Citrus Sinensis ID: 030636

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR
Secondary Structure (PSIPRED)
cccccccHHcccccccccccccccEEEEEEEccEEEcccccccccccccccEEEEEcccccccccEEEEEEccccccccccccccEEEEEEEcccccccccccEEEEEcccccccccEEEEEEEEcccccccccccccccccccHHHHHHHHcccccEEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEccEEccccccccccEEEEEEEccEEEEcccEEccccEccccEEEEcccccccccEEEEEEEEcccccccccccccEEEEEEEEEccccccccEEEEEccccccccHEEEEEEEEEccccEEEEcccccccccccHHHHHHHcccccHHHHHHHHccHHHHHHHH
Coil and Loop (DISEMBL)
marsmeplVVGRVIGDvvdmftpatemtvhygtkqvangceikpsasadkpsvqihapppassnlytlvmvdpdapspsepryrEWLHWIVVDIPEGSDATKELVAymgpqpptgiHRYVFALFNqkgkvmagcrppdarsnfstrrfaadnglqppvaAVYFNSQKEVAVRKR
Flexible Loop (DISEMBL)
marsmeplvvGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVaavyfnsqkevavrkr
Low Complexity Region (SEG)
MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR
Disordered region (IsUnstruct)
*******LVVGRVIGDVVDMFTPATEMTVHYGTKQVANGC*************************YTLV*************YREWLHWIVVDIPEGSDATKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGC***********************VAAVYF***********
Disordered Region (DISOPRED)
*A*SMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKELVAYMGPQPPTGIHRYVFALFNQKGKVM********RSNFSTRRFAADNGLQPPVAAVYFNSQKEV*****
Disordered Region (DISEMBL)
MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPS*********IHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR
Disordered Region (DISPRO)
*****EPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVR**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
Q9XFK7	173	Protein MOTHER of FT and	yes	no	0.982	0.988	0.573	5e-52
P93003	177	Protein TERMINAL FLOWER 1	no	no	0.977	0.960	0.52	3e-45
Q9XH44	174	CEN-like protein 1 OS=Nic	N/A	no	0.971	0.971	0.511	9e-44
Q9FIT4	177	Protein BROTHER of FT and	no	no	0.982	0.966	0.508	1e-42
Q9XH43	175	CEN-like protein 2 OS=Nic	N/A	no	0.954	0.948	0.505	5e-42
Q9XH42	175	CEN-like protein 4 OS=Nic	N/A	no	0.954	0.948	0.494	3e-41
Q41261	181	Protein CENTRORADIALIS OS	N/A	no	0.971	0.933	0.5	4e-41
O82088	175	Protein SELF-PRUNING OS=S	N/A	no	0.982	0.977	0.5	5e-41
Q93WI9	179	Protein HEADING DATE 3A O	no	no	0.971	0.944	0.491	6e-41
Q9ZNV5	175	Protein CENTRORADIALIS-li	no	no	0.971	0.965	0.511	1e-39

>sp|Q9XFK7|MFT_ARATH Protein MOTHER of FT and TF 1 OS=Arabidopsis thaliana GN=MFT PE=1 SV=1

 Score =  203 bits (516), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 101/176 (57%), Positives = 123/176 (69%), Gaps = 5/176 (2%)

Query: 1   MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPP 60
           MA S++PLVVGRVIGDV+DMF P   M+V++G K + NGCEIKPS + + P V I     
Sbjct: 1   MAASVDPLVVGRVIGDVLDMFIPTANMSVYFGPKHITNGCEIKPSTAVNPPKVNISG--- 57

Query: 61  ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHR 118
            S  LYTLVM DPDAPSPSEP  REW+HWIVVDIP G++ +  KE++ YM P+PP GIHR
Sbjct: 58  HSDELYTLVMTDPDAPSPSEPNMREWVHWIVVDIPGGTNPSRGKEILPYMEPRPPVGIHR 117

Query: 119 YVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           Y+  LF Q   V    + P +R+NFSTR FA    L  PVA VYFN+QKE A R+R
Sbjct: 118 YILVLFRQNSPVGLMVQQPPSRANFSTRMFAGHFDLGLPVATVYFNAQKEPASRRR 173

May form complexes with phosphorylated ligands by interfering with kinases and their effectors.
Arabidopsis thaliana (taxid: 3702)

>sp|P93003|TFL1_ARATH Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana GN=TFL1 PE=1 SV=1

 Score =  181 bits (458), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 122/175 (69%), Gaps = 5/175 (2%)

Query: 2   ARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPA 61
            R +EPL++GRV+GDV+D FTP T+M V Y  KQV+NG E+ PS+ + KP V+IH     
Sbjct: 6   TRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLR 65

Query: 62  SSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHRY 119
           S   +TLVM+DPD P PS+P  +E LHWIV +IP  +DAT  KE+V+Y  P+P  GIHR+
Sbjct: 66  S--FFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRF 123

Query: 120 VFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           VF LF QK + +     P +R +F+TR+FA +  L  PVAAV+FN+Q+E A RKR
Sbjct: 124 VFVLFRQKQRRVIFPNIP-SRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 177

Controls inflorescence meristem identity and is required for maintenance of a indeterminate inflorescence. Prevents the expression of 'APETALA1' and 'LEAFY'. Also plays a role in the regulation of the time of flowering in the long-day flowering pathway. May form complexes with phosphorylated ligands by interfering with kinases and their effectors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XH44|CET1_TOBAC CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE=2 SV=1

 Score =  176 bits (445), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 90/176 (51%), Positives = 120/176 (68%), Gaps = 7/176 (3%)

