Citrus Sinensis ID: 030628

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR
Secondary Structure (PSIPRED)
cHHHHHHHHccccccccEEEHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHccHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHccccEEEEEEEcccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mmeqlskrkkgvtfgsfkvskeikfadkqpifpwgprfaksspqdIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLksfepavsptyteegdddgRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYaggfipaflfdnqelivtgSSAVLLFIMASYYR
Flexible Loop (DISEMBL)
mmeqlskrkkgvtfgsfkvskeikfadkqpifpWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKsfepavsptyteegdddgRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR
Low Complexity Region (SEG)
MMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR
Disordered region (IsUnstruct)
************TFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAV*************ALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYY*
Disordered Region (DISOPRED)
*****************KVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFE********************GKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR
Disordered Region (DISEMBL)
**********GVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR
Disordered Region (DISPRO)
***QLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
224144561	285	predicted protein [Populus trichocarpa]	1.0	0.610	0.752	1e-74
224123536	253	predicted protein [Populus trichocarpa]	1.0	0.687	0.758	5e-74
225453038	285	PREDICTED: uncharacterized protein LOC10	1.0	0.610	0.752	2e-73
358248094	282	uncharacterized protein LOC100814672 [Gl	1.0	0.617	0.758	5e-73
449465818	285	PREDICTED: uncharacterized protein LOC10	1.0	0.610	0.735	6e-72
356505987	282	PREDICTED: uncharacterized protein LOC10	1.0	0.617	0.747	2e-71
217075548	285	unknown [Medicago truncatula]	1.0	0.610	0.729	2e-68
297849170	294	heat shock protein binding protein [Arab	1.0	0.591	0.701	2e-65
18390922	294	Chloroplast J-like domain 1-containing p	1.0	0.591	0.695	3e-65
21593057	294	unknown [Arabidopsis thaliana]	1.0	0.591	0.695	4e-65

>gi|224144561|ref|XP_002325333.1| predicted protein [Populus trichocarpa] gi|222862208|gb|EEE99714.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 131/174 (75%), Positives = 156/174 (89%)

Query: 1   MMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWI 60
           MM QLS RKKGVT+GSFKV+K+IK+ADKQP+ PWGPRFAKSS  D+RINLAISAAFTAWI
Sbjct: 112 MMAQLSNRKKGVTYGSFKVAKDIKYADKQPVVPWGPRFAKSSENDMRINLAISAAFTAWI 171

Query: 61  AIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLAL 120
            IKR AEYKPLQFLAFAFVYR FEKLK+FEP VSPTY+E+G+D+GR LR+GKR+LR LAL
Sbjct: 172 LIKRNAEYKPLQFLAFAFVYRIFEKLKTFEPPVSPTYSEDGEDEGRTLRLGKRILRALAL 231

Query: 121 VFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR 174
           VFG I  +SLAYTGILNLIE AG +IPAFL++NQEL++T +++ +L+I+ASYYR
Sbjct: 232 VFGSITFASLAYTGILNLIEMAGSYIPAFLYNNQELLITTATSAILYILASYYR 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123536|ref|XP_002319104.1| predicted protein [Populus trichocarpa] gi|222857480|gb|EEE95027.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (720), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 132/174 (75%), Positives = 155/174 (89%)

Query: 1   MMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWI 60
           MM QLS RKKGVT+GSFKVSK+IK+ADKQPI PWGPRF+KSS  D+RINLAIS AFTAWI
Sbjct: 80  MMAQLSNRKKGVTYGSFKVSKDIKYADKQPIVPWGPRFSKSSENDMRINLAISVAFTAWI 139

Query: 61  AIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLAL 120
            IKR AEYKPLQFLAFAFVYR FEKLK+FEP VS TYTEEG+D+GR LR+GKR+LR LAL
Sbjct: 140 LIKRSAEYKPLQFLAFAFVYRIFEKLKAFEPPVSQTYTEEGEDEGRTLRLGKRILRSLAL 199

Query: 121 VFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR 174
           VFG +A +SLAYTGILNLIE AG +IP FL++NQEL++T +++V+L+I+ASYYR
Sbjct: 200 VFGSVAFASLAYTGILNLIEMAGSYIPVFLYNNQELLITTATSVILYILASYYR 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453038|ref|XP_002266453.1| PREDICTED: uncharacterized protein LOC100243269 [Vitis vinifera] gi|302143637|emb|CBI22390.3| unnamed protein product [Vitis vinifera]

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 131/174 (75%), Positives = 155/174 (89%)

Query: 1   MMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWI 60
           MM QL+ RKKG+TFGSFKVSK+IK+ADKQPI PW PRF KSS  D+RIN+AISA FTAWI
Sbjct: 112 MMAQLTNRKKGMTFGSFKVSKDIKYADKQPIVPWAPRFTKSSVNDMRINMAISAVFTAWI 171

