

Query:   131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 169
             RH+KYKH+QGVQFHPESIITTEGKTIVRNFIK++ +K++
Sbjct:   180 RHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIVEKKDS 218

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

TAIR|locus:2174378 AT5G57890 [Arabidopsis thaliana (taxid:3702)]

 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 137/159 (86%), Positives = 150/159 (94%)

Query:    11 RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
             RK PRG+LISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGGKIVRSP GV
Sbjct:   111 RKKPRGLLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGV 170

Query:    71 MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
             MHGKSS+V+YDEKGE+GL +GLSNPF  GRYHSLVIEK+SFPSD LEVTAWTEDGL+MAA
Sbjct:   171 MHGKSSMVHYDEKGEEGLFSGLSNPFLVGRYHSLVIEKDSFPSDELEVTAWTEDGLVMAA 230

Query:   131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 169
             RH+KYKH+QGVQFHPESIITTEGKTIVRNFIK++ +KE+
Sbjct:   231 RHRKYKHIQGVQFHPESIITTEGKTIVRNFIKLVEKKES 269

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0000162 "tryptophan biosynthetic process" evidence=TAS

GO:0004049 "anthranilate synthase activity" evidence=IGI

GO:0009617 "response to bacterium" evidence=IEP

TIGR_CMR|BA_0069 BA_0069 "para-aminobenzoate synthase glutamine amidotransferase, component II" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 72/149 (48%), Positives = 108/149 (72%)

Query:    14 PRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHG 73
             P  ++ISPGP +P ++GIS+  +      +P+FGVC+G Q I + FGG++VR+   +MHG
Sbjct:    44 PDFLMISPGPCSPNEAGISMDVIRYFAGKIPIFGVCLGHQSIAQVFGGEVVRAER-LMHG 102

Query:    74 KSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHK 133
             K+S +++D K    + + + NPFTA RYHSL+++KE+ P D LEVT+WTE+G IMA RH 
Sbjct:   103 KTSPMHHDGKT---IFSDIPNPFTATRYHSLIVKKETLP-DCLEVTSWTEEGEIMALRHT 158

Query:   134 KYKHLQGVQFHPESIITTEGKTIVRNFIK 162
                 ++GVQFHPESI+T+ GK +++NFI+
Sbjct:   159 TLP-IEGVQFHPESIMTSHGKELLQNFIR 186

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=ISS

UNIPROTKB|Q74AH3 trpG "Anthranilate synthase, glutamine amidotransferase subunit" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 74/150 (49%), Positives = 106/150 (70%)

Query:    14 PRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHG 73
             PR ++ISPGP +P+++GIS+  +      +P+ GVC+G Q IG AFGG +VRS   +MHG
Sbjct:    44 PRRLVISPGPCSPEEAGISVAAIRHFAGKIPILGVCLGHQSIGAAFGGTVVRSST-LMHG 102

Query:    74 KSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHK 133
             K+S ++++  G+ GL  GL NPF A RYHSLV+E+ S P D LE+TAW E+G IM   H+
Sbjct:   103 KTSPIHHN--GQ-GLFRGLPNPFNATRYHSLVVERASLP-DCLEITAWVEEGEIMGLAHR 158

Query:   134 KYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
             +   + GVQFHPESI+T  G  ++RNF+++
Sbjct:   159 ELP-VWGVQFHPESILTEGGMDLLRNFLEI 187

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004049 "anthranilate synthase activity" evidence=ISS

TIGR_CMR|GSU_2382 GSU_2382 "anthranilate synthase component II" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 74/150 (49%), Positives = 106/150 (70%)

Query:    14 PRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHG 73
             PR ++ISPGP +P+++GIS+  +      +P+ GVC+G Q IG AFGG +VRS   +MHG
Sbjct:    44 PRRLVISPGPCSPEEAGISVAAIRHFAGKIPILGVCLGHQSIGAAFGGTVVRSST-LMHG 102

Query:    74 KSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHK 133
             K+S ++++  G+ GL  GL NPF A RYHSLV+E+ S P D LE+TAW E+G IM   H+
Sbjct:   103 KTSPIHHN--GQ-GLFRGLPNPFNATRYHSLVVERASLP-DCLEITAWVEEGEIMGLAHR 158

Query:   134 KYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
             +   + GVQFHPESI+T  G  ++RNF+++
Sbjct:   159 ELP-VWGVQFHPESILTEGGMDLLRNFLEI 187

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004049 "anthranilate synthase activity" evidence=ISS

UNIPROTKB|Q5LRH9 trpG "Anthranilate synthase component II" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 77/153 (50%), Positives = 101/153 (66%)

Query:    13 NPRGVLISPGPGAPQDSGISLQTVLELGPT-VPLFGVCMGLQCIGEAFGGKIVRSPLGVM 71
             NP G+L+SPGP  P  +GI L        T  PL GVC+G Q IG+AFGGK+VR    ++
Sbjct:    43 NPAGILLSPGPCDPDQAGICLALTEAAAETRTPLLGVCLGHQTIGQAFGGKVVRCH-EIV 101

Query:    72 HGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAAR 131
             HGK   +++  KG   L AGL +PF A RYHSLV+E++S P D LEVTAW EDG IM  +
Sbjct:   102 HGKMGQMHHSAKG---LFAGLPSPFEATRYHSLVVERDSLP-DCLEVTAWLEDGTIMGLQ 157

Query:   132 HKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 164
             HK+   + GVQFHPESI +  G  ++RNF+ ++
Sbjct:   158 HKELP-IHGVQFHPESIASEHGHALLRNFLDVM 189

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004049 "anthranilate synthase activity" evidence=ISS

TIGR_CMR|CHY_1586 CHY_1586 "para-aminobenzoate/anthranilate synthase glutamine amidotransferase, component II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 73/149 (48%), Positives = 104/149 (69%)

Query:    14 PRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHG 73
             P  ++ISPGP  P ++GISL  V      +P+ GVC+G Q IG+AFGGK+++  + V HG
Sbjct:    44 PTHIIISPGPCTPNEAGISLDVVRFFAGKIPILGVCLGHQVIGQAFGGKVIQDKIPV-HG 102

Query:    74 KSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHK 133
             K+SL+Y+D  G+ G+  GL NPF A RYHSLV+EKE  P + + +TA T +G IM  RH+
Sbjct:   103 KTSLIYHD--GQ-GIYKGLPNPFRATRYHSLVVEKEGLPQELI-ITATTAEGTIMGIRHR 158

Query:   134 KYKHLQGVQFHPESIITTEGKTIVRNFIK 162
              +  ++GVQFHPESI+T  GK ++ NF++
Sbjct:   159 TWA-IEGVQFHPESIMTEYGKELLLNFLE 186

GO:0004049 "anthranilate synthase activity" evidence=ISS

GO:0006760 "folic acid-containing compound metabolic process" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.1.3.27	0.914
3rd Layer	4.1.3	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
PLN02335	222	PLN02335, PLN02335, anthranilate synthase	1e-121
PRK05670	189	PRK05670, PRK05670, anthranilate synthase componen	9e-76
cd01743	184	cd01743, GATase1_Anthranilate_Synthase, Type 1 glu	8e-70
CHL00101	190	CHL00101, trpG, anthranilate synthase component 2	9e-70
COG0512	191	COG0512, PabA, Anthranilate/para-aminobenzoate syn	1e-68
PRK14607	534	PRK14607, PRK14607, bifunctional glutamine amidotr	1e-56
PRK07649	195	PRK07649, PRK07649, para-aminobenzoate/anthranilat	1e-55
PRK07765	214	PRK07765, PRK07765, para-aminobenzoate synthase co	3e-53
pfam00117	186	pfam00117, GATase, Glutamine amidotransferase clas	8e-52
TIGR00566	188	TIGR00566, trpG_papA, glutamine amidotransferase o	9e-48
PRK08007	187	PRK08007, PRK08007, para-aminobenzoate synthase co	9e-48
PRK06774	191	PRK06774, PRK06774, para-aminobenzoate synthase co	2e-45
PRK08857	193	PRK08857, PRK08857, para-aminobenzoate synthase co	6e-45
PRK13566	720	PRK13566, PRK13566, anthranilate synthase; Provisi	1e-43
TIGR01815	717	TIGR01815, TrpE-clade3, anthranilate synthase, alp	5e-33
PRK09522	531	PRK09522, PRK09522, bifunctional glutamine amidotr	2e-26
PRK06895	190	PRK06895, PRK06895, putative anthranilate synthase	3e-24
TIGR00888	188	TIGR00888, guaA_Nterm, GMP synthase (glutamine-hyd	3e-20
TIGR01823	742	TIGR01823, PabB-fungal, aminodeoxychorismate synth	5e-20
cd01742	181	cd01742, GATase1_GMP_Synthase, Type 1 glutamine am	6e-20
PLN02889	918	PLN02889, PLN02889, oxo-acid-lyase/anthranilate sy	8e-19
PRK00074	511	PRK00074, guaA, GMP synthase; Reviewed	5e-18
PRK05637	208	PRK05637, PRK05637, anthranilate synthase componen	2e-17
PRK00758	184	PRK00758, PRK00758, GMP synthase subunit A; Valida	1e-16
cd01744	178	cd01744, GATase1_CPSase, Small chain of the glutam	9e-16
TIGR01368	358	TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synt	5e-14
cd01741	188	cd01741, GATase1_1, Subgroup of proteins having th	2e-13
PRK12838	354	PRK12838, PRK12838, carbamoyl phosphate synthase s	3e-13
COG0518	198	COG0518, GuaA, GMP synthase - Glutamine amidotrans	1e-12
PLN02771	415	PLN02771, PLN02771, carbamoyl-phosphate synthase (	2e-11
cd01745	189	cd01745, GATase1_2, Subgroup of proteins having th	7e-11
COG0505	368	COG0505, CarA, Carbamoylphosphate synthase small s	9e-11
PRK12564	360	PRK12564, PRK12564, carbamoyl phosphate synthase s	1e-10
COG2071	243	COG2071, COG2071, Predicted glutamine amidotransfe	2e-10
CHL00197	382	CHL00197, carA, carbamoyl-phosphate synthase argin	6e-09
PLN02347	536	PLN02347, PLN02347, GMP synthetase	2e-08
PRK09065	237	PRK09065, PRK09065, glutamine amidotransferase; Pr	9e-08
pfam07722	219	pfam07722, Peptidase_C26, Peptidase C26	1e-07
TIGR01855	196	TIGR01855, IMP_synth_hisH, imidazole glycerol phos	3e-06
COG0118	204	COG0118, HisH, Glutamine amidotransferase [Amino a	3e-04
PRK13141	205	PRK13141, hisH, imidazole glycerol phosphate synth	0.002
PRK08250	235	PRK08250, PRK08250, glutamine amidotransferase; Pr	0.002
PRK13152	201	PRK13152, hisH, imidazole glycerol phosphate synth	0.004
PRK13143	200	PRK13143, hisH, imidazole glycerol phosphate synth	0.004

>gnl|CDD|177969 PLN02335, PLN02335, anthranilate synthase

 Score =  339 bits (871), Expect = e-121
 Identities = 141/159 (88%), Positives = 151/159 (94%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
           RKNPRGVLISPGPG PQDSGISLQTVLELGP VPLFGVCMGLQCIGEAFGGKIVRSP GV
Sbjct: 60  RKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGV 119

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
           MHGKSS V+YDEKGE+GL +GL NPFTAGRYHSLVIEK++FPSD LEVTAWTEDGLIMAA
Sbjct: 120 MHGKSSPVHYDEKGEEGLFSGLPNPFTAGRYHSLVIEKDTFPSDELEVTAWTEDGLIMAA 179

Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 169
           RH+KYKH+QGVQFHPESIITTEGKTIVRNFIK+I +KE+
Sbjct: 180 RHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIIEKKES 218

Length = 222

>gnl|CDD|235552 PRK05670, PRK05670, anthranilate synthase component II; Provisional

 Score =  224 bits (573), Expect = 9e-76
 Identities = 81/153 (52%), Positives = 109/153 (71%), Gaps = 6/153 (3%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
             NP  +++SPGPG P ++GISL+ + E    VP+ GVC+G Q IGEAFGGK+VR+   +
Sbjct: 41  ALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCLGHQAIGEAFGGKVVRAK-EI 99

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
           MHGK+S + +D     G+ AGL NPFT  RYHSLV+++ES P D LEVTAWT+DG IM  
Sbjct: 100 MHGKTSPIEHDGS---GIFAGLPNPFTVTRYHSLVVDRESLP-DCLEVTAWTDDGEIMGV 155

Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
           RHK+   + GVQFHPESI+T  G  ++ NF+++
Sbjct: 156 RHKELP-IYGVQFHPESILTEHGHKLLENFLEL 187

Length = 189

>gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

 Score =  208 bits (533), Expect = 8e-70
 Identities = 82/157 (52%), Positives = 105/157 (66%), Gaps = 6/157 (3%)

Query: 5   YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIV 64
            L      NP  ++ISPGPG P+D+GISL+ +  L   VP+ GVC+G Q I EAFGGK+V
Sbjct: 34  TLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVV 93

Query: 65  RSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED 124
           R+P   MHGK+S +++D     GL  GL  PFT GRYHSLV++ +  P D LEVTA TED
Sbjct: 94  RAP-EPMHGKTSEIHHDGS---GLFKGLPQPFTVGRYHSLVVDPDPLP-DLLEVTASTED 148

Query: 125 GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 161
           G+IMA RH+      GVQFHPESI+T  G  ++ NF+
Sbjct: 149 GVIMALRHRDLPI-YGVQFHPESILTEYGLRLLENFL 184

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the presence of phosphoribosyl-anthranilate transferase (PRTase) activity. PRTase catalyses the second step in tryptophan biosynthesis and results in the addition of 5-phosphoribosyl-1-pyrophosphate to anthranilate to create N-5'-phosphoribosyl-anthranilate. In E.coli, the first step in the conversion of chorismate to PABA involves two proteins: PabA and PabB which co-operate to transfer the amide nitrogen of glutamine to chorismate forming 4-amino-4 deoxychorismate (ADC). PabA acts as a glutamine amidotransferase, supplying an amino group to PabB, which carries out the amination reaction. A third protein PabC then mediates elimination of pyruvate and aromatization to give PABA. Several organisms have bipartite proteins containing fused domains homologous to PabA and PabB commonly called PABA synthases. These hybrid PABA synthases may produce ADC and not PABA. Length = 184

>gnl|CDD|214365 CHL00101, trpG, anthranilate synthase component 2

 Score =  209 bits (533), Expect = 9e-70
 Identities = 87/149 (58%), Positives = 112/149 (75%), Gaps = 5/149 (3%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMH 72
           N R ++ISPGPG P+DSGISL  +    P +P+ GVC+G Q IG  FGGKI+++P   MH
Sbjct: 43  NIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKAP-KPMH 101

Query: 73  GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARH 132
           GK+S +Y++    D L  GL NPFTA RYHSL+I+  + PS  LE+TAWTEDGLIMA RH
Sbjct: 102 GKTSKIYHNH---DDLFQGLPNPFTATRYHSLIIDPLNLPSP-LEITAWTEDGLIMACRH 157

Query: 133 KKYKHLQGVQFHPESIITTEGKTIVRNFI 161
           KKYK L+G+QFHPES++TT G+ I+RNF+
Sbjct: 158 KKYKMLRGIQFHPESLLTTHGQQILRNFL 186

Length = 190

>gnl|CDD|223586 COG0512, PabA, Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

 Score =  206 bits (526), Expect = 1e-68
 Identities = 80/152 (52%), Positives = 106/152 (69%), Gaps = 7/152 (4%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMH 72
            P  ++ISPGPG P+D+GISL+ +      +P+ GVC+G Q I EAFGGK+VR+    MH
Sbjct: 45  KPDAIVISPGPGTPKDAGISLELIRRFAGRIPILGVCLGHQAIAEAFGGKVVRAKE-PMH 103

Query: 73  GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIMAAR 131
           GK+S++ +D     GL AGL NPFT  RYHSLV++ E+ P + LEVTA +EDG +IMA R
Sbjct: 104 GKTSIITHDGS---GLFAGLPNPFTVTRYHSLVVDPETLPEE-LEVTAESEDGGVIMAVR 159

Query: 132 HKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
           HKK     GVQFHPESI+T  G  I+ NF+++
Sbjct: 160 HKKLPIY-GVQFHPESILTEYGHRILENFLRL 190

Length = 191

>gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

 Score =  185 bits (472), Expect = 1e-56
 Identities = 76/151 (50%), Positives = 106/151 (70%), Gaps = 6/151 (3%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
             NP  ++ISPGPG P+++GIS++ +      VP+ GVC+G Q IG AFGGKIV +   +
Sbjct: 42  ALNPSHIVISPGPGRPEEAGISVEVIRHFSGKVPILGVCLGHQAIGYAFGGKIVHAKR-I 100

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
           +HGK+S + ++ K   GL  G+ NP  A RYHSLV+E+ S P + LEVTA ++DG IM  
Sbjct: 101 LHGKTSPIDHNGK---GLFRGIPNPTVATRYHSLVVEEASLP-ECLEVTAKSDDGEIMGI 156

Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFI 161
           RHK++  + GVQFHPESI+T EGK I++NF+
Sbjct: 157 RHKEH-PIFGVQFHPESILTEEGKRILKNFL 186

Length = 534

>gnl|CDD|181066 PRK07649, PRK07649, para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

 Score =  173 bits (440), Expect = 1e-55
 Identities = 74/158 (46%), Positives = 112/158 (70%), Gaps = 6/158 (3%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMH 72
            P  ++ISPGP +P ++GIS++ +      +P+FGVC+G Q I + FGG++VR+   +MH
Sbjct: 43  KPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGVCLGHQSIAQVFGGEVVRAER-LMH 101

Query: 73  GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARH 132
           GK+SL+++D K    + + + NPFTA RYHSL+++KE+ P D LEVT+WTE+G IMA RH
Sbjct: 102 GKTSLMHHDGK---TIFSDIPNPFTATRYHSLIVKKETLP-DCLEVTSWTEEGEIMAIRH 157

Query: 133 KKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAA 170
           K    ++GVQFHPESI+T+ GK +++NFI+       +
Sbjct: 158 KTLP-IEGVQFHPESIMTSHGKELLQNFIRKYSPSVTS 194

Length = 195

>gnl|CDD|181107 PRK07765, PRK07765, para-aminobenzoate synthase component II; Provisional

 Score =  168 bits (427), Expect = 3e-53
 Identities = 71/147 (48%), Positives = 97/147 (65%), Gaps = 7/147 (4%)

Query: 16  GVLISPGPGAPQDSGISLQTVLELGPT-VPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGK 74
           GVL+SPGPG P+ +G S+  V        PL GVC+G Q IG AFG  + R+P  ++HGK
Sbjct: 49  GVLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAP-ELLHGK 107

Query: 75  SSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKK 134
           +S V++   G   +LAGL +PFTA RYHSL I  E+ P   LEVTA T+ G+IMA RH++
Sbjct: 108 TSSVHHTGVG---VLAGLPDPFTATRYHSLTILPETLP-AELEVTARTDSGVIMAVRHRE 163

Query: 135 YKHLQGVQFHPESIITTEGKTIVRNFI 161
              + GVQFHPES++T  G  ++ N++
Sbjct: 164 LP-IHGVQFHPESVLTEGGHRMLANWL 189

Length = 214

>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I

 Score =  163 bits (415), Expect = 8e-52
 Identities = 65/153 (42%), Positives = 96/153 (62%), Gaps = 7/153 (4%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVM 71
           NP G++ISPGPG+P   G +++ + EL    +P+ G+C+G Q +  AFGGK++++     
Sbjct: 40  NPDGIIISPGPGSPGALGGAIEAIKELRENKIPILGICLGHQLLALAFGGKVIKAKKEPH 99

Query: 72  HGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAAR 131
           HGK+S V +D+    GL  GL N F   RYHS  ++ ++ P   LEVTA +E+G IMA R
Sbjct: 100 HGKNSPVGHDK----GLFYGLPNVFIVRRYHSYAVDPDTLPDG-LEVTAASENGGIMAIR 154

Query: 132 HKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 164
           HK+   + GVQFHPES +T  G  ++ NF   +
Sbjct: 155 HKENP-IFGVQFHPESSLTPGGPELLFNFFIKL 186

Length = 186

>gnl|CDD|233027 TIGR00566, trpG_papA, glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

 Score =  153 bits (388), Expect = 9e-48
 Identities = 69/150 (46%), Positives = 98/150 (65%), Gaps = 7/150 (4%)

Query: 14  PRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHG 73
           P  ++ISPGP  P ++GISL+ +      +P+ GVC+G Q +G+AFGG +VR+   VMHG
Sbjct: 44  PLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGVCLGHQAMGQAFGGDVVRAN-TVMHG 102

Query: 74  KSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARH 132
           K+S + ++     G+  GL NP TA RYHSLV+E E+ P     VTAW  E+  IMA RH
Sbjct: 103 KTSEIEHNGA---GIFRGLFNPLTATRYHSLVVEPETLP-TCFPVTAWEEENIEIMAIRH 158

Query: 133 KKYKHLQGVQFHPESIITTEGKTIVRNFIK 162
           +    L+GVQFHPESI++ +G  ++ NF+ 
Sbjct: 159 RD-LPLEGVQFHPESILSEQGHQLLANFLH 187

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the PFAM model GATase. Length = 188

>gnl|CDD|181194 PRK08007, PRK08007, para-aminobenzoate synthase component II; Provisional

 Score =  153 bits (387), Expect = 9e-48
 Identities = 68/150 (45%), Positives = 101/150 (67%), Gaps = 6/150 (4%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMH 72
            P+ ++ISPGP  P ++GISL  +      +P+ GVC+G Q + +AFGGK+VR+   VMH
Sbjct: 43  KPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAA-KVMH 101

Query: 73  GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARH 132
           GK+S + ++ +   G+  GL+NP T  RYHSLV+E +S P    EVTAW+E   IM  RH
Sbjct: 102 GKTSPITHNGE---GVFRGLANPLTVTRYHSLVVEPDSLP-ACFEVTAWSETREIMGIRH 157

Query: 133 KKYKHLQGVQFHPESIITTEGKTIVRNFIK 162
           +++  L+GVQFHPESI++ +G  ++ NF+ 
Sbjct: 158 RQWD-LEGVQFHPESILSEQGHQLLANFLH 186

Length = 187

>gnl|CDD|180689 PRK06774, PRK06774, para-aminobenzoate synthase component II; Provisional

 Score =  147 bits (373), Expect = 2e-45
 Identities = 67/156 (42%), Positives = 98/156 (62%), Gaps = 10/156 (6%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
           +  P  ++ISPGP  P ++GISL  +      +P+ GVC+G Q +G+AFG ++VR+   V
Sbjct: 41  QLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGVCLGHQALGQAFGARVVRAR-QV 99

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE-DGL--- 126
           MHGK+S + +  +   G+  GL+ P T  RYHSLVI  +S P    E+TAW+E  G    
Sbjct: 100 MHGKTSAICHSGQ---GVFRGLNQPLTVTRYHSLVIAADSLP-GCFELTAWSERGGEMDE 155

Query: 127 IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 162
           IM  RH+    L+GVQFHPESI++ +G  ++ NF+K
Sbjct: 156 IMGIRHRTLP-LEGVQFHPESILSEQGHQLLDNFLK 190

Length = 191

>gnl|CDD|181566 PRK08857, PRK08857, para-aminobenzoate synthase component II; Provisional

 Score =  146 bits (370), Expect = 6e-45
 Identities = 67/154 (43%), Positives = 98/154 (63%), Gaps = 11/154 (7%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMH 72
           NP  ++ISPGP  P ++GISLQ +      +P+ GVC+G Q I + FGG++VR+   VMH
Sbjct: 43  NPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCLGHQAIAQVFGGQVVRAR-QVMH 101

Query: 73  GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE--DGL---I 127
           GK+S + +  +    +  GL+NP T  RYHSLV++ ++ P +  E+TAWTE  DG    I
Sbjct: 102 GKTSPIRHTGR---SVFKGLNNPLTVTRYHSLVVKNDTLP-ECFELTAWTELEDGSMDEI 157

Query: 128 MAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 161
           M  +HK    ++ VQFHPESI T +G  ++ NF+
Sbjct: 158 MGFQHKTLP-IEAVQFHPESIKTEQGHQLLANFL 190

Length = 193

>gnl|CDD|237429 PRK13566, PRK13566, anthranilate synthase; Provisional

 Score =  153 bits (388), Expect = 1e-43
 Identities = 72/158 (45%), Positives = 89/158 (56%), Gaps = 20/158 (12%)

Query: 11  RKNPRGVLISPGPGAPQDSGIS--LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPL 68
           R NP  V++SPGPG P D      +   L     +P+FGVC+GLQ I EAFGG+     L
Sbjct: 567 RVNPDLVVLSPGPGRPSDFDCKATIDAALARN--LPIFGVCLGLQAIVEAFGGE-----L 619

Query: 69  GV----MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED 124
           G     MHGK S +    +G   L +GL   FT GRYHSL  + E+ P + L VTA TED
Sbjct: 620 GQLAYPMHGKPSRIRV--RGPGRLFSGLPEEFTVGRYHSLFADPETLPDE-LLVTAETED 676

Query: 125 GLIMAARHKKYKHLQGVQFHPESIITTEGK---TIVRN 159
           G+IMA  HK    +  VQFHPESI+T  G     I+ N
Sbjct: 677 GVIMAIEHKTLP-VAAVQFHPESIMTLGGDVGLRIIEN 713

Length = 720

>gnl|CDD|130874 TIGR01815, TrpE-clade3, anthranilate synthase, alpha proteobacterial clade

 Score =  123 bits (309), Expect = 5e-33
 Identities = 68/163 (41%), Positives = 94/163 (57%), Gaps = 6/163 (3%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
            + P  V++SPGPG P D  ++      L   +P+FGVC+GLQ + EAFGG +   P   
Sbjct: 557 ERRPDLVVLSPGPGRPADFDVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLPEP- 615

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
           +HGK+S +     G D L AGL    T GRYHSL   ++  P++ L VTA + DGLIMA 
Sbjct: 616 VHGKASRIRV--LGPDALFAGLPERLTVGRYHSLFARRDRLPAE-LTVTAESADGLIMAI 672

Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAADSQ 173
            H++   L  VQFHPESI+T +G   +   I  +V + AA + 
Sbjct: 673 EHRRLP-LAAVQFHPESIMTLDGGAGLA-MIGNVVDRLAAGAL 713

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate [Amino acid biosynthesis, Aromatic amino acid family]. Length = 717

>gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

 Score =  103 bits (259), Expect = 2e-26
 Identities = 55/142 (38%), Positives = 85/142 (59%), Gaps = 10/142 (7%)

Query: 12  KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVM 71
            NP  +++SPGPG P ++G   + +  L   +P+ G+C+G Q I EA+GG + ++   ++
Sbjct: 48  SNPV-LMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG-EIL 105

Query: 72  HGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAAR 131
           HGK+S + +D +    + AGL+NP    RYHSLV    S     L + A   +G++MA R
Sbjct: 106 HGKASSIEHDGQ---AMFAGLTNPLPVARYHSLV---GSNIPAGLTINA-HFNGMVMAVR 158

Query: 132 HKKYKHLQGVQFHPESIITTEG 153
           H     + G QFHPESI+TT+G
Sbjct: 159 HDA-DRVCGFQFHPESILTTQG 179

Length = 531

>gnl|CDD|235882 PRK06895, PRK06895, putative anthranilate synthase component II; Provisional

 Score = 92.9 bits (231), Expect = 3e-24
 Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 9/147 (6%)

Query: 17  VLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSS 76
           +LISPGP  P+        +        + GVC+G Q + E FGG++      V HG+  
Sbjct: 47  ILISPGPDVPRAYPQLFAMLERYHQHKSILGVCLGHQTLCEFFGGELYNLN-NVRHGQQR 105

Query: 77  LVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYK 136
            +    +    L  GL   F  G YHS  + +E+FP+  LE+TA  ++ ++MA +HK   
Sbjct: 106 PLK--VRSNSPLFDGLPEEFNIGLYHSWAVSEENFPTP-LEITAVCDENVVMAMQHK--- 159

Query: 137 HLQ--GVQFHPESIITTEGKTIVRNFI 161
            L   GVQFHPES I+  G+ I+RN++
Sbjct: 160 TLPIYGVQFHPESYISEFGEQILRNWL 186

Length = 190

>gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

 Score = 82.7 bits (205), Expect = 3e-20
 Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 14/160 (8%)

Query: 12  KNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG 69
           KNP+G+++S GP +        + + + ELG  VP+ G+C G+Q + +  GG++ R+   
Sbjct: 40  KNPKGIILSGGPSSVYAENAPRADEKIFELG--VPVLGICYGMQLMAKQLGGEVGRAEKR 97

Query: 70  VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYH-SLVIEKESFPSDALEVTAWTEDGLIM 128
             +GK+ L   DE   D L  GL +  T    H   V E      +  +V A +++  + 
Sbjct: 98  -EYGKAELEILDE---DDLFRGLPDESTVWMSHGDKVKE----LPEGFKVLATSDNCPVA 149

Query: 129 AARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKE 168
           A  H++ K + GVQFHPE   T  G  ++ NF+  +   E
Sbjct: 150 AMAHEE-KPIYGVQFHPEVTHTEYGNELLENFVYDVCGCE 188

This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 188

>gnl|CDD|233588 TIGR01823, PabB-fungal, aminodeoxychorismate synthase, fungal clade

 Score = 85.7 bits (212), Expect = 5e-20
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 14/154 (9%)

Query: 17  VLISPGPGAP---QDSGISLQTVLEL--GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVM 71
           +++ PGPG P   QD GI +  + EL     VP+ G+C+G Q +  A G  I R P    
Sbjct: 57  IVVGPGPGNPNNAQDMGI-ISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPT-PK 114

Query: 72  HGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI-MAA 130
           HG+   VY     +  +  GL +   + RYHSL    E   +         E+G+I M+A
Sbjct: 115 HGQ---VYEMHTNDAAIFCGLFS-VKSTRYHSLYANPEGIDTLLPLCLTEDEEGIILMSA 170

Query: 131 RHKKYKHLQGVQFHPESIITTEGK-TIVRNFIKM 163
           + KK     GVQ+HPES  +  G   +V NF+K+
Sbjct: 171 QTKKKPWF-GVQYHPESCCSELGSGKLVSNFLKL 203

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate. Length = 742

>gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

 Score = 81.4 bits (202), Expect = 6e-20
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 20/157 (12%)

Query: 11  RKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIV 64
            KNP+G+++S GP       AP+        + ELG  VP+ G+C G+Q I +A GGK+ 
Sbjct: 39  LKNPKGIILSGGPSSVYEEDAPRVD----PEIFELG--VPVLGICYGMQLIAKALGGKVE 92

Query: 65  RSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED 124
           R        +      +      L  GL +  T    H   + K     +  +V A +++
Sbjct: 93  RGD----KREYGKAEIEIDDSSPLFEGLPDEQTVWMSHGDEVVK---LPEGFKVIASSDN 145

Query: 125 GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 161
             + A  +++ K + GVQFHPE   T +GK I++NF+
Sbjct: 146 CPVAAIANEEKK-IYGVQFHPEVTHTEKGKEILKNFL 181

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 181

>gnl|CDD|215481 PLN02889, PLN02889, oxo-acid-lyase/anthranilate synthase

 Score = 82.6 bits (204), Expect = 8e-19
 Identities = 63/205 (30%), Positives = 94/205 (45%), Gaps = 59/205 (28%)

Query: 17  VLISPGPGAP---QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHG 73
           ++ISPGPG+P    D GI L+ +LE    +P+ GVC+G Q +G   G +IV +P  V HG
Sbjct: 135 IVISPGPGSPTCPADIGICLRLLLEC-RDIPILGVCLGHQALGYVHGARIVHAPEPV-HG 192

Query: 74  KSSLVYYD-EKGEDGLLAGLSNPFTAGRYHSLVIEKESFP-----------SDALEV--- 118
           + S + ++  +  D + +G ++ F   RYHSLVI+ ES P           SD L     
Sbjct: 193 RLSEIEHNGCRLFDDIPSGRNSGFKVVRYHSLVIDAESLPKELVPIAWTSSSDTLSFLES 252

Query: 119 ------------------------------TAWT-------EDG-LIMAARHKKYKHLQG 140
                                         T+W        ++G ++M   H    H  G
Sbjct: 253 QKSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRPHY-G 311

Query: 141 VQFHPESIITTEGKTIVRNFIKMIV 165
           +QFHPESI T  G+ I +NF ++  
Sbjct: 312 LQFHPESIATCYGRQIFKNFREITQ 336

Length = 918

>gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed

 Score = 79.7 bits (198), Expect = 5e-18
 Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 26/163 (15%)

Query: 11  RKNPRGVLISPGP------GAPQ-DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 63
             NP+G+++S GP      GAP+ D  I      ELG  VP+ G+C G+Q +    GGK+
Sbjct: 44  AFNPKGIILSGGPASVYEEGAPRADPEI-----FELG--VPVLGICYGMQLMAHQLGGKV 96

Query: 64  VRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEK--ESFPSDALEVTAW 121
            R+     +G++ L   +   +  L  GL         H   + +  E F     +V A 
Sbjct: 97  ERAGKR-EYGRAEL---EVDNDSPLFKGLPEEQDVWMSHGDKVTELPEGF-----KVIAS 147

Query: 122 TEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 164
           TE+  I A  +++ +   GVQFHPE   T +GK ++ NF+  I
Sbjct: 148 TENCPIAAIANEE-RKFYGVQFHPEVTHTPQGKKLLENFVFDI 189

Length = 511

>gnl|CDD|180178 PRK05637, PRK05637, anthranilate synthase component II; Provisional

 Score = 75.7 bits (186), Expect = 2e-17
 Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 16/163 (9%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMH 72
           NP  + +SPGPG P+D+G  +  +      +PL G+C+G Q + E  GGK+   P G +H
Sbjct: 44  NPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGICLGFQALLEHHGGKV--EPCGPVH 101

Query: 73  GKSSLVYYDEKGEDG-LLAGLS------NPFTAG------RYHSLVIEKESFPSDALEVT 119
           G +  +   + G    + AGL+      +P   G      RYHSL         ++L   
Sbjct: 102 GTTDNMILTDAGVQSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCVVAPDGMESLGTC 161

Query: 120 AWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 162
           +     +IMAA     K + G+QFHPES+++  G  I+   ++
Sbjct: 162 SSEIGPVIMAAETTDGKAI-GLQFHPESVLSPTGPIILSRCVE 203

Length = 208

>gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated

 Score = 73.3 bits (181), Expect = 1e-16
 Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 11/153 (7%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
           +    G+++S GP   + +G   + + EL   VP+ G+C+G Q I +AFGG++ R     
Sbjct: 39  KAFEDGLILSGGPDI-ERAGNCPEYLKELD--VPILGICLGHQLIAKAFGGEVGRGE--- 92

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
            +G+ +LV  +   ED +L GL         H+   E +  P    E+ A ++   + A 
Sbjct: 93  -YGEYALVEVEILDEDDILKGLPPEIRVWASHA--DEVKELPDG-FEILARSDICEVEAM 148

Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
           +HK+ K + GVQFHPE   T  G+ I +NF+++
Sbjct: 149 KHKE-KPIYGVQFHPEVAHTEYGEEIFKNFLEI 180

Length = 184

>gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

 Score = 70.6 bits (174), Expect = 9e-16
 Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 28/144 (19%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG-- 69
           +P G+ +S GPG P     +++TV + LG  +P+FG+C+G Q +  A G K  +   G  
Sbjct: 39  DPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKMKFGHR 98

Query: 70  -----VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-E 123
                V    +  VY                 T+ + H   ++ +S P   LEVT     
Sbjct: 99  GSNHPVKDLITGRVYI----------------TS-QNHGYAVDPDSLPGG-LEVTHVNLN 140

Query: 124 DGLIMAARHKKYKHLQGVQFHPES 147
           DG +   RHK       VQFHPE+
Sbjct: 141 DGTVEGIRHKDLPVF-SVQFHPEA 163

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is a heterodimer consisting of two polypeptide chains referred to as the small and large subunit. Ammonia an intermediate during the biosynthesis of carbomyl phosphate produced by the hydrolysis of glutamine in the small subunit of the enzyme is delivered via a molecular tunnel between the remotely located carboxyphosphate active site in the large subunit. CPSase IIs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. This group also contains the sequence from the mammalian urea cycle form which has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I. Length = 178

>gnl|CDD|233378 TIGR01368, CPSaseIIsmall, carbamoyl-phosphate synthase, small subunit

 Score = 68.4 bits (168), Expect = 5e-14
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 26/143 (18%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG--- 69
           NP G+ +S GPG P     +++T+ +L   +P+FG+C+G Q +  AFG K  +   G   
Sbjct: 214 NPDGIFLSNGPGDPAAVKPAIETIRKLLEKIPIFGICLGHQLLALAFGAKTYKMKFGHRG 273

Query: 70  ----VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-ED 124
               V    +  V                  T+ + H   ++ +S P+  LEVT     D
Sbjct: 274 GNHPVKDLITGRVE----------------ITS-QNHGYAVDPDSLPAGDLEVTHVNLND 316

Query: 125 GLIMAARHKKYKHLQGVQFHPES 147
           G +   RHK    +  VQ+HPE+
Sbjct: 317 GTVEGIRHKDLP-VFSVQYHPEA 338

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 358

>gnl|CDD|153212 cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 20/132 (15%)

Query: 33  LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGL 92
           ++  L  G   P+ G+C+G Q +  A GGK+ R+P G   G   +   +    D L AGL
Sbjct: 74  IRQALAAG--KPVLGICLGHQLLARALGGKVGRNPKGWEIGWFPVTLTEAGKADPLFAGL 131

Query: 93  SNPFTAGRYHSLVIEKESF---PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESII 149
            + F    +H      ++    P  A  + A +E     A R    + L G+QFHPE   
Sbjct: 132 PDEFPVFHWH-----GDTVVELPPGA-VLLASSEACPNQAFR-YGDRAL-GLQFHPE--- 180

Query: 150 TTEGKTIVRNFI 161
               + ++RNF+
Sbjct: 181 ----ERLLRNFL 188

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 188

>gnl|CDD|183784 PRK12838, PRK12838, carbamoyl phosphate synthase small subunit; Reviewed

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 12/135 (8%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMH 72
           NP G+++S GPG P++    L  + +L  + P+ G+C+G Q I  A G    + P G   
Sbjct: 208 NPDGIVLSNGPGDPKELQPYLPEIKKLISSYPILGICLGHQLIALALGADTEKLPFG-HR 266

Query: 73  GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAAR 131
           G +  V     G           +   + H  V++++S     L V  +   DG I   R
Sbjct: 267 GANHPVIDLTTG---------RVWMTSQNHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLR 317

Query: 132 HKKYKHLQGVQFHPE 146
           HKK   +  VQFHPE
Sbjct: 318 HKKKP-VLSVQFHPE 331

Length = 354

>gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 23/167 (13%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLEL-----GPTVPLFGVCMGLQCIGEAFGGKIVRSP 67
           +P G++IS GP +  D    L    +L      P  P+ G+C+G Q + +A GGK+ R P
Sbjct: 45  SPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVERGP 104

Query: 68  LGVMHGKSSLVYYDEKGEDGLLAGLSNPF-TAGRYHSLVIEKESF---PSDALEVTAWTE 123
              + G + +     +G+D L AGL + F T    H      ++    P  A  V A +E
Sbjct: 105 KREI-GWTPV--ELTEGDDPLFAGLPDLFTTVFMSHG-----DTVVELPEGA-VVLASSE 155

Query: 124 DGLIMAARHKKYKHLQGVQFHPESIITTE-GKTIVRNFIKMIVRKEA 169
                A R+   K   GVQFHPE  +T E G+ ++ NF   I  +E 
Sbjct: 156 TCPNQAFRYG--KRAYGVQFHPE--VTHEYGEALLENFAHEICGEEP 198

Length = 198

>gnl|CDD|178370 PLN02771, PLN02771, carbamoyl-phosphate synthase (glutamine-hydrolyzing)

 Score = 61.1 bits (148), Expect = 2e-11
 Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 11/135 (8%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMH 72
            P GVL S GPG P     +++TV EL   VP+FG+CMG Q +G+A GGK  +   G  H
Sbjct: 281 KPDGVLFSNGPGDPSAVPYAVETVKELLGKVPVFGICMGHQLLGQALGGKTFKMKFG-HH 339

Query: 73  GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARH 132
           G +  V  +  G   + A         + H+  ++  S P   +EVT    +    A   
Sbjct: 340 GGNHPVRNNRTGRVEISA---------QNHNYAVDPASLPE-GVEVTHVNLNDGSCAGLA 389

Query: 133 KKYKHLQGVQFHPES 147
               ++  +Q+HPE+
Sbjct: 390 FPALNVMSLQYHPEA 404

Length = 415

>gnl|CDD|153216 cd01745, GATase1_2, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

 Score = 58.0 bits (141), Expect = 7e-11
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 32/104 (30%)

Query: 43  VPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYH 102
            P+ G+C G+Q +  A GG + +  + V                               H
Sbjct: 101 KPILGICRGMQLLNVALGGTLYQD-IRV----------------------------NSLH 131

Query: 103 SLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPE 146
              I++    +D L V A   DG+I A        + GVQ+HPE
Sbjct: 132 HQAIKR---LADGLRVEARAPDGVIEAIESPDRPFVLGVQWHPE 172

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 189

>gnl|CDD|223579 COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

 Score = 58.7 bits (143), Expect = 9e-11
 Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 28/144 (19%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIVRSPLG-- 69
           NP G+ +S GPG P     +++T+ EL G  +P+FG+C+G Q +  A G K  +   G  
Sbjct: 220 NPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKMKFGHR 279

Query: 70  -----VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-E 123
                V    +  VY                 T+ + H   ++++S     L+VT     
Sbjct: 280 GANHPVKDLDTGRVY----------------ITS-QNHGYAVDEDSLVET-LKVTHVNLN 321

Query: 124 DGLIMAARHKKYKHLQGVQFHPES 147
           DG +   RHK       VQ+HPE+
Sbjct: 322 DGTVEGIRHKDLP-AFSVQYHPEA 344

Length = 368

>gnl|CDD|237139 PRK12564, PRK12564, carbamoyl phosphate synthase small subunit; Reviewed

 Score = 58.2 bits (142), Expect = 1e-10
 Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 32/146 (21%)

Query: 13  NPRGVLISPGPGAPQ--DSGISL-QTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG 69
           NP GV +S GPG P   D  I + + +LE    +P+FG+C+G Q +  A G K  +   G
Sbjct: 218 NPDGVFLSNGPGDPAALDYAIEMIRELLEKK--IPIFGICLGHQLLALALGAKTYKMKFG 275

Query: 70  -------VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAW- 121
                  V   ++  V                  T+ + H   ++++S P++ LEVT   
Sbjct: 276 HRGANHPVKDLETGKVE----------------ITS-QNHGFAVDEDSLPAN-LEVTHVN 317

Query: 122 TEDGLIMAARHKKYKHLQGVQFHPES 147
             DG +   RHK       VQ+HPE+
Sbjct: 318 LNDGTVEGLRHKDLPAF-SVQYHPEA 342

Length = 360

>gnl|CDD|224982 COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 21/140 (15%)

Query: 37  LELGPTVPLFGVCMGLQCIGEAFGGKIVR---SPLGVM-HGKSSLVYYD------EKGED 86
           LE G  +P+ G+C GLQ +  A GG + +      G + H + + V+ +      E G  
Sbjct: 104 LERG--IPILGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEPG-- 159

Query: 87  GLLAGLSN--PFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFH 144
             LA +     F    +H   I+K +     L V A   DG + A   K    + GVQ+H
Sbjct: 160 SKLAKILGESEFMVNSFHHQAIKKLA---PGLVVEARAPDGTVEAVEVKNDAFVLGVQWH 216

Query: 145 PESIITTEG--KTIVRNFIK 162
           PE ++ T      +   F+ 
Sbjct: 217 PEYLVDTNPLSLALFEAFVN 236

Length = 243

>gnl|CDD|214392 CHL00197, carA, carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

 Score = 53.6 bits (129), Expect = 6e-09
 Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 29/144 (20%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVM 71
            P G+L+S GPG P      ++TV + L   +P+FG+CMG Q +  A   K  +   G  
Sbjct: 233 QPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEAKTFKLKFG-- 290

Query: 72  HGKSSLVYYDEKGEDGLLAGLSNPFTAGRY-------HSLVIEKESFPSDALEVTAWT-E 123
           H                  GL++P    +        H   +  ES   +   +T +   
Sbjct: 291 H-----------------RGLNHPSGLNQQVEITSQNHGFAVNLESLAKNKFYITHFNLN 333

Query: 124 DGLIMAARHKKYKHLQGVQFHPES 147
           DG +    H   K    VQ+HPE+
Sbjct: 334 DGTVAGISHSP-KPYFSVQYHPEA 356

Length = 382

>gnl|CDD|215197 PLN02347, PLN02347, GMP synthetase

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 14/155 (9%)

Query: 13  NPRGVLISPGP------GAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 66
           NPR V++S GP      GAP           E G  VP+ G+C G+Q I +  GG+ V+ 
Sbjct: 53  NPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERG--VPVLGICYGMQLIVQKLGGE-VKP 109

Query: 67  PLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGL 126
                +G+  +          L   L +  T   + S   E    P +  EV A +  G 
Sbjct: 110 GEKQEYGRMEI---RVVCGSQLFGDLPSGETQTVWMSHGDEAVKLP-EGFEVVAKSVQGA 165

Query: 127 IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 161
           ++A  +++ + + G+Q+HPE   + +G   +R+F+
Sbjct: 166 VVAIENRE-RRIYGLQYHPEVTHSPKGMETLRHFL 199

Length = 536

>gnl|CDD|181635 PRK09065, PRK09065, glutamine amidotransferase; Provisional

 Score = 49.6 bits (119), Expect = 9e-08
 Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 7/105 (6%)

Query: 43  VPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYH 102
           +PL G+C G Q +  A GG++  +P G   G  ++  +    +D L AGL   F A   H
Sbjct: 89  MPLLGICYGHQLLAHALGGEVGYNPAGRESGTVTVELHPAAADDPLFAGLPAQFPAHLTH 148

Query: 103 -SLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPE 146
              V+     P  A+ +    +D    A R+    H  GVQFHPE
Sbjct: 149 LQSVLR---LPPGAVVLARSAQDP-HQAFRYG--PHAWGVQFHPE 187

Length = 237

>gnl|CDD|219535 pfam07722, Peptidase_C26, Peptidase C26

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 29/116 (25%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 43  VPLFGVCMGLQCIGEAFGGKI---VRSPLGVMHGKSSLVYYDEKG------EDGLLAGL- 92
            P+ G+C G+Q +  A GG +   +    G       L                LLA L 
Sbjct: 107 KPILGICRGMQLLNVALGGTLYQDIPEHPGNSDHHHQLAVQYAPSHAVSLEPGSLLARLL 166

Query: 93  -SNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQ-GVQFHPE 146
            +        H   I++    +  L V A   DG I A       +   GVQ+HPE
Sbjct: 167 GAEEILVNSLHHQAIKR---LAPGLRVEATAPDGTIEAIESPNAPYFVLGVQWHPE 219

These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C terminus. Length = 219

>gnl|CDD|233601 TIGR01855, IMP_synth_hisH, imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 38/175 (21%), Positives = 62/175 (35%), Gaps = 45/175 (25%)

Query: 17  VLISPGPGAPQD-------SGISLQTVLELGPTVPLFGVCMGLQCI---GEAFGGKIVRS 66
            LI PG GA          +G+ L   L +    P+ G+C+G+Q +    E  GG     
Sbjct: 39  KLILPGVGAFGAAMARLRENGLDLFVELVVRLGKPVLGICLGMQLLFERSEEGGGV---P 95

Query: 67  PLGVMHGKSSLV-----------YYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDA 115
            LG++ G    +                 E  LL G+         HS            
Sbjct: 96  GLGLIKGNVVKLEARKVPHMGWNEVHPVKESPLLNGIDEGAYFYFVHSYYAV-------- 147

Query: 116 LEVTAWTEDGLIMAARHK-------KYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
                  E+ ++  A +        +  ++ G QFHPE    T G  ++ NF+++
Sbjct: 148 -----CEEEAVLAYADYGEKFPAAVQKGNIFGTQFHPEKSGKT-GLKLLENFLEL 196

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6 [Amino acid biosynthesis, Histidine family]. Length = 196

>gnl|CDD|223196 COG0118, HisH, Glutamine amidotransferase [Amino acid transport and metabolism]

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 33/143 (23%)

Query: 42  TVPLFGVCMGLQCIGEA------------FGGKIVR---SPLGVMH-GKSSLVYYDEKGE 85
             P  G+C+G+Q + E               GK+VR     L V H G + +   +    
Sbjct: 74  GKPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGWNQV---EFVRG 130

Query: 86  DGLLAGLSNPFTAGRY----HSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGV 141
             L  G+ +    G Y    HS  +     P +   V A T+ G    A   K  ++ G 
Sbjct: 131 HPLFKGIPD----GAYFYFVHSYYVP----PGNPETVVATTDYGEPFPAAVAK-DNVFGT 181

Query: 142 QFHPESIITTEGKTIVRNFIKMI 164
           QFHPE      G  +++NF++ I
Sbjct: 182 QFHPEKSGKA-GLKLLKNFLEWI 203

Length = 204

>gnl|CDD|237288 PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional

 Score = 37.4 bits (88), Expect = 0.002
 Identities = 46/147 (31%), Positives = 64/147 (43%), Gaps = 44/147 (29%)

Query: 44  PLFGVCMGLQCI---GEAFG---------GKIVR----SPLGVMH-GKSSLVYYDEKGED 86
           PL G+C+G+Q +    E FG         G++ R      L V H G + L     K E 
Sbjct: 74  PLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPPEEGLKVPHMGWNQLEL---KKES 130

Query: 87  GLLAGLSNPFTAGRY----HSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGV 141
            LL G+ +    G Y    HS   +    P D   V A T+ G    AA  K   ++ G 
Sbjct: 131 PLLKGIPD----GAYVYFVHSYYAD----PCDEEYVAATTDYGVEFPAAVGKD--NVFGA 180

Query: 142 QFHPE-SIITTEGKT---IVRNFIKMI 164
           QFHPE S     G     I++NF++M+
Sbjct: 181 QFHPEKS-----GDVGLKILKNFVEMV 202

Length = 205

>gnl|CDD|181323 PRK08250, PRK08250, glutamine amidotransferase; Provisional

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 47  GVCMGLQCIGEAFGGKIVRSP 67
           GVC+G Q IGEA G K   SP
Sbjct: 89  GVCLGAQLIGEALGAKYEHSP 109

Length = 235

>gnl|CDD|171876 PRK13152, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional

 Score = 36.4 bits (84), Expect = 0.004
 Identities = 39/182 (21%), Positives = 73/182 (40%), Gaps = 40/182 (21%)

Query: 12  KNPRGV-----LISPGPGAPQDS-----GISLQTVLE---LGPTVPLFGVCMGLQCI--- 55
           KNP+ +     L+ PG G+ +++      +     L+   L    P+ G+C+G+Q     
Sbjct: 30  KNPKDLQKADKLLLPGVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLER 89

Query: 56  GEAFG---------GKIVR----SPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYH 102
           G   G         G++V+      L + H   + +   ++    L  G+         H
Sbjct: 90  GYEGGVCEGLGFIEGEVVKFEEDLNLKIPHMGWNELEILKQSP--LYQGIPEKSDFYFVH 147

Query: 103 SLVIE-KESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 161
           S  ++ K+ F      V+A  + G    A  +K  ++   QFHPE      G  ++ NF 
Sbjct: 148 SFYVKCKDEF------VSAKAQYGHKFVASLQK-DNIFATQFHPEK-SQNLGLKLLENFA 199

Query: 162 KM 163
           ++
Sbjct: 200 RL 201

Length = 201

>gnl|CDD|237289 PRK13143, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 29/141 (20%)

Query: 43  VPLFGVCMGLQCIGEA------------FGGKIVRSPLG--VMH-GKSSLVYYDEKGEDG 87
            P  G+C+G+Q + E+            F G++VR P G  V H G +++       +  
Sbjct: 72  KPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHMGWNTV---KVVKDCP 128

Query: 88  LLAGLSNPFTAGRY--HSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHP 145
           L  G+   +    Y  HS        P D   V A T+ G+   A      ++ G QFHP
Sbjct: 129 LFEGIDGEYV---YFVHSYYAY----PDDEDYVVATTDYGIEFPAAVCN-DNVFGTQFHP 180

Query: 146 ESIITTEGKTIVRNFIKMIVR 166
           E    T G  I+ NF+++I R
Sbjct: 181 EKSGET-GLKILENFVELIKR 200

Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
PLN02335	222	anthranilate synthase	100.0
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	100.0
PRK08007	187	para-aminobenzoate synthase component II; Provisio	100.0
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	100.0
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	100.0
PRK05670	189	anthranilate synthase component II; Provisional	100.0
CHL00101	190	trpG anthranilate synthase component 2	100.0
PRK06774	191	para-aminobenzoate synthase component II; Provisio	100.0
PRK06895	190	putative anthranilate synthase component II; Provi	100.0
PRK05637	208	anthranilate synthase component II; Provisional	100.0
PRK08857	193	para-aminobenzoate synthase component II; Provisio	100.0
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	100.0
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	100.0
PRK07765	214	para-aminobenzoate synthase component II; Provisio	100.0
KOG0026	223	consensus Anthranilate synthase, beta chain [Amino	100.0
PRK00758	184	GMP synthase subunit A; Validated	100.0
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	100.0
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	100.0
PLN02347	536	GMP synthetase	100.0
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	100.0
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	100.0
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	100.0
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	100.0
PRK00074	511	guaA GMP synthase; Reviewed	99.98
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	99.98
PRK09065	237	glutamine amidotransferase; Provisional	99.98
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	99.97
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	99.97
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	99.97
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	99.97
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	99.97
PRK13566	720	anthranilate synthase; Provisional	99.97
PRK07567	242	glutamine amidotransferase; Provisional	99.97
PRK05665	240	amidotransferase; Provisional	99.97
COG2071	243	Predicted glutamine amidotransferases [General fun	99.97
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	99.97
PLN02889	918	oxo-acid-lyase/anthranilate synthase	99.97
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	99.96
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	99.96
PRK08250	235	glutamine amidotransferase; Provisional	99.96
PRK06490	239	glutamine amidotransferase; Provisional	99.96
PRK07053	234	glutamine amidotransferase; Provisional	99.96
PRK06186	229	hypothetical protein; Validated	99.95
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	99.95
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	99.95
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	99.95
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	99.95
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	99.94
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	99.94
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	99.94
KOG1622	552	consensus GMP synthase [Nucleotide transport and m	99.94
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	99.94
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	99.94
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	99.94
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	99.94
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	99.94
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	99.94
PRK05380	533	pyrG CTP synthetase; Validated	99.93
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	99.93
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	99.93
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	99.93
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	99.93
PLN02327	557	CTP synthase	99.93
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	99.92
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	99.92
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	99.92
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	99.92
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	99.89
PRK05368	302	homoserine O-succinyltransferase; Provisional	99.89
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	99.88
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	99.87
PLN02617	538	imidazole glycerol phosphate synthase hisHF	99.87
KOG1224	767	consensus Para-aminobenzoate (PABA) synthase ABZ1	99.87
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	99.86
KOG2387	585	consensus CTP synthase (UTP-ammonia lyase) [Nucleo	99.84
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	99.84
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	99.82
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	99.76
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	99.69
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	99.67
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	99.65
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.63
KOG1559	340	consensus Gamma-glutamyl hydrolase [Coenzyme trans	99.62
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	99.54
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	99.53
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	99.53
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	99.39
cd03131	175	GATase1_HTS Type 1 glutamine amidotransferase (GAT	99.32
PF04204	298	HTS: Homoserine O-succinyltransferase ; InterPro:	99.28
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	99.22
TIGR01001	300	metA homoserine O-succinyltransferase. The apparen	99.17
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	99.02
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	99.0
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	98.95
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	98.94
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	98.69
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	98.5
PHA03366	1304	FGAM-synthase; Provisional	98.48
COG1897	307	MetA Homoserine trans-succinylase [Amino acid tran	98.48
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	98.47
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	98.38
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	98.35
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	98.08
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	97.89
PRK00784	488	cobyric acid synthase; Provisional	97.87
TIGR00313	475	cobQ cobyric acid synthase CobQ.	97.86
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	97.83
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	97.75
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	97.7
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	97.64
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	97.59
KOG1907	1320	consensus Phosphoribosylformylglycinamidine syntha	97.58
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	97.55
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	97.54
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	97.54
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	97.45
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	97.43
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	97.39
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	97.23
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	97.15
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	97.08
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	97.08
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	97.03
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	97.03
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	96.89
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	96.79
PRK04155	287	chaperone protein HchA; Provisional	96.69
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	96.64
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	96.6
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	96.59
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	96.56
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	96.56
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	96.49
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	96.4
COG3442	250	Predicted glutamine amidotransferase [General func	96.35
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	95.83
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	95.29
KOG2764	247	consensus Putative transcriptional regulator DJ-1	94.17
PRK11249	752	katE hydroperoxidase II; Provisional	93.06
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	92.61
COG4090	154	Uncharacterized protein conserved in archaea [Func	92.04
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	90.99
PF09897	147	DUF2124: Uncharacterized protein conserved in arch	88.83
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	88.17
COG4977	328	Transcriptional regulator containing an amidase do	86.51
PLN02884	411	6-phosphofructokinase	86.51
cd00363	338	PFK Phosphofructokinase, a key regulatory enzyme i	84.71
PF06283	217	ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.	84.32
PTZ00286	459	6-phospho-1-fructokinase; Provisional	83.56
TIGR02477	539	PFKA_PPi diphosphate--fructose-6-phosphate 1-phosp	81.35
PRK00561	259	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	80.91
PRK07085	555	diphosphate--fructose-6-phosphate 1-phosphotransfe	80.84
PRK06555	403	pyrophosphate--fructose-6-phosphate 1-phosphotrans	80.64
PRK14072	416	6-phosphofructokinase; Provisional	80.57
PRK06830	443	diphosphate--fructose-6-phosphate 1-phosphotransfe	80.54
PF09075	48	STb_secrete: Heat-stable enterotoxin B, secretory;	80.39
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	80.35
PRK04761	246	ppnK inorganic polyphosphate/ATP-NAD kinase; Revie	80.18

>PLN02335 anthranilate synthase

Probab=100.00  E-value=5.1e-40  Score=247.25  Aligned_cols=165  Identities=85%  Similarity=1.363  Sum_probs=142.5

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      .+++..+++|+|||+|||+++++.+...+.+++.+.++|+||||+|||+|+.++||++.+.+.+..+|.+.++.......
T Consensus        55 ~~~~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGIClG~QlLa~alGg~v~~~~~~~~~G~~~~v~~~~~~~  134 (222)
T PLN02335         55 VEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEKGE  134 (222)
T ss_pred             HHHHHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEecHHHHHHHHHhCCEEEeCCCccccCceeeeEECCCCC
Confidence            34555668999999999999998877777777778889999999999999999999999987656688888777665446


Q ss_pred             CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626           86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV  165 (174)
Q Consensus        86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~  165 (174)
                      +++|.+++..+.++++|+++++++++++..++++|+++++.|+++++++++++||+|||||+..+++|..||+||++.+.
T Consensus       135 ~~Lf~~l~~~~~v~~~H~~~v~~~~lp~~~~~v~a~~~~~~v~ai~~~~~~~i~GvQfHPE~~~~~~g~~i~~nF~~~~~  214 (222)
T PLN02335        135 EGLFSGLPNPFTAGRYHSLVIEKDTFPSDELEVTAWTEDGLIMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIIE  214 (222)
T ss_pred             ChhhhCCCCCCEEEechhheEecccCCCCceEEEEEcCCCCEEEEEecCCCCEEEEEeCCCCCCChhHHHHHHHHHHHHH
Confidence            78999999999999999999986666655599999999999999999988779999999999888999999999999887


Q ss_pred             HHHHh
Q 030626          166 RKEAA  170 (174)
Q Consensus       166 ~~~~~  170 (174)
                      ++++.
T Consensus       215 ~~~~~  219 (222)
T PLN02335        215 KKESE  219 (222)
T ss_pred             hhccc
Confidence            66554

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=6.5e-39  Score=230.50  Aligned_cols=150  Identities=53%  Similarity=0.950  Sum_probs=134.7

Q ss_pred             HHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCC
Q 030626            8 SYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDG   87 (174)
Q Consensus         8 ~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~   87 (174)
                      ++.+.++|+||||+|||+|.+.+...+.|++...++|+||||+|||.|++++||+|.+.+ ...||....+...   .+.
T Consensus        40 ~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~~~~~~PiLGVCLGHQai~~~fGg~V~~a~-~~~HGK~s~i~h~---g~~  115 (191)
T COG0512          40 LIEALKPDAIVISPGPGTPKDAGISLELIRRFAGRIPILGVCLGHQAIAEAFGGKVVRAK-EPMHGKTSIITHD---GSG  115 (191)
T ss_pred             HHhhcCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECccHHHHHHHhCCEEEecC-CCcCCeeeeeecC---Ccc
Confidence            567778999999999999999999999999888889999999999999999999999998 4568988744432   578


Q ss_pred             cccCCCCceeecccccceecccCCCCCCcEEEEEcCC-CceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHH
Q 030626           88 LLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED-GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM  163 (174)
Q Consensus        88 l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~-~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~  163 (174)
                      +|+++++++.+.-+|+..+.+++++ +.++++|+++| +.|+|++++++| ++|+|||||...++.|.+|++||++.
T Consensus       116 iF~glp~~f~v~RYHSLvv~~~~lP-~~l~vtA~~~d~~~IMai~h~~~p-i~gvQFHPESilT~~G~~il~Nfl~~  190 (191)
T COG0512         116 LFAGLPNPFTVTRYHSLVVDPETLP-EELEVTAESEDGGVIMAVRHKKLP-IYGVQFHPESILTEYGHRILENFLRL  190 (191)
T ss_pred             cccCCCCCCEEEeeEEEEecCCCCC-CceEEEEEeCCCCEEEEEeeCCCC-EEEEecCCccccccchHHHHHHHHhh
Confidence            9999999999999999999876654 89999999966 599999999998 99999999999999999999999975

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=100.00  E-value=2.4e-38  Score=232.78  Aligned_cols=151  Identities=45%  Similarity=0.870  Sum_probs=129.4

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      .+++...++|+|||+||||++.+.....+.++.+..++|+||||+|||+|+.++||++.+... ..+|.+.++...   .
T Consensus        36 ~~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGIClG~Q~la~a~Gg~v~~~~~-~~~g~~~~v~~~---~  111 (187)
T PRK08007         36 LADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAAK-VMHGKTSPITHN---G  111 (187)
T ss_pred             HHHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEECHHHHHHHHHcCCEEEeCCC-cccCCceEEEEC---C
Confidence            466766789999999999999988766666666678899999999999999999999999874 347766655543   4


Q ss_pred             CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHH
Q 030626           86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK  162 (174)
Q Consensus        86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~  162 (174)
                      +++|++++..+.++++|++.++..+ ++++++++|+++++.++|+++.+++ ++|+|||||+.+++.|..||+||++
T Consensus       112 ~~l~~~~~~~~~v~~~H~~~v~~~~-lp~~~~v~a~~~~~~i~a~~~~~~~-i~GvQfHPE~~~t~~G~~il~nFl~  186 (187)
T PRK08007        112 EGVFRGLANPLTVTRYHSLVVEPDS-LPACFEVTAWSETREIMGIRHRQWD-LEGVQFHPESILSEQGHQLLANFLH  186 (187)
T ss_pred             CCcccCCCCCcEEEEcchhEEccCC-CCCCeEEEEEeCCCcEEEEEeCCCC-EEEEEeCCcccCCcchHHHHHHHhh
Confidence            5689999888999999999996433 5689999999999999999998876 9999999999889999999999986

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=100.00  E-value=7.6e-38  Score=231.27  Aligned_cols=155  Identities=46%  Similarity=0.859  Sum_probs=131.9

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      .+++.+.++|+|||+|||+++++.....+.++....++|+||||+|||+|+.++||+|.+.+. ..+|.+..+..   ..
T Consensus        36 ~~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGIClG~Qlla~~lGg~V~~~~~-~~~G~~~~i~~---~~  111 (195)
T PRK07649         36 ISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGVCLGHQSIAQVFGGEVVRAER-LMHGKTSLMHH---DG  111 (195)
T ss_pred             HHHHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEEcHHHHHHHHHcCCEEeeCCC-cccCCeEEEEE---CC
Confidence            456666789999999999999988776666666677899999999999999999999999874 45777655433   24


Q ss_pred             CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626           86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV  165 (174)
Q Consensus        86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~  165 (174)
                      +++|+++++.+.++++|++.+..++ ++++++++|+++++.++|+++++.+ +||+|||||+..++.|..|++||++.+.
T Consensus       112 ~~lf~~~~~~~~v~~~H~~~v~~~~-lp~~~~~~a~s~~~~v~a~~~~~~~-i~gvQFHPE~~~t~~g~~il~nfl~~~~  189 (195)
T PRK07649        112 KTIFSDIPNPFTATRYHSLIVKKET-LPDCLEVTSWTEEGEIMAIRHKTLP-IEGVQFHPESIMTSHGKELLQNFIRKYS  189 (195)
T ss_pred             ChhhcCCCCCCEEEEechheEeccc-CCCCeEEEEEcCCCcEEEEEECCCC-EEEEEECCCCCCCccHHHHHHHHHHHhH
Confidence            6799999999999999999985333 4689999999999999999999876 9999999999888899999999999775


Q ss_pred             H
Q 030626          166 R  166 (174)
Q Consensus       166 ~  166 (174)
                      .
T Consensus       190 ~  190 (195)
T PRK07649        190 P  190 (195)
T ss_pred             h
Confidence            4

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=100.00  E-value=6e-37  Score=225.58  Aligned_cols=151  Identities=46%  Similarity=0.835  Sum_probs=127.3

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      .+++.+.++|||||+||||++.+.....+.+++...++|+||||+|||+|+.++||++.+.+ ...+|.+..+...   .
T Consensus        36 ~~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGIC~G~Qll~~~~GG~v~~~~-~~~~g~~~~v~~~---~  111 (188)
T TIGR00566        36 LQEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGVCLGHQAMGQAFGGDVVRAN-TVMHGKTSEIEHN---G  111 (188)
T ss_pred             HHHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEECHHHHHHHHHcCCEEeeCC-CccccceEEEEEC---C
Confidence            56777788999999999999987665556666566789999999999999999999999986 4457776666543   4


Q ss_pred             CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCC-ceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHH
Q 030626           86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK  162 (174)
Q Consensus        86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~-~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~  162 (174)
                      ++++.++++.+.++++|++.+.++. ++++++++|+++++ .++|+++++++ +||+|||||+..++.|.+||+||++
T Consensus       112 ~~~~~~l~~~~~v~~~H~~~v~~~~-l~~~~~v~a~s~~~~~v~a~~~~~~~-i~gvQfHPE~~~t~~G~~il~nfl~  187 (188)
T TIGR00566       112 AGIFRGLFNPLTATRYHSLVVEPET-LPTCFPVTAWEEENIEIMAIRHRDLP-LEGVQFHPESILSEQGHQLLANFLH  187 (188)
T ss_pred             CccccCCCCCcEEEEcccceEeccc-CCCceEEEEEcCCCCEEEEEEeCCCC-EEEEEeCCCccCCcccHHHHHHHHh
Confidence            5678888778899999999996433 46789999999875 99999999887 9999999999889999999999985

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>PRK05670 anthranilate synthase component II; Provisional

Probab=100.00  E-value=8.7e-37  Score=225.07  Aligned_cols=152  Identities=52%  Similarity=0.947  Sum_probs=127.7

Q ss_pred             HHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCC
Q 030626            7 VSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGED   86 (174)
Q Consensus         7 ~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~   86 (174)
                      +++..+++|||||+|||+++++.....+.+++...++|+||||+|||+|+.++||++.+.+. ..+|.+.++..   ..+
T Consensus        37 ~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGIClG~Qlla~alGg~v~~~~~-~~~g~~~~v~~---~~~  112 (189)
T PRK05670         37 EEIEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCLGHQAIGEAFGGKVVRAKE-IMHGKTSPIEH---DGS  112 (189)
T ss_pred             HHHHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCEEEecCC-cccCceeEEEe---CCC
Confidence            45556679999999999999887666666666667899999999999999999999998874 34666555542   356


Q ss_pred             CcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHH
Q 030626           87 GLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI  164 (174)
Q Consensus        87 ~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~  164 (174)
                      ++|.+++..+.++++|++.+.+.+ ++++++++|+++++.++|+++++++ +||+|||||+..++++.+||++|++.+
T Consensus       113 ~l~~~~~~~~~v~~~H~~~v~~~~-lp~~~~~la~s~~~~i~a~~~~~~~-~~gvQfHPE~~~~~~g~~i~~~F~~~~  188 (189)
T PRK05670        113 GIFAGLPNPFTVTRYHSLVVDRES-LPDCLEVTAWTDDGEIMGVRHKELP-IYGVQFHPESILTEHGHKLLENFLELA  188 (189)
T ss_pred             chhccCCCCcEEEcchhheecccc-CCCceEEEEEeCCCcEEEEEECCCC-EEEEeeCCCcCCCcchHHHHHHHHHhh
Confidence            799999888999999999995323 4689999999999999999998776 999999999977889999999999864

>CHL00101 trpG anthranilate synthase component 2

Probab=100.00  E-value=1.1e-36  Score=224.56  Aligned_cols=152  Identities=56%  Similarity=1.000  Sum_probs=126.5

Q ss_pred             HHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCC
Q 030626            7 VSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGED   86 (174)
Q Consensus         7 ~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~   86 (174)
                      +++...++|||||+|||+++++.......+.....++|+||||+|||+|+.++||+|.+.+. ..+|.+..+..   ..+
T Consensus        37 ~~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~-~~~g~~~~~~~---~~~  112 (190)
T CHL00101         37 SKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKAPK-PMHGKTSKIYH---NHD  112 (190)
T ss_pred             HHHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEchhHHHHHHHhCCEEEECCC-cccCceeeEee---CCc
Confidence            45555689999999999999876544444444678899999999999999999999999874 34777765543   356


Q ss_pred             CcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHH
Q 030626           87 GLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM  163 (174)
Q Consensus        87 ~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~  163 (174)
                      ++|.+++..+.++++|++.|+..+ ++++++++|+++++.++++++++++++||+|||||+..++.|.+|++||++.
T Consensus       113 ~l~~~~~~~~~v~~~H~~~v~~~~-lp~~~~vla~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~~l~~nf~~~  188 (190)
T CHL00101        113 DLFQGLPNPFTATRYHSLIIDPLN-LPSPLEITAWTEDGLIMACRHKKYKMLRGIQFHPESLLTTHGQQILRNFLSL  188 (190)
T ss_pred             HhhccCCCceEEEcchhheeeccc-CCCceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCccCCChhHHHHHHHHHhh
Confidence            799999988999999999996423 4578999999999999999999865599999999997788999999999874