Query: 2   ARSMEPLVVGRVIGDVVDMFTPATEMTVHY-GTKQVANGCEIKPSASADKPSVQIHAPPP 60
           +R +EPLVV RVIG+VVD F P+ ++ V Y G+KQV NG E+ P+  A KP V+I     
Sbjct: 3   SRVVEPLVVARVIGEVVDSFNPSVKLNVIYNGSKQVFNGHELMPAVIAAKPRVEIGGEDM 62

Query: 61  ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHR 118
            S+  YTL+M DPD P PS+P  RE LHWIV DIP  +D++  +E+V+Y  P+P  GIHR
Sbjct: 63  RSA--YTLIMTDPDVPGPSDPYLREHLHWIVTDIPGSTDSSFGREIVSYESPKPVIGIHR 120

Query: 119 YVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           YV  L+ Q G+     +P   R +F+TRR+ A+NGL  PVAAVYFN+Q+E A R+R
Sbjct: 121 YVLLLYKQSGR--QTVKPAATRDHFNTRRYTAENGLGSPVAAVYFNAQRETAARRR 174

May form complexes with phosphorylated ligands by interfering with kinases and their effectors.

Nicotiana tabacum (taxid: 4097)

>sp|Q9FIT4|BFT_ARATH Protein BROTHER of FT and TFL 1 OS=Arabidopsis thaliana GN=BFT PE=3 SV=1

 Score =  172 bits (435), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 120/177 (67%), Gaps = 6/177 (3%)

Query: 1   MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQ-VANGCEIKPSASADKPSVQIHAPP 59
           M+R +EPL+VGRVIGDV++MF P+  M V + +   V+NG E+ PS    KP V+I    
Sbjct: 1   MSREIEPLIVGRVIGDVLEMFNPSVTMRVTFNSNTIVSNGHELAPSLLLSKPRVEIGGQD 60

Query: 60  PASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIH 117
             S   +TL+M+DPDAPSPS P  RE+LHW+V DIP  +DA+  +E+V Y  P+P  GIH
Sbjct: 61  LRS--FFTLIMMDPDAPSPSNPYMREYLHWMVTDIPGTTDASFGREIVRYETPKPVAGIH 118

Query: 118 RYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           RYVFALF Q+G+  A    P+ R  F+T  F++  GL  PVAAVYFN+Q+E A R+R
Sbjct: 119 RYVFALFKQRGR-QAVKAAPETRECFNTNAFSSYFGLSQPVAAVYFNAQRETAPRRR 174

May form complexes with phosphorylated ligands by interfering with kinases and their effectors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XH43|CET2_TOBAC CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE=2 SV=1

 Score =  170 bits (430), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 87/172 (50%), Positives = 115/172 (66%), Gaps = 6/172 (3%)

Query: 6   EPLVVGRVIGDVVDMFTPATEMTVHYGT-KQVANGCEIKPSASADKPSVQIHAPPPASSN 64
           +PLV+GRVIG+VVD FTP+ +M+V Y + K V NG E+ PS+   KP V++H     S  
Sbjct: 7   DPLVIGRVIGEVVDYFTPSVKMSVTYNSSKHVYNGHELFPSSVTSKPRVEVHGGDLRS-- 64

Query: 65  LYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHRYVFA 122
            +T++M+DPD P PS+P  RE LHWIV DIP  +D +  KE+V Y  P+P  GIHR+VF 
Sbjct: 65  FFTMIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGKEIVGYEMPRPNIGIHRFVFL 124

Query: 123 LFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           LF QK K       P +R  F+TR+FA +N L  PVAAV+FN Q+E A R+R
Sbjct: 125 LFKQK-KRQTVLTAPLSRDRFNTRKFAEENELGSPVAAVFFNCQRETAARRR 175

May form complexes with phosphorylated ligands by interfering with kinases and their effectors.

Nicotiana tabacum (taxid: 4097)

>sp|Q9XH42|CET4_TOBAC CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE=2 SV=1

 Score =  167 bits (423), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 85/172 (49%), Positives = 114/172 (66%), Gaps = 6/172 (3%)

Query: 6   EPLVVGRVIGDVVDMFTPATEMTVHYGT-KQVANGCEIKPSASADKPSVQIHAPPPASSN 64
           +PLV+GRVIG+VVD FTP+ +M+V Y + K V NG E+ PS+   KP V++H     S  
Sbjct: 7   DPLVIGRVIGEVVDYFTPSVKMSVTYNSSKHVYNGHELFPSSVTSKPRVEVHGGDLRS-- 64

Query: 65  LYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHRYVFA 122
            +TL+M+DPD P PS+P  RE LHWIV DIP  +D +  +E+V Y  P+P  GIHR+VF 
Sbjct: 65  FFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGREIVGYEMPRPNIGIHRFVFL 124

Query: 123 LFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           LF QK K       P +R  F+TR+F+ +N L  PVAA +FN Q+E A R+R
Sbjct: 125 LFKQK-KRQTLLSAPLSRDRFNTRKFSEENELGSPVAAAFFNCQRETAARRR 175

May form complexes with phosphorylated ligands by interfering with kinases and their effectors.

Nicotiana tabacum (taxid: 4097)

>sp|Q41261|CEN_ANTMA Protein CENTRORADIALIS OS=Antirrhinum majus GN=CEN PE=1 SV=1

 Score =  167 bits (423), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 89/178 (50%), Positives = 114/178 (64%), Gaps = 9/178 (5%)

Query: 4   SMEPLVVGRVIGDVVDMFTPATEMTVHYGT----KQVANGCEIKPSASADKPSVQIHAPP 59
           S +PLV+GRVIGDVVD FT   +M+V Y +    K V NG E+ PSA    P V++H   
Sbjct: 6   SSDPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGD 65

Query: 60  PASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIH 117
             S   +TL+M DPD P PS+P  RE LHWIV DIP  +D++  KE+V+Y  P+P  GIH
Sbjct: 66  MRS--FFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIH 123

Query: 118 RYVFALFNQKGKVMAGCRPP-DARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           R+VF LF QK +  A   PP   R  F+TR+F  +N L  PVAAV+FN Q+E A R+R
Sbjct: 124 RFVFLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRETAARRR 181

Expression of CEN leads to a morphological switch between shoot growth and the development of flower structures (inflorescence). May form complexes with phosphorylated ligands by interfering with kinases and their effectors.