Query: 61  AIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLAL 120
            IKR AE+KPLQFLAFA+VYR FEKLK+FEP VSPT+TE+G+D+GR LRMGKRLLR LAL
Sbjct: 172 LIKRNAEWKPLQFLAFAYVYRIFEKLKAFEPPVSPTFTEDGEDEGRTLRMGKRLLRSLAL 231

Query: 121 VFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR 174
           VF  IAVSSL++TG+LNLIE+ G FIPAFL++NQELIV+ S+AV+L+IMASY+R
Sbjct: 232 VFSCIAVSSLSFTGLLNLIEFVGSFIPAFLYNNQELIVSASTAVMLYIMASYFR 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248094|ref|NP_001240067.1| uncharacterized protein LOC100814672 [Glycine max] gi|255638094|gb|ACU19361.1| unknown [Glycine max]

 Score =  278 bits (712), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 132/174 (75%), Positives = 150/174 (86%)

Query: 1   MMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWI 60
           MM QLS RKKGVTFGSFKVSKEIK+ADK P+ PWGPRF KSS  D+RINLAISA FTAWI
Sbjct: 109 MMAQLSNRKKGVTFGSFKVSKEIKYADKLPVIPWGPRFTKSSQNDMRINLAISAVFTAWI 168

Query: 61  AIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLAL 120
            +KR AEYKPLQFLAFAFVYR FEKLK+FE  V+P Y EEG+D G  LRMGKRLLR LAL
Sbjct: 169 LVKRSAEYKPLQFLAFAFVYRLFEKLKTFESPVTPKYNEEGEDTGEGLRMGKRLLRSLAL 228

Query: 121 VFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR 174
           VFG +A+SSLAYT ILN+IE+AGGFIP  L+++QELI+T SSA++L+IMASYYR
Sbjct: 229 VFGCVAISSLAYTFILNIIEFAGGFIPTLLYNSQELIITTSSALMLYIMASYYR 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465818|ref|XP_004150624.1| PREDICTED: uncharacterized protein LOC101213790 [Cucumis sativus]

 Score =  275 bits (703), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 128/174 (73%), Positives = 151/174 (86%)

Query: 1   MMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWI 60
           MM Q + RKKGVTFGS KVSK+IK+AD QPI PWGPR +KSSP+D++IN+AISA FTAW+
Sbjct: 112 MMAQFTNRKKGVTFGSVKVSKDIKYADNQPIVPWGPRSSKSSPRDMQINMAISAVFTAWV 171

Query: 61  AIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLAL 120
            IK  AEYKPLQFLAFAFVYR FEKLK+FEPAVSP++TE+G+D GR +RMGKRLLR LAL
Sbjct: 172 LIKGSAEYKPLQFLAFAFVYRIFEKLKAFEPAVSPSFTEDGEDSGRGIRMGKRLLRSLAL 231

Query: 121 VFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR 174
           VFG IAV SL YTGILN IE+ G +IP FL++NQEL+VT SSA++L+IMASYYR
Sbjct: 232 VFGCIAVISLGYTGILNFIEFLGNYIPEFLYNNQELLVTSSSALMLYIMASYYR 285

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505987|ref|XP_003521770.1| PREDICTED: uncharacterized protein LOC100805399 [Glycine max]

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/174 (74%), Positives = 148/174 (85%)

Query: 1   MMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWI 60
           MM QLS RKKGVTFGSFKVSKEIK+ADK P+ PWGPR  KSS  D+RINLAISA FTAWI
Sbjct: 109 MMAQLSNRKKGVTFGSFKVSKEIKYADKLPVIPWGPRLTKSSQNDMRINLAISAVFTAWI 168

Query: 61  AIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLAL 120
            +KR AEYKPLQFLAFAFVYR FEKLK+ E  V+P Y EEG+D G  LRMGKRLLR LAL
Sbjct: 169 LVKRSAEYKPLQFLAFAFVYRLFEKLKASESPVTPKYNEEGEDTGEGLRMGKRLLRSLAL 228

Query: 121 VFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR 174
           VFG +A+SSLAYT ILN+IE+AGGFIP  L+++QELI+T SSA++L+IMASYYR
Sbjct: 229 VFGCVAISSLAYTFILNIIEFAGGFIPTLLYNSQELIITTSSALMLYIMASYYR 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075548|gb|ACJ86134.1| unknown [Medicago truncatula]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 127/174 (72%), Positives = 146/174 (83%)

Query: 1   MMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWI 60
           MM QLS RKKGVTFGSFKVSK+IK+ADKQP+ PWGPRFAKSS  D+RINLAISA FTAWI
Sbjct: 112 MMAQLSNRKKGVTFGSFKVSKDIKYADKQPVIPWGPRFAKSSENDMRINLAISAVFTAWI 171