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=100.00  E-value=1.7e-36  Score=223.91  Aligned_cols=151  Identities=44%  Similarity=0.858  Sum_probs=125.1

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      .+++.++++|+|||+|||+++++.+...+.+++...++|+||||+|||+|+.++||++.+.+. .++|.......   ..
T Consensus        36 ~~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGIC~G~Qlla~~~GG~v~~~~~-~~~G~~~~~~~---~~  111 (191)
T PRK06774         36 LTDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGVCLGHQALGQAFGARVVRARQ-VMHGKTSAICH---SG  111 (191)
T ss_pred             HHHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEECHHHHHHHHHhCCEEEeCCc-ceecceEEEEe---cC
Confidence            567877889999999999999988777677766778899999999999999999999999874 55666554433   35


Q ss_pred             CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCC----ceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHH
Q 030626           86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG----LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI  161 (174)
Q Consensus        86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~----~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~  161 (174)
                      +++|++++..+.++++|++.+...+ ++++++++|+++++    .++++++++.+ +||+|||||+.+++.|.+||+||+
T Consensus       112 ~~lf~~l~~~~~v~~~Hs~~v~~~~-lp~~~~vlA~s~~d~~~~~i~~~~~~~~~-i~GvQfHPE~~~~~~G~~i~~nf~  189 (191)
T PRK06774        112 QGVFRGLNQPLTVTRYHSLVIAADS-LPGCFELTAWSERGGEMDEIMGIRHRTLP-LEGVQFHPESILSEQGHQLLDNFL  189 (191)
T ss_pred             chhhcCCCCCcEEEEeCcceeeccC-CCCCeEEEEEeCCCCCcceEEEEEeCCCC-EEEEEECCCcCCCccHHHHHHHHh
Confidence            6789999888999999999995323 46889999998743    46677877765 999999999988899999999998


Q ss_pred             H
Q 030626          162 K  162 (174)
Q Consensus       162 ~  162 (174)
                      +
T Consensus       190 ~  190 (191)
T PRK06774        190 K  190 (191)
T ss_pred             h
Confidence            5

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=100.00  E-value=1.2e-35  Score=219.13  Aligned_cols=145  Identities=34%  Similarity=0.593  Sum_probs=123.1

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCCcccCC
Q 030626           13 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGL   92 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   92 (174)
                      .+|+|||+|||+++.+.....+.+++...++|+||||+|||+|+.++||+|.+.+. ..+|.+..+...  .++++|+++
T Consensus        43 ~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~-~~~g~~~~v~~~--~~~~l~~~~  119 (190)
T PRK06895         43 NFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGVCLGHQTLCEFFGGELYNLNN-VRHGQQRPLKVR--SNSPLFDGL  119 (190)
T ss_pred             cCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEEcHHHHHHHHHhCCeEeecCC-CccCceEEEEEC--CCChhhhcC
Confidence            58999999999987555555566666677899999999999999999999988763 457777655443  467899999


Q ss_pred             CCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHH
Q 030626           93 SNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK  162 (174)
Q Consensus        93 ~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~  162 (174)
                      ++.+.++++|++.++..+ ++.++.+++.++++.+++++++++| +||+|||||+.+++.|..|++||++
T Consensus       120 ~~~~~v~~~Hs~~v~~~~-lp~~l~~~a~~~~~~i~a~~~~~~p-i~GvQFHPE~~~~~~g~~il~nf~~  187 (190)
T PRK06895        120 PEEFNIGLYHSWAVSEEN-FPTPLEITAVCDENVVMAMQHKTLP-IYGVQFHPESYISEFGEQILRNWLA  187 (190)
T ss_pred             CCceEEEcchhheecccc-cCCCeEEEEECCCCcEEEEEECCCC-EEEEEeCCCcCCCcchHHHHHHHHh
Confidence            999999999999997533 3478999999999999999999877 9999999999889999999999987

>PRK05637 anthranilate synthase component II; Provisional

Probab=100.00  E-value=2.6e-35  Score=219.44  Aligned_cols=154  Identities=31%  Similarity=0.540  Sum_probs=123.9

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEec-cCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD-EKG   84 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~-~~~   84 (174)
                      .+++...++|+|||+|||+++++.....+.++....++||||||+|||+|+.++||++.+..  ..+|.+..+... ...
T Consensus        37 ~~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGIClG~Qlla~alGG~V~~~~--~~~G~~~~i~~~~~~~  114 (208)
T PRK05637         37 VEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGICLGFQALLEHHGGKVEPCG--PVHGTTDNMILTDAGV  114 (208)
T ss_pred             HHHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEEcHHHHHHHHHcCCeeccCC--cccceEEEeEECCCCC
Confidence            46777778999999999999988766555554444589999999999999999999998754  356666544433 233


Q ss_pred             CCCcccCCC------------CceeecccccceecccCCCCCCcEEEEEcCC--C-ceEEEeeCCCCceEEEecCCCCcC
Q 030626           85 EDGLLAGLS------------NPFTAGRYHSLVIEKESFPSDALEVTAWTED--G-LIMAARHKKYKHLQGVQFHPESII  149 (174)
Q Consensus        85 ~~~l~~~~~------------~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~--~-~i~a~~~~~~~~~~g~QfHPE~~~  149 (174)
                      .+++|.+++            .++.++++|++.+..   +|++++++|++++  + .+++++..+.+ +||+|||||...
T Consensus       115 ~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~---lp~~~~vlA~s~~~~~~v~~a~~~~~~~-~~GvQfHPE~~~  190 (208)
T PRK05637        115 QSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCVV---APDGMESLGTCSSEIGPVIMAAETTDGK-AIGLQFHPESVL  190 (208)
T ss_pred             CCcccCCCCcccccccccccCCceEEEEechhhhhc---CCCCeEEEEEecCCCCCEEEEEEECCCC-EEEEEeCCccCc
Confidence            567888775            357899999999986   7799999999765  3 46777887765 999999999999


Q ss_pred             CCchHHHHHHHHHHHH
Q 030626          150 TTEGKTIVRNFIKMIV  165 (174)
Q Consensus       150 ~~~~~~l~~~f~~~~~  165 (174)
                      ++.|..||+||++.+.
T Consensus       191 T~~G~~il~nfl~~~~  206 (208)
T PRK05637        191 SPTGPIILSRCVEQLL  206 (208)
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998764

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=100.00  E-value=4.4e-35  Score=216.60  Aligned_cols=151  Identities=43%  Similarity=0.791  Sum_probs=124.5

Q ss_pred             HHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCC
Q 030626            7 VSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGED   86 (174)
Q Consensus         7 ~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~   86 (174)
                      +++.+.++|+||++|||+++++.....+.++.+..++|+||||+|||+|+.++||++.+.+. .++|....+...   .+
T Consensus        37 ~~~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGIClG~Qlia~a~Gg~v~~~~~-~~~G~~~~~~~~---~~  112 (193)
T PRK08857         37 DGIEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCLGHQAIAQVFGGQVVRARQ-VMHGKTSPIRHT---GR  112 (193)
T ss_pred             HHHhhCCCCEEEEeCCCCChHHCcchHHHHHHhcCCCCEEEEcHHHHHHHHHhCCEEEeCCC-ceeCceEEEEEC---CC
Confidence            44556789999999999999887766666666778999999999999999999999999874 346664444332   56


Q ss_pred             CcccCCCCceeecccccceecccCCCCCCcEEEEEcC--C---CceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHH
Q 030626           87 GLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE--D---GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI  161 (174)
Q Consensus        87 ~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~--~---~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~  161 (174)
                      ++|.+++..+.++++|++.+...+ ++++++++|+++  +   +.|+++++++.| +||+|||||+..++.|.+||+||+
T Consensus       113 ~l~~~~~~~~~v~~~H~~~v~~~~-lp~~~~v~a~s~~~~~~~~~i~~~~~~~~p-i~gvQfHPE~~~t~~g~~i~~nFl  190 (193)
T PRK08857        113 SVFKGLNNPLTVTRYHSLVVKNDT-LPECFELTAWTELEDGSMDEIMGFQHKTLP-IEAVQFHPESIKTEQGHQLLANFL  190 (193)
T ss_pred             cccccCCCccEEEEccEEEEEcCC-CCCCeEEEEEecCcCCCcceEEEEEeCCCC-EEEEeeCCCcCCCcchHHHHHHHH
Confidence            799999888999999999986333 468999999886  4   358899999876 999999999988889999999998


Q ss_pred             HH
Q 030626          162 KM  163 (174)
Q Consensus       162 ~~  163 (174)
                      +.
T Consensus       191 ~~  192 (193)
T PRK08857        191 AR  192 (193)
T ss_pred             hh
Confidence            73

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=100.00  E-value=1.2e-34  Score=212.82  Aligned_cols=142  Identities=56%  Similarity=0.957  Sum_probs=119.2

Q ss_pred             cCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCCcccC
Q 030626           12 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG   91 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~   91 (174)
                      .++||||++||++++.+.......+..+.+++|+||||+|||+|+.++||++.+.+.. .++.+.++...   .+++|.+
T Consensus        41 ~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~~~~-~~g~~~~v~~~---~~~~~~~  116 (184)
T cd01743          41 LNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRAPEP-MHGKTSEIHHD---GSGLFKG  116 (184)
T ss_pred             cCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeCCCC-CcCceeEEEEC---CCccccC
Confidence            4799999999999987765443333345678999999999999999999999988743 45665555443   5678999


Q ss_pred             CCCceeecccccceecccCCCCCC--cEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHH
Q 030626           92 LSNPFTAGRYHSLVIEKESFPSDA--LEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI  161 (174)
Q Consensus        92 ~~~~~~~~~~H~~~v~~~~l~~~~--~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~  161 (174)
                      +++.+.++++|++.++.   ++.+  ++++|.++++.++|++.++++ +||+|||||+.+++.|.+||+||+
T Consensus       117 ~~~~~~~~~~H~~~v~~---~~~~~~~~~la~~~~~~v~a~~~~~~~-i~gvQfHPE~~~~~~g~~l~~~f~  184 (184)
T cd01743         117 LPQPFTVGRYHSLVVDP---DPLPDLLEVTASTEDGVIMALRHRDLP-IYGVQFHPESILTEYGLRLLENFL  184 (184)
T ss_pred             CCCCcEEEeCcEEEEec---CCCCceEEEEEeCCCCeEEEEEeCCCC-EEEEeeCCCcCCCcchHHHHHhhC
Confidence            99899999999999986   4455  999999999999999998876 999999999988999999999995

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=100.00  E-value=1.5e-34  Score=212.99  Aligned_cols=151  Identities=26%  Similarity=0.444  Sum_probs=122.5

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG   84 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~   84 (174)
                      .+++...++|||||+||+++.++... ...++. ...++|+||||+|||+|+.++||++.+.+. .+.| +..+...  .
T Consensus        34 ~~~~~~~~~~glii~Gg~~~~~~~~~-~~~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~~~-~~~g-~~~v~~~--~  108 (188)
T TIGR00888        34 LEEIREKNPKGIILSGGPSSVYAENA-PRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAEK-REYG-KAELEIL--D  108 (188)
T ss_pred             HHHHhhcCCCEEEECCCCCCcCcCCc-hHHHHHHHhCCCCEEEECHHHHHHHHhcCceEecCCC-ccce-eEEEEEe--c
Confidence            45666667789999999999887543 233333 567899999999999999999999998763 3344 3333333  3


Q ss_pred             CCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHH
Q 030626           85 EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI  164 (174)
Q Consensus        85 ~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~  164 (174)
                      .+++|.++++.+.++++|++.+..   ++++++++|+++++.+++++.++++ +||+|||||+..+++|.+||+||++.+
T Consensus       109 ~~~l~~~~~~~~~~~~~H~~~v~~---l~~~~~vla~~~~~~v~a~~~~~~~-~~g~QfHPE~~~~~~g~~i~~~f~~~~  184 (188)
T TIGR00888       109 EDDLFRGLPDESTVWMSHGDKVKE---LPEGFKVLATSDNCPVAAMAHEEKP-IYGVQFHPEVTHTEYGNELLENFVYDV  184 (188)
T ss_pred             CCHhhcCCCCCcEEEeEccceeec---CCCCCEEEEECCCCCeEEEEECCCC-EEEEeeCCccCCChhhHHHHHHHHHHh
Confidence            458999998889999999999976   6789999999999999999998766 999999999987778999999999854


Q ss_pred             H
Q 030626          165 V  165 (174)
Q Consensus       165 ~  165 (174)
                      +
T Consensus       185 ~  185 (188)
T TIGR00888       185 C  185 (188)
T ss_pred             h
Confidence            3

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=100.00  E-value=1.5e-34  Score=216.61  Aligned_cols=147  Identities=48%  Similarity=0.805  Sum_probs=121.6

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCCcccC
Q 030626           13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG   91 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~   91 (174)
                      ++|||||+|||+++.+.....+.+++ .+.++|+||||+|||+|+.++||++.+.+.. .+|....+...   .+.+|.+
T Consensus        46 ~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~~~~-~~g~~~~v~~~---~~~~~~~  121 (214)
T PRK07765         46 QFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPEL-LHGKTSSVHHT---GVGVLAG  121 (214)
T ss_pred             CCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeCCCC-ccCceeEEEEC---CCccccC
Confidence            69999999999998766555556655 5678999999999999999999999987643 34554444443   3458888


Q ss_pred             CCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626           92 LSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV  165 (174)
Q Consensus        92 ~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~  165 (174)
                      ++..+.++++|++.+.+++ ++++++++|+++++.++|++.++.+ +||+|||||+..+..|.+++++|++.|.
T Consensus       122 ~~~~~~v~~~H~~~v~~~~-lp~~~~vla~s~~~~vqa~~~~~~~-i~gvQfHPE~~~t~~g~~~l~~f~~~~~  193 (214)
T PRK07765        122 LPDPFTATRYHSLTILPET-LPAELEVTARTDSGVIMAVRHRELP-IHGVQFHPESVLTEGGHRMLANWLTVCG  193 (214)
T ss_pred             CCCccEEEecchheEeccc-CCCceEEEEEcCCCcEEEEEeCCCC-EEEEeeCCCcccCcchHHHHHHHHHHhc
Confidence            8888999999999996433 4689999999999999999999876 9999999999778899999999998764

>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]

Probab=100.00  E-value=3.3e-34  Score=199.93  Aligned_cols=164  Identities=84%  Similarity=1.350  Sum_probs=152.6

Q ss_pred             hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccC
Q 030626            4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK   83 (174)
Q Consensus         4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~   83 (174)
                      -.+++|.++|+++++|++|||.+.|.+-....++++...+|+||||+|.|.|.++|||++.+......||...++.++..
T Consensus        54 iTV~El~~~NP~~LliSPGPG~P~DsGIs~~~i~~f~~~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~~  133 (223)
T KOG0026|consen   54 LTVEELKRKNPRGLLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEK  133 (223)
T ss_pred             ccHHHHhhcCCCeEEecCCCCCCccccchHHHHHHhCCCCceeeeehhhhhhhhhhCcEEeccCcceeeccccccccCCc
Confidence            35789999999999999999999999988899999999999999999999999999999999886677999988888877


Q ss_pred             CCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHH
Q 030626           84 GEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM  163 (174)
Q Consensus        84 ~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~  163 (174)
                      ....+|+++++.+.+--+|+.....++|+.+.++++|+.+++.|++.+++.|.++-|+|||||...+++|+.+++||++.
T Consensus       134 ~~~G~f~g~~q~~~V~RYHSLa~~~sSlP~d~L~VTawTEnG~iMgaRHkKY~~ieGVQfHPESIlteeGk~~irNflni  213 (223)
T KOG0026|consen  134 GEEGLFSGLSNPFIVGRYHSLVIEKDSFPSDELEVTAWTEDGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKI  213 (223)
T ss_pred             cccccccCCCCCeEEEeeeeeeeecccCCccceeeeEeccCcEEEeeeccccccccceeecchhhhhhhhHHHHHHHHHh
Confidence            77899999999999999999999988888899999999999999999999998899999999999999999999999998


Q ss_pred             HHHH
Q 030626          164 IVRK  167 (174)
Q Consensus       164 ~~~~  167 (174)
                      .++.
T Consensus       214 ~~~t  217 (223)
T KOG0026|consen  214 VEKK  217 (223)
T ss_pred             cccc
Confidence            7653

>PRK00758 GMP synthase subunit A; Validated

Probab=100.00  E-value=2e-33  Score=206.40  Aligned_cols=148  Identities=28%  Similarity=0.434  Sum_probs=115.5

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      .+++.+.. |||||+||+ +..+.....+.++  ..++|+||||+|||+|+.++||++.+.+. ..+|... +...  ..
T Consensus        35 ~~~l~~~~-dgivi~Gg~-~~~~~~~~~~~l~--~~~~PilGIC~G~Q~L~~a~Gg~v~~~~~-~~~g~~~-i~~~--~~  106 (184)
T PRK00758         35 VEEIKAFE-DGLILSGGP-DIERAGNCPEYLK--ELDVPILGICLGHQLIAKAFGGEVGRGEY-GEYALVE-VEIL--DE  106 (184)
T ss_pred             HHHHhhcC-CEEEECCCC-ChhhccccHHHHH--hCCCCEEEEeHHHHHHHHhcCcEEecCCC-ceeeeEE-EEEc--CC
Confidence            34554433 999999998 3322222333333  35799999999999999999999998763 3344432 2222  35


Q ss_pred             CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626           86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV  165 (174)
Q Consensus        86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~  165 (174)
                      +++|.++++.+.++++|++.+..   ++++++++|+++++.++|++.++++ ++|+|||||+..+++|.+||++|++.+.
T Consensus       107 ~~l~~~~~~~~~~~~~H~~~v~~---l~~~~~~la~~~~~~v~a~~~~~~~-~~g~QfHPE~~~~~~g~~l~~~f~~~~~  182 (184)
T PRK00758        107 DDILKGLPPEIRVWASHADEVKE---LPDGFEILARSDICEVEAMKHKEKP-IYGVQFHPEVAHTEYGEEIFKNFLEICG  182 (184)
T ss_pred             ChhhhCCCCCcEEEeehhhhhhh---CCCCCEEEEECCCCCEEEEEECCCC-EEEEEcCCccCCCchHHHHHHHHHHHHc
Confidence            67899998899999999999976   6789999999999999999998765 9999999999877899999999997653

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=100.00  E-value=3e-33  Score=204.88  Aligned_cols=140  Identities=31%  Similarity=0.535  Sum_probs=115.0

Q ss_pred             cCCCEEEeCCCCCCCCCcc--hhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCCcc
Q 030626           12 KNPRGVLISPGPGAPQDSG--ISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLL   89 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~~~~--~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~   89 (174)
                      .++|||||+||++++++..  .+.+.+.  ..++|+||||+|||+|+.++||++.+... .+.|... +..  ...+++|
T Consensus        40 ~~~dgvIl~Gg~~~~~~~~~~~~~~~~~--~~~~PilGIC~G~Qll~~~~gg~v~~~~~-~~~G~~~-v~~--~~~~~l~  113 (181)
T cd01742          40 KNPKGIILSGGPSSVYEEDAPRVDPEIF--ELGVPVLGICYGMQLIAKALGGKVERGDK-REYGKAE-IEI--DDSSPLF  113 (181)
T ss_pred             cCCCEEEECCCcccccccccchhhHHHH--hcCCCEEEEcHHHHHHHHhcCCeEEeCCC-CcceEEE-EEe--cCCChhh
Confidence            4799999999999887653  2223333  34799999999999999999999998763 3344433 322  2467899


Q ss_pred             cCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHH
Q 030626           90 AGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI  161 (174)
Q Consensus        90 ~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~  161 (174)
                      .+++..+.++++|++.+..   ++++++++|+++++.+++++.++++ +||+|||||+..+++|.+||+||+
T Consensus       114 ~~~~~~~~~~~~H~~~v~~---l~~~~~~la~~~~~~i~a~~~~~~~-~~g~QfHPE~~~~~~g~~ll~~f~  181 (181)
T cd01742         114 EGLPDEQTVWMSHGDEVVK---LPEGFKVIASSDNCPVAAIANEEKK-IYGVQFHPEVTHTEKGKEILKNFL  181 (181)
T ss_pred             cCCCCceEEEcchhhhhhh---cCCCcEEEEeCCCCCEEEEEeCCCc-EEEEEcCCccccCcChHHHHHhhC
Confidence            9998889999999999976   6789999999999999999998765 999999999987789999999984

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=100.00  E-value=9.8e-34  Score=208.80  Aligned_cols=149  Identities=32%  Similarity=0.441  Sum_probs=122.4

Q ss_pred             HHHHhcCCCEEEeCCCCCCCCCcchhH----HHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEec
Q 030626            7 VSYCRKNPRGVLISPGPGAPQDSGISL----QTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD   81 (174)
Q Consensus         7 ~~~~~~~~dgiii~GG~~~~~~~~~~~----~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~   81 (174)
                      +++...++|||||+|||.|+++...+.    ..|++ ...++||||||+|||+||.++||+|.+... .+.|.. ++...
T Consensus        39 ~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~~~-~E~G~~-~v~~~  116 (198)
T COG0518          39 EELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVERGPK-REIGWT-PVELT  116 (198)
T ss_pred             ccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEeccCC-CccceE-EEEEe
Confidence            455556789999999999999887443    44554 456778999999999999999999999874 455554 44444


Q ss_pred             cCCCCCcccCCCCce-eecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHH
Q 030626           82 EKGEDGLLAGLSNPF-TAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNF  160 (174)
Q Consensus        82 ~~~~~~l~~~~~~~~-~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f  160 (174)
                      . ..+++|++++... .++++|++.+..   +|++++++|.|+.+.+++++.. . ++||+|||||.+. +.+..+++||
T Consensus       117 ~-~~~~l~~gl~~~~~~v~~sH~D~v~~---lP~g~~vlA~s~~cp~qa~~~~-~-~~~gvQFHpEv~~-~~~~~~l~nf  189 (198)
T COG0518         117 E-GDDPLFAGLPDLFTTVFMSHGDTVVE---LPEGAVVLASSETCPNQAFRYG-K-RAYGVQFHPEVTH-EYGEALLENF  189 (198)
T ss_pred             c-CccccccCCccccCccccchhCcccc---CCCCCEEEecCCCChhhheecC-C-cEEEEeeeeEEeH-HHHHHHHHHh
Confidence            3 3458999998887 599999999987   7899999999999999999998 3 5999999999964 7899999999


Q ss_pred             HHHH
Q 030626          161 IKMI  164 (174)
Q Consensus       161 ~~~~  164 (174)
                      ...+
T Consensus       190 ~~~i  193 (198)
T COG0518         190 AHEI  193 (198)
T ss_pred             hhhh
Confidence            9643

>PLN02347 GMP synthetase

Probab=100.00  E-value=8.9e-33  Score=229.74  Aligned_cols=155  Identities=24%  Similarity=0.382  Sum_probs=125.9

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcch--hHHHHHH--cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEec
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGI--SLQTVLE--LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD   81 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~--~~~~i~~--~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~   81 (174)
                      .+++...++|||||+|||+++++.+.  +...+.+  ...++|+||||+|||+|+.++||+|.+.. ..++|... +.. 
T Consensus        46 ~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~~-~~e~G~~~-v~i-  122 (536)
T PLN02347         46 LDRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGE-KQEYGRME-IRV-  122 (536)
T ss_pred             HHHHhcCCCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEecC-CcccceEE-EEE-
Confidence            56777678999999999999986542  2233332  24579999999999999999999999876 34566554 333 


Q ss_pred             cCCCCCcccCCCCc--eeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHH
Q 030626           82 EKGEDGLLAGLSNP--FTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRN  159 (174)
Q Consensus        82 ~~~~~~l~~~~~~~--~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~  159 (174)
                       ..++++|++++..  ..++++|++.+..   +|++++++|+++++.++++++.+.+ +||+|||||+..++.|..|++|
T Consensus       123 -~~~~~Lf~~l~~~~~~~v~~~Hsd~V~~---lP~g~~vlA~s~~~~iaai~~~~~~-i~GvQFHPE~~~t~~G~~iL~N  197 (536)
T PLN02347        123 -VCGSQLFGDLPSGETQTVWMSHGDEAVK---LPEGFEVVAKSVQGAVVAIENRERR-IYGLQYHPEVTHSPKGMETLRH  197 (536)
T ss_pred             -cCCChhhhcCCCCceEEEEEEEEEEeee---CCCCCEEEEEeCCCcEEEEEECCCC-EEEEEccCCCCccchHHHHHHH
Confidence             2467899999876  7899999999976   6789999999999999999998766 9999999999888999999999


Q ss_pred             HHHHHHHHH
Q 030626          160 FIKMIVRKE  168 (174)
Q Consensus       160 f~~~~~~~~  168 (174)
                      |+..+++..
T Consensus       198 Fl~~ic~~~  206 (536)
T PLN02347        198 FLFDVCGVT  206 (536)
T ss_pred             HHHHHhCcC
Confidence            997666533

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=100.00  E-value=1.6e-33  Score=208.01  Aligned_cols=150  Identities=35%  Similarity=0.593  Sum_probs=121.4

Q ss_pred             hcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCCcc
Q 030626           11 RKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLL   89 (174)
Q Consensus        11 ~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~   89 (174)
                      ..++|||||+||++++++.....+.++. ...++|+||||+|||+|+.++|+++.+.+....++....+....  .+++|
T Consensus        40 ~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~Q~la~~~G~~v~~~~~~~~~g~~~~~~~~~--~~~~~  117 (192)
T PF00117_consen   40 LDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGICLGHQILAHALGGKVVPSPEKPHHGGNIPISETP--EDPLF  117 (192)
T ss_dssp             TTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHHHHHHHHTTHEEEEEESEEEEEEEEEEEEEE--EHGGG
T ss_pred             hcCCCEEEECCcCCccccccccccccccccccceEEEEEeehhhhhHHhcCCccccccccccccccccccccc--ccccc
Confidence            4579999999999999985444455554 45789999999999999999999999876333344444433321  26889


Q ss_pred             cCCCCceeecccccceecccCCCCCCcEEEEEcCCC-ceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHH
Q 030626           90 AGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM  163 (174)
Q Consensus        90 ~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~-~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~  163 (174)
                      .++++.+.++++|++.+.+..+++++++++|+++++ .++++.+.++| ++|+|||||+..+..+..+++||+-.
T Consensus       118 ~~~~~~~~~~~~H~~~v~~~~~~p~~~~~la~s~~~~~~~~~~~~~~~-i~g~QfHPE~~~~~~~~~~l~nf~~~  191 (192)
T PF00117_consen  118 YGLPESFKAYQYHSDAVNPDDLLPEGFEVLASSSDGCPIQAIRHKDNP-IYGVQFHPEFSSSPGGPQLLKNFFLK  191 (192)
T ss_dssp             TTSTSEEEEEEEECEEEEEGHHHHTTEEEEEEETTTTEEEEEEECTTS-EEEESSBTTSTTSTTHHHHHHHHHHH
T ss_pred             cccccccccccccceeeecccccccccccccccccccccccccccccE-EEEEecCCcCCCCCCcchhhhheeEe
Confidence            999999999999999998533346899999999765 89999999876 99999999999888999999999865

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=100.00  E-value=8.8e-33  Score=229.92  Aligned_cols=152  Identities=34%  Similarity=0.640  Sum_probs=126.2

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      .+++...++|+|||+|||+++++.+.....+..+..++||||||+|||+|+.++||+|.+.. ...+|....+..   ..
T Consensus        41 ~~~l~~~~~~~IIlSpGPg~p~d~~~~~~i~~~~~~~iPILGIClG~QlLa~a~GG~V~~~~-~~~~G~~~~i~~---~~  116 (531)
T PRK09522         41 IERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG-EILHGKASSIEH---DG  116 (531)
T ss_pred             HHHHHhcCcCEEEEcCCCCChhhCCCCHHHHHHHhcCCCEEEEcHHHHHHHHhcCCEEEeCC-ceeeeeEEEEee---cC
Confidence            56676778999999999999988765544444466789999999999999999999999875 234555443332   34


Q ss_pred             CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626           86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV  165 (174)
Q Consensus        86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~  165 (174)
                      +++|.+++..+.++.+|++.+..   +|++++++|+ .++.++++++.+.+ +||+|||||+..++.|..|++||++.+.
T Consensus       117 ~~lf~~~~~~~~v~~~Hs~~v~~---lP~~l~vlA~-sd~~v~ai~~~~~~-i~GVQFHPEs~~T~~G~~il~NFl~~~~  191 (531)
T PRK09522        117 QAMFAGLTNPLPVARYHSLVGSN---IPAGLTINAH-FNGMVMAVRHDADR-VCGFQFHPESILTTQGARLLEQTLAWAQ  191 (531)
T ss_pred             CccccCCCCCcEEEEehheeccc---CCCCcEEEEe-cCCCEEEEEECCCC-EEEEEecCccccCcchHHHHHHHHHHHh
Confidence            57899998889999999999976   6799999997 57789999998765 9999999999999999999999998875


Q ss_pred             H
Q 030626          166 R  166 (174)
Q Consensus       166 ~  166 (174)
                      .
T Consensus       192 ~  192 (531)
T PRK09522        192 Q  192 (531)
T ss_pred             h
Confidence            3

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=100.00  E-value=2.2e-32  Score=228.59  Aligned_cols=154  Identities=48%  Similarity=0.830  Sum_probs=130.1

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      .+++...++|+|||+|||+++++.+...+.++.+..++|+||||+|||+|+.++||++.+... ..+|....+...   .
T Consensus        37 ~~~~~~~~~d~vIlsgGP~~p~~~~~~~~li~~~~~~~PvLGIClG~QlLa~a~Gg~V~~~~~-~~~G~~~~v~~~---~  112 (534)
T PRK14607         37 IEEIEALNPSHIVISPGPGRPEEAGISVEVIRHFSGKVPILGVCLGHQAIGYAFGGKIVHAKR-ILHGKTSPIDHN---G  112 (534)
T ss_pred             HHHHHhcCCCEEEECCCCCChhhCCccHHHHHHhhcCCCEEEEcHHHHHHHHHcCCeEecCCc-cccCCceeEEEC---C
Confidence            456666789999999999999887766666666667899999999999999999999999874 346666555433   5


Q ss_pred             CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626           86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV  165 (174)
Q Consensus        86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~  165 (174)
                      +++|.+++..+.++++|++.+.... ++.+++++|+++++.|++++++++| +||+|||||+..+++|.+||+||++.+.
T Consensus       113 ~~lf~~~~~~~~v~~~Hs~~v~~~~-lp~~~~vlA~s~d~~i~a~~~~~~p-i~GvQFHPE~~~t~~g~~i~~nFl~~~~  190 (534)
T PRK14607        113 KGLFRGIPNPTVATRYHSLVVEEAS-LPECLEVTAKSDDGEIMGIRHKEHP-IFGVQFHPESILTEEGKRILKNFLNYQR  190 (534)
T ss_pred             CcchhcCCCCcEEeeccchheeccc-CCCCeEEEEEcCCCCEEEEEECCCC-EEEEEeCCCCCCChhHHHHHHHHHHHhh
Confidence            5789999888899999999986433 4689999999999999999999877 9999999999878899999999999764

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=100.00  E-value=8.4e-32  Score=206.41  Aligned_cols=151  Identities=28%  Similarity=0.369  Sum_probs=112.3

Q ss_pred             CCCEEEeCCCCCCCCC--------cc---h-----hHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCC----ccc
Q 030626           13 NPRGVLISPGPGAPQD--------SG---I-----SLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPL----GVM   71 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~--------~~---~-----~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~----~~~   71 (174)
                      .+||||++||+.++..        ..   .     .++.++. +..++||||||+|||+|+.++||++.+...    ...
T Consensus        61 ~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~~~~~~~~~~~  140 (254)
T PRK11366         61 KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHRKLCEQPELLE  140 (254)
T ss_pred             hCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEeecccccccccc
Confidence            4899999999876521        11   1     1234443 678899999999999999999999998621    111


Q ss_pred             ccc------------cceeEeccCCCCCcccCC-C--CceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCC
Q 030626           72 HGK------------SSLVYYDEKGEDGLLAGL-S--NPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYK  136 (174)
Q Consensus        72 ~~~------------~~~~~~~~~~~~~l~~~~-~--~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~  136 (174)
                      |+.            ...+.+.   +++++..+ +  +.+.++++|++.|..   ++++++++|+++|+.|+|++..+++
T Consensus       141 h~~~~~~~~~~~~~~~h~v~~~---~~s~l~~i~~~~~~~~Vns~H~q~V~~---l~~gl~v~A~s~dg~ieAie~~~~~  214 (254)
T PRK11366        141 HREDPELPVEQQYAPSHEVQVE---EGGLLSALLPECSNFWVNSLHGQGAKV---VSPRLRVEARSPDGLVEAVSVINHP  214 (254)
T ss_pred             cccCCccccccccCCceEEEEC---CCCcHHHhcCCCceEEeehHHHHHHhh---cccceEEEEEcCCCcEEEEEeCCCC
Confidence            211            1222222   33444443 2  467899999999987   7899999999999999999999877


Q ss_pred             ceEEEecCCCCcCCCch--HHHHHHHHHHHHHHHH
Q 030626          137 HLQGVQFHPESIITTEG--KTIVRNFIKMIVRKEA  169 (174)
Q Consensus       137 ~~~g~QfHPE~~~~~~~--~~l~~~f~~~~~~~~~  169 (174)
                      +++|+|||||+..++++  .+||++|++.+.+...
T Consensus       215 ~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~~~~~  249 (254)
T PRK11366        215 FALGVQWHPEWNSSEYALSRILFEGFITACQHHIA  249 (254)
T ss_pred             CEEEEEeCCCcCCCCCchHHHHHHHHHHHHHHHHH
Confidence            67999999999877666  7899999998876554

>PRK00074 guaA GMP synthase; Reviewed

Probab=99.98  E-value=4.7e-32  Score=225.44  Aligned_cols=151  Identities=28%  Similarity=0.476  Sum_probs=124.0

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcch--hHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK   83 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~--~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~   83 (174)
                      .+++...++|||||+||+.++++...  ..+.+  ...++|+||||+|||+|+.++||++.+.. ..+.|... +...  
T Consensus        39 ~~~l~~~~~dgIIlsGGp~sv~~~~~p~~~~~i--~~~~~PvLGIC~G~QlLa~~lGG~V~~~~-~~e~G~~~-i~i~--  112 (511)
T PRK00074         39 AEEIRAFNPKGIILSGGPASVYEEGAPRADPEI--FELGVPVLGICYGMQLMAHQLGGKVERAG-KREYGRAE-LEVD--  112 (511)
T ss_pred             HHHHhccCCCEEEECCCCcccccCCCccccHHH--HhCCCCEEEECHHHHHHHHHhCCeEEecC-CcccceEE-EEEc--
Confidence            46777778899999999999887543  22333  34579999999999999999999999886 34455433 3332  


Q ss_pred             CCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHH
Q 030626           84 GEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM  163 (174)
Q Consensus        84 ~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~  163 (174)
                      .++++|.+++..+.++++|++.+..   ++++++++|+++++.++++++.+.+ +||+|||||++.++.|..||+||+..
T Consensus       113 ~~~~Lf~~l~~~~~v~~~H~d~V~~---lp~g~~vlA~s~~~~v~ai~~~~~~-i~GvQFHPE~~~t~~G~~il~nFl~~  188 (511)
T PRK00074        113 NDSPLFKGLPEEQDVWMSHGDKVTE---LPEGFKVIASTENCPIAAIANEERK-FYGVQFHPEVTHTPQGKKLLENFVFD  188 (511)
T ss_pred             CCChhhhcCCCceEEEEECCeEEEe---cCCCcEEEEEeCCCCEEEEEeCCCC-EEEEeCCCCcCCchhHHHHHHHHHHH
Confidence            3567999998889999999999976   6799999999999999999987766 99999999999888999999999965


Q ss_pred             HHH
Q 030626          164 IVR  166 (174)
Q Consensus       164 ~~~  166 (174)
                      +++
T Consensus       189 i~~  191 (511)
T PRK00074        189 ICG  191 (511)
T ss_pred             hcC
Confidence            543

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=99.98  E-value=1.5e-31  Score=212.57  Aligned_cols=149  Identities=29%  Similarity=0.516  Sum_probs=117.5

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      .+++...++|||||+|||+++.+....++.+++...++|+||||+|||+|+.++||++.+.+.+ .+|...++....  .
T Consensus       207 ~~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~~~PILGIClG~QlLa~a~Gg~v~kl~~g-h~G~nhpV~~~~--~  283 (358)
T TIGR01368       207 AEEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLEKIPIFGICLGHQLLALAFGAKTYKMKFG-HRGGNHPVKDLI--T  283 (358)
T ss_pred             HHHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCceeccCcC-cCCCceeeEECC--C
Confidence            4566667789999999999987665556666653338999999999999999999999998754 355555544321  0


Q ss_pred             CCcccCCCCceeecccccceecccCCCCCCcEEEEEc-CCCceEEEeeCCCCceEEEecCCCCcCCC-chHHHHHHHHHH
Q 030626           86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKM  163 (174)
Q Consensus        86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~a~~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~  163 (174)
                             ...+.+.++|+++|++++++.+++++++++ +|+.|++++++++| ++|+|||||+..++ +...||++|++.
T Consensus       284 -------~~v~itsqnH~~aV~~~~l~~~~l~vta~~~nDg~Vegi~h~~~p-i~gVQfHPE~~~gp~d~~~lF~~F~~~  355 (358)
T TIGR01368       284 -------GRVEITSQNHGYAVDPDSLPAGDLEVTHVNLNDGTVEGIRHKDLP-VFSVQYHPEASPGPHDTEYLFDEFIDL  355 (358)
T ss_pred             -------CcEEEeecCCCcEEcccccCCCceEEEEEECCCCcEEEEEECCCC-EEEEEECCCCCCCCCChHHHHHHHHHH
Confidence                   123456778999998766655789999997 68999999999987 99999999998776 567899999987


Q ss_pred             HH
Q 030626          164 IV  165 (174)
Q Consensus       164 ~~  165 (174)
                      +.
T Consensus       356 ~~  357 (358)
T TIGR01368       356 IK  357 (358)
T ss_pred             hh
Confidence            74

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PRK09065 glutamine amidotransferase; Provisional

Probab=99.98  E-value=1.6e-31  Score=203.07  Aligned_cols=140  Identities=27%  Similarity=0.374  Sum_probs=113.0

Q ss_pred             CCCEEEeCCCCCCCCCcchhH----HHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCC
Q 030626           13 NPRGVLISPGPGAPQDSGISL----QTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDG   87 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~----~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~   87 (174)
                      ++|||||+||+.+.++...++    +.+++ ...++|+||||+|||+|+.++||+|.+.+.+.+.|......+.....++
T Consensus        54 ~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~g~e~G~~~v~~~~~~~~~~  133 (237)
T PRK09065         54 DFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPAGRESGTVTVELHPAAADDP  133 (237)
T ss_pred             hcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHHcCCccccCCCCCccceEEEEEccccccCh
Confidence            689999999999988876654    33443 5578999999999999999999999988755556654444444444678


Q ss_pred             cccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHH
Q 030626           88 LLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK  162 (174)
Q Consensus        88 l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~  162 (174)
                      +|+++++.+.++++|++.+..   +|++++++|+++++.+++++.++  ++||+|||||++     ..+++.|++
T Consensus       134 l~~~~~~~~~v~~~H~d~v~~---lp~~~~~la~s~~~~iqa~~~~~--~i~gvQfHPE~~-----~~~~~~~~~  198 (237)
T PRK09065        134 LFAGLPAQFPAHLTHLQSVLR---LPPGAVVLARSAQDPHQAFRYGP--HAWGVQFHPEFT-----AHIMRAYLR  198 (237)
T ss_pred             hhhcCCccCcEeeehhhhhhh---CCCCCEEEEcCCCCCeeEEEeCC--CEEEEEeCCcCC-----HHHHHHHHH
Confidence            999999999999999999876   67999999999999999999875  499999999974     445555544

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=99.97  E-value=1.7e-31  Score=207.06  Aligned_cols=151  Identities=26%  Similarity=0.520  Sum_probs=127.0

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG   84 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~   84 (174)
                      .+++.++++|||+||.|||+|......+..+++ ++..+|++|||+|||+|+.|+|++..+++.+. +|.+.+++.... 
T Consensus       213 ~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~KmkFGH-rG~NhPV~dl~t-  290 (368)
T COG0505         213 AEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKMKFGH-RGANHPVKDLDT-  290 (368)
T ss_pred             HHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeecccCC-CCCCcCcccccC-
Confidence            578889999999999999999888888888888 56667999999999999999999999999664 676666543211 


Q ss_pred             CCCcccCCCCceeecccccceecccCCCCCCcEEEEEc-CCCceEEEeeCCCCceEEEecCCCCcCCC-chHHHHHHHHH
Q 030626           85 EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIK  162 (174)
Q Consensus        85 ~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~a~~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~  162 (174)
                              .......++|+|+|+++++.... +++..+ .|+.+++++++++| ++++|||||..+++ |...||..|++
T Consensus       291 --------grv~ITSQNHGyaVd~~s~~~~~-~vth~nlnDgTvEGi~h~~~P-~fSVQ~HPEAsPGPhDt~ylFd~Fi~  360 (368)
T COG0505         291 --------GRVYITSQNHGYAVDEDSLVETL-KVTHVNLNDGTVEGIRHKDLP-AFSVQYHPEASPGPHDTRYLFDEFIE  360 (368)
T ss_pred             --------CeEEEEecCCceecChhhcCCCc-eeEEEeCCCCCccceecCCCc-eEEEccCCCCCCCCcccHHHHHHHHH
Confidence                    23467889999999987665444 788877 78999999999988 99999999998887 67899999999


Q ss_pred             HHHHHH
Q 030626          163 MIVRKE  168 (174)
Q Consensus       163 ~~~~~~  168 (174)
                      .+++.+
T Consensus       361 ~~~~~~  366 (368)
T COG0505         361 LMEAAK  366 (368)
T ss_pred             HHHHhh
Confidence            998765

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=99.97  E-value=3.8e-31  Score=210.02  Aligned_cols=150  Identities=29%  Similarity=0.530  Sum_probs=118.6

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      .+++.+.++|||||+|||+++.+....++.+++....+|+||||+|||+|+.++||++.+.+.+ .+|...++.....  
T Consensus       201 ~~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~~PvlGIClG~QlLa~a~Gg~v~kl~~g-h~G~~hpV~~~~~--  277 (354)
T PRK12838        201 LEEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISSYPILGICLGHQLIALALGADTEKLPFG-HRGANHPVIDLTT--  277 (354)
T ss_pred             HHHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcCCCEEEECHHHHHHHHHhCCEEecCCCC-ccCCceEEEECCC--
Confidence            4566667899999999999987776666777663334999999999999999999999988754 3566655544311  


Q ss_pred             CCcccCCCCceeecccccceecccCCCCCCcEEEEEc-CCCceEEEeeCCCCceEEEecCCCCcCCC-chHHHHHHHHHH
Q 030626           86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKM  163 (174)
Q Consensus        86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~a~~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~  163 (174)
                      .       ..+.+.++|++.+.++++...++++++.+ +|+.|+|++++++| +||+|||||+..++ ++..||++|++.
T Consensus       278 ~-------~~~~ts~~H~~aV~~~sl~~~~l~v~a~~~~Dg~Veai~~~~~p-i~gVQfHPE~~~gp~d~~~lF~~F~~~  349 (354)
T PRK12838        278 G-------RVWMTSQNHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKKKP-VLSVQFHPEAHPGPHDAEYIFDEFLEM  349 (354)
T ss_pred             C-------eEEEeccchheEecccccCCCCcEEEEEECCCCeEEEEEECCCC-EEEEEeCCCCCCCCccHHHHHHHHHHH
Confidence            1       23456789999998766554568999975 68999999999987 99999999997766 678999999998


Q ss_pred             HHH
Q 030626          164 IVR  166 (174)
Q Consensus       164 ~~~  166 (174)
                      +.+
T Consensus       350 ~~~  352 (354)
T PRK12838        350 MEK  352 (354)
T ss_pred             HHh
Confidence            864

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=99.97  E-value=1e-30  Score=190.96  Aligned_cols=143  Identities=29%  Similarity=0.529  Sum_probs=108.5

Q ss_pred             HHHHhcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626            7 VSYCRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus         7 ~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      +++...++|||||+||++++.+.....+.+++ ...++|+||||+|+|+|+.++||++.+.+.+ .++...++....  .
T Consensus        33 ~~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~~~~-~~g~~~~v~~~~--~  109 (178)
T cd01744          33 EEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKMKFG-HRGSNHPVKDLI--T  109 (178)
T ss_pred             HHHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECHHHHHHHHHcCCceecCCCC-CCCCceeeEEcC--C
Confidence            34444579999999999988765555555554 5667999999999999999999999886532 244443333221  0


Q ss_pred             CCcccCCCCceeecccccceecccCCCCCCcEEEEEc-CCCceEEEeeCCCCceEEEecCCCCcCCC-chHHHHHHHH
Q 030626           86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFI  161 (174)
Q Consensus        86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~a~~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~  161 (174)
                             ...+.+.++|++.+++++ ++++++++|++ +++.++++++++.+ +||+|||||+..++ +..+||++|+
T Consensus       110 -------~~~~~v~~~H~~~v~~~~-lp~~~~v~a~s~~~~~i~a~~~~~~~-i~GvQfHPE~~~~~~~~~~lf~~f~  178 (178)
T cd01744         110 -------GRVYITSQNHGYAVDPDS-LPGGLEVTHVNLNDGTVEGIRHKDLP-VFSVQFHPEASPGPHDTEYLFDEFL  178 (178)
T ss_pred             -------CCcEEEEcCceEEEcccc-cCCceEEEEEECCCCcEEEEEECCCC-eEEEeeCCCCCCCCCCchHhHhhhC
Confidence                   124567889999997544 45799999997 58899999998877 99999999997664 5678999985

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=99.97  E-value=9.9e-31  Score=223.30  Aligned_cols=150  Identities=43%  Similarity=0.730  Sum_probs=123.0

Q ss_pred             hcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCCcc
Q 030626           11 RKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLL   89 (174)
Q Consensus        11 ~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~   89 (174)
                      ..++|+|||+||||++.+... .+.+.+ +..++|+||||+|||+|+.++||++.+.+. ..+|.+..+...  ..+++|
T Consensus       557 ~~~~DgLILsgGPGsp~d~~~-~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~~~-p~~G~~~~V~~~--~~~~Lf  632 (717)
T TIGR01815       557 ERRPDLVVLSPGPGRPADFDV-AGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLPE-PVHGKASRIRVL--GPDALF  632 (717)
T ss_pred             hcCCCEEEEcCCCCCchhccc-HHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEECCC-CeeCcceEEEEC--CCChhh
Confidence            357999999999999987543 344443 567899999999999999999999999874 357766666543  356899


Q ss_pred             cCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCC---chHHHHHHHHHHHHH
Q 030626           90 AGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITT---EGKTIVRNFIKMIVR  166 (174)
Q Consensus        90 ~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~---~~~~l~~~f~~~~~~  166 (174)
                      .+++..+.++++|++.+.... ++++++++|+++++.++|+++...+ +||+|||||+..+.   .|.+||+||+..+..
T Consensus       633 ~~lp~~~~v~~~HS~~~~~~~-LP~~~~vlA~s~d~~v~Ai~~~~~~-i~GVQFHPEsi~T~sg~~G~~ilkNfl~~~~~  710 (717)
T TIGR01815       633 AGLPERLTVGRYHSLFARRDR-LPAELTVTAESADGLIMAIEHRRLP-LAAVQFHPESIMTLDGGAGLAMIGNVVDRLAA  710 (717)
T ss_pred             hcCCCCCEEEEECCCCccccc-CCCCeEEEEEeCCCcEEEEEECCCC-EEEEEeCCeeCCccCchhHHHHHHHHHHHHhh
Confidence            999999999999999875433 4689999999999999999998876 99999999996553   579999999998863

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=99.97  E-value=1e-30  Score=208.10  Aligned_cols=146  Identities=28%  Similarity=0.512  Sum_probs=114.8

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG   84 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~   84 (174)
                      .+++...++|||||+|||+++.+....++.+++ ...++|+||||+|||+|+.++||++.+.+.+. +|...++..... 
T Consensus       211 ~~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl~~gh-~G~~~pv~~~~~-  288 (360)
T PRK12564        211 AEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKMKFGH-RGANHPVKDLET-  288 (360)
T ss_pred             HHHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCcEeccCCCc-cCCceeeEECCC-
Confidence            456666689999999999998765544555554 44679999999999999999999999987442 455444443210 


Q ss_pred             CCCcccCCCCceeecccccceecccCCCCCCcEEEEEc-CCCceEEEeeCCCCceEEEecCCCCcCCC-chHHHHHHHHH
Q 030626           85 EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIK  162 (174)
Q Consensus        85 ~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~a~~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~  162 (174)
                              ...+.+.++|+++|+++++ ++++++++.+ +|+.|++++++++| +||+|||||+..++ ++..||++|++
T Consensus       289 --------~~~~its~~H~~~V~~~~l-p~~l~v~a~~~~Dg~iegi~~~~~p-i~gVQfHPE~~~gp~d~~~lF~~F~~  358 (360)
T PRK12564        289 --------GKVEITSQNHGFAVDEDSL-PANLEVTHVNLNDGTVEGLRHKDLP-AFSVQYHPEASPGPHDSAYLFDEFVE  358 (360)
T ss_pred             --------CcEEEEecCcccEEccccc-CCceEEEEEeCCCCcEEEEEECCCC-EEEEEeCCcCCCCCCCHHHHHHHHHH
Confidence                    1235678899999976555 5789999998 68999999999987 99999999998776 57889999997


Q ss_pred             H
Q 030626          163 M  163 (174)
Q Consensus       163 ~  163 (174)
                      .
T Consensus       359 ~  359 (360)
T PRK12564        359 L  359 (360)
T ss_pred             h
Confidence            5

>PRK13566 anthranilate synthase; Provisional

Probab=99.97  E-value=1.3e-30  Score=222.92  Aligned_cols=151  Identities=47%  Similarity=0.764  Sum_probs=123.9

Q ss_pred             HHhcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCC
Q 030626            9 YCRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDG   87 (174)
Q Consensus         9 ~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~   87 (174)
                      +...++|+|||+|||+++.+... ...+.. +..++||||||+|||+|+.++||++.+.+. ..+|.+..+...  ..++
T Consensus       565 ~~~~~~DgVVLsgGpgsp~d~~~-~~lI~~a~~~~iPILGIClG~QlLa~alGG~V~~~~~-~~~G~~~~V~v~--~~~~  640 (720)
T PRK13566        565 LDRVNPDLVVLSPGPGRPSDFDC-KATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLAY-PMHGKPSRIRVR--GPGR  640 (720)
T ss_pred             hhhcCCCEEEECCCCCChhhCCc-HHHHHHHHHCCCcEEEEehhHHHHHHHcCCEEEECCC-CccCCceEEEEC--CCCc
Confidence            44467999999999999876542 344443 567899999999999999999999999874 346766666554  3458


Q ss_pred             cccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCC---CchHHHHHHHHHHH
Q 030626           88 LLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIIT---TEGKTIVRNFIKMI  164 (174)
Q Consensus        88 l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~---~~~~~l~~~f~~~~  164 (174)
                      +|.+++..+.++++|++.+.... ++++++++|.++++.|+++++++++ +||+|||||+..+   +.|.+||+||++.+
T Consensus       641 Lf~~lp~~~~v~~~Hs~~v~~~~-Lp~~~~vlA~s~dg~V~ai~~~~~p-i~GVQFHPE~i~t~~~~~G~~ii~nfl~~~  718 (720)
T PRK13566        641 LFSGLPEEFTVGRYHSLFADPET-LPDELLVTAETEDGVIMAIEHKTLP-VAAVQFHPESIMTLGGDVGLRIIENVVRLL  718 (720)
T ss_pred             hhhcCCCCCEEEEecceeEeecc-CCCceEEEEEeCCCcEEEEEECCCC-EEEEeccCeeCCcCCchhHHHHHHHHHHHh
Confidence            99999989999999998876434 4589999999999999999999876 9999999999655   46999999999887


Q ss_pred             H
Q 030626          165 V  165 (174)
Q Consensus       165 ~  165 (174)
                      .
T Consensus       719 ~  719 (720)
T PRK13566        719 A  719 (720)
T ss_pred             h
Confidence            4

>PRK07567 glutamine amidotransferase; Provisional

Probab=99.97  E-value=3.2e-30  Score=196.40  Aligned_cols=131  Identities=25%  Similarity=0.344  Sum_probs=105.0

Q ss_pred             cCCCEEEeCCCCCCCCCc----chhHH----HH----HH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCccccccccee
Q 030626           12 KNPRGVLISPGPGAPQDS----GISLQ----TV----LE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLV   78 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~~~----~~~~~----~i----~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~   78 (174)
                      .++|||||+||++++++.    ..++.    .+    .. ...++|+||||+|||+|+.++||+|.+ ..+.+.|.....
T Consensus        50 ~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~-~~g~e~G~~~v~  128 (242)
T PRK07567         50 DDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDR-TYGEPVGAVTVS  128 (242)
T ss_pred             hhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEec-CCCCcCccEEEE
Confidence            358999999999999876    33332    12    11 368899999999999999999999998 434555544333


Q ss_pred             EeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCc
Q 030626           79 YYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESI  148 (174)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~  148 (174)
                      .......+++|.+++..+.++++|++.|..   +|++++++|+++++.+++++..+  ++||+|||||.+
T Consensus       129 l~~~g~~~~l~~~~~~~~~~~~~H~d~V~~---lp~~~~vlA~s~~~~vqa~~~~~--~~~gvQfHPE~~  193 (242)
T PRK07567        129 LTDAGRADPLLAGLPDTFTAFVGHKEAVSA---LPPGAVLLATSPTCPVQMFRVGE--NVYATQFHPELD  193 (242)
T ss_pred             ECCccCCChhhcCCCCceEEEeehhhhhhh---CCCCCEEEEeCCCCCEEEEEeCC--CEEEEEeCCcCC
Confidence            333344678999999999999999999976   78999999999999999999865  599999999984

>PRK05665 amidotransferase; Provisional

Probab=99.97  E-value=3.2e-30  Score=195.90  Aligned_cols=128  Identities=20%  Similarity=0.176  Sum_probs=107.0

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHH----HHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCC
Q 030626           13 NPRGVLISPGPGAPQDSGISLQT----VLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDG   87 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~----i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~   87 (174)
                      ++|||||+||+.++++...|+..    |++ ..+++|+||||+|||+|+.++||+|.+.+.+++.|.... ...  ...+
T Consensus        57 ~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~G~e~G~~~~-~~~--~~~~  133 (240)
T PRK05665         57 KFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQGWGVGIHRY-QLA--AHAP  133 (240)
T ss_pred             cCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCCCcccceEEE-Eec--CCCc
Confidence            59999999999999988777543    333 467899999999999999999999999886665555432 222  3456


Q ss_pred             cccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCc
Q 030626           88 LLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESI  148 (174)
Q Consensus        88 l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~  148 (174)
                      ++..++..+.++++|++.|..   +|++++++|+|+.+.+++++..+  ++||+|||||++
T Consensus       134 ~~~~~~~~~~~~~~H~D~V~~---LP~ga~~La~s~~~~~q~~~~~~--~~~g~QfHPE~~  189 (240)
T PRK05665        134 WMSPAVTELTLLISHQDQVTA---LPEGATVIASSDFCPFAAYHIGD--QVLCFQGHPEFV  189 (240)
T ss_pred             cccCCCCceEEEEEcCCeeee---CCCCcEEEEeCCCCcEEEEEeCC--CEEEEecCCcCc
Confidence            888888899999999999987   78999999999999999998765  599999999985

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=99.97  E-value=3.5e-30  Score=190.94  Aligned_cols=149  Identities=26%  Similarity=0.419  Sum_probs=112.1

Q ss_pred             CCCEEEeCCCCCCCCC--cc---------------h-hHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcc---
Q 030626           13 NPRGVLISPGPGAPQD--SG---------------I-SLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV---   70 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~--~~---------------~-~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~---   70 (174)
                      ..||||++|| .++..  ++               . -+..|++ +.+++||||||+|+|+|+.+|||++.+.-...   
T Consensus        60 ~iDgliltGg-~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~q~i~~~~~~  138 (243)
T COG2071          60 LIDGLILTGG-SNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVALGGTLYQDISEQPGH  138 (243)
T ss_pred             hccEEEecCC-CcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCeeehhhhccccc
Confidence            4799999999 44421  10               0 1355554 78999999999999999999999998865311   


Q ss_pred             -cccc-------cceeEeccCCCCCcccCCCCc-eeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEE
Q 030626           71 -MHGK-------SSLVYYDEKGEDGLLAGLSNP-FTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGV  141 (174)
Q Consensus        71 -~~~~-------~~~~~~~~~~~~~l~~~~~~~-~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~  141 (174)
                       .|..       ...+.+.  ..+.|.+-+.+. +.++++|++++++   +.++++++|.++|+.|+|++.++..+++|+
T Consensus       139 ~~H~~~~~~~~~~H~V~i~--~~s~La~i~g~~~~~VNS~HhQaIk~---La~~L~V~A~a~DG~VEAie~~~~~fvlGV  213 (243)
T COG2071         139 IDHRQPNPVHIESHEVHIE--PGSKLAKILGESEFMVNSFHHQAIKK---LAPGLVVEARAPDGTVEAVEVKNDAFVLGV  213 (243)
T ss_pred             ccccCCCCcccceeEEEec--CCccHHHhcCccceeecchHHHHHHH---hCCCcEEEEECCCCcEEEEEecCCceEEEE
Confidence             1111       1112221  233444444544 8999999999998   889999999999999999999976789999


Q ss_pred             ecCCCCcCCCc--hHHHHHHHHHHHHHH
Q 030626          142 QFHPESIITTE--GKTIVRNFIKMIVRK  167 (174)
Q Consensus       142 QfHPE~~~~~~--~~~l~~~f~~~~~~~  167 (174)
                      |||||+....+  .+.||+.|.+.+..+
T Consensus       214 QWHPE~~~~~~~~~~~LFe~F~~~~~~~  241 (243)
T COG2071         214 QWHPEYLVDTNPLSLALFEAFVNACKKH  241 (243)
T ss_pred             ecChhhhccCChHHHHHHHHHHHHHHhh
Confidence            99999976654  578999999988765

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=99.97  E-value=6.3e-30  Score=204.36  Aligned_cols=150  Identities=25%  Similarity=0.464  Sum_probs=115.9

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG   84 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~   84 (174)
                      .+++..+++|||||+|||+++.+...+++.+.+ +..++|+||||+|||+|+.++||++.+.+.+. .+...++.     
T Consensus       226 ~~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a~Gg~v~k~~~Gh-~g~n~pv~-----  299 (382)
T CHL00197        226 YQDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEAKTFKLKFGH-RGLNHPSG-----  299 (382)
T ss_pred             HHHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHHhCCEEeccCCCC-CCCCEecC-----
Confidence            456777789999999999999877666666655 34689999999999999999999999987442 23222221     


Q ss_pred             CCCcccCCCCc-eeecccccceecccCCCCCCcEEEEEc-CCCceEEEeeCCCCceEEEecCCCCcCCCc-hHHHHHHHH
Q 030626           85 EDGLLAGLSNP-FTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITTE-GKTIVRNFI  161 (174)
Q Consensus        85 ~~~l~~~~~~~-~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~-~~~l~~~f~  161 (174)
                             +... ....++|++.+.++++...++.+++.+ +|+.+++++++++| +||+|||||+..++. ...||++|+
T Consensus       300 -------~~~~v~itsq~H~~~v~~~sv~~~~~~vt~~~~nDgtvegi~h~~~p-i~gVQFHPE~~~gp~d~~~lf~~Fv  371 (382)
T CHL00197        300 -------LNQQVEITSQNHGFAVNLESLAKNKFYITHFNLNDGTVAGISHSPKP-YFSVQYHPEASPGPHDADYLFEYFI  371 (382)
T ss_pred             -------CCCceEEeecchheEeeccccCCCCcEEEEEECCCCCEEEEEECCCC-cEEEeeCCCCCCCCCCHHHHHHHHH
Confidence                   1122 334578999998766654578898875 68999999999987 999999999987765 457999999


Q ss_pred             HHHHHHHH
Q 030626          162 KMIVRKEA  169 (174)
Q Consensus       162 ~~~~~~~~  169 (174)
                      +.+.+.+.
T Consensus       372 ~~~~~~~~  379 (382)
T CHL00197        372 EIIKHSKS  379 (382)
T ss_pred             HHHHhhhc
Confidence            98876543

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=99.97  E-value=1.4e-29  Score=219.01  Aligned_cols=149  Identities=38%  Similarity=0.657  Sum_probs=124.5

Q ss_pred             cCCCEEEeCCCCCCCCCc---chhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCCc
Q 030626           12 KNPRGVLISPGPGAPQDS---GISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGL   88 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~~~---~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l   88 (174)
                      .++|+|||+||||++...   +...+.+.+. .++||||||+|||+|+.++||+|.+.+. ..||....+.+.   .+.+
T Consensus       130 ~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~-~~iPILGICLGhQ~i~~~~Gg~V~~~~~-~~HG~~s~I~h~---~~~l  204 (918)
T PLN02889        130 KAFDNIVISPGPGSPTCPADIGICLRLLLEC-RDIPILGVCLGHQALGYVHGARIVHAPE-PVHGRLSEIEHN---GCRL  204 (918)
T ss_pred             cCCCEEEECCCCCCccchHHHHHHHHHHHHh-CCCcEEEEcHHHHHHHHhcCceEEeCCC-ceeeeeeeEeec---Cchh
Confidence            478999999999998644   3335555554 4699999999999999999999999884 568887766553   4679


Q ss_pred             ccCCCC----ceeecccccceecccCCCCCCcEEEEEcCC----------------------------------------
Q 030626           89 LAGLSN----PFTAGRYHSLVIEKESFPSDALEVTAWTED----------------------------------------  124 (174)
Q Consensus        89 ~~~~~~----~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~----------------------------------------  124 (174)
                      |.+++.    .+.+..+|+..|+..+ +|+.++++|++.+                                        
T Consensus       205 F~glp~~~~~~f~v~RYHSL~v~~~~-lP~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  283 (918)
T PLN02889        205 FDDIPSGRNSGFKVVRYHSLVIDAES-LPKELVPIAWTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGT  283 (918)
T ss_pred             hcCCCcCCCCCceEEeCCCcccccCC-CCCceEEEEEECCCccccccccccccccccccccccccccccccccccccccc
Confidence            999986    5999999999997544 4588999998754                                        


Q ss_pred             -------------CceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHHHH
Q 030626          125 -------------GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK  167 (174)
Q Consensus       125 -------------~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~  167 (174)
                                   +.|+|++++..| +||+|||||...++.|..||+||++.+...
T Consensus       284 ~~~~~~~~~~~~~~viMairH~~~P-~~GVQfHPESi~t~~G~~l~~nF~~~~~~~  338 (918)
T PLN02889        284 SWPSSHSERMQNGKILMGIMHSTRP-HYGLQFHPESIATCYGRQIFKNFREITQDY  338 (918)
T ss_pred             ccccccccccCCCCeeEEEEECCCc-eEEEEeCCccccCchhHHHHHHHHHHHHHH
Confidence                         579999999988 999999999999999999999999988754

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=99.96  E-value=2.6e-29  Score=201.48  Aligned_cols=135  Identities=30%  Similarity=0.526  Sum_probs=108.9

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      .+++.++++|||||+||||++.+.....+.++++..++|+||||+|||+|+.++||++.+.+.+. +|...++.....  
T Consensus       274 ~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~~~iPIlGICLGhQlLa~AlGGkv~K~~~Gh-~G~n~pV~~~~~--  350 (415)
T PLN02771        274 ASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELLGKVPVFGICMGHQLLGQALGGKTFKMKFGH-HGGNHPVRNNRT--  350 (415)
T ss_pred             HHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHHhCCCEEEEcHHHHHHHHhcCCeEEECCCCc-ccceEEEEECCC--
Confidence            35677789999999999999987776666777654689999999999999999999999988653 666666543311  


Q ss_pred             CCcccCCCCceeecccccceecccCCCCCCcEEEEEc-CCCceEEEeeCCCCceEEEecCCCCcCCCc
Q 030626           86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITTE  152 (174)
Q Consensus        86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~  152 (174)
                             .....+.++|++.|+++++ +.++++++.+ +|+.+++++++++| ++|+|||||...++.
T Consensus       351 -------~~v~itsqnHg~aVd~~sL-p~~~~vt~~nlnDgtvegi~~~~~p-i~gVQFHPEa~pgp~  409 (415)
T PLN02771        351 -------GRVEISAQNHNYAVDPASL-PEGVEVTHVNLNDGSCAGLAFPALN-VMSLQYHPEASPGPH  409 (415)
T ss_pred             -------CCEEEEecCHHHhhccccC-CCceEEEEEeCCCCcEEEEEECCCC-EEEEEcCCCCCCCCC
Confidence                   1123577899999976665 5789999987 78999999999987 999999999987764

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.96  E-value=2e-29  Score=185.67  Aligned_cols=138  Identities=28%  Similarity=0.443  Sum_probs=109.6

Q ss_pred             cCCCEEEeCCCCCCC-CCcchh----HHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626           12 KNPRGVLISPGPGAP-QDSGIS----LQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus        12 ~~~dgiii~GG~~~~-~~~~~~----~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      .++|||||+||+.+. .+...+    .+.++. ..+++|+||||+|+|+|+.++||++.+.+.+...|............
T Consensus        45 ~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~~~~~g~~~v~~~~~~~~  124 (188)
T cd01741          45 DDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPKGWEIGWFPVTLTEAGKA  124 (188)
T ss_pred             ccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCCcceeEEEEEEecccccc
Confidence            368999999999988 444333    233443 56789999999999999999999999987553344433322333345


Q ss_pred             CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHH
Q 030626           86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI  161 (174)
Q Consensus        86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~  161 (174)
                      +++++++++.+.++++|++.+..   ++++++++|+++++.+++++.+.  ++||+|||||       ..+++||+
T Consensus       125 ~~l~~~~~~~~~v~~~H~~~v~~---lp~~~~~la~~~~~~v~~~~~~~--~~~g~QfHPE-------~~~~~~f~  188 (188)
T cd01741         125 DPLFAGLPDEFPVFHWHGDTVVE---LPPGAVLLASSEACPNQAFRYGD--RALGLQFHPE-------ERLLRNFL  188 (188)
T ss_pred             CchhhcCCCcceEEEEeccChhh---CCCCCEEeecCCCCCcceEEecC--CEEEEccCch-------HHHHhhhC
Confidence            67888888899999999999986   67899999999999999999873  5999999999       77888884

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PRK08250 glutamine amidotransferase; Provisional

Probab=99.96  E-value=6.3e-29  Score=188.60  Aligned_cols=138  Identities=24%  Similarity=0.301  Sum_probs=109.5

Q ss_pred             CCCEEEeCCCCCCCCC---cchh------HHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEecc
Q 030626           13 NPRGVLISPGPGAPQD---SGIS------LQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE   82 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~---~~~~------~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~   82 (174)
                      ++|+|||+||+.++.+   ...+      .+.+++ ...++|+||||+|+|+|+.++||+|.+.+. .+.|......+..
T Consensus        45 ~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~-~e~G~~~v~lt~~  123 (235)
T PRK08250         45 GFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSPE-KEIGYFPITLTEA  123 (235)
T ss_pred             ccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCCC-CceeEEEEEEccc
Confidence            6899999999998653   2222      234544 567899999999999999999999998874 5667665444555


Q ss_pred             CCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHH
Q 030626           83 KGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK  162 (174)
Q Consensus        83 ~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~  162 (174)
                      ...+++|.++++.+.+++||++.+.    +|++++++|+|+.+.+++++..+  ++||+|||||.+     ..+++.+++
T Consensus       124 g~~d~l~~~~~~~~~v~~~H~d~~~----lP~~a~~LA~s~~~~~qa~~~~~--~~~g~QfHPE~~-----~~~~~~~~~  192 (235)
T PRK08250        124 GLKDPLLSHFGSTLTVGHWHNDMPG----LTDQAKVLATSEGCPRQIVQYSN--LVYGFQCHMEFT-----VEAVELLIA  192 (235)
T ss_pred             cccCchhhcCCCCcEEEEEecceec----CCCCCEEEECCCCCCceEEEeCC--CEEEEeecCcCC-----HHHHHHHHH
Confidence            5677899999999999999999764    67999999999999999999875  599999999974     334444444

>PRK06490 glutamine amidotransferase; Provisional

Probab=99.96  E-value=1.6e-28  Score=186.70  Aligned_cols=136  Identities=21%  Similarity=0.292  Sum_probs=102.9

Q ss_pred             CCCEEEeCCCCCCCCCcchhHH----HHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCC
Q 030626           13 NPRGVLISPGPGAPQDSGISLQ----TVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDG   87 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~----~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~   87 (174)
                      ++||+||+||++++++...++.    .|++ ...++|+||||+|||+|+.++||+|.+.+.+.....+..+....  ..+
T Consensus        52 ~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~G~~e~G~~~i~~~~--~~~  129 (239)
T PRK06490         52 DHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARHLGARVAPHPDGRVEIGYYPLRPTE--AGR  129 (239)
T ss_pred             ccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCCCCCccceEEeEECC--Ccc
Confidence            6899999999999998876643    3343 56789999999999999999999999987554222333444332  223


Q ss_pred             cccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHH
Q 030626           88 LLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM  163 (174)
Q Consensus        88 l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~  163 (174)
                      ++..++  ..++++|++.+.    +|++++++|+++++.+++++..+  ++||+|||||++     ..++++|+..
T Consensus       130 ~~~~~~--~~~~~~H~d~~~----lP~~~~~LA~s~~~~~qa~~~~~--~v~g~QfHPE~~-----~~~~~~~i~~  192 (239)
T PRK06490        130 ALMHWP--EMVYHWHREGFD----LPAGAELLATGDDFPNQAFRYGD--NAWGLQFHPEVT-----RAMMHRWVVR  192 (239)
T ss_pred             cccCCC--CEEEEECCcccc----CCCCCEEEEeCCCCCeEEEEeCC--CEEEEeeCccCC-----HHHHHHHHHh
Confidence            444443  357889999843    67899999999999999999875  599999999985     4566666553

>PRK07053 glutamine amidotransferase; Provisional

Probab=99.96  E-value=3e-28  Score=184.64  Aligned_cols=138  Identities=20%  Similarity=0.283  Sum_probs=106.6

Q ss_pred             cCCCEEEeCCCCCCCCCcc--hh----HHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCC
Q 030626           12 KNPRGVLISPGPGAPQDSG--IS----LQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG   84 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~~~~--~~----~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~   84 (174)
                      .++|+|||+||+.++++..  .+    .+.+++ ...++|+||||+|+|+|+.++||+|.+.. ..+.|...........
T Consensus        46 ~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~-~~e~G~~~i~~t~~g~  124 (234)
T PRK07053         46 LEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARALGARVYPGG-QKEIGWAPLTLTDAGR  124 (234)
T ss_pred             cCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHHcCCcEecCC-CCeEeEEEEEEecccc
Confidence            3689999999999988753  23    244443 56789999999999999999999999864 4556655444444444