Antirrhinum majus (taxid: 4151)

>sp|O82088|SELFP_SOLLC Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP PE=2 SV=1

 Score =  166 bits (421), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 89/178 (50%), Positives = 115/178 (64%), Gaps = 7/178 (3%)

Query: 1   MARSM-EPLVVGRVIGDVVDMFTPATEMTVHYGT-KQVANGCEIKPSASADKPSVQIHAP 58
           MA  M EPLV+GRVIG+VVD F P+ +M+V Y   K V NG E  PS+   KP V++H  
Sbjct: 1   MASKMCEPLVIGRVIGEVVDYFCPSVKMSVVYNNNKHVYNGHEFFPSSVTSKPRVEVHGG 60

Query: 59  PPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGI 116
              S   +TL+M+DPD P PS+P  RE LHWIV DIP  +D +  +E+V Y  P+P  GI
Sbjct: 61  DLRS--FFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSFGREVVGYEMPRPNIGI 118

Query: 117 HRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           HR+VF LF QK K       P +R  FS+R+F+ +N L  PVAAV+FN Q+E A R+R
Sbjct: 119 HRFVFLLFKQK-KRQTISSAPVSRDQFSSRKFSEENELGSPVAAVFFNCQRETAARRR 175

Not known. In plants homozygous for the recessive allele of the SP gene, sympodial segments develop progressively fewer nodes until the shoot is terminated by two consecutive. inflorescences.

Solanum lycopersicum (taxid: 4081)

>sp|Q93WI9|HD3A_ORYSJ Protein HEADING DATE 3A OS=Oryza sativa subsp. japonica GN=HD3A PE=1 SV=1

 Score =  166 bits (420), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 111/175 (63%), Gaps = 6/175 (3%)

Query: 2   ARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPA 61
            R  +PLVVGRV+GDV+D F  +T + V YG+K V+NGCE+KPS    +P V++      
Sbjct: 5   GRDRDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGCELKPSMVTHQPRVEVGGNDMR 64

Query: 62  SSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHRY 119
           +   YTLVMVDPDAPSPS+P  RE+LHW+V DIP  + A+  +E++ Y  P+P  GIHR 
Sbjct: 65  T--FYTLVMVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMCYESPRPTMGIHRL 122

Query: 120 VFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           VF LF Q G+       P  R NF+T+ FA    L  PVAAVYFN Q+E     R
Sbjct: 123 VFVLFQQLGRQTV--YAPGWRQNFNTKDFAELYNLGSPVAAVYFNCQREAGSGGR 175

Probable mobile flower-promoting signal (florigen) that moves from the leaf to the shoot apical meristem (SAM) and induces flowering. Promotes the transition from vegetative growth to flowering downstream of HD1 and EHD1 under short day (SD) conditions. Acts upstream of MADS14 and MADS15.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZNV5|CEN_ARATH Protein CENTRORADIALIS-like OS=Arabidopsis thaliana GN=CEN PE=2 SV=1

 Score =  162 bits (410), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 92/180 (51%), Positives = 116/180 (64%), Gaps = 11/180 (6%)

Query: 1   MAR-SMEPLVVGRVIGDVVDMFTPATEMTVHYGT-KQVANGCEIKPSASADKPSVQIHAP 58
           MAR S +PL+VGRVIGDVVD    A +MTV Y + KQV NG E+ PS    KP V++H  
Sbjct: 1   MARISSDPLMVGRVIGDVVDNCLQAVKMTVTYNSDKQVYNGHELFPSVVTYKPKVEVHGG 60

Query: 59  PPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGI 116
              S   +TLVM DPD P PS+P  RE LHWIV DIP  +D +  KE++ Y  P+P  GI
Sbjct: 61  DMRS--FFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDVSFGKEIIGYEMPRPNIGI 118

Query: 117 HRYVFALFNQ--KGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           HR+V+ LF Q  +G V++    P  R  F+TR FA +N L  PVAAV+FN Q+E A R+R
Sbjct: 119 HRFVYLLFKQTRRGSVVS---VPSYRDQFNTREFAHENDLGLPVAAVFFNCQRETAARRR 175

May form complexes with phosphorylated ligands by interfering with kinases and their effectors (By similarity). Can substitute for TERMINAL FLOWER 1 (in vitro).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
359495704	175	PREDICTED: protein MOTHER of FT and TF 1	0.994	0.988	0.732	2e-67
115503910	175	MFT-like protein [Vitis vinifera]	0.994	0.988	0.732	5e-67
449457686	174	PREDICTED: protein MOTHER of FT and TF 1	0.988	0.988	0.687	6e-63
28200388	178	SP2G [Solanum lycopersicum]	0.965	0.943	0.645	3e-57
255567437	161	phosphatidylethanolamine-binding protein	0.925	1.0	0.643	9e-57
116783034	174	unknown [Picea sitchensis] gi|224284891|	0.988	0.988	0.625	2e-56
335885138	174	MFT1-like protein [Picea abies]	0.988	0.988	0.613	3e-55
302817100	174	TF1-like protein [Selaginella moellendor	0.982	0.982	0.613	5e-55
335885160	175	MFT2-like protein [Picea abies]	0.994	0.988	0.619	2e-54
224133196	173	predicted protein [Populus trichocarpa]	0.982	0.988	0.602	1e-53