Query: 61  AIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLAL 120
           A+ + AEYKPLQFLAFAFVYR FEKLKSFE   S T  E+G+D G  LRMGKRLLR LAL
Sbjct: 172 AVTQSAEYKPLQFLAFAFVYRLFEKLKSFESPKSSTINEDGEDPGEGLRMGKRLLRSLAL 231

Query: 121 VFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR 174
           VFG IAVSSLAYT  LN++E A G+IP+ L+++QELI+T SSA +LFI+ S+YR
Sbjct: 232 VFGCIAVSSLAYTFALNIVESASGYIPSLLYNSQELIITASSAFMLFILGSFYR 285

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849170|ref|XP_002892466.1| heat shock protein binding protein [Arabidopsis lyrata subsp. lyrata] gi|297338308|gb|EFH68725.1| heat shock protein binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/174 (70%), Positives = 140/174 (80%)

Query: 1   MMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWI 60
           M  QL  RKKGVTFGSFKVSK+IK+ADKQPI PWGPRF++SS  D+ INLAIS  F+AWI
Sbjct: 121 MYAQLMNRKKGVTFGSFKVSKDIKYADKQPIIPWGPRFSRSSRNDMLINLAISVVFSAWI 180

Query: 61  AIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLAL 120
           AIKR  EYKPLQF++F FVYR FEKLKSFE   SP Y EEG++ GR LRMGKRLLR L+L
Sbjct: 181 AIKRNVEYKPLQFMSFVFVYRIFEKLKSFEAPSSPIYNEEGEESGRGLRMGKRLLRSLSL 240

Query: 121 VFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR 174
           VFG I V+SL YTG LN IEY G  IP  L++NQELIVT SSA +L+++ASYYR
Sbjct: 241 VFGSILVASLVYTGFLNGIEYMGKSIPMVLYNNQELIVTASSAFMLYVIASYYR 294

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390922|ref|NP_563823.1| Chloroplast J-like domain 1-containing protein [Arabidopsis thaliana] gi|13877839|gb|AAK43997.1|AF370182_1 unknown protein [Arabidopsis thaliana] gi|16323504|gb|AAL15246.1| unknown protein [Arabidopsis thaliana] gi|332190204|gb|AEE28325.1| Chloroplast J-like domain 1-containing protein [Arabidopsis thaliana]

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 121/174 (69%), Positives = 141/174 (81%)

Query: 1   MMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWI 60
           M  QL  RKKGVTFGSFKVSK+IK+ADKQPI PWGPRF++SS  D+ INLAIS  F+AWI
Sbjct: 121 MYAQLMNRKKGVTFGSFKVSKDIKYADKQPIIPWGPRFSRSSKNDMLINLAISVVFSAWI 180

Query: 61  AIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLAL 120
           AIKR  EYKPLQF++F FVYR FEKLKSFE   SP Y EEG++ GR LRMGKRLLR L+L
Sbjct: 181 AIKRNVEYKPLQFMSFVFVYRIFEKLKSFEAPSSPIYNEEGEESGRGLRMGKRLLRSLSL 240

Query: 121 VFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR 174
           VFG I ++SLAYTG LN IEY G  IP  L++NQELIVT SSA +L+++AS+YR
Sbjct: 241 VFGSILLASLAYTGFLNGIEYMGYSIPMVLYNNQELIVTASSAFMLYVIASFYR 294

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593057|gb|AAM65006.1| unknown [Arabidopsis thaliana]

 Score =  252 bits (644), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 121/174 (69%), Positives = 141/174 (81%)

Query: 1   MMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWI 60
           M  QL  RKKGVTFGSFKVSK+IK+ADKQPI PWGPRF++SS  D+ INLAIS  F+AWI
Sbjct: 121 MYAQLMNRKKGVTFGSFKVSKDIKYADKQPIIPWGPRFSRSSKNDMLINLAISVVFSAWI 180

Query: 61  AIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLAL 120
           AIKR  EYKPLQF++F FVYR FEKLKSFE   SP Y EEG++ GR LRMGKRLLR L+L
Sbjct: 181 AIKRNVEYKPLQFMSFVFVYRIFEKLKSFEAPSSPIYNEEGEESGRGLRMGKRLLRSLSL 240

Query: 121 VFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR 174
           VFG I ++SLAYTG LN IEY G  IP  L++NQELIVT SSA +L+++AS+YR
Sbjct: 241 VFGSILLASLAYTGFLNGIEYMGYSIPMVLYNNQELIVTASSAFMLYVIASFYR 294

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2025660	294	CJD1 "Chloroplast J-like domai	1.0	0.591	0.695	5.5e-61

TAIR|locus:2025660 CJD1 "Chloroplast J-like domain 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 121/174 (69%), Positives = 141/174 (81%)