Q ss_pred             CCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHH
Q 030626           85 EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK  162 (174)
Q Consensus        85 ~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~  162 (174)
                      .+++ .+++..+.++++|++.++    +|++++++|+|+.+.+++++..+  ++||+|||||.+     ..+++.|+.
T Consensus       125 ~~pl-~~~~~~~~~~~~H~d~~~----lP~ga~~La~s~~~~~qaf~~g~--~~~g~QfHpE~~-----~~~~~~w~~  190 (234)
T PRK07053        125 ASPL-RHLGAGTPVLHWHGDTFD----LPEGATLLASTPACRHQAFAWGN--HVLALQFHPEAR-----EDRFEAWLI  190 (234)
T ss_pred             CChh-hcCCCcceEEEEeCCEEe----cCCCCEEEEcCCCCCeeEEEeCC--CEEEEeeCccCC-----HHHHHHHHH
Confidence            5565 467778889999999985    67999999999999999999854  599999999985     335555543

>PRK06186 hypothetical protein; Validated

Probab=99.95  E-value=3.3e-28  Score=181.82  Aligned_cols=154  Identities=19%  Similarity=0.251  Sum_probs=107.8

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCC--ccccccc--ceeE---------
Q 030626           13 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPL--GVMHGKS--SLVY---------   79 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~--~~~~~~~--~~~~---------   79 (174)
                      ++|||+++||.|.....++....-+++.+++|+||||+|||++...++.++.....  ..+....  .++.         
T Consensus        53 ~~dgilvpgGfg~rg~~Gki~ai~~Are~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~~~~~  132 (229)
T PRK06186         53 GFDGIWCVPGSPYRNDDGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSCSLVE  132 (229)
T ss_pred             hCCeeEeCCCCCcccHhHHHHHHHHHHHcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECcccccc
Confidence            68999999999998888887666667889999999999999988887776644331  1111110  1111         


Q ss_pred             ---eccCCCCCcccCCC--Cceeecccccceeccc---CCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCC
Q 030626           80 ---YDEKGEDGLLAGLS--NPFTAGRYHSLVIEKE---SFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITT  151 (174)
Q Consensus        80 ---~~~~~~~~l~~~~~--~~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~  151 (174)
                         .....+++++..+.  +.+...+.|.|.|++.   .+...|++++|+++|+.|++++.+++|+++|+|||||+.+.+
T Consensus       133 ~~h~v~l~~~S~l~~iyg~~~i~erhrHryeVNs~h~q~i~~~GL~vsa~s~DG~iEaiE~~~hpf~lGVQwHPE~~s~~  212 (229)
T PRK06186        133 KTGDIRLRPGSLIARAYGTLEIEEGYHCRYGVNPEFVAALESGDLRVTGWDEDGDVRAVELPGHPFFVATLFQPERAALA  212 (229)
T ss_pred             CceEEEECCCCHHHHHhCCCeeeeeccccEEECHHHHHHHhcCCeEEEEEcCCCCEEEEEeCCCCcEEEEeCCCCccCCC
Confidence               00011233333322  2244455566666531   234689999999999999999999999999999999997654


Q ss_pred             -chHHHHHHHHHHHHH
Q 030626          152 -EGKTIVRNFIKMIVR  166 (174)
Q Consensus       152 -~~~~l~~~f~~~~~~  166 (174)
                       ...+||+.|++++.+
T Consensus       213 ~~~~~LF~~Fv~aa~~  228 (229)
T PRK06186        213 GRPPPLVRAFLRAARA  228 (229)
T ss_pred             CCCCHHHHHHHHHHhc
Confidence             456999999998753

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.95  E-value=4.6e-28  Score=178.50  Aligned_cols=118  Identities=25%  Similarity=0.454  Sum_probs=95.7

Q ss_pred             cCCCEEEeCCCCCCCCC--------------cc--hh-HHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCccccc
Q 030626           12 KNPRGVLISPGPGAPQD--------------SG--IS-LQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHG   73 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~~--------------~~--~~-~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~   73 (174)
                      .++|||||+||++...+              ..  .. .+.++. ...++|+||||+|+|+|+.++||++.+..      
T Consensus        52 ~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~~------  125 (189)
T cd01745          52 ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGMQLLNVALGGTLYQDI------  125 (189)
T ss_pred             hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcCC------
Confidence            36899999999875321              00  01 233443 46789999999999999999999997643      


Q ss_pred             ccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCC--C
Q 030626           74 KSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIIT--T  151 (174)
Q Consensus        74 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~--~  151 (174)
                                             .++++|++.|..   ++++++++|+++++.+++++.+++++++|+|||||+..+  +
T Consensus       126 -----------------------~v~~~H~~~v~~---~~~~~~vla~~~d~~vea~~~~~~~~~~gvQfHPE~~~~~~~  179 (189)
T cd01745         126 -----------------------RVNSLHHQAIKR---LADGLRVEARAPDGVIEAIESPDRPFVLGVQWHPEWLADTDP  179 (189)
T ss_pred             -----------------------ceechHHHHHhh---cCCCCEEEEECCCCcEEEEEeCCCCeEEEEecCCCcCcccCc
Confidence                                   467889999976   678999999999999999999874469999999999887  7


Q ss_pred             chHHHHHHHH
Q 030626          152 EGKTIVRNFI  161 (174)
Q Consensus       152 ~~~~l~~~f~  161 (174)
                      ++.+||++|+
T Consensus       180 ~~~~if~~f~  189 (189)
T cd01745         180 DSLKLFEAFV  189 (189)
T ss_pred             hHhHHHHHhC
Confidence            8999999984

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=99.95  E-value=3.8e-27  Score=202.73  Aligned_cols=149  Identities=31%  Similarity=0.513  Sum_probs=115.3

Q ss_pred             cCCCEEEeCCCCCCCCCcch--hHHHHHHc--CCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCC
Q 030626           12 KNPRGVLISPGPGAPQDSGI--SLQTVLEL--GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDG   87 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~~~~~--~~~~i~~~--~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~   87 (174)
                      .++|+|||+||||++.+...  +.+.+.+.  ..++||||||+|||+|+.++||++.+.+. ..||....+...   ...
T Consensus        52 ~~~D~VVIspGPG~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~-~~hG~~~~v~~~---~~~  127 (742)
T TIGR01823        52 PLFDAIVVGPGPGNPNNAQDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPT-PKHGQVYEMHTN---DAA  127 (742)
T ss_pred             cCCCEEEECCCCCCccchhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEECCC-CCcCeEEEEEEC---Ccc
Confidence            36899999999999975443  33444442  24799999999999999999999999873 457765545442   456


Q ss_pred             cccCCCCceeecccccceecccCCCCCC--cEEEEEcCC-CceEEEeeCCCCceEEEecCCCCcCCCch-HHHHHHHHHH
Q 030626           88 LLAGLSNPFTAGRYHSLVIEKESFPSDA--LEVTAWTED-GLIMAARHKKYKHLQGVQFHPESIITTEG-KTIVRNFIKM  163 (174)
Q Consensus        88 l~~~~~~~~~~~~~H~~~v~~~~l~~~~--~~~~a~s~~-~~i~a~~~~~~~~~~g~QfHPE~~~~~~~-~~l~~~f~~~  163 (174)
                      +|.+++. +.++.+|++.+..+  .++.  +.+++.+.+ +.++|+++.++| +||+|||||+..++.+ .+||+||++.
T Consensus       128 lf~gl~~-~~v~~~Hs~~v~~~--~~~~l~~~~~a~~~~~~~i~ai~h~~~p-i~GVQFHPE~~~s~~g~~~Lf~nFl~~  203 (742)
T TIGR01823       128 IFCGLFS-VKSTRYHSLYANPE--GIDTLLPLCLTEDEEGIILMSAQTKKKP-WFGVQYHPESCCSELGSGKLVSNFLKL  203 (742)
T ss_pred             ccCCCCC-CceeEEEEEEccCC--CCCcceEEEEEEcCCCCeEEEEEEcCCc-eEEEEeCcccCCCCccHHHHHHHHHHH
Confidence            8988875 88999999998652  2233  456666654 469999999987 9999999999877765 9999999999


Q ss_pred             HHHHH
Q 030626          164 IVRKE  168 (174)
Q Consensus       164 ~~~~~  168 (174)
                      +.+..
T Consensus       204 ~~~~~  208 (742)
T TIGR01823       204 AFINN  208 (742)
T ss_pred             HHHhh
Confidence            88654

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=99.95  E-value=3.3e-27  Score=170.91  Aligned_cols=142  Identities=27%  Similarity=0.405  Sum_probs=106.5

Q ss_pred             CCCEEEeCCCCCCCCCcch------hHHHHHH-cCCCCcEEeehHhHHHHHHH------------hCCeeccCCCc---c
Q 030626           13 NPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMGLQCIGEA------------FGGKIVRSPLG---V   70 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~------~~~~i~~-~~~~~PilGIC~G~Qll~~~------------~gg~v~~~~~~---~   70 (174)
                      ..|+||+| |.|+..+..+      +++.+++ ...++|+||||+|||+|.+.            +.|+|.+.+..   .
T Consensus        39 ~AD~liLP-GVGaf~~am~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kv  117 (204)
T COG0118          39 KADKLILP-GVGAFGAAMANLRERGLIEAIKEAVESGKPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKV  117 (204)
T ss_pred             hCCEEEec-CCCCHHHHHHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhhhcccccCCCCCcceecceEEEcCCCCCCC
Confidence            57899865 5666654433      3455554 55679999999999999863            44788777643   4


Q ss_pred             cccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCC-ceEEEeeCCCCceEEEecCCCCcC
Q 030626           71 MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESII  149 (174)
Q Consensus        71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~-~i~a~~~~~~~~~~g~QfHPE~~~  149 (174)
                      +|..|+.+...  ..++||+++++.-.+|+.|+|.+.+    .+.-.++++++.+ .+-|+..++  +++|+|||||+ |
T Consensus       118 PHMGWN~l~~~--~~~~l~~gi~~~~~~YFVHSY~~~~----~~~~~v~~~~~YG~~f~AaV~k~--N~~g~QFHPEK-S  188 (204)
T COG0118         118 PHMGWNQVEFV--RGHPLFKGIPDGAYFYFVHSYYVPP----GNPETVVATTDYGEPFPAAVAKD--NVFGTQFHPEK-S  188 (204)
T ss_pred             Cccccceeecc--CCChhhcCCCCCCEEEEEEEEeecC----CCCceEEEeccCCCeeEEEEEeC--CEEEEecCccc-c
Confidence            68888887766  6889999998877899999999974    2344566766665 444444444  69999999999 7


Q ss_pred             CCchHHHHHHHHHHH
Q 030626          150 TTEGKTIVRNFIKMI  164 (174)
Q Consensus       150 ~~~~~~l~~~f~~~~  164 (174)
                      +..|.+|++||++.+
T Consensus       189 g~~Gl~lL~NFl~~~  203 (204)
T COG0118         189 GKAGLKLLKNFLEWI  203 (204)
T ss_pred             hHHHHHHHHHHHhhc
Confidence            889999999999864

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=99.95  E-value=2.6e-27  Score=179.33  Aligned_cols=148  Identities=18%  Similarity=0.279  Sum_probs=104.7

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcc---c-ccccceeEec------
Q 030626           13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV---M-HGKSSLVYYD------   81 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~---~-~~~~~~~~~~------   81 (174)
                      ++||||++||++.+...+. +..++. ...++|+||||+|||+|+.++|+++.+.+...   . .+...++...      
T Consensus        55 ~~dgivl~GG~~~~~~~~~-~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (235)
T cd01746          55 GADGILVPGGFGIRGVEGK-ILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKG  133 (235)
T ss_pred             cCCEEEECCCCCCcchhhH-HHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECccccc
Confidence            5899999999988765543 233433 56789999999999999999999998765321   0 1111111100      


Q ss_pred             ---------------cCCCCCcccC-CC-Cceeecccccceeccc---CCCCCCcEEEEEcC-CCceEEEeeCCCCceEE
Q 030626           82 ---------------EKGEDGLLAG-LS-NPFTAGRYHSLVIEKE---SFPSDALEVTAWTE-DGLIMAARHKKYKHLQG  140 (174)
Q Consensus        82 ---------------~~~~~~l~~~-~~-~~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~-~~~i~a~~~~~~~~~~g  140 (174)
                                     ...+++++.. ++ +...+.++|+++|+++   .++..+++++|++. |+.|++++.+++|+++|
T Consensus       134 ~~~~~~~~rl~~h~v~i~~~s~l~~~~g~~~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lg  213 (235)
T cd01746         134 VKDLGGTMRLGAYPVILKPGTLAHKYYGKDEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVG  213 (235)
T ss_pred             ccccCcccccCceEEEECCCChHHHHhCCCEEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEE
Confidence                           0012233333 23 2467899999998653   22468999999998 89999999999997779


Q ss_pred             EecCCCCcCCC-chHHHHHHHH
Q 030626          141 VQFHPESIITT-EGKTIVRNFI  161 (174)
Q Consensus       141 ~QfHPE~~~~~-~~~~l~~~f~  161 (174)
                      +|||||+.+.+ +..+||++|+
T Consensus       214 vQ~HPE~~~~~~~~~~lF~~fv  235 (235)
T cd01746         214 TQFHPEFKSRPLKPHPLFVGFV  235 (235)
T ss_pred             EECCCCCcCCCCCccHHHHHhC
Confidence            99999997654 4578999885

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.94  E-value=1.3e-26  Score=170.77  Aligned_cols=135  Identities=24%  Similarity=0.397  Sum_probs=99.9

Q ss_pred             CCCEEEeCCCCCCCCCcc----hhHHHHHH-cCCCCcEEeehHhHHHHHHHhCC-----------eeccCCCcccccccc
Q 030626           13 NPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGG-----------KIVRSPLGVMHGKSS   76 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~----~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg-----------~v~~~~~~~~~~~~~   76 (174)
                      ++|||||+||+.+..+..    .+.+.+++ ...++|+||||+|+|+|+.++|+           ++.+.+.+...+.. 
T Consensus        38 ~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~~g~~~g~~-  116 (189)
T PRK13525         38 EIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKEIEGYEQEHLGLLDITVRRNAFGRQVDSF-  116 (189)
T ss_pred             cCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhhcccCCCCceeeEEEEEEEccCCCceeeE-
Confidence            589999999987664321    12344554 56789999999999999999998           44444332222211 


Q ss_pred             eeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHH
Q 030626           77 LVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTI  156 (174)
Q Consensus        77 ~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l  156 (174)
                             ..+.++.++++.+.++++|++.|..   +|++++++|++++ .+++++..   ++||+|||||+..   ..+|
T Consensus       117 -------~~~~~~~~~~~~~~~~~~H~d~v~~---lp~~~~vlA~~~~-~~~~~~~~---~~~g~QfHPE~~~---~~~~  179 (189)
T PRK13525        117 -------EAELDIKGLGEPFPAVFIRAPYIEE---VGPGVEVLATVGG-RIVAVRQG---NILATSFHPELTD---DTRV  179 (189)
T ss_pred             -------EecccccCCCCCeEEEEEeCceeec---cCCCcEEEEEcCC-EEEEEEeC---CEEEEEeCCccCC---CchH
Confidence                   1235677777789999999999987   7799999999875 44566543   5999999999853   3799


Q ss_pred             HHHHHHHHH
Q 030626          157 VRNFIKMIV  165 (174)
Q Consensus       157 ~~~f~~~~~  165 (174)
                      |+||++.|+
T Consensus       180 ~~~f~~~~~  188 (189)
T PRK13525        180 HRYFLEMVK  188 (189)
T ss_pred             HHHHHHHhh
Confidence            999999875

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.94  E-value=1.1e-26  Score=173.68  Aligned_cols=142  Identities=27%  Similarity=0.361  Sum_probs=104.1

Q ss_pred             CCCEEEeCCCCCCCCCcch-----hHHHH-HH-cCCCCcEEeehHhHHHHHHH------------hCCeeccC-CC----
Q 030626           13 NPRGVLISPGPGAPQDSGI-----SLQTV-LE-LGPTVPLFGVCMGLQCIGEA------------FGGKIVRS-PL----   68 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~-----~~~~i-~~-~~~~~PilGIC~G~Qll~~~------------~gg~v~~~-~~----   68 (174)
                      ++|+|||+|+..+..+...     +...+ +. ...++|+||||+|+|+|+.+            ++|++.+. +.    
T Consensus        41 ~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~  120 (209)
T PRK13146         41 AADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPAL  120 (209)
T ss_pred             CCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCC
Confidence            6899999886443222111     12233 33 35789999999999999999            88999886 21    


Q ss_pred             cccccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCC-ceEEEeeCCCCceEEEecCCCC
Q 030626           69 GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPES  147 (174)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~-~i~a~~~~~~~~~~g~QfHPE~  147 (174)
                      ...+..|..+...  .++++|+++++.+.++++|++.+..   ++ +..++|+++++ .++++....  ++||+|||||+
T Consensus       121 ~~p~~G~~~v~~~--~~~~lf~~~~~~~~v~~~Hs~~v~~---~~-~~~~la~s~~~~~~~a~~~~~--~i~GvQFHPE~  192 (209)
T PRK13146        121 KVPHMGWNTVDQT--RDHPLFAGIPDGARFYFVHSYYAQP---AN-PADVVAWTDYGGPFTAAVARD--NLFATQFHPEK  192 (209)
T ss_pred             ccCccChHHeeeC--CCChhccCCCCCCEEEEEeEEEEEc---CC-CCcEEEEEcCCCEEEEEEecC--CEEEEEcCCcc
Confidence            1223445555443  4678999999999999999999975   33 56888988765 467776543  59999999998


Q ss_pred             cCCCchHHHHHHHHHH
Q 030626          148 IITTEGKTIVRNFIKM  163 (174)
Q Consensus       148 ~~~~~~~~l~~~f~~~  163 (174)
                      . ++.|..|++||++.
T Consensus       193 s-~~~G~~ll~nfl~~  207 (209)
T PRK13146        193 S-QDAGLALLRNFLAW  207 (209)
T ss_pred             c-HHHHHHHHHHHHhh
Confidence            5 67899999999875

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.94  E-value=1e-26  Score=174.65  Aligned_cols=136  Identities=29%  Similarity=0.429  Sum_probs=91.3

Q ss_pred             hHHHHHHhcCCCEEEeCCCCCCCCC----c------ch-------h-HHHHH-HcCCCCcEEeehHhHHHHHHHhCCeec
Q 030626            4 NYLVSYCRKNPRGVLISPGPGAPQD----S------GI-------S-LQTVL-ELGPTVPLFGVCMGLQCIGEAFGGKIV   64 (174)
Q Consensus         4 ~~~~~~~~~~~dgiii~GG~~~~~~----~------~~-------~-~~~i~-~~~~~~PilGIC~G~Qll~~~~gg~v~   64 (174)
                      ...+++.+ .+||||++||..+...    .      ..       + +.+++ +.++++||||||+|||+|+.++||++.
T Consensus        50 ~~~~~~l~-~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~  128 (217)
T PF07722_consen   50 EELDELLD-RIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLY  128 (217)
T ss_dssp             HHHHHHHH-CSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEE
T ss_pred             HHHHHHHh-hcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCce
Confidence            44555554 6899999999854410    0      00       1 12233 368999999999999999999999998


Q ss_pred             cCCCccc----c------cccceeEeccCCCCCcccCCC--CceeecccccceecccCCCCCCcEEEEEcCCCceEEEee
Q 030626           65 RSPLGVM----H------GKSSLVYYDEKGEDGLLAGLS--NPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARH  132 (174)
Q Consensus        65 ~~~~~~~----~------~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~  132 (174)
                      +......    +      .....+..   .+++++..+.  ....++++|+++|++   ++++++++|++.|+.|+|++.
T Consensus       129 q~~~~~~~~~~~~~~~~~~~~h~v~i---~~~s~l~~~~~~~~~~vns~Hhq~v~~---l~~~l~v~A~s~Dg~iEaie~  202 (217)
T PF07722_consen  129 QDIPDQPGFPDHRQHPQDFPSHPVRI---VPGSLLAKILGSEEIEVNSFHHQAVKP---LGEGLRVTARSPDGVIEAIES  202 (217)
T ss_dssp             SCCCCSS-EEECEE-S-TS--EEEEE---ETTSTCCCTSHHCTEEEEEEECEEECC---HHCCEEEEEEECTSSEEEEEE
T ss_pred             eecccCcCccccccccccccccccee---ccCchHHHHhCcCcceeecchhhhhhc---cCCCceEEEEecCCcEEEEEE
Confidence            8764310    1      11112222   2444555443  578999999999998   789999999999999999999


Q ss_pred             CCCC-ceEEEecCCC
Q 030626          133 KKYK-HLQGVQFHPE  146 (174)
Q Consensus       133 ~~~~-~~~g~QfHPE  146 (174)
                      .+++ +++|+|||||
T Consensus       203 ~~~~~~~~GvQwHPE  217 (217)
T PF07722_consen  203 PEHKYPILGVQWHPE  217 (217)
T ss_dssp             CCESS-EEEESS-CC
T ss_pred             cCCCCCEEEEEeCCC
Confidence            9865 7999999999

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]

Probab=99.94  E-value=3e-27  Score=187.25  Aligned_cols=148  Identities=28%  Similarity=0.491  Sum_probs=122.2

Q ss_pred             HHHHhcCCCEEEeCCCCCCCCCcch--hHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCC
Q 030626            7 VSYCRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG   84 (174)
Q Consensus         7 ~~~~~~~~dgiii~GG~~~~~~~~~--~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~   84 (174)
                      .+|...++.||||+|||.|+|+.+.  +...+.+++  +|+||||+|||+|+..+||.|.+.. ..+.|.... ..  ..
T Consensus        53 ~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~if~~~--vpvLGICYGmQ~i~~~~Gg~V~~~~-~RE~G~~eI-~v--~~  126 (552)
T KOG1622|consen   53 KTITEYGPRGIIISGGPNSVYAEDAPSFDPAIFELG--VPVLGICYGMQLINKLNGGTVVKGM-VREDGEDEI-EV--DD  126 (552)
T ss_pred             hhhhcCCceEEEEeCCCCccccCcCCCCChhHhccC--CcceeehhHHHHHHHHhCCcccccc-ccCCCCceE-Ec--Cc
Confidence            4566678999999999999987654  557777776  9999999999999999999998876 334555432 22  23


Q ss_pred             CCCcccCCCCce--eecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHH
Q 030626           85 EDGLLAGLSNPF--TAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK  162 (174)
Q Consensus        85 ~~~l~~~~~~~~--~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~  162 (174)
                      ..++|+++-...  .++..|++.+.+   .+.+|++.|+|.+..+.++.+...+ +||+|||||...++.|..+++||+-
T Consensus       127 ~~~lF~~~~~~~~~~VlltHgdsl~~---v~~g~kv~a~s~n~~va~i~~e~kk-iyglqfhpEV~~t~~g~~ll~nFl~  202 (552)
T KOG1622|consen  127 SVDLFSGLHKTEFMTVLLTHGDSLSK---VPEGFKVVAFSGNKPVAGILNELKK-IYGLQFHPEVTLTPNGKELLKNFLF  202 (552)
T ss_pred             hhhhhhhhcccceeeeeeccccchhh---ccccceeEEeecCcceeeehhhhhh-hhcCCCCCcccccCchhHHHHHHHH
Confidence            556888876544  489999999998   7899999999999989999988765 9999999999999999999999994


Q ss_pred             HH
Q 030626          163 MI  164 (174)
Q Consensus       163 ~~  164 (174)
                      .+
T Consensus       203 ~v  204 (552)
T KOG1622|consen  203 DV  204 (552)
T ss_pred             HH
Confidence            43

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.94  E-value=3.4e-26  Score=169.41  Aligned_cols=137  Identities=24%  Similarity=0.348  Sum_probs=95.3

Q ss_pred             CCCEEEeCCCCCCCCCcch------hHHHHHHcCCCCcEEeehHhHHHHHHHhC------------CeeccCCC---ccc
Q 030626           13 NPRGVLISPGPGAPQDSGI------SLQTVLELGPTVPLFGVCMGLQCIGEAFG------------GKIVRSPL---GVM   71 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~------~~~~i~~~~~~~PilGIC~G~Qll~~~~g------------g~v~~~~~---~~~   71 (174)
                      ++|+||| ||+|.+.+...      +.+.+++.  ++||||||+|||+|+.+++            +++.+...   ...
T Consensus        38 ~~d~iIl-PG~G~~~~~~~~l~~~~l~~~i~~~--~~PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~p  114 (196)
T PRK13170         38 AADKLFL-PGVGTAQAAMDQLRERELIDLIKAC--TQPVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTDFGLPLP  114 (196)
T ss_pred             CCCEEEE-CCCCchHHHHHHHHHcChHHHHHHc--CCCEEEECHHHHHHhhhcccCCCCCCcccccEEEEECCCCCCCCC
Confidence            5899998 66666554432      33444443  6999999999999999973            34444321   122


Q ss_pred             ccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCC
Q 030626           72 HGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITT  151 (174)
Q Consensus        72 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~  151 (174)
                      +..|..+...  .++++++++++.+.++++|++.+.      .+..++|+++++...+....+. ++||+|||||+. .+
T Consensus       115 ~~G~~~v~~~--~~~~l~~~l~~~~~v~~~Hs~~lp------~~~~~la~s~~~~~~~~~~~~~-~i~G~QFHPE~~-~~  184 (196)
T PRK13170        115 HMGWNQVTPQ--AGHPLFQGIEDGSYFYFVHSYAMP------VNEYTIAQCNYGEPFSAAIQKD-NFFGVQFHPERS-GA  184 (196)
T ss_pred             ccccceeEeC--CCChhhhCCCcCCEEEEECeeecC------CCCcEEEEecCCCeEEEEEEcC-CEEEEECCCCCc-cc
Confidence            3445545443  357799999999999999998763      3456778887654333333333 499999999995 68


Q ss_pred             chHHHHHHHHH
Q 030626          152 EGKTIVRNFIK  162 (174)
Q Consensus       152 ~~~~l~~~f~~  162 (174)
                      .|..+++||++
T Consensus       185 ~G~~~l~nfl~  195 (196)
T PRK13170        185 AGAQLLKNFLE  195 (196)
T ss_pred             ccHHHHHHHhh
Confidence            99999999985

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.94  E-value=3.7e-26  Score=170.44  Aligned_cols=143  Identities=25%  Similarity=0.316  Sum_probs=99.5

Q ss_pred             CCCEEEeCCCCCCCCCcc------hhHHHHHH-cCCCCcEEeehHhHHHHHHHhC------------------CeeccCC
Q 030626           13 NPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG------------------GKIVRSP   67 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~------~~~~~i~~-~~~~~PilGIC~G~Qll~~~~g------------------g~v~~~~   67 (174)
                      ++|+||+||+ +++.+..      .+.+.+++ ..+++|+||||+|||+|+.+++                  +++.+.+
T Consensus        37 ~~d~iIlPG~-g~~~~~~~~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~  115 (210)
T PRK14004         37 NSKALILPGD-GHFDKAMENLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFE  115 (210)
T ss_pred             cCCEEEECCC-CchHHHHHHHHHcCcHHHHHHHHHcCCCEEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcC
Confidence            7899997766 5443321      23344444 6688999999999999999764                  5555543


Q ss_pred             C---cccccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCC-Cc-eEEEeeCCCCceEEEe
Q 030626           68 L---GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED-GL-IMAARHKKYKHLQGVQ  142 (174)
Q Consensus        68 ~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~-~~-i~a~~~~~~~~~~g~Q  142 (174)
                      .   ...|..|..+......++++|.++++.+.++++|++....    ...+.+++.+++ +. +.++..+ . ++||+|
T Consensus       116 ~~~~~~ph~Gw~~v~~~~~~~~~lf~~l~~~~~v~~~HS~~~~~----~~~l~~sa~~~~~g~~~~a~~~~-~-~i~GvQ  189 (210)
T PRK14004        116 GKDFKVPHIGWNRLQIRRKDKSKLLKGIGDQSFFYFIHSYRPTG----AEGNAITGLCDYYQEKFPAVVEK-E-NIFGTQ  189 (210)
T ss_pred             CCCCcCCccCcccceeccCCCCccccCCCCCCEEEEeceeecCC----CCcceEEEeeeECCEEEEEEEec-C-CEEEEe
Confidence            1   2346667666554335678999999999999999986532    233455665544 33 4455543 3 599999


Q ss_pred             cCCCCcCCCchHHHHHHHHHH
Q 030626          143 FHPESIITTEGKTIVRNFIKM  163 (174)
Q Consensus       143 fHPE~~~~~~~~~l~~~f~~~  163 (174)
                      ||||+.. +.|..|++||++.
T Consensus       190 FHPE~s~-~~G~~iL~nfl~~  209 (210)
T PRK14004        190 FHPEKSH-THGLKLLENFIEF  209 (210)
T ss_pred             CCcccCc-hhHHHHHHHHHhh
Confidence            9999965 7999999999875

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.94  E-value=3.5e-26  Score=169.95  Aligned_cols=143  Identities=22%  Similarity=0.326  Sum_probs=102.1

Q ss_pred             CCCEEEeCCCCCCCCCc----chhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEec--cC--
Q 030626           13 NPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD--EK--   83 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~----~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~--~~--   83 (174)
                      ++|+|||+||+++..+.    ....+.+++ ...++|+||||+|+|+|+.++||...........|........  ..  
T Consensus        43 ~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~~gg~~v~~~~~~~lG~~~~~v~~~~~g~~  122 (200)
T PRK13527         43 DCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFGRQ  122 (200)
T ss_pred             cCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhhhcCCccCCCCCceeeeeEEEEeeccccCc
Confidence            68999999998876422    123455554 5678999999999999999999843222222334433221111  00  


Q ss_pred             ----CCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHH
Q 030626           84 ----GEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRN  159 (174)
Q Consensus        84 ----~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~  159 (174)
                          ..+.+|.++++.+.++++|++.+..   ++++++++|+++++.+ +++..   ++||+|||||.+.  + .+|+++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~H~~~v~~---lp~~~~~la~~~~~~~-a~~~~---~~~g~QfHPE~~~--~-~~l~~~  192 (200)
T PRK13527        123 RDSFEAEIDLSGLDGPFHAVFIRAPAITK---VGGDVEVLAKLDDRIV-AVEQG---NVLATAFHPELTD--D-TRIHEY  192 (200)
T ss_pred             cccEEEeEeccccCCcceEEEEccccccc---cCCCeEEEEEECCEEE-EEEEC---CEEEEEeCCCCCC--C-CHHHHH
Confidence                1234577778889999999999976   7799999999998865 66532   5999999999752  2 899999


Q ss_pred             HHHHHH
Q 030626          160 FIKMIV  165 (174)
Q Consensus       160 f~~~~~  165 (174)
                      |++.+.
T Consensus       193 f~~~~~  198 (200)
T PRK13527        193 FLKKVK  198 (200)
T ss_pred             HHHHHh
Confidence            999874

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=99.94  E-value=2.2e-26  Score=170.82  Aligned_cols=138  Identities=27%  Similarity=0.379  Sum_probs=99.9

Q ss_pred             CCCEEEeCCCCCCCCCc------chhHHHHHH-cCCCCcEEeehHhHHHHHHH------------hCCeeccCCCc----
Q 030626           13 NPRGVLISPGPGAPQDS------GISLQTVLE-LGPTVPLFGVCMGLQCIGEA------------FGGKIVRSPLG----   69 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~------~~~~~~i~~-~~~~~PilGIC~G~Qll~~~------------~gg~v~~~~~~----   69 (174)
                      ++|+|||+|| +++.+.      ....+.+++ ...++|+||||+|+|+|+.+            ++|++.+.+..    
T Consensus        36 ~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~  114 (198)
T cd01748          36 SADKLILPGV-GAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLK  114 (198)
T ss_pred             cCCEEEECCC-CcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhccccccCCCCCCCCCcceEEEECCCCCCce
Confidence            6899999665 433221      123455554 56789999999999999998            78888886532    


Q ss_pred             -ccccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCc-eEEEeeCCCCceEEEecCCCC
Q 030626           70 -VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGL-IMAARHKKYKHLQGVQFHPES  147 (174)
Q Consensus        70 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~-i~a~~~~~~~~~~g~QfHPE~  147 (174)
                       .++|... +...  .++++|+++++.+.++++|++.+..   + +.+.++|+++++. .+++. .+. ++||+|||||+
T Consensus       115 ~~~~G~~~-v~~~--~~~~lf~~l~~~~~v~~~Hs~~v~~---~-~~~~~la~s~~~~~~~~~~-~~~-~i~GvQFHPE~  185 (198)
T cd01748         115 VPHMGWNQ-LEIT--KESPLFKGIPDGSYFYFVHSYYAPP---D-DPDYILATTDYGGKFPAAV-EKD-NIFGTQFHPEK  185 (198)
T ss_pred             EEEeccce-EEEC--CCChhhhCCCCCCeEEEEeEEEEec---C-CcceEEEEecCCCeEEEEE-EcC-CEEEEECCCcc
Confidence             1334443 3332  4678999999999999999999974   3 4577889887654 44443 333 49999999999


Q ss_pred             cCCCchHHHHHHHH
Q 030626          148 IITTEGKTIVRNFI  161 (174)
Q Consensus       148 ~~~~~~~~l~~~f~  161 (174)
                      . ++.|..+++||+
T Consensus       186 ~-~~~g~~~~~nf~  198 (198)
T cd01748         186 S-GKAGLKLLKNFL  198 (198)
T ss_pred             c-cHhHHHHHHhhC
Confidence            5 678999999995

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=99.94  E-value=4.2e-26  Score=170.18  Aligned_cols=141  Identities=19%  Similarity=0.242  Sum_probs=98.9

Q ss_pred             CCCEEEeCCCCCCCCCcc------hhHHHHHH-cCCCCcEEeehHhHHHHHHH-----------hCCeeccCCC----cc
Q 030626           13 NPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVPLFGVCMGLQCIGEA-----------FGGKIVRSPL----GV   70 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~------~~~~~i~~-~~~~~PilGIC~G~Qll~~~-----------~gg~v~~~~~----~~   70 (174)
                      ++|+||+ ||++++....      .+.+.+++ ...++|+||||+|||+|+..           +.|++.+.+.    ..
T Consensus        39 ~~d~iIl-PG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~~~~~~~  117 (210)
T CHL00188         39 QVHALVL-PGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVKVI  117 (210)
T ss_pred             hCCEEEE-CCCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEEEECCCCCCCcc
Confidence            5799886 5567654221      12234444 56789999999999999986           4567776632    22


Q ss_pred             cccccceeEeccCC----CCCcccCCCCceeecccccceecccCCCCCCcEEEEEc----CCCceEEEeeCCCCceEEEe
Q 030626           71 MHGKSSLVYYDEKG----EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT----EDGLIMAARHKKYKHLQGVQ  142 (174)
Q Consensus        71 ~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s----~~~~i~a~~~~~~~~~~g~Q  142 (174)
                      .|..|..+......    .+++|+++++.+.++++|++.+.+     ++...++.+    .++.+++++..   +++|+|
T Consensus       118 p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~~~v~~~HS~~v~p-----~~~~~l~~t~~~~~~~~v~a~~~~---~i~GvQ  189 (210)
T CHL00188        118 PHMGWNRLECQNSECQNSEWVNWKAWPLNPWAYFVHSYGVMP-----KSQACATTTTFYGKQQMVAAIEYD---NIFAMQ  189 (210)
T ss_pred             CccCCccceecCCcccccCChhhcCCCCCCEEEEeCccEecC-----CCCceEEEEEecCCcceEEEEecC---CEEEEe
Confidence            34556665544221    156999999999999999999853     223333333    24558999853   499999


Q ss_pred             cCCCCcCCCchHHHHHHHHHH
Q 030626          143 FHPESIITTEGKTIVRNFIKM  163 (174)
Q Consensus       143 fHPE~~~~~~~~~l~~~f~~~  163 (174)
                      ||||+. ++.|..|++||+++
T Consensus       190 FHPE~s-~~~G~~il~nfl~~  209 (210)
T CHL00188        190 FHPEKS-GEFGLWLLREFMKK  209 (210)
T ss_pred             cCCccc-cHhHHHHHHHHHhh
Confidence            999995 88999999999975

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.94  E-value=4e-26  Score=170.27  Aligned_cols=143  Identities=31%  Similarity=0.422  Sum_probs=104.5

Q ss_pred             CCCEEEeCCCCCCCCCc------chhHHHHHH-cCCCCcEEeehHhHHHHHHH------------hCCeeccCCCc----
Q 030626           13 NPRGVLISPGPGAPQDS------GISLQTVLE-LGPTVPLFGVCMGLQCIGEA------------FGGKIVRSPLG----   69 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~------~~~~~~i~~-~~~~~PilGIC~G~Qll~~~------------~gg~v~~~~~~----   69 (174)
                      ++|+|||+|| +...+.      ....+.+++ ...++|+||||+|+|+|+.+            +++++.+.+.+    
T Consensus        37 ~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~~~~~~~  115 (205)
T PRK13141         37 AADGVILPGV-GAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPPEEGLK  115 (205)
T ss_pred             cCCEEEECCC-CchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccceEEEEEEEcCCCCCCc
Confidence            6899999875 332221      123344554 56789999999999999997            67888876521    


Q ss_pred             ccccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCC-ceEEEeeCCCCceEEEecCCCCc
Q 030626           70 VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESI  148 (174)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~-~i~a~~~~~~~~~~g~QfHPE~~  148 (174)
                      ..+..+..+...  .++++|+.++..+.++.+|++.+.    +++++.++|+++++ .++++....  ++||+|||||+.
T Consensus       116 ~~~~g~~~i~~~--~~~~l~~~l~~~~~v~~~Hs~~v~----~~~~~~v~a~~~~~~~~~a~~~~~--~i~GvQfHPE~~  187 (205)
T PRK13141        116 VPHMGWNQLELK--KESPLLKGIPDGAYVYFVHSYYAD----PCDEEYVAATTDYGVEFPAAVGKD--NVFGAQFHPEKS  187 (205)
T ss_pred             ccEecCccceeC--CCChhhhCCCCCCEEEEECeeEec----cCCcCeEEEEEeCCcEEEEEEecC--CEEEEeCCCccc
Confidence            123233334333  367899999888888899999995    35678899988766 677876543  599999999985


Q ss_pred             CCCchHHHHHHHHHHHH
Q 030626          149 ITTEGKTIVRNFIKMIV  165 (174)
Q Consensus       149 ~~~~~~~l~~~f~~~~~  165 (174)
                       .+.+.+||+||++.|.
T Consensus       188 -~~~g~~l~~~fl~~~~  203 (205)
T PRK13141        188 -GDVGLKILKNFVEMVE  203 (205)
T ss_pred             -hHHHHHHHHHHHHHhh
Confidence             5689999999998763

>PRK05380 pyrG CTP synthetase; Validated

Probab=99.93  E-value=1.6e-25  Score=183.94  Aligned_cols=156  Identities=17%  Similarity=0.272  Sum_probs=103.9

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHHHH-HcCCCCcEEeehHhHHHHHHHhCCeeccCCC--ccccc--ccceeE-e-c----
Q 030626           13 NPRGVLISPGPGAPQDSGISLQTVL-ELGPTVPLFGVCMGLQCIGEAFGGKIVRSPL--GVMHG--KSSLVY-Y-D----   81 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~i~-~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~--~~~~~--~~~~~~-~-~----   81 (174)
                      ++||||++||+|.....+.. ..++ .+..++|+||||+|||+|+.++|+++.....  ..+..  ...++. . .    
T Consensus       343 ~~DGIIlpGGfG~~~~~g~i-~~i~~a~e~~iPiLGIClGmQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~  421 (533)
T PRK05380        343 GVDGILVPGGFGERGIEGKI-LAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKD  421 (533)
T ss_pred             cCCEEEecCCCCccccccHH-HHHHHHHHCCCcEEEEchHHHHHHHHhcccccCcccCcccccCCCCCCCeEeecccccc
Confidence            68999999999986655443 3443 3567899999999999999999999953321  11111  001110 0 0    


Q ss_pred             ---------------cCCCCCcccCCC--Cceeecccccceeccc---CCCCCCcEEEEEcCC-CceEEEeeCCCCceEE
Q 030626           82 ---------------EKGEDGLLAGLS--NPFTAGRYHSLVIEKE---SFPSDALEVTAWTED-GLIMAARHKKYKHLQG  140 (174)
Q Consensus        82 ---------------~~~~~~l~~~~~--~~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~-~~i~a~~~~~~~~~~g  140 (174)
                                     ...+++++..+.  ......+.|.+.|++.   .+...+++++|+++| +.|++++.+++|+++|
T Consensus       422 ~~~~ggtmrlg~h~v~i~~gS~l~~iyg~~~i~ErhrHryeVNs~h~qal~~~GL~vsa~s~DgglVEaIEl~~hpfflG  501 (533)
T PRK05380        422 VSDLGGTMRLGAYPCKLKPGTLAAEIYGKEEIYERHRHRYEVNNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVG  501 (533)
T ss_pred             ccccCCcccccceeEEECCCChHHHHhCCCceeeecccceecCHHHHHHHhhcCeEEEEEcCCCCcEEEEEeCCCCEEEE
Confidence                           001223333322  1223344555555431   122358999999976 5999999999998889


Q ss_pred             EecCCCCcCCC-chHHHHHHHHHHHHHHHH
Q 030626          141 VQFHPESIITT-EGKTIVRNFIKMIVRKEA  169 (174)
Q Consensus       141 ~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~  169 (174)
                      +|||||+.+.+ ++.+||.+|++++.+.+.
T Consensus       502 VQwHPE~~s~p~~~~pLF~~FV~Aa~~~~~  531 (533)
T PRK05380        502 VQFHPEFKSRPRRPHPLFAGFVKAALENKK  531 (533)
T ss_pred             EeCCCCCCCCCCchHHHHHHHHHHHHHHhh
Confidence            99999998765 578999999999987543

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.93  E-value=1.6e-25  Score=166.59  Aligned_cols=143  Identities=21%  Similarity=0.317  Sum_probs=100.7

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcch------hHHHHHH--cCCCCcEEeehHhHHHHHHH------------hCCeecc
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGI------SLQTVLE--LGPTVPLFGVCMGLQCIGEA------------FGGKIVR   65 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~------~~~~i~~--~~~~~PilGIC~G~Qll~~~------------~gg~v~~   65 (174)
                      .+++.  ++|+||| +|++++.+...      +...+++  +..++|+||||+|||+|+.+            ++|++.+
T Consensus        32 ~~~l~--~~d~lil-PG~g~~~~~~~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg~~~g~v~~  108 (201)
T PRK13152         32 PKDLQ--KADKLLL-PGVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFIEGEVVK  108 (201)
T ss_pred             HHHHc--CCCEEEE-CCCCchHHHHHHHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhcccccCCcCCcccccEEEEE
Confidence            34453  5899999 66677654422      2234443  46789999999999999987            1256655


Q ss_pred             CCC----cccccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCC--ceEEEeeCCCCceE
Q 030626           66 SPL----GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG--LIMAARHKKYKHLQ  139 (174)
Q Consensus        66 ~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~--~i~a~~~~~~~~~~  139 (174)
                      ...    ...++.|..+...  .++++|+++++.+.++++|++.+..   ++  ..+++.++++  .+++++.  . +++
T Consensus       109 ~~~~~~~~~~~~g~~~v~~~--~~~~l~~~l~~~~~~~~vHS~~v~~---~~--~~v~a~~~~g~~~~~a~~~--~-~i~  178 (201)
T PRK13152        109 FEEDLNLKIPHMGWNELEIL--KQSPLYQGIPEKSDFYFVHSFYVKC---KD--EFVSAKAQYGHKFVASLQK--D-NIF  178 (201)
T ss_pred             CCCCCCCcCCccCeEEEEEC--CCChhhhCCCCCCeEEEEcccEeec---CC--CcEEEEECCCCEEEEEEec--C-CEE
Confidence            431    1235566666543  4678999998888999999999964   32  4567777665  3556653  2 599


Q ss_pred             EEecCCCCcCCCchHHHHHHHHH
Q 030626          140 GVQFHPESIITTEGKTIVRNFIK  162 (174)
Q Consensus       140 g~QfHPE~~~~~~~~~l~~~f~~  162 (174)
                      |+|||||+. .+.+..||+||++
T Consensus       179 GvQFHPE~~-~~~g~~ll~~Fl~  200 (201)
T PRK13152        179 ATQFHPEKS-QNLGLKLLENFAR  200 (201)
T ss_pred             EEeCCCeec-ChhhHHHHHHHHh
Confidence            999999985 6689999999986

>TIGR00337 PyrG CTP synthase

Probab=99.93  E-value=1.4e-25  Score=184.16  Aligned_cols=150  Identities=18%  Similarity=0.233  Sum_probs=104.9

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHHHH-HcCCCCcEEeehHhHHHHHHHhCCeeccCCCccc----ccccceeEeccC----
Q 030626           13 NPRGVLISPGPGAPQDSGISLQTVL-ELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVM----HGKSSLVYYDEK----   83 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~i~-~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~----~~~~~~~~~~~~----   83 (174)
                      ++||||++||++++...+.. ..++ .+..++|+||||+|||+|+.++|+++..++....    .+...++.....    
T Consensus       343 ~~dGIiLpGG~G~~~~~g~i-~ai~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~  421 (525)
T TIGR00337       343 GVDGILVPGGFGERGVEGKI-LAIKYARENNIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKD  421 (525)
T ss_pred             CCCEEEeCCCCCChhhcChH-HHHHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccc
Confidence            48999999999998765554 3333 3567899999999999999999999888763211    011222211000    


Q ss_pred             -----------------CCCCcccCC-C-Cceeecccccceeccc---CCCCCCcEEEEEcCC-CceEEEeeCCCCceEE
Q 030626           84 -----------------GEDGLLAGL-S-NPFTAGRYHSLVIEKE---SFPSDALEVTAWTED-GLIMAARHKKYKHLQG  140 (174)
Q Consensus        84 -----------------~~~~l~~~~-~-~~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~-~~i~a~~~~~~~~~~g  140 (174)
                                       .+++++..+ . ......+.|++.|+..   .+...+++++|++.| +.|+|++.+++|+++|
T Consensus       422 ~~~~GGTmRLG~h~v~i~~gS~L~~iyG~~~i~erhrHry~VNs~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~~hpfflG  501 (525)
T TIGR00337       422 ISDLGGTMRLGLYPCILKPGTLAFKLYGKEEVYERHRHRYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVA  501 (525)
T ss_pred             cccCCceeeccceEEEECCCChHHHHhCCCceeecccceEEECHHHHHhhhhCCeEEEEEECCCCEEEEEEECCCCeEEE
Confidence                             112222222 1 1234567788888652   233479999999988 5899999999998889


Q ss_pred             EecCCCCcCCC-chHHHHHHHHHH
Q 030626          141 VQFHPESIITT-EGKTIVRNFIKM  163 (174)
Q Consensus       141 ~QfHPE~~~~~-~~~~l~~~f~~~  163 (174)
                      +|||||+.+.+ +..+||..|+++
T Consensus       502 VQwHPE~~s~p~~~~~LF~~FV~A  525 (525)
T TIGR00337       502 CQFHPEFTSRPNRPHPLFLGFVKA  525 (525)
T ss_pred             EecCCCCCCCCCchhHHHHHHHhC
Confidence            99999998765 567999999863

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.93  E-value=1.2e-25  Score=167.02  Aligned_cols=140  Identities=25%  Similarity=0.303  Sum_probs=97.4

Q ss_pred             CCCEEEeCCCCCCCCCc------chhHHHHHH-cCCCCcEEeehHhHHHHHHH-----------hCCeeccCCCc----c
Q 030626           13 NPRGVLISPGPGAPQDS------GISLQTVLE-LGPTVPLFGVCMGLQCIGEA-----------FGGKIVRSPLG----V   70 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~------~~~~~~i~~-~~~~~PilGIC~G~Qll~~~-----------~gg~v~~~~~~----~   70 (174)
                      ++|+||++|| +++...      ....+.+++ ...++|+||||+|+|+|+.+           +++++.+.+..    .
T Consensus        37 ~~d~lilpG~-g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~~~~~~~~  115 (199)
T PRK13181         37 GADKVILPGV-GAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSEPLKVP  115 (199)
T ss_pred             cCCEEEECCC-CCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcCCCCCCCC
Confidence            6899998765 433211      112344443 56789999999999999999           77888886532    2


Q ss_pred             cccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCC
Q 030626           71 MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIIT  150 (174)
Q Consensus        71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~  150 (174)
                      +.|.. .+...  .++++|+++++.+.++.+|++.+..   + +.+.++|+++++........+. ++||+|||||+. +
T Consensus       116 ~~G~~-~v~~~--~~~~lf~~l~~~~~~~~~Hs~~v~~---~-~~~~~lA~s~~~~~~~~~~~~~-~i~GvQFHPE~~-~  186 (199)
T PRK13181        116 QMGWN-SVKPL--KESPLFKGIEEGSYFYFVHSYYVPC---E-DPEDVLATTEYGVPFCSAVAKD-NIYAVQFHPEKS-G  186 (199)
T ss_pred             ccCcc-ccccC--CCChhHcCCCCCCEEEEeCeeEecc---C-CcccEEEEEcCCCEEEEEEECC-CEEEEECCCccC-C
Confidence            23333 23222  4678999999889999999999864   3 3456888887644322222233 499999999985 6


Q ss_pred             CchHHHHHHHHH
Q 030626          151 TEGKTIVRNFIK  162 (174)
Q Consensus       151 ~~~~~l~~~f~~  162 (174)
                      +.+..|++||++
T Consensus       187 ~~g~~ll~nfl~  198 (199)
T PRK13181        187 KAGLKLLKNFAE  198 (199)
T ss_pred             HHHHHHHHHHHh
Confidence            789999999986

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=99.93  E-value=7.3e-25  Score=169.47  Aligned_cols=138  Identities=22%  Similarity=0.328  Sum_probs=97.0

Q ss_pred             CCCEEEeCCCCCCCCC--cchhH----HHHHH-c--CCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEec-c
Q 030626           13 NPRGVLISPGPGAPQD--SGISL----QTVLE-L--GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD-E   82 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~--~~~~~----~~i~~-~--~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~-~   82 (174)
                      .+||||++||+.+...  .....    +...+ .  +..+|+||||+|||+|+.++||++........++...++... .
T Consensus        54 ~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~~~~~~~~~~~l~~t~~  133 (273)
T cd01747          54 SINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFELLTYLTSGETLLLEATEATNSALPLNFTED  133 (273)
T ss_pred             hCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHHHhCCCccccCCCccccceEEEEEccc
Confidence            5899999999877642  22222    22222 1  235999999999999999999976443323345655555554 3


Q ss_pred             CCCCCcccCCCC--------ceeecccccceecccCCC-----CCCcEEEEEcCC--Cc--eEEEeeCCCCceEEEecCC
Q 030626           83 KGEDGLLAGLSN--------PFTAGRYHSLVIEKESFP-----SDALEVTAWTED--GL--IMAARHKKYKHLQGVQFHP  145 (174)
Q Consensus        83 ~~~~~l~~~~~~--------~~~~~~~H~~~v~~~~l~-----~~~~~~~a~s~~--~~--i~a~~~~~~~~~~g~QfHP  145 (174)
                      ..++++|++++.        ...++++|+++++++++.     ...+++++++.+  +.  |++++++++| ++|+||||
T Consensus       134 ~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l~~~~~vla~~~d~~g~~fis~ie~~~~p-i~gvQFHP  212 (273)
T cd01747         134 ALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSDFFNVLTTNDDWNGVEFISTVEAYKYP-IYGVQWHP  212 (273)
T ss_pred             cccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccccccceEEEEEEecCCCceEEEEEEecCCc-eEEEecCC
Confidence            346788888864        456889999999765443     245789998755  43  7899999887 99999999


Q ss_pred             CCcCCC
Q 030626          146 ESIITT  151 (174)
Q Consensus       146 E~~~~~  151 (174)
                      |+...+
T Consensus       213 Eks~fe  218 (273)
T cd01747         213 EKNAFE  218 (273)
T ss_pred             Cccccc
Confidence            986554

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PLN02327 CTP synthase

Probab=99.93  E-value=4.5e-25  Score=181.58  Aligned_cols=159  Identities=20%  Similarity=0.245  Sum_probs=111.6

Q ss_pred             cCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCc--cccc--ccceeE--ecc---
Q 030626           12 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG--VMHG--KSSLVY--YDE---   82 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~--~~~~--~~~~~~--~~~---   82 (174)
                      .++|||+++||+|+....+.....-+.+.+++|+||||+|||+++.+++.++..++..  .+..  ...++.  ..+   
T Consensus       361 ~~~DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClGmQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~  440 (557)
T PLN02327        361 KGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLGMQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSK  440 (557)
T ss_pred             ccCCEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhccc
Confidence            3689999999999887776654333346789999999999999999999988776521  1111  111111  100   


Q ss_pred             -C---------------CCCCcccCCCC---ceeecccccceeccc---CCCCCCcEEEEEcCCC-ceEEEeeCCCCceE
Q 030626           83 -K---------------GEDGLLAGLSN---PFTAGRYHSLVIEKE---SFPSDALEVTAWTEDG-LIMAARHKKYKHLQ  139 (174)
Q Consensus        83 -~---------------~~~~l~~~~~~---~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~-~i~a~~~~~~~~~~  139 (174)
                       .               .++++...+..   .....+.|+|+++++   .+...+++++|++.|+ .+++++..++++++
T Consensus       441 ~~~GGtMRLG~~~~~~~~~~S~l~~iYg~~~~VnerHrHRYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffv  520 (557)
T PLN02327        441 THMGGTMRLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFV  520 (557)
T ss_pred             ccCCceEECCCcccccCCCCCHHHHHhCCccceeeeeccccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEE
Confidence             0               01122222221   245677788888764   2335899999999887 69999999999777


Q ss_pred             EEecCCCCcCCC-chHHHHHHHHHHHHHHHHh
Q 030626          140 GVQFHPESIITT-EGKTIVRNFIKMIVRKEAA  170 (174)
Q Consensus       140 g~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~~  170 (174)
                      |+|||||+.+.+ +..++|..|++++.+...+
T Consensus       521 GVQfHPE~~s~p~~~~pLF~~Fv~Aa~~~~~~  552 (557)
T PLN02327        521 GVQFHPEFKSRPGKPSPLFLGLIAAASGQLDA  552 (557)
T ss_pred             EEEcCCCCCCCCCCchHHHHHHHHHHHHhHHh
Confidence            999999998765 4579999999999876554

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=99.92  E-value=2.4e-25  Score=160.25  Aligned_cols=132  Identities=20%  Similarity=0.238  Sum_probs=107.4

Q ss_pred             cCCCEEEeCCCCCCCCCcchhHHHHH----H-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEec-cCCC
Q 030626           12 KNPRGVLISPGPGAPQDSGISLQTVL----E-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD-EKGE   85 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~~~~~~~~~i~----~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~-~~~~   85 (174)
                      .+|||+||+|+..+......|+..+.    + ...++||+|||+|||++|++.||+|.+.+.+...+......+. ....
T Consensus        58 ~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~Vgra~KG~~~~lg~itivk~~~~~  137 (245)
T KOG3179|consen   58 EKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGRAPKGPDLGLGSITIVKDAEKP  137 (245)
T ss_pred             hhhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHhhCCccccCCCCCcccccceEEEEecccc
Confidence            36899999999999888877764432    3 2456999999999999999999999999876543333322222 2345


Q ss_pred             CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCc
Q 030626           86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESI  148 (174)
Q Consensus        86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~  148 (174)
                      ..+|..+|.++.....|++.+-.   +|.+++++|+|+++.++++...+  +++++|.|||+.
T Consensus       138 ~~yFG~~~~~l~IikcHqDevle---~PE~a~llasSe~ceve~fs~~~--~~l~fQGHPEyn  195 (245)
T KOG3179|consen  138 EKYFGEIPKSLNIIKCHQDEVLE---LPEGAELLASSEKCEVEMFSIED--HLLCFQGHPEYN  195 (245)
T ss_pred             hhhcccchhhhhHHhhcccceec---CCchhhhhccccccceEEEEecc--eEEEecCCchhh
Confidence            67888888899999999999977   78999999999999999999887  599999999984

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.92  E-value=7.6e-25  Score=162.76  Aligned_cols=142  Identities=30%  Similarity=0.387  Sum_probs=98.3

Q ss_pred             CCCEEEeCCCCCCCCCcch----hHHHHHH-cCCCCcEEeehHhHHHHHHH------------hCCeeccCCCcc--ccc
Q 030626           13 NPRGVLISPGPGAPQDSGI----SLQTVLE-LGPTVPLFGVCMGLQCIGEA------------FGGKIVRSPLGV--MHG   73 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~----~~~~i~~-~~~~~PilGIC~G~Qll~~~------------~gg~v~~~~~~~--~~~   73 (174)
                      ++|+|||+||. ...+...    ..+.+++ ..+++|+||||+|+|+|+.+            ++|++.+.+.+.  .+.
T Consensus        38 ~~d~iii~G~~-~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~  116 (200)
T PRK13143         38 DADGIVLPGVG-AFGAAMENLSPLRDVILEAARSGKPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHM  116 (200)
T ss_pred             cCCEEEECCCC-CHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhhhccCCCCCCcceeeEEEEEcCCCCCCCee
Confidence            68999998753 2222212    2234443 56789999999999999986            678887654211  122


Q ss_pred             ccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCC-ceEEEeeCCCCceEEEecCCCCcCCCc
Q 030626           74 KSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITTE  152 (174)
Q Consensus        74 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~-~i~a~~~~~~~~~~g~QfHPE~~~~~~  152 (174)
                      .+..+...  .+++++++++ ...++++|++.+.    ++++..++|+++++ .++++...+  ++||+|||||+. .+.
T Consensus       117 g~~~v~~~--~~~~l~~~l~-~~~~~~~Hs~~~~----~~~~~~~la~~~~~~~~~~~~~~~--~~~gvQfHPE~~-~~~  186 (200)
T PRK13143        117 GWNTVKVV--KDCPLFEGID-GEYVYFVHSYYAY----PDDEDYVVATTDYGIEFPAAVCND--NVFGTQFHPEKS-GET  186 (200)
T ss_pred             cceEEEEc--CCChhhccCC-CcEEEEEeeeeeC----CCCcceEEEEEcCCCEEEEEEEcC--CEEEEeCCCccc-hHH
Confidence            33334333  4677888884 4457789999886    34668899999875 445555443  599999999995 568


Q ss_pred             hHHHHHHHHHHHH
Q 030626          153 GKTIVRNFIKMIV  165 (174)
Q Consensus       153 ~~~l~~~f~~~~~  165 (174)
                      +.+||++|++.+.
T Consensus       187 g~~i~~~f~~~~~  199 (200)
T PRK13143        187 GLKILENFVELIK  199 (200)
T ss_pred             HHHHHHHHHHHHh
Confidence            8999999998753

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=99.92  E-value=9.1e-25  Score=161.86  Aligned_cols=138  Identities=24%  Similarity=0.287  Sum_probs=95.2

Q ss_pred             CCCEEEeCCCCCCCCCcchh-----HHHH-H-HcCCCCcEEeehHhHHHHHHH------------hCCeeccCCCc--cc
Q 030626           13 NPRGVLISPGPGAPQDSGIS-----LQTV-L-ELGPTVPLFGVCMGLQCIGEA------------FGGKIVRSPLG--VM   71 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~-----~~~i-~-~~~~~~PilGIC~G~Qll~~~------------~gg~v~~~~~~--~~   71 (174)
                      ++|+|||+| ++++.+....     .+.+ + .+..++|+||||+|+|+|+.+            +|+++.+.+..  .+
T Consensus        36 ~~d~lii~G-~~~~~~~~~~l~~~~~~~l~~~~~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~~~~~~~  114 (196)
T TIGR01855        36 LADKLILPG-VGAFGAAMARLRENGLDLFVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPH  114 (196)
T ss_pred             cCCEEEECC-CCCHHHHHHHHHHcCcHHHHHHHHhCCCCEEEECHHHHHhhhccccCCCCCCcceeeEEEEECCCCCCCc
Confidence            689999966 3443222111     2233 4 356789999999999999998            68888876421  12


Q ss_pred             ccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCC-CceEEEeeCCCCceEEEecCCCCcCC
Q 030626           72 HGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED-GLIMAARHKKYKHLQGVQFHPESIIT  150 (174)
Q Consensus        72 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~-~~i~a~~~~~~~~~~g~QfHPE~~~~  150 (174)
                      .+.. .+.  ....+++|+++++.+.++.+|++.+..   ++ +. +++.+++ +..+++ .... ++||+|||||+. .
T Consensus       115 ~g~~-~~~--~~~~~~l~~~l~~~~~v~~~Hs~~v~~---~~-~~-~~a~~~~g~~~~~~-~~~~-~i~GvQFHPE~~-~  183 (196)
T TIGR01855       115 MGWN-EVH--PVKESPLLNGIDEGAYFYFVHSYYAVC---EE-EA-VLAYADYGEKFPAA-VQKG-NIFGTQFHPEKS-G  183 (196)
T ss_pred             ccCe-eee--eCCCChHHhCCCCCCEEEEECeeEecC---CC-Cc-EEEEEcCCcEEEEE-EecC-CEEEEECCCccC-c
Confidence            3332 222  234678999999999999999999975   33 44 5665655 444444 3333 499999999985 6


Q ss_pred             CchHHHHHHHHH
Q 030626          151 TEGKTIVRNFIK  162 (174)
Q Consensus       151 ~~~~~l~~~f~~  162 (174)
                      +.+..|++||++
T Consensus       184 ~~g~~ll~~f~~  195 (196)
T TIGR01855       184 KTGLKLLENFLE  195 (196)
T ss_pred             HhHHHHHHHHHh
Confidence            789999999986

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=99.92  E-value=9.9e-25  Score=175.19  Aligned_cols=156  Identities=19%  Similarity=0.268  Sum_probs=116.1

Q ss_pred             CCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCc--cccc---ccceeEe-cc-----
Q 030626           14 PRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG--VMHG---KSSLVYY-DE-----   82 (174)
Q Consensus        14 ~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~--~~~~---~~~~~~~-~~-----   82 (174)
                      +|||+++||.|....+++....-+++.+++|+||||+|||+++..+..+|..+...  .+..   ....+.. .+     
T Consensus       344 ~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~  423 (533)
T COG0504         344 VDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVV  423 (533)
T ss_pred             CCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCC
Confidence            89999999999988889887777788999999999999999998777655554311  0110   1111110 00     


Q ss_pred             --------------CCCCCcccCCC--Cceeecccccceeccc---CCCCCCcEEEEEcCC-CceEEEeeCCCCceEEEe
Q 030626           83 --------------KGEDGLLAGLS--NPFTAGRYHSLVIEKE---SFPSDALEVTAWTED-GLIMAARHKKYKHLQGVQ  142 (174)
Q Consensus        83 --------------~~~~~l~~~~~--~~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~-~~i~a~~~~~~~~~~g~Q  142 (174)
                                    ....++...+.  +.....+.|.|.++++   .+...|+++.++|.| ..++.+|..++|+++|+|
T Consensus       424 ~lGGTmRLG~y~~~l~~gT~a~~lY~~~~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~Q  503 (533)
T COG0504         424 DLGGTMRLGAYPCRLKPGTLAAKLYGKDEIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQ  503 (533)
T ss_pred             cCCceeeccceeeecCCCcHHHHHhCCCeeeeeccchhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEc
Confidence                          01222333332  3566678889999764   456689999999987 469999999999999999


Q ss_pred             cCCCCcCCC-chHHHHHHHHHHHHHHHH
Q 030626          143 FHPESIITT-EGKTIVRNFIKMIVRKEA  169 (174)
Q Consensus       143 fHPE~~~~~-~~~~l~~~f~~~~~~~~~  169 (174)
                      ||||+.+.+ ++.++|..|++++.+...
T Consensus       504 fHPEf~SrP~~phPlf~~fv~Aa~~~~~  531 (533)
T COG0504         504 FHPEFKSRPLRPHPLFVGFVKAALEYKK  531 (533)
T ss_pred             ccccccCCCCCCCccHHHHHHHHHHhhc
Confidence            999999887 678999999999887654

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=99.89  E-value=3.5e-23  Score=151.79  Aligned_cols=131  Identities=25%  Similarity=0.389  Sum_probs=91.8

Q ss_pred             CCCEEEeCCCCCCCCCc----chhHHHHHH-cCCCCcEEeehHhHHHHHHHhCC------------eeccCCCccccccc
Q 030626           13 NPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGG------------KIVRSPLGVMHGKS   75 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~----~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg------------~v~~~~~~~~~~~~   75 (174)
                      ++|+||++||+.+..+.    ..+.+.+++ ...++|+||||+|+|+|+.++++            ++.++..++..+..
T Consensus        35 ~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~~~~~~~~~glG~~~~~v~~~~~g~~~g~~  114 (183)
T cd01749          35 GIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLILLAKEVEDQGGQPLLGLLDITVRRNAFGRQVDSF  114 (183)
T ss_pred             cCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHHHHHHHhcccCCCCccCceeEEEEeeccccccceE
Confidence            68999999998755432    123344554 56789999999999999999998            55554433322211


Q ss_pred             ceeEeccCCCCCcccCC-CCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchH
Q 030626           76 SLVYYDEKGEDGLLAGL-SNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGK  154 (174)
Q Consensus        76 ~~~~~~~~~~~~l~~~~-~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~  154 (174)
                      .        ....+.++ ++.+.++++|.+.+..   ++++++++|.++++. ++++..   ++||+|||||..   ...
T Consensus       115 ~--------~~l~~~~~~~~~~~~~~~h~~~v~~---~p~~~~~la~~~~~~-~a~~~~---~~~g~qfHPE~~---~~~  176 (183)
T cd01749         115 E--------ADLDIPGLGLGPFPAVFIRAPVIEE---VGPGVEVLAEYDGKI-VAVRQG---NVLATSFHPELT---DDT  176 (183)
T ss_pred             E--------EcCCCCcCCCCccEEEEEECcEEEE---cCCCcEEEEecCCEE-EEEEEC---CEEEEEcCCccC---CCc
Confidence            0        01123333 3678899999999976   778999999997655 477654   499999999985   335


Q ss_pred             HHHHHHH
Q 030626          155 TIVRNFI  161 (174)
Q Consensus       155 ~l~~~f~  161 (174)
                      ++++.|+
T Consensus       177 ~~~~~f~  183 (183)
T cd01749         177 RIHEYFL  183 (183)
T ss_pred             chhhhhC
Confidence            7777774

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=99.89  E-value=3.6e-22  Score=155.27  Aligned_cols=153  Identities=16%  Similarity=0.171  Sum_probs=111.8

Q ss_pred             HHHHHhcCCCEEEeCCCCCC--CCCcch-h--HHHHHH--cCCCCcEEeehHhHHHHHHHhCCeeccCCCccccccccee
Q 030626            6 LVSYCRKNPRGVLISPGPGA--PQDSGI-S--LQTVLE--LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLV   78 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~--~~~~~~-~--~~~i~~--~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~   78 (174)
                      ++++...++||+||+|+|..  .++... |  +..+.+  ....+|+||||+|+|+++.++||...........|.....
T Consensus        92 ~~~i~~~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~~~~  171 (302)
T PRK05368         92 FEDIKDEKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEHR  171 (302)
T ss_pred             HHHhccCCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEEEEE
Confidence            45677778999999999988  555544 3  233332  3457999999999999999999973322222345544332


Q ss_pred             EeccCCCCCcccCCCCceeecccccceecccCC-CCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHH
Q 030626           79 YYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIV  157 (174)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~  157 (174)
                      ..  ...+++++++++.+.+.++|...|..+.+ .+++++++|.|+.+.++++..++. .++++|+|||+    +...|.
T Consensus       172 ~~--~~~~pL~~g~~d~F~~phSr~~~V~~~~i~~~~~l~vLA~S~~~gv~~~~~~~~-r~~~vQgHPEY----d~~tL~  244 (302)
T PRK05368        172 VL--DPHHPLLRGFDDSFLVPHSRYTEVREEDIRAATGLEILAESEEAGVYLFASKDK-REVFVTGHPEY----DADTLA  244 (302)
T ss_pred             Ec--CCCChhhcCCCCccccceeehhhccHHHhccCCCCEEEecCCCCCeEEEEeCCC-CEEEEECCCCC----CHHHHH
Confidence            22  23779999999999999999888854322 558999999999999999988665 49999999999    455566


Q ss_pred             HHHHHHHH
Q 030626          158 RNFIKMIV  165 (174)
Q Consensus       158 ~~f~~~~~  165 (174)
                      +.+.+.+.
T Consensus       245 ~EY~RD~~  252 (302)
T PRK05368        245 QEYFRDLG  252 (302)
T ss_pred             HHHHHHHh
Confidence            66665544

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=99.88  E-value=1.8e-22  Score=147.91  Aligned_cols=132  Identities=19%  Similarity=0.296  Sum_probs=89.8

Q ss_pred             CCCEEEeCCCCCCCCC----cchhHHHHHH-cCCCCcEEeehHhHHHHHHHhC-----------CeeccCCCcccccccc
Q 030626           13 NPRGVLISPGPGAPQD----SGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG-----------GKIVRSPLGVMHGKSS   76 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~----~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~g-----------g~v~~~~~~~~~~~~~   76 (174)
                      ++|+|||+||+++..+    ...+...+++ ...++|+||||+|+|+|+.++.           +++.++..+...+...
T Consensus        36 ~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~~~~~~~~~lg~~~~~v~~~~~g~~~~s~~  115 (184)
T TIGR03800        36 EIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKEIIGQKEGYLGLLDMTVERNAYGRQVDSFE  115 (184)
T ss_pred             cCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhhhccCCCCccCcEEEEEEeeccCCccccEE
Confidence            6899999999776522    2234455554 5678999999999999999973           4555544333222222


Q ss_pred             eeEeccCCCCCcccCCC-CceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHH
Q 030626           77 LVYYDEKGEDGLLAGLS-NPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKT  155 (174)
Q Consensus        77 ~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~  155 (174)
                      .....        ..+. +.+...+.|.+.+..   ++++++++|+++++ +.|++..   ++||+|||||+.   ...+
T Consensus       116 ~~l~~--------~~~~~~~~~~~~~h~~~v~~---lp~~~~vla~~~~~-~~a~~~~---~~~gvQfHPE~~---~~~~  177 (184)
T TIGR03800       116 AEVDI--------KGVGDDPITGVFIRAPKIVS---VGNGVEILAKVGNR-IVAVRQG---NILVSSFHPELT---DDHR  177 (184)
T ss_pred             EEeec--------ccCCCCcceEEEEcCCCccc---CCCCeEEEEEeCCe-eEEEEeC---CEEEEEeCCccC---CCch
Confidence            11111        1111 235666899999987   78999999998764 4677543   499999999985   3348