>gi|359495704|ref|XP_003635066.1| PREDICTED: protein MOTHER of FT and TF 1 [Vitis vinifera] gi|297745652|emb|CBI40863.3| unnamed protein product [Vitis vinifera]

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 129/176 (73%), Positives = 142/176 (80%), Gaps = 3/176 (1%)

Query: 1   MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPP 60
           MA S+E LVVG+VIGDVV+MFTPA E TVH+G++QVANG  I PSA+ DKP VQIH    
Sbjct: 1   MAGSLESLVVGKVIGDVVNMFTPAAEFTVHFGSRQVANGRMIPPSAAVDKPKVQIHGHR- 59

Query: 61  ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHR 118
            SSNLYTLVMVDPDAPSPSEP +REWLHWIVVDIPEG DAT  +E+V YMGPQPPTGIHR
Sbjct: 60  LSSNLYTLVMVDPDAPSPSEPTFREWLHWIVVDIPEGCDATQGREVVPYMGPQPPTGIHR 119

Query: 119 YVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           Y+F LF QK   M+G  PPD RSNFSTR+FAA NGL PPVA VYFNSQKE   RK 
Sbjct: 120 YIFTLFKQKAAAMSGTLPPDTRSNFSTRQFAAGNGLGPPVALVYFNSQKERTNRKH 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115503910|gb|ABI99469.1| MFT-like protein [Vitis vinifera]

 Score =  258 bits (660), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 129/176 (73%), Positives = 141/176 (80%), Gaps = 3/176 (1%)

Query: 1   MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPP 60
           MA S+E LVVG+VIGDVV+MFTPA E TVHYG++QVANG  I PSA+ DKP VQIH    
Sbjct: 1   MAGSLESLVVGKVIGDVVNMFTPAAEFTVHYGSRQVANGRMIPPSAAVDKPKVQIHGHR- 59

Query: 61  ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHR 118
            SSNLYTLVMVDPDAPSPSEP  REWLHWIVVDIPEG DAT  +E+V YMGPQPPTGIHR
Sbjct: 60  LSSNLYTLVMVDPDAPSPSEPTLREWLHWIVVDIPEGCDATQGREVVPYMGPQPPTGIHR 119

Query: 119 YVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           Y+F LF QK   M+G  PP+ RSNFSTR+FAA NGL PPVA VYFNSQKE   RK 
Sbjct: 120 YIFTLFKQKAAAMSGTLPPETRSNFSTRQFAAGNGLGPPVALVYFNSQKERTNRKH 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457686|ref|XP_004146579.1| PREDICTED: protein MOTHER of FT and TF 1-like [Cucumis sativus] gi|449488407|ref|XP_004158023.1| PREDICTED: protein MOTHER of FT and TF 1-like [Cucumis sativus]

 Score =  245 bits (625), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 121/176 (68%), Positives = 141/176 (80%), Gaps = 4/176 (2%)

Query: 1   MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPP 60
           M RS++ LVVGRVIGDV+DMFTPA +++V YG+K VANG EIKP  +AD+P+V I AP  
Sbjct: 1   MVRSVDSLVVGRVIGDVLDMFTPAADVSVSYGSKHVANGGEIKPFVAADRPTVLIQAP-- 58

Query: 61  ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATK--ELVAYMGPQPPTGIHR 118
            S+ LYTLVMVDPDAPSPSEP +REWLHWIVVDIPEG+DA K  E+V YMGPQPPTGIHR
Sbjct: 59  VSNQLYTLVMVDPDAPSPSEPTFREWLHWIVVDIPEGADANKGKEVVHYMGPQPPTGIHR 118

Query: 119 YVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           YVFA+F Q   +    RPP  RSNF TR+FA+ NGL  PVAAVYFNSQK+ A +KR
Sbjct: 119 YVFAVFKQNTPLGGRLRPPTTRSNFKTRQFASQNGLGLPVAAVYFNSQKQPASKKR 174

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28200388|gb|AAO31791.1| SP2G [Solanum lycopersicum]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 111/172 (64%), Positives = 131/172 (76%), Gaps = 4/172 (2%)

Query: 2   ARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVAN-GCEIKPSASADKPSVQIHAPPP 60
           ARS++PLVVG+VIGDV+DMF P  + TV Y +KQ++N G EIKP+ +A KP V I     
Sbjct: 5   ARSVDPLVVGKVIGDVLDMFVPVVDFTVEYASKQISNNGVEIKPAEAAQKPRVHIKGSL- 63

Query: 61  ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHR 118
            S+NLYTLVM DPDAPSPSEP +REWLHWIV DIPEG DA+  +E+V YMGP+PP GIHR
Sbjct: 64  HSNNLYTLVMADPDAPSPSEPTFREWLHWIVTDIPEGGDASQGREMVEYMGPKPPAGIHR 123

Query: 119 YVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVA 170
           YVF LF QK       +PP  RSNF TR+FA+DNGL  PVAA+YFNSQKE A
Sbjct: 124 YVFTLFRQKEAEQVPHKPPQGRSNFKTRQFASDNGLDLPVAALYFNSQKEHA 175

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567437|ref|XP_002524698.1| phosphatidylethanolamine-binding protein, putative [Ricinus communis] gi|223536059|gb|EEF37717.1| phosphatidylethanolamine-binding protein, putative [Ricinus communis]

 Score =  224 bits (572), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 129/174 (74%), Gaps = 13/174 (7%)