Query:     1 MMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWI 60
             M  QL  RKKGVTFGSFKVSK+IK+ADKQPI PWGPRF++SS  D+ INLAIS  F+AWI
Sbjct:   121 MYAQLMNRKKGVTFGSFKVSKDIKYADKQPIIPWGPRFSRSSKNDMLINLAISVVFSAWI 180

Query:    61 AIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLAL 120
             AIKR  EYKPLQF++F FVYR FEKLKSFE   SP Y EEG++ GR LRMGKRLLR L+L
Sbjct:   181 AIKRNVEYKPLQFMSFVFVYRIFEKLKSFEAPSSPIYNEEGEESGRGLRMGKRLLRSLSL 240

Query:   121 VFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR 174
             VFG I ++SLAYTG LN IEY G  IP  L++NQELIVT SSA +L+++AS+YR
Sbjct:   241 VFGSILLASLAYTGFLNGIEYMGYSIPMVLYNNQELIVTASSAFMLYVIASFYR 294


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.140   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      174       174   0.00075  109 3  11 22  0.47    31
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  560 (60 KB)
  Total size of DFA:  133 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.30u 0.18s 15.48t   Elapsed:  00:00:00
  Total cpu time:  15.30u 0.18s 15.48t   Elapsed:  00:00:00
  Start:  Sat May 11 08:14:51 2013   End:  Sat May 11 08:14:51 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IMP

GO:0031969 "chloroplast membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	99.39

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=99.39  E-value=1.4e-12  Score=107.85  Aligned_cols=140  Identities=27%  Similarity=0.422  Sum_probs=102.0

Q ss_pred             ChhhhhhhhcCccccceeeehhhccccC-----------CCCccCCCC----CCCCCcchhhHhHHHHHHHHHHHHhhcc
Q 030628            1 MMEQLSKRKKGVTFGSFKVSKEIKFADK-----------QPIFPWGPR----FAKSSPQDIRINLAISAAFTAWIAIKRY   65 (174)
Q Consensus         1 MmaQLs~RkkG~t~Gs~~VsKdikYADk-----------qp~~PW~PR----~~~s~~kDi~IN~aIsa~~~~wi~~~~~   65 (174)
                      ||++|..|+||    .++|+++|||||+           ++..||.+|    +...+.+|+.+..++-+++.+|......
T Consensus        38 LM~rL~~Rq~G----ki~v~~~ir~ad~~~~~~~~~~~~~~~p~wl~~~~~~~~~P~~~~l~~~~~~f~~L~~~~~~~~~  113 (194)
T PF11833_consen   38 LMERLRQRQKG----KIKVPERIRYADREEPKPPNPKPSNPSPPWLQRLLPSFDTPSSQDLLIRAAAFGALGLWSLLFPA  113 (194)
T ss_pred             HHHHHHHHHcC----CCCccHHHHHhhhccccccCCCCCCccchHHHhcccceeCCCcchHHHHHHHHHHHHHHHHHHcC
Confidence            69999999999    6899999999999           777899999    5888899999999998999999998877


Q ss_pred             cccchHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHhhhHHhHH-HHHHHhCc
Q 030628           66 AEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGIL-NLIEYAGG  144 (174)
Q Consensus        66 a~~kPl~f~af~~v~r~f~KL~~~ePp~~~~~~e~ge~~gr~~r~~KR~lRsl~LvfG~~~v~sL~yT~~l-n~ie~~g~  144 (174)
                      ++...+|.+ ++. ...+..|++                     -++|+.|++++.+|++++ .+.....+ +.+..  .
T Consensus       114 ~~~~~l~La-l~~-~~~iyfl~~---------------------K~~~~~rA~~~~~~~L~~-G~~lGs~l~~~l~~--~  167 (194)
T PF11833_consen  114 ASGPGLQLA-LGL-GACIYFLNR---------------------KERKLGRAFLWTLGGLVV-GLILGSLLASWLPV--D  167 (194)
T ss_pred             CCCcchHHH-HHH-HHHHHHHHH---------------------hcchHHHHHHHHHHHHHH-HHHHHHHHHhhccc--c
Confidence            777777733 322 223333322                     178999999999999988 44444444 33322  1


Q ss_pred             ccchheeccceeeeehhhhHHHHhhhhc
Q 030628          145 FIPAFLFDNQELIVTGSSAVLLFIMASY  172 (174)
Q Consensus       145 ~iP~~~y~~Qel~vt~~~~v~L~~~~s~  172 (174)
                      .+|  .-.+=|.++|..+-++|....+|
T Consensus       168 ~~p--~~~s~~~~~sl~~~i~lwl~s~f  193 (194)
T PF11833_consen  168 IVP--GPWSPEQLVSLFTYILLWLVSLF  193 (194)
T ss_pred             cCC--CCCCHHHHHHHHHHHHHHHHHhc
Confidence            223  34455777777777777766555

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00