Q ss_pred             HHHHHHH
Q 030626          156 IVRNFIK  162 (174)
Q Consensus       156 l~~~f~~  162 (174)
                      +++.|++
T Consensus       178 ~~~~f~~  184 (184)
T TIGR03800       178 VHEYFLE  184 (184)
T ss_pred             HHHHhhC
Confidence            8888873

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=99.87  E-value=8.9e-22  Score=144.35  Aligned_cols=137  Identities=21%  Similarity=0.219  Sum_probs=82.6

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcch------hHHHHHHcCCCCcEEeehHhHHHHHHHh--C---------CeeccCCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGI------SLQTVLELGPTVPLFGVCMGLQCIGEAF--G---------GKIVRSPL   68 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~------~~~~i~~~~~~~PilGIC~G~Qll~~~~--g---------g~v~~~~~   68 (174)
                      .+++.  ++|+||+||+ +++.+...      +.+.+++ ..++|+||||+|||+|+...  |         ++|.+.+.
T Consensus        32 ~~~l~--~~D~lIlPG~-g~~~~~~~~L~~~gl~~~i~~-~~g~PvlGIClGmQlL~~~~~eg~~~GLgll~~~V~rf~~  107 (192)
T PRK13142         32 SKIID--QAETIILPGV-GHFKDAMSEIKRLNLNAILAK-NTDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNISRIQT  107 (192)
T ss_pred             HHHhc--cCCEEEECCC-CCHHHHHHHHHHCCcHHHHHH-hCCCeEEEECHHHHHHhhhcccCCcCccCceeEEEEECCC
Confidence            34553  5899977654 55433322      3344555 56899999999999999875  1         33333321


Q ss_pred             c--ccccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCC
Q 030626           69 G--VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPE  146 (174)
Q Consensus        69 ~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE  146 (174)
                      .  .+|..|+.+..    ..++++     ..+++.|++.+.    .......++.-....+.+++..   +++|+|||||
T Consensus       108 ~~~vph~GWn~~~~----~~~l~~-----~~~yFVhSy~v~----~~~~v~~~~~yg~~~~~~v~~~---n~~g~QFHPE  171 (192)
T PRK13142        108 EYPVPHLGWNNLVS----KHPMLN-----QDVYFVHSYQAP----MSENVIAYAQYGADIPAIVQFN---NYIGIQFHPE  171 (192)
T ss_pred             CCCCCcccccccCC----CCcccc-----cEEEEECCCeEC----CCCCEEEEEECCCeEEEEEEcC---CEEEEecCcc
Confidence            1  12333332211    233332     357999999983    2233333333222234555432   5999999999


Q ss_pred             CcCCCchHHHHHHHHHH
Q 030626          147 SIITTEGKTIVRNFIKM  163 (174)
Q Consensus       147 ~~~~~~~~~l~~~f~~~  163 (174)
                      + +...|.+|++||++-
T Consensus       172 k-S~~~G~~ll~nf~~~  187 (192)
T PRK13142        172 K-SGTYGLQILRQAIQG  187 (192)
T ss_pred             c-CcHhHHHHHHHHHhc
Confidence            9 678999999999864

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=99.87  E-value=1.6e-21  Score=162.38  Aligned_cols=146  Identities=24%  Similarity=0.280  Sum_probs=99.2

Q ss_pred             CCCEEEeCCCCCCCCCcc------hhHHHHHH-cCCCCcEEeehHhHHHHHHHh---------C---CeeccCCC----c
Q 030626           13 NPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVPLFGVCMGLQCIGEAF---------G---GKIVRSPL----G   69 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~------~~~~~i~~-~~~~~PilGIC~G~Qll~~~~---------g---g~v~~~~~----~   69 (174)
                      ++|+|||+|+ +++....      .+.+.+++ +..++|+||||+|||+|+.++         |   |++.+...    .
T Consensus        44 ~~D~lIlpG~-gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~~~~~  122 (538)
T PLN02617         44 NADRLIFPGV-GAFGSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLR  122 (538)
T ss_pred             cCCEEEECCC-CCHHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCccCCCC
Confidence            6899999764 4433211      13344554 567899999999999999873         2   56655431    1


Q ss_pred             ccccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcC--CCceEEEeeCCCCceEEEecCCCC
Q 030626           70 VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE--DGLIMAARHKKYKHLQGVQFHPES  147 (174)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~--~~~i~a~~~~~~~~~~g~QfHPE~  147 (174)
                      ..+..|..+...  .++++|.+++ ...++++|+|.+..  ++.....++++++  ++.+++++..   ++||+|||||+
T Consensus       123 vp~iGw~~V~~~--~~spL~~~l~-~~~vy~vHSy~v~~--~p~~~~~v~a~~~~g~~~IaAI~~g---nI~GVQFHPE~  194 (538)
T PLN02617        123 VPHIGWNALQIT--KDSELLDGVG-GRHVYFVHSYRATP--SDENKDWVLATCNYGGEFIASVRKG---NVHAVQFHPEK  194 (538)
T ss_pred             CCeecceEEEec--CCChhHhcCC-CcEEEEEeEEEEEe--cCCCCcEEEEEEccCCCcEEEEEeC---CEEEEEcCCcc
Confidence            223445555433  4678998885 45688999998754  1323344555554  4578999864   49999999999


Q ss_pred             cCCCchHHHHHHHHHHHHHHH
Q 030626          148 IITTEGKTIVRNFIKMIVRKE  168 (174)
Q Consensus       148 ~~~~~~~~l~~~f~~~~~~~~  168 (174)
                      + .+.|.+||++|++.+.+..
T Consensus       195 s-~~~G~~L~~nFl~~~~~~~  214 (538)
T PLN02617        195 S-GATGLSILRRFLEPKSSAT  214 (538)
T ss_pred             C-chhHHHHHHHHHHhhhhhh
Confidence            5 4788999999999877543

>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=1.2e-21  Score=158.33  Aligned_cols=149  Identities=30%  Similarity=0.558  Sum_probs=110.0

Q ss_pred             CCCEEEeCCCCCCCCCc--chhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccC-CCCCcc
Q 030626           13 NPRGVLISPGPGAPQDS--GISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK-GEDGLL   89 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~--~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~-~~~~l~   89 (174)
                      -+|+||+++|||+|.-.  ......+....+.+||||||+|||.|+.+-|+.|.... ...||....+.+... .-+.++
T Consensus        64 ~FDaIVVgPGPG~P~~a~d~gI~~rl~~~~~~iPilGICLGfQal~l~hGA~v~~~n-~p~HGrvs~i~~~~~~~f~gi~  142 (767)
T KOG1224|consen   64 AFDAIVVGPGPGSPMCAADIGICLRLLLECRDIPILGICLGFQALGLVHGAHVVHAN-EPVHGRVSGIEHDGNILFSGIP  142 (767)
T ss_pred             ccceEEecCCCCCCCcHHHHHHHHHHHHhcCCCceeeeehhhHhHhhhcccceecCC-CcccceeeeEEecCcEEEccCC
Confidence            48999999999999422  22344455556689999999999999999999998544 455777665554311 123334


Q ss_pred             cCCCCceeecccccceecccCCCCCCcEEEEEcCC-C--ceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626           90 AGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED-G--LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV  165 (174)
Q Consensus        90 ~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~-~--~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~  165 (174)
                      .+-+..+.+.-+|+..+++  ++-+-+.+++++.| .  .++++.+++.| -||+|||||...++.|.+||+||++...
T Consensus       143 sg~~~~fK~~RYHSL~in~--~pid~l~il~t~~ddng~ilMsi~~~~fP-hfG~qyHPES~~s~~g~~lfkNFl~lt~  218 (767)
T KOG1224|consen  143 SGRNSDFKVVRYHSLIINS--LPIDLLPILWTIYDDNGHILMSIMHSSFP-HFGLQYHPESIASTYGSQLFKNFLDLTV  218 (767)
T ss_pred             CCCcccceeEEeEEEEecC--CchhhhcceeEeecCCceEEEEeeccCCC-ccceeeChHHhhhhhhHHHHHHHHHhhc
Confidence            4444678888999999886  34345566666533 2  47788888887 7999999999888999999999998754

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=99.86  E-value=2.7e-21  Score=146.21  Aligned_cols=148  Identities=18%  Similarity=0.227  Sum_probs=95.3

Q ss_pred             CCCEEEeCCCCCCCCC--------cchhHHHHHH-cCCCCcEEeehHhHHHHHHH--hCCeeccCCCcccccc-cceeEe
Q 030626           13 NPRGVLISPGPGAPQD--------SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMHGK-SSLVYY   80 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~--------~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~--~gg~v~~~~~~~~~~~-~~~~~~   80 (174)
                      ++|+|||+||+.....        .....+.+++ ...++|++|||.|+|+|+.+  ++|++.+.... .++. |..+..
T Consensus        40 ~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~~n~~~-~~~~~~~~~~v  118 (227)
T TIGR01737        40 DYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGALLPNDSL-RFICRWVYLRV  118 (227)
T ss_pred             CCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCceeecCCC-ceEEEeEEEEE
Confidence            6899999999753211        1123344544 56789999999999999996  88988887643 2322 333333


Q ss_pred             ccCCCCCcccCCCCc--eeecccccce---eccc---CCCCCCcEEEEEc-----------CC---CceEEEeeCCCCce
Q 030626           81 DEKGEDGLLAGLSNP--FTAGRYHSLV---IEKE---SFPSDALEVTAWT-----------ED---GLIMAARHKKYKHL  138 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~--~~~~~~H~~~---v~~~---~l~~~~~~~~a~s-----------~~---~~i~a~~~~~~~~~  138 (174)
                      . ..+++++++++..  +.....|.++   ++++   .+...+..++.+.           ++   ..|+++++++++ +
T Consensus       119 ~-~~~~~~~~~~~~g~~~~~pi~H~eG~y~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i~~i~~~~~~-~  196 (227)
T TIGR01737       119 E-NADTIFTKNYKKGEVIRIPIAHGEGRYYADDETLARLESNDQVVFRYCDEDGDVAEEANPNGSVGNIAGIVNERGN-V  196 (227)
T ss_pred             C-CCCChhhccCCCCCEEEEEeEcCCcCeEcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCCHHHHcccCCCCCC-E
Confidence            2 3456788888742  2222255443   3321   1222233233332           22   348899999876 9


Q ss_pred             EEEecCCCCc-----CCCchHHHHHHHHHH
Q 030626          139 QGVQFHPESI-----ITTEGKTIVRNFIKM  163 (174)
Q Consensus       139 ~g~QfHPE~~-----~~~~~~~l~~~f~~~  163 (174)
                      +|+|||||+.     .+++|..||+||++.
T Consensus       197 ~g~~~HpE~~~~~~~~~~~g~~~~~~~~~~  226 (227)
T TIGR01737       197 LGMMPHPERASEKLLGGDDGLKLFESLVEW  226 (227)
T ss_pred             EEEecCchhhcccccCCcccHHHHHHHHhh
Confidence            9999999997     467999999999864

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=99.84  E-value=5.4e-21  Score=151.70  Aligned_cols=168  Identities=18%  Similarity=0.285  Sum_probs=116.7

Q ss_pred             CchHHHHHHhc-CCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCc--ccc---ccc
Q 030626            2 SVNYLVSYCRK-NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG--VMH---GKS   75 (174)
Q Consensus         2 ~~~~~~~~~~~-~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~--~~~---~~~   75 (174)
                      +.+|.++|..+ ..|||+++||.|+..-.+...+.-+++.+++|+||||+|||+.+..|..++......  .++   ...
T Consensus       351 ~~~~~~aW~~l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCLGmQ~AvIEfaRnvLg~~dAnStEF~p~~~~  430 (585)
T KOG2387|consen  351 PRKYHAAWQKLKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICLGMQLAVIEFARNVLGLKDANSTEFDPETKN  430 (585)
T ss_pred             hhHHHHHHHHhccCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeehhhhHHHHHHHHHhhCCCCCCccccCCCCCC
Confidence            45788888776 499999999999999999988888888999999999999999998777655544311  000   000


Q ss_pred             ceeEe-ccC-------------------CCCCcccCCC---Cceeecccccceeccc---CCCCCCcEEEEEcCCCc-eE
Q 030626           76 SLVYY-DEK-------------------GEDGLLAGLS---NPFTAGRYHSLVIEKE---SFPSDALEVTAWTEDGL-IM  128 (174)
Q Consensus        76 ~~~~~-~~~-------------------~~~~l~~~~~---~~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~~-i~  128 (174)
                      ..+.. ++.                   .+++..+.+.   +...-.+.|.|.|+++   .+...|+..++.+.++. .+
T Consensus       431 ~vVi~MPE~~~~~mGgtMRLG~R~t~f~~~~s~~~kLYG~~~~V~ERHRHRyEVNP~~v~~le~~Gl~FvGkd~~g~rme  510 (585)
T KOG2387|consen  431 PVVIFMPEHNKTHMGGTMRLGSRRTVFQDKDSKLRKLYGNVEFVDERHRHRYEVNPEMVKQLEQAGLSFVGKDVTGKRME  510 (585)
T ss_pred             cEEEECcCCCcccccceeeecccceeeecCchHHHHHhCCchhhhhhhhcceecCHHHHHHHHhcCcEEEeecCCCcEEE
Confidence            01110 100                   0111112221   2234456788998875   35668999999998775 88


Q ss_pred             EEeeCCCCceEEEecCCCCcCCCc-hHHHHHHHHHHHHHHHH
Q 030626          129 AARHKKYKHLQGVQFHPESIITTE-GKTIVRNFIKMIVRKEA  169 (174)
Q Consensus       129 a~~~~~~~~~~g~QfHPE~~~~~~-~~~l~~~f~~~~~~~~~  169 (174)
                      .++.+++|+++|+|||||+.+.+. ..++|-..+.+...+..
T Consensus       511 I~El~~HP~fVg~QfHPE~~srp~kpsp~flGlv~as~~~l~  552 (585)
T KOG2387|consen  511 IIELESHPFFVGVQFHPEFKSRPDKPSPLFLGLVAASCGRLD  552 (585)
T ss_pred             EEEcCCCCceeeeccCHHHhcCCCCCCcchhHhHHHHHhhHH
Confidence            999999999999999999988764 45666666665554433

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=99.84  E-value=1.6e-20  Score=159.75  Aligned_cols=150  Identities=24%  Similarity=0.443  Sum_probs=118.4

Q ss_pred             HHHhcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCC
Q 030626            8 SYCRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGED   86 (174)
Q Consensus         8 ~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~   86 (174)
                      .+...+||||++++|||+|.-.......+++ +..++|++|||+|||+|+.+.|++..+++.+. +|...+......   
T Consensus       205 ~i~~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQllA~AaGakT~KmKyGN-RGhNiP~~~~~t---  280 (1435)
T KOG0370|consen  205 PIAKEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQLLALAAGAKTYKMKYGN-RGHNIPCTCRAT---  280 (1435)
T ss_pred             cccccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhHHHHHhhCCceEEeeccc-cCCCccceeccC---
Confidence            3455689999999999999888777666666 44469999999999999999999999998652 455444433211   


Q ss_pred             CcccCCCCceeecccccceecccCCCCCCcEEEEEc-CCCceEEEeeCCCCceEEEecCCCCcCCC-chHHHHHHHHHHH
Q 030626           87 GLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMI  164 (174)
Q Consensus        87 ~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~a~~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~~  164 (174)
                            ..-+...++|+|.++.+.|+ .+++.+-.+ +|+.-+++.+...| ++.+|||||...++ +..-+|..|++.+
T Consensus       281 ------Grc~ITSQNHGYAVD~~tLp-~gWk~lFvN~NDgSNEGI~Hss~P-~fSvQFHPEat~GP~DTeyLFDiFi~lv  352 (1435)
T KOG0370|consen  281 ------GRCFITSQNHGYAVDPATLP-AGWKPLFVNANDGSNEGIMHSSKP-FFSVQFHPEATPGPHDTEYLFDVFIELV  352 (1435)
T ss_pred             ------ceEEEEecCCceeecccccc-CCCchheeecccCCCceEecCCCC-ceeeecCCcCCCCCcchHHHHHHHHHHH
Confidence                  13366789999999987766 788877766 67889999999877 99999999998776 5678999999987


Q ss_pred             HHHHH
Q 030626          165 VRKEA  169 (174)
Q Consensus       165 ~~~~~  169 (174)
                      .+...
T Consensus       353 kk~ks  357 (1435)
T KOG0370|consen  353 KKSKS  357 (1435)
T ss_pred             HHHhc
Confidence            76543

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.82  E-value=1.6e-19  Score=135.76  Aligned_cols=148  Identities=18%  Similarity=0.299  Sum_probs=98.5

Q ss_pred             CCCEEEeCCCCCCCCC--------cchhHHHHHH-cCCCCcEEeehHhHHHHHHH--hCCeeccCCCcccccccceeEec
Q 030626           13 NPRGVLISPGPGAPQD--------SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMHGKSSLVYYD   81 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~--------~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~--~gg~v~~~~~~~~~~~~~~~~~~   81 (174)
                      ++|+|||+||+.....        ...+.+.+++ ..+++|++|||.|+|+|+.+  ++|++.++........|..+.+.
T Consensus        41 ~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~~~~~~~~v~v~i~  120 (219)
T PRK03619         41 GVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALTRNASLKFICRDVHLRVE  120 (219)
T ss_pred             CCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEEEcCCCcEEEEEEEEEEC
Confidence            6899999999753211        1223344544 56789999999999999997  99999888754332334344433


Q ss_pred             cCCCCCcccCCCC--ceeeccccc---ceeccc---CCCCCCcEEEEEc---CCC---ceEEEeeCCCCceEEEecCCCC
Q 030626           82 EKGEDGLLAGLSN--PFTAGRYHS---LVIEKE---SFPSDALEVTAWT---EDG---LIMAARHKKYKHLQGVQFHPES  147 (174)
Q Consensus        82 ~~~~~~l~~~~~~--~~~~~~~H~---~~v~~~---~l~~~~~~~~a~s---~~~---~i~a~~~~~~~~~~g~QfHPE~  147 (174)
                       ..++++++.+..  .+.+...|+   |.++.+   .+...++.++.++   +++   .|+++..++ ++++|+|||||+
T Consensus       121 -~~~~~~~~~~~~g~~~~~~~aH~~~r~~~~~~~~~~l~~~~~~~~~~~~~npngs~~~ia~i~~~~-~~~~g~~~HPE~  198 (219)
T PRK03619        121 -NNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRLEGNGQVVFRYCDENPNGSVNDIAGIVNEK-GNVLGMMPHPER  198 (219)
T ss_pred             -CCCChhhcCCCCCCEEEEEEEcCcccEEECHHHHHHHHhCCcEEEEEcCCCCCCCHHHhcccCCCC-CCEEEEeCCCCc
Confidence             346788887742  233434554   334321   2445677766665   555   367776654 469999999999


Q ss_pred             cCC-----CchHHHHHHHHH
Q 030626          148 IIT-----TEGKTIVRNFIK  162 (174)
Q Consensus       148 ~~~-----~~~~~l~~~f~~  162 (174)
                      .+.     .++.+||++|++
T Consensus       199 ~~~~~~~~~~g~~lf~~~v~  218 (219)
T PRK03619        199 AVEPLLGSTDGLKLFESLLK  218 (219)
T ss_pred             cccCccCCCcCHHHHHHHhh
Confidence            865     489999999985

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=99.76  E-value=4.6e-18  Score=129.00  Aligned_cols=53  Identities=19%  Similarity=0.311  Sum_probs=36.8

Q ss_pred             HHHHHHhcCCCEEEeCCCCCCCCCc----chhHHHHHH-cCCCCcEEeehHhHHHHHHHh
Q 030626            5 YLVSYCRKNPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAF   59 (174)
Q Consensus         5 ~~~~~~~~~~dgiii~GG~~~~~~~----~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~   59 (174)
                      ..+++.  ++|+|||+||.......    ..+.+.|++ ...++|+||||.|||+|+...
T Consensus        32 ~~~~L~--~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~~   89 (248)
T PLN02832         32 KPEQLE--GVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGLIFLAERA   89 (248)
T ss_pred             CHHHhc--cCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHHh
Confidence            345553  68999999976543211    123344554 457899999999999999875

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=99.69  E-value=2.5e-16  Score=113.92  Aligned_cols=137  Identities=12%  Similarity=0.203  Sum_probs=90.2

Q ss_pred             hHHHHHHhcCCCEEEeCCCCCCC----CCcchhHHHHHHcCCCCcEEeehHhHHHHHHH---hC---CeeccCCCccccc
Q 030626            4 NYLVSYCRKNPRGVLISPGPGAP----QDSGISLQTVLELGPTVPLFGVCMGLQCIGEA---FG---GKIVRSPLGVMHG   73 (174)
Q Consensus         4 ~~~~~~~~~~~dgiii~GG~~~~----~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~---~g---g~v~~~~~~~~~~   73 (174)
                      +..+++.  ++|+||||||.+..    .....+.+.+++...++|++|||.|+|+|+..   +|   ++|.++.++....
T Consensus        32 ~~~~~l~--~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~~kpilGICaG~qlL~~~s~~Lg~idg~V~Rn~~Grq~~  109 (179)
T PRK13526         32 KFNNDFD--SIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCSSKPVFGTCAGSIILSKGEGYLNLLDLEVQRNAYGRQVD  109 (179)
T ss_pred             CCHHHHh--CCCEEEECCChHHHHHHHhhhcCcHHHHHHHHcCCcEEEEcHHHHHHHccCCCCCCccEEEEEcCCCCccc
Confidence            3455553  68999999986643    11223456666533468999999999999983   33   6777776554332


Q ss_pred             ccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCch
Q 030626           74 KSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEG  153 (174)
Q Consensus        74 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~  153 (174)
                      .+.....        +.++  .+...+...-.+.+   ..++.+++|+-++ .+-+++..   +++++-||||.+   +.
T Consensus       110 sf~~~~~--------~~~~--~~~~vFiRAP~i~~---~~~~v~vla~~~~-~~v~v~q~---~~l~~~FHPElt---~d  169 (179)
T PRK13526        110 SFVADIS--------FNDK--NITGVFIRAPKFIV---VGNQVDILSKYQN-SPVLLRQA---NILVSSFHPELT---QD  169 (179)
T ss_pred             eeeeecC--------cCCc--eEEEEEEcCceEeE---cCCCcEEEEEECC-EEEEEEEC---CEEEEEeCCccC---CC
Confidence            2211110        1111  36666666777766   5689999998864 55666655   499999999985   55


Q ss_pred             HHHHHHHHH
Q 030626          154 KTIVRNFIK  162 (174)
Q Consensus       154 ~~l~~~f~~  162 (174)
                      .++.+.|++
T Consensus       170 ~r~h~~f~~  178 (179)
T PRK13526        170 PTVHEYFLA  178 (179)
T ss_pred             chHHHHHhc
Confidence            688888875

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.67  E-value=4.7e-16  Score=114.75  Aligned_cols=150  Identities=19%  Similarity=0.295  Sum_probs=98.8

Q ss_pred             CCCEEEeCCCCCCC--CCcc------hhHHHHHH-cCCCCcEEeehHhHHHHHHH--hCCeeccCCCcccccccceeEec
Q 030626           13 NPRGVLISPGPGAP--QDSG------ISLQTVLE-LGPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMHGKSSLVYYD   81 (174)
Q Consensus        13 ~~dgiii~GG~~~~--~~~~------~~~~~i~~-~~~~~PilGIC~G~Qll~~~--~gg~v~~~~~~~~~~~~~~~~~~   81 (174)
                      ++|+||++||...-  -..+      ..++.+++ ..+++|+||||.|+|+|.++  +.|.+.++........+..+.+.
T Consensus        43 ~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPGal~~N~s~~F~cr~v~l~V~  122 (231)
T COG0047          43 DFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILSEAGLLPGALTRNESLRFECRWVYLRVE  122 (231)
T ss_pred             CccEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCcceecCCCCceEEEEEEEEEe
Confidence            69999999996532  2222      23455554 56899999999999999964  67888888755444444444433


Q ss_pred             cCCCCCcccCCC--Cceeecccccce---eccc---CCCCCCcEEEEEcC-----------CCc---eEEEeeCCCCceE
Q 030626           82 EKGEDGLLAGLS--NPFTAGRYHSLV---IEKE---SFPSDALEVTAWTE-----------DGL---IMAARHKKYKHLQ  139 (174)
Q Consensus        82 ~~~~~~l~~~~~--~~~~~~~~H~~~---v~~~---~l~~~~~~~~a~s~-----------~~~---i~a~~~~~~~~~~  139 (174)
                       ..++++++.+.  +.+.+.-.|+.+   ++.+   .+..++..++-+.+           ++.   |+++...+++ ++
T Consensus       123 -~~~t~ft~~~~~g~~i~ipVAHgEGr~~~~~~~l~~l~~ngqvvfrY~d~~G~~~~~~NPNGS~~~IaGI~n~~G~-V~  200 (231)
T COG0047         123 -NNNTPFTSGYEGGEVIPIPVAHGEGRYYADDETLAELEENGQVVFRYVDNNGETEEYANPNGSVNGIAGITNEDGN-VL  200 (231)
T ss_pred             -cCCCHHHHhcCCCceEEEEEeecceeEEccHHHHHHHhhCCeEEEEEecCCCceeeeeCCCCChhhceeEEcCCCC-EE
Confidence             34566666664  346666677643   2221   12233334443332           333   8999988875 99


Q ss_pred             EEecCCCCcC-----CCchHHHHHHHHHHH
Q 030626          140 GVQFHPESII-----TTEGKTIVRNFIKMI  164 (174)
Q Consensus       140 g~QfHPE~~~-----~~~~~~l~~~f~~~~  164 (174)
                      |++.||||..     +.++.+||++.++.+
T Consensus       201 gmMPHPERa~~~~~g~~Dg~~lF~s~~~~~  230 (231)
T COG0047         201 GMMPHPERASESLLGGEDGLRLFRSARKYL  230 (231)
T ss_pred             EecCCchhhhhcccCCchHHHHHHHHHHhh
Confidence            9999999964     357899999888764

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.65  E-value=1.8e-15  Score=116.26  Aligned_cols=151  Identities=19%  Similarity=0.279  Sum_probs=93.5

Q ss_pred             CCCEEEeCCCCCCCC--Ccch---------hHHHHHH-cCCCCcEEeehHhHHHHHHH--hCC----------eeccCCC
Q 030626           13 NPRGVLISPGPGAPQ--DSGI---------SLQTVLE-LGPTVPLFGVCMGLQCIGEA--FGG----------KIVRSPL   68 (174)
Q Consensus        13 ~~dgiii~GG~~~~~--~~~~---------~~~~i~~-~~~~~PilGIC~G~Qll~~~--~gg----------~v~~~~~   68 (174)
                      ++|+|||+||.+...  ..+.         ..+.+++ ..+++|+||||.|+|+|+.+  +.|          .+.++..
T Consensus        48 ~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg~~~~~~~~~~~L~~N~s  127 (261)
T PRK01175         48 DYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPGFDEIAEKPEMALTVNES  127 (261)
T ss_pred             hCCEEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCCCCccccCCcceEeecCC
Confidence            589999999954221  2211         1133444 67889999999999999974  334          4555554


Q ss_pred             cccccccceeEeccCCCCCcccCCCC-ceeecccccce--e--ccc---CCCCCCcEEEEEc------------CCC---
Q 030626           69 GVMHGKSSLVYYDEKGEDGLLAGLSN-PFTAGRYHSLV--I--EKE---SFPSDALEVTAWT------------EDG---  125 (174)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~H~~~--v--~~~---~l~~~~~~~~a~s------------~~~---  125 (174)
                      ......|..+.+. ..+++++.++.. .+.+...|.++  +  +.+   .|...+..++-+.            +++   
T Consensus       128 ~~f~~~~~~~~v~-~~~s~~~~~~~~~~~~~piah~eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~NPNGs~~  206 (261)
T PRK01175        128 NRFECRPTYLKKE-NRKCIFTKLLKKDVFQVPVAHAEGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWNPNGSIY  206 (261)
T ss_pred             CCeEEeeeEEEEC-CCCChhHhccCCCEEEEeeEcCCcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCCCCCChh
Confidence            4433444444443 246677766653 34445566543  1  111   2333444444442            223   


Q ss_pred             ceEEEeeCCCCceEEEecCCCCcCC-------------CchHHHHHHHHHHHH
Q 030626          126 LIMAARHKKYKHLQGVQFHPESIIT-------------TEGKTIVRNFIKMIV  165 (174)
Q Consensus       126 ~i~a~~~~~~~~~~g~QfHPE~~~~-------------~~~~~l~~~f~~~~~  165 (174)
                      .|+++.+.+++ ++|++.||||...             .+|..||+++++.+.
T Consensus       207 ~IAGi~~~~G~-vlglMpHPEr~~~~~~~~~~~~~~~~~~g~~~f~~~~~~~~  258 (261)
T PRK01175        207 NIAGITNEKGN-VIGLMPHPERAFYGYQHPYWEKEEDYGDGKIFFDSLINYLR  258 (261)
T ss_pred             hcceeECCCCC-EEEEcCCHHHhhchhhccccccccCCCchHHHHHHHHHHHH
Confidence            39999999875 9999999998532             278999999987553

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.63  E-value=3.1e-15  Score=113.96  Aligned_cols=145  Identities=17%  Similarity=0.233  Sum_probs=90.3

Q ss_pred             CCCEEEeCCCCCCCCCc--------ch-hHHHHHH-cCCCCcEEeehHhHHHHHHH--hCCeeccCCCcccccc----cc
Q 030626           13 NPRGVLISPGPGAPQDS--------GI-SLQTVLE-LGPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMHGK----SS   76 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~--------~~-~~~~i~~-~~~~~PilGIC~G~Qll~~~--~gg~v~~~~~~~~~~~----~~   76 (174)
                      ++|+|||+||+......        .. ..+.+++ ..+++|+||||.|+|+|+.+  +++++...+.......    +.
T Consensus        43 ~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~~~~~~~~~~~~~~~v  122 (238)
T cd01740          43 DYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNGFQILVELGLLPGALIRNKGLKFICRWQNRFV  122 (238)
T ss_pred             hCCEEEECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcHHHHHHHcCCCccccccCCCCceeccccCceE
Confidence            68999999997532211        11 3344544 56789999999999999997  8888877664332221    12


Q ss_pred             eeEeccCCCCCcccC--CCCceeecccccce---eccc---CCCCCCcEEEEE-------------cCCC---ceEEEee
Q 030626           77 LVYYDEKGEDGLLAG--LSNPFTAGRYHSLV---IEKE---SFPSDALEVTAW-------------TEDG---LIMAARH  132 (174)
Q Consensus        77 ~~~~~~~~~~~l~~~--~~~~~~~~~~H~~~---v~~~---~l~~~~~~~~a~-------------s~~~---~i~a~~~  132 (174)
                      .+.+ ...++.++..  ....+.++..|+++   .+.+   .+...+-.+ -+             ++++   .|+++.+
T Consensus       123 ~~~v-~~~~si~t~~~~~g~~l~~~vaHgeG~~~~~~~~~~~l~~~~~i~-~y~~~~~~~~~~yp~NPnGs~~~iAgi~~  200 (238)
T cd01740         123 TLRV-ENNDSPFTKGYMEGEVLRIPVAHGEGRFYADDETLAELEENGQIA-QYVDDDGNVTERYPANPNGSLDGIAGICN  200 (238)
T ss_pred             EEEE-cCCCCceecCCCCCCEEEEEeECCceeeEcCHHHHHHHHHCCCEE-EEEcCCCCccccCCCCCCCChhcceEEEc
Confidence            2322 2345667766  33567788888753   1111   111122222 11             2233   3999999


Q ss_pred             CCCCceEEEecCCCCcCCC----------chHHHHHHH
Q 030626          133 KKYKHLQGVQFHPESIITT----------EGKTIVRNF  160 (174)
Q Consensus       133 ~~~~~~~g~QfHPE~~~~~----------~~~~l~~~f  160 (174)
                      .+++ ++|++.||||...+          ++..+|++.
T Consensus       201 ~~Gr-vlglMphPer~~~~~q~~~~~~~~~~~~~F~~~  237 (238)
T cd01740         201 EDGR-VLGMMPHPERAVEPWQWERLLGGSDGLKLFRNA  237 (238)
T ss_pred             CCCC-EEEEcCChHHcccccccccccCCCccHHHHhhc
Confidence            9875 99999999996544          566777763

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]

Probab=99.62  E-value=6.5e-16  Score=114.70  Aligned_cols=134  Identities=19%  Similarity=0.336  Sum_probs=88.6

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHHHH-------HcCCCCcEEeehHhHHHHHHHhC-Cee--ccCCCcccccccceeEec-
Q 030626           13 NPRGVLISPGPGAPQDSGISLQTVL-------ELGPTVPLFGVCMGLQCIGEAFG-GKI--VRSPLGVMHGKSSLVYYD-   81 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~i~-------~~~~~~PilGIC~G~Qll~~~~g-g~v--~~~~~~~~~~~~~~~~~~-   81 (174)
                      -.+|||++||-....++-+..+.+.       +.+..+||+|||+|+.+|..... ++.  ++.. .  ........+. 
T Consensus       111 lvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGFE~lsmiISqnrdile~~d-~--vd~AssLqF~~  187 (340)
T KOG1559|consen  111 LVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFELLSMIISQNRDILERFD-A--VDVASSLQFVG  187 (340)
T ss_pred             HhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHhcChhHHHhhc-c--cccccceeeec
Confidence            3689999999666666665554443       13689999999999999998765 211  1111 0  1111112221 


Q ss_pred             -cCCCCCcccCCCC--------ceeecccccceecccCCC-----CCCcEEEEEcCCC----ceEEEeeCCCCceEEEec
Q 030626           82 -EKGEDGLLAGLSN--------PFTAGRYHSLVIEKESFP-----SDALEVTAWTEDG----LIMAARHKKYKHLQGVQF  143 (174)
Q Consensus        82 -~~~~~~l~~~~~~--------~~~~~~~H~~~v~~~~l~-----~~~~~~~a~s~~~----~i~a~~~~~~~~~~g~Qf  143 (174)
                       ......+|+.+|.        ...+.+.|.++++++.+.     ...|.++.++.|+    .|..++.+.|| ++|+||
T Consensus       188 nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~Ls~FFnilTT~~D~~~k~fvSTv~~~kYP-vtgfQW  266 (340)
T KOG1559|consen  188 NVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNPALSSFFNILTTCTDGNSKTFVSTVESKKYP-VTGFQW  266 (340)
T ss_pred             ccceeehhHhhCCHHHHHHhccchheeeccccccchhhccCCHHHHHHHhheeeecCCCceEEEEeecceecc-ceeeee
Confidence             1224556666653        345788999999876542     2457788877655    28889999998 999999


Q ss_pred             CCCCcCC
Q 030626          144 HPESIIT  150 (174)
Q Consensus       144 HPE~~~~  150 (174)
                      |||+...
T Consensus       267 HPEKnaf  273 (340)
T KOG1559|consen  267 HPEKNAF  273 (340)
T ss_pred             cCccCcc
Confidence            9998643

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=99.54  E-value=5.3e-15  Score=106.70  Aligned_cols=147  Identities=24%  Similarity=0.381  Sum_probs=85.1

Q ss_pred             CchHHHHHHhcCCCEEEeCCCCCCCC----CcchhHHHHHH-cCCC-CcEEeehHhHHHHHHHhCC-----------eec
Q 030626            2 SVNYLVSYCRKNPRGVLISPGPGAPQ----DSGISLQTVLE-LGPT-VPLFGVCMGLQCIGEAFGG-----------KIV   64 (174)
Q Consensus         2 ~~~~~~~~~~~~~dgiii~GG~~~~~----~~~~~~~~i~~-~~~~-~PilGIC~G~Qll~~~~gg-----------~v~   64 (174)
                      .++..++|.  ++||||||||....-    ....+.+.+++ ...+ +|+||+|.|+-+|+....+           +|.
T Consensus        24 ~Vr~~~dL~--~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~v~~~~q~~Lg~ldi~V~  101 (188)
T PF01174_consen   24 EVRTPEDLE--GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKEVEGQGQPLLGLLDITVR  101 (188)
T ss_dssp             EE-SGGGGT--T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEEECSSCCTSS--EEEEEE
T ss_pred             EeCCHHHHc--cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhhhhhcccccccceeEEEE
Confidence            456677775  579999999965431    11123455554 4444 9999999999999874332           344


Q ss_pred             cCCCcccccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecC
Q 030626           65 RSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFH  144 (174)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfH  144 (174)
                      |+.++...........        +.++..++...+...-.|.+-. .+++.++++..++ .|-+++..   +++++-||
T Consensus       102 RNafGrQ~~SFe~~l~--------i~~~~~~~~avFIRAP~I~~v~-~~~~v~vla~~~g-~iVav~qg---n~latsFH  168 (188)
T PF01174_consen  102 RNAFGRQLDSFEADLD--------IPGLGEPFPAVFIRAPVIEEVG-SPEGVEVLAELDG-KIVAVRQG---NILATSFH  168 (188)
T ss_dssp             TTTTCSSSCEEEEEEE--------ETTTESEEEEEESS--EEEEE---TTTEEEEEEETT-EEEEEEET---TEEEESS-
T ss_pred             ccccccchhcEEEEEE--------eecCCCcEEEEEcCCcEEEEee-ccccccccccccc-ceEEEEec---CEEEEEeC
Confidence            4443322221111100        1222246677777777766511 1267888887765 55566644   59999999


Q ss_pred             CCCcCCCchHHHHHHHHHHHH
Q 030626          145 PESIITTEGKTIVRNFIKMIV  165 (174)
Q Consensus       145 PE~~~~~~~~~l~~~f~~~~~  165 (174)
                      ||.  +.|+.++.++|++++.
T Consensus       169 PEL--T~D~~r~H~yFl~~v~  187 (188)
T PF01174_consen  169 PEL--TDDDTRIHEYFLEMVV  187 (188)
T ss_dssp             GGG--SSTHCHHHHHHHHHHC
T ss_pred             Ccc--cCchhHHHHHHHHHhh
Confidence            996  5555899999999874

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=99.53  E-value=1.4e-13  Score=98.45  Aligned_cols=145  Identities=23%  Similarity=0.348  Sum_probs=87.6

Q ss_pred             CchHHHHHHhcCCCEEEeCCCCCCCC----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCC------------eec
Q 030626            2 SVNYLVSYCRKNPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGG------------KIV   64 (174)
Q Consensus         2 ~~~~~~~~~~~~~dgiii~GG~~~~~----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg------------~v~   64 (174)
                      .++.++++.  ..||||||||....-    ....+.+.+++ ..+++|+||.|.|+-+|+...-+            +|.
T Consensus        29 ~Vk~~~dL~--~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLakei~~~~~~~~Lg~mdi~V~  106 (194)
T COG0311          29 EVKRPEDLE--GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKEILDGPEQPLLGLLDVTVR  106 (194)
T ss_pred             EEcCHHHhc--cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhhhhcCCCCCcccceEEEEEE
Confidence            467788886  579999999976531    11123344444 67799999999999999965442            111


Q ss_pred             cCCCcccccccceeEeccCCCCCcccCCCC--ceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEe
Q 030626           65 RSPLGVMHGKSSLVYYDEKGEDGLLAGLSN--PFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ  142 (174)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~Q  142 (174)
                      ++.++.........        --++++..  .+.+.+...-.+.+   ..++.+++|+-++ .|-+++..   +++++-
T Consensus       107 RNAfGRQ~dSFe~~--------~di~~~~~~~~~~avFIRAP~I~~---vg~~V~vLa~l~~-~iVav~qg---n~Lats  171 (194)
T COG0311         107 RNAFGRQVDSFETE--------LDIEGFGLPFPFPAVFIRAPVIEE---VGDGVEVLATLDG-RIVAVKQG---NILATS  171 (194)
T ss_pred             ccccccccccceee--------EEeecccCCCcceEEEEEcceeeh---hcCcceEeeeeCC-EEEEEEeC---CEEEEe
Confidence            11111111110000        00111112  24445666666665   3457899998766 45555544   499999


Q ss_pred             cCCCCcCCCchHHHHHHHHHHHHH
Q 030626          143 FHPESIITTEGKTIVRNFIKMIVR  166 (174)
Q Consensus       143 fHPE~~~~~~~~~l~~~f~~~~~~  166 (174)
                      ||||.+   +..++-+.|++.+.+
T Consensus       172 FHPELT---~D~r~Heyf~~~v~~  192 (194)
T COG0311         172 FHPELT---DDTRLHEYFLDMVLG  192 (194)
T ss_pred             cCcccc---CCccHHHHHHHHhhc
Confidence            999975   445888888887654

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=99.53  E-value=2.3e-14  Score=111.31  Aligned_cols=149  Identities=21%  Similarity=0.290  Sum_probs=92.7

Q ss_pred             hHHHHHHhcCCCEEEeCCCCCCCCCcc------hhHHHHHH-cCCCCcEEeehHhHHHHHHH------------hCCeec
Q 030626            4 NYLVSYCRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVPLFGVCMGLQCIGEA------------FGGKIV   64 (174)
Q Consensus         4 ~~~~~~~~~~~dgiii~GG~~~~~~~~------~~~~~i~~-~~~~~PilGIC~G~Qll~~~------------~gg~v~   64 (174)
                      +.+-++.  +.|-+|++ |.|+.....      -+.+.+++ +..++|++|||.|.|+|...            +.|.+.
T Consensus        32 ~~P~DI~--~a~rLIfP-GVGnfg~~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF~gSvE~p~skGLgvipg~v~  108 (541)
T KOG0623|consen   32 QTPGDIL--NADRLIFP-GVGNFGPAMDVLNRTGFAEPLRKYIESGKPFMGICVGLQALFDGSVENPPSKGLGVIPGIVG  108 (541)
T ss_pred             cCchhhc--cCceEeec-CcccchHHHHHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHhcccccCCCcCccccccccee
Confidence            3444543  56777765 455543222      23455666 67899999999999999641            234444


Q ss_pred             cCCCc---ccccccceeEeccCCCCCcccCCCCceeecccccceeccc--CCCCCCcEEEEEcCCC---ceEEEeeCCCC
Q 030626           65 RSPLG---VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKE--SFPSDALEVTAWTEDG---LIMAARHKKYK  136 (174)
Q Consensus        65 ~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~--~l~~~~~~~~a~s~~~---~i~a~~~~~~~  136 (174)
                      +....   ..|..|+.-.+   .+++.|-++.....+++.|+|.....  .+.+.+|++ |+...+   -|.++...   
T Consensus       109 RFD~s~k~VPhIGWNsc~v---~sd~effg~~p~~~~YFVHSyl~~ek~~~len~~wki-at~kYG~E~Fi~ai~kn---  181 (541)
T KOG0623|consen  109 RFDASAKIVPHIGWNSCQV---GSDSEFFGDVPNRHVYFVHSYLNREKPKSLENKDWKI-ATCKYGSESFISAIRKN---  181 (541)
T ss_pred             cccCCCCcCCccccccccc---CCcccccccCCCceEEEEeeecccccccCCCCCCceE-eeeccCcHHHHHHHhcC---
Confidence            44321   23445543322   23344444444556888999965432  456667875 444443   25555432   


Q ss_pred             ceEEEecCCCCcCCCchHHHHHHHHHH
Q 030626          137 HLQGVQFHPESIITTEGKTIVRNFIKM  163 (174)
Q Consensus       137 ~~~g~QfHPE~~~~~~~~~l~~~f~~~  163 (174)
                      +++++|||||+ +++.|...+++|+..
T Consensus       182 N~~AtQFHPEK-SG~aGL~vl~~FL~~  207 (541)
T KOG0623|consen  182 NVHATQFHPEK-SGEAGLSVLRRFLHQ  207 (541)
T ss_pred             ceeeEeccccc-ccchhHHHHHHHHhc
Confidence            69999999999 788999999999983

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=99.39  E-value=2e-12  Score=99.20  Aligned_cols=151  Identities=17%  Similarity=0.238  Sum_probs=86.1

Q ss_pred             cCCCEEEeCCCCCCCCCc--ch-----------hHHHHHH-cCC-CCcEEeehHhHHHHHHH--hCC----------eec
Q 030626           12 KNPRGVLISPGPGAPQDS--GI-----------SLQTVLE-LGP-TVPLFGVCMGLQCIGEA--FGG----------KIV   64 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~~~--~~-----------~~~~i~~-~~~-~~PilGIC~G~Qll~~~--~gg----------~v~   64 (174)
                      .++|+|+|+||.+.-+..  +.           +.+.+.+ +.+ +.++||||.|+|+|.+.  +.+          .+.
T Consensus        45 ~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~~~~~~~~~~~L~  124 (259)
T PF13507_consen   45 DDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPGGEIKDSEQSPALT  124 (259)
T ss_dssp             CC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT------TT--EEE
T ss_pred             hhCcEEEECCccCccccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCCccccccCCCcEEc
Confidence            469999999997644322  22           2344444 444 89999999999999875  666          666


Q ss_pred             cCCCcccccccceeEeccCCCCCcccCCCCceeecccccce---e-cc---cCCCCCCcEEEEEcCC-------------
Q 030626           65 RSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLV---I-EK---ESFPSDALEVTAWTED-------------  124 (174)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~---v-~~---~~l~~~~~~~~a~s~~-------------  124 (174)
                      ++........|..+......++-.++++ +.+.+...|++.   + ++   +.+...+..++.+.++             
T Consensus       125 ~N~s~~fe~rwv~~~v~~~s~~~~~~~~-~~~~lPiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~NPN  203 (259)
T PF13507_consen  125 PNASGRFESRWVNLVVNENSPSIFLRGL-EGIVLPIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPRNPN  203 (259)
T ss_dssp             --TTSS-EEEEEEEEE--SSTTCCCTTT-TCEEEEEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTTSSS
T ss_pred             CCCCCCeEEEEEEEEEecCCcceecCCC-CEEEEEEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCCCCC
Confidence            6665554455555544333344445555 345555566532   2 11   1233445555555432             


Q ss_pred             ---CceEEEeeCCCCceEEEecCCCCcCC--------------CchHHHHHHHHHHH
Q 030626          125 ---GLIMAARHKKYKHLQGVQFHPESIIT--------------TEGKTIVRNFIKMI  164 (174)
Q Consensus       125 ---~~i~a~~~~~~~~~~g~QfHPE~~~~--------------~~~~~l~~~f~~~~  164 (174)
                         ..|+++.+.++. ++|++.|||+...              ..+.++|++-++++
T Consensus       204 GS~~~IAGics~~Gr-vlglMpHPEr~~~~~~~~~~p~~~~~~s~~~~~F~n~~~w~  259 (259)
T PF13507_consen  204 GSVNNIAGICSPDGR-VLGLMPHPERAFEPWQWPHWPREKWQESPWLRIFQNAVEWF  259 (259)
T ss_dssp             --GGGEEEEE-TTSS-EEEESSBCCGTTCCCCSS-S--TT--B-TTHHHHHHHHH--
T ss_pred             CCccceeEEEcCCCC-EEEEcCChHHhCchhhcCCCCccccCCChHHHHHHHHhhcC
Confidence               349999999875 9999999998532              23668888877653

>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS)

Probab=99.32  E-value=3e-12  Score=92.69  Aligned_cols=111  Identities=15%  Similarity=0.154  Sum_probs=77.4

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcch---h--HHHHHH--cCCCCcEEeehHhHHHHHHHhCCee-ccCCCcccccccce
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGI---S--LQTVLE--LGPTVPLFGVCMGLQCIGEAFGGKI-VRSPLGVMHGKSSL   77 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~---~--~~~i~~--~~~~~PilGIC~G~Qll~~~~gg~v-~~~~~~~~~~~~~~   77 (174)
                      .+++...++||+||+|.|-...+..+   |  +..+.+  ..+.+|+||||+|+|....+++|.. ..++.+ ..|....
T Consensus        55 ~~~i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~~K-~~Gvf~~  133 (175)
T cd03131          55 FDDIRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEK-IFGVFPH  133 (175)
T ss_pred             HHHccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCCCc-eEEEEEe
Confidence            45677778999999999986554332   1  222322  3577999999999999999999986 445432 3444432


Q ss_pred             eEeccCCCCCcccCCCCceeecccccceecccCC-CCCCcEEEE
Q 030626           78 VYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVTA  120 (174)
Q Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a  120 (174)
                      ...   .+++|++++++.+.+.++|...|+.+.+ ..+++++++
T Consensus       134 ~~~---~~hpL~~g~~d~F~~PhSR~~~v~~~~~~~~~~l~il~  174 (175)
T cd03131         134 TIL---EPHPLLRGLDDGFDVPHSRYAEVDREDIEEAAGLTILA  174 (175)
T ss_pred             eec---CCCccccCCCCceeecCcccccCCHHHHhhCCCCEEcc
Confidence            221   2789999999999999999888875433 235566654

Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti

>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi

Probab=99.28  E-value=1.4e-11  Score=95.46  Aligned_cols=154  Identities=16%  Similarity=0.210  Sum_probs=93.3

Q ss_pred             HHHHHHhcCCCEEEeCCCCCCCCCcch--hH---HHHHH--cCCCCcEEeehHhHHH-HHHHhCCeeccCCCcccccccc
Q 030626            5 YLVSYCRKNPRGVLISPGPGAPQDSGI--SL---QTVLE--LGPTVPLFGVCMGLQC-IGEAFGGKIVRSPLGVMHGKSS   76 (174)
Q Consensus         5 ~~~~~~~~~~dgiii~GG~~~~~~~~~--~~---~~i~~--~~~~~PilGIC~G~Ql-l~~~~gg~v~~~~~~~~~~~~~   76 (174)
                      .++++.+.++||+||+|-|-..-+-.+  +.   ..|.+  ..+..+.|.||+|.|. |....|..-...+. ...|...
T Consensus        90 ~~~~i~~~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~-KlfGVf~  168 (298)
T PF04204_consen   90 TFDEIKDRKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPE-KLFGVFE  168 (298)
T ss_dssp             -HHHCTTS-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEE-EEEEEEE
T ss_pred             CHHHHhhCCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCC-cceecee
Confidence            356777778999999999886543322  22   33333  3467999999999999 66777776666552 2245543


Q ss_pred             eeEeccCCCCCcccCCCCceeecccccceecccCC-CCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHH
Q 030626           77 LVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKT  155 (174)
Q Consensus        77 ~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~  155 (174)
                      ...  ....++|++++++.+.+.++..-.+..+.+ ..++++++|.|++.-+..+..+++. .+=+|.|||+    +...
T Consensus       169 ~~~--~~~~~pLl~Gfdd~f~~PhSR~t~i~~~~i~~~~~L~vLa~s~~~G~~l~~~~d~r-~vfi~GH~EY----d~~T  241 (298)
T PF04204_consen  169 HRV--LDPDHPLLRGFDDTFFAPHSRYTEIDRDDIKKAPGLEVLAESEEAGVFLVASKDGR-QVFITGHPEY----DADT  241 (298)
T ss_dssp             EEE--S-SS-GGGTT--SEEEEEEEEEEE--HHHHCT-TTEEEEEEETTTEEEEEEECCCT-EEEE-S-TT------TTH
T ss_pred             eec--cCCCChhhcCCCccccCCcccccCCCHHHHhcCCCcEEEeccCCcceEEEEcCCCC-EEEEeCCCcc----ChhH
Confidence            321  225789999999988888776666665444 4678999999988777777777765 7889999999    4556


Q ss_pred             HHHHHHHHHHH
Q 030626          156 IVRNFIKMIVR  166 (174)
Q Consensus       156 l~~~f~~~~~~  166 (174)
                      |-+.+.+.+.+
T Consensus       242 L~~EY~RD~~~  252 (298)
T PF04204_consen  242 LAKEYRRDLAK  252 (298)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            66666665554

Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=99.22  E-value=1.4e-10  Score=104.42  Aligned_cols=149  Identities=14%  Similarity=0.175  Sum_probs=90.8

Q ss_pred             CCCEEEeCCCCCCCCCc---chh----------HHHHHH-cCCCCcEEeehHhHHHHHHH--hC-C----------eecc
Q 030626           13 NPRGVLISPGPGAPQDS---GIS----------LQTVLE-LGPTVPLFGVCMGLQCIGEA--FG-G----------KIVR   65 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~---~~~----------~~~i~~-~~~~~PilGIC~G~Qll~~~--~g-g----------~v~~   65 (174)
                      ++++|+++||...-...   +.+          .+.+.+ ..++.++||||.|||+|+..  +. +          ++.+
T Consensus      1031 ~~~~l~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~~~~~~~~~~p~l~~ 1110 (1239)
T TIGR01857      1031 KSQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYGNIEAANETSPTLTY 1110 (1239)
T ss_pred             cCcEEEEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCccccccccCCceeee
Confidence            68999999997654332   222          233333 46899999999999999875  21 2          3333


Q ss_pred             CCCcccccccceeEeccCCCCCcccCCC--Cceeecccccce---eccc---CCCCCCcEEEEE-------------cCC
Q 030626           66 SPLGVMHGKSSLVYYDEKGEDGLLAGLS--NPFTAGRYHSLV---IEKE---SFPSDALEVTAW-------------TED  124 (174)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~H~~~---v~~~---~l~~~~~~~~a~-------------s~~  124 (174)
                      +........|..+.+. ..+++++.++.  ..+.+...|+.+   .+.+   .+..++...+-+             +++
T Consensus      1111 N~s~rf~~r~v~~~v~-~~~s~~~~~~~~g~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~~g~~t~~~p~NPN 1189 (1239)
T TIGR01857      1111 NDINRHVSKIVRTRIA-STNSPWLSGVSVGDIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDFNGKPSMDSKYNPN 1189 (1239)
T ss_pred             cCCCCeEEeeeEEEEC-CCCChhHhcCCCCCEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCCCCCcccCCCCCCC
Confidence            3323222333333333 35778887764  446777778653   2111   122334444333             223


Q ss_pred             C---ceEEEeeCCCCceEEEecCCCCcCC--------CchHHHHHHHHHH
Q 030626          125 G---LIMAARHKKYKHLQGVQFHPESIIT--------TEGKTIVRNFIKM  163 (174)
Q Consensus       125 ~---~i~a~~~~~~~~~~g~QfHPE~~~~--------~~~~~l~~~f~~~  163 (174)
                      +   .|+++...+++ ++|++.||||...        .++..||++.++.
T Consensus      1190 GS~~~IaGi~s~dGr-vlg~MpHpER~~~~~~~~~~g~~~~~iF~~~v~y 1238 (1239)
T TIGR01857      1190 GSSLAIEGITSPDGR-IFGKMGHSERYGDGLFKNIPGNKDQHLFASGVKY 1238 (1239)
T ss_pred             CChhhhhEeECCCCC-EEEECCCcccccCcccCCCCchhhhHHHHHHHhh
Confidence            3   38999999875 9999999999632        2457899888753

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>TIGR01001 metA homoserine O-succinyltransferase

Probab=99.17  E-value=4.2e-10  Score=86.85  Aligned_cols=152  Identities=18%  Similarity=0.159  Sum_probs=102.5

Q ss_pred             HHHHHHhcCCCEEEeCCCCCCCCCc---chh--HHHHHH--cCCCCcEEeehHhHHHH-HHHhCCeeccCCCcccccccc
Q 030626            5 YLVSYCRKNPRGVLISPGPGAPQDS---GIS--LQTVLE--LGPTVPLFGVCMGLQCI-GEAFGGKIVRSPLGVMHGKSS   76 (174)
Q Consensus         5 ~~~~~~~~~~dgiii~GG~~~~~~~---~~~--~~~i~~--~~~~~PilGIC~G~Qll-~~~~gg~v~~~~~~~~~~~~~   76 (174)
                      .++++...++||+||+|-|--.-+.   ..|  +..|.+  ..+-..+|.||+|.|.. ....|-.-...+. ...|...
T Consensus        91 ~f~~ik~~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~-KlfGVf~  169 (300)
T TIGR01001        91 TFEAVKDRKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPE-KLSGVYK  169 (300)
T ss_pred             CHHHHhcCCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCC-ceEEeec
Confidence            3567878899999999998754322   222  233333  35778999999999995 4455655444542 2345443


Q ss_pred             eeEeccCCCCCcccCCCCceeecccccceecccCCC-CCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHH
Q 030626           77 LVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFP-SDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKT  155 (174)
Q Consensus        77 ~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~-~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~  155 (174)
                      ....   ..++|++++++.+.+.++..-.+..+.+. .++++++|.|++.-+..+..+++. -+=++.|||+    +...
T Consensus       170 h~~~---~~~pL~rGfdd~f~~PhSR~t~i~~~~i~~~~~L~vla~s~e~G~~l~~s~d~r-~vfi~GH~EY----d~~T  241 (300)
T TIGR01001       170 HDIA---PDSLLLRGFDDFFLAPHSRYADFDAEDIDKVTDLEILAESDEAGVYLAANKDER-NIFVTGHPEY----DAYT  241 (300)
T ss_pred             CccC---CCCccccCCCCccccCCCCCCCCCHHHHhcCCCCeEEecCCCcceEEEEcCCCC-EEEEcCCCcc----ChhH
Confidence            2211   57899999999988877665556643333 368999999987667777777665 5669999999    4556


Q ss_pred             HHHHHHHHHH
Q 030626          156 IVRNFIKMIV  165 (174)
Q Consensus       156 l~~~f~~~~~  165 (174)
                      |-+.+.+.+.
T Consensus       242 L~~EY~RD~~  251 (300)
T TIGR01001       242 LHQEYVRDIG  251 (300)
T ss_pred             HHHHHHHHHH
Confidence            6666665544

The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=99.02  E-value=2.3e-09  Score=97.75  Aligned_cols=149  Identities=18%  Similarity=0.214  Sum_probs=90.0

Q ss_pred             CCCEEEeCCCCCCCC--Ccch-h----------HHHHHH-c-CCCCcEEeehHhHHHHHHH---hCCe-----eccCCCc
Q 030626           13 NPRGVLISPGPGAPQ--DSGI-S----------LQTVLE-L-GPTVPLFGVCMGLQCIGEA---FGGK-----IVRSPLG   69 (174)
Q Consensus        13 ~~dgiii~GG~~~~~--~~~~-~----------~~~i~~-~-~~~~PilGIC~G~Qll~~~---~gg~-----v~~~~~~   69 (174)
                      ++++|+++||...-.  ..+. |          .+.+.+ . .++.++||||.|+|+|+..   +++.     +.++...
T Consensus      1100 ~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~~~~p~l~~N~s~ 1179 (1310)
T TIGR01735      1100 EFRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGTENWPHFVRNNSE 1179 (1310)
T ss_pred             heeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCCCCCceeeecCCC
Confidence            579999999965432  2222 2          233333 3 6889999999999999943   3332     4455444


Q ss_pred             ccccccceeEeccCCCCCcccCCCC-ceeecccccce---eccc----CCCCCCcEEEEEc-------------CCC---
Q 030626           70 VMHGKSSLVYYDEKGEDGLLAGLSN-PFTAGRYHSLV---IEKE----SFPSDALEVTAWT-------------EDG---  125 (174)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~H~~~---v~~~----~l~~~~~~~~a~s-------------~~~---  125 (174)
                      .....|..+.+.. .++.+++++.. .+.++..|+++   +..+    .+...+...+-+.             +++   
T Consensus      1180 ~fe~r~~~~~v~~-s~s~~~~~~~g~~l~~~vaHgEGr~~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~ 1258 (1310)
T TIGR01735      1180 RFEARVASVRVGE-SPSIMLRGMAGSRLPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYPLNPNGSPG 1258 (1310)
T ss_pred             CeEEeeeEEEECC-CCChhhhhcCCCEEEEEeEcCCCCeeeCCHHHHHHHHhCCeEEEEEeCCCCCccCCCCCCCCCChh
Confidence            4344455555543 46778877753 36667777542   1111    1223343333332             223   


Q ss_pred             ceEEEeeCCCCceEEEecCCCCcCC--------------CchHHHHHHHHHH
Q 030626          126 LIMAARHKKYKHLQGVQFHPESIIT--------------TEGKTIVRNFIKM  163 (174)
Q Consensus       126 ~i~a~~~~~~~~~~g~QfHPE~~~~--------------~~~~~l~~~f~~~  163 (174)
                      .|+++...+++ ++|++.||||...              ..+.+||+|...+
T Consensus      1259 ~IaGi~s~dGr-vl~~MpHPEr~~~~~q~~~~p~~~~~~~pw~~~F~na~~w 1309 (1310)
T TIGR01735      1259 GIAGITSCDGR-VTIMMPHPERVFRAWQNSWRPEDWDEDTPWLRLFRNARNW 1309 (1310)
T ss_pred             cceEeECCCCC-EEEEcCCHHHhhhHhhCCcCCCCCCCCCcHHHHHHHHHHh
Confidence            38999999875 9999999998421              1356777776643

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=99.00  E-value=4.1e-09  Score=95.79  Aligned_cols=150  Identities=21%  Similarity=0.211  Sum_probs=89.3

Q ss_pred             CCCEEEeCCCCC--CCCCcchh-----------HHHHHH-c-CCCCcEEeehHhHHHHHHH--hCCe-------------
Q 030626           13 NPRGVLISPGPG--APQDSGIS-----------LQTVLE-L-GPTVPLFGVCMGLQCIGEA--FGGK-------------   62 (174)
Q Consensus        13 ~~dgiii~GG~~--~~~~~~~~-----------~~~i~~-~-~~~~PilGIC~G~Qll~~~--~gg~-------------   62 (174)
                      ++++|+++||..  +..+.+..           .+.+.+ + .++.++||||.|+|+|+..  +.+.             
T Consensus      1082 ~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~~~~~~~~~~~~e~ 1161 (1307)
T PLN03206       1082 DFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQVGGGLGAGGDPS 1161 (1307)
T ss_pred             ceeEEEEcCcCCCccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCCccccccccccccC
Confidence            689999999974  44444421           233333 3 4689999999999999875  1111             


Q ss_pred             ---eccCCCcccccccceeEeccCCCCCcccCCCC-ceeeccccccee---ccc----CCCCCCcEEEEE----------
Q 030626           63 ---IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN-PFTAGRYHSLVI---EKE----SFPSDALEVTAW----------  121 (174)
Q Consensus        63 ---v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~H~~~v---~~~----~l~~~~~~~~a~----------  121 (174)
                         +.++........|..+.+ ...++.+++++.. .+.++..|++.-   ..+    .+..++...+-+          
T Consensus      1162 ~p~l~~N~s~rfesr~v~v~V-~~s~si~l~~~~G~~l~i~vaHgEGr~~~~~~~~l~~l~~~gqva~rY~d~~g~~t~~ 1240 (1307)
T PLN03206       1162 QPRFVHNESGRFECRFTSVTI-EDSPAIMLKGMEGSTLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTEQ 1240 (1307)
T ss_pred             CceeeecCCCCeEEeceEEEE-CCCCChhhcccCCCEEEEEEEcCCCCeecCCHHHHHHHHhcCeEEEEEeCCCCCccCC
Confidence               222222222233444444 3357778877653 366677776432   111    122334443333          


Q ss_pred             ---cCCC---ceEEEeeCCCCceEEEecCCCCcCC------------------CchHHHHHHHHHHH
Q 030626          122 ---TEDG---LIMAARHKKYKHLQGVQFHPESIIT------------------TEGKTIVRNFIKMI  164 (174)
Q Consensus       122 ---s~~~---~i~a~~~~~~~~~~g~QfHPE~~~~------------------~~~~~l~~~f~~~~  164 (174)
                         ++++   .|+++...+++ ++|++.||||...                  ..+.+||+|...++
T Consensus      1241 yP~NPNGS~~~IAGi~s~dGR-vlgmMpHPER~~~~~q~~~~p~~~~~~~~~~spw~~~F~na~~w~ 1306 (1307)
T PLN03206       1241 YPFNPNGSPLGIAALCSPDGR-HLAMMPHPERCFLMWQFPWYPKEWGVDPAGPSPWLKMFQNAREWC 1306 (1307)
T ss_pred             CCCCCCCChhhceeeECCCCC-EEEEcCCHHHhhhhhhCCCCCccccccCCCCCcHHHHHHHHHHHh
Confidence               1223   38999999875 9999999998521                  13567888877654

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.95  E-value=1e-08  Score=93.80  Aligned_cols=150  Identities=19%  Similarity=0.254  Sum_probs=90.4

Q ss_pred             CCCEEEeCCCCCCCCC--cch-h----------HHHHHH-c-CCCCcEEeehHhHHHHHHHh---CC-----eeccCCCc
Q 030626           13 NPRGVLISPGPGAPQD--SGI-S----------LQTVLE-L-GPTVPLFGVCMGLQCIGEAF---GG-----KIVRSPLG   69 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~--~~~-~----------~~~i~~-~-~~~~PilGIC~G~Qll~~~~---gg-----~v~~~~~~   69 (174)
                      ++++|+++||...-..  .+. +          .+.+.+ + .++.++||||.|+|+|...-   .+     ++.++...
T Consensus      1080 ~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~~~~~p~l~~N~s~ 1159 (1290)
T PRK05297       1080 DFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPGAEHWPRFVRNRSE 1159 (1290)
T ss_pred             hCcEEEECCccCCcccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHhCCccCCCCCCCeEeecCCC
Confidence            6899999999654332  222 2          233433 3 67899999999999999861   11     23444433


Q ss_pred             ccccccceeEeccCCCCCcccCCCC-ceeecccccce---eccc---CCCCCCcEEEEE-------------cCCC---c
Q 030626           70 VMHGKSSLVYYDEKGEDGLLAGLSN-PFTAGRYHSLV---IEKE---SFPSDALEVTAW-------------TEDG---L  126 (174)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~H~~~---v~~~---~l~~~~~~~~a~-------------s~~~---~  126 (174)
                      .....|..+.+. ..++++++++.. .+.++-.|++.   .+.+   .+...+...+-+             ++++   .
T Consensus      1160 rfesr~~~~~v~-~~~s~~~~~~~g~~l~~~vaHgeGr~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~ 1238 (1290)
T PRK05297       1160 QFEARFSLVEVQ-ESPSIFLQGMAGSRLPIAVAHGEGRAEFPDAHLAALEAKGLVALRYVDNHGQVTETYPANPNGSPNG 1238 (1290)
T ss_pred             CeEEeeeEEEEC-CCCChhHhhcCCCEEEEEEEcCcccEEcCHHHHHHHHHCCcEEEEEECCCCCcccCCCCCCCCChhc
Confidence            333444444444 357788877753 36666677642   2111   122233333333             2233   3


Q ss_pred             eEEEeeCCCCceEEEecCCCCcCCC------------ch--HHHHHHHHHHH
Q 030626          127 IMAARHKKYKHLQGVQFHPESIITT------------EG--KTIVRNFIKMI  164 (174)
Q Consensus       127 i~a~~~~~~~~~~g~QfHPE~~~~~------------~~--~~l~~~f~~~~  164 (174)
                      |+++.+.+++ ++|++.||||....            ++  .++|+|...++
T Consensus      1239 IaGi~s~dGr-vlglMpHPEr~~~~~q~~~~p~~~~~~~PW~~~F~na~~w~ 1289 (1290)
T PRK05297       1239 ITGLTTADGR-VTIMMPHPERVFRTVQNSWHPEEWGEDSPWMRMFRNARKWV 1289 (1290)
T ss_pred             ceEeECCCCC-EEEEcCChHHhcchhhcCcCCCcccCCCHHHHHHHHHHHHh
Confidence            9999999875 99999999985321            35  67888776553

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=98.94  E-value=5.6e-09  Score=73.90  Aligned_cols=58  Identities=14%  Similarity=0.320  Sum_probs=40.1

Q ss_pred             CCchHHHHHHhcCCCEEEeCCCCCCCC----CcchhHHHHHH-c-CCCCcEEeehHhHHHHHHHhC
Q 030626            1 MSVNYLVSYCRKNPRGVLISPGPGAPQ----DSGISLQTVLE-L-GPTVPLFGVCMGLQCIGEAFG   60 (174)
Q Consensus         1 ~~~~~~~~~~~~~~dgiii~GG~~~~~----~~~~~~~~i~~-~-~~~~PilGIC~G~Qll~~~~g   60 (174)
                      |+++..+++.  ++|++||+||....-    ....+...+++ . ...+|+||.|.||-+|..-+.
T Consensus        46 ~tVKT~~D~a--q~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~ql~  109 (226)
T KOG3210|consen   46 MTVKTKNDLA--QCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQLS  109 (226)
T ss_pred             EeecCHHHHh--hCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhhhc
Confidence            4567777775  789999999976532    11123344444 3 455999999999999987544

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.69  E-value=1.1e-07  Score=79.10  Aligned_cols=50  Identities=18%  Similarity=0.343  Sum_probs=33.1

Q ss_pred             HHHHHhcCCCEEEeCCCCCC-CCCc-chhHHHHHHcCCCCcEEeehHhHHHHHHHh
Q 030626            6 LVSYCRKNPRGVLISPGPGA-PQDS-GISLQTVLELGPTVPLFGVCMGLQCIGEAF   59 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~-~~~~-~~~~~~i~~~~~~~PilGIC~G~Qll~~~~   59 (174)
                      .+++.  ++|+||||||.-. ..+. ..+.+.+++.  ++||||||.|||+|++..
T Consensus        31 ~~~l~--~~D~lILPGG~~~~~~~l~~~l~~~i~~~--g~pvlGICgG~QmLg~~~   82 (476)
T PRK06278         31 IKEIK--DLDGLIIPGGSLVESGSLTDELKKEILNF--DGYIIGICSGFQILSEKI   82 (476)
T ss_pred             hHHhc--cCCEEEECCCchhhcchHHHHHHHHHHHc--CCeEEEEcHHHHhccccc
Confidence            34553  6899999997422 1111 1223444444  799999999999999875

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=98.50  E-value=8.2e-07  Score=81.11  Aligned_cols=134  Identities=13%  Similarity=0.164  Sum_probs=73.8

Q ss_pred             CCCEEEeCCCCCCCCCc--ch-----------hHHHHHH-c-CCCCcEEeehH-hHHHHHHH--hCC-------------
Q 030626           13 NPRGVLISPGPGAPQDS--GI-----------SLQTVLE-L-GPTVPLFGVCM-GLQCIGEA--FGG-------------   61 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~--~~-----------~~~~i~~-~-~~~~PilGIC~-G~Qll~~~--~gg-------------   61 (174)
                      +++||+++||.+.-...  +.           +.+.+.+ + .++.++||||. |+|+|+..  ++.             
T Consensus       973 ~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~~~~~~~~~~~~~~ 1052 (1202)
T TIGR01739       973 TFSGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLALNIVGYTQSSPFITVPTEV 1052 (1202)
T ss_pred             heEEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHcCCCcCCcccccccccccc
Confidence            67899998887644322  22           1233333 3 56899999998 99999974  110             