Query: 1   MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPP 60
           MARS+EPLVVG+VIG+V+DM+ P  E TVHYG+KQ+ANGCEIKPSA+   P  QI     
Sbjct: 1   MARSLEPLVVGKVIGEVLDMYNPVAEFTVHYGSKQIANGCEIKPSAAVQMPRAQILGSRL 60

Query: 61  ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKELVAYMGPQPPTGIHRYV 120
             S LYTLVMVDPDAPSPS+P++REWLHWI VDIPEGSDATK            GIHRYV
Sbjct: 61  TPS-LYTLVMVDPDAPSPSDPKWREWLHWIAVDIPEGSDATK------------GIHRYV 107

Query: 121 FALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           FA+F Q   +    + P+ R NFSTR+FAA NGL  PVAAVYFNSQKE AV+KR
Sbjct: 108 FAVFKQGEALNGRTKAPEGRGNFSTRQFAAQNGLGLPVAAVYFNSQKEPAVKKR 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116783034|gb|ABK22769.1| unknown [Picea sitchensis] gi|224284891|gb|ACN40175.1| unknown [Picea sitchensis]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/176 (62%), Positives = 132/176 (75%), Gaps = 4/176 (2%)

Query: 1   MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPP 60
           MARS +PLVVGRVIGDV+DMF P+ +M V+YG+KQV NGCEIKPSA+ D+P VQI A   
Sbjct: 1   MARSTDPLVVGRVIGDVIDMFVPSNDMAVYYGSKQVTNGCEIKPSATVDRPKVQI-AGRH 59

Query: 61  ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHR 118
              +LYTLVM DPDAPSPSEP  REW+HW+V DIP  +DA   +E++ YMGP+PP GIHR
Sbjct: 60  FDDSLYTLVMTDPDAPSPSEPNMREWVHWVVTDIPGATDAAQGREILPYMGPRPPIGIHR 119

Query: 119 YVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           Y+F LF Q G  M    PP AR+NFSTR FA++  L  PV+A YFN+QKE   RKR
Sbjct: 120 YIFVLFKQSGP-MVMMMPPQARNNFSTRAFASEYSLGLPVSAAYFNAQKEPGTRKR 174

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|335885138|gb|AEH59565.1| MFT1-like protein [Picea abies]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 108/176 (61%), Positives = 132/176 (75%), Gaps = 4/176 (2%)

Query: 1   MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPP 60
           MARS +PLVVGRVIGDV+DMF P+ +M V+YG+KQV +GCEIKPSA+ D+P VQI A   
Sbjct: 1   MARSTDPLVVGRVIGDVIDMFVPSNDMAVYYGSKQVRDGCEIKPSATVDRPKVQI-AGRH 59

Query: 61  ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHR 118
              +LYTLVM DPD+PSPSEP  REW+HW+V DIP  +DA   +E++ YMGP+PP GIHR
Sbjct: 60  FDDSLYTLVMTDPDSPSPSEPNMREWVHWVVTDIPGATDAAQGREILPYMGPRPPIGIHR 119

Query: 119 YVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           Y+F LF Q G  M    PP AR+NFSTR FA++  L  PV+A YFN+QKE   RKR
Sbjct: 120 YIFVLFKQSGP-MVMMVPPQARNNFSTRAFASEYSLGLPVSAAYFNAQKEPGTRKR 174

Source: Picea abies

Species: Picea abies

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302817100|ref|XP_002990227.1| TF1-like protein [Selaginella moellendorffii] gi|302821593|ref|XP_002992458.1| hypothetical protein SELMODRAFT_229690 [Selaginella moellendorffii] gi|300139660|gb|EFJ06396.1| hypothetical protein SELMODRAFT_229690 [Selaginella moellendorffii] gi|300142082|gb|EFJ08787.1| TF1-like protein [Selaginella moellendorffii]

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 108/176 (61%), Positives = 136/176 (77%), Gaps = 5/176 (2%)

Query: 1   MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPP 60
           M RSM+PLV+GRVIGDV+DMF PA +M+V YG+KQV NGCE+KPSA+  +P VQ+ +P  
Sbjct: 1   MGRSMDPLVLGRVIGDVLDMFVPAVDMSVCYGSKQVNNGCELKPSATQARPIVQVGSPHE 60

Query: 61  ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHR 118
             + LYTLVMVDPDAPSPSEP  REW+HWIV DIP G+DA+  +E++ Y+GP+PPTGIHR
Sbjct: 61  EGA-LYTLVMVDPDAPSPSEPSMREWVHWIVADIPGGADASQGREILQYIGPKPPTGIHR 119

Query: 119 YVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           Y+F +F Q G V+    PP  R+NFSTR FA +  L  PV AVY+N+QKE A R+R
Sbjct: 120 YIFVVFRQMGPVL--MLPPLMRNNFSTRWFAQEYFLGLPVGAVYYNAQKEPASRRR 173

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|335885160|gb|AEH59566.1| MFT2-like protein [Picea abies]

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/176 (61%), Positives = 129/176 (73%), Gaps = 3/176 (1%)

Query: 1   MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPP 60
           MARS++PLVVG V+GDV+D+F  A +MTVHYG KQV NGCEIKPSA+  +P++QI     
Sbjct: 1   MARSVDPLVVGNVVGDVIDIFVRAADMTVHYGPKQVTNGCEIKPSATVHRPNLQIAGRHF 60

Query: 61  ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHR 118
             + L+TLVM DPDAPSPSEP  REWLHWIV DIP  +DA+  +E+V YMGP+PP GIHR
Sbjct: 61  DDNKLFTLVMTDPDAPSPSEPNMREWLHWIVTDIPGAADASQGREIVPYMGPRPPIGIHR 120

Query: 119 YVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           YVF  F Q+   M     P  R NFSTR FAA  GL  PVAAVYFN+QKE A +KR
Sbjct: 121 YVFVAFRQQDP-MVMMMAPQVRHNFSTRAFAAQYGLGLPVAAVYFNAQKEPANKKR 175

Source: Picea abies

Species: Picea abies

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133196|ref|XP_002321507.1| predicted protein [Populus trichocarpa] gi|48474193|dbj|BAD22677.1| flowering locus T like protein [Populus nigra] gi|83628280|gb|ABC26020.1| MFT-like protein [Populus trichocarpa] gi|169990898|dbj|BAG12898.1| FLOWERING LOCUS T/ TERMINAL FLOWER 1-like protein [Populus nigra] gi|222868503|gb|EEF05634.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/176 (60%), Positives = 131/176 (74%), Gaps = 5/176 (2%)

Query: 1   MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPP 60
           MA S++PLVVGRVIGDVVDMF PA +M+V+YG+K V+NGC+IKPS S D P V I     
Sbjct: 1   MAASVDPLVVGRVIGDVVDMFVPAVKMSVYYGSKHVSNGCDIKPSLSVDPPKVTISG--- 57

Query: 61  ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHR 118
            S  LYTLVM DPDAPSPSEPR REW+HWIV DIP G++ T  KE+++Y+GP+PP GIHR
Sbjct: 58  HSDELYTLVMTDPDAPSPSEPRMREWVHWIVADIPGGTNPTRGKEILSYVGPRPPVGIHR 117

Query: 119 YVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           Y+  LF QK  + +   PP  RS+F+TR +AA   L  PVA VYFN+QKE A ++R
Sbjct: 118 YILVLFQQKMPLGSMVEPPQNRSHFNTRLYAAHLDLGLPVATVYFNAQKEPANKRR 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2194100	173	E12A11 [Arabidopsis thaliana (	0.982	0.988	0.573	1.5e-49
UNIPROTKB|Q6ESF8	173	P0605D08.14 "Os02g0531600 prot	0.977	0.982	0.525	1.5e-42
TAIR|locus:2150595	177	TFL1 "TERMINAL FLOWER 1" [Arab	0.971	0.954	0.522	2.5e-42
UNIPROTKB|Q9XGS4	173	Fdr1 "Cen-like protein FDR1" [	0.977	0.982	0.519	8.4e-42
UNIPROTKB|Q9XGS5	173	Fdr2 "Cen-like protein FDR2" [	0.977	0.982	0.514	7.5e-41
TAIR|locus:2174058	177	BFT "brother of FT and TFL1" [	0.982	0.966	0.508	7.5e-41
UNIPROTKB|Q93WI9	179	HD3A "Protein HEADING DATE 3A"	0.931	0.905	0.505	1.3e-38
UNIPROTKB|Q93WM7	179	Hd3a "Hd3a protein" [Oryza sat	0.931	0.905	0.505	1.3e-38
TAIR|locus:2038643	175	ATC "centroradialis" [Arabidop	0.971	0.965	0.511	2.1e-38
UNIPROTKB|Q8VWH2	178	HD3B "Protein HEADING DATE 3B"	0.913	0.893	0.509	7e-38

TAIR|locus:2194100 E12A11 [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 101/176 (57%), Positives = 123/176 (69%)

Query:     1 MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPP 60
             MA S++PLVVGRVIGDV+DMF P   M+V++G K + NGCEIKPS + + P V I     
Sbjct:     1 MAASVDPLVVGRVIGDVLDMFIPTANMSVYFGPKHITNGCEIKPSTAVNPPKVNISGH-- 58

Query:    61 ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHR 118
              S  LYTLVM DPDAPSPSEP  REW+HWIVVDIP G++ +  KE++ YM P+PP GIHR
Sbjct:    59 -SDELYTLVMTDPDAPSPSEPNMREWVHWIVVDIPGGTNPSRGKEILPYMEPRPPVGIHR 117

Query:   119 YVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
             Y+  LF Q   V    + P +R+NFSTR FA    L  PVA VYFN+QKE A R+R
Sbjct:   118 YILVLFRQNSPVGLMVQQPPSRANFSTRMFAGHFDLGLPVATVYFNAQKEPASRRR 173

GO:0005737 "cytoplasm" evidence=ISM

GO:0008429 "phosphatidylethanolamine binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010030 "positive regulation of seed germination" evidence=IMP

GO:0046685 "response to arsenic-containing substance" evidence=RCA

UNIPROTKB|Q6ESF8 P0605D08.14 "Os02g0531600 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 93/177 (52%), Positives = 118/177 (66%)

Query:     1 MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGT-KQVANGCEIKPSASADKPSVQIHAPP 59
             M+R +EPL+VG+VIG+V+D F P  +MT  YG  KQV NG E  PSA A KP V++    
Sbjct:     1 MSRVLEPLIVGKVIGEVLDNFNPTVKMTATYGANKQVFNGHEFFPSAVAGKPRVEVQGGD 60

Query:    60 PASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIH 117
               S   +TLVM DPD P PS+P  RE LHWIV DIP  +DA+  +E+V+Y  P+P  GIH
Sbjct:    61 LRS--FFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDASFGREVVSYESPRPNIGIH 118

Query:   118 RYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
             R++  LF QK +      PP +R  FSTR+FA DN L  PVAAVYFN+Q+E A R+R
Sbjct:   119 RFILVLFRQKRRQAVS--PPPSRDRFSTRQFAEDNDLGLPVAAVYFNAQRETAARRR 173

GO:0008429 "phosphatidylethanolamine binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2150595 TFL1 "TERMINAL FLOWER 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 91/174 (52%), Positives = 122/174 (70%)