Q ss_pred             ----eeccCCCcccccccceeEeccCCCCCcccCCCCc-eeecccccc----eeccc----CCCCCCcEEEEEc------
Q 030626           62 ----KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNP-FTAGRYHSL----VIEKE----SFPSDALEVTAWT------  122 (174)
Q Consensus        62 ----~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~H~~----~v~~~----~l~~~~~~~~a~s------  122 (174)
                          ++.++..+.....|..+++....++.+++++... +..+. |+.    .+..+    .+...+...+-+.      
T Consensus      1053 ~~~~~l~~N~s~~fesr~~~v~i~~~s~si~~~~~~g~~lp~wv-~g~~~g~~~~~~~~~~~l~~~g~va~~Y~d~~~~~ 1131 (1202)
T TIGR01739      1053 QEPPRLEKNASGLYESRWLNFYIPETTKSVFLRPLRGSVLPCWA-QGTHLGLYHPDDGVEEELENSGQIASTFHGNSPSS 1131 (1202)
T ss_pred             cCCceeeecCCCCeEEeeeEEEeCCCCCChhhhhcCCCEeccce-EeccCCcEECCHHHHHHHHhCCeEEEEEeCCCCCC
Confidence                1222222222334444555433566677766533 33332 322    12111    1222233222221      


Q ss_pred             ----------CC--CceEEEeeCCCCceEEEecCCCCc
Q 030626          123 ----------ED--GLIMAARHKKYKHLQGVQFHPESI  148 (174)
Q Consensus       123 ----------~~--~~i~a~~~~~~~~~~g~QfHPE~~  148 (174)
                                ++  ..|+++...++. ++|+++|||+.
T Consensus      1132 g~~a~~yP~NPNGS~~IAGi~s~dGR-~l~lMphPer~ 1168 (1202)
T TIGR01739      1132 GLPATNYPRNPSGGSNVAGLCSADGR-HLALLIDPSLS 1168 (1202)
T ss_pred             CccccCCCCCCCcCcceeeEECCCCC-EEEecCCHHHh
Confidence                      11  248999999875 99999999985

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>PHA03366 FGAM-synthase; Provisional

Probab=98.48  E-value=1.1e-06  Score=80.68  Aligned_cols=153  Identities=12%  Similarity=0.145  Sum_probs=83.2

Q ss_pred             CCCEEEeCCCCCCCCCcc--h-h----------HHHHHH-c-CCCCcEEeehH-hHHHHHHH--hC--------------
Q 030626           13 NPRGVLISPGPGAPQDSG--I-S----------LQTVLE-L-GPTVPLFGVCM-GLQCIGEA--FG--------------   60 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~--~-~----------~~~i~~-~-~~~~PilGIC~-G~Qll~~~--~g--------------   60 (174)
                      +++||+++||.+.-+..+  . +          .+.+.+ . .++.++||||. |+|+|+..  +|              
T Consensus      1072 ~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~~~~~~~~p~g~i~~ 1151 (1304)
T PHA03366       1072 EFSGLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAVGSTAPSPVPGTETEE 1151 (1304)
T ss_pred             cceEEEEcCCCCCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCccCCcccccccccccc
Confidence            578999999977543322  1 1          233443 3 46899999998 99999874  21              


Q ss_pred             ---CeeccCCCcccccccceeEeccCCCCCcccCCCCc-eeecccccce---eccc----CCCCCCcEEEEEc-------
Q 030626           61 ---GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNP-FTAGRYHSLV---IEKE----SFPSDALEVTAWT-------  122 (174)
Q Consensus        61 ---g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~H~~~---v~~~----~l~~~~~~~~a~s-------  122 (174)
                         .++.++..+.....|..+++....++.+++++... +-++..|.+.   ...+    .+...+...+-+.       
T Consensus      1152 ~~~~~l~~N~s~rfesr~~~v~i~~~s~Si~l~~~~Gs~lP~w~~g~~~~~~~~~~~~~~~l~~~~~ia~~Y~d~~~~~g 1231 (1304)
T PHA03366       1152 QWPITLEPNASGLYESRWLNFYIPETTKSVALRPLRGSVLPCWAQGTHLGFRYPNDGMEYILRNSGQIAATFHGADVDPG 1231 (1304)
T ss_pred             CCCCeEeeeCCCCeEeeceEEEeCCCCCCccccccCCCCCCEEeCCCccccccCCHHHHHHHHhCCcEEEEEeCCCCCcC
Confidence               22333333333344444555433456666665422 2233222220   1110    1112222222221       


Q ss_pred             ---------CC--CceEEEeeCCCCceEEEecCCCCcCC---------Cc-----h--HHHHHHHHHHHHH
Q 030626          123 ---------ED--GLIMAARHKKYKHLQGVQFHPESIIT---------TE-----G--KTIVRNFIKMIVR  166 (174)
Q Consensus       123 ---------~~--~~i~a~~~~~~~~~~g~QfHPE~~~~---------~~-----~--~~l~~~f~~~~~~  166 (174)
                               ++  ..|+++...++. ++|+++|||+...         ..     +  .++|+|-..++.+
T Consensus      1232 ~~t~~yP~NPNGS~~IaGi~s~dGR-~l~mMphPer~~~~~q~~~~P~~~~~~~~sPW~~mF~na~~W~~~ 1301 (1304)
T PHA03366       1232 NPARHYPRNPTGNSNVAGLCSADGR-HLALLFDPSLSFHPWQWQHVPPENGPLKVSPWKLMFQDLHLWCLK 1301 (1304)
T ss_pred             ccccCCCCCCCcCcceeeEECCCCC-EEEecCCHHHhhhhhhCCCCCcccCCCCCChHHHHHHHHHHHHHh
Confidence                     11  348999999875 9999999998522         11     2  2577776666654

>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]

Probab=98.48  E-value=1.2e-06  Score=66.20  Aligned_cols=140  Identities=19%  Similarity=0.126  Sum_probs=89.0

Q ss_pred             HHHHHHhcCCCEEEeCCCCCCCCCcch---h--HHHHHH--cCCCCcEEeehHhHHHHHHHhCC-eeccCCCcccccccc
Q 030626            5 YLVSYCRKNPRGVLISPGPGAPQDSGI---S--LQTVLE--LGPTVPLFGVCMGLQCIGEAFGG-KIVRSPLGVMHGKSS   76 (174)
Q Consensus         5 ~~~~~~~~~~dgiii~GG~~~~~~~~~---~--~~~i~~--~~~~~PilGIC~G~Qll~~~~gg-~v~~~~~~~~~~~~~   76 (174)
                      .++++.+.++||+||+|-|----+..+   |  ++.|.+  -.+=.-.|-||+|.|.-...+=| .-...+. ...|...
T Consensus        91 tfeeVk~~~FDG~IiTGAPve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~-Kl~GVy~  169 (307)
T COG1897          91 TFEEVKDQKFDGLIITGAPVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPE-KLSGVYK  169 (307)
T ss_pred             cHHHHhhcccCceEEeCCcccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccch-hhhceee
Confidence            367888889999999998875433322   2  233444  23445689999999998776544 2233331 2234432


Q ss_pred             eeEeccCCCCCcccCCCCceeecccccceecccCC-CCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCc
Q 030626           77 LVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESI  148 (174)
Q Consensus        77 ~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~  148 (174)
                      ...  ....+.+++++.+.+.+.++..-.+.++.+ .-+++++++.|+..-+.-+..+++. -+=+-.|||+.
T Consensus       170 h~~--l~p~~~l~rGfdd~f~~PhSR~t~~~~e~i~~~~~LeIL~es~e~G~~l~a~k~~r-~ifv~gH~EYD  239 (307)
T COG1897         170 HDI--LSPHSLLTRGFDDSFLAPHSRYTDVPKEDILAVPDLEILAESKEAGVYLLASKDGR-NIFVTGHPEYD  239 (307)
T ss_pred             ccc--cCccchhhccCCccccCcccccccCCHHHHhhCCCceeeecccccceEEEecCCCC-eEEEeCCcchh
Confidence            221  224677899998888777665555544322 2357999999977666666666665 55567899974

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=98.47  E-value=9.7e-08  Score=70.67  Aligned_cols=48  Identities=17%  Similarity=0.288  Sum_probs=34.5

Q ss_pred             CCCEEEeCCCCCCCCCc-----chhHHHHHH-cCCCCcEEeehHhHHHHHHHhC
Q 030626           13 NPRGVLISPGPGAPQDS-----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG   60 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~-----~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~g   60 (174)
                      ++|+|||+||.....+.     ..+.+.|++ ...++|+||||.|+|+|+..+.
T Consensus        37 ~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~~   90 (194)
T cd01750          37 DADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYIV   90 (194)
T ss_pred             CCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhcc
Confidence            57999999997332111     123344554 5679999999999999999874

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=98.38  E-value=2.8e-07  Score=68.44  Aligned_cols=47  Identities=17%  Similarity=0.347  Sum_probs=33.2

Q ss_pred             CCCEEEeCCCCCCCC-----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHHh
Q 030626           13 NPRGVLISPGPGAPQ-----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF   59 (174)
Q Consensus        13 ~~dgiii~GG~~~~~-----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~   59 (174)
                      ++|+|||+||.....     ....+.+.|++ ..+++|++|||.|+|+|++.+
T Consensus        40 ~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~~   92 (198)
T cd03130          40 DADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLGESL   92 (198)
T ss_pred             CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHHh
Confidence            489999999853321     11123344554 567899999999999999875

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=98.35  E-value=1.5e-06  Score=62.25  Aligned_cols=48  Identities=19%  Similarity=0.285  Sum_probs=37.4

Q ss_pred             CCCEEEeCCCCCCCCCcc-----hhHHHHHH-cCCCCcEEeehHhHHHHHHHhC
Q 030626           13 NPRGVLISPGPGAPQDSG-----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG   60 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~-----~~~~~i~~-~~~~~PilGIC~G~Qll~~~~g   60 (174)
                      ++|+|+|+||.-..++..     .+.+.|++ ...+.||+|||.|+|+|.+.+-
T Consensus         7 ~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~   60 (158)
T PF07685_consen    7 DADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII   60 (158)
T ss_pred             CCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence            689999999966554332     24466665 6788999999999999999875

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=98.08  E-value=3.1e-05  Score=64.38  Aligned_cols=47  Identities=17%  Similarity=0.338  Sum_probs=34.9

Q ss_pred             CCCEEEeCCCCCCCCCc-----chhHHHHHH-cCCCCcEEeehHhHHHHHHHh
Q 030626           13 NPRGVLISPGPGAPQDS-----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAF   59 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~-----~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~   59 (174)
                      ++|+|+|+||.....+.     ..+.+.|++ ..++.||+|||.|+|+|++.+
T Consensus       286 ~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~i  338 (449)
T TIGR00379       286 DVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQSL  338 (449)
T ss_pred             CCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence            68999999997433221     113455554 567899999999999999987

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=97.89  E-value=1.5e-05  Score=51.92  Aligned_cols=44  Identities=30%  Similarity=0.676  Sum_probs=34.8

Q ss_pred             cCCCEEEeCCCCCCCCCc---chhHHHHHH-cCCCCcEEeehHhHHHH
Q 030626           12 KNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI   55 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~~~---~~~~~~i~~-~~~~~PilGIC~G~Qll   55 (174)
                      .++|+|+++||.......   ...++.+.+ ..+++|++|+|.|+|++
T Consensus        45 ~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l   92 (115)
T cd01653          45 DDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL   92 (115)
T ss_pred             hccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence            368999999998876654   445555655 56789999999999999

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>PRK00784 cobyric acid synthase; Provisional

Probab=97.87  E-value=1.1e-05  Score=67.74  Aligned_cols=47  Identities=17%  Similarity=0.273  Sum_probs=35.0

Q ss_pred             CCCEEEeCCCCCCCCCcc-----hhHHHHHH-cCCCCcEEeehHhHHHHHHHh
Q 030626           13 NPRGVLISPGPGAPQDSG-----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAF   59 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~-----~~~~~i~~-~~~~~PilGIC~G~Qll~~~~   59 (174)
                      ++|+|+|+||.....+..     .+.+.|++ ...++|+||||.|+|+|+..+
T Consensus       290 ~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~~  342 (488)
T PRK00784        290 DADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRRI  342 (488)
T ss_pred             cCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhhc
Confidence            689999999975443211     13345554 567899999999999999987

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=97.86  E-value=8.7e-06  Score=68.09  Aligned_cols=47  Identities=19%  Similarity=0.269  Sum_probs=34.6

Q ss_pred             CCCEEEeCCCCCCCCCcc-----hhHHHHHH-cCCCCcEEeehHhHHHHHHHh
Q 030626           13 NPRGVLISPGPGAPQDSG-----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAF   59 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~-----~~~~~i~~-~~~~~PilGIC~G~Qll~~~~   59 (174)
                      ++|+|+|+||.....+..     .+.+.|++ ...+.||+|||.|+|+|++.+
T Consensus       284 ~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~i  336 (475)
T TIGR00313       284 GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKEL  336 (475)
T ss_pred             cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhhhh
Confidence            689999999974333321     13355554 567899999999999999976

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=97.83  E-value=3.7e-05  Score=57.88  Aligned_cols=55  Identities=13%  Similarity=0.136  Sum_probs=40.5

Q ss_pred             HHHHHHhcCCCEEEeCCCCCCCC---C----------cchhHHHHHH-cCCCCcEEeehHhHHHHHHHh
Q 030626            5 YLVSYCRKNPRGVLISPGPGAPQ---D----------SGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF   59 (174)
Q Consensus         5 ~~~~~~~~~~dgiii~GG~~~~~---~----------~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~   59 (174)
                      .++++...+||+|+|+||.+...   +          ...+.+.+++ ..+++||.+||.|-++|+.++
T Consensus        77 ~l~~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~  145 (217)
T PRK11780         77 DLAEADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL  145 (217)
T ss_pred             chhHCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence            34566556799999999976421   1          2334555655 678899999999999999876

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=97.75  E-value=3.5e-05  Score=64.13  Aligned_cols=48  Identities=17%  Similarity=0.317  Sum_probs=35.6

Q ss_pred             CCCEEEeCCCCCCCC-----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhC
Q 030626           13 NPRGVLISPGPGAPQ-----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG   60 (174)
Q Consensus        13 ~~dgiii~GG~~~~~-----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~g   60 (174)
                      ++|+|+|+||....+     ....+.+.+++ ..+++|++|||.|+|+|+..+-
T Consensus       287 ~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~i~  340 (451)
T PRK01077        287 DCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGESLE  340 (451)
T ss_pred             CCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhhhc
Confidence            689999999964322     11224455654 5688999999999999999873

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=97.70  E-value=2.9e-05  Score=48.24  Aligned_cols=45  Identities=29%  Similarity=0.637  Sum_probs=34.2

Q ss_pred             hcCCCEEEeCCCCCCCCCc---chhHHHHHH-cCCCCcEEeehHhHHHH
Q 030626           11 RKNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI   55 (174)
Q Consensus        11 ~~~~dgiii~GG~~~~~~~---~~~~~~i~~-~~~~~PilGIC~G~Qll   55 (174)
                      ..++|+||++||.......   ...++.+.+ ..++.|++|+|.|+|++
T Consensus        44 ~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~   92 (92)
T cd03128          44 LDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL   92 (92)
T ss_pred             cccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence            3468999999998877654   444555544 56689999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=97.64  E-value=3.2e-05  Score=63.84  Aligned_cols=47  Identities=21%  Similarity=0.440  Sum_probs=35.0

Q ss_pred             CCCEEEeCCCCCCCCCc----chhHHHHHH-cCCCCcEEeehHhHHHHHHHh
Q 030626           13 NPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAF   59 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~----~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~   59 (174)
                      ++|+|+|+||.-..++.    ...++.+++ ...+.||+|||.|+|+|++.+
T Consensus       274 ~~D~l~lpGG~~e~~~~~L~~n~~~~~i~~~~~~G~pi~aeCGG~q~L~~~i  325 (433)
T PRK13896        274 DCDGVYLPGGYPELHADALADSPALDELADRAADGLPVLGECGGLMALAESL  325 (433)
T ss_pred             CCCEEEeCCCchhhHHHHHHhCCcHHHHHHHHHCCCcEEEEehHHHHhhccc
Confidence            57999999998544331    112355554 578899999999999999887

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=97.59  E-value=6.8e-05  Score=54.63  Aligned_cols=46  Identities=20%  Similarity=0.270  Sum_probs=34.6

Q ss_pred             CCCEEEeCCCCCCCC--CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           13 NPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        13 ~~dgiii~GG~~~~~--~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ++|+|+++||++...  ......+.+++ ..+++|+.|||.|.++|+.+
T Consensus        76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a  124 (180)
T cd03169          76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA  124 (180)
T ss_pred             HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence            589999999975322  22334455554 56789999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]

Probab=97.58  E-value=0.00037  Score=61.20  Aligned_cols=134  Identities=17%  Similarity=0.217  Sum_probs=77.4

Q ss_pred             CCCEEEeCCCCCCCCCcc--h-h----------HHHHHH--cCCCCcEEeehHhHHHHHHH--hCCeeccCC--------
Q 030626           13 NPRGVLISPGPGAPQDSG--I-S----------LQTVLE--LGPTVPLFGVCMGLQCIGEA--FGGKIVRSP--------   67 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~--~-~----------~~~i~~--~~~~~PilGIC~G~Qll~~~--~gg~v~~~~--------   67 (174)
                      +|-||+.+||.....-.+  + |          ...+.+  ..+..=-||||.|.|+|++.  .+-.+...+        
T Consensus      1103 ~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i~p~~~~~p~~~l~~Ne 1182 (1320)
T KOG1907|consen 1103 DFRGLAFCGGFSYADVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWIGPEVGKWPDVFLDHNE 1182 (1320)
T ss_pred             HhcceeeecCcchHhhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHHhcccCccccCCCceeeeccc
Confidence            477999999976543211  1 1          122222  13455579999999999975  222222222        


Q ss_pred             CcccccccceeEeccCCCCCcccCCCC-ceeeccccccee---cc----cCCCCCCcEEEEEcCC-------------Cc
Q 030626           68 LGVMHGKSSLVYYDEKGEDGLLAGLSN-PFTAGRYHSLVI---EK----ESFPSDALEVTAWTED-------------GL  126 (174)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~H~~~v---~~----~~l~~~~~~~~a~s~~-------------~~  126 (174)
                      .+...+.+..+++. ...+-++.++.. .+-++..|+.+=   ..    +.+..+++..+-+.+|             +.
T Consensus      1183 s~rfE~r~~~vkI~-~~~SIml~gM~gs~LgvwvAHGEGRa~f~~e~~~e~~~~~gl~~iryvdd~g~~te~yPfNpNGS 1261 (1320)
T KOG1907|consen 1183 SGRFECRFGMVKIE-SNVSIMLSGMAGSVLGVWVAHGEGRATFRSEQNLEHLKKEGLVCIRYVDDYGNVTELYPFNPNGS 1261 (1320)
T ss_pred             ccceeeeEEEEEeC-CCchhhhccccCCceeeEEEecccceecCcHHHHHHHhhcCeeEEEEecCCCCEeeecccCCCCC
Confidence            22223334444444 234445666653 466777887532   11    1234456666655432             22


Q ss_pred             ---eEEEeeCCCCceEEEecCCCCc
Q 030626          127 ---IMAARHKKYKHLQGVQFHPESI  148 (174)
Q Consensus       127 ---i~a~~~~~~~~~~g~QfHPE~~  148 (174)
                         |++++..++. .++++.||||.
T Consensus      1262 ~~gIAgicSpdGR-hLAMMPHpER~ 1285 (1320)
T KOG1907|consen 1262 PDGIAGICSPDGR-HLAMMPHPERV 1285 (1320)
T ss_pred             cccceeeeCCCCC-eeeccCCchhe
Confidence               8899999876 99999999985

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=97.55  E-value=0.00016  Score=54.20  Aligned_cols=55  Identities=18%  Similarity=0.249  Sum_probs=39.4

Q ss_pred             HHHHHhcCCCEEEeCCCCCCC---CC----------cchhHHHHHH-cCCCCcEEeehHhHHHHHHHhC
Q 030626            6 LVSYCRKNPRGVLISPGPGAP---QD----------SGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG   60 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~---~~----------~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~g   60 (174)
                      ++++...+||+|+|+||.+..   .+          ...+.+.+++ ..+++|+.+||.|-++|+.+.+
T Consensus        75 l~ev~~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~  143 (213)
T cd03133          75 LAKLKAADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG  143 (213)
T ss_pred             hHHCCHhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence            345444469999999997632   11          2335555655 6788999999999999998764

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=97.54  E-value=5.1e-05  Score=51.22  Aligned_cols=42  Identities=12%  Similarity=0.226  Sum_probs=28.9

Q ss_pred             cCCCEEEeCCCCCCCCCcchh-----HHHHHH-cCCCCcEEeehHhHHHH
Q 030626           12 KNPRGVLISPGPGAPQDSGIS-----LQTVLE-LGPTVPLFGVCMGLQCI   55 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~~~~~~-----~~~i~~-~~~~~PilGIC~G~Qll   55 (174)
                      .++|.||+|||....  ....     .+.|++ ..++.|+||||+|.-+.
T Consensus        43 ~~ad~lVlPGGa~~~--~~~~L~~~g~~~i~~~v~~g~p~LGIClGAy~a   90 (114)
T cd03144          43 SKTALLVVPGGADLP--YCRALNGKGNRRIRNFVRNGGNYLGICAGAYLA   90 (114)
T ss_pred             hCCCEEEECCCChHH--HHHHHHhhCcHHHHHHHHCCCcEEEEecCccce
Confidence            368999999854432  2111     344554 56789999999998776

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=97.54  E-value=7.5e-05  Score=53.54  Aligned_cols=52  Identities=17%  Similarity=0.203  Sum_probs=36.7

Q ss_pred             HHHHhcCCCEEEeCCCCCCCC--CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626            7 VSYCRKNPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus         7 ~~~~~~~~dgiii~GG~~~~~--~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      +++...++|+|+++||++...  ......+.+++ ..+++|+.+||.|.++|+.+
T Consensus        54 ~~~~~~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a  108 (166)
T TIGR01382        54 DEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISA  108 (166)
T ss_pred             hhCCHHHCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence            333333589999999976321  22344555655 56789999999999999974

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=97.45  E-value=0.00019  Score=54.57  Aligned_cols=52  Identities=10%  Similarity=0.054  Sum_probs=38.7

Q ss_pred             HHHHhcCCCEEEeCCCCCCCC---CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626            7 VSYCRKNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus         7 ~~~~~~~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      +++...+||+|+|+||.+...   +...+.+.+++ ..+++||-.||.|-++|+.+
T Consensus        88 ~dv~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a  143 (231)
T cd03147          88 DEVNPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL  143 (231)
T ss_pred             hHCCHhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence            444445799999999977433   33345566665 57789999999999999876

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=97.43  E-value=0.00017  Score=51.56  Aligned_cols=47  Identities=15%  Similarity=0.213  Sum_probs=35.1

Q ss_pred             cCCCEEEeCCCCCCC--CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~~~--~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .++|+|+++||++..  .+...+.+.+++ ..+++|+.|||.|.++|+.+
T Consensus        61 ~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~a  110 (165)
T cd03134          61 DDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISA  110 (165)
T ss_pred             HHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHhc
Confidence            358999999998432  123445566654 57889999999999999974

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=97.39  E-value=7.9e-05  Score=61.65  Aligned_cols=47  Identities=21%  Similarity=0.345  Sum_probs=31.6

Q ss_pred             CCCEEEeCCCCCCCCCcch-----hHHHHHH-cCCCCcEEeehHhHHHHHHHh
Q 030626           13 NPRGVLISPGPGAPQDSGI-----SLQTVLE-LGPTVPLFGVCMGLQCIGEAF   59 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~-----~~~~i~~-~~~~~PilGIC~G~Qll~~~~   59 (174)
                      ++|.|||+|......|...     +.+.+.+ ...+.||+|||.|+|+|...+
T Consensus       290 ~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~~i  342 (486)
T COG1492         290 DADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRRL  342 (486)
T ss_pred             CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhhhh
Confidence            3788887766444333211     2344555 556899999999999998764

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=97.23  E-value=0.00049  Score=49.67  Aligned_cols=47  Identities=13%  Similarity=0.159  Sum_probs=35.2

Q ss_pred             cCCCEEEeCCCCCCC-CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPGPGAP-QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~~~-~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .++|.|+|+||.... .....+.+.+++ ..++.++.+||-|.++|+.+
T Consensus        59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  107 (170)
T cd03140          59 EDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALARA  107 (170)
T ss_pred             hHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence            368999999997532 223345566665 56789999999999999985

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=97.15  E-value=8.1e-05  Score=52.48  Aligned_cols=53  Identities=21%  Similarity=0.328  Sum_probs=37.8

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCC----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ++++...+||+|+|+||.+...    +...+.+.+++ ...++||.+||.|-.+|+.+
T Consensus        30 l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~   87 (147)
T PF01965_consen   30 LDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA   87 (147)
T ss_dssp             GGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred             HHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence            4556566799999999988432    22455666665 56789999999999888875

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=97.08  E-value=0.0007  Score=51.09  Aligned_cols=52  Identities=15%  Similarity=0.128  Sum_probs=38.2

Q ss_pred             HHHHhcCCCEEEeCCCCCCCC---CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626            7 VSYCRKNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus         7 ~~~~~~~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      +++...++|+|+|+||.+...   +...+.+.+++ ..++++|.+||-|-.+|+.+
T Consensus        84 ~~~~~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a  139 (221)
T cd03141          84 SDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV  139 (221)
T ss_pred             hHCCHhHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence            444444689999999986432   33445566655 56789999999999999975

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=97.08  E-value=0.00053  Score=51.43  Aligned_cols=49  Identities=14%  Similarity=0.086  Sum_probs=33.8

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcch------hHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~------~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .+.|.  ++|+|+++||  +......      +.+.+++ ..++.|++|||.|+|++...
T Consensus        75 ~~~l~--~ad~I~l~GG--~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~  130 (212)
T cd03146          75 LDALL--EADVIYVGGG--NTFNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWFPS  130 (212)
T ss_pred             HHHHh--cCCEEEECCc--hHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence            44443  6899999996  4432222      2344444 56789999999999999975

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=97.03  E-value=0.00071  Score=49.54  Aligned_cols=47  Identities=19%  Similarity=0.263  Sum_probs=36.8

Q ss_pred             cCCCEEEeCCC-CCCCCCc--chhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPG-PGAPQDS--GISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG-~~~~~~~--~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .+||+|+++|| .+.-...  ..+++.+++ ...++||..||.|-++|+.+
T Consensus        65 ~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~a  115 (188)
T COG0693          65 ADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAA  115 (188)
T ss_pred             hHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhcc
Confidence            47999999999 6654433  356666665 56799999999999999965

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=97.03  E-value=0.0014  Score=47.85  Aligned_cols=47  Identities=19%  Similarity=0.301  Sum_probs=36.4

Q ss_pred             cCCCEEEeCCCCCCC--CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~~~--~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .++|.|+|+||.+..  .+...+.+.+++ ..++++|.+||-|.++|+.+
T Consensus        63 ~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a  112 (187)
T cd03137          63 AAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEA  112 (187)
T ss_pred             CCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence            368999999997654  334455666665 56789999999999999975

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=96.89  E-value=0.0013  Score=46.80  Aligned_cols=47  Identities=13%  Similarity=0.210  Sum_probs=35.4

Q ss_pred             cCCCEEEeCCCCCCC---CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~~~---~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .++|.|+|+||++..   .+...+.+.+++ ..+++++.+||-|..+|+.+
T Consensus        59 ~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~a  109 (163)
T cd03135          59 DDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKA  109 (163)
T ss_pred             CCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence            478999999997322   233445566654 56789999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=96.79  E-value=0.0018  Score=45.22  Aligned_cols=46  Identities=26%  Similarity=0.255  Sum_probs=35.2

Q ss_pred             CCCEEEeCCCCCCC---CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           13 NPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        13 ~~dgiii~GG~~~~---~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ++|+|+|+||.+..   .+...+.+.+++ ..+++|+.+||-|-.+|+.+
T Consensus        62 ~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~a  111 (142)
T cd03132          62 LFDAVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEAA  111 (142)
T ss_pred             hcCEEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence            58999999997643   233445566655 56789999999999999974

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>PRK04155 chaperone protein HchA; Provisional

Probab=96.69  E-value=0.0024  Score=50.13  Aligned_cols=48  Identities=21%  Similarity=0.187  Sum_probs=35.7

Q ss_pred             hcCCCEEEeCCCCCCCCC---cchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           11 RKNPRGVLISPGPGAPQD---SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        11 ~~~~dgiii~GG~~~~~~---~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ..+||+|+|+||.+...+   ...+.+.++. ..+++||..||.|-++|..+
T Consensus       145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a  196 (287)
T PRK04155        145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA  196 (287)
T ss_pred             cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence            357999999999876442   3334455554 67889999999999877753

>TIGR01383 not_thiJ DJ-1 family protein

Probab=96.64  E-value=0.0024  Score=46.22  Aligned_cols=47  Identities=11%  Similarity=0.169  Sum_probs=35.1

Q ss_pred             cCCCEEEeCCCCCCC---CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~~~---~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .++|.|+|+||....   .+...+.+.+++ ..++++|.+||-|..+|+.+
T Consensus        62 ~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a  112 (179)
T TIGR01383        62 EEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAA  112 (179)
T ss_pred             ccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence            468999999986422   233445566665 56789999999999999985

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=96.60  E-value=0.0037  Score=45.92  Aligned_cols=46  Identities=20%  Similarity=0.299  Sum_probs=34.8

Q ss_pred             CCCEEEeCCCCCCCC-----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           13 NPRGVLISPGPGAPQ-----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        13 ~~dgiii~GG~~~~~-----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ++|.|+|+||.+...     ....+++.+++ ..++.+|.+||-|..+|+.+
T Consensus        69 ~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  120 (195)
T cd03138          69 APDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA  120 (195)
T ss_pred             CCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence            689999999865432     23445566665 56789999999999999974

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=96.59  E-value=0.0043  Score=45.73  Aligned_cols=46  Identities=13%  Similarity=0.151  Sum_probs=33.3

Q ss_pred             cCCCEEEeCCCCCCCC---CcchhHHHHHH-cCCCCcEEeehHhHHHHHH
Q 030626           12 KNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGE   57 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~   57 (174)
                      .++|.|+|+||.+...   +...+.+.+++ ..++++|.+||-|..+|..
T Consensus        65 ~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~  114 (196)
T PRK11574         65 GDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLV  114 (196)
T ss_pred             CCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence            3689999999975332   23345566655 5688999999999997654

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=96.56  E-value=0.034  Score=45.11  Aligned_cols=45  Identities=11%  Similarity=0.183  Sum_probs=34.5

Q ss_pred             CCCEEEeCCCCCCCCCcc---hhHHHHHH-cCCCCcEEeehHhHHHHHH
Q 030626           13 NPRGVLISPGPGAPQDSG---ISLQTVLE-LGPTVPLFGVCMGLQCIGE   57 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~---~~~~~i~~-~~~~~PilGIC~G~Qll~~   57 (174)
                      +++.+|++||...++...   .-.+.|++ +.++--.||||.|.-+-+.
T Consensus        49 ~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~   97 (367)
T PF09825_consen   49 KCALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYASS   97 (367)
T ss_pred             CCcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence            589999999998766432   22466776 6778999999999988765

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=96.56  E-value=0.0041  Score=47.32  Aligned_cols=47  Identities=19%  Similarity=0.145  Sum_probs=35.2

Q ss_pred             cCCCEEEeCCCCCCCCC---cchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPGPGAPQD---SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~~---~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .+||+|+|+||.+...+   ...+.+.+++ ..+++||-.||-|-++|..+
T Consensus        95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a  145 (232)
T cd03148          95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA  145 (232)
T ss_pred             hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence            47999999999775433   3334455554 67889999999999987754

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=96.49  E-value=0.0031  Score=45.12  Aligned_cols=47  Identities=19%  Similarity=0.298  Sum_probs=35.2

Q ss_pred             cCCCEEEeCCCCC--CCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPGPG--APQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~--~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ..+|.|||+||+.  .......+++.+++ ..++.++.+||-|..+|+++
T Consensus        60 ~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a  109 (166)
T PF13278_consen   60 PDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA  109 (166)
T ss_dssp             SCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred             ccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence            4689999999988  22333455666655 56789999999999999986

...

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=96.40  E-value=0.007  Score=43.88  Aligned_cols=46  Identities=17%  Similarity=0.237  Sum_probs=35.2

Q ss_pred             CCCEEEeCCCCCCC--CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           13 NPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        13 ~~dgiii~GG~~~~--~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .+|+|+|+||.+..  .....+.+.+++ ..+++++.+||-|..+|+.+
T Consensus        62 ~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a  110 (183)
T cd03139          62 DLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA  110 (183)
T ss_pred             CCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence            68999999997543  233445566665 67889999999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=96.35  E-value=0.00076  Score=50.22  Aligned_cols=51  Identities=16%  Similarity=0.279  Sum_probs=32.7

Q ss_pred             HHHhcCCCEEEeCCCCCCCC-----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626            8 SYCRKNPRGVLISPGPGAPQ-----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus         8 ~~~~~~~dgiii~GG~~~~~-----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ......+|.+++.||.....     +...-...+++ +..++|+|.||.|.|+|..+
T Consensus        47 ~~~~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y  103 (250)
T COG3442          47 TFPDDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY  103 (250)
T ss_pred             CCCcccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence            33444678888777654321     11111233443 78899999999999999875

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=95.83  E-value=0.018  Score=41.91  Aligned_cols=47  Identities=19%  Similarity=0.116  Sum_probs=35.0

Q ss_pred             cCCCEEEeCCCCCCCC-CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPGPGAPQ-DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~-~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .++|.|+|+||.+... .....++.+++ ..+++.|.+||-|..+|+.+
T Consensus        63 ~~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a  111 (185)
T cd03136          63 PPLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLARA  111 (185)
T ss_pred             CCCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence            3689999999865432 23345566655 56789999999999999974

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=95.29  E-value=0.036  Score=44.05  Aligned_cols=46  Identities=15%  Similarity=0.235  Sum_probs=33.9

Q ss_pred             CCCEEEeCCCCCCCCC-cchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           13 NPRGVLISPGPGAPQD-SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~-~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ++|.|||+||.+.... ...+.+.+++ ..++.+|.|||-|.-+|+.+
T Consensus        75 ~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a  122 (322)
T PRK09393         75 RADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAA  122 (322)
T ss_pred             CCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence            6899999998653322 3345555654 45779999999999999875

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=94.17  E-value=0.075  Score=40.09  Aligned_cols=49  Identities=14%  Similarity=0.146  Sum_probs=32.9

Q ss_pred             HHHhcCCCEEEeCCC-CCCCCC--cchhHHHHHH-cCCCCcEEeehHhHHHHH
Q 030626            8 SYCRKNPRGVLISPG-PGAPQD--SGISLQTVLE-LGPTVPLFGVCMGLQCIG   56 (174)
Q Consensus         8 ~~~~~~~dgiii~GG-~~~~~~--~~~~~~~i~~-~~~~~PilGIC~G~Qll~   56 (174)
                      +..+.+||.|||||| +|...-  ....-+.+++ ...++.+..||.|=-++.
T Consensus        62 D~~~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al  114 (247)
T KOG2764|consen   62 DVVDSKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTAL  114 (247)
T ss_pred             hhccccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHH
Confidence            333468999999999 886542  2233344443 567899999999864443

>PRK11249 katE hydroperoxidase II; Provisional

Probab=93.06  E-value=0.085  Score=46.59  Aligned_cols=46  Identities=15%  Similarity=0.079  Sum_probs=34.9

Q ss_pred             CCCEEEeCCCCCCCC---CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           13 NPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        13 ~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .+|+|+|+||.....   .....+..|++ ..+.++|.+||-|.++|+.+
T Consensus       658 ~FDAVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA  707 (752)
T PRK11249        658 TFDAVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKAAL  707 (752)
T ss_pred             CCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence            589999999865432   23345555655 67789999999999999964

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=92.61  E-value=0.079  Score=40.37  Aligned_cols=48  Identities=17%  Similarity=0.234  Sum_probs=33.2

Q ss_pred             CCCEEEeCCCCCCCC----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhC
Q 030626           13 NPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG   60 (174)
Q Consensus        13 ~~dgiii~GG~~~~~----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~g   60 (174)
                      +.|+|+++||.....    ....+.+.|++ +.+++|++|+|.|+-+++....
T Consensus        79 ~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i~  131 (233)
T PRK05282         79 NAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTIR  131 (233)
T ss_pred             cCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccce
Confidence            679999999955321    11123344543 6778999999999988877554

>COG4090 Uncharacterized protein conserved in archaea [Function unknown]

Probab=92.04  E-value=0.21  Score=34.32  Aligned_cols=52  Identities=23%  Similarity=0.183  Sum_probs=31.4

Q ss_pred             HHHhcC-CCEEEeCCCCCCCCCc--chhHHHHHHcCCCCcEEeehHhHHHHHHHhCC
Q 030626            8 SYCRKN-PRGVLISPGPGAPQDS--GISLQTVLELGPTVPLFGVCMGLQCIGEAFGG   61 (174)
Q Consensus         8 ~~~~~~-~dgiii~GG~~~~~~~--~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg   61 (174)
                      +..+++ .|.||+.||-.-|.-.  ..-.+.+.+-..+.|+.|+|+  |-|.+..|.
T Consensus        79 e~e~~n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~kkliGvCf--m~mF~ragW  133 (154)
T COG4090          79 EREELNSADVVVLLGGLAMPKIGVTPDDAKELLEELGNKKLIGVCF--MNMFERAGW  133 (154)
T ss_pred             CccccccccEEEEEcccccCcCCCCHHHHHHHHHhcCCCceEEeeH--HHHHHHcCc
Confidence            344455 8999999997766422  122233333334569999994  555554443

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=90.99  E-value=0.26  Score=36.72  Aligned_cols=46  Identities=20%  Similarity=0.345  Sum_probs=32.1

Q ss_pred             CCCEEEeCCCCCCCC----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           13 NPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        13 ~~dgiii~GG~~~~~----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      +.|+|+++||.-...    ......+.+.+ ..++.|+.|+|.|..++...
T Consensus        80 ~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~  130 (210)
T cd03129          80 EADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGET  130 (210)
T ss_pred             hCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence            689999999754321    11123344443 45789999999999999986

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function

Probab=88.83  E-value=0.11  Score=36.35  Aligned_cols=39  Identities=18%  Similarity=0.450  Sum_probs=24.5

Q ss_pred             hcCCCEEEeCCCCCCCCC---cchhHHHHHHcCCCCcEEeehH
Q 030626           11 RKNPRGVLISPGPGAPQD---SGISLQTVLELGPTVPLFGVCM   50 (174)
Q Consensus        11 ~~~~dgiii~GG~~~~~~---~~~~~~~i~~~~~~~PilGIC~   50 (174)
                      +.++|.|||.||-.-+.-   .....+.+.++.. ..++|||+
T Consensus        78 ~~~~D~vVlmGGLAMP~~~v~~e~v~~li~ki~~-~~iiGiCF  119 (147)
T PF09897_consen   78 DPHPDVVVLMGGLAMPKSGVTPEDVNELIKKISP-KKIIGICF  119 (147)
T ss_dssp             -S-EEEEEEEGGGGSTTTS--HHHHHHHHHHHEE-EEEEEEEE
T ss_pred             CCCCCEEEEEcccccCCCCCCHHHHHHHHHHhCc-CCEEEEeh
Confidence            446899999999776653   2334444555443 33999995

; PDB: 2R47_D.

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=88.17  E-value=1.1  Score=32.93  Aligned_cols=52  Identities=19%  Similarity=0.310  Sum_probs=34.6

Q ss_pred             hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHh
Q 030626            4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAF   59 (174)
Q Consensus         4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~   59 (174)
                      ++.+++.++.||+.+|=    ..+.....-..+.+...+++++|+|-|.|.+...+
T Consensus       126 ~ia~~i~~~~PdAw~iN----ytNP~~~vt~a~~r~~~~~k~vGlCh~~~~~~~~l  177 (183)
T PF02056_consen  126 DIARDIEELCPDAWLIN----YTNPMGIVTEALSRYTPKIKVVGLCHGPQGTRRQL  177 (183)
T ss_dssp             HHHHHHHHHTTTSEEEE-----SSSHHHHHHHHHHHSTTSEEEEE-SHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcEEEe----ccChHHHHHHHHHHhCCCCCEEEECCCHHHHHHHH
Confidence            45677888888888872    12233334455666666799999999999886643

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=86.51  E-value=1.7  Score=34.95  Aligned_cols=45  Identities=20%  Similarity=0.189  Sum_probs=33.5

Q ss_pred             CCEEEeCCCCCCCCCc--chhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           14 PRGVLISPGPGAPQDS--GISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        14 ~dgiii~GG~~~~~~~--~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      +|-|++++|-+.....  ..+...+++ ...+.++-|||-|.-+|+++
T Consensus        77 ~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a  124 (328)
T COG4977          77 IDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA  124 (328)
T ss_pred             ceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence            6777776765544333  335666665 67889999999999999986

>PLN02884 6-phosphofructokinase

Probab=86.51  E-value=0.84  Score=37.78  Aligned_cols=55  Identities=15%  Similarity=0.164  Sum_probs=40.4

Q ss_pred             hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEee-------------hHhHHHHHHH
Q 030626            4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGEA   58 (174)
Q Consensus         4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGI-------------C~G~Qll~~~   58 (174)
                      +..+.+.+++.|+||+-||.++......+.+...+.+..+|+.||             |.||...+..
T Consensus       134 ~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~~  201 (411)
T PLN02884        134 DIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEE  201 (411)
T ss_pred             HHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHHH
Confidence            456778888999999999998865555444444444455888888             9999988654

>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate

Probab=84.71  E-value=0.69  Score=37.26  Aligned_cols=54  Identities=7%  Similarity=0.102  Sum_probs=37.5

Q ss_pred             HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEee-------------hHhHHHHHHH
Q 030626            5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGEA   58 (174)
Q Consensus         5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGI-------------C~G~Qll~~~   58 (174)
                      ..+.+.+++.|++|+.||.++......+.+.+.+...++|+.||             |.||...+..
T Consensus        84 ~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~~  150 (338)
T cd00363          84 AAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKT  150 (338)
T ss_pred             HHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHHH
Confidence            45677888999999999988866555554544444444555554             8888877654

The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.

>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A

Probab=84.32  E-value=15  Score=27.34  Aligned_cols=102  Identities=16%  Similarity=0.100  Sum_probs=49.8

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhH-------HHHHHHhCCeeccCCCcccccccceeEeccCC
Q 030626           13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL-------QCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG   84 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~-------Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~   84 (174)
                      ++|.||+....+..- .....+.+.+ +.++.+++||..+.       .-....+||.....+.   . ....+. ....
T Consensus        52 ~~Dvvv~~~~~~~~l-~~~~~~al~~~v~~Ggglv~lH~~~~~~~~~~~~~~~l~Gg~f~~h~~---~-~~~~v~-~~~~  125 (217)
T PF06283_consen   52 GYDVVVFYNTGGDEL-TDEQRAALRDYVENGGGLVGLHGAATDSFPDWPEYNELLGGYFKGHPP---P-QPFTVR-VEDP  125 (217)
T ss_dssp             T-SEEEEE-SSCCGS--HHHHHHHHHHHHTT-EEEEEGGGGGCCHTT-HHHHHHHS--SEEEEC---E-EEEEEE-ESST
T ss_pred             CCCEEEEECCCCCcC-CHHHHHHHHHHHHcCCCEEEEcccccccchhHHHHHHeeCccccCCCC---C-ceEEEE-EcCC
Confidence            689999887764321 2233355554 67889999999443       1234466765544331   1 111122 3346


Q ss_pred             CCCcccCCCCceeecccccceecccCCCCCCcEEEEEcC
Q 030626           85 EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE  123 (174)
Q Consensus        85 ~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~  123 (174)
                      ++|+.++++..+.+.-- -|....  .+.+...++++..
T Consensus       126 ~HPi~~gl~~~f~~~DE-~Y~~~~--~~~~~~~vL~~~~  161 (217)
T PF06283_consen  126 DHPITRGLPESFTIYDE-WYYFLR--DPRPNVTVLLTAD  161 (217)
T ss_dssp             TSCCCTTS-SEEEEEEE-EEES-B--S---CEEEEEEEE
T ss_pred             CChhhcCCCCCceEccc-cccccc--CCCCCEEEEEEEE
Confidence            89999999876655211 111111  1334577777654

>PTZ00286 6-phospho-1-fructokinase; Provisional

Probab=83.56  E-value=1  Score=37.87  Aligned_cols=55  Identities=13%  Similarity=0.132  Sum_probs=40.6

Q ss_pred             hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEe-------------ehHhHHHHHHH
Q 030626            4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG-------------VCMGLQCIGEA   58 (174)
Q Consensus         4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilG-------------IC~G~Qll~~~   58 (174)
                      +.++.+.+++.|.|++-||.++-.....+.+.+.+.+.++|++|             -|+||+..+..
T Consensus       167 ~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~~  234 (459)
T PTZ00286        167 VMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEE  234 (459)
T ss_pred             HHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHHH
Confidence            45677888899999999999987666555555554444566666             59999988653

>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase

Probab=81.35  E-value=1.4  Score=37.85  Aligned_cols=54  Identities=15%  Similarity=0.253  Sum_probs=36.6

Q ss_pred             HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEee---------------hHhHHHHHHH
Q 030626            5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV---------------CMGLQCIGEA   58 (174)
Q Consensus         5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGI---------------C~G~Qll~~~   58 (174)
                      ..+.+.+++.|++|+.||.++-.....+.+.+.+.+.+++|.||               |.||...+..
T Consensus       153 ~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~  221 (539)
T TIGR02477       153 ALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKI  221 (539)
T ss_pred             HHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHH
Confidence            45667788999999999988765544443433333434555554               9999888664

Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.

>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=80.91  E-value=1.6  Score=33.79  Aligned_cols=34  Identities=15%  Similarity=0.186  Sum_probs=26.0

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhH
Q 030626           13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL   52 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~   52 (174)
                      ++|.+|..||-|.      +++.++. ...++|+|||-.|.
T Consensus        33 ~~D~vi~iGGDGT------~L~a~~~~~~~~iPilGIN~G~   67 (259)
T PRK00561         33 GADYLFVLGGDGF------FVSTAANYNCAGCKVVGINTGH   67 (259)
T ss_pred             CCCEEEEECCcHH------HHHHHHHhcCCCCcEEEEecCC
Confidence            4699999999774      4566554 45789999999884

>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional

Probab=80.84  E-value=1.4  Score=37.84  Aligned_cols=54  Identities=15%  Similarity=0.254  Sum_probs=36.6

Q ss_pred             HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEe---------------ehHhHHHHHHH
Q 030626            5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG---------------VCMGLQCIGEA   58 (174)
Q Consensus         5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilG---------------IC~G~Qll~~~   58 (174)
                      ..+.+.+++.|++|+.||.++-.....+.+...+...++||.|               .|+||...+..
T Consensus       156 i~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~  224 (555)
T PRK07085        156 CLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKT  224 (555)
T ss_pred             HHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHH
Confidence            4566778899999999998876555444443333333455555               49999888764

>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated

Probab=80.64  E-value=1.6  Score=36.07  Aligned_cols=54  Identities=11%  Similarity=0.030  Sum_probs=35.4

Q ss_pred             HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEe-------------ehHhHHHHHHH
Q 030626            5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG-------------VCMGLQCIGEA   58 (174)
Q Consensus         5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilG-------------IC~G~Qll~~~   58 (174)
                      ..+.+.+++.|++|+.||.++..-...+.+.+.+..-++|+.|             .|.|+...+..
T Consensus       104 ~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~TA~~~  170 (403)
T PRK06555        104 AAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAEQ  170 (403)
T ss_pred             HHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHHHHHH
Confidence            4566778899999999999876544444333333222355554             59999987654

>PRK14072 6-phosphofructokinase; Provisional

Probab=80.57  E-value=1.3  Score=36.74  Aligned_cols=54  Identities=13%  Similarity=0.153  Sum_probs=35.6

Q ss_pred             HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEe-------------ehHhHHHHHHH
Q 030626            5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG-------------VCMGLQCIGEA   58 (174)
Q Consensus         5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilG-------------IC~G~Qll~~~   58 (174)
                      ..+.+.+++.|++|+-||.++......+.+.+.+.+.++|+.|             .|.||...+..
T Consensus        95 ~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~~  161 (416)
T PRK14072         95 LLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAKY  161 (416)
T ss_pred             HHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHHH
Confidence            4556777899999999999886554444343332333355555             78898877653

>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional

Probab=80.54  E-value=1.5  Score=36.70  Aligned_cols=55  Identities=11%  Similarity=0.147  Sum_probs=38.0

Q ss_pred             hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHc-------------CCCCcEEeehHhHHHHHHH
Q 030626            4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLEL-------------GPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus         4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~-------------~~~~PilGIC~G~Qll~~~   58 (174)
                      +.++.+.+++.|.|++-||.|+-.....+.+.+.+.             ++++|..=-|+||+..+..
T Consensus       163 ~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~~  230 (443)
T PRK06830        163 EIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEK  230 (443)
T ss_pred             HHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHHH
Confidence            456778888999999999998765555444444333             3445555569999987653

>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin

Probab=80.39  E-value=0.38  Score=25.74  Aligned_cols=17  Identities=29%  Similarity=0.335  Sum_probs=11.5

Q ss_pred             CcEEeehHhHHHHHHHh
Q 030626           43 VPLFGVCMGLQCIGEAF   59 (174)
Q Consensus        43 ~PilGIC~G~Qll~~~~   59 (174)
                      --.-|-|+|.|+|..+-
T Consensus        30 dgtagacfgaqimvaak   46 (48)
T PF09075_consen   30 DGTAGACFGAQIMVAAK   46 (48)
T ss_dssp             SSS--TTTTTHHHHTTT
T ss_pred             cCccccccchhhhhhcc
Confidence            34678899999998653

The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=80.35  E-value=1  Score=37.33  Aligned_cols=142  Identities=16%  Similarity=0.198  Sum_probs=73.6

Q ss_pred             CCCEEEeCCCCCCCC-----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHHh---CCeeccCCC---cccccccce---
Q 030626           13 NPRGVLISPGPGAPQ-----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF---GGKIVRSPL---GVMHGKSSL---   77 (174)
Q Consensus        13 ~~dgiii~GG~~~~~-----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~---gg~v~~~~~---~~~~~~~~~---   77 (174)
                      ++|+|.|+||.--.+     +.....+.|++ ...++||+|=|.|+-.|+..+   .|....+..   .........   
T Consensus       288 ~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~m~~Rl~~l  367 (451)
T COG1797         288 DVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGESLEDADGDTYEMVGVLPGSTRMTKRLQAL  367 (451)
T ss_pred             CCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEecccceeehhheeccCCceeeeeeeeccchhhhhhhhcc
Confidence            489999999954333     22234566665 678899999999999999875   223333220   000000000   


Q ss_pred             -eEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEE--EcCCCc---eEEEeeCCCCceEEEecCCCCcCCC
Q 030626           78 -VYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTA--WTEDGL---IMAARHKKYKHLQGVQFHPESIITT  151 (174)
Q Consensus        78 -~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a--~s~~~~---i~a~~~~~~~~~~g~QfHPE~~~~~  151 (174)
                       ........+.++....+.++-..+|.-.+..   .++ .+...  ...++.   -.++...   +++|.=.|-=.   .
T Consensus       368 GY~~~~~~~d~~~~~~G~~irGHEFHyS~~~~---~~~-~~~a~~~~~g~g~~~~~~G~~~g---nv~asY~H~H~---~  437 (451)
T COG1797         368 GYREAEAVDDTLLLRAGEKIRGHEFHYSRLIT---EED-AEPAFRVRRGDGIDNGRDGYRSG---NVLASYLHLHF---A  437 (451)
T ss_pred             ceeEEEecCCcccccCCceeeeeeeeeeeccc---CCc-CceeeeeecccCccccccceeeC---CeEEEEEeeec---c
Confidence             0011112344444444567777777655432   111 11111  111122   2234333   48888777533   2


Q ss_pred             chHHHHHHHHHHH
Q 030626          152 EGKTIVRNFIKMI  164 (174)
Q Consensus       152 ~~~~l~~~f~~~~  164 (174)
                      ....+..+|++.|
T Consensus       438 s~~~~~~~~v~~~  450 (451)
T COG1797         438 SNPAFAARFVAAA  450 (451)
T ss_pred             cCHHHHHHHHHhh
Confidence            3466888888765

>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed

Probab=80.18  E-value=1.8  Score=33.32  Aligned_cols=34  Identities=24%  Similarity=0.401  Sum_probs=26.6

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhH
Q 030626           13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL   52 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~   52 (174)
                      ++|.+|..||-|.      +++..+. ...++|+|||-.|.
T Consensus        25 ~~Dlvi~iGGDGT------lL~a~~~~~~~~~PvlGIN~G~   59 (246)
T PRK04761         25 EADVIVALGGDGF------MLQTLHRYMNSGKPVYGMNRGS   59 (246)
T ss_pred             cCCEEEEECCCHH------HHHHHHHhcCCCCeEEEEeCCC
Confidence            5799999999775      4566665 45689999999885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
1qdl_B	195	The Crystal Structure Of Anthranilate Synthase From		1e-25
1i7q_B	193	Anthranilate Synthase From S. Marcescens Length = 1		1e-20
1i1q_B	192	Structure Of The Cooperative Allosteric Anthranilat		2e-20
1wl8_A	189	Crystal Structure Of Ph1346 Protein From Pyrococcus		2e-10
2d7j_A	209	Crystal Structure Analysis Of Glutamine Amidotransf		3e-10
1gpm_A	525	Escherichia Coli Gmp Synthetase Complexed With Amp		7e-09
2ywb_A	503	Crystal Structure Of Gmp Synthetase From Thermus Th		3e-07
2vpi_A	218	Human Gmp Synthetase - Glutaminase Domain Length =		3e-07
2vxo_A	697	Human Gmp Synthetase In Complex With Xmp Length = 6		5e-07
1m6v_B	382	Crystal Structure Of The G359f (Small Subunit) Poin		5e-07
2ywc_A	503	Crystal Structure Of Gmp Synthetase From Thermus Th		6e-07
1t36_B	382	Crystal Structure Of E. Coli Carbamoyl Phosphate Sy		6e-07
1jdb_C	382	Carbamoyl Phosphate Synthetase From Escherichia Col		1e-06
1c30_B	382	Crystal Structure Of Carbamoyl Phosphate Synthetase		2e-05
1cs0_B	382	Crystal Structure Of Carbamoyl Phosphate Synthetase		3e-05
1a9x_B	379	Carbamoyl Phosphate Synthetase: Caught In The Act O		2e-04
2a9v_A	212	Crystal Structure Of A Putative Gmp Synthase Subuni		2e-04
3tqi_A	527	Structure Of The Gmp Synthase (Guaa) From Coxiella		3e-04
3uow_A	556	Crystal Structure Of Pf10_0123, A Gmp Synthetase Fr		3e-04

>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From Sulfolobus Solfataricus Length = 195

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 90/157 (57%), Gaps = 7/157 (4%)
Query: 11  RKNPRGVLISPGPGAPQ---DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP 67
           R +P  ++ISPGPG P+   D G+SL  +  LG   P+ GVC+G Q IG AFG KI R  
Sbjct: 43  RIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKI-RRA 101
Query: 68  LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 127
             V HGK S +         L  G++  F A RYHSLV+++   P     ++A  ED  I
Sbjct: 102 RKVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVVDEVHRPLIVDAISA--EDNEI 159
Query: 128 MAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 164
           MA  H++Y  + GVQFHPES+ T+ G  I+ NF+  +
Sbjct: 160 MAIHHEEYP-IYGVQFHPESVGTSLGYKILYNFLNRV 195

>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens Length = 193

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 93/151 (61%), Gaps = 9/151 (5%)
Query: 17  VLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSS 76
           +++SPGPG P ++G   + +  L   +P+ G+C+G Q I EA+GG++ ++   ++HGK+S
Sbjct: 52  LMLSPGPGTPSEAGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAG-EILHGKAS 110
Query: 77  LVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYK 136
            + +D  GE G+ AG++NP    RYHSLV    + P+D L V A   + ++MA R  + +
Sbjct: 111 AIAHD--GE-GMFAGMANPLPVARYHSLV--GSNIPAD-LTVNARFGE-MVMAVRDDR-R 162
Query: 137 HLQGVQFHPESIITTEGKTIVRNFIKMIVRK 167
            + G QFHPESI+TT G  ++   +   + K
Sbjct: 163 RVCGFQFHPESILTTHGARLLEQTLAWALAK 193

>pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate Synthase From Salmonella Typhimurium Length = 192

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 10/156 (6%)
Query: 12  KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVM 71
           KNP  +++SPGPG P ++G   + +  L   +P+ G+C+G Q I EA+GG + ++   ++
Sbjct: 47  KNPV-LMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG-EIL 104
Query: 72  HGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAAR 131
           HGK++ + +D +    + AGL+NP    RYHSLV    + P+  L + A   +G++MA R
Sbjct: 105 HGKATSIEHDGQ---AMFAGLANPLPVARYHSLV--GSNVPA-GLTINAHF-NGMVMAVR 157
Query: 132 HKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 167
           H   + + G QFHPESI+TT+G  ++   +    +K
Sbjct: 158 HDADR-VCGFQFHPESILTTQGARLLEQTLAWAQQK 192

>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus Horikoshii Length = 189

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 12/153 (7%)
Query: 13  NPRGVLISPGPGAPQDSGISLQTVLELGP--TVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
           NP+G++ S GP   +++G + + VLE      VP+ G+C+G Q I + FGGK+ R     
Sbjct: 43  NPKGIIFSGGPSL-ENTG-NCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGRGE--- 97
Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
              + SLV  +   E  +  GL  P     + S + E +  P    ++ A +E   I A 
Sbjct: 98  -KAEYSLVEIEIIDEXEIFKGL--PKRLKVWESHMDEVKELPPK-FKILARSETXPIEAM 153
Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
           +H++   + GVQFHPE   T +G+ I+RNF K+
Sbjct: 154 KHEELP-IYGVQFHPEVAHTEKGEEILRNFAKL 185

>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase From Pyrococcus Horikoshii Ot3 Length = 209

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 12/153 (7%)
Query: 13  NPRGVLISPGPGAPQDSGISLQTVLELGP--TVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
           NP+G++ S GP   +++G + + VLE      VP+ G+C+G Q I + FGGK+ R     
Sbjct: 63  NPKGIIFSGGPSL-ENTG-NCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGRGE--- 117
Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
              + SLV  +   ED +  GL  P     + S + E +  P    ++ A +E   I A 
Sbjct: 118 -KAEYSLVEIEIIDEDEIFKGL--PKRLKVWESHMDEVKELPPK-FKILARSETCPIEAM 173
Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
           +H++   + GVQFHPE   T +G+ I+RNF K+
Sbjct: 174 KHEELP-IYGVQFHPEVAHTEKGEEILRNFAKL 205

>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And Pyrophosphate Length = 525

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 13  NPRGVLISPGPGA--PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
           NP G+++S GP +   ++S  + Q V E G  VP+FGVC G+Q +    GG +  S    
Sbjct: 50  NPSGIILSGGPESTTEENSPRAPQYVFEAG--VPVFGVCYGMQTMAMQLGGHVEASN--- 104
Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVI------EKESFPSDALEVTAWTED 124
              +      +   +  L+ G+ +  TA     L +      +  + PSD + V + TE 
Sbjct: 105 -EREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVAS-TES 162
Query: 125 G--LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 169
               IMA   K++    GVQFHPE   T +G  ++  F++ I + EA
Sbjct: 163 CPFAIMANEEKRF---YGVQFHPEVTHTRQGMRMLERFVRDICQCEA 206

>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus Thermophilus Length = 503

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 9/158 (5%)
Query: 6   LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVR 65
           L    +  P+ +++S GP +  D              +PL G+C G+Q + +  GG++ R
Sbjct: 35  LEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGMQLLAQELGGRVER 94
Query: 66  SPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG 125
           +     +GK+ L  +    E  L  GL         H   +   + P     V A TE+ 
Sbjct: 95  AGRA-EYGKALLTRH----EGPLFRGLEGEVQVWMSHQDAV---TAPPPGWRVVAETEEN 146
Query: 126 LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
            + AA         GVQFHPE   T +G  I+ NF+++
Sbjct: 147 PV-AAIASPDGRAYGVQFHPEVAHTPKGMQILENFLEL 183

>pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain Length = 218

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 13/149 (8%)
Query: 15  RGVLISPGPGA--PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMH 72
           R ++IS GP +   +D+      +  +G   P+ G+C G+Q + + FGG + +  +    
Sbjct: 69  RAIIISGGPNSVYAEDAPWFDPAIFTIGK--PVLGICYGMQMMNKVFGGTVHKKSVR--- 123
Query: 73  GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARH 132
            +  +          L  GL         H   ++K    +D  +V A +  G I+A   
Sbjct: 124 -EDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDK---VADGFKVVARS--GNIVAGIA 177
Query: 133 KKYKHLQGVQFHPESIITTEGKTIVRNFI 161
            + K L G QFHPE  +T  GK I++NF+
Sbjct: 178 NESKKLYGAQFHPEVGLTENGKVILKNFL 206

>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp Length = 697

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 13/149 (8%)
Query: 15  RGVLISPGPGA--PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMH 72
           R ++IS GP +   +D+      +  +G   P+ G+C G+Q + + FGG + +  +    
Sbjct: 74  RAIIISGGPNSVYAEDAPWFDPAIFTIGK--PVLGICYGMQMMNKVFGGTVHKKSVR--- 128
Query: 73  GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARH 132
            +  +          L  GL         H   ++K    +D  +V A +  G I+A   
Sbjct: 129 -EDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDK---VADGFKVVARS--GNIVAGIA 182
Query: 133 KKYKHLQGVQFHPESIITTEGKTIVRNFI 161
            + K L G QFHPE  +T  GK I++NF+
Sbjct: 183 NESKKLYGAQFHPEVGLTENGKVILKNFL 211

>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point Mutant Of Carbamoyl Phosphate Synthetase Length = 382

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 17/158 (10%)
Query: 11  RKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP 67
           + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+C+G Q +  A G K V+  
Sbjct: 230 KMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGICLGHQLLALASGAKTVKMK 287
Query: 68  LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 127
            G  HG +  V   EK    + A         + H   +++ + P++ L VT  +     
Sbjct: 288 FG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVTHKSLFDGT 336
Query: 128 MAARHKKYKHLQGVQFHPE-SIITTEGKTIVRNFIKMI 164
           +   H+  K     Q HPE S    +   +  +FI++I
Sbjct: 337 LQGIHRTDKPAFSFQGHPEASPFPHDAAPLFDHFIELI 374

>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus Thermophilus In Complex With Xmp Length = 503

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 9/158 (5%)
Query: 6   LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVR 65
           L    +  P+ +++S GP +  D              +PL G+C G Q + +  GG++ R
Sbjct: 35  LEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGXQLLAQELGGRVER 94
Query: 66  SPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG 125
           +     +GK+ L  +    E  L  GL         H   +   + P     V A TE+ 
Sbjct: 95  AGRA-EYGKALLTRH----EGPLFRGLEGEVQVWXSHQDAV---TAPPPGWRVVAETEEN 146
Query: 126 LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
            + A      +   GVQFHPE   T +G  I+ NF+++
Sbjct: 147 PVAAIASPDGRAY-GVQFHPEVAHTPKGXQILENFLEL 183

>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate Synthetase Small Subunit Mutant C248d Complexed With Uridine 5'-Monophosphate Length = 382

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 11  RKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP 67
           + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+C+G Q +  A G K V+  
Sbjct: 230 KMNPDGIFLSNGPGDPAPDDYAITAIQKFLET--DIPVFGICLGHQLLALASGAKTVKMK 287
Query: 68  LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 127
            G  HG +  V   EK    + A         + H   +++ + P++ L VT  +     
Sbjct: 288 FG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVTHKSLFDGT 336
Query: 128 MAARHKKYKHLQGVQFHPES 147
           +   H+  K     Q HPE+
Sbjct: 337 LQGIHRTDKPAFSFQGHPEA 356

>pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli Length = 382

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 11  RKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP 67
           + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+C+G Q +  A G K V+  
Sbjct: 230 KMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGICLGHQLLALASGAKTVKMK 287
Query: 68  LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 127
            G  HG +  V   EK    + A         + H   +++ + P++ L VT  +     
Sbjct: 288 FG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVTHKSLFDGT 336
Query: 128 MAARHKKYKHLQGVQFHPES 147
           +   H+  K     Q HPE+
Sbjct: 337 LQGIHRTDKPAFSFQGHPEA 356

>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small Subunit Mutation C269s Length = 382

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 11  RKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP 67
           + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+ +G Q +  A G K V+  
Sbjct: 230 KMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGISLGHQLLALASGAKTVKMK 287
Query: 68  LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 127
            G  HG +  V   EK    + A         + H   +++ + P++ L VT  +     
Sbjct: 288 FG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVTHKSLFDGT 336
Query: 128 MAARHKKYKHLQGVQFHPES 147
           +   H+  K     Q HPE+
Sbjct: 337 LQGIHRTDKPAFSFQGHPEA 356

>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase Complexed At Cys269 In The Small Subunit With The Tetrahedral Mimic L-glutamate Gamma-semialdehyde Length = 382

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 11  RKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP 67
           + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+ +G Q +  A G K V+  
Sbjct: 230 KMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGIXLGHQLLALASGAKTVKMK 287
Query: 68  LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 127
            G  HG +  V   EK    + A         + H   +++ + P++ L VT  +     
Sbjct: 288 FG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVTHKSLFDGT 336
Query: 128 MAARHKKYKHLQGVQFHPES 147
           +   H+  K     Q HPE+
Sbjct: 337 LQGIHRTDKPAFSFQGHPEA 356

>pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of Glutamine Hydrolysis Length = 379

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 11  RKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP 67
           + NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+ +G Q +  A G K V+  
Sbjct: 229 KMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGIXLGHQLLALASGAKTVKMK 286
Query: 68  LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 127
            G  HG +  V   EK    + A         + H   +++ + P++ L VT  +     
Sbjct: 287 FG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVTHKSLFDGT 335
Query: 128 MAARHKKYKHLQGVQFHPES 147
           +   H+  K     Q +PE+
Sbjct: 336 LQGIHRTDKPAFSFQGNPEA 355

>pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45 A Resolution Length = 212

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 8/131 (6%)
Query: 44  PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 103
           P+ G+C+G Q I   FG  +V++           V + E     +  GL +  T    H+
Sbjct: 87  PILGICVGAQFIALHFGASVVKAKHPEFGKTKVSVXHSEN----IFGGLPSEITVWENHN 142
Query: 104 LVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
              E  + P D   + A +    +    HK  + +   QFHPE   T  G+ I RNFI +
Sbjct: 143 --DEIINLPDD-FTLAASSATCQVQGFYHKT-RPIYATQFHPEVEHTQYGRDIFRNFIGI 198
Query: 164 IVRKEAADSQN 174
                    +N
Sbjct: 199 CASYREIQKEN 209

>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella Burnetii Length = 527

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 10/159 (6%)
Query: 13  NPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
           NP G+++S GP     S    +   + E+G   P+ G+C G+Q +    GGK+ R+    
Sbjct: 53  NPHGIILSGGPETVTLSHTLRAPAFIFEIG--CPVLGICYGMQTMAYQLGGKVNRTAKAE 110
Query: 71  MHGKSSLVYYDEKGEDGLLAGLS---NPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 127
                  V       DG+   +S    P          I  E  P    E TA T++  +
Sbjct: 111 FGHAQLRVLNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSELPP--GFEATACTDNSPL 168
Query: 128 MAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 166
            A    K +   G+QFHPE   T +G  I+ +F+  I +
Sbjct: 169 AAMADFKRRFF-GLQFHPEVTHTPQGHRILAHFVIHICQ 206

>pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From Plasmodium Falciparum Length = 556

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 42/189 (22%)
Query: 13  NPRGVLISPGP------GAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 66
           N +GV++S GP      G+P       +  LE    +P+FG+C G+Q I     G++ +S
Sbjct: 50  NIKGVILSGGPYSVTEAGSPHLKKEVFEYFLE--KKIPIFGICYGMQEIAVQMNGEVKKS 107
Query: 67  P--------LGVMHGK--SSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDAL 116
                    + ++     +++ Y    G+      L + +        +   E+  SD  
Sbjct: 108 KTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLF--ENIKSDI- 164
Query: 117 EVTAW-------------------TEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIV 157
             T W                   +E+ LI +  +K+Y ++ GVQ+HPE   + +G+ + 
Sbjct: 165 -TTVWMNHNDEVTKIPENFYLVSSSENCLICSIYNKEY-NIYGVQYHPEVYESLDGELMF 222
Query: 158 RNFIKMIVR 166
            NF   I +
Sbjct: 223 YNFAYNICK 231

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	5e-78
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	3e-76
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	1e-34
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	2e-25
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	4e-18
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	4e-18
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	6e-18
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	7e-18
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	1e-17
2a9v_A	212	GMP synthase; structural genomics, joint center fo	9e-17
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	4e-16
3uow_A	556	GMP synthetase; structural genomics consortium, SG	7e-15
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	1e-13
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	5e-11
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	6e-11
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	2e-10
3m3p_A	250	Glutamine amido transferase; structural genomics,	3e-10
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	1e-09
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	2e-09
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	2e-08
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	2e-07
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	3e-06
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	3e-05

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 Length = 195

 Score =  229 bits (587), Expect = 5e-78
 Identities = 65/157 (41%), Positives = 91/157 (57%), Gaps = 7/157 (4%)

Query: 11  RKNPRGVLISPGPGAP---QDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP 67
           R +P  ++ISPGPG P   +D G+SL  +  LG   P+ GVC+G Q IG AFG KI R+ 
Sbjct: 43  RIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRAR 102

Query: 68  LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 127
             V HGK S +         L  G++  F A RYHSLV+++   P   ++  +  ED  I
Sbjct: 103 K-VFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVVDEVHRP-LIVDAISA-EDNEI 159

Query: 128 MAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 164
           MA  H++Y  + GVQFHPES+ T+ G  I+ NF+  +
Sbjct: 160 MAIHHEEYP-IYGVQFHPESVGTSLGYKILYNFLNRV 195

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* Length = 192

 Score =  225 bits (575), Expect = 3e-76
 Identities = 53/157 (33%), Positives = 90/157 (57%), Gaps = 9/157 (5%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
                 +++SPGPG P ++G   + +  L   +P+ G+C+G Q I EA+GG + ++   +
Sbjct: 45  TMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAGE-I 103

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
           +HGK++ + +D +    + AGL+NP    RYHSLV    + P   L + A   +G++MA 
Sbjct: 104 LHGKATSIEHDGQ---AMFAGLANPLPVARYHSLVG--SNVP-AGLTINAHF-NGMVMAV 156

Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 167
           RH   + + G QFHPESI+TT+G  ++   +    +K
Sbjct: 157 RHDADR-VCGFQFHPESILTTQGARLLEQTLAWAQQK 192

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A* Length = 645

 Score =  126 bits (319), Expect = 1e-34
 Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 26/174 (14%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLE------LGPTVPLFGVCMGLQCIGEAFGGKIV 64
                 V++ PGPG P D+G      L       +    P   VC+  Q +    G  +V
Sbjct: 484 LARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLV 543

Query: 65  RSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSD-----ALEVT 119
           R  +    G    +                    G Y++ V +      D      + ++
Sbjct: 544 RREV-PNQGIQVEI-----------DLFGQRERVGFYNTYVAQTVRDEMDVDGVGTVAIS 591

Query: 120 AWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAADSQ 173
                G + A R         +QFH ES++T +G  I+   I   +R+E   + 
Sbjct: 592 RDPRTGEVHALRGP---TFSSMQFHAESVLTVDGPRILGEAITHAIRREKRMTA 642

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1 Length = 315

 Score = 98.2 bits (244), Expect = 2e-25
 Identities = 26/181 (14%), Positives = 50/181 (27%), Gaps = 29/181 (16%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTV----------LELGPTVPLFGVCMGLQCIGEAFGGK 62
                ++ PG           +             + G   P++G C+G + +     G+
Sbjct: 85  KSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGE 144

Query: 63  IVRSPLGVMHGKSSLVYYDEKGED---------GLLAGLSNPFTAGRYHSLVIEKESFP- 112
            + +        +  + +                LL  L+       +H   +  ++F  
Sbjct: 145 CLLT-ATDTVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTM 203

Query: 113 ----SDALEVTAWTEDGL---IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 165
                    V     DG    I      KY  + GVQ+HPE            +     V
Sbjct: 204 NEKLKKFFNVLTTNTDGKIEFISTMEGYKYP-VYGVQWHPEKAPYEWKNLDGISHAPNAV 262

Query: 166 R 166
           +
Sbjct: 263 K 263

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Length = 525

 Score = 79.4 bits (197), Expect = 4e-18
 Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 32/170 (18%)

Query: 11  RKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIV 64
             NP G+++S GP       +P+      Q V E G  VP+FGVC G+Q +    GG + 
Sbjct: 48  DFNPSGIILSGGPESTTEENSPRAP----QYVFEAG--VPVFGVCYGMQTMAMQLGGHVE 101

Query: 65  RSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRY--------HSLVIEK--ESFPSD 114
            S      G + +       +  L+ G+ +  TA           H   +      F   
Sbjct: 102 ASNER-EFGYAQVEV---VNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDF--- 154

Query: 115 ALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 164
                A TE        +++ K   GVQFHPE   T +G  ++  F++ I
Sbjct: 155 --ITVASTESCPFAIMANEE-KRFYGVQFHPEVTHTRQGMRMLERFVRDI 201

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Length = 503

 Score = 79.4 bits (197), Expect = 4e-18
 Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 25/160 (15%)

Query: 11  RKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIV 64
           +  P+ +++S GP       AP+        +   G  +PL G+C G+Q + +  GG++ 
Sbjct: 40  KHRPQALILSGGPRSVFDPDAPRPD----PRLFSSG--LPLLGICYGMQLLAQELGGRVE 93

Query: 65  RSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEK--ESFPSDALEVTAWT 122
           R+     +GK+ L     + E  L  GL         H   +      +      V A T
Sbjct: 94  RAGRA-EYGKALL----TRHEGPLFRGLEGEVQVWMSHQDAVTAPPPGW-----RVVAET 143

Query: 123 EDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 162
           E+  + A          GVQFHPE   T +G  I+ NF++
Sbjct: 144 EENPVAAIASPD-GRAYGVQFHPEVAHTPKGMQILENFLE 182

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Length = 697

 Score = 79.2 bits (196), Expect = 6e-18
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 23/160 (14%)

Query: 12  KNPRGVLISPGP------GAPQ-DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIV 64
           +  R ++IS GP       AP  D  I       +G   P+ G+C G+Q + + FGG + 
Sbjct: 71  QGFRAIIISGGPNSVYAEDAPWFDPAI-----FTIG--KPVLGICYGMQMMNKVFGGTVH 123

Query: 65  RSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED 124
           +  +    G  ++          L  GL         H   ++K    +D  +V A + +
Sbjct: 124 KKSVR-EDGVFNISV---DNTCSLFRGLQKEEVVLLTHGDSVDK---VADGFKVVARSGN 176

Query: 125 GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 164
             I+A    + K L G QFHPE  +T  GK I++NF+  I
Sbjct: 177 --IVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDI 214

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Length = 527

 Score = 78.7 bits (195), Expect = 7e-18
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 32/170 (18%)

Query: 11  RKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIV 64
             NP G+++S GP         +        + E+G   P+ G+C G+Q +    GGK+ 
Sbjct: 51  DFNPHGIILSGGPETVTLSHTLRAP----AFIFEIG--CPVLGICYGMQTMAYQLGGKVN 104

Query: 65  RSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRY--------HSLVIEK--ESFPSD 114
           R+      G + L          L  G+ +  +            H  ++ +    F   
Sbjct: 105 RTAKA-EFGHAQLRV---LNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSELPPGF--- 157

Query: 115 ALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 164
             E TA T++  + A    K +   G+QFHPE   T +G  I+ +F+  I
Sbjct: 158 --EATACTDNSPLAAMADFK-RRFFGLQFHPEVTHTPQGHRILAHFVIHI 204

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A Length = 189

 Score = 75.0 bits (185), Expect = 1e-17
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 20/157 (12%)

Query: 12  KNPRGVLISPGP------GAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVR 65
            NP+G++ S GP         +      +   E    VP+ G+C+G Q I + FGGK+ R
Sbjct: 42  MNPKGIIFSGGPSLENTGNCEKVL----EHYDEFN--VPILGICLGHQLIAKFFGGKVGR 95

Query: 66  SPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG 125
                 +    +       E  +  GL         H   +++        ++ A +E  
Sbjct: 96  GEKA-EYSLVEIEI---IDEXEIFKGLPKRLKVWESHMDEVKE---LPPKFKILARSETC 148

Query: 126 LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 162
            I A +H++   + GVQFHPE   T +G+ I+RNF K
Sbjct: 149 PIEAMKHEE-LPIYGVQFHPEVAHTEKGEEILRNFAK 184

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 Length = 212

 Score = 73.3 bits (181), Expect = 9e-17
 Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 32/164 (19%)

Query: 12  KNPRGVLISPGP--------GAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKI 63
               G+++S G                   + + +     P+ G+C+G Q I   FG  +
Sbjct: 53  DGLDGLVLSGGAPNIDEELDKLGSVG----KYIDDHN--YPILGICVGAQFIALHFGASV 106

Query: 64  VRSPLGVMH---GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEK--ESFPSDALEV 118
           V++     H   GK+ +        + +  GL +  T    H+  I    + F      +
Sbjct: 107 VKAK----HPEFGKTKV---SVMHSENIFGGLPSEITVWENHNDEIINLPDDF-----TL 154

Query: 119 TAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 162
            A +    +    HK  + +   QFHPE   T  G+ I RNFI 
Sbjct: 155 AASSATCQVQGFYHKT-RPIYATQFHPEVEHTQYGRDIFRNFIG 197

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} Length = 218

 Score = 71.4 bits (176), Expect = 4e-16
 Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 25/162 (15%)

Query: 11  RKNPRGVLISPGP------GAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIV 64
            +  R ++IS GP       AP         +  +G   P+ G+C G+Q + + FGG + 
Sbjct: 65  EQGFRAIIISGGPNSVYAEDAPWFD----PAIFTIG--KPVLGICYGMQMMNKVFGGTVH 118

Query: 65  RSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEK--ESFPSDALEVTAWT 122
           +  +    G  ++          L  GL         H   ++K  + F     +V A +
Sbjct: 119 KKSVR-EDGVFNISV---DNTCSLFRGLQKEEVVLLTHGDSVDKVADGF-----KVVARS 169

Query: 123 EDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 164
            +  I+A    + K L G QFHPE  +T  GK I++NF+  I
Sbjct: 170 GN--IVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLYDI 209

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Length = 556

 Score = 70.3 bits (173), Expect = 7e-15
 Identities = 36/188 (19%), Positives = 71/188 (37%), Gaps = 40/188 (21%)

Query: 11  RKNPRGVLISPGP------GAPQDSGISLQTVLELGPT--VPLFGVCMGLQCIGEAFGGK 62
             N +GV++S GP      G+P       + V E      +P+FG+C G+Q I     G+
Sbjct: 48  DMNIKGVILSGGPYSVTEAGSPHLK----KEVFEYFLEKKIPIFGICYGMQEIAVQMNGE 103

Query: 63  IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDAL------ 116
           + +S     +G + +        + +    +   ++         K    +  L      
Sbjct: 104 VKKSKTS-EYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKS 162

Query: 117 --------------------EVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTI 156
                                + + +E+ LI +  +K+  ++ GVQ+HPE   + +G+ +
Sbjct: 163 DITTVWMNHNDEVTKIPENFYLVSSSENCLICSIYNKE-YNIYGVQYHPEVYESLDGELM 221

Query: 157 VRNFIKMI 164
             NF   I
Sbjct: 222 FYNFAYNI 229

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1 Length = 239

 Score = 65.6 bits (160), Expect = 1e-13
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 10/104 (9%)

Query: 43  VPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYH 102
           +P  G+C+G Q + +  G  + R   G   G   +   ++  ++       +     ++H
Sbjct: 94  IPFLGICLGSQMLAKVLGASVYRGKNGEEIGWYFV---EKVSDNKFFREFPDRLRVFQWH 150

Query: 103 SLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPE 146
               +    P  A      +E           Y    G+QFH E
Sbjct: 151 GDTFDL---PRRA-TRVFTSEKYENQGFV---YGKAVGLQFHIE 187

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans} Length = 236

 Score = 58.3 bits (141), Expect = 5e-11
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 43  VPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYH 102
             + GVC+G Q +G A+G   + SP     G   +   +    D  L+  S+    G +H
Sbjct: 85  KIIVGVCLGAQLMGVAYGADYLHSP-KKEIGNYLISLTEAGKMDSYLSDFSDDLLVGHWH 143

Query: 103 SLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPE 146
             +      P  A +V A ++       +          Q H E
Sbjct: 144 GDMPG---LPDKA-QVLAISQGCPRQIIKFG--PKQYAFQCHLE 181

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} Length = 191

 Score = 57.2 bits (138), Expect = 6e-11
 Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 22/159 (13%)

Query: 17  VLISPGPGAP------QDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPL 68
            LI PG  +       ++ GI   ++  +E G ++ LFG C G   + +   G   +  L
Sbjct: 42  ALIVPGGESTTIGKLAREYGIEDEVRKRVEEG-SLALFGTCAGAIWLAKEIVGYPEQPRL 100

Query: 69  GVMHGKSSLVYYDEKG---EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG 125
           GV+        +  +    E+ L       F      + V  +     + +EV A     
Sbjct: 101 GVLEAWVERNAFGRQVESFEEDLEVEGLGSFHGVFIRAPVFRR---LGEGVEVLAR-LGD 156

Query: 126 LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 164
           L +  R      +    FHPE    TE   + R F+++ 
Sbjct: 157 LPVLVRQ---GKVLASSFHPEL---TEDPRLHRYFLELA 189

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1 Length = 219

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 15/133 (11%)

Query: 44  PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE----DGLLAGLSNPFTAG 99
           P+FG C GL  + +   G      LG+M        +  + E    +  + G+ + F   
Sbjct: 96  PMFGTCAGLILLAKRIVGYDEP-HLGLMDITVERNSFGRQRESFEAELSIKGVGDGFVGV 154

Query: 100 RYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRN 159
              +  I +     D ++V A T +  I+AAR        G  FHPE    T+   +++ 
Sbjct: 155 FIRAPHIVE---AGDGVDVLA-TYNDRIVAARQG---QFLGCSFHPEL---TDDHRLMQY 204

Query: 160 FIKMIVRKEAADS 172
           F+ M+   + A S
Sbjct: 205 FLNMVKEAKMASS 217

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* Length = 250

 Score = 56.4 bits (136), Expect = 3e-10
 Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 14/107 (13%)

Query: 43  VPLFGVCMGLQCIGEAFGGKIVRSP---LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAG 99
           VP+ G C+G Q + +A GG++  SP   +G +       +     +     G  +     
Sbjct: 83  VPVIGHCLGGQLLAKAMGGEVTDSPHAEIGWVR-----AWPQHVPQALEWLGTWDELELF 137

Query: 100 RYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPE 146
            +H         P  A      +E     A          G Q H E
Sbjct: 138 EWHYQTFSI---PPGA-VHILRSEHCANQAYVLD--DLHIGFQCHIE 178

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} Length = 254

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 16/133 (12%)

Query: 43  VPLFGVCMGLQCIGEAFGGKIVR-----SPLGVMHGKSSLVYYDEKG----EDGLLAGLS 93
            P+F +C G+Q +  A GG + +         + H +                  LA   
Sbjct: 109 KPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHH 168

Query: 94  NPFTAGR-YHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKH-LQGVQFHPESIITT 151
                    H   I+K    + + +VTA T DG+I A           GVQ+HPE +  T
Sbjct: 169 PNKKLVNSLHHQFIKK---LAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQT 225

Query: 152 --EGKTIVRNFIK 162
             E + + +  + 
Sbjct: 226 DPESEQLFQALVD 238

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B* Length = 196

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 15/125 (12%)

Query: 44  PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK----GEDGLLAGLSNPFTAG 99
           P+FG C GL  + +   G      LG+++       +  +      D  + GL  PFT  
Sbjct: 74  PMFGTCAGLIILAKEIAGSDNP-HLGLLNVVVERNSFGRQVDSFEADLTIKGLDEPFTGV 132

Query: 100 RYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRN 159
              +  I +     + +EV +   +G I+AA+        G  FHPE    TE   + + 
Sbjct: 133 FIRAPHILE---AGENVEVLS-EHNGRIVAAKQG---QFLGCSFHPEL---TEDHRVTQL 182

Query: 160 FIKMI 164
           F++M+
Sbjct: 183 FVEMV 187

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii} Length = 186

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 23/132 (17%)

Query: 44  PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYY----DEKGEDGLLAGLSNPFTAG 99
           P+ G C G+  + +  G    +  L +M        Y    D   ++     L       
Sbjct: 70  PILGTCAGMVLLSKGTGIN--QILLELMDITVKRNAYGRQVDSFEKEIEFKDLGK----V 123

Query: 100 RY----HSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKT 155
                   +V +  S   D +EV A  +   I+  +         + FHPE  ++ +G  
Sbjct: 124 YGVFIRAPVVDKILS---DDVEVIA-RDGDKIVGVKQG---KYMALSFHPE--LSEDGYK 174

Query: 156 IVRNFIKMIVRK 167
           + + F++  V+K
Sbjct: 175 VYKYFVENCVKK 186

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B* Length = 379

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 40/150 (26%)

Query: 13  NPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG 69
           NP G+ +S GPG  AP D  I+ +Q  LE    +P+FG+C+G Q +  A G K V+   G
Sbjct: 231 NPDGIFLSNGPGDPAPCDYAITAIQKFLETD--IPVFGICLGHQLLALASGAKTVKMKFG 288

Query: 70  -------VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT 122
                  V   + ++V                  TA + H   +++ + P++ L VT   
Sbjct: 289 HHGGNHPVKDVEKNVVM----------------ITA-QNHGFAVDEATLPAN-LRVT--- 327

Query: 123 E-----DGLIMAARHKKYKHLQGVQFHPES 147
                 DG +              Q +PE+
Sbjct: 328 -HKSLFDGTLQGIHRTDKP-AFSFQGNPEA 355

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima} Length = 208

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 14/125 (11%)

Query: 44  PLFGVCMGLQCIGEAFGGKIVRS----PLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAG 99
           P+F  C G+  + +              + V            +    + A   +PF A 
Sbjct: 93  PVFATCAGVILLAKRIKNYSQEKLGVLDITVERNAYGRQVESFETFVEIPAVGKDPFRAI 152

Query: 100 RYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRN 159
              +  I +       +E+ A T D   +  +     ++    FHPE    T+   + R 
Sbjct: 153 FIRAPRIVE---TGKNVEILA-TYDYDPVLVKEG---NILACTFHPEL---TDDLRLHRY 202

Query: 160 FIKMI 164
           F++M+
Sbjct: 203 FLEMV 207

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G Length = 227

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 26/175 (14%), Positives = 47/175 (26%), Gaps = 36/175 (20%)

Query: 18  LISPGPGAPQDSGISLQTVLEL---------GPTVPLFGVCMGLQCIGEAFGGKIVRS-- 66
           L+ PG  +             L             P++G C G   + +      + S  
Sbjct: 47  LVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNF 106

Query: 67  ----PLGVMHGKSSLVYYDEKGE--------DGLLAGLSNPFTAGRYHSLVIEKESFPSD 114
                 G +       +Y  + +            +      TA    +  I +    SD
Sbjct: 107 GNKFSFGGLDITICRNFYGSQNDSFICSLNIISDSSAFKKDLTAACIRAPYIRE--ILSD 164

Query: 115 ALEVTAWTED-----GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 164
            ++V A          +I A       +  G  FHPE           + F + +
Sbjct: 165 EVKVLATFSHESYGPNIIAAVEQN---NCLGTVFHPEL---LPHTAFQQYFYEKV 213

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	100.0
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	100.0
2a9v_A	212	GMP synthase; structural genomics, joint center fo	100.0
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	100.0
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	100.0
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	100.0
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	99.98
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	99.98
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	99.98
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	99.98
3uow_A	556	GMP synthetase; structural genomics consortium, SG	99.97
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	99.97
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	99.97
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	99.97
3m3p_A	250	Glutamine amido transferase; structural genomics,	99.96
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	99.96
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	99.96
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	99.95
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	99.95
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	99.95
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	99.95
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	99.95
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	99.94
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	99.94
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	99.94
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	99.92
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	99.92
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	99.92
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	99.91
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	99.91
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	99.9
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	99.88
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	99.87
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	99.86
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	99.85
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	99.2
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	97.72
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	97.69
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	97.61
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	97.6
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	97.48
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	97.47
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	97.36
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	97.25
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	97.21
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	97.17
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	97.15
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	97.06
3gra_A	202	Transcriptional regulator, ARAC family; transcript	97.02
2fex_A	188	Conserved hypothetical protein; structural genomic	96.99
1u9c_A	224	APC35852; structural genomics, protein structure i	96.93
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	96.89
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	96.7
3er6_A	209	Putative transcriptional regulator protein; struct	96.67
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	96.61
3n7t_A	247	Macrophage binding protein; seattle structural gen	96.58
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	96.38
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	96.24
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	96.22
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	96.18
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	96.02
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	96.0
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	95.96
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	95.91
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	95.89
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	95.86
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	95.76
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	95.1
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	94.74
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	94.64
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	93.28
2r47_A	157	Uncharacterized protein MTH_862; unknown function,	89.82
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	86.4
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	82.96
1ehs_A	48	STB, heat-stable enterotoxin B; disulfide; NMR {Es	80.75

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=100.00  E-value=7.9e-36  Score=219.93  Aligned_cols=150  Identities=43%  Similarity=0.707  Sum_probs=124.5

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcc--hh-HHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEecc
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSG--IS-LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE   82 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~--~~-~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~   82 (174)
                      .+++...++|||||+||++++.+..  .+ .+.+++...++|+||||+|||+|+.++||++.+.+. ..+|.+..+....
T Consensus        38 ~~~~~~~~~dglil~gG~~~~~~~~~~~~~~~~i~~~~~~~PvLGIC~G~QlL~~~~gg~v~~~~~-~~~g~~~~v~~~~  116 (195)
T 1qdl_B           38 IKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARK-VFHGKISNIILVN  116 (195)
T ss_dssp             HHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEEETHHHHHHHHHTTCEEEEEEE-EEEEEEEEEEECC
T ss_pred             HHHHhhCCCCEEEECCCCCChhhhhhhhHHHHHHHHhcCCCcEEEEehHHHHHHHHhCCEEeccCC-CcCCCceEEEECC
Confidence            3466655799999999999988742  13 355555677899999999999999999999988763 4567666555542


Q ss_pred             CCCC--CcccCCCCceeecccccceecccCCCCCCcEEEEEc-CCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHH
Q 030626           83 KGED--GLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRN  159 (174)
Q Consensus        83 ~~~~--~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~  159 (174)
                        .+  ++|+++++.+.++++|++.+..   ++++++++|++ +++.++|++.++++ ++|+|||||+..++.+.+||++
T Consensus       117 --~~~~~l~~~~~~~~~v~~~H~~~v~~---l~~~~~vla~s~~~g~i~a~~~~~~~-~~gvQfHPE~~~~~~g~~l~~~  190 (195)
T 1qdl_B          117 --NSPLSLYYGIAKEFKATRYHSLVVDE---VHRPLIVDAISAEDNEIMAIHHEEYP-IYGVQFHPESVGTSLGYKILYN  190 (195)
T ss_dssp             --SSCCSTTTTCCSEEEEEEEEEEEEEC---CCTTEEEEEEESSSCCEEEEEESSSS-EEEESSBTTSTTCTTHHHHHHH
T ss_pred             --CCHhHHHhcCCCceEEeccccchhhh---CCCCcEEEEEECCCCcEEEEEeCCCC-EEEEecCCCCCCCccHHHHHHH
Confidence              44  8999998889999999999975   67899999999 89999999998765 9999999999877889999999


Q ss_pred             HHH
Q 030626          160 FIK  162 (174)
Q Consensus       160 f~~  162 (174)
                      |++
T Consensus       191 f~~  193 (195)
T 1qdl_B          191 FLN  193 (195)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            997

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=100.00  E-value=1.1e-33  Score=207.37  Aligned_cols=149  Identities=28%  Similarity=0.471  Sum_probs=120.0

Q ss_pred             HHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHc-CCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626            7 VSYCRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus         7 ~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~-~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      +++...++|||||+||+ ++.+.....+.+++. ..++|+||||+|+|+|+.++||++.+.+. ..+|...... .  ..
T Consensus        37 ~~~~~~~~dglil~Gg~-~~~~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~~~gg~v~~~~~-~~~G~~~~~~-~--~~  111 (189)
T 1wl8_A           37 EEIKAMNPKGIIFSGGP-SLENTGNCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGRGEK-AEYSLVEIEI-I--DE  111 (189)
T ss_dssp             HHHHHTCCSEEEECCCS-CTTCCTTHHHHHHTGGGTCSCEEEETHHHHHHHHHHTCEEEECSC-CSCEEEEEEE-S--CC
T ss_pred             HHhcccCCCEEEECCCC-ChhhhhhHHHHHHHHhhCCCeEEEEcHHHHHHHHHhCCceecCCC-cccCceeEEE-e--cC
Confidence            45555579999999999 776655445666653 78899999999999999999999998753 2355443322 2  36


Q ss_pred             CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHH
Q 030626           86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI  164 (174)
Q Consensus        86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~  164 (174)
                      +++|.++++.+.++++|++.+..   ++++++++|+++++.+++++.++++ ++|+|||||+..++++.++|++|++.|
T Consensus       112 ~~l~~~~~~~~~~~~~h~~~v~~---l~~~~~vla~s~~g~i~a~~~~~~~-~~gvQfHPE~~~~~~g~~l~~~f~~~~  186 (189)
T 1wl8_A          112 XEIFKGLPKRLKVWESHMDEVKE---LPPKFKILARSETCPIEAMKHEELP-IYGVQFHPEVAHTEKGEEILRNFAKLC  186 (189)
T ss_dssp             --CCTTSCSEEEEEECCSEEEEE---CCTTEEEEEEESSCSCSEEEESSSC-EEEESSCTTSTTSTTHHHHHHHHHHHH
T ss_pred             chHHhCCCCceEEEEEeeeehhh---CCCCcEEEEEcCCCCEEEEEeCCce-EEEEecCCCcCCCcchHHHHHHHHHHH
Confidence            78898888888899999988865   6789999999999999999998765 999999999977788999999999876

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=100.00  E-value=5.3e-34  Score=212.69  Aligned_cols=149  Identities=25%  Similarity=0.377  Sum_probs=120.5

Q ss_pred             CCCEEEeCCC-CCCCCCcch---hHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCCc
Q 030626           13 NPRGVLISPG-PGAPQDSGI---SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGL   88 (174)
Q Consensus        13 ~~dgiii~GG-~~~~~~~~~---~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l   88 (174)
                      ++|||||+|| ++++++...   +.+.+  ...++|+||||+|||+|+.++||++.+.+. ..+|.. .+...  ..+++
T Consensus        54 ~~DglIl~GG~p~~~~~~~~~~~l~~~~--~~~~~PiLGIC~G~Qll~~~lGg~v~~~~~-~~~G~~-~v~~~--~~~~l  127 (212)
T 2a9v_A           54 GLDGLVLSGGAPNIDEELDKLGSVGKYI--DDHNYPILGICVGAQFIALHFGASVVKAKH-PEFGKT-KVSVM--HSENI  127 (212)
T ss_dssp             TCSEEEEEEECSCGGGTGGGHHHHHHHH--HHCCSCEEEETHHHHHHHHHTTCEEEEEEE-EEEEEE-EEEES--CCCGG
T ss_pred             CCCEEEECCCCCCCCcccccchhHHHHH--HhCCCCEEEEChHHHHHHHHhCCEEEcCCC-cccCce-eeEEC--CCChh
Confidence            4899999999 898877522   22333  346799999999999999999999998752 234433 33333  35689


Q ss_pred             ccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHHHHH
Q 030626           89 LAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKE  168 (174)
Q Consensus        89 ~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~~  168 (174)
                      ++++++.+.++++|++.+..   ++++++++|+++++.++|++.++++ ++|+|||||+..++.+.+||++|++.+.+..
T Consensus       128 ~~~~~~~~~v~~~H~~~v~~---l~~~~~vlA~s~d~~i~ai~~~~~~-i~gvQfHPE~~~~~~g~~l~~~F~~~~~~~~  203 (212)
T 2a9v_A          128 FGGLPSEITVWENHNDEIIN---LPDDFTLAASSATCQVQGFYHKTRP-IYATQFHPEVEHTQYGRDIFRNFIGICASYR  203 (212)
T ss_dssp             GTTCCSEEEEEEEEEEEEES---CCTTEEEEEECSSCSCSEEEESSSS-EEEESSCTTSTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCceEEEeEhhhhHhh---CCCCcEEEEEeCCCCEEEEEECCCC-EEEEEeCCCCCCCccHHHHHHHHHHHHHHhh
Confidence            99988888999999999976   6789999999999999999998655 9999999999877889999999999887765


Q ss_pred             Hhh
Q 030626          169 AAD  171 (174)
Q Consensus       169 ~~~  171 (174)
                      .+.
T Consensus       204 ~~~  206 (212)
T 2a9v_A          204 EIQ  206 (212)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            554

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=100.00  E-value=2e-33  Score=206.63  Aligned_cols=144  Identities=35%  Similarity=0.676  Sum_probs=112.1

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCCcccCC
Q 030626           13 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGL   92 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   92 (174)
                      +.+++||+||++++.+.+...+.++....++|+||||+|||+|+.++||++.+.. ...+|.......   ..+++|+++
T Consensus        47 ~~~~iil~gGpg~~~~~~~~~~l~~~~~~~~PilGIC~G~Qll~~~~Gg~v~~~~-~~~~g~~~~~~~---~~~~l~~~~  122 (192)
T 1i1q_B           47 KNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG-EILHGKATSIEH---DGQAMFAGL  122 (192)
T ss_dssp             SSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCEEEETHHHHHHHHHTSCCCCC----CCSSEEEEEEE---CCCGGGTTS
T ss_pred             cCCeEEECCCCcCchhCchHHHHHHHHhcCCCEEEECcChHHHHHHhCCEEEeCC-CcEecceeEEec---CCChHHhcC
Confidence            4567999999999887655444555566789999999999999999999998764 233554433321   356899999


Q ss_pred             CCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626           93 SNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV  165 (174)
Q Consensus        93 ~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~  165 (174)
                      ++.+.++++|++.+..   ++++++++|.+ ++.++++++.+++ ++|+|||||+..++.|.++++||++.+.
T Consensus       123 ~~~~~v~~~H~~~v~~---lp~~~~v~a~~-~~~~~ai~~~~~~-~~gvQfHPE~~~~~~g~~il~nf~~~~~  190 (192)
T 1i1q_B          123 ANPLPVARYHSLVGSN---VPAGLTINAHF-NGMVMAVRHDADR-VCGFQFHPESILTTQGARLLEQTLAWAQ  190 (192)
T ss_dssp             CSSEEEEECCC---CC---CCTTCEEEEEE-TTEEEEEEETTTT-EEEESSBTTSTTCTTHHHHHHHHHHHHT
T ss_pred             CCCcEEEechhhHhhh---CCCccEEEECC-CCcEEEEEECCCC-EEEEEccCcccCCcccHHHHHHHHHHHh
Confidence            8899999999999975   67889999954 5779999987765 9999999999878999999999998754

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=100.00  E-value=5.9e-33  Score=207.76  Aligned_cols=149  Identities=25%  Similarity=0.426  Sum_probs=112.0

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcch--hHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK   83 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~--~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~   83 (174)
                      .+++...++|||||+||++++++...  +.+.+  ...++|+||||+|||+|+.++||++.+.+. ..+|. ..+...  
T Consensus        60 ~~~l~~~~~dglil~Gg~~~~~~~~~~~~~~~~--~~~~~PilGIC~G~Qll~~~~GG~v~~~~~-~~~G~-~~v~~~--  133 (218)
T 2vpi_A           60 AFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAI--FTIGKPVLGICYGMQMMNKVFGGTVHKKSV-REDGV-FNISVD--  133 (218)
T ss_dssp             HHHHHHHTCSEEEEEC---------CCCCCGGG--GTSSCCEEEETHHHHHHHHHTTCCEEEEEE-CSCEE-EEEEEC--
T ss_pred             hHHHhhcCCCEEEECCCCcccccccchhHHHHH--HHcCCCEEEEcHHHHHHHHHhCCceEeCCC-CcccE-EEEEEc--
Confidence            35665567999999999988764321  22222  356899999999999999999999998753 23443 344433  


Q ss_pred             CCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHH-H
Q 030626           84 GEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI-K  162 (174)
Q Consensus        84 ~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~-~  162 (174)
                      ..++||+++++.+.++++|++.+..   ++++++++|++ ++.+++++..+++ ++|+|||||+..++.+.+||++|+ +
T Consensus       134 ~~~~l~~~l~~~~~v~~~H~~~v~~---l~~~~~vlA~s-~~~i~ai~~~~~~-i~gvQfHPE~~~~~~g~~l~~~F~~~  208 (218)
T 2vpi_A          134 NTCSLFRGLQKEEVVLLTHGDSVDK---VADGFKVVARS-GNIVAGIANESKK-LYGAQFHPEVGLTENGKVILKNFLYD  208 (218)
T ss_dssp             TTSGGGTTCCSEEEEEECSEEEESS---CCTTCEEEEEE-TTEEEEEEETTTT-EEEESSCTTSTTSTTHHHHHHHHHTT
T ss_pred             cCChhHhcCCCCcEEeehhhhHhhh---cCCCCEEEEEc-CCeEEEEEECCCC-EEEEEcCCCCCCChhHHHHHHHHHHH
Confidence            4678999998888999999999976   67899999999 5689999987765 999999999987788999999999 6


Q ss_pred             HHH
Q 030626          163 MIV  165 (174)
Q Consensus       163 ~~~  165 (174)
                      .+.
T Consensus       209 ~~~  211 (218)
T 2vpi_A          209 IAG  211 (218)
T ss_dssp             TTC
T ss_pred             HhC
Confidence            553

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=100.00  E-value=1.2e-32  Score=228.33  Aligned_cols=148  Identities=26%  Similarity=0.456  Sum_probs=120.7

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcch--hHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK   83 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~--~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~   83 (174)
                      .+++...++|||||+|||+++++...  ..+.+  ...++|+||||+|||+|+.++||++.+... .++|... +...  
T Consensus        35 ~~~i~~~~~dgiIlsGGp~s~~~~~~~~~~~~~--~~~~~PvLGIC~G~Qlla~~~GG~v~~~~~-~e~G~~~-v~~~--  108 (503)
T 2ywb_A           35 LEEVLKHRPQALILSGGPRSVFDPDAPRPDPRL--FSSGLPLLGICYGMQLLAQELGGRVERAGR-AEYGKAL-LTRH--  108 (503)
T ss_dssp             HHHHHTTCCSEEEECCCSSCSSCTTCCCCCGGG--GCSSCCEEEETHHHHHHHHTTTCEEECC----CEEEEE-CSEE--
T ss_pred             HHHHHhcCCCEEEECCCCchhccCCCcchHHHH--HhCCCCEEEECHHHHHHHHHhCCeEeeCCC-CccceEE-EEec--
Confidence            46777778899999999999987542  22222  456899999999999999999999998762 3455443 2222  


Q ss_pred             CCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHH
Q 030626           84 GEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM  163 (174)
Q Consensus        84 ~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~  163 (174)
                      . +++|+++++.+.++++|++.|..   ++++++++|+++++.++|+++++++ ++|+|||||+..++.|.+||+||++.
T Consensus       109 ~-~~l~~~~~~~~~v~~~H~~~v~~---lp~g~~v~A~s~~~~i~ai~~~~~~-~~gvQFHPE~~~~~~g~~ll~~F~~~  183 (503)
T 2ywb_A          109 E-GPLFRGLEGEVQVWMSHQDAVTA---PPPGWRVVAETEENPVAAIASPDGR-AYGVQFHPEVAHTPKGMQILENFLEL  183 (503)
T ss_dssp             C-SGGGTTCCSCCEEEEECSCEEEE---CCTTCEEEEECSSCSCSEEECTTSS-EEEESBCTTSTTSTTHHHHHHHHHHH
T ss_pred             C-cHHhhcCCCccEEEEECCCcccc---CCCCCEEEEEECCCCEEEEEeCCCC-EEEEecCCCcccccccHHHHHHHHHH
Confidence            2 78999998888999999999987   7799999999999999999997765 99999999998888999999999965


Q ss_pred             H
Q 030626          164 I  164 (174)
Q Consensus       164 ~  164 (174)
                      |
T Consensus       184 ~  184 (503)
T 2ywb_A          184 A  184 (503)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=99.98  E-value=8.7e-32  Score=205.75  Aligned_cols=149  Identities=24%  Similarity=0.368  Sum_probs=115.1

Q ss_pred             CCCEEEeCCCCC-CC--CCcc-------------h-hHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCC-----c
Q 030626           13 NPRGVLISPGPG-AP--QDSG-------------I-SLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPL-----G   69 (174)
Q Consensus        13 ~~dgiii~GG~~-~~--~~~~-------------~-~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~-----~   69 (174)
                      ++|||||+||++ ++  +...             . .++.+++ +..++|+||||+|||+|+.++||++.+...     .
T Consensus        61 ~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~Qll~~a~Gg~v~~~~~~~~~~~  140 (254)
T 3fij_A           61 LVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQDISQVETKA  140 (254)
T ss_dssp             TCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHTTCCEESSGGGSSSCC
T ss_pred             hCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCceecccccccCcc
Confidence            689999999986 22  2111             0 2344444 567899999999999999999999987531     0


Q ss_pred             ccc-------cccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeC-CCCceEEE
Q 030626           70 VMH-------GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHK-KYKHLQGV  141 (174)
Q Consensus        70 ~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~-~~~~~~g~  141 (174)
                      ..|       ..+..+...  ..+.+++.+++.+.++++|++.+..   ++++++++|+++|+.|+|++.+ ++++++|+
T Consensus       141 ~~h~~~~~~~~g~~~v~~~--~~s~l~~~~~~~~~v~~~H~~~v~~---l~~g~~v~a~s~dg~ieai~~~~~~~~~~gv  215 (254)
T 3fij_A          141 LQHLQRVDEQLGSHTIDIE--PTSELAKHHPNKKLVNSLHHQFIKK---LAPSFKVTARTADGMIEAVEGDNLPSWYLGV  215 (254)
T ss_dssp             CCCBCCSCTTSCCEEEEEC--TTSSGGGTCCTTEEECCBCSCEESS---CCSSEEEEEEETTCCEEEEEESSCSSCEEEE
T ss_pred             ccccCCCCCccceEEEEeC--CCChHHHhcCCcEEEEEeccchhhc---cCCCcEEEEEeCCCcEEEEEecCCCCeEEEE
Confidence            111       123334333  4577888888888899999999976   6789999999999999999999 87779999


Q ss_pred             ecCCCCcCC--CchHHHHHHHHHHHHH
Q 030626          142 QFHPESIIT--TEGKTIVRNFIKMIVR  166 (174)
Q Consensus       142 QfHPE~~~~--~~~~~l~~~f~~~~~~  166 (174)
                      |||||+..+  +.+.+||++|++++.+
T Consensus       216 QfHPE~~~~~~~~~~~lf~~Fv~~~~~  242 (254)
T 3fij_A          216 QWHPELMFQTDPESEQLFQALVDESKK  242 (254)
T ss_dssp             SSCGGGTGGGCHHHHHHHHHHHHHHHS
T ss_pred             EcCCccCCCCCchHHHHHHHHHHHHHH
Confidence            999999765  4578999999998875

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=99.98  E-value=1.1e-31  Score=214.26  Aligned_cols=151  Identities=24%  Similarity=0.439  Sum_probs=117.5

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG   84 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~   84 (174)
                      .+++...++|||||+|||+++.+....++.+++ +..++|+||||+|||+|+.++||++.+++.+. ++.+.++....  
T Consensus       224 ~e~i~~~~~DGliLsGGPgdp~~~~~~~~~Ir~~~~~~~PILGIClG~QLLa~A~GG~v~k~~~gh-~g~n~pv~~~~--  300 (379)
T 1a9x_B          224 AEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGH-HGGNHPVKDVE--  300 (379)
T ss_dssp             HHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEEETHHHHHHHHHTTCCEEEEEEEE-EEEEEEEEETT--
T ss_pred             HHHHhhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCCEEEECchHHHHHHHhCcEEEeccccc-ccCceeeEecC--
Confidence            356766789999999999999876666677776 56689999999999999999999999986332 34443433211  


Q ss_pred             CCCcccCCCCceeecccccceecccCCCCCCcEEEEEc-CCCceEEEeeCCCCceEEEecCCCCcCCC-chHHHHHHHHH
Q 030626           85 EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIK  162 (174)
Q Consensus        85 ~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~a~~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~  162 (174)
                      .       ...+.+.++|++.|+.+++ ++++++++++ +|+.++|+++++++ ++|+|||||...++ ++..||++|++
T Consensus       301 ~-------g~v~its~~H~~aV~~~~L-p~~~~v~a~s~~Dg~ieai~~~~~p-i~gVQFHPE~~~~p~d~~~Lf~~Fl~  371 (379)
T 1a9x_B          301 K-------NVVMITAQNHGFAVDEATL-PANLRVTHKSLFDGTLQGIHRTDKP-AFSFQGNPEASPGPHDAAPLFDHFIE  371 (379)
T ss_dssp             T-------TEEEEEEEEEEEEECSTTC-CTTEEEEEEETTTCCEEEEEESSSS-EEEESSCTTCSSSCSTTTHHHHHHHH
T ss_pred             C-------CcEEEEecCccceEecccC-CCCeEEEEEeCCCCcEEEEEECCCC-EEEEEeCCcCCCCcccHHHHHHHHHH
Confidence            0       1123456789999986444 5789999998 78999999998766 99999999998776 57899999999


Q ss_pred             HHHHHH
Q 030626          163 MIVRKE  168 (174)
Q Consensus       163 ~~~~~~  168 (174)
                      .+.+.+
T Consensus       372 ~~~~~~  377 (379)
T 1a9x_B          372 LIEQYR  377 (379)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            987643

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=99.98  E-value=2.4e-32  Score=227.49  Aligned_cols=149  Identities=26%  Similarity=0.416  Sum_probs=122.0

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcch--hHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK   83 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~--~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~   83 (174)
                      .+++...++|||||+|||+++++...  ..+.+  ...++|+||||+|||+|+.++||++.+.. ..++|... +...  
T Consensus        43 ~~~i~~~~~dgiILsGGp~s~~~~~~~~~~~~~--~~~g~PvLGIC~G~Qlla~~~GG~V~~~~-~~e~G~~~-v~~~--  116 (525)
T 1gpm_A           43 EAQIRDFNPSGIILSGGPESTTEENSPRAPQYV--FEAGVPVFGVCYGMQTMAMQLGGHVEASN-EREFGYAQ-VEVV--  116 (525)
T ss_dssp             HHHHHHHCCSEEEECCCSSCTTSTTCCCCCGGG--GTSSSCEEEETHHHHHHHHHHTCEEECCS-SCEEEEEE-EEEC--
T ss_pred             HHHHhccCCCEEEECCcCccccccCCcchHHHH--HHCCCCEEEEChHHHHHHHHcCCEEEeCC-CcccceEE-EEeC--
Confidence            46677778999999999999987542  22222  35679999999999999999999999886 33455443 3332  


Q ss_pred             CCCCcccCCCC--------ceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHH
Q 030626           84 GEDGLLAGLSN--------PFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKT  155 (174)
Q Consensus        84 ~~~~l~~~~~~--------~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~  155 (174)
                      ..++||++++.        .+.++++|++.|..   ++++++++|+++++.++|+++.+++ +||+|||||+..++.|.+
T Consensus       117 ~~~~L~~~l~~~~~~~~~~~~~v~~~H~~~V~~---lp~g~~v~A~s~~~~i~ai~~~~~~-i~gvQFHPE~~~~~~g~~  192 (525)
T 1gpm_A          117 NDSALVRGIEDALTADGKPLLDVWMSHGDKVTA---IPSDFITVASTESCPFAIMANEEKR-FYGVQFHPEVTHTRQGMR  192 (525)
T ss_dssp             SCCTTTTTCCSEECTTSCEEEEEEEEECSEEEE---CCTTCEEEEECSSCSCSEEEETTTT-EEEESBCTTSTTSTTHHH
T ss_pred             CCCHhhccCccccccccccceEEEEEccceeee---CCCCCEEEEECCCCCEEEEEECCCC-EEEEecCCCCCcchhHHH
Confidence            35689999987        78899999999986   7799999999999999999997765 999999999988889999


Q ss_pred             HHHHHHHHH
Q 030626          156 IVRNFIKMI  164 (174)
Q Consensus       156 l~~~f~~~~  164 (174)
                      ||+||+..+
T Consensus       193 ll~nF~~~i  201 (525)
T 1gpm_A          193 MLERFVRDI  201 (525)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhh
Confidence            999999543

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=99.98  E-value=8.3e-33  Score=230.28  Aligned_cols=150  Identities=25%  Similarity=0.401  Sum_probs=112.7

Q ss_pred             HHHHhcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626            7 VSYCRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus         7 ~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      +++...++|||||+|||+++++.+.. ....+ ...++|+||||+|||+|+.++||++.+... .++|... +...  ..
T Consensus        47 ~~i~~~~~dgIILsGGp~sv~~~~~~-~~~~~~~~~~~PvLGIC~G~Qlla~~lGG~V~~~~~-~e~G~~~-v~~~--~~  121 (527)
T 3tqi_A           47 ETIRDFNPHGIILSGGPETVTLSHTL-RAPAFIFEIGCPVLGICYGMQTMAYQLGGKVNRTAK-AEFGHAQ-LRVL--NP  121 (527)
T ss_dssp             SSSTTTCCSEEEECCCCC----------CCCSTTTSSSCEEEETHHHHHHHHHSSSCBC------CEEEEE-EEES--SC
T ss_pred             HHHHhcCCCEEEECCcCcccccCCCh-hhHHHHHhcCCCEEEEChHHHHHHHHcCCeEEeCCC-ccccceE-EEEc--CC
Confidence            34555678999999999998876432 11111 456899999999999999999999998863 3455443 3332  35


Q ss_pred             CCcccCCCC--------ceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHH
Q 030626           86 DGLLAGLSN--------PFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIV  157 (174)
Q Consensus        86 ~~l~~~~~~--------~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~  157 (174)
                      +++|+++++        .+.++++|++.+..   +|++++++|+++++.++|+++.+++ +||+|||||+..++.|.+||
T Consensus       122 ~~l~~~l~~~~~~~~~~~~~v~~~H~d~v~~---lp~g~~v~A~s~~~~i~ai~~~~~~-~~GvQFHPE~~~t~~G~~ll  197 (527)
T 3tqi_A          122 AFLFDGIEDQVSPQGEPLLDVWMSHGDIVSE---LPPGFEATACTDNSPLAAMADFKRR-FFGLQFHPEVTHTPQGHRIL  197 (527)
T ss_dssp             TTTTSSCCSBCCTTSCCEEEEEEESSSCBCS---CCTTCEEEEEETTEEEEEEECSSSC-EEEESBCSSSTTSTTHHHHH
T ss_pred             ChhhcCCccccccccccceEEEEEcccchhc---cCCCCEEEEEeCCCcEEEEEcCCCC-EEEEEeccccccccccchhh
Confidence            689999986        58899999999976   7799999999999999999997766 99999999999889999999


Q ss_pred             HHHHHHHH
Q 030626          158 RNFIKMIV  165 (174)
Q Consensus       158 ~~f~~~~~  165 (174)
                      +||+..++
T Consensus       198 ~nF~~~i~  205 (527)
T 3tqi_A          198 AHFVIHIC  205 (527)
T ss_dssp             HHHHHTTS
T ss_pred             hhhhhhcc
Confidence            99996543

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=99.97  E-value=5.4e-32  Score=226.35  Aligned_cols=153  Identities=26%  Similarity=0.415  Sum_probs=120.7

Q ss_pred             HHHHhcCCCEEEeCCCCCCCCCcch--hHHHHHH--cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEecc
Q 030626            7 VSYCRKNPRGVLISPGPGAPQDSGI--SLQTVLE--LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE   82 (174)
Q Consensus         7 ~~~~~~~~dgiii~GG~~~~~~~~~--~~~~i~~--~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~   82 (174)
                      +++...++||||||||++++++.+.  ....+.+  ...++|+||||+|||+|+.++||++.+.. ..++|.........
T Consensus        44 ~~i~~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~PvLGIC~G~QlLa~~lGG~V~~~~-~~E~G~~~l~~~~~  122 (556)
T 3uow_A           44 KDIKDMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSK-TSEYGCTDVNILRN  122 (556)
T ss_dssp             GGTTTSCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHTTCCEEEETHHHHHHHHHTTCEEEEEE-EEEEEEEEEEECCT
T ss_pred             HHHhhcCCCEEEECCCCCcccccCCcchhHHHHHHhhhcCCCEEEECHHHHHHHHHhCCcEecCC-CcccCCcceeeccC
Confidence            3455558899999999999987643  2233333  34579999999999999999999998875 33455433222211


Q ss_pred             C----------------------------CCCCcccCC-CCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeC
Q 030626           83 K----------------------------GEDGLLAGL-SNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHK  133 (174)
Q Consensus        83 ~----------------------------~~~~l~~~~-~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~  133 (174)
                      .                            ..+++|+++ ++.+.++++|++.+..   ++++++++|+++++.++|++++
T Consensus       123 ~~~~~~p~v~~~~~~~~~mg~~~n~~~~~~~~~Lf~gl~~~~~~v~~~H~d~V~~---lp~g~~vlA~s~~~~i~ai~~~  199 (556)
T 3uow_A          123 DNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLFENIKSDITTVWMNHNDEVTK---IPENFYLVSSSENCLICSIYNK  199 (556)
T ss_dssp             TGGGGCSGGGGC---CCHHHHHTTSCCCC--CGGGTTCCSSEEEEEEEEEEEEEE---CCTTCEEEEEETTEEEEEEEET
T ss_pred             cccccccceecccccccccccccccccccccchhhcccccCceEEEEEccceeec---cCCCcEEEEEeCCCCEEEEEEC
Confidence            1                            134799999 8889999999999977   7799999999999999999997


Q ss_pred             CCCceEEEecCCCCcCCCchHHHHHHHHHHH
Q 030626          134 KYKHLQGVQFHPESIITTEGKTIVRNFIKMI  164 (174)
Q Consensus       134 ~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~  164 (174)
                      +++ +||+|||||++.++.|.+||+||+..+
T Consensus       200 ~~~-i~GvQFHPE~~~~~~G~~ll~nFl~~i  229 (556)
T 3uow_A          200 EYN-IYGVQYHPEVYESLDGELMFYNFAYNI  229 (556)
T ss_dssp             TTT-EEEESSCTTSTTSTTHHHHHHHHHTTT
T ss_pred             CCC-EEEEEcCCCCCccccchHHHHHHHHHh
Confidence            765 999999999998889999999999543

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=99.97  E-value=9.1e-30  Score=192.94  Aligned_cols=140  Identities=17%  Similarity=0.225  Sum_probs=111.1

Q ss_pred             CCCEEEeCCCCCCCCCcc--h----hHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626           13 NPRGVLISPGPGAPQDSG--I----SLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~--~----~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      ++|||||+||++++++..  .    ..+.+++ ...++|+||||+|||+|+.++||++.+...+...| +..+..  ...
T Consensus        57 ~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~g~~~G-~~~v~~--~~~  133 (239)
T 1o1y_A           57 EYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEIG-WYFVEK--VSD  133 (239)
T ss_dssp             GCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTCCEEE-EEEEEE--CCC
T ss_pred             cCCEEEECCCCccccCCccChhHHHHHHHHHHHHHCCCCEEEEchhHHHHHHHcCCeEecCCCCCccc-cEEEEE--CCC
Confidence            689999999998887653  2    2344444 45679999999999999999999999987434344 334432  246


Q ss_pred             CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626           86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV  165 (174)
Q Consensus        86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~  165 (174)
                      +++|+++++.+.++++|++.+.    ++++++++|+++++.+++++.++   ++|+|||||+.     ..++++|++...
T Consensus       134 ~~l~~~~~~~~~~~~~H~~~v~----lp~~~~vlA~s~~~~iea~~~~~---i~gvQfHPE~~-----~~~~~~~~~~~~  201 (239)
T 1o1y_A          134 NKFFREFPDRLRVFQWHGDTFD----LPRRATRVFTSEKYENQGFVYGK---AVGLQFHIEVG-----ARTMKRWIEAYK  201 (239)
T ss_dssp             CGGGTTSCSEEEEEEEESEEEC----CCTTCEEEEECSSCSCSEEEETT---EEEESSBSSCC-----HHHHHHHHHHTH
T ss_pred             CchHHhCCCCceeEeecCCccc----cCCCCEEEEEcCCCCEEEEEECC---EEEEEeCccCC-----HHHHHHHHHHhH
Confidence            7899999888999999999984    56899999999999999999873   99999999984     458999988755


Q ss_pred             HH
Q 030626          166 RK  167 (174)
Q Consensus       166 ~~  167 (174)
                      ..
T Consensus       202 ~~  203 (239)
T 1o1y_A          202 DE  203 (239)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=99.97  E-value=3.2e-30  Score=195.15  Aligned_cols=140  Identities=20%  Similarity=0.279  Sum_probs=111.3

Q ss_pred             CCCEEEeCCCCCCCCCc---ch------hHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEec-
Q 030626           13 NPRGVLISPGPGAPQDS---GI------SLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD-   81 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~---~~------~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~-   81 (174)
                      ++|+|||+|||+++.+.   ..      ..+.+++ ...++|+||||+|||+|+.++||++.+.+. ..+|.. .+... 
T Consensus        45 ~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~~-~~~G~~-~v~~~~  122 (236)
T 3l7n_A           45 DFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQLMGVAYGADYLHSPK-KEIGNY-LISLTE  122 (236)
T ss_dssp             GCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTTCEEEEETHHHHHHHHHTTCCCEEEEE-EEEEEE-EEEECT
T ss_pred             ccCEEEECCCCCCcccccccCcccchHHHHHHHHHHHHcCCCEEEEchHHHHHHHHhCCEEecCCC-ceeeeE-EEEEcc
Confidence            68999999999997432   11      2344554 567899999999999999999999988763 345544 44443 


Q ss_pred             cCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHH
Q 030626           82 EKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI  161 (174)
Q Consensus        82 ~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~  161 (174)
                      ...++++|.++++.+.++++|++...    ++++++++|+++++.+++++..+  +++|+|||||++     ..++++|+
T Consensus       123 ~~~~~~l~~~~~~~~~v~~~H~~~~~----lp~~~~vla~s~~~~~~a~~~~~--~v~gvQfHPE~~-----~~~~~~~~  191 (236)
T 3l7n_A          123 AGKMDSYLSDFSDDLLVGHWHGDMPG----LPDKAQVLAISQGCPRQIIKFGP--KQYAFQCHLEFT-----PELVAALI  191 (236)
T ss_dssp             TGGGCGGGTTSCSEEEEEEEEEEECC----CCTTCEEEEECSSCSCSEEEEET--TEEEESSBSSCC-----HHHHHHHH
T ss_pred             CcccChHHhcCCCCcEEEEecCCccc----CCChheEEEECCCCCEEEEEECC--CEEEEEeCCCCC-----HHHHHHHH
Confidence            22357899999999999999998733    56899999999999999999875  599999999984     77999998


Q ss_pred             HHHH
Q 030626          162 KMIV  165 (174)
Q Consensus       162 ~~~~  165 (174)
                      +...
T Consensus       192 ~~~~  195 (236)
T 3l7n_A          192 AQED  195 (236)
T ss_dssp             HHCS
T ss_pred             Hhhh
Confidence            8765

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=99.97  E-value=1.6e-30  Score=221.64  Aligned_cols=145  Identities=26%  Similarity=0.442  Sum_probs=110.5

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcch--hHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK   83 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~--~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~   83 (174)
                      .+++...++|||||+|||+++++...  +.+.+  ...++|+||||+|||+|+.++||++.+... .++|. ..+...  
T Consensus        65 ~e~i~~~~~dGIILsGGp~s~~~~~~~~~~~~i--~~~g~PvLGIC~G~QlLa~~lGG~v~~~~~-~e~G~-~~v~~~--  138 (697)
T 2vxo_A           65 AFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAI--FTIGKPVLGICYGMQMMNKVFGGTVHKKSV-REDGV-FNISVD--  138 (697)
T ss_dssp             HHHHHHHTCSEEEEEECC-------CCCCCGGG--TTSSCCEEEEEHHHHHHHHHTTCCBCC--------C-EEEEEC--
T ss_pred             HHHHhhcCCCEEEECCCCCcccCccchhHHHHH--HhCCCCEEEECHHHHHHHHHhCCeEeecCC-Cccce-EEEEec--
Confidence            45676678999999999999875432  22222  356799999999999999999999998763 34554 344433  


Q ss_pred             CCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHH
Q 030626           84 GEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI  161 (174)
Q Consensus        84 ~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~  161 (174)
                      ..++||+++++.+.++++|++.+..   ++++++++|++++ .++|+++.+++ +||+|||||+..++.|.+||+||+
T Consensus       139 ~~~~Lf~~l~~~~~v~~~H~~~V~~---lp~g~~vlA~s~~-~i~ai~~~~~~-i~GvQFHPE~~~t~~g~~ll~nFl  211 (697)
T 2vxo_A          139 NTCSLFRGLQKEEVVLLTHGDSVDK---VADGFKVVARSGN-IVAGIANESKK-LYGAQFHPEVGLTENGKVILKNFL  211 (697)
T ss_dssp             TTSGGGTTCCSEEEECCCSSCCBSS---CCTTCEEEEEETT-EEEEEEETTTT-EEEESSCTTSSSSTTHHHHHHHHH
T ss_pred             CCChhhhcCCccCcceeecccceec---CCCCeEEEEEeCC-ceEEEEeCCCC-EEEEEecccCCCCccchhhhhhhh
Confidence            3578999998888999999999976   6789999999965 99999998765 999999999988899999999999

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=99.96  E-value=5.4e-30  Score=194.98  Aligned_cols=127  Identities=20%  Similarity=0.225  Sum_probs=101.2

Q ss_pred             CCCEEEeCCCCCCCCCcchh----HHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEecc-CCCC
Q 030626           13 NPRGVLISPGPGAPQDSGIS----LQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE-KGED   86 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~----~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~-~~~~   86 (174)
                      ++|+|||+||++++++...+    .+.+++ +..++|+||||+|+|+|+.++||+|.+.+. .++|.. .+.... ...+
T Consensus        48 ~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qll~~~lGG~V~~~~~-~e~G~~-~v~~~~~~~~~  125 (250)
T 3m3p_A           48 DCSGLAMMGGPMSANDDLPWMPTLLALIRDAVAQRVPVIGHCLGGQLLAKAMGGEVTDSPH-AEIGWV-RAWPQHVPQAL  125 (250)
T ss_dssp             GSSEEEECCCSSCTTSCCTTHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEE-EEEEEE-EEEECSSHHHH
T ss_pred             cCCEEEECCCCCcccccchHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCEEEeCCC-CceeeE-EEEEecCCCCc
Confidence            68999999999998765333    233443 456899999999999999999999999863 334443 444332 1235


Q ss_pred             CcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCc
Q 030626           87 GLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESI  148 (174)
Q Consensus        87 ~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~  148 (174)
                      ++| ++++.+.++++|++.+.    ++++++++|+++++.++|++..+  +++|+|||||++
T Consensus       126 ~l~-g~~~~~~v~~~H~~~v~----lp~~~~vlA~s~~~~~~a~~~~~--~~~GvQfHPE~~  180 (250)
T 3m3p_A          126 EWL-GTWDELELFEWHYQTFS----IPPGAVHILRSEHCANQAYVLDD--LHIGFQCHIEMQ  180 (250)
T ss_dssp             HHH-SCSSCEEEEEEEEEEEC----CCTTEEEEEEETTEEEEEEEETT--TEEEESSCTTCC
T ss_pred             ccc-cCCCccEEEEEccceee----cCCCCEEEEEeCCCCEEEEEECC--eeEEEEeCCcCC
Confidence            788 78889999999999993    67899999999999999999976  499999999984

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=99.96  E-value=3.7e-30  Score=217.81  Aligned_cols=146  Identities=22%  Similarity=0.355  Sum_probs=117.3

Q ss_pred             cCCCEEEeCCCCCCCCCcch-h----HHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626           12 KNPRGVLISPGPGAPQDSGI-S----LQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~~~~~-~----~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      .++|||||+|||+++++... +    .+.++. +..++|+||||+|||+|+.++||++.+... ..+|....+...   .
T Consensus       485 ~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~alGG~V~~~~~-~~~G~~~~i~~~---~  560 (645)
T 3r75_A          485 ARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRREV-PNQGIQVEIDLF---G  560 (645)
T ss_dssp             GGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEE-EEEEEEEEEEET---T
T ss_pred             cCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHhCCEEEcCCC-cccccceEEeee---c
Confidence            46899999999999998763 2    233443 456899999999999999999999998763 235555544433   4


Q ss_pred             CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626           86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV  165 (174)
Q Consensus        86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~  165 (174)
                      ++++.+++..+.++++|.+.+..   ++++++++|+++++.|+++++++   ++|+|||||+..++.|.+||+||++.+.
T Consensus       561 ~~l~~~~~~~~~v~~~h~~~~~~---lp~g~~v~A~s~dg~i~Ai~~~~---~~GVQFHPE~~~t~~G~~Ll~nFl~~~~  634 (645)
T 3r75_A          561 QRERVGFYNTYVAQTVRDEMDVD---GVGTVAISRDPRTGEVHALRGPT---FSSMQFHAESVLTVDGPRILGEAITHAI  634 (645)
T ss_dssp             EEEEEEEEEEEEEBCSCSEEEET---TTEEEEEEECTTTCBEEEEEETT---EEEESSBTTSTTCTTHHHHHHHHHHHHT
T ss_pred             CcceecCCCcEEEEEehhhcccc---CCCCeEEEEEcCCCcEEEEEcCC---EEEEEeCCeecCCcchHHHHHHHHHHHH
Confidence            56777777778888778766644   67899999999999999999863   7999999999888899999999999886


Q ss_pred             HH
Q 030626          166 RK  167 (174)
Q Consensus       166 ~~  167 (174)
                      +.
T Consensus       635 ~~  636 (645)
T 3r75_A          635 RR  636 (645)
T ss_dssp             TT
T ss_pred             hc
Confidence            43

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=99.96  E-value=1.2e-29  Score=195.65  Aligned_cols=153  Identities=20%  Similarity=0.210  Sum_probs=105.8

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCc--cc--------------c---
Q 030626           13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG--VM--------------H---   72 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~--~~--------------~---   72 (174)
                      ++|||||+||+++....+ .++.++. ...++|+||||+|||+|+.++||++......  .+              +   
T Consensus        67 ~~dgiil~GG~~~~~~~~-~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~~~~~~~s~E~~~~~~~~~l~~~~~~~~  145 (273)
T 2w7t_A           67 GCDGIFVPGGFGNRGVDG-KCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWSDANSEEFNKESTHQVVRIMDCDRN  145 (273)
T ss_dssp             TCSEEEECCCCTTTTHHH-HHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTTCCTTCEETTTCTTCSCEEEECCGGGBC
T ss_pred             hCCEEEecCCCCCcCchh-HHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccccccCCchhhcccccCCCceeecccccc
Confidence            689999999998754332 3344443 3467999999999999999999998532110  00              1   


Q ss_pred             -------cccceeEeccCCCCCcccCCCCceeecc--cccceecccCC--C-CCCcEEEEEcCC----C-ceEEEeeCCC
Q 030626           73 -------GKSSLVYYDEKGEDGLLAGLSNPFTAGR--YHSLVIEKESF--P-SDALEVTAWTED----G-LIMAARHKKY  135 (174)
Q Consensus        73 -------~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~H~~~v~~~~l--~-~~~~~~~a~s~~----~-~i~a~~~~~~  135 (174)
                             ..|..+... ...+.++..++....+++  +|+|.++++.+  + +++++++|++++    + .+++++.+++
T Consensus       146 ~~~~~~~~g~~~v~~~-~~~s~l~~~~~~~~~v~~~H~Hsy~v~~~~v~~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~  224 (273)
T 2w7t_A          146 KMGANMHLGACDVYIV-EKSSIMAKIYSKSNIVVERHRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSL  224 (273)
T ss_dssp             SSCBCCEEEEEEEEEC-CTTSHHHHHTTTCSEEEEEEEECCEECGGGHHHHHHTTCEEEEESCTTCCTTCCEEEEECTTS
T ss_pred             ccCCcccccceEEEEe-cCCcHHHHHhCCCceEEeecccccccCHHHHHhhccCCcEEEEEcCCcCCCCCeEEEEEcCCC
Confidence                   111222221 113445555554444444  67888865311  3 578999999988    5 8999999988


Q ss_pred             CceEEEecCCCCcCCCc-hHHHHHHHHHHHHHH
Q 030626          136 KHLQGVQFHPESIITTE-GKTIVRNFIKMIVRK  167 (174)
Q Consensus       136 ~~~~g~QfHPE~~~~~~-~~~l~~~f~~~~~~~  167 (174)
                      |+++|+|||||+..++. +.+||++|++.+.++
T Consensus       225 p~~~GvQfHPE~~~~~~~~~~l~~~Fv~~~~~~  257 (273)
T 2w7t_A          225 RFFLAVQFHPEFISTPMDPAPTYLSFMAAAAKK  257 (273)
T ss_dssp             SSEEEESSCGGGSCBTTBCCHHHHHHHHHHHTC
T ss_pred             CeEEEEeCCCCcCCCCCchHHHHHHHHHHHHHH
Confidence            87789999999976654 589999999988764

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=99.95  E-value=2.5e-29  Score=197.41  Aligned_cols=152  Identities=16%  Similarity=0.257  Sum_probs=105.4

Q ss_pred             CCCEEEeCCCCCCCCCcc------hhHHHHHHc-C-C-CCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEec-c
Q 030626           13 NPRGVLISPGPGAPQDSG------ISLQTVLEL-G-P-TVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD-E   82 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~------~~~~~i~~~-~-~-~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~-~   82 (174)
                      ++|||||+||++++.+..      .+++.+++. . . ++||||||+|||+|+.++||++..... ..++...++... .
T Consensus        86 ~~dglil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~~~~-~~~g~~~p~~~~~~  164 (315)
T 1l9x_A           86 SINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTAT-DTVDVAMPLNFTGG  164 (315)
T ss_dssp             HSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEEE-EEEEEEECCEECST
T ss_pred             cCCEEEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCccccccc-cccCCCCCeeeccC
Confidence            689999999999876541      233444432 2 2 699999999999999999998654331 123332233222 2


Q ss_pred             CCCCCcccCCCCc--------eeecccccceecccC-----CCCCCcEEEEEcCCCceEEE---eeCCCCceEEEecCCC
Q 030626           83 KGEDGLLAGLSNP--------FTAGRYHSLVIEKES-----FPSDALEVTAWTEDGLIMAA---RHKKYKHLQGVQFHPE  146 (174)
Q Consensus        83 ~~~~~l~~~~~~~--------~~~~~~H~~~v~~~~-----l~~~~~~~~a~s~~~~i~a~---~~~~~~~~~g~QfHPE  146 (174)
                      ...+++|+.+++.        ..++++|++.|+++.     .++++++++|+++|+.++++   ++++++ ++|+|||||
T Consensus       165 ~~~s~L~~~~~~~~~~~l~~~~~~~~~H~~~V~~~~~~~~~~l~~g~~v~A~s~dg~ve~i~~i~~~~~~-i~GVQfHPE  243 (315)
T 1l9x_A          165 QLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYP-VYGVQWHPE  243 (315)
T ss_dssp             TTTCSTTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTCHHHHHHEEEEEEEESSSCEEEEEEEESSSC-EEEESSCTT
T ss_pred             CCCChHHHhcChhhhhhccccceEEEhhhhhcCccccccccccCCCCEEEEEcCCCCEEEEEEeccCCCC-EEEEEeCCC
Confidence            2467888888643        123459999997321     14578999999999887666   555555 999999999


Q ss_pred             CcCC---C------------chHHHHHHHHHHHHH
Q 030626          147 SIIT---T------------EGKTIVRNFIKMIVR  166 (174)
Q Consensus       147 ~~~~---~------------~~~~l~~~f~~~~~~  166 (174)
                      +..+   .            ++.+||++|++.+.+
T Consensus       244 ~~~~e~~~~~~~p~s~~a~~~~~~lf~~Fv~~a~~  278 (315)
T 1l9x_A          244 KAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARK  278 (315)
T ss_dssp             HHHHCCSSCTTCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcccccccccCCccHHHHHHHHHHHHHHHHHHHh
Confidence            8541   1            367999999998764

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=99.95  E-value=1.4e-28  Score=191.02  Aligned_cols=154  Identities=16%  Similarity=0.145  Sum_probs=106.2

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCc------c-----------cccc
Q 030626           13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG------V-----------MHGK   74 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~------~-----------~~~~   74 (174)
                      ++|||||+||+++... ....+.+++ ...++|+||||+|||+|+.++||++......      .           .+..
T Consensus        90 ~~dgiil~GG~~~~~~-~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~~~~~~~~~e~~~~~~~~~i~~~~~h~~  168 (289)
T 2v4u_A           90 KADGILVPGGFGIRGT-LGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEHNP  168 (289)
T ss_dssp             HCSEEEECSCCSSTTH-HHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHSCCTTEEESTTCTTCSEEEEEECCBCCT
T ss_pred             hCCEEEecCCCCchhH-HHHHHHHHHHHHcCCcEEEECccHHHHHHHHhccccccccCcccccCccccccceecchhhcc
Confidence            5899999999987433 233455554 4568999999999999999999998521100      0           0111


Q ss_pred             ----------cceeEeccCCCCCcccCCCCceee--cccccceecccCC--CC-CCcEEEEEcCCCc-eEEEeeCCCCce
Q 030626           75 ----------SSLVYYDEKGEDGLLAGLSNPFTA--GRYHSLVIEKESF--PS-DALEVTAWTEDGL-IMAARHKKYKHL  138 (174)
Q Consensus        75 ----------~~~~~~~~~~~~~l~~~~~~~~~~--~~~H~~~v~~~~l--~~-~~~~~~a~s~~~~-i~a~~~~~~~~~  138 (174)
                                +..+... ...+.+++.++....+  +++|+|.|+++.+  ++ ++++++|+++|+. |++++..++|++
T Consensus       169 ~~~~~~~~~g~~~v~~~-~~~s~l~~~~~~~~~v~~~H~H~y~vn~~~v~~l~~~g~~v~A~s~dg~~ieaie~~~~p~~  247 (289)
T 2v4u_A          169 GNLGGTMRLGIRRTVFK-TENSILRKLYGDVPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYF  247 (289)
T ss_dssp             TCSSCBCEEEEEEEEES-CSCCHHHHHTTSCSEEEEEEEECEEECGGGSGGGTTSSEEEEEEETTSCSEEEEEESSSSCE
T ss_pred             cccCCccccceEEEEEe-cCCCHHHHhcCCCceEEEecccccccCHHHHHhcccCCeEEEEEcCCCCeEEEEEcCCCCeE
Confidence                      1222221 1234455555543334  4456666655322  45 8999999999997 999999988867


Q ss_pred             EEEecCCCCcCCC-chHHHHHHHHHHHHHHH
Q 030626          139 QGVQFHPESIITT-EGKTIVRNFIKMIVRKE  168 (174)
Q Consensus       139 ~g~QfHPE~~~~~-~~~~l~~~f~~~~~~~~  168 (174)
                      +|+|||||+..++ ++.+||++|++.+.+..
T Consensus       248 lGvQfHPE~~~~~~~~~~lf~~Fv~~~~~~~  278 (289)
T 2v4u_A          248 VGVQFHPEFSSRPMKPSPPYLGLLLAATGNL  278 (289)
T ss_dssp             EEESSBGGGGCBTTBCCHHHHHHHHHHHTCH
T ss_pred             EEEECCCCCCCCCCchHHHHHHHHHHHHhhh
Confidence            7999999998765 36899999999887543

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=99.95  E-value=1.6e-29  Score=188.18  Aligned_cols=148  Identities=22%  Similarity=0.268  Sum_probs=98.4

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHH---HHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCccc----------
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQT---VLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVM----------   71 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~---i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~----------   71 (174)
                      .+++.  ++|+|||| |+|++.+....++.   +.. ...++|+||||+|||+|+.++|+++.+......          
T Consensus        35 ~~~l~--~~D~lilP-G~g~~~~~~~~~~~~~~i~~~~~~~~PvlGIClG~QlL~~~~g~~~~~~~~~~~gl~~~~~~v~  111 (211)
T 4gud_A           35 PQVVL--AADKLFLP-GVGTASEAMKNLTERDLIELVKRVEKPLLGICLGMQLLGKLSEEKGQKADEIVQCLGLVDGEVR  111 (211)
T ss_dssp             HHHHH--HCSEEEEC-CCSCHHHHHHHHHHTTCHHHHHHCCSCEEEETHHHHTTSSEECCC----CCCEECCCSSSCEEE
T ss_pred             HHHHh--CCCEEEEC-CCCCHHHHHHHHHhcChHHHHHHcCCCEEEEchhHhHHHHHhCCcccccCCccccceeccceEE
Confidence            45665  47999997 45655443332211   222 345799999999999999999988766432110          