Query:     3 RSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPAS 62
             R +EPL++GRV+GDV+D FTP T+M V Y  KQV+NG E+ PS+ + KP V+IH     S
Sbjct:     7 RVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRS 66

Query:    63 SNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHRYV 120
                +TLVM+DPD P PS+P  +E LHWIV +IP  +DAT  KE+V+Y  P+P  GIHR+V
Sbjct:    67 --FFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFV 124

Query:   121 FALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
             F LF QK + +     P +R +F+TR+FA +  L  PVAAV+FN+Q+E A RKR
Sbjct:   125 FVLFRQKQRRVIFPNIP-SRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 177

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0008429 "phosphatidylethanolamine binding" evidence=ISS

GO:0009744 "response to sucrose stimulus" evidence=IMP

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=IMP

GO:0031982 "vesicle" evidence=IDA

GO:0090344 "negative regulation of cell aging" evidence=IMP

GO:0003712 "transcription cofactor activity" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

UNIPROTKB|Q9XGS4 Fdr1 "Cen-like protein FDR1" [Oryza sativa (taxid:4530)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 92/177 (51%), Positives = 119/177 (67%)

Query:     1 MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGT-KQVANGCEIKPSASADKPSVQIHAPP 59
             M+RS+EPLVVGRVIG+V+D F P T+M V Y + K V NG E  PSA   KP V++    
Sbjct:     1 MSRSVEPLVVGRVIGEVIDSFNPCTKMIVTYNSNKLVFNGHEFYPSAVVSKPRVEVQGGD 60

Query:    60 PASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIH 117
               S   +TLVM DPD P PS+P  RE LHWIV DIP  +DA+  +E+++Y  P+P  GIH
Sbjct:    61 MRS--FFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDASFGREIISYESPKPSIGIH 118

Query:   118 RYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
             R+VF LF QK +       P +R +F+TR+FA +N L  PVAAVYFN+Q+E A R+R
Sbjct:   119 RFVFVLFKQKRRQAVVV--PSSRDHFNTRQFAEENELGLPVAAVYFNAQRETAARRR 173

GO:0008429 "phosphatidylethanolamine binding" evidence=ISS

UNIPROTKB|Q9XGS5 Fdr2 "Cen-like protein FDR2" [Oryza sativa (taxid:4530)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 91/177 (51%), Positives = 118/177 (66%)

Query:     1 MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGT-KQVANGCEIKPSASADKPSVQIHAPP 59
             M+RS+EPLVVGRVIG+V+D F P  +M V Y + K V NG E+ PSA   KP V++    
Sbjct:     1 MSRSVEPLVVGRVIGEVLDTFNPCMKMIVTYNSNKLVFNGHELYPSAVVSKPRVEVQGGD 60

Query:    60 PASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIH 117
               S   +TLVM DPD P PS+P  RE LHWIV DIP  +DA+  +E+++Y  P+P  GIH
Sbjct:    61 LRS--FFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDASFGREVISYESPKPNIGIH 118

Query:   118 RYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
             R++F LF QK +       P  R +F+TRRFA +N L  PVAAVYFN+Q+E A R+R
Sbjct:   119 RFIFVLFKQKRRQTVIV--PSFRDHFNTRRFAEENDLGLPVAAVYFNAQRETAARRR 173

GO:0008429 "phosphatidylethanolamine binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IGI

TAIR|locus:2174058 BFT "brother of FT and TFL1" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 90/177 (50%), Positives = 120/177 (67%)

Query:     1 MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQ-VANGCEIKPSASADKPSVQIHAPP 59
             M+R +EPL+VGRVIGDV++MF P+  M V + +   V+NG E+ PS    KP V+I    
Sbjct:     1 MSREIEPLIVGRVIGDVLEMFNPSVTMRVTFNSNTIVSNGHELAPSLLLSKPRVEIGGQD 60

Query:    60 PASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIH 117
               S   +TL+M+DPDAPSPS P  RE+LHW+V DIP  +DA+  +E+V Y  P+P  GIH
Sbjct:    61 LRS--FFTLIMMDPDAPSPSNPYMREYLHWMVTDIPGTTDASFGREIVRYETPKPVAGIH 118

Query:   118 RYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
             RYVFALF Q+G+  A    P+ R  F+T  F++  GL  PVAAVYFN+Q+E A R+R
Sbjct:   119 RYVFALFKQRGR-QAVKAAPETRECFNTNAFSSYFGLSQPVAAVYFNAQRETAPRRR 174

GO:0005737 "cytoplasm" evidence=ISM

GO:0008429 "phosphatidylethanolamine binding" evidence=ISS

GO:0009908 "flower development" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

UNIPROTKB|Q93WI9 HD3A "Protein HEADING DATE 3A" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 85/168 (50%), Positives = 110/168 (65%)

Query:     3 RSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPAS 62
             R  +PLVVGRV+GDV+D F  +T + V YG+K V+NGCE+KPS    +P V++      +
Sbjct:     6 RDRDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGCELKPSMVTHQPRVEVGGNDMRT 65

Query:    63 SNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHRYV 120
                YTLVMVDPDAPSPS+P  RE+LHW+V DIP  + A+  +E++ Y  P+P  GIHR V
Sbjct:    66 --FYTLVMVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMCYESPRPTMGIHRLV 123

Query:   121 FALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKE 168
             F LF Q G+       P  R NF+T+ FA    L  PVAAVYFN Q+E
Sbjct:   124 FVLFQQLGRQTVYA--PGWRQNFNTKDFAELYNLGSPVAAVYFNCQRE 169

GO:0008429 "phosphatidylethanolamine binding" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048572 "short-day photoperiodism" evidence=IMP