Q ss_pred             ----------ccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEE
Q 030626           72 ----------HGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGV  141 (174)
Q Consensus        72 ----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~  141 (174)
                                +..+..+  .....++++++++....++++|++.+.      .+..++|+++++...++...+++ +||+
T Consensus       112 ~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~H~~~v~------~~~~~~a~~~~g~~~~~~v~~~~-v~Gv  182 (211)
T 4gud_A          112 LLQTGDLPLPHMGWNTV--QVKEGHPLFNGIEPDAYFYFVHSFAMP------VGDYTIAQCEYGQPFSAAIQAGN-YYGV  182 (211)
T ss_dssp             ECCCTTSCSSEEEEECC--EECTTCGGGTTCCTTCCEEEEESEECC------CCTTEEEEEESSSEEEEEEEETT-EEEE
T ss_pred             EcccCCcceeeccceee--eeeccChhhcCCCCCcEEEEEeeEEeC------CCCeEEEEecCCCeEEEEEeCCC-EEEE
Confidence                      0111111  112467899999988999999998874      35567888888876555555545 9999


Q ss_pred             ecCCCCcCCCchHHHHHHHHHHHHH
Q 030626          142 QFHPESIITTEGKTIVRNFIKMIVR  166 (174)
Q Consensus       142 QfHPE~~~~~~~~~l~~~f~~~~~~  166 (174)
                      |||||+ +++.|.+||+||++.+..
T Consensus       183 QFHPE~-s~~~G~~ll~nFl~~~ge  206 (211)
T 4gud_A          183 QFHPER-SSKAGARLIQNFLELRGE  206 (211)
T ss_dssp             SSCGGG-SHHHHHHHHHHHHHC---
T ss_pred             EccCEe-cCccHHHHHHHHHHHhcc
Confidence            999998 578899999999987643

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=99.95  E-value=8.8e-28  Score=178.74  Aligned_cols=145  Identities=14%  Similarity=0.214  Sum_probs=107.4

Q ss_pred             CCCEEEeCCCCCCCCCc--------chhHHHHHH-cCCCCcEEeehHhHHHHHHH--hCCeeccCCCcccccccceeEec
Q 030626           13 NPRGVLISPGPGAPQDS--------GISLQTVLE-LGPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMHGKSSLVYYD   81 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~--------~~~~~~i~~-~~~~~PilGIC~G~Qll~~~--~gg~v~~~~~~~~~~~~~~~~~~   81 (174)
                      ++|+|||+||.....+.        ....+.+++ ...++|+||||+|+|+|+.+  ++|++.+.+....+..+..+...
T Consensus        41 ~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~v~~~~~~~~~~g~~~v~~~  120 (213)
T 3d54_D           41 DYELIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGALLQNSSGKFICKWVDLIVE  120 (213)
T ss_dssp             SCSEEEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSEEECCSSSSCBCCEEEEEEC
T ss_pred             cCCEEEECCCCchhhhhccccccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCCeecCCCCceEeeeEEEEeC
Confidence            68999999997543321        223455554 45679999999999999999  99999887633224555555543


Q ss_pred             cCCCCCcccCCCC--ceeecccc---cceecccCCCCCCcEEEEEcCC-----CceEEEeeCCCCceEEEecCCCCcC--
Q 030626           82 EKGEDGLLAGLSN--PFTAGRYH---SLVIEKESFPSDALEVTAWTED-----GLIMAARHKKYKHLQGVQFHPESII--  149 (174)
Q Consensus        82 ~~~~~~l~~~~~~--~~~~~~~H---~~~v~~~~l~~~~~~~~a~s~~-----~~i~a~~~~~~~~~~g~QfHPE~~~--  149 (174)
                      . ..+++++.+++  .+.++.+|   ++.+.     +++++++|++++     +.|+|++..++ +++|+|||||++.  
T Consensus       121 ~-~~~~l~~~~~~~~~~~~~~~H~~~s~~~~-----~~~~~~~a~~~~~ng~~~~i~a~~~~~~-~~~gvQfHPE~~~~~  193 (213)
T 3d54_D          121 N-NDTPFTNAFEKGEKIRIPIAHGFGRYVKI-----DDVNVVLRYVKDVNGSDERIAGVLNESG-NVFGLMPHPERAVEE  193 (213)
T ss_dssp             C-CSSTTSTTSCTTCEEEEECCBSSCEEECS-----SCCEEEEEESSCSSCCGGGEEEEECSSS-CEEEECSCSTTTTST
T ss_pred             C-CCCceeeccCCCCEEEEEeecCceEEEec-----CCCcEEEEEcCCCCCCccceeEEEcCCC-CEEEEeCCHHHhcCH
Confidence            2 46789988875  45566688   45553     368899999876     48999998654 4999999999976  


Q ss_pred             ---CCchHHHHHHHHHHH
Q 030626          150 ---TTEGKTIVRNFIKMI  164 (174)
Q Consensus       150 ---~~~~~~l~~~f~~~~  164 (174)
                         ++.+.+||+||++.+
T Consensus       194 ~~~~~~g~~l~~~f~~~~  211 (213)
T 3d54_D          194 LIGGEDGKKVFQSILNYL  211 (213)
T ss_dssp             TTTCSTTSHHHHHHHHHC
T ss_pred             hhhcCccHHHHHHHHHHh
Confidence               467899999999875

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=2.4e-28  Score=178.47  Aligned_cols=137  Identities=18%  Similarity=0.282  Sum_probs=98.3

Q ss_pred             CCCEEEeCCCCCCCCCcch----hHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccC-----
Q 030626           13 NPRGVLISPGPGAPQDSGI----SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK-----   83 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~----~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~-----   83 (174)
                      ++|||||+||++++++...    +.+.++  ..++|+||||+|||+|+.++||++....  ...+....  ....     
T Consensus        37 ~~dglil~GG~~~~~~~~~~~~~~~~~i~--~~~~PilGIC~G~Qll~~~~gg~~~~lg--~~~~~~~~--~~~~~~~~~  110 (186)
T 2ywj_A           37 GIDALIIPGGESTAIGKLMKKYGLLEKIK--NSNLPILGTCAGMVLLSKGTGINQILLE--LMDITVKR--NAYGRQVDS  110 (186)
T ss_dssp             TCSEEEECCSCHHHHHHHHHHTTHHHHHH--TCCCCEEEETHHHHHHSSCCSSCCCCCC--CSSEEEET--TTTCSSSCC
T ss_pred             cCCEEEECCCCchhhhhhhhccCHHHHHH--hcCCcEEEECHHHHHHHHHhCCCcCccC--CCceeEEe--ccCCCcccc
Confidence            5899999999886653211    233343  6789999999999999999999853221  11111000  0000     


Q ss_pred             -CCCCcccCCCCceeecccccceecccCCC-CCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHH
Q 030626           84 -GEDGLLAGLSNPFTAGRYHSLVIEKESFP-SDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI  161 (174)
Q Consensus        84 -~~~~l~~~~~~~~~~~~~H~~~v~~~~l~-~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~  161 (174)
                       ..+.++.++ +.+.++++|++.+..   + +++++++|++ |+.++|++.+   +++|+|||||++.  ++.+||++|+
T Consensus       111 ~~~~~~~~~~-~~~~~~~~H~~~v~~---l~~~~~~v~a~s-d~~~~a~~~~---~~~gvQfHPE~~~--~g~~l~~~F~  180 (186)
T 2ywj_A          111 FEKEIEFKDL-GKVYGVFIRAPVVDK---ILSDDVEVIARD-GDKIVGVKQG---KYMALSFHPELSE--DGYKVYKYFV  180 (186)
T ss_dssp             EEEEEEETTT-EEEEEEESSCCEEEE---ECCTTCEEEEEE-TTEEEEEEET---TEEEESSCGGGST--THHHHHHHHH
T ss_pred             eecccccccC-CcEEEEEEecceeee---cCCCCeEEEEEE-CCEEEEEeeC---CEEEEECCCCcCC--chhHHHHHHH
Confidence             012355555 567889999999975   5 7899999999 7889999864   5999999999753  5899999999


Q ss_pred             HHHH
Q 030626          162 KMIV  165 (174)
Q Consensus       162 ~~~~  165 (174)
                      +.+.
T Consensus       181 ~~~~  184 (186)
T 2ywj_A          181 ENCV  184 (186)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            9864

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=99.94  E-value=1.5e-27  Score=197.54  Aligned_cols=158  Identities=19%  Similarity=0.248  Sum_probs=109.0

Q ss_pred             cCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcc--cc--cccceeEecc----
Q 030626           12 KNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV--MH--GKSSLVYYDE----   82 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~--~~--~~~~~~~~~~----   82 (174)
                      .++|||||+||+|++...+ .++.++. +..++|+||||+|||+|+.++||++..++...  +.  +...++....    
T Consensus       342 ~~~DGIilsGGpg~~~~~g-~~~~i~~a~~~~~PiLGIClG~Qll~va~Gg~v~~l~~a~s~E~~~~~~hpvi~l~~~w~  420 (545)
T 1s1m_A          342 KGLDAILVPGGFGYRGVEG-MITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWR  420 (545)
T ss_dssp             TTCSEEEECCCCSSTTHHH-HHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCC
T ss_pred             hcCCEEEECCCCCCccchh-hHHHHHHHHHCCCcEEEECChHHHHHHHhCCceecCCCCcccccCCCCCCceEEeecccc
Confidence            3699999999999876433 3344443 45679999999999999999999998654221  11  1111111100    


Q ss_pred             ---------------------------CCCCCcccCCCCc--eeecccccceeccc---CCCCCCcEEEEEcCCC-ceEE
Q 030626           83 ---------------------------KGEDGLLAGLSNP--FTAGRYHSLVIEKE---SFPSDALEVTAWTEDG-LIMA  129 (174)
Q Consensus        83 ---------------------------~~~~~l~~~~~~~--~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~-~i~a  129 (174)
                                                 ..+++++..+...  ....+.|.|.|+..   .+.+.+++++|++.|+ .+++
T Consensus       421 ~~~g~~~~q~~~~~~ggtmrlG~~~v~l~~~s~l~~iyg~~~v~e~h~Hry~VNs~~~~~l~~~gl~v~a~s~dg~~VEa  500 (545)
T 1s1m_A          421 DENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEI  500 (545)
T ss_dssp             CTTSCCC----------CCEEEEEEEEECTTCHHHHHTTSSEEEEEEEECCEECHHHHHHHHHTTCEEEEECSSSCCEEE
T ss_pred             cccccccccccccccCccccccceeeEeccCCHHHHhcCCceEEEecCcceEEChHHhhhcccCCeEEEEECCCCCceEE
Confidence                                       0122223222222  23456777877542   2224799999999998 7999


Q ss_pred             EeeCCCCceEEEecCCCCcCCCc-hHHHHHHHHHHHHHHHHh
Q 030626          130 ARHKKYKHLQGVQFHPESIITTE-GKTIVRNFIKMIVRKEAA  170 (174)
Q Consensus       130 ~~~~~~~~~~g~QfHPE~~~~~~-~~~l~~~f~~~~~~~~~~  170 (174)
                      +++.++|+++|+|||||+.+++. +.+||++|++++.+.+..
T Consensus       501 ie~~~~p~flGVQFHPE~~~~p~~g~~LF~~Fv~aa~~~~~~  542 (545)
T 1s1m_A          501 IEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKR  542 (545)
T ss_dssp             EECTTSSSEEEESSCGGGTCCTTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCEEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhh
Confidence            99999886669999999988874 899999999998876543

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=99.94  E-value=2e-27  Score=197.03  Aligned_cols=155  Identities=19%  Similarity=0.207  Sum_probs=105.5

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCc--ccc--cccceeEe-cc----
Q 030626           13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG--VMH--GKSSLVYY-DE----   82 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~--~~~--~~~~~~~~-~~----   82 (174)
                      ++|||||+||+|++...+. ++.++. +..++|+||||+|||+|+.++||++..+...  .+.  +...++.. ..    
T Consensus       355 ~~DGIILpGGfGd~~~~g~-i~~ir~a~e~~iPiLGICLGmQlL~~a~Gg~v~~l~~~~s~E~~~~~~hpvi~~~~~q~~  433 (550)
T 1vco_A          355 DVSGILVPGGFGVRGIEGK-VRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLE  433 (550)
T ss_dssp             TCSCEEECCCCSSTTHHHH-HHHHHHHHHTTCCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGC
T ss_pred             cCCEEEECCCCCCcchhhh-HHHHHHHHHCCCcEEEECcCHHHHHHHhCcccccCCccccccccCCCCCCeEEecccccc
Confidence            6899999999998865433 344443 4578999999999999999999988765421  011  11111110 00    


Q ss_pred             ----------------CCCCCcccCCCC--ceeecccccceeccc---CCCCCCcEEEEEcCCC------ceEEEeeCCC
Q 030626           83 ----------------KGEDGLLAGLSN--PFTAGRYHSLVIEKE---SFPSDALEVTAWTEDG------LIMAARHKKY  135 (174)
Q Consensus        83 ----------------~~~~~l~~~~~~--~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~------~i~a~~~~~~  135 (174)
                                      ..+++++..+..  .....+.|.|.|+..   .+...+++++|++.++      .+++++++++
T Consensus       434 i~~~ggtmrlG~~~v~i~~~s~l~~iy~~~~v~e~h~H~Y~Vns~~~~~l~~~gl~v~a~s~dG~g~~~~~VeaIe~~~~  513 (550)
T 1vco_A          434 VEGLGGTMRLGDWPMRIKPGTLLHRLYGKEEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDH  513 (550)
T ss_dssp             C---CCCCEEEEEEEEECTTSHHHHHHCCSEEEEEEEESEEECHHHHHHHHHHTEEEEEECCCBTTBSTTCEEEEEETTS
T ss_pred             ccccCCcccccceEEEEccCchhhHhcCCceeeeeccceEEEchHHhhccccCCeEEEEEeCCCCccCCCcEEEEEeCCC
Confidence                            012233332221  122466788887542   2223689999999884      7999999988


Q ss_pred             CceEEEecCCCCcCCCc-hHHHHHHHHHHHHHHH
Q 030626          136 KHLQGVQFHPESIITTE-GKTIVRNFIKMIVRKE  168 (174)
Q Consensus       136 ~~~~g~QfHPE~~~~~~-~~~l~~~f~~~~~~~~  168 (174)
                      |.++|+|||||+.+++. +.+||++|++++.+.+
T Consensus       514 p~fvGVQFHPE~~~~p~~g~~LF~~Fv~aa~~~~  547 (550)
T 1vco_A          514 PFFLGLQSHPEFKSRPMRPSPPFVGFVEAALAYQ  547 (550)
T ss_dssp             SSEEEESSCGGGGCBTTBCCHHHHHHHHHHHHHT
T ss_pred             CEEEEEEeCCccCCCCCChHHHHHHHHHHHHhhc
Confidence            84459999999987774 8999999999987643

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=99.94  E-value=4e-27  Score=192.66  Aligned_cols=152  Identities=19%  Similarity=0.291  Sum_probs=104.0

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCC--ccccc--ccceeEe-------
Q 030626           13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPL--GVMHG--KSSLVYY-------   80 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~--~~~~~--~~~~~~~-------   80 (174)
                      ++||||++||+++....+ .++.++. +.+++|+||||+|||+|+.++||++.....  ..+..  ...++..       
T Consensus       350 ~~DgIIlpGG~G~~~~~g-~i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~g~qda~s~Ef~~~~~~pvI~~m~eq~~  428 (535)
T 3nva_A          350 NVNGIIVLPGFGSRGAEG-KIKAIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEANSTEINPNTKDPVITLLDEQKN  428 (535)
T ss_dssp             SCSEEEECCCCSSTTHHH-HHHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTTCCTTCEETTTCTTCSCEEEECBCSSSC
T ss_pred             CCCEEEECCCCCCccHHH-HHHHHHHHHHcCCcEEEECcchhHHHHHhhccccCccCCcccccCCCCCCCeeecchhccc
Confidence            689999999998864333 3344543 567899999999999999999999954331  11110  0011100       


Q ss_pred             --------------ccCCCCCcccCC-C-Cceeecccccceecc---cCCCCCCcEEEEEcCCCceEEEeeCCCCceEEE
Q 030626           81 --------------DEKGEDGLLAGL-S-NPFTAGRYHSLVIEK---ESFPSDALEVTAWTEDGLIMAARHKKYKHLQGV  141 (174)
Q Consensus        81 --------------~~~~~~~l~~~~-~-~~~~~~~~H~~~v~~---~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~  141 (174)
                                    ....+.+++..+ . +.+...+.|+|.|++   +.+.+.+++++|+++|+.|+|++++++|+++|+
T Consensus       429 ~~~~ggtmrlg~h~v~l~~gS~L~~iyG~~~I~erHrHryeVNs~h~q~l~~~GL~vsA~s~DG~IEAIE~~~~pf~vGV  508 (535)
T 3nva_A          429 VTQLGGTMRLGAQKIILKEGTIAYQLYGKKVVYERHRHRYEVNPKYVDILEDAGLVVSGISENGLVEIIELPSNKFFVAT  508 (535)
T ss_dssp             BCSSCCCCEEEEEEEEECTTSHHHHHHTSSEEEEEEEECCEECHHHHHHHHHTTCEEEEECTTCCEEEEECTTSSCEEEE
T ss_pred             ccccCCccccCceEEEEcCCCcHHHHhCCCeeeecccccceechHHHhhcccCCeEEEEEeCCCCEEEEEeCCCCcEEEE
Confidence                          000122222221 2 234445667777753   123357999999999999999999999888999


Q ss_pred             ecCCCCcCCC-chHHHHHHHHHHHH
Q 030626          142 QFHPESIITT-EGKTIVRNFIKMIV  165 (174)
Q Consensus       142 QfHPE~~~~~-~~~~l~~~f~~~~~  165 (174)
                      |||||+.+++ .+.+||++|++++.
T Consensus       509 QfHPE~~~~p~~~~~LF~~Fv~Aa~  533 (535)
T 3nva_A          509 QAHPEFKSRPTNPSPIYLGFIRAVA  533 (535)
T ss_dssp             SSCGGGGCCSSSCCHHHHHHHHHHT
T ss_pred             EeCCEecCCCCChhHHHHHHHHHHH
Confidence            9999998776 48899999999874

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=99.92  E-value=6.1e-27  Score=172.96  Aligned_cols=143  Identities=19%  Similarity=0.183  Sum_probs=94.2

Q ss_pred             cCCCEEEeCCCCCCCCCcch------hHHHHHH-cCCCCcEEeehHhHHHHHHHhC--CeeccCCCcccccccceeE---
Q 030626           12 KNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMGLQCIGEAFG--GKIVRSPLGVMHGKSSLVY---   79 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~~~~~------~~~~i~~-~~~~~PilGIC~G~Qll~~~~g--g~v~~~~~~~~~~~~~~~~---   79 (174)
                      .++|+|||+|| +++.+...      ..+.+++ ...++|+||||+|||+|+.++|  |+ .+.. +...+......   
T Consensus        41 ~~~dglilpG~-g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~g~~G~-~~~l-~~~~g~v~~~~~~~  117 (201)
T 1gpw_B           41 DLYDLLFIPGV-GHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPG-VKGL-SLIEGNVVKLRSRR  117 (201)
T ss_dssp             SCCSEEEECCC-SCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTSSEETTEEE-EECC-CSSSEEEEECCCSS
T ss_pred             cCCCEEEECCC-CcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEEChhHHHHHHhhccCCC-CCCc-ceeeeEEEEcCCCC
Confidence            46899999764 55432211      2344554 4678999999999999999997  33 1111 00011100000   


Q ss_pred             eccCCCCCcccCCC-CceeecccccceecccCCCCCCcEEEEEcCC-C-ceEEEeeCCCCceEEEecCCCCcCCCchHHH
Q 030626           80 YDEKGEDGLLAGLS-NPFTAGRYHSLVIEKESFPSDALEVTAWTED-G-LIMAARHKKYKHLQGVQFHPESIITTEGKTI  156 (174)
Q Consensus        80 ~~~~~~~~l~~~~~-~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~-~-~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l  156 (174)
                      ......++++...+ +.+.++++|++.+.+   +  +++++|++++ + .+++++.++  +++|+|||||++ ++.+.++
T Consensus       118 ~~~~g~~~l~~~~~~~~~~v~~~H~~~v~~---~--~~~vla~s~~~g~~~~a~~~~~--~i~gvQfHPE~~-~~~~~~l  189 (201)
T 1gpw_B          118 LPHMGWNEVIFKDTFPNGYYYFVHTYRAVC---E--EEHVLGTTEYDGEIFPSAVRKG--RILGFQFHPEKS-SKIGRKL  189 (201)
T ss_dssp             CSEEEEEEEEESSSSCCEEEEEEESEEEEE---C--GGGEEEEEEETTEEEEEEEEET--TEEEESSCGGGS-HHHHHHH
T ss_pred             CCcccceeeEeccCCCCCeEEEECcceecc---C--CCEEEEEEccCCceEEEEEECC--CEEEEECCCccc-CHhHHHH
Confidence            00000023333333 467899999999975   3  7899999876 5 799999875  499999999996 6678899


Q ss_pred             HHHHHHHHH
Q 030626          157 VRNFIKMIV  165 (174)
Q Consensus       157 ~~~f~~~~~  165 (174)
                      |++|++.+.
T Consensus       190 ~~~f~~~~~  198 (201)
T 1gpw_B          190 LEKVIECSL  198 (201)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHHhh
Confidence            999998764

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=99.92  E-value=2.4e-25  Score=163.82  Aligned_cols=141  Identities=22%  Similarity=0.363  Sum_probs=95.7

Q ss_pred             CCCEEEeCCCCCCCCCc----chhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccC----
Q 030626           13 NPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK----   83 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~----~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~----   83 (174)
                      ++|+|||+||+.+.++.    ..+.+.+++ ...++|+||||+|+|+|+.++|+++.+.. +...+....  ....    
T Consensus        38 ~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC~G~q~l~~~~gg~~~~~l-g~~~~~~~~--~~~g~~~~  114 (196)
T 2nv0_A           38 EVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEIAGSDNPHL-GLLNVVVER--NSFGRQVD  114 (196)
T ss_dssp             GCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBCCC----CCC-CCSCEEEEC--CCSCTTTS
T ss_pred             hCCEEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEECHHHHHHHHHhcCCCCCcc-cCCceeEec--cCCCcccc
Confidence            58999999998765432    122455554 46789999999999999999999764322 111110000  0000    


Q ss_pred             --CCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHH
Q 030626           84 --GEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI  161 (174)
Q Consensus        84 --~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~  161 (174)
                        ..+..+.+++.++.++++|++.+..   ++++++++|++ ++.+++++..   +++|+|||||++..   ..++++|+
T Consensus       115 ~~~~~~~~~~~g~~~~~~~~h~~~v~~---~~~~~~v~a~~-d~~~~a~~~~---~~~gvQfHPE~~~~---~~l~~~fl  184 (196)
T 2nv0_A          115 SFEADLTIKGLDEPFTGVFIRAPHILE---AGENVEVLSEH-NGRIVAAKQG---QFLGCSFHPELTED---HRVTQLFV  184 (196)
T ss_dssp             EEEEEECCTTCSSCEEEEEESCCEEEE---ECTTCEEEEEE-TTEEEEEEET---TEEEESSCTTSSSC---CHHHHHHH
T ss_pred             cccCCcccccCCCceEEEEEecceecc---cCCCcEEEEEE-CCEEEEEEEC---CEEEEEECCccCCc---hHHHHHHH
Confidence              0123445566678888999998865   56889999998 6778999874   59999999998532   58999999


Q ss_pred             HHHHH
Q 030626          162 KMIVR  166 (174)
Q Consensus       162 ~~~~~  166 (174)
                      +.+.+
T Consensus       185 ~~~~~  189 (196)
T 2nv0_A          185 EMVEE  189 (196)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98865

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=99.92  E-value=7.7e-26  Score=169.27  Aligned_cols=146  Identities=19%  Similarity=0.313  Sum_probs=99.2

Q ss_pred             CCCEEEeCCCCCCCCCc----chhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEe--ccC--
Q 030626           13 NPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYY--DEK--   83 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~----~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~--~~~--   83 (174)
                      ++|+|||+||+++..+.    ....+.+++ ...++||||||+|+|+|+.++|+++.+.. +...+.......  ...  
T Consensus        60 ~~Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~~gg~~~~~l-g~~~~~~~~~~~g~~~~~~  138 (219)
T 1q7r_A           60 GLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKRIVGYDEPHL-GLMDITVERNSFGRQRESF  138 (219)
T ss_dssp             TCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEEEESSCCCCC-CCEEEEEECHHHHCCCCCE
T ss_pred             hCCEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCCCcCCc-CccceEEEecCCCccccce
Confidence            68999999998755431    112345554 46789999999999999999999874322 110000000000  000  


Q ss_pred             CCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHH
Q 030626           84 GEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM  163 (174)
Q Consensus        84 ~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~  163 (174)
                      ..+..+.+++..+.++++|++.+..   ++++++++|++ |+.+++++..   +++|+|||||+...   ..++++|++.
T Consensus       139 ~~~~~~~g~g~~~~~~~~h~~~v~~---l~~~~~v~a~s-dg~~ea~~~~---~i~GvQfHPE~~~~---~~l~~~fl~~  208 (219)
T 1q7r_A          139 EAELSIKGVGDGFVGVFIRAPHIVE---AGDGVDVLATY-NDRIVAARQG---QFLGCSFHPELTDD---HRLMQYFLNM  208 (219)
T ss_dssp             EEEEEETTTEEEEEEEESSCCEEEE---ECTTCEEEEEE-TTEEEEEEET---TEEEESSCGGGSSC---CHHHHHHHHH
T ss_pred             ecCcccCCCCCceEEEEEecceeec---cCCCcEEEEEc-CCEEEEEEEC---CEEEEEECcccCCC---HHHHHHHHHH
Confidence            0012234454567788899998875   56899999998 7889999874   59999999998532   5899999999


Q ss_pred             HHHHHH
Q 030626          164 IVRKEA  169 (174)
Q Consensus       164 ~~~~~~  169 (174)
                      +.+.+.
T Consensus       209 ~~~~~~  214 (219)
T 1q7r_A          209 VKEAKM  214 (219)
T ss_dssp             HHHHHH
T ss_pred             HHHhhh
Confidence            876543

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.91  E-value=7.1e-25  Score=160.51  Aligned_cols=137  Identities=20%  Similarity=0.306  Sum_probs=91.4

Q ss_pred             CCCEEEeCCCCCCCCCc----chhHHHHHH-cCCC-CcEEeehHhHHHHHHHhCC-eeccCCCccccccc-------cee
Q 030626           13 NPRGVLISPGPGAPQDS----GISLQTVLE-LGPT-VPLFGVCMGLQCIGEAFGG-KIVRSPLGVMHGKS-------SLV   78 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~----~~~~~~i~~-~~~~-~PilGIC~G~Qll~~~~gg-~v~~~~~~~~~~~~-------~~~   78 (174)
                      ++|||||+||+....+.    ..+.+.+++ ...+ +|+||||+|||+|+.++|+ ++.+.. +...+..       ...
T Consensus        39 ~~dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~~~gg~~~~~~l-g~~~~~~~~~~~g~~~~  117 (191)
T 2ywd_A           39 GLKALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCAGAIWLAKEIVGYPEQPRL-GVLEAWVERNAFGRQVE  117 (191)
T ss_dssp             TCSEEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETHHHHHHEEEETTCTTCCCC-CCEEEEEETTCSCCSSS
T ss_pred             cCCEEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEEECHHHHHHHHHhCCCCCCccc-cccceEEEcCCcCCccc
Confidence            58999999995332111    123445554 4567 9999999999999999998 543221 1100000       000


Q ss_pred             EeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHH
Q 030626           79 YYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVR  158 (174)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~  158 (174)
                      .+.   .+..+.++ ..+.++++|++.+..   ++++++++|++ ++.+++++.+   +++|+|||||++.  ++ .+++
T Consensus       118 ~~~---~~~~~~~~-~~~~~~~~Hs~~v~~---l~~~~~~~a~~-~~~~~a~~~~---~~~gvQfHPE~~~--~~-~l~~  183 (191)
T 2ywd_A          118 SFE---EDLEVEGL-GSFHGVFIRAPVFRR---LGEGVEVLARL-GDLPVLVRQG---KVLASSFHPELTE--DP-RLHR  183 (191)
T ss_dssp             EEE---EEEEETTT-EEEEEEEESCCEEEE---ECTTCEEEEEE-TTEEEEEEET---TEEEESSCGGGSS--CC-HHHH
T ss_pred             ccc---ccccccCC-CceeEEEEcccceec---cCCCcEEEEEE-CCEEEEEEEC---CEEEEEeCCCCCC--Cc-HHHH
Confidence            000   01223334 456778899998865   56789999999 5889999975   3999999999753  33 9999


Q ss_pred             HHHHHH
Q 030626          159 NFIKMI  164 (174)
Q Consensus       159 ~f~~~~  164 (174)
                      +|++.+
T Consensus       184 ~f~~~~  189 (191)
T 2ywd_A          184 YFLELA  189 (191)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999876

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=99.91  E-value=3.1e-25  Score=163.76  Aligned_cols=136  Identities=20%  Similarity=0.235  Sum_probs=91.6

Q ss_pred             CCCEEEeCCCCCCCCCc------chhHHHHHH-cCCCCcEEeehHhHHHHHHH---hC---------CeeccCCC-cccc
Q 030626           13 NPRGVLISPGPGAPQDS------GISLQTVLE-LGPTVPLFGVCMGLQCIGEA---FG---------GKIVRSPL-GVMH   72 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~------~~~~~~i~~-~~~~~PilGIC~G~Qll~~~---~g---------g~v~~~~~-~~~~   72 (174)
                      ++|+|||+| ++++.+.      ....+.+++ ...++|+||||+|+|+|+.+   +|         +++.+... ...+
T Consensus        40 ~~d~lil~G-~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~~~~Gg~~~l~~~~g~v~~~~~~~~~~  118 (200)
T 1ka9_H           40 EADLLVLPG-QGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQ  118 (200)
T ss_dssp             SCSEEEECC-CSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECCSSSSSE
T ss_pred             cCCEEEECC-CCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcHHHHHHHHhccccCCcCCccccccEEEECCCCCCCc
Confidence            689999966 4543221      223455554 46789999999999999999   67         66655531 1112


Q ss_pred             cccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCC-C-ceEEEeeCCCCceEEEecCCCCcCC
Q 030626           73 GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED-G-LIMAARHKKYKHLQGVQFHPESIIT  150 (174)
Q Consensus        73 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~-~-~i~a~~~~~~~~~~g~QfHPE~~~~  150 (174)
                      ..|..+...   + + |.++++ ..++++|++.+ +   .+++ .+ |++++ + .++++...+  +++|+|||||+.. 
T Consensus       119 ~G~~~v~~~---~-~-l~~~~~-~~~~~~Hs~~~-~---~~~~-~v-a~s~~~g~~~~~~~~~~--~i~gvQfHPE~~~-  183 (200)
T 1ka9_H          119 MGWNALEFG---G-A-FAPLTG-RHFYFANSYYG-P---LTPY-SL-GKGEYEGTPFTALLAKE--NLLAPQFHPEKSG-  183 (200)
T ss_dssp             EEEEECEEC---G-G-GGGGTT-CEEEEEESEEC-C---CCTT-CC-EEEEETTEEEEEEEECS--SEEEESSCTTSSH-
T ss_pred             eeEEEEEec---h-h-hhcCCC-CCEEEeccccc-C---CCCC-cE-EEEEeCCeEEEEEEeeC--CEEEEecCCCcCc-
Confidence            223333333   1 3 777766 77889999999 5   3333 56 87776 5 678877765  5999999999964 


Q ss_pred             CchHHHH---HHHHHHH
Q 030626          151 TEGKTIV---RNFIKMI  164 (174)
Q Consensus       151 ~~~~~l~---~~f~~~~  164 (174)
                      +.+.+||   +||++.|
T Consensus       184 ~~g~~l~~~~~~F~~~~  200 (200)
T 1ka9_H          184 KAGLAFLALARRYFEVL  200 (200)
T ss_dssp             HHHHHHHHHHHHHC---
T ss_pred             cchhHHHHHHHHHHhhC
Confidence            6788999   9998754

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=99.90  E-value=1.9e-24  Score=160.44  Aligned_cols=136  Identities=16%  Similarity=0.223  Sum_probs=90.9

Q ss_pred             CCCEEEeCCCCCCCCCc----chhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccC----
Q 030626           13 NPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK----   83 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~----~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~----   83 (174)
                      ++|+|||+||+.+.++.    ..+.+.+++ ...++|+||||+|+|+|+.++|+...+..     |.. +..+...    
T Consensus        57 ~~d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~l-----g~~-~~~v~~~~~g~  130 (208)
T 2iss_D           57 MVDGLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATCAGVILLAKRIKNYSQEKL-----GVL-DITVERNAYGR  130 (208)
T ss_dssp             GCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHEEEEC---CCCC-----CCE-EEEEETTTTCS
T ss_pred             hCCEEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEECHHHHHHHHHcCCCCCCCc-----ccc-ceEEEecCCCc
Confidence            68999999985433321    113355554 46789999999999999999998532211     110 0000000    


Q ss_pred             -----CCCCcccCCC-CceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHH
Q 030626           84 -----GEDGLLAGLS-NPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIV  157 (174)
Q Consensus        84 -----~~~~l~~~~~-~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~  157 (174)
                           ..+..+.+++ +++.++++|++.+..   ++++++++|.+ ++.+++++..   +++|+|||||+...   ..++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~---~~~~~~v~a~~-d~~~~a~~~~---~i~GvQfHPE~~~~---~~l~  200 (208)
T 2iss_D          131 QVESFETFVEIPAVGKDPFRAIFIRAPRIVE---TGKNVEILATY-DYDPVLVKEG---NILACTFHPELTDD---LRLH  200 (208)
T ss_dssp             GGGCEEEEECCGGGCSSCEEEEESSCCEEEE---ECSSCEEEEEE-TTEEEEEEET---TEEEESSCGGGSSC---CHHH
T ss_pred             ccccccCCcccccCCCCceEEEEEeCccccc---CCCCcEEEEEE-CCEEEEEEEC---CEEEEEeCCCcCCc---HHHH
Confidence                 0123344554 568888899998875   56789999998 5889999864   49999999998543   3899


Q ss_pred             HHHHHHH
Q 030626          158 RNFIKMI  164 (174)
Q Consensus       158 ~~f~~~~  164 (174)
                      ++|++.+
T Consensus       201 ~~fl~~~  207 (208)
T 2iss_D          201 RYFLEMV  207 (208)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHHh
Confidence            9999754

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=99.88  E-value=3.6e-23  Score=155.48  Aligned_cols=150  Identities=16%  Similarity=0.172  Sum_probs=97.1

Q ss_pred             HHHHhcCCCEEEeCCCCCCCCCc------chhHHHHHH-cCC-CCcEEeehHhHHHHHHHhCCeeccCC--Ccccccccc
Q 030626            7 VSYCRKNPRGVLISPGPGAPQDS------GISLQTVLE-LGP-TVPLFGVCMGLQCIGEAFGGKIVRSP--LGVMHGKSS   76 (174)
Q Consensus         7 ~~~~~~~~dgiii~GG~~~~~~~------~~~~~~i~~-~~~-~~PilGIC~G~Qll~~~~gg~v~~~~--~~~~~~~~~   76 (174)
                      +++.  ++|+|||+||+.+..+.      ..+.+.+++ ... ++||||||+|||+|+.++|+++....  .....|.. 
T Consensus        39 ~~l~--~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~~~~~~~~lG~~-  115 (227)
T 2abw_A           39 HDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGL-  115 (227)
T ss_dssp             HHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCE-
T ss_pred             cccc--cCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHHhcCCccccccccccccCce-
Confidence            4453  58999999997544321      123445554 456 89999999999999999999763310  00112221 


Q ss_pred             eeEeccCC---------CCCcccCC----CCceeecccccceecccCCC-CCCcEEEEEcC-----CCceEEEeeCCCCc
Q 030626           77 LVYYDEKG---------EDGLLAGL----SNPFTAGRYHSLVIEKESFP-SDALEVTAWTE-----DGLIMAARHKKYKH  137 (174)
Q Consensus        77 ~~~~~~~~---------~~~l~~~~----~~~~~~~~~H~~~v~~~~l~-~~~~~~~a~s~-----~~~i~a~~~~~~~~  137 (174)
                      ++.+....         .+..+.++    +..+..++.|++.+..   . +++++++|+++     ++.+++++..   +
T Consensus       116 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~h~~~v~~---~~~~~~~vla~~~~~~~g~~~~~a~~~~---~  189 (227)
T 2abw_A          116 DITICRNFYGSQNDSFICSLNIISDSSAFKKDLTAACIRAPYIRE---ILSDEVKVLATFSHESYGPNIIAAVEQN---N  189 (227)
T ss_dssp             EEEEECCC----CCEEEEECEECCCCTTCCTTCEEEEESCCEEEE---ECCTTCEEEEEEEETTTEEEEEEEEEET---T
T ss_pred             eEEEEecCCCccccccccccccccccccCCCceeEEEEEcceEee---cCCCCcEEEEEcccccCCCCceEEEEEC---C
Confidence            11111000         01112222    2456667788888765   4 68899999986     6778898864   5


Q ss_pred             eEEEecCCCCcCCCchHHHHHHHHHHHHHHH
Q 030626          138 LQGVQFHPESIITTEGKTIVRNFIKMIVRKE  168 (174)
Q Consensus       138 ~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~~  168 (174)
                      ++|+|||||++..   ..++++|++.+.+..
T Consensus       190 v~gvQfHPE~~~~---~~l~~~Fl~~~~~~~  217 (227)
T 2abw_A          190 CLGTVFHPELLPH---TAFQQYFYEKVKNYK  217 (227)
T ss_dssp             EEEESSCGGGSSC---CHHHHHHHHHHHHHH
T ss_pred             EEEEEECCeeCCC---cHHHHHHHHHHHhhh
Confidence            9999999998532   489999999886543

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=99.87  E-value=4.5e-22  Score=154.46  Aligned_cols=136  Identities=15%  Similarity=0.014  Sum_probs=96.7

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcc--hhH----HHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCccccccccee
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSG--ISL----QTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLV   78 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~--~~~----~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~   78 (174)
                      ++++...++||+||+|||....+..  .++    +.+.. ..+.+|+||||+|+|+++.+++|...........|.... 
T Consensus        92 f~~~~~~~~DglIITGap~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~~~-  170 (301)
T 2vdj_A           92 FRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKMFGVFEH-  170 (301)
T ss_dssp             HHHHTTSCEEEEEECCCTTTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEE-
T ss_pred             cccccccccCEEEECCCCCcCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCccccCCCCEEEEEEE-
Confidence            4455556799999999998665432  222    22222 357899999999999977777763333322334555433 


Q ss_pred             EeccCCCCCcccCCCCceeeccccc-----ceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCc
Q 030626           79 YYDEKGEDGLLAGLSNPFTAGRYHS-----LVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESI  148 (174)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~H~-----~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~  148 (174)
                      ... ...++++.++++.+.+.++|+     +.|..   + ++++++|.|+.+.++++..++. +++++|||||+.
T Consensus       171 ~~~-~~~~pL~~g~~~~f~~phsr~~~~~~~~v~~---~-pga~vLA~S~~~~~~~~~~~~~-~~~~vQgHpEyd  239 (301)
T 2vdj_A          171 EVR-EQHVKLLQGFDELFFAVHSRHTEVRESDIRE---V-KELTLLANSEEAGVHLVIGQEG-RQVFALGHSEYS  239 (301)
T ss_dssp             EEC-CSSCGGGTTCCSEEEEEEEEEEECCHHHHHT---C-TTEEEEEEETTTEEEEEEEGGG-TEEEECSCTTCC
T ss_pred             Eec-CCCCccccCCCCceEeeeEeccCcCHHHccC---C-CCCEEEEeCCCCcceEEEecCC-CEEEEECCCCCC
Confidence            222 357899999999998888754     44543   3 4999999999999999998654 499999999984

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=99.86  E-value=3.4e-22  Score=155.56  Aligned_cols=136  Identities=16%  Similarity=0.044  Sum_probs=94.6

Q ss_pred             HHhcCCCEEEeCCCCCCCCCcc--hhH----HHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEec
Q 030626            9 YCRKNPRGVLISPGPGAPQDSG--ISL----QTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD   81 (174)
Q Consensus         9 ~~~~~~dgiii~GG~~~~~~~~--~~~----~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~   81 (174)
                      +...++||+||+|||....+..  .++    +.+.. ....+|+||||+|+|+++.+++|...........|.... ...
T Consensus       107 ~~~~~~DglIITGsP~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~~~-~~~  185 (312)
T 2h2w_A          107 VKDRKFDGFIITGAPVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELPQKLSGVYKH-RVA  185 (312)
T ss_dssp             TTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEE-EES
T ss_pred             ccccCcCEEEECCCCCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCCCCEEEEEEE-EEc
Confidence            3345799999999998665432  222    22222 357899999999999988777774433332334555443 333


Q ss_pred             cCCCCCcccCCCCceeecccccceecccCC-CCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCc
Q 030626           82 EKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESI  148 (174)
Q Consensus        82 ~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~  148 (174)
                      .  .++++.++++.+.+.++|+..+..+.+ ..++++++|.|+.+.+++++.++. +++++|||||+.
T Consensus       186 ~--~~pL~~g~~~~f~vphsr~~e~~~~~v~~~pga~vLA~S~~~~~q~~~~~~~-~~~~vQgHPEyd  250 (312)
T 2h2w_A          186 K--DSVLFRGHDDFFWAPHSRYTEVKKEDIDKVPELEILAESDEAGVYVVANKSE-RQIFVTGHPEYD  250 (312)
T ss_dssp             S--CCGGGTTCCSEEEEEEEEEEECCHHHHTTCC-CEEEEEETTTEEEEEECSSS-SEEEECSCTTCC
T ss_pred             C--CCccccCCCCceEeeEEeccccCHHHccCCCCCEEEEcCCCCcceEEEecCC-CEEEEECCCCCC
Confidence            2  788999999999998875544322111 125999999999999999998664 499999999984

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=99.85  E-value=5.2e-23  Score=172.23  Aligned_cols=142  Identities=20%  Similarity=0.164  Sum_probs=96.7

Q ss_pred             CCCEEEeCCCCCCCCCcc------hhHHHHHH-cCCCCcEEeehHhHHHHHHHh------------CCeeccCCC---cc
Q 030626           13 NPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVPLFGVCMGLQCIGEAF------------GGKIVRSPL---GV   70 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~------~~~~~i~~-~~~~~PilGIC~G~Qll~~~~------------gg~v~~~~~---~~   70 (174)
                      ++|||||+|| |++....      ...+.+++ ...++|+||||+|||+|+.++            |+++.+...   ..
T Consensus        44 ~~DglILpGg-G~~~~~~~~l~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a~~egg~~~~Lg~lgg~v~~~~~~~~~~  122 (555)
T 1jvn_A           44 GTSRLILPGV-GNYGHFVDNLFNRGFEKPIREYIESGKPIMGIXVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKPV  122 (555)
T ss_dssp             TCSCEEEEEC-SCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEEEHHHHTTEEEETTBTTCCCCCSEEEEEEECCTTTSCS
T ss_pred             cCCEEEECCC-CchHhHhhhhhhccHHHHHHHHHHcCCcEEEEchhhhhhhhhhhcCCCccccCCCCcEEEECCcCCCCC
Confidence            6899999763 3332211      12344554 467899999999999999998            677766531   11


Q ss_pred             cccccceeEeccCCCCCcccCCCCceeecccccceecccC----CCCCCcEEEEEcC---CCceEEEeeCCCCceEEEec
Q 030626           71 MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKES----FPSDALEVTAWTE---DGLIMAARHKKYKHLQGVQF  143 (174)
Q Consensus        71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~----l~~~~~~~~a~s~---~~~i~a~~~~~~~~~~g~Qf  143 (174)
                      .+..|..+..   . +++|.++++.+.++++|++.+....    ++++++.++|+++   |+.+++++..   +++|+||
T Consensus       123 ~~~G~~~v~~---~-~~L~~~l~~~~~~~~vHS~~~~~i~~~~~~L~~g~~vlA~s~~~~D~~i~ai~~~---~i~GvQF  195 (555)
T 1jvn_A          123 PEIGWNSCIP---S-ENLFFGLDPYKRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNKN---NIFATQF  195 (555)
T ss_dssp             SEEEEECCCC---C-TTCCTTCCTTSCEEEEESEECBCCHHHHHHHHHTTCEEEEEEETTEEEEEEEEET---TEEEESS
T ss_pred             ccccceEEEE---c-CHHHhhCCCCceEEEEEEEEEEecccccccCCCCCEEEEEEcCCCCCeEEEEEeC---CEEEEEe
Confidence            1222322222   2 7899988876677788888875411    1135688888886   4578999842   5999999


Q ss_pred             CCCCcCCCchHHHHHHHHHH
Q 030626          144 HPESIITTEGKTIVRNFIKM  163 (174)
Q Consensus       144 HPE~~~~~~~~~l~~~f~~~  163 (174)
                      |||++ .+.+.+||++|++.
T Consensus       196 HPE~s-~~~g~~l~~~Fl~~  214 (555)
T 1jvn_A          196 HPEKS-GKAGLNVIENFLKQ  214 (555)
T ss_dssp             BGGGS-HHHHHHHHHHHHTT
T ss_pred             CcEec-ChhHHHHHHHHHhc
Confidence            99974 45678999999975

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=99.20  E-value=1e-10  Score=105.30  Aligned_cols=150  Identities=21%  Similarity=0.246  Sum_probs=91.1

Q ss_pred             CCCEEEeCCCCCCC--CCcch-----------hHHHHHH-c-CCCCcEEeehHhHHHHHHH---hCCe-----eccCCCc
Q 030626           13 NPRGVLISPGPGAP--QDSGI-----------SLQTVLE-L-GPTVPLFGVCMGLQCIGEA---FGGK-----IVRSPLG   69 (174)
Q Consensus        13 ~~dgiii~GG~~~~--~~~~~-----------~~~~i~~-~-~~~~PilGIC~G~Qll~~~---~gg~-----v~~~~~~   69 (174)
                      ++|+||++||....  -..+.           +.+.+.+ . .+++|+||||.|||+|+.+   +.|.     +.++...
T Consensus      1092 ~~d~lvlPGGfSygD~l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~~~~p~l~~N~s~ 1171 (1303)
T 3ugj_A         1092 NFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNHSD 1171 (1303)
T ss_dssp             GCSEEEECCSCGGGGTTSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTCTTCCEEECCTTS
T ss_pred             hCCEEEECCCCcchhhhccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCCCCCCeEecCCCC
Confidence            58999999995422  11111           1123443 2 5789999999999999975   3444     5555544


Q ss_pred             ccccccceeEeccCCCCCcccCCCC-ceeeccccccee---cc-c---CCCCCCcEEEEEc-------------CCC---
Q 030626           70 VMHGKSSLVYYDEKGEDGLLAGLSN-PFTAGRYHSLVI---EK-E---SFPSDALEVTAWT-------------EDG---  125 (174)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~H~~~v---~~-~---~l~~~~~~~~a~s-------------~~~---  125 (174)
                      .....|..+++. ..++++++++.. .+.++-.|+++-   .. +   .|..++..++-+.             +++   
T Consensus      1172 ~f~~r~~~~~v~-~~~s~~~~~~~g~~~~i~vaHgEG~~~~~~~~~l~~l~~~~~v~~rY~d~~g~~~~~yp~NPNGS~~ 1250 (1303)
T 3ugj_A         1172 RFEARFSLVEVT-QSPSLLLQGMVGSQMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPN 1250 (1303)
T ss_dssp             SCEEEEEEEEEC-CCSCGGGTTCTTCEEEEEEEESSCEEECSSHHHHHHHHHTTCEEEEEBCTTSCBCCSTTTSSSCCGG
T ss_pred             CeEEeCeEEEEC-CCCChhhhccCCCEEeeeeEeCCCCeeeCCHHHHHHHHhCCcEEEEEeCCCCCcccCCCCCCCCChh
Confidence            333444444444 346778888753 466666776432   11 1   1122344444442             223   


Q ss_pred             ceEEEeeCCCCceEEEecCCCCcCCC--------------chHHHHHHHHHHH
Q 030626          126 LIMAARHKKYKHLQGVQFHPESIITT--------------EGKTIVRNFIKMI  164 (174)
Q Consensus       126 ~i~a~~~~~~~~~~g~QfHPE~~~~~--------------~~~~l~~~f~~~~  164 (174)
                      .|+++.+.+++ ++|++.||||....              ...+||+|-.+++
T Consensus      1251 ~IaGi~s~~Gr-vlg~MpHPEr~~~~~~~~~~p~~~~~~~pw~~~F~na~~w~ 1302 (1303)
T 3ugj_A         1251 GITAVTTENGR-VTIMMPHPERVFRTVANSWHPENWGEDSPWMRIFRNARKQL 1302 (1303)
T ss_dssp             GEEEEECTTSS-EEEESSBGGGSSBGGGCSSCCTTCCSBCTTHHHHHHHHHHH
T ss_pred             hceEeECCCCC-EEEEcCChHHccccccccCCCcccCCCCcHHHHHHHHHHhc
Confidence            39999999875 99999999985321              2457888866654

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=97.72  E-value=8.1e-06  Score=60.86  Aligned_cols=50  Identities=10%  Similarity=0.072  Sum_probs=34.0

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcch------hHHHHHH-cCCCCcEEeehHhHHHHHHHh
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMGLQCIGEAF   59 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~------~~~~i~~-~~~~~PilGIC~G~Qll~~~~   59 (174)
                      .++|.  ++|+|+++||.  ......      +.+.|++ +.+++|++|||.|+|+|+...
T Consensus        74 ~~~l~--~ad~I~lpGG~--~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~~~l~~~~  130 (229)
T 1fy2_A           74 LAAIE--KAEIIIVGGGN--TFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPTI  130 (229)
T ss_dssp             HHHHH--HCSEEEECCSC--HHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred             HHHHh--cCCEEEECCCc--HHHHHHHHHHCChHHHHHHHHHcCCEEEEECHHHHhhcccc
Confidence            35665  47899999853  322211      3345554 457899999999999998743

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=97.69  E-value=1.8e-05  Score=57.33  Aligned_cols=47  Identities=17%  Similarity=0.311  Sum_probs=34.8

Q ss_pred             cCCCEEEeCCCCCCC--CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~~~--~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .++|+|||+||.+..  .....+.+.+++ ..+++||.|||.|.++|+.+
T Consensus        85 ~~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a  134 (193)
T 1oi4_A           85 AEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA  134 (193)
T ss_dssp             GGCSEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred             ccCCEEEECCCcCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence            368999999995521  122345566665 56789999999999999986

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.61  E-value=1.2e-05  Score=58.96  Aligned_cols=47  Identities=11%  Similarity=0.019  Sum_probs=31.9

Q ss_pred             HHHHhcCCCEEEeCCCCCCCCCcch------hHHHHHH-cCCCCcEEeehHhHHHHHH
Q 030626            7 VSYCRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMGLQCIGE   57 (174)
Q Consensus         7 ~~~~~~~~dgiii~GG~~~~~~~~~------~~~~i~~-~~~~~PilGIC~G~Qll~~   57 (174)
                      +.+.  +.|+|+++||.  ......      +.+.+++ ..+++|++|||.|+|+++.
T Consensus        75 ~~l~--~ad~I~l~GG~--~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa~~l~~  128 (206)
T 3l4e_A           75 TKLR--KNDFIYVTGGN--TFFLLQELKRTGADKLILEEIAAGKLYIGESAGAVITSP  128 (206)
T ss_dssp             HHHH--HSSEEEECCSC--HHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHHHTTSS
T ss_pred             HHHH--hCCEEEECCCC--HHHHHHHHHHCChHHHHHHHHHcCCeEEEECHHHHHhcc
Confidence            4454  47999998853  322221      2344554 5578999999999999975

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=97.60  E-value=1.8e-05  Score=56.64  Aligned_cols=52  Identities=15%  Similarity=0.069  Sum_probs=38.4

Q ss_pred             HHHHhcCCCEEEeCCCCCCCC--CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626            7 VSYCRKNPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus         7 ~~~~~~~~dgiii~GG~~~~~--~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      +++...+||+|+|+||.+...  +...+.+.+++ ..+++||.+||-|-.+|+.+
T Consensus        63 ~~v~~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~iaaIC~g~~~La~a  117 (177)
T 4hcj_A           63 SEVDAVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVAGIGSGVVIMANA  117 (177)
T ss_dssp             GGCCGGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred             HHCCHhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEEEecccHHHHHHC
Confidence            344445799999999987432  33445566665 56789999999999999875

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=97.48  E-value=2.4e-05  Score=58.30  Aligned_cols=49  Identities=14%  Similarity=0.162  Sum_probs=36.8

Q ss_pred             cCCCEEEeCCCCCC---CCC----------cchhHHHHHH-cCCCCcEEeehHhHHHHHHHhC
Q 030626           12 KNPRGVLISPGPGA---PQD----------SGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG   60 (174)
Q Consensus        12 ~~~dgiii~GG~~~---~~~----------~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~g   60 (174)
                      .++|+|||+||.+.   ..+          ...+.+.+++ ..+++||.+||-|-++|+.++.
T Consensus        89 ~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL~  151 (232)
T 1vhq_A           89 AELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFD  151 (232)
T ss_dssp             GGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred             ccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHhc
Confidence            36899999999764   222          3345566665 5678999999999999998843

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=97.47  E-value=1.9e-05  Score=55.74  Aligned_cols=47  Identities=13%  Similarity=0.219  Sum_probs=35.2

Q ss_pred             cCCCEEEeCCCCCCC--CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~~~--~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .++|+|+|+||.+..  .....+.+.+++ ..+++||.+||.|.++|+.+
T Consensus        62 ~~~D~livpGG~~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a  111 (168)
T 3l18_A           62 DEFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHGPQILISA  111 (168)
T ss_dssp             GGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred             hhCCEEEECCCcCHHHhccCHHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence            358999999997532  123345566665 56789999999999999975

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=97.36  E-value=0.00023  Score=52.03  Aligned_cols=46  Identities=15%  Similarity=0.271  Sum_probs=36.1

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ++|.|||+||.+.......+.+.+++ ..++++|.+||-|..+|+.+
T Consensus        63 ~~D~livpGG~~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a  109 (206)
T 3f5d_A           63 NFNLLVMIGGDSWSNDNKKLLHFVKTAFQKNIPIAAICGAVDFLAKN  109 (206)
T ss_dssp             CCSEEEECCBSCCCCCCHHHHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred             CCCEEEEcCCCChhhcCHHHHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence            68999999998654433445566665 56789999999999999975

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=97.25  E-value=5e-05  Score=54.58  Aligned_cols=47  Identities=19%  Similarity=0.368  Sum_probs=34.6

Q ss_pred             cCCCEEEeCCCCCCC---CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~~~---~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .++|+|||+||.+..   .....+.+.+++ ..+++||.+||.|.++|+.+
T Consensus        74 ~~~D~livpGG~~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a  124 (190)
T 2vrn_A           74 SDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET  124 (190)
T ss_dssp             GGCSEEEECCCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred             hhCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence            368999999997433   233445566665 56789999999999999985

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=97.21  E-value=8.6e-05  Score=53.73  Aligned_cols=52  Identities=13%  Similarity=0.065  Sum_probs=37.2

Q ss_pred             HHH-HhcCCCEEEeCCCCCCCC---CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626            7 VSY-CRKNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus         7 ~~~-~~~~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      +++ ...++|+|||+||.+...   ....+.+.+++ ..+++||.+||.|.++|+.+
T Consensus        59 ~~~~~~~~~D~livpGG~~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a  115 (197)
T 2rk3_A           59 EDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAH  115 (197)
T ss_dssp             HHHHTTCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             HHcCCccCCCEEEECCCchhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence            444 335799999999974332   22334555655 56789999999999999976

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=97.17  E-value=0.00016  Score=54.33  Aligned_cols=48  Identities=17%  Similarity=0.151  Sum_probs=36.1

Q ss_pred             cCCCEEEeCCCCCCC--------------CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHh
Q 030626           12 KNPRGVLISPGPGAP--------------QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF   59 (174)
Q Consensus        12 ~~~dgiii~GG~~~~--------------~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~   59 (174)
                      .++|+|||+||.+..              .....+.+.+++ ..+++||.+||-|..+|+.+-
T Consensus       106 ~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag  168 (242)
T 3l3b_A          106 EEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL  168 (242)
T ss_dssp             GGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred             ccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence            368999999997631              122345566665 567899999999999999875

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.15  E-value=0.00012  Score=51.96  Aligned_cols=47  Identities=13%  Similarity=0.052  Sum_probs=34.3

Q ss_pred             cCCCEEEeCCC--C-CCCC-----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPG--P-GAPQ-----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG--~-~~~~-----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .++|.||++||  . +...     ....+.+.+++ ..+++||.+||.|.++|+.+
T Consensus        65 ~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a  120 (175)
T 3cne_A           65 DEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT  120 (175)
T ss_dssp             GGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred             ccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence            36899999999  5 4322     12334555655 56789999999999999976

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=97.06  E-value=8.5e-05  Score=54.19  Aligned_cols=53  Identities=15%  Similarity=0.186  Sum_probs=37.6

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCC---CcchhHHHHHH-cCCCCcEEeehHhH-HHHHHH
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGL-QCIGEA   58 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PilGIC~G~-Qll~~~   58 (174)
                      ++++...++|+|||+||.+...   ....+.+.+++ ..+++||.+||.|. ++|+.+
T Consensus        59 l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a  116 (205)
T 2ab0_A           59 LVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH  116 (205)
T ss_dssp             HHHHTTSCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred             HHHCCcccCCEEEECCCcccHHHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence            3455445799999999975332   22334555655 56789999999999 999864

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=97.02  E-value=0.00066  Score=49.37  Aligned_cols=47  Identities=17%  Similarity=0.138  Sum_probs=36.5

Q ss_pred             cCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .++|.|||+||.+.......+++.+++ ..++++|.+||-|..+|+.+
T Consensus        70 ~~~D~livpGG~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a  117 (202)
T 3gra_A           70 KELDLLVVCGGLRTPLKYPELDRLLNDCAAHGMALGGLWNGAWFLGRA  117 (202)
T ss_dssp             TTCSEEEEECCTTCCSCCTTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred             CCCCEEEEeCCCchhhccHHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence            468999999998755433445566665 55779999999999999986

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=96.99  E-value=0.00032  Score=50.27  Aligned_cols=46  Identities=13%  Similarity=0.135  Sum_probs=34.7

Q ss_pred             CCCEEEeCCCCCCC-CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           13 NPRGVLISPGPGAP-QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        13 ~~dgiii~GG~~~~-~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ++|+|||+||.+.. .....+.+.+++ ..+++||.+||-|.++|+.+
T Consensus        63 ~~D~livpGG~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a  110 (188)
T 2fex_A           63 DIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVAGICAAASALGGT  110 (188)
T ss_dssp             TCSEEEECCBSHHHHTCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred             cCCEEEECCCCcccccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence            68999999997532 223445566665 55789999999999999975

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=96.93  E-value=0.00017  Score=53.19  Aligned_cols=47  Identities=15%  Similarity=0.189  Sum_probs=36.2

Q ss_pred             cCCCEEEeCCCCCCC---CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~~~---~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .++|+|||+||.+..   .....+.+.+++ ..+++||.+||-|.++|+.+
T Consensus        88 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~a  138 (224)
T 1u9c_A           88 HGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNA  138 (224)
T ss_dssp             SSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             hhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHc
Confidence            469999999998753   233445566665 56789999999999999865

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=96.89  E-value=0.00049  Score=50.40  Aligned_cols=47  Identities=9%  Similarity=0.111  Sum_probs=35.0

Q ss_pred             cCCCEEEeCCCCCCCC-CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPGPGAPQ-DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~-~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ..+|.|||+||.+... ....+.+.+++ ..++++|.+||-|..+|+.+
T Consensus        73 ~~~D~livpGG~~~~~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a  121 (212)
T 3efe_A           73 ESKDLLILPGGTTWSEEIHQPILERIGQALKIGTIVAAICGATDALANM  121 (212)
T ss_dssp             CTTCEEEECCCSCTTSGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred             cCCCEEEECCCCccccccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence            3699999999976432 22334555654 56789999999999999975

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=96.70  E-value=0.00023  Score=51.18  Aligned_cols=51  Identities=10%  Similarity=0.127  Sum_probs=35.8

Q ss_pred             HHHhcCCCEEEeCCCCCCC---CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626            8 SYCRKNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus         8 ~~~~~~~dgiii~GG~~~~---~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ++...++|.|+|+||....   .....+.+.+++ ..+++||.+||-|.++|+.+
T Consensus        62 ~~~~~~~D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a  116 (190)
T 4e08_A           62 QVASDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKH  116 (190)
T ss_dssp             GGTTCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             HCCcccCCEEEECCCChHHHHhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence            3433468999999994322   122344555655 56789999999999999975

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=96.67  E-value=0.0008  Score=49.17  Aligned_cols=46  Identities=9%  Similarity=-0.004  Sum_probs=35.3

Q ss_pred             CCCEEEeCCCCCCCC----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           13 NPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        13 ~~dgiii~GG~~~~~----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ++|.|||+||.+...    ....+++.+++ ..++++|.+||-|..+|+.+
T Consensus        74 ~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a  124 (209)
T 3er6_A           74 FTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA  124 (209)
T ss_dssp             CCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred             CCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence            689999999975322    23445566665 56789999999999999986

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=96.61  E-value=0.0018  Score=48.08  Aligned_cols=46  Identities=17%  Similarity=0.182  Sum_probs=36.1

Q ss_pred             CCCEEEeCCCCCCC--CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           13 NPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        13 ~~dgiii~GG~~~~--~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .+|.|+|+||++..  .....+++.+++ ..++++|.+||-|..+|+.+
T Consensus        65 ~~D~livpGG~g~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a  113 (231)
T 3noq_A           65 PLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLGAA  113 (231)
T ss_dssp             CCSEEEECCSTTHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred             cCCEEEECCCCChhhhccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence            58999999997642  233455666765 67889999999999999875

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=96.58  E-value=0.00032  Score=52.79  Aligned_cols=48  Identities=13%  Similarity=0.090  Sum_probs=35.8

Q ss_pred             hcCCCEEEeCCCCCCC---CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           11 RKNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        11 ~~~~dgiii~GG~~~~---~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ..+||+|+|+||.+..   .....+.+.+++ ..+++||-+||-|-.+|+.+
T Consensus       103 ~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a  154 (247)
T 3n7t_A          103 PHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI  154 (247)
T ss_dssp             GGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred             hhhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence            3469999999998752   223345566665 56789999999999999765

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=96.38  E-value=0.00047  Score=51.73  Aligned_cols=47  Identities=13%  Similarity=0.115  Sum_probs=35.4

Q ss_pred             cCCCEEEeCCCCCCC---CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~~~---~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .+||+|+|+||.+..   .....+.+.+++ ..+++||-+||-|-.+|+.+
T Consensus        97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a  147 (244)
T 3kkl_A           97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL  147 (244)
T ss_dssp             GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             hhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence            468999999998752   233345566655 56789999999999999865

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=96.24  E-value=0.00042  Score=51.86  Aligned_cols=46  Identities=15%  Similarity=0.087  Sum_probs=34.8

Q ss_pred             CCCEEEeCCCCCCCC---CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           13 NPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        13 ~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ++|+|||+||.+...   ....+.+.+++ ..+++||.+||-|-.+|+.+
T Consensus        98 ~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a  147 (243)
T 1rw7_A           98 DYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL  147 (243)
T ss_dssp             GEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             hCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence            589999999987432   23345566665 56789999999999988865

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=96.22  E-value=0.0013  Score=52.58  Aligned_cols=47  Identities=21%  Similarity=0.335  Sum_probs=35.6

Q ss_pred             cCCCEEEeCCCCCCC--CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~~~--~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .++|.||++||.+..  .....+.+.+++ ..+++||.+||-|.++|+.+
T Consensus       281 ~~~D~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a  330 (396)
T 3uk7_A          281 SSYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA  330 (396)
T ss_dssp             GGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred             ccCCEEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence            368999999997532  233445566665 56789999999999999976

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=96.18  E-value=0.0028  Score=47.70  Aligned_cols=46  Identities=17%  Similarity=0.246  Sum_probs=35.7

Q ss_pred             CCCEEEeCCCC-CCC--CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           13 NPRGVLISPGP-GAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        13 ~~dgiii~GG~-~~~--~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .||.|||+||. +..  .....+++.+++ ..++++|.+||-|..+|+.+
T Consensus        84 ~yD~liVPGG~~g~~~l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A  133 (253)
T 3ewn_A           84 DLTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGSLILGAA  133 (253)
T ss_dssp             SCSEEEECCBSHHHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred             CCCEEEECCCccchhhhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence            57999999997 532  234456666765 67889999999999999875

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=96.02  E-value=0.0013  Score=52.12  Aligned_cols=47  Identities=21%  Similarity=0.251  Sum_probs=35.5

Q ss_pred             cCCCEEEeCCCCCCC--CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~~~--~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .++|.|||+||.+..  .....+.+.+++ ..++++|.+||-|..+|+.+
T Consensus        72 ~~~DaLiVPGG~g~~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A  121 (365)
T 3fse_A           72 SEFDAVVIPGGMAPDKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG  121 (365)
T ss_dssp             GGCSEEEECCBTHHHHHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             cCCCEEEEECCcchhhccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence            358999999998532  233445566665 56789999999999999975

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=96.00  E-value=0.00042  Score=50.58  Aligned_cols=47  Identities=13%  Similarity=0.137  Sum_probs=34.6

Q ss_pred             cCCCEEEeCCCCCCC---CCcchhHHHHHH-cCCCCcEEeehHhH-HHHHHH
Q 030626           12 KNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGL-QCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~~~---~~~~~~~~~i~~-~~~~~PilGIC~G~-Qll~~~   58 (174)
                      .++|.|||+||.+..   .....+.+.+++ ..++++|.+||-|. .+|+.+
T Consensus        70 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a  121 (208)
T 3ot1_A           70 EAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQ  121 (208)
T ss_dssp             GGCSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred             cCCCEEEECCCchHHHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence            368999999996422   233445566665 56789999999998 888863

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=95.96  E-value=0.0089  Score=50.93  Aligned_cols=49  Identities=12%  Similarity=0.077  Sum_probs=36.7

Q ss_pred             HhcCCCEEEeCCCCCCC----------CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           10 CRKNPRGVLISPGPGAP----------QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        10 ~~~~~dgiii~GG~~~~----------~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ....||+|||+||....          ......+..+++ ...++||-.||-|-++|..+
T Consensus       587 ~s~~fDAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A  646 (688)
T 3ej6_A          587 DATAFDAVVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSAKKALQSI  646 (688)
T ss_dssp             CGGGCSEEEECTTCCTTTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred             ChhcCcEEEECCCcccccccccchhhhccCHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence            34469999999996541          233445566665 67889999999999999865

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=95.91  E-value=0.0013  Score=48.20  Aligned_cols=45  Identities=13%  Similarity=0.285  Sum_probs=33.8

Q ss_pred             CCEEEeCCCCCCC--CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           14 PRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        14 ~dgiii~GG~~~~--~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      +|.|||+||.+..  .....+++.+++ ..++++|.+||-|..+|+.+
T Consensus        66 ~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a  113 (211)
T 3mgk_A           66 EKILFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKA  113 (211)
T ss_dssp             EEEEEECCSTHHHHHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred             CCEEEECCCcchhhhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence            7999999997642  123345566665 55779999999999999975

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=95.89  E-value=0.002  Score=51.47  Aligned_cols=47  Identities=19%  Similarity=0.306  Sum_probs=35.4

Q ss_pred             cCCCEEEeCCCCCCC--CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~~~--~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .++|+|+++||.+..  .....+.+.+++ ..+++||.+||-|.++|+.+
T Consensus        88 ~~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a  137 (396)
T 3uk7_A           88 SKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAA  137 (396)
T ss_dssp             GGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred             ccCCEEEECCCcchhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence            368999999997532  223345566665 56789999999999999976

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=95.86  E-value=0.0016  Score=50.01  Aligned_cols=47  Identities=13%  Similarity=0.122  Sum_probs=35.3

Q ss_pred             cCCCEEEeCCCCCCCCC---cchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           12 KNPRGVLISPGPGAPQD---SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~~---~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .++|+|||+||.+...+   ...+.+.+++ ..++++|.+||-|-.+|+.+
T Consensus       144 ~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a  194 (291)
T 1n57_A          144 SEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLAL  194 (291)
T ss_dssp             CSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGG
T ss_pred             ccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhh
Confidence            46899999999775422   2345566665 56789999999999988765

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=95.76  E-value=0.0026  Score=47.42  Aligned_cols=45  Identities=24%  Similarity=0.416  Sum_probs=33.5

Q ss_pred             CCCEEEeCCC-CCCC--CCcchhHHHHHHcCCCC-cEEeehHhHHHHHHH
Q 030626           13 NPRGVLISPG-PGAP--QDSGISLQTVLELGPTV-PLFGVCMGLQCIGEA   58 (174)
Q Consensus        13 ~~dgiii~GG-~~~~--~~~~~~~~~i~~~~~~~-PilGIC~G~Qll~~~   58 (174)
                      ++|.|||+|| ++..  .....+.+.+ ...++. +|.+||-|-.+|+.+
T Consensus        80 ~~D~liVPGG~~g~~~l~~~~~l~~~L-~~~~~~~~IaaIC~G~~lLa~A  128 (236)
T 3bhn_A           80 EQDVVLITSGYRGIPAALQDENFMSAL-KLDPSRQLIGSICAGSFVLHEL  128 (236)
T ss_dssp             GCSEEEECCCTTHHHHHHTCHHHHHHC-CCCTTTCEEEEETTHHHHHHHT
T ss_pred             CCCEEEEcCCccCHhhhccCHHHHHHH-HhCCCCCEEEEEcHHHHHHHHc
Confidence            5899999999 5532  1233455566 656666 999999999999976

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=95.10  E-value=0.0038  Score=53.62  Aligned_cols=47  Identities=13%  Similarity=0.078  Sum_probs=35.6

Q ss_pred             hcCCCEEEeCCCCCCC--CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           11 RKNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        11 ~~~~dgiii~GG~~~~--~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ...||+|||+|| +..  .....++..+++ ...++||-+||-|-++|+.+
T Consensus       659 s~~fDALVVPGG-g~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A  708 (753)
T 3ttv_A          659 SLTVDAVIVPCG-NIADIADNGDANYYLMEAYKHLKPIALAGDARKFKATI  708 (753)
T ss_dssp             GGGCSEEEECCS-CGGGTTTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred             CcCCCEEEECCC-ChHHhhhCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence            345899999999 432  234455666665 66789999999999999865

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=94.74  E-value=0.025  Score=48.26  Aligned_cols=49  Identities=12%  Similarity=0.132  Sum_probs=35.8

Q ss_pred             HhcCCCEEEeCCCCCC-------------------CCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           10 CRKNPRGVLISPGPGA-------------------PQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        10 ~~~~~dgiii~GG~~~-------------------~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ....||+|||+||...                   -......+..+++ ...++||-.||-|-++|..+
T Consensus       580 ~s~~fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a  648 (688)
T 2iuf_A          580 DAVQFDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG  648 (688)
T ss_dssp             CGGGCSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred             CccccCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence            3457999999999533                   1233445566665 56789999999999988764