GO:0048575 "short-day photoperiodism, flowering" evidence=IMP

UNIPROTKB|Q93WM7 Hd3a "Hd3a protein" [Oryza sativa Indica Group (taxid:39946)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 85/168 (50%), Positives = 110/168 (65%)

Query:     3 RSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPAS 62
             R  +PLVVGRV+GDV+D F  +T + V YG+K V+NGCE+KPS    +P V++      +
Sbjct:     6 RDRDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGCELKPSMVTHQPRVEVGGNDMRT 65

Query:    63 SNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHRYV 120
                YTLVMVDPDAPSPS+P  RE+LHW+V DIP  + A+  +E++ Y  P+P  GIHR V
Sbjct:    66 --FYTLVMVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMCYESPRPTMGIHRLV 123

Query:   121 FALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKE 168
             F LF Q G+       P  R NF+T+ FA    L  PVAAVYFN Q+E
Sbjct:   124 FVLFQQLGRQTVYA--PGWRQNFNTKDFAELYNLGSPVAAVYFNCQRE 169

GO:0008429 "phosphatidylethanolamine binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048572 "short-day photoperiodism" evidence=IMP

TAIR|locus:2038643 ATC "centroradialis" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 92/180 (51%), Positives = 116/180 (64%)

Query:     1 MAR-SMEPLVVGRVIGDVVDMFTPATEMTVHYGT-KQVANGCEIKPSASADKPSVQIHAP 58
             MAR S +PL+VGRVIGDVVD    A +MTV Y + KQV NG E+ PS    KP V++H  
Sbjct:     1 MARISSDPLMVGRVIGDVVDNCLQAVKMTVTYNSDKQVYNGHELFPSVVTYKPKVEVHGG 60

Query:    59 PPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGI 116
                S   +TLVM DPD P PS+P  RE LHWIV DIP  +D +  KE++ Y  P+P  GI
Sbjct:    61 DMRS--FFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDVSFGKEIIGYEMPRPNIGI 118

Query:   117 HRYVFALFNQ--KGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
             HR+V+ LF Q  +G V++    P  R  F+TR FA +N L  PVAAV+FN Q+E A R+R
Sbjct:   119 HRFVYLLFKQTRRGSVVS---VPSYRDQFNTREFAHENDLGLPVAAVFFNCQRETAARRR 175

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0008429 "phosphatidylethanolamine binding" evidence=ISS

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0005634 "nucleus" evidence=IDA

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

UNIPROTKB|Q8VWH2 HD3B "Protein HEADING DATE 3B" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 84/165 (50%), Positives = 105/165 (63%)

Query:     6 EPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPASSNL 65
             +PLVVGR++GDV+D F   T ++V YG + V+NGCE+KPS    +P V +      +   
Sbjct:     8 DPLVVGRIVGDVLDPFVRITNLSVSYGARIVSNGCELKPSMVTQQPRVVVGGNDMRT--F 65

Query:    66 YTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHRYVFAL 123
             YTLVMVDPDAPSPS P  RE+LHW+V DIP  + AT  +E++ Y  P+P  GIHR VF L
Sbjct:    66 YTLVMVDPDAPSPSNPNLREYLHWLVTDIPGTTGATFGQEVMCYESPRPTMGIHRLVFVL 125

Query:   124 FNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKE 168
             F Q G+       P  R NFSTR FA    L  PVA VYFN Q+E
Sbjct:   126 FQQLGRQTVYA--PGWRQNFSTRNFAELYNLGSPVATVYFNCQRE 168

GO:0009909 "regulation of flower development" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XFK7	MFT_ARATH	No assigned EC number	0.5738	0.9827	0.9884	yes	no
Q9XH43	CET2_TOBAC	No assigned EC number	0.5058	0.9540	0.9485	N/A	no
Q9XH44	CET1_TOBAC	No assigned EC number	0.5113	0.9712	0.9712	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
PLN00169	175	PLN00169, PLN00169, CETS family protein; Provision	1e-60
cd00866	154	cd00866, PEBP_euk, PhosphatidylEthanolamine-Bindin	2e-46
pfam01161	147	pfam01161, PBP, Phosphatidylethanolamine-binding p	2e-28
cd00457	159	cd00457, PEBP, PhosphatidylEthanolamine-Binding Pr	9e-18
COG1881	174	COG1881, COG1881, Phospholipid-binding protein [Ge	2e-11
cd00865	150	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-	4e-11
TIGR00481	141	TIGR00481, TIGR00481, Raf kinase inhibitor-like pr	4e-06
PRK10257	158	PRK10257, PRK10257, putative kinase inhibitor prot	0.001

>gnl|CDD|177765 PLN00169, PLN00169, CETS family protein; Provisional

 Score =  185 bits (471), Expect = 1e-60
 Identities = 88/170 (51%), Positives = 109/170 (64%), Gaps = 6/170 (3%)

Query: 1   MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPP 60
             R  +PLVVGRV+GDV+D FT +  + V YG+++V NGCE+KPS   ++P V I     
Sbjct: 2   SPRDRDPLVVGRVVGDVLDPFTRSISLRVTYGSREVNNGCELKPSQVVNQPRVDIGGED- 60

Query: 61  ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHR 118
                YTLVMVDPDAPSPS P  RE+LHW+V DIP  + AT  +E+V Y  P+P  GIHR
Sbjct: 61  -LRTFYTLVMVDPDAPSPSNPNLREYLHWLVTDIPATTGATFGQEVVCYESPRPTAGIHR 119

Query: 119 YVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKE 168
           +VF LF Q G+       P  R NF+TR FA    L  PVAAVYFN Q+E
Sbjct: 120 FVFVLFRQLGRQTV--YAPGWRQNFNTRDFAELYNLGSPVAAVYFNCQRE 167

Length = 175

>gnl|