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=94.64  E-value=0.011  Score=50.68  Aligned_cols=49  Identities=16%  Similarity=0.241  Sum_probs=36.3

Q ss_pred             cCCCEEEeCCCCCCC---CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhC
Q 030626           12 KNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG   60 (174)
Q Consensus        12 ~~~dgiii~GG~~~~---~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~g   60 (174)
                      ..+|+|||+||.+..   .....+++.+++ ..+++||.+||-|..+|+.++|
T Consensus       594 ~~yDaViVPGG~~~~~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG  646 (715)
T 1sy7_A          594 TMVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIA  646 (715)
T ss_dssp             GGSSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred             ccCCEEEEcCCcccHhhhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence            358999999995322   223445566665 5678999999999999998864

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=93.28  E-value=0.034  Score=39.92  Aligned_cols=45  Identities=18%  Similarity=0.163  Sum_probs=30.9

Q ss_pred             CCCEEEeCCCCCCC---CCcchhHHHHHHc-C-CCCcEEeehHhHHHHHHH
Q 030626           13 NPRGVLISPGPGAP---QDSGISLQTVLEL-G-PTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        13 ~~dgiii~GG~~~~---~~~~~~~~~i~~~-~-~~~PilGIC~G~Qll~~~   58 (174)
                      +||+|||+||.+..   .+...+.+.+++. . .++++-.||-|.. |+.+
T Consensus        73 ~yD~lvvPGG~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~-l~~a  122 (194)
T 4gdh_A           73 QYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGTL-TAKT  122 (194)
T ss_dssp             HCSEEEECCCHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGH-HHHH
T ss_pred             cCCEEEECCCchhHhHhhhCHHHHHHHHHhhhcCCceEEeeccccc-chhh
Confidence            58999999995432   2344556777663 3 4789999999984 4433

>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=89.82  E-value=0.066  Score=36.97  Aligned_cols=39  Identities=21%  Similarity=0.234  Sum_probs=26.7

Q ss_pred             cCCCEEEeCCCCCCCC---CcchhHHHHHHc-CCCCcEEeehH
Q 030626           12 KNPRGVLISPGPGAPQ---DSGISLQTVLEL-GPTVPLFGVCM   50 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~---~~~~~~~~i~~~-~~~~PilGIC~   50 (174)
                      .++|.|||.||-.-|.   ......+.+.++ ....+++|||+
T Consensus        83 ~~~D~vVllGGLAMPk~~v~~e~v~~li~ki~~~~~kiiGvCF  125 (157)
T 2r47_A           83 GNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCY  125 (157)
T ss_dssp             CCEEEEEEEGGGGSTTTSCCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCEEEEeccccCCCCCCCHHHHHHHHHHhhcCCCCEEEEEh
Confidence            4789999999977664   233344445553 34577999995

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=86.40  E-value=0.26  Score=37.74  Aligned_cols=50  Identities=12%  Similarity=0.203  Sum_probs=33.7

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCC----CcchhHHHHHH-cCCC-CcEEeehHhHHHHHH
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQ----DSGISLQTVLE-LGPT-VPLFGVCMGLQCIGE   57 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~----~~~~~~~~i~~-~~~~-~PilGIC~G~Qll~~   57 (174)
                      .+.|.  +.|+|+++||.-...    ....+.+.|++ ..++ +|+.|+|.|.-+++.
T Consensus       105 ~~~l~--~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~  160 (291)
T 3en0_A          105 RLFVE--QCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAGAAVMGH  160 (291)
T ss_dssp             HHHHH--HCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred             HHHHh--cCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence            44454  579999999854221    12234455654 5667 999999999998865

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=82.96  E-value=3.1  Score=27.35  Aligned_cols=45  Identities=13%  Similarity=0.110  Sum_probs=31.2

Q ss_pred             hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHH
Q 030626            4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQC   54 (174)
Q Consensus         4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Ql   54 (174)
                      ...++..+....+||+..|..    ..++.+..++  .++.++|=|+|.++
T Consensus        73 ~~v~e~~~~g~k~v~~~~G~~----~~e~~~~a~~--~Girvv~nC~gv~l  117 (122)
T 3ff4_A           73 SEYNYILSLKPKRVIFNPGTE----NEELEEILSE--NGIEPVIGCTLVML  117 (122)
T ss_dssp             GGHHHHHHHCCSEEEECTTCC----CHHHHHHHHH--TTCEEEESCHHHHH
T ss_pred             HHHHHHHhcCCCEEEECCCCC----hHHHHHHHHH--cCCeEECCcCeEEe
Confidence            456777777888999998853    2233333333  56999999999876

>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1

Probab=80.75  E-value=0.26  Score=25.59  Aligned_cols=17  Identities=35%  Similarity=0.520  Sum_probs=13.0

Q ss_pred             cEEeehHhHHHHHHHhC
Q 030626           44 PLFGVCMGLQCIGEAFG   60 (174)
Q Consensus        44 PilGIC~G~Qll~~~~g   60 (174)
                      -.-|-|+|.|+|..+-|
T Consensus        31 gtagacfgaqimvaakg   47 (48)
T 1ehs_A           31 GTAGACFGAQIMVAAKG   47 (48)
T ss_dssp             SSCCTTTTTHHHHTTTT
T ss_pred             CccccccchhHhhhccc
Confidence            45688999999986543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d1a9xb2	228	c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthe	3e-27
d1qdlb_	195	c.23.16.1 (B:) Anthranilate synthase GAT subunit,	5e-24
d1gpma2	205	c.23.16.1 (A:3-207) GMP synthetase {Escherichia co	9e-21
d1i7qb_	192	c.23.16.1 (B:) Anthranilate synthase GAT subunit,	3e-20
d1l9xa_	288	c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Ho	6e-17
d1wl8a1	188	c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA	7e-15
d2a9va1	196	c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA	7e-15
d2nv0a1	195	c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bac	3e-09
d1k9vf_	200	c.23.16.1 (F:) GAT subunit, HisH, (or domain) of i	1e-07
d1o1ya_	230	c.23.16.1 (A:) Hypothetical protein TM1158 {Thermo	6e-06
d2abwa1	218	c.23.16.1 (A:2-219) Pyridoxine biosynthesis protei	9e-05
d1jvna2	232	c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain	2e-04
d1q7ra_	202	c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus	3e-04
d2ghra1	281	c.23.16.8 (A:17-297) Homoserine O-succinyltransfer	6e-04
d1ka9h_	195	c.23.16.1 (H:) GAT subunit, HisH, (or domain) of i	0.002

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} Length = 228

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (249), Expect = 3e-27
 Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 13/154 (8%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVM 71
           NP G+ +S GPG P     ++  + + L   +P+FG+C+G Q +  A G K V+   G  
Sbjct: 80  NPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHH 139

Query: 72  HGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAAR 131
            G   +   ++                 + H   +++ + P++         DG +    
Sbjct: 140 GGNHPVKDVEKN----------VVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIH 189

Query: 132 HKKYKHLQGVQFHPESIITTE-GKTIVRNFIKMI 164
                     Q +PE+         +  +FI++I
Sbjct: 190 RTDKP-AFSFQGNPEASPGPHDAAPLFDHFIELI 222

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 91.1 bits (225), Expect = 5e-24
 Identities = 60/157 (38%), Positives = 86/157 (54%), Gaps = 7/157 (4%)

Query: 11  RKNPRGVLISPGPG---APQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP 67
           R +P  ++ISPGPG     +D G+SL  +  LG   P+ GVC+G Q IG AFG KI R+ 
Sbjct: 43  RIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRAR 102

Query: 68  LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 127
                  S+++  +      L  G++  F A RYHSLV+++   P          ED  I
Sbjct: 103 KVFHGKISNIILVNNSP-LSLYYGIAKEFKATRYHSLVVDEVHRPLI--VDAISAEDNEI 159

Query: 128 MAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 164
           MA  H++Y  + GVQFHPES+ T+ G  I+ NF+  +
Sbjct: 160 MAIHHEEYP-IYGVQFHPESVGTSLGYKILYNFLNRV 195

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

 Score = 82.7 bits (203), Expect = 9e-21
 Identities = 37/160 (23%), Positives = 61/160 (38%)

Query: 10  CRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG 69
              NP G+++S GP +  +              VP+FGVC G+Q +    GG +  S   
Sbjct: 45  RDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNER 104

Query: 70  VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMA 129
                   V  D     G+   L+          +    +     +  +T  + +    A
Sbjct: 105 EFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFA 164

Query: 130 ARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 169
               + K   GVQFHPE   T +G  ++  F++ I + EA
Sbjct: 165 IMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEA 204

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

 Score = 81.1 bits (199), Expect = 3e-20
 Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 9/157 (5%)

Query: 11  RKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
                 +++SPGPG P ++G   + +  L   +P+ G+C+G Q I EA+GG++ ++   +
Sbjct: 45  HMEQPVLMLSPGPGTPSEAGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAG-EI 103

Query: 71  MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
           +HGK+S + +D    +G+ AG++NP    RYHSLV                    ++MA 
Sbjct: 104 LHGKASAIAHDG---EGMFAGMANPLPVARYHSLVGSNIPAD----LTVNARFGEMVMAV 156

Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 167
           R  + + + G QFHPESI+TT G  ++   +   + K
Sbjct: 157 RDDR-RRVCGFQFHPESILTTHGARLLEQTLAWALAK 192

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (181), Expect = 6e-17
 Identities = 28/200 (14%), Positives = 52/200 (26%), Gaps = 41/200 (20%)

Query: 13  NPRGVLISPGPGAPQDSGISLQTVLEL----------GPTVPLFGVCMGLQCIGEAFGGK 62
                ++ PG           +               G   P++G C+G + +     G+
Sbjct: 58  KSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGE 117

Query: 63  IVRSPLGVMHGKSSLVYYDEKG---------EDGLLAGLSNPFTAGRYHSLVIEKESFPS 113
            + +        +  + +                LL  L+       +H   +  ++F  
Sbjct: 118 CLLTATD-TVDVAMPLNFTGGQLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTM 176

Query: 114 DA-----LEVTAWTEDGL---IMAARHKKYKHLQGVQFHPESII-----------TTEGK 154
           +        V     DG    I      KY    GVQ+HPE                   
Sbjct: 177 NEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVY-GVQWHPEKAPYEWKNLDGISHAPNAV 235

Query: 155 TIVRNFIKMIVRKEAADSQN 174
                  +  V  EA  + +
Sbjct: 236 KTAFYLAEFFV-NEARKNNH 254

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 66.8 bits (162), Expect = 7e-15
 Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 13/131 (9%)

Query: 43  VPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYH 102
            P+ G+C+G Q I   FG  +V++                   + +  GL +  T    H
Sbjct: 74  YPILGICVGAQFIALHFGASVVKAKHPEFGK----TKVSVMHSENIFGGLPSEITVWENH 129

Query: 103 SLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 162
           +  I       D   + A +    +    HK  + +   QFHPE   T  G+ I RNFI 
Sbjct: 130 NDEIIN---LPDDFTLAASSATCQVQGFYHKT-RPIYATQFHPEVEHTQYGRDIFRNFIG 185

Query: 163 MI-----VRKE 168
           +      ++KE
Sbjct: 186 ICASYREIQKE 196

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

 Score = 51.4 bits (122), Expect = 3e-09
 Identities = 32/156 (20%), Positives = 50/156 (32%), Gaps = 19/156 (12%)

Query: 18  LISPGPGAPQDSGISLQTVLEL------GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVM 71
           LI PG  +     +                  P+FG C GL  + +   G        + 
Sbjct: 42  LILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEIAGSDNPHLGLLN 101

Query: 72  HGKSSLVYY---DEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIM 128
                  +    D    D  + GL  PFT     +  I      +          +G I+
Sbjct: 102 VVVERNSFGRQVDSFEADLTIKGLDEPFTGVFIRAPHI----LEAGENVEVLSEHNGRIV 157

Query: 129 AARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 164
           AA+        G  FHPE    TE   + + F++M+
Sbjct: 158 AAKQG---QFLGCSFHPEL---TEDHRVTQLFVEMV 187

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} Length = 200

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

 Score = 47.3 bits (111), Expect = 1e-07
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 4/123 (3%)

Query: 46  FGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLV 105
            GVC+G+Q + E          L ++ G    +        G    +        Y+  V
Sbjct: 81  VGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLPHMGWNEVIFKDTFPNGYYYFV 140

Query: 106 IEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPE-SIITTEGKTIVRNFIKMI 164
               +   +   +     DG I  +  +K   + G QFHPE S  +  G+ ++   I+  
Sbjct: 141 HTYRAVCEEEHVLGTTEYDGEIFPSAVRK-GRILGFQFHPEKS--SKIGRKLLEKVIECS 197

Query: 165 VRK 167
           + +
Sbjct: 198 LSR 200

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.7 bits (99), Expect = 6e-06
 Identities = 23/159 (14%), Positives = 46/159 (28%), Gaps = 22/159 (13%)

Query: 12  KNPRGVLISPGPGAPQDSGISLQTVLE-------LGPTVPLFGVCMGLQCIGEAFGGKIV 64
           +    V++  G     +         E       L   +P  G+C+G Q + +  G  + 
Sbjct: 47  EEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKVLGASVY 106

Query: 65  RSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED 124
           R   G   G   +    +           +     ++H    +     +        +E 
Sbjct: 107 RGKNGEEIGWYFVEKVSDNKF---FREFPDRLRVFQWHGDTFDLPRRATR----VFTSEK 159

Query: 125 GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
                     Y    G+QFH E      G   ++ +I+ 
Sbjct: 160 YENQ---GFVYGKAVGLQFHIEV-----GARTMKRWIEA 190

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 218

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 39.1 bits (90), Expect = 9e-05
 Identities = 17/138 (12%), Positives = 33/138 (23%), Gaps = 23/138 (16%)

Query: 44  PLFGVCMGLQCIGEAFGGKIVRSP------LGVMHGKSSLVYYDEK-----------GED 86
           P++G C G   + +      + S        G +       +Y  +            + 
Sbjct: 81  PIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNFYGSQNDSFICSLNIISDS 140

Query: 87  GLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPE 146
                          +   I  +     A          +I A       +  G  FHPE
Sbjct: 141 SAFKKDLTAACIRAPYIREILSDEVKVLATFSHESYGPNIIAAVEQN---NCLGTVFHPE 197

Query: 147 SIITTEGKTIVRNFIKMI 164
                      + F + +
Sbjct: 198 L---LPHTAFQQYFYEKV 212

>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} Length = 232

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 94  NPFTAGRYHSLVIEKESFPSDALEVTAWTEDGL--IMAARHKKYKHLQGVQFHPESIITT 151
             F       L  EK+    +     A  + G    +AA +K   ++   QFHPE     
Sbjct: 146 YYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNKN--NIFATQFHPE-KSGK 202

Query: 152 EGKTIVRNFIKMI 164
            G  ++ NF+K  
Sbjct: 203 AGLNVIENFLKQQ 215

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} Length = 202

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 25/158 (15%), Positives = 49/158 (31%), Gaps = 12/158 (7%)

Query: 12  KNPRGVLISPGP-----GAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 66
           +   G+++  G            G+            P+FG C GL  + +   G     
Sbjct: 42  EGLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKRIVGYDEPH 101

Query: 67  PLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGL 126
              +        +  ++        +           +         D ++V A   +  
Sbjct: 102 LGLMDITVERNSFGRQRESFEAELSIKGVGDGFVGVFIRAPHIVEAGDGVDVLATY-NDR 160

Query: 127 IMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 164
           I+AAR        G  FHPE    T+   +++ F+ M+
Sbjct: 161 IVAARQG---QFLGCSFHPEL---TDDHRLMQYFLNMV 192

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

 Score = 36.9 bits (85), Expect = 6e-04
 Identities = 16/104 (15%), Positives = 29/104 (27%), Gaps = 4/104 (3%)

Query: 44  PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 103
               +C G Q       G         M G       ++     LL G    F A     
Sbjct: 121 STLHICWGAQAGLYHHYGVQKYPLKEKMFGVFEHEVREQH--VKLLQGFDELFFAPHSRH 178

Query: 104 LVIEKESFPS-DALEVTAWTEDGLIMAARHKKYKHLQGVQFHPE 146
             + +        L + A +E+  +     ++ + +     H E
Sbjct: 179 TEVRESDIREVKELTLLANSEEAGVHLVIGQEGRQV-FALGHSE 221

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 3/52 (5%)

Query: 111 FPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 162
             +         E     A   K+  +L   QFHPE      G   +    +
Sbjct: 145 PLTPYSLGKGEYEGTPFTALLAKE--NLLAPQFHPE-KSGKAGLAFLALARR 193

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	100.0
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	100.0
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	100.0
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	100.0
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	100.0
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	100.0
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	99.97
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	99.95
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	99.94
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	99.93
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	99.93
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	99.91
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	99.9
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	99.87
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	99.87
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	99.86
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	99.83
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	99.39
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	97.44
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	97.26
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	97.15
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	97.11
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	96.97
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	96.94
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	96.83
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	96.74
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	96.73
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	95.97
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	94.77
d1ehsa_	48	Heat-stable enterotoxin B {Escherichia coli [TaxId	80.75

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=8.4e-37  Score=223.55  Aligned_cols=152  Identities=24%  Similarity=0.350  Sum_probs=126.7

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHHHHH--cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCCccc
Q 030626           13 NPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLA   90 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~i~~--~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~   90 (174)
                      ++||||++||+++..+...++..+.+  ...++|+||||+|||+|+.++||++.+..... ++ +..+..  ...+++|+
T Consensus        42 ~~dgiIl~Gg~~~~~~~~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~~gg~~~~~~~~~-~~-~~~~~~--~~~~~l~~  117 (196)
T d2a9va1          42 GLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAKHPE-FG-KTKVSV--MHSENIFG  117 (196)
T ss_dssp             TCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCEEEETHHHHHHHHHTTCEEEEEEEEE-EE-EEEEEE--SCCCGGGT
T ss_pred             cCCcEEEeccccccccccchhhhHHHHHhhcCceEEEeehhhhhhhhccccccccccccc-cc-cceEEE--ecCCcccc
Confidence            68999999999998877766555543  35689999999999999999999998876322 22 222222  24678999


Q ss_pred             CCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHHHHHHh
Q 030626           91 GLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAA  170 (174)
Q Consensus        91 ~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~~~~  170 (174)
                      ++++.+.++++|++.+..   ++++++++|+++++.++++++++++ +||+|||||+..+++|.+||+||++.|.+.+..
T Consensus       118 ~~~~~~~~~~~H~~~v~~---~~~~~~v~a~~~~~~v~ai~~~~~~-i~gvQfHPE~~~s~~G~~il~~F~~~~~~~~~~  193 (196)
T d2a9va1         118 GLPSEITVWENHNDEIIN---LPDDFTLAASSATCQVQGFYHKTRP-IYATQFHPEVEHTQYGRDIFRNFIGICASYREI  193 (196)
T ss_dssp             TCCSEEEEEEEEEEEEES---CCTTEEEEEECSSCSCSEEEESSSS-EEEESSCTTSTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEecceeEEEe---CCCccceeecccccchheEEECCCC-EEEEEeCcccCCCccHHHHHHHHHHHHHHHHHh
Confidence            999999999999999986   7799999999999999999999876 999999999878889999999999999987765


Q ss_pred             hc
Q 030626          171 DS  172 (174)
Q Consensus       171 ~~  172 (174)
                      ++
T Consensus       194 ~~  195 (196)
T d2a9va1         194 QK  195 (196)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-35  Score=221.73  Aligned_cols=153  Identities=24%  Similarity=0.443  Sum_probs=123.5

Q ss_pred             HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccC
Q 030626            5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK   83 (174)
Q Consensus         5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~   83 (174)
                      ..+++.+.++||||||||||++.+.+..++.+.+ +..++||||||+|||+|+.++||++.+...+ .+|...++.... 
T Consensus        72 ~~~~i~~~~pdgivlS~GPg~P~~~~~~~~~~~~~~~~~iPILGIClG~Qlia~~~Gg~v~k~~~~-~~G~~~~~~~~~-  149 (228)
T d1a9xb2          72 SAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFG-HHGGNHPVKDVE-  149 (228)
T ss_dssp             CHHHHHTTCCSEEEECCCSBCSTTCHHHHHHHHHHTTSCCCEEEETHHHHHHHHHTTCCEEEEEEE-EEEEEEEEEETT-
T ss_pred             CHHHHHhcCCCEEEEeCCCCccccchhHHHHHHHHHhCCCCEEEEEcChHHHHHHcCCceeecccc-cccccccccccc-
Confidence            4578888999999999999999999887787776 6788999999999999999999999998743 467666554431 


Q ss_pred             CCCCcccCCCCceeecccccceecccCCCCCCcEEEEEc-CCCceEEEeeCCCCceEEEecCCCCcCCC-chHHHHHHHH
Q 030626           84 GEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFI  161 (174)
Q Consensus        84 ~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~a~~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~  161 (174)
                        +.      ..+....+|++.+...++. ..+.+++.+ +|+.|+|+++++.+ +||+|||||...++ ++..||+||+
T Consensus       150 --~~------~~~~~~~~~~~~~~~~~~~-~~~~v~~~s~~d~~i~ai~h~~~~-i~gVQFHPE~~~t~~dg~~l~~nFl  219 (228)
T d1a9xb2         150 --KN------VVMITAQNHGFAVDEATLP-ANLRVTHKSLFDGTLQGIHRTDKP-AFSFQGNPEASPGPHDAAPLFDHFI  219 (228)
T ss_dssp             --TT------EEEEEEEEEEEEECSTTCC-TTEEEEEEETTTCCEEEEEESSSS-EEEESSCTTCSSSCSTTTHHHHHHH
T ss_pred             --cc------eeeeecccccceecccccc-cceEEEEEecCCCcEEEEEECCCC-EEEEeCCCCCCCCcccHHHHHHHHH
Confidence              11      1244567788877665544 567776665 68999999999987 99999999998876 4999999999


Q ss_pred             HHHHHHHH
Q 030626          162 KMIVRKEA  169 (174)
Q Consensus       162 ~~~~~~~~  169 (174)
                      +.+++.+.
T Consensus       220 ~~i~~~kk  227 (228)
T d1a9xb2         220 ELIEQYRK  227 (228)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhC
Confidence            99987654

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=100.00  E-value=3.1e-35  Score=214.51  Aligned_cols=151  Identities=33%  Similarity=0.638  Sum_probs=125.5

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      .+++...++|+|+++|||+++.+..........+..++|+||||+|||+|+.++||++.+.+. ..+|....+..   ..
T Consensus        40 ~~~l~~~~~~~iils~Gpg~~~~~~~~~~i~~~l~~~iPiLGIClG~Q~la~~~Gg~v~~~~~-~~~g~~~~~~~---~~  115 (192)
T d1i7qb_          40 IERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAGE-ILHGKASAIAH---DG  115 (192)
T ss_dssp             HHHHHHCSSEEEEECCCSSCGGGSTTHHHHHHHHBTTBCEEEETHHHHHHHHHTTCEEEEEEE-EEEEEEEEEEE---CC
T ss_pred             HHHHHhcCCCeEEecCccccccccccchhhHHhhhcCccEEeeeHHHHHHHHHCCCeEEECCc-ccccceEEEee---cC
Confidence            566777899999999999999877665444445778999999999999999999999998873 33555544433   35


Q ss_pred             CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626           86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV  165 (174)
Q Consensus        86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~  165 (174)
                      +++|.+.+..+.++.+|++.+..   ++.++.++|.++ ..++|+++++++ +||+|||||...+++|.+||+||++...
T Consensus       116 ~~l~~~~~~~~~~~~~h~~~~~~---~~~~~~~~a~~~-~~i~ai~~~~~~-i~GvQFHPEs~~t~~G~~il~nFl~~~~  190 (192)
T d1i7qb_         116 EGMFAGMANPLPVARYHSLVGSN---IPADLTVNARFG-EMVMAVRDDRRR-VCGFQFHPESILTTHGARLLEQTLAWAL  190 (192)
T ss_dssp             CGGGTTCCSSEEEEEEEEEEEES---CCTTSEEEEEET-TEEEEEEETTTT-EEEESSCTTSTTSTTHHHHHHHHHHHHH
T ss_pred             CCceeeccccceEEeeccccccc---ccceeeeecCCC-CeeEEEEECCCC-EEEEEeCCCcCCCCChHHHHHHHHHHHh
Confidence            67999999999999999999986   678899999765 568999998876 9999999998778899999999998753

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=8.4e-35  Score=212.60  Aligned_cols=154  Identities=41%  Similarity=0.644  Sum_probs=124.0

Q ss_pred             HHHHHHhcCCCEEEeCCCCCCCCCcchh--HHHHH-HcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEec
Q 030626            5 YLVSYCRKNPRGVLISPGPGAPQDSGIS--LQTVL-ELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD   81 (174)
Q Consensus         5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~--~~~i~-~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~   81 (174)
                      -.+++...++|||+++|||+++.+....  ...+. .+..++|+||||+|||+|+.++|+++.+.+.. .++....+...
T Consensus        37 ~~~~i~~~~~~gvilsgGp~~~~~~~~~~~~~~i~~~~~~~~PiLGIClG~Qll~~~~G~~v~~~~~~-~~~~~~~~~~~  115 (195)
T d1qdlb_          37 SIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKIRRARKV-FHGKISNIILV  115 (195)
T ss_dssp             CHHHHHHHCCSEEEECCCSSCTTSHHHHTTHHHHHHHHTTTSCEEEETHHHHHHHHHTTCEEEEEEEE-EEEEEEEEEEC
T ss_pred             CHHHHHhhCCCccccCCCCCccccccccccchhhhhhhcCCCCEEEeehhhhhhhhccCCEEEeeccc-ccccccccccc
Confidence            3567888899999999999999876432  23333 46789999999999999999999999988733 34555455555


Q ss_pred             cCCCCCcccCCCCceeecccccceecccCCCCCCcEEEE-EcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHH
Q 030626           82 EKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTA-WTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNF  160 (174)
Q Consensus        82 ~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a-~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f  160 (174)
                      ......+|.++++.+.++++|++.+..   .+.++..++ .+.++.++|+++++++ +||+|||||+..++.|.+|++||
T Consensus       116 ~~~~~~lf~~~~~~~~~~~~h~~~~~~---~~~~~~~~~~~~~~~~i~ai~~~~~~-i~GvQFHPE~~~s~~G~~il~nF  191 (195)
T d1qdlb_         116 NNSPLSLYYGIAKEFKATRYHSLVVDE---VHRPLIVDAISAEDNEIMAIHHEEYP-IYGVQFHPESVGTSLGYKILYNF  191 (195)
T ss_dssp             CSSCCSTTTTCCSEEEEEEEEEEEEEC---CCTTEEEEEEESSSCCEEEEEESSSS-EEEESSBTTSTTCTTHHHHHHHH
T ss_pred             cccccccccCCCccceeeecceeeeec---cccCcccceeccCCCcEEEEEECCCC-EEEEEcCCCCCCCcchHHHHHHH
Confidence            555677999999999999999998875   445565554 5578899999998876 99999999998889999999999


Q ss_pred             HHH
Q 030626          161 IKM  163 (174)
Q Consensus       161 ~~~  163 (174)
                      +..
T Consensus       192 l~~  194 (195)
T d1qdlb_         192 LNR  194 (195)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            975

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-33  Score=205.96  Aligned_cols=153  Identities=23%  Similarity=0.369  Sum_probs=117.8

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      .+++...++|||+++|||+++.+..........+..++|+||||+|||+|+.++||++.+... ..+|........   .
T Consensus        41 ~~~~~~~~~~giils~gp~~~~~~~~~~~~~~~~~~~~PiLGIClG~Qlla~~~Gg~v~~~~~-~~~G~~~~~~~~---~  116 (205)
T d1gpma2          41 EAQIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNE-REFGYAQVEVVN---D  116 (205)
T ss_dssp             HHHHHHHCCSEEEECCCSSCTTSTTCCCCCGGGGTSSSCEEEETHHHHHHHHHHTCEEECCSS-CEEEEEEEEECS---C
T ss_pred             HHHHhhcCCCeEEecCCCCccchhhhhhHHHHHHhCCCCEEEeccchhhhhhhcCCccccccc-cccCcceecccc---c
Confidence            456667789999999999999877654322233667899999999999999999999998874 346655443332   2


Q ss_pred             CCcccC--------CCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHH
Q 030626           86 DGLLAG--------LSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIV  157 (174)
Q Consensus        86 ~~l~~~--------~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~  157 (174)
                      ..++.+        ....+.++++|++.+..   .+....+++.+.++.++++.+++.+ +||+|||||+..++.|..||
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~n-i~gvQFHPE~s~s~~G~~il  192 (205)
T d1gpma2         117 SALVRGIEDALTADGKPLLDVWMSHGDKVTA---IPSDFITVASTESCPFAIMANEEKR-FYGVQFHPEVTHTRQGMRML  192 (205)
T ss_dssp             CTTTTTCCSEECTTSCEEEEEEEEECSEEEE---CCTTCEEEEECSSCSCSEEEETTTT-EEEESBCTTSTTSTTHHHHH
T ss_pred             cccccccccccccCCccceeeeccccccccc---ccccceeeeccCCCceEEEEeCCCC-EEEEEeecccCCCccHHHHH
Confidence            223332        23346678888888776   6688888999999999999888765 99999999997778999999


Q ss_pred             HHHHHHHHH
Q 030626          158 RNFIKMIVR  166 (174)
Q Consensus       158 ~~f~~~~~~  166 (174)
                      +||++.+++
T Consensus       193 ~nFl~~i~~  201 (205)
T d1gpma2         193 ERFVRDICQ  201 (205)
T ss_dssp             HHHHHTTSC
T ss_pred             HHHHHHHhC
Confidence            999987654

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=1.3e-30  Score=194.62  Aligned_cols=139  Identities=17%  Similarity=0.215  Sum_probs=110.1

Q ss_pred             CCCEEEeCCCCCCCCCcch--hH----HHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626           13 NPRGVLISPGPGAPQDSGI--SL----QTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE   85 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~--~~----~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~   85 (174)
                      ++|||||+|||+++++...  ++    +.+++ ...++|+||||+|||+|+.++||+|.+.+.+...+...   .....+
T Consensus        48 ~~d~iii~Ggp~~~~d~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~alGg~V~~~~~~~~~~~~~---~~~~~~  124 (230)
T d1o1ya_          48 EYSLVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEIGWYF---VEKVSD  124 (230)
T ss_dssp             GCSEEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTCCEEEEEE---EEECCC
T ss_pred             hCCEEEEcCCCcccccchhhhhhHHHHHHHHHHHHhcceEEEeecCHHHHHHHhccccccccccccccccc---cccccc
Confidence            5899999999999987643  33    33333 46689999999999999999999999987554333322   223357


Q ss_pred             CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626           86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV  165 (174)
Q Consensus        86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~  165 (174)
                      +++|.++++.+.++++|.+.++    +|++++++|.++++.+++++..   ++||+|||||.+     ..++++|++...
T Consensus       125 ~~l~~~~~~~~~~~~~H~d~~~----lp~~~~~la~s~~~~~qa~~~~---~~~g~QfHPE~~-----~~~~~~~i~~~~  192 (230)
T d1o1ya_         125 NKFFREFPDRLRVFQWHGDTFD----LPRRATRVFTSEKYENQGFVYG---KAVGLQFHIEVG-----ARTMKRWIEAYK  192 (230)
T ss_dssp             CGGGTTSCSEEEEEEEESEEEC----CCTTCEEEEECSSCSCSEEEET---TEEEESSBSSCC-----HHHHHHHHHHTH
T ss_pred             hhhhccCCccceEEEecceeee----eccchhhhhhhcCCceEEEEec---CEeEEEeCCCCC-----HHHHHHHHHHhH
Confidence            7899999999999999998665    6789999999999999999875   499999999974     567888877654


Q ss_pred             H
Q 030626          166 R  166 (174)
Q Consensus       166 ~  166 (174)
                      .
T Consensus       193 ~  193 (230)
T d1o1ya_         193 D  193 (230)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=3.1e-29  Score=186.89  Aligned_cols=159  Identities=17%  Similarity=0.254  Sum_probs=117.2

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCc--ccc--cccceeEec-------
Q 030626           13 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG--VMH--GKSSLVYYD-------   81 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~--~~~--~~~~~~~~~-------   81 (174)
                      ++||||++||.|.....+.....-+++.+++|+||||+|||+++..+..++...+..  .+.  ....++...       
T Consensus        57 ~~dGIlvPGGFG~RG~eGki~ai~yARen~iPfLGIClGmQ~avIE~ARnvlg~~~A~S~Ef~p~t~~pvi~~~~~~~~~  136 (258)
T d1s1ma1          57 GLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDE  136 (258)
T ss_dssp             TCSEEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHHCCTTCEETTTCSSCSCEEEECTTTCCCT
T ss_pred             ccccEEeecccCcCCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCCCCCCCEEEeccccccc
Confidence            689999999999988888877666778889999999999999999887766654321  111  011111100       


Q ss_pred             ------------------------cCCCCCcccCCC--Cceeecccccceeccc---CCCCCCcEEEEEcCCC-ceEEEe
Q 030626           82 ------------------------EKGEDGLLAGLS--NPFTAGRYHSLVIEKE---SFPSDALEVTAWTEDG-LIMAAR  131 (174)
Q Consensus        82 ------------------------~~~~~~l~~~~~--~~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~-~i~a~~  131 (174)
                                              ...++++...+.  +.+.-.+.|.|.++++   .+...|++++++++|+ .++++|
T Consensus       137 ~~~~~~~~~~~~~GgTmrlG~~~~~l~~~s~~~~~Y~~~~i~ERHRHRYevN~~y~~~le~~gl~~sG~s~dg~~vEiiE  216 (258)
T d1s1ma1         137 NGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIE  216 (258)
T ss_dssp             TSCCC----------CCEEEEEEEEECTTCHHHHHTTSSEEEEEEEECCEECHHHHHHHHHTTCEEEEECSSSCCEEEEE
T ss_pred             CCceeEeecccCccccccCcccchhhhhHHHHHHhcCcceehhhhhcchhhhhhhhhhhhcCCceeeeecCCCCeEEEEE
Confidence                                    001222322222  2345667899999763   3456799999999887 599999


Q ss_pred             eCCCCceEEEecCCCCcCCC-chHHHHHHHHHHHHHHHHhh
Q 030626          132 HKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMIVRKEAAD  171 (174)
Q Consensus       132 ~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~~~  171 (174)
                      .+++|+++|+|||||+.+.+ ...++|..|++++.+.+.++
T Consensus       217 l~~HPffvg~QfHPEf~Srp~~p~PLF~~Fi~Aa~~~~k~~  257 (258)
T d1s1ma1         217 VPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQ  257 (258)
T ss_dssp             CTTSSSEEEESSCGGGTCCTTTCCHHHHHHHHHHHHHHHHC
T ss_pred             eCCCCeEEEecCCccccCCCCCCChHHHHHHHHHHHHHHhc
Confidence            99999999999999998887 46699999999998877654

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=9.4e-28  Score=178.28  Aligned_cols=155  Identities=21%  Similarity=0.229  Sum_probs=113.0

Q ss_pred             CCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCc--ccc--cccceeEec--c----
Q 030626           13 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG--VMH--GKSSLVYYD--E----   82 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~--~~~--~~~~~~~~~--~----   82 (174)
                      ++||||++||.|.....+.....-+++.+++|+||||+|||+++..+..+|..+...  .+.  ....++...  .    
T Consensus        58 ~~dGIlvPGGFG~rG~eGki~ai~yARen~iPfLGIClGmQ~avIEfARnvlgl~~A~s~Ef~~~~~~pvi~~~~e~~~~  137 (250)
T d1vcoa1          58 DVSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGICLGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEV  137 (250)
T ss_dssp             TCSCEEECCCCSSTTHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHTSCCTTCEETTTCTTCSCEEEEESCGGGCC
T ss_pred             cCCeEEecCCCCccchHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCeEEEeeccceec
Confidence            689999999999888888876666678889999999999999999988777665521  011  011111110  0    


Q ss_pred             ---------------CCCCCcccCCC--Cceeecccccceeccc---CCCCCCcEEEEEcCC------CceEEEeeCCCC
Q 030626           83 ---------------KGEDGLLAGLS--NPFTAGRYHSLVIEKE---SFPSDALEVTAWTED------GLIMAARHKKYK  136 (174)
Q Consensus        83 ---------------~~~~~l~~~~~--~~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~------~~i~a~~~~~~~  136 (174)
                                     ..+.++...+.  +.+.-.+.|.|.|+++   .+...+++++++++|      +.++++|.+++|
T Consensus       138 ~~~ggtmRLG~~~~~l~~~S~~~~~Y~~~~i~ERhRHRYevN~~y~~~le~~gl~~sg~~~d~~~~~~~lvEiiEl~~HP  217 (250)
T d1vcoa1         138 EGLGGTMRLGDWPMRIKPGTLLHRLYGKEEVLERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAIELKDHP  217 (250)
T ss_dssp             ---CCCCEEEEEEEEECTTSHHHHHHCCSEEEEEEEESEEECHHHHHHHHHHTEEEEEECCCBTTBSTTCEEEEEETTSS
T ss_pred             cccCccccccceeeeecCCcHHHhhccccEEeehcccceeechhhhHHHHhccccccccCcccccCCCCeEEEEECCCCC
Confidence                           01122222222  3355677899999753   344568999999865      479999999999


Q ss_pred             ceEEEecCCCCcCCC-chHHHHHHHHHHHHHH
Q 030626          137 HLQGVQFHPESIITT-EGKTIVRNFIKMIVRK  167 (174)
Q Consensus       137 ~~~g~QfHPE~~~~~-~~~~l~~~f~~~~~~~  167 (174)
                      +++|+|||||+.+.+ ...++|..|++++.+.
T Consensus       218 ffvgvQfHPEf~Srp~~phPLF~~fi~Aal~~  249 (250)
T d1vcoa1         218 FFLGLQSHPEFKSRPMRPSPPFVGFVEAALAY  249 (250)
T ss_dssp             SEEEESSCGGGGCBTTBCCHHHHHHHHHHHHH
T ss_pred             cEEEecCCccccCCCCCCCccHHHHHHHHHhc
Confidence            999999999998887 5689999999998764

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-26  Score=177.95  Aligned_cols=134  Identities=17%  Similarity=0.321  Sum_probs=90.5

Q ss_pred             CCCEEEeCCCCCCCCCcchh------HHH-H--HHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEec-c
Q 030626           13 NPRGVLISPGPGAPQDSGIS------LQT-V--LELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD-E   82 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~~~~------~~~-i--~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~-~   82 (174)
                      +.||||++||+.+.......      ++. +  .+.++++|+||||+|||+|+.++||++.+.... .++...++... .
T Consensus        59 ~idGillpGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~~gG~~~~~~~~-~~~~~~~~~~~~~  137 (288)
T d1l9xa_          59 SINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLLTATD-TVDVAMPLNFTGG  137 (288)
T ss_dssp             HSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCCEEEE-EEEEEECCEECST
T ss_pred             hcCCeEecCCCCCcccccccccchHHHHHHHHHHHhhCCCCeEEEcHHHHHHHHHhCCEeeccccC-cCCcceeEEecCC
Confidence            57999999998876654321      111 1  235778999999999999999999998776522 22332223222 2


Q ss_pred             CCCCCcccCCC--------Cceeecccccceeccc-----CCCCCCcEEEEEcCCCce---EEEeeCCCCceEEEecCCC
Q 030626           83 KGEDGLLAGLS--------NPFTAGRYHSLVIEKE-----SFPSDALEVTAWTEDGLI---MAARHKKYKHLQGVQFHPE  146 (174)
Q Consensus        83 ~~~~~l~~~~~--------~~~~~~~~H~~~v~~~-----~l~~~~~~~~a~s~~~~i---~a~~~~~~~~~~g~QfHPE  146 (174)
                      ...+.++..++        ....++++|+++|...     ..++.+++++|++.|+.+   ++++++++| ++|+|||||
T Consensus       138 ~~~~~~~~~~~~~~~~~l~~~~~~~~~H~~~v~~~~~~~~~~l~~~~~v~a~s~d~~~e~I~~ie~~~~p-i~GvQfHPE  216 (288)
T d1l9xa_         138 QLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYP-VYGVQWHPE  216 (288)
T ss_dssp             TTTCSTTTTSCHHHHHHHHHSCCEEEEEEEECBHHHHHTCHHHHHHEEEEEEEESSSCEEEEEEEESSSC-EEEESSCTT
T ss_pred             CccceeEeecccchhhhccCCceEEEecccEEEecccchhhhcCCceEEEEEECCCCeEEEEEEEcCCCc-EEEEEcCCC
Confidence            22445555554        2335778899998532     114578999999988764   455677776 899999999


Q ss_pred             Cc
Q 030626          147 SI  148 (174)
Q Consensus       147 ~~  148 (174)
                      +.
T Consensus       217 k~  218 (288)
T d1l9xa_         217 KA  218 (288)
T ss_dssp             HH
T ss_pred             CC
Confidence            63

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.93  E-value=9.1e-27  Score=169.68  Aligned_cols=146  Identities=21%  Similarity=0.319  Sum_probs=95.3

Q ss_pred             CCCEEEeCCCCCCCCCc----chhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCccc-----ccccceeEecc
Q 030626           13 NPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVM-----HGKSSLVYYDE   82 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~----~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~-----~~~~~~~~~~~   82 (174)
                      ++|+||||||+.+....    ..+.+.|++ ..+++|+||||+|||+|+.++++...+......     +..+..+  ..
T Consensus        38 ~~D~lIlPGG~~~~~~~~~~~~~~~~~I~~~~~~g~pilGIC~G~Qll~~~~~g~~~~~lg~~~~~~~~~~~~~~~--~~  115 (195)
T d2nv0a1          38 EVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEIAGSDNPHLGLLNVVVERNSFGRQV--DS  115 (195)
T ss_dssp             GCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBCCC----CCCCCSCEEEECCCSCTTT--SE
T ss_pred             hCCEEEECCCCccHHHHHhhhchhcchhhhhhhhcceeeeccccHHHHHhhhcccccccccccccccccccccccc--ee
Confidence            58999999976543211    123455554 667899999999999999988775443221000     0000000  00


Q ss_pred             CCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHH
Q 030626           83 KGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK  162 (174)
Q Consensus        83 ~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~  162 (174)
                      ...+.++.+++..+.++++|++.+..   ++++++++|.+.+. +.|++..   +++|+|||||++.   +.+++++|++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~h~~~~~~---~~~~~~vla~~~~~-~~a~~~~---ni~g~QFHPE~s~---~~~~~~~F~~  185 (195)
T d2nv0a1         116 FEADLTIKGLDEPFTGVFIRAPHILE---AGENVEVLSEHNGR-IVAAKQG---QFLGCSFHPELTE---DHRVTQLFVE  185 (195)
T ss_dssp             EEEEECCTTCSSCEEEEEESCCEEEE---ECTTCEEEEEETTE-EEEEEET---TEEEESSCTTSSS---CCHHHHHHHH
T ss_pred             eeeeecccCCCCCceEEEEeeeEEEe---cCCCceeeeeECCE-EEEEEEC---CEEEEEeCCcccC---CcHHHHHHHH
Confidence            11234566777778888889988876   66889999987654 4467653   5999999999853   3468899999


Q ss_pred             HHHHHHHh
Q 030626          163 MIVRKEAA  170 (174)
Q Consensus       163 ~~~~~~~~  170 (174)
                      .+++.+.+
T Consensus       186 ~~~~~k~~  193 (195)
T d2nv0a1         186 MVEEYKQK  193 (195)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99887654

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.91  E-value=4.2e-26  Score=166.96  Aligned_cols=145  Identities=21%  Similarity=0.327  Sum_probs=95.1

Q ss_pred             CCCEEEeCCCCCCCCCc----chhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEec------
Q 030626           13 NPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD------   81 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~----~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~------   81 (174)
                      ++|+||||||+.+....    ..+.+.|++ ...++|+||||+|||+|+...++...+..     +........      
T Consensus        43 ~~D~lIlPGG~~~~~~~~l~~~~l~~~I~~~~~~gkPiLGIClG~Qll~~~~~~~~~~~l-----g~~~~~v~~~~~~~~  117 (202)
T d1q7ra_          43 GLDGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKRIVGYDEPHL-----GLMDITVERNSFGRQ  117 (202)
T ss_dssp             TCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEEEESSCCCCC-----CCEEEEEECHHHHCC
T ss_pred             cCCEEEECCCCcHHHHHHhhhhHHHHHHhhhccccceeeeeehhhHHhhhhccccceeec-----ccccccccccccccc
Confidence            68999999986543221    123455554 57889999999999999876554322211     111100000      


Q ss_pred             --cCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHH
Q 030626           82 --EKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRN  159 (174)
Q Consensus        82 --~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~  159 (174)
                        ....+..+..++.....+.+|++.+..   +++++.++|+.++ .+.+++..   +++|+|||||++   .+.++++|
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~-~~~a~~~g---ni~G~QFHPEkS---~~~~il~~  187 (202)
T d1q7ra_         118 RESFEAELSIKGVGDGFVGVFIRAPHIVE---AGDGVDVLATYND-RIVAARQG---QFLGCSFHPELT---DDHRLMQY  187 (202)
T ss_dssp             CCCEEEEEEETTTEEEEEEEESSCCEEEE---ECTTCEEEEEETT-EEEEEEET---TEEEESSCGGGS---SCCHHHHH
T ss_pred             cccceeccccccccCCcceEEEeeccccc---cccceeEEeecCC-EEEEEEeC---CEEEEEeCCccC---CChHHHHH
Confidence              000122344455566677788887776   6788999998765 45566643   599999999985   35789999


Q ss_pred             HHHHHHHHHHhhc
Q 030626          160 FIKMIVRKEAADS  172 (174)
Q Consensus       160 f~~~~~~~~~~~~  172 (174)
                      |++.+++.+...|
T Consensus       188 Fl~~~~~~k~~~~  200 (202)
T d1q7ra_         188 FLNMVKEAKMASS  200 (202)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcc
Confidence            9999998877654

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=2e-25  Score=162.92  Aligned_cols=136  Identities=17%  Similarity=0.136  Sum_probs=78.4

Q ss_pred             cCCCEEEeCCCCCCCCCc------chhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCc-------------cc
Q 030626           12 KNPRGVLISPGPGAPQDS------GISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG-------------VM   71 (174)
Q Consensus        12 ~~~dgiii~GG~~~~~~~------~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~-------------~~   71 (174)
                      .++|+|||| |+|+..+.      ..+.+.|++ ...++|+||||+|||+|+....+........             ..
T Consensus        41 ~~~D~lIlP-G~G~f~~~~~~l~~~~~~~~i~~~~~~~~PiLGIClG~QlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (200)
T d1k9vf_          41 DLYDLLFIP-GVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSRRLP  119 (200)
T ss_dssp             CCCSEEEEC-CCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTEEEETTSTTCCCCCCEEEEEEECSCSSCS
T ss_pred             hccCeEEEc-ChHHHHHHHHhhhcccccccccccccccceEEEEecceeEEeeecccCcccccccccccccccccccccc
Confidence            358999995 45543221      123345554 5678999999999999986542221110000             00


Q ss_pred             ccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcC-CCceE-EEeeCCCCceEEEecCCCCcC
Q 030626           72 HGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE-DGLIM-AARHKKYKHLQGVQFHPESII  149 (174)
Q Consensus        72 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~-~~~i~-a~~~~~~~~~~g~QfHPE~~~  149 (174)
                      +..|..         ..+.........++.|++.+..   . +...+..++. +..+. +++..   +++|+|||||+ +
T Consensus       120 ~~~~~~---------~~~~~~~~~~~~~~~hs~~~~~---~-~~~~~~~~~~~~~~~~a~v~~~---ni~GvQFHPEk-S  182 (200)
T d1k9vf_         120 HMGWNE---------VIFKDTFPNGYYYFVHTYRAVC---E-EEHVLGTTEYDGEIFPSAVRKG---RILGFQFHPEK-S  182 (200)
T ss_dssp             EEEEEE---------EEESSSSCCEEEEEEESEEEEE---C-GGGEEEEEEETTEEEEEEEEET---TEEEESSBGGG-S
T ss_pred             cccccc---------ccccccCCceEEEEeeeeeecc---c-ccceEEEEEECCeEEEEEEEcC---CEEEEeCCCcc-c
Confidence            111111         1111112344567788888764   2 3333333333 33343 45543   49999999998 4


Q ss_pred             CCchHHHHHHHHHHHH
Q 030626          150 TTEGKTIVRNFIKMIV  165 (174)
Q Consensus       150 ~~~~~~l~~~f~~~~~  165 (174)
                      ++.|.+||+||++.+.
T Consensus       183 ~~~G~~ll~nFl~~~~  198 (200)
T d1k9vf_         183 SKIGRKLLEKVIECSL  198 (200)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHhhhh
Confidence            6789999999999865

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.87  E-value=9.4e-23  Score=150.23  Aligned_cols=152  Identities=14%  Similarity=0.144  Sum_probs=87.0

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCcch------hHHHHH-H-cCCCCcEEeehHhHHHHHHHhCCeeccCCCccc------
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDSGI------SLQTVL-E-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVM------   71 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~~~------~~~~i~-~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~------   71 (174)
                      .++|.  ++|+||||||.........      ....+. . ...++|+||||+|||+|+...++..........      
T Consensus        37 ~~~l~--~~D~lIlPGgg~~~~~~~~~~~~~~~~~~i~~~~~~~gkPilGIC~G~QlL~~~~~~~~~~~~~~~~~~~~~~  114 (218)
T d2abwa1          37 VHDLG--LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGL  114 (218)
T ss_dssp             HHHHH--TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEEEECCCSCCTTGGGSCCCCE
T ss_pred             HHHHh--hCCEEEEcCCCccHHHHHHHHHhccchHHHHHHHHHcCCeEEEecHHHHHHHHhccCCccccccccccccccc
Confidence            45564  6899999987543221111      112232 2 457899999999999998765443322211000      


Q ss_pred             --------cccc-ce--eEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcC---C--CceEEEeeCCC
Q 030626           72 --------HGKS-SL--VYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE---D--GLIMAARHKKY  135 (174)
Q Consensus        72 --------~~~~-~~--~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~---~--~~i~a~~~~~~  135 (174)
                              .+.. ..  ........+..+.........++.|++.+..     .....+++..   .  ..|+|++..  
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~h~~~~~~-----~~~~~~a~~~~~~~g~~~i~av~~~--  187 (218)
T d2abwa1         115 DITICRNFYGSQNDSFICSLNIISDSSAFKKDLTAACIRAPYIREILS-----DEVKVLATFSHESYGPNIIAAVEQN--  187 (218)
T ss_dssp             EEEEECCC----CCEEEEECEECCCCTTCCTTCEEEEESCCEEEEECC-----TTCEEEEEEEETTTEEEEEEEEEET--
T ss_pred             cccceecccCCcccccccceeeccCCccccCcccceeEEeeEEEEeec-----CChhhheeeccccCCCeEEEEEecC--
Confidence                    0000 00  0001112333444444445567778877643     4555665432   2  237777654  


Q ss_pred             CceEEEecCCCCcCCCchHHHHHHHHHHHHHHHHh
Q 030626          136 KHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEAA  170 (174)
Q Consensus       136 ~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~~~~  170 (174)
                       +++|+|||||++   ...+++++|++.+++.+.+
T Consensus       188 -ni~G~QFHPE~s---~d~r~~~~F~~~v~~~~~~  218 (218)
T d2abwa1         188 -NCLGTVFHPELL---PHTAFQQYFYEKVKNYKYS  218 (218)
T ss_dssp             -TEEEESSCGGGS---SCCHHHHHHHHHHHHHHHH
T ss_pred             -CEEEEEcCCeec---CCchHHHHHHHHHHhhhcC
Confidence             599999999984   2346899999999987653

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=99.86  E-value=1.9e-22  Score=153.49  Aligned_cols=153  Identities=13%  Similarity=0.035  Sum_probs=108.6

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCC--cchhHHHH----HH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCccccccccee
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQD--SGISLQTV----LE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLV   78 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~--~~~~~~~i----~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~   78 (174)
                      .+++...++||+||+|+|.+..+  ...++..+    .. ....+|+||||+|+|+++.++||.+.+...+...|.....
T Consensus        76 ~~~i~~~~fDglIITGap~~~~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~lgGi~k~~~~~k~~Gv~~~~  155 (281)
T d2ghra1          76 FRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKMFGVFEHE  155 (281)
T ss_dssp             HHHHTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEEEEE
T ss_pred             HHHhhcccCCEEEEeCCCCCcccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHHhCCCccccCCCceEEEEEEe
Confidence            46777788999999999998854  33344332    22 3467999999999999999999988776544445544333


Q ss_pred             EeccCCCCCcccCCCCceeecccccceecccCC-CCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHH
Q 030626           79 YYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIV  157 (174)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~  157 (174)
                      ...  ..++++.++++.+.+.++|...+..+.+ ..++..+++.|+++-+.++...+. +++++|+|||+    +...|.
T Consensus       156 ~~~--~~~pL~~g~~d~f~~p~Sr~~~~~~d~v~~~p~l~vLa~S~~~g~~~~~~~~~-~~~~iQgHPEY----d~~tL~  228 (281)
T d2ghra1         156 VRE--QHVKLLQGFDELFFAPHSRHTEVRESDIREVKELTLLANSEEAGVHLVIGQEG-RQVFALGHSEY----SCDTLK  228 (281)
T ss_dssp             ECC--SSCGGGTTCCSEEEEEEEEEEECCHHHHHTCTTEEEEEEETTTEEEEEEEGGG-TEEEECSCTTC----CTTHHH
T ss_pred             ecc--CCChhccCCcchhheeeeecccCCHHHHhhCCCceEEeecCCcccEEEEECCC-CEEEEeCCCCc----chhHHH
Confidence            222  4679999999999988887644432211 346788888888777777776654 49999999998    344565


Q ss_pred             HHHHHHHH
Q 030626          158 RNFIKMIV  165 (174)
Q Consensus       158 ~~f~~~~~  165 (174)
                      +.+.+.+.
T Consensus       229 ~EY~RD~~  236 (281)
T d2ghra1         229 QEYERDRD  236 (281)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            65555443

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=4.1e-21  Score=138.61  Aligned_cols=141  Identities=15%  Similarity=0.049  Sum_probs=74.4

Q ss_pred             CCCEEEeCCCCCCCCC-----cchhHHHHH-HcCCCCcEEeehHhHHHHHHHhCCeec-------cCCCcc--cccccce
Q 030626           13 NPRGVLISPGPGAPQD-----SGISLQTVL-ELGPTVPLFGVCMGLQCIGEAFGGKIV-------RSPLGV--MHGKSSL   77 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~-----~~~~~~~i~-~~~~~~PilGIC~G~Qll~~~~gg~v~-------~~~~~~--~~~~~~~   77 (174)
                      ++|++|+|||+.....     .......+. ....++|+||||+|||+|+........       ......  .......
T Consensus        38 ~~d~lIlpG~g~~~~~~~~~~~~~~~~~~~~~~~~g~pilGiClG~qll~~~~~e~~~~~g~~~~~~~~~~~~~~~~~~~  117 (195)
T d1ka9h_          38 EADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEGSEEAPGVRGLGLVPGEVRRFRAGRVPQM  117 (195)
T ss_dssp             SCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSEETTSTTCCCCCSSSSEEEECCSSSSSEE
T ss_pred             HHhhhhcCCCccccchhhhccccCCcccccccccccchhhhhhhhhheeeeccccccccCCceeeecccccccccccccc
Confidence            5899999887643211     111223333 355689999999999999864221110       000000  0000000


Q ss_pred             eEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCc-eEEEeeCCCCceEEEecCCCCcCCCchHHH
Q 030626           78 VYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGL-IMAARHKKYKHLQGVQFHPESIITTEGKTI  156 (174)
Q Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~-i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l  156 (174)
                      .... ......... ......++.|++.+..   . +.....+...+.. +++++ ++  ++||+|||||+ ++..|.+|
T Consensus       118 ~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~a~v~-~~--ni~GvQFHPEk-S~~~G~~l  187 (195)
T d1ka9h_         118 GWNA-LEFGGAFAP-LTGRHFYFANSYYGPL---T-PYSLGKGEYEGTPFTALLA-KE--NLLAPQFHPEK-SGKAGLAF  187 (195)
T ss_dssp             EEEE-CEECGGGGG-GTTCEEEEEESEECCC---C-TTCCEEEEETTEEEEEEEE-CS--SEEEESSCTTS-SHHHHHHH
T ss_pred             cccc-ccccccccc-ccccccccccceeeec---c-ccceeeeecCCceEEEEEE-cC--CEEEEeCCccc-ccHhHHHH
Confidence            0000 000011111 1234456677777654   2 3333344444444 45554 33  59999999998 45789999


Q ss_pred             HHHHHHH
Q 030626          157 VRNFIKM  163 (174)
Q Consensus       157 ~~~f~~~  163 (174)
                      ++||+++
T Consensus       188 L~nF~~~  194 (195)
T d1ka9h_         188 LALARRY  194 (195)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999975

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.39  E-value=1.5e-12  Score=97.29  Aligned_cols=150  Identities=21%  Similarity=0.251  Sum_probs=88.5

Q ss_pred             CCCEEEeCCCCCCCCCc--ch-hH----------HHHHH--cCCCCcEEeehHhHHHHHHH--h-CC-----eeccCCCc
Q 030626           13 NPRGVLISPGPGAPQDS--GI-SL----------QTVLE--LGPTVPLFGVCMGLQCIGEA--F-GG-----KIVRSPLG   69 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~--~~-~~----------~~i~~--~~~~~PilGIC~G~Qll~~~--~-gg-----~v~~~~~~   69 (174)
                      ++|+|+|+||...-+..  +. +.          ..+.+  ...++|+||||.|+|+|.+.  + .+     ++..+...
T Consensus        51 ~~~~lvipGGFSygD~l~ag~~~a~~~~~~~~~~~~~~~f~~~~~~~iLGICNGfQiL~elg~l~pg~~~~~~~~~N~s~  130 (262)
T d1t3ta2          51 NFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGSELWPRFVRNHSD  130 (262)
T ss_dssp             GCSEEEECCBCGGGGTTSTTHHHHHHHHHSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTCTTCCEEECCTTS
T ss_pred             ccceEEEeccccccccccchhHHHhhhhhhhHHHHHHHHHhhcCCceEEeechHHHHHHHhcccCCCcccCcccccccCC
Confidence            58999999987644332  22 11          11111  15689999999999999974  2 12     23333323


Q ss_pred             ccccccceeEeccCCCCCcccCCC-Cceeecccccce---eccc----CCCCCCcEEEEEc-------------CCC---
Q 030626           70 VMHGKSSLVYYDEKGEDGLLAGLS-NPFTAGRYHSLV---IEKE----SFPSDALEVTAWT-------------EDG---  125 (174)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~---v~~~----~l~~~~~~~~a~s-------------~~~---  125 (174)
                      .....|..+.+. ..++.+++.+. ..+.++..|+..   +..+    .|..++..++-+.             +++   
T Consensus       131 rfe~rw~~~~v~-~~~s~~~~~~~g~~l~ipiaHgEG~f~~~~~~~l~~L~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~  209 (262)
T d1t3ta2         131 RFEARFSLVEVT-QSPSLLLQGMVGSQMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPN  209 (262)
T ss_dssp             SCEEEEEEEEEC-CCSCGGGTTCTTCEEEEEEEESSCEEECSSHHHHHHHHHTTCEEEEEBCTTSCBCCSTTTSSSCCGG
T ss_pred             eEEEEEeeeccc-cccChhhccCCCcceEeeeecCCCCcccCCHHHHHHhhhccceEEEEEcCCCccccccCCCCCCCcc
Confidence            223334334433 33566777765 346666667654   2111    1223444444442             122   


Q ss_pred             ceEEEeeCCCCceEEEecCCCCcCC--------------CchHHHHHHHHHHH
Q 030626          126 LIMAARHKKYKHLQGVQFHPESIIT--------------TEGKTIVRNFIKMI  164 (174)
Q Consensus       126 ~i~a~~~~~~~~~~g~QfHPE~~~~--------------~~~~~l~~~f~~~~  164 (174)
                      .|+++...++. ++|++.||||...              ..+..||+|-++.+
T Consensus       210 ~IAGIcs~~Gr-vlgmMPHPER~~~~~q~~~~~~~~~~~spw~~iF~na~~~v  261 (262)
T d1t3ta2         210 GITAVTTENGR-VTIMMPHPERVFRTVANSWHPENWGEDSPWMRIFRNARKQL  261 (262)
T ss_dssp             GEEEEECTTSS-EEEESSBGGGSSBGGGCSSCCTTCCSBCTTHHHHHHHHHHH
T ss_pred             ceeEEECCCCC-EEEEcCChhHhhhccccCcCCcccCCCChHHHHHHHHHHhc
Confidence            39999999875 9999999998421              13568888877654

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=8.5e-06  Score=58.49  Aligned_cols=55  Identities=15%  Similarity=0.143  Sum_probs=40.7

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCCCc-------------chhHHHHHH-cCCCCcEEeehHhHHHHHHHhC
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQDS-------------GISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG   60 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~~~-------------~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~g   60 (174)
                      ++++...+||+|+||||.+...+.             ..+.+.+++ ...++|+-+||.|-++|+.+.+
T Consensus        78 l~~v~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~~~  146 (217)
T d1vhqa_          78 LAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFD  146 (217)
T ss_dssp             GGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCS
T ss_pred             hHHCCHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhc
Confidence            344555679999999998864322             234566665 5678999999999999998754

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=2.8e-05  Score=53.46  Aligned_cols=52  Identities=15%  Similarity=0.227  Sum_probs=37.9

Q ss_pred             HHHHhcCCCEEEeCCCCCCCC--CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626            7 VSYCRKNPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus         7 ~~~~~~~~dgiii~GG~~~~~--~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      +++...+||+|+++||.+..+  .....++.+++ ..+++||.+||-|-.+|+.+
T Consensus        58 ~~~~~~~yDalivpGG~~~~~l~~~~~~~~~i~~~~~~~k~i~aiC~g~~~La~~  112 (170)
T d1oi4a1          58 DEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA  112 (170)
T ss_dssp             GGCCGGGCSEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred             HHCChhhceEEEEccchhhhhhccChHHHHHHHHHhhcCCeeeecccchHHHhhh
Confidence            344445789999999965332  33445566665 66789999999999999975

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.15  E-value=5.1e-05  Score=53.03  Aligned_cols=52  Identities=12%  Similarity=0.072  Sum_probs=37.2

Q ss_pred             HHHHhcCCCEEEeCCCCCCC-CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626            7 VSYCRKNPRGVLISPGPGAP-QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus         7 ~~~~~~~~dgiii~GG~~~~-~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      +++...++|.|||+||.+.. .....+.+.+++ ..++++|.+||-|-.+|+.+
T Consensus        57 ~~~~~~~~D~liipGG~~~~~~~~~~l~~~lr~~~~~~~~i~aiC~g~~~La~a  110 (188)
T d2fexa1          57 DALDPVDIDALVIPGGLSWEKGTAADLGGLVKRFRDRDRLVAGICAAASALGGT  110 (188)
T ss_dssp             GGCCTTTCSEEEECCBSHHHHTCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred             HHCChhhccEEEecCCccccccccHHHHHHHHHHHHhCCEEEEecchhHHHHHc
Confidence            34444579999999997632 222345566654 56789999999999999864

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.11  E-value=5.3e-05  Score=51.71  Aligned_cols=51  Identities=12%  Similarity=0.197  Sum_probs=37.6

Q ss_pred             HHHhcCCCEEEeCCCCCCCC--CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626            8 SYCRKNPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus         8 ~~~~~~~dgiii~GG~~~~~--~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ++...++|+||++||.+...  ......+.+++ ..+++|+.+||-|..+|+.+
T Consensus        56 ~~~~~~~d~viipGg~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a  109 (166)
T d1g2ia_          56 KVNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQILISA  109 (166)
T ss_dssp             GCCGGGCSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTTHHHHHH
T ss_pred             HcCcccccEEEEecccchhhhccChHHHHHHHHHHhcCCeeeeccccchhhhhc
Confidence            34344689999999976432  23445566665 56789999999999999986

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=96.97  E-value=6e-05  Score=51.00  Aligned_cols=48  Identities=15%  Similarity=0.052  Sum_probs=35.4

Q ss_pred             hcCCCEEEeCCCCCCC-CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           11 RKNPRGVLISPGPGAP-QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        11 ~~~~dgiii~GG~~~~-~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ..+||+|||+||.+.. ......++.+++ ..+++||-+||-|.++|+.+
T Consensus        62 ~~~yDaliiPGG~~~~l~~~~~~~~~i~e~~~~~K~I~aic~g~~~La~a  111 (156)
T d1p80a1          62 SLTVDAVIVPCGNIADIADNGDANYYLMEAYKHLKPIALAGDARKFKATI  111 (156)
T ss_dssp             GGGCSEEEECCSCTHHHHTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGTT
T ss_pred             cccCCEEEeeCCchHHHhcchHHHHHHHHHHHcCCeEEEECchHHHHHHc
Confidence            3468999999996532 122344566665 67889999999999999755

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00012  Score=50.86  Aligned_cols=53  Identities=15%  Similarity=0.113  Sum_probs=38.2

Q ss_pred             HHHHHh-cCCCEEEeCCCCCCCC---CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626            6 LVSYCR-KNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus         6 ~~~~~~-~~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      .+++.. .+||+|+|+||.+...   +...+.+.+++ ..+++|+.+||-|..+|+.+
T Consensus        56 l~d~~~~~~~D~liipGG~~~~~~l~~~~~l~~~lr~~~~~~k~i~aiC~G~~~La~a  113 (186)
T d1p5fa_          56 LEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAH  113 (186)
T ss_dssp             HHHHHHTCCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred             hhccCCcccccEEEEecCccccccccchHHHHHHHHHhhccccceeecccCcchhhhc
Confidence            445544 4799999999975432   23344555654 56789999999999999975

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=96.83  E-value=9.7e-05  Score=51.03  Aligned_cols=49  Identities=16%  Similarity=0.224  Sum_probs=37.0

Q ss_pred             HhcCCCEEEeCCCCCCCC---CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           10 CRKNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        10 ~~~~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ...++|+++++||.+...   ......+.+++ ..+++||.+||-|.++|+.+
T Consensus        61 ~~~~~dalivpgg~~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~G~~~La~a  113 (184)
T d1sy7a1          61 RSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKA  113 (184)
T ss_dssp             CGGGSSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred             ccccceEEEEeeccccccccccccchhHHHHHHHhcCCceEEechHHHHHHHc
Confidence            334689999999975432   33445566665 56789999999999999986

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00011  Score=51.64  Aligned_cols=53  Identities=15%  Similarity=0.193  Sum_probs=38.1

Q ss_pred             HHHHHhcCCCEEEeCCCCCCCC---CcchhHHHHHH-cCCCCcEEeehHh-HHHHHHH
Q 030626            6 LVSYCRKNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMG-LQCIGEA   58 (174)
Q Consensus         6 ~~~~~~~~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PilGIC~G-~Qll~~~   58 (174)
                      .+++...++|+|+++||.+...   +...+.+.+++ ..+++|+.+||-| ..+|+.+
T Consensus        58 ~~d~~~~d~D~liiPGG~~~~~~l~~~~~l~~~lr~~~~~gk~i~aiC~g~a~lLa~a  115 (195)
T d2ab0a1          58 LVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH  115 (195)
T ss_dssp             HHHHTTSCCSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred             hHHcCcccceEEEEccccCccccccccHHHHHHHHHHhhccceeeeeeccchhhhhhc
Confidence            4566667899999999965332   23445566665 5688999999999 6777654

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.73  E-value=0.00027  Score=50.50  Aligned_cols=50  Identities=12%  Similarity=0.103  Sum_probs=36.8

Q ss_pred             HHHhcCCCEEEeCCCCCCCC---CcchhHHHHHH-cCCCCcEEeehHhHHHHHH
Q 030626            8 SYCRKNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGE   57 (174)
Q Consensus         8 ~~~~~~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~   57 (174)
                      ++...+||+|+|+||.+...   +...+.+.+++ ..+++|+-+||.|-++|..
T Consensus        81 ~v~~~dYd~v~iPGG~g~~~~l~~~~~l~~li~~~~~~~k~iaAIChgp~~l~~  134 (221)
T d1u9ca_          81 KDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVN  134 (221)
T ss_dssp             GGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTT
T ss_pred             HCCHhHCCEEEeCCCCchhhcchhhHHHHHHHHHHHhccCcceeecccceeeec
Confidence            34445799999999998432   33444555554 5678999999999988874

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.00047  Score=49.70  Aligned_cols=51  Identities=16%  Similarity=0.094  Sum_probs=36.6

Q ss_pred             HHHhcCCCEEEeCCCCCCCCC---cchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626            8 SYCRKNPRGVLISPGPGAPQD---SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus         8 ~~~~~~~dgiii~GG~~~~~~---~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      ++...+||+|+|+||.+...+   ...+.+.+++ ..+++||-.||.|-.+|+.+
T Consensus        92 ~v~~~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~  146 (236)
T d1qvwa_          92 EVNADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGL  146 (236)
T ss_dssp             GCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred             hCCHhHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHH
Confidence            344457999999999885432   2334455554 67889999999999877643

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.0031  Score=46.37  Aligned_cols=46  Identities=11%  Similarity=0.093  Sum_probs=34.8

Q ss_pred             CCCEEEeCCCCCCCCCc---chhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626           13 NPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCIGEA   58 (174)
Q Consensus        13 ~~dgiii~GG~~~~~~~---~~~~~~i~~-~~~~~PilGIC~G~Qll~~~   58 (174)
                      +||+|+|+||.|...+.   ..+.+.++. ...++||..||.|-..|..+
T Consensus       141 dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a  190 (279)
T d1n57a_         141 EYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLAL  190 (279)
T ss_dssp             SEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGG
T ss_pred             cccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhc
Confidence            79999999999865543   234455544 56889999999998887654

>d1ehsa_ g.2.1.1 (A:) Heat-stable enterotoxin B {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Toxic hairpin
superfamily: Heat-stable enterotoxin B
family: Heat-stable enterotoxin B
domain: Heat-stable enterotoxin B
species: Escherichia coli [TaxId: 562]

Probab=80.75  E-value=0.12  Score=25.59  Aligned_cols=17  Identities=35%  Similarity=0.520  Sum_probs=13.0

Q ss_pred             cEEeehHhHHHHHHHhC
Q 030626           44 PLFGVCMGLQCIGEAFG   60 (174)
Q Consensus        44 PilGIC~G~Qll~~~~g   60 (174)
                      -.-|-|+|.|+|..+-|
T Consensus        31 gtagacfgaqimvaakg   47 (48)
T d1ehsa_          31 GTAGACFGAQIMVAAKG   47 (48)
T ss_dssp             SSCCTTTTTHHHHTTTT
T ss_pred             CccccccchhHhhhccc
Confidence            45688999999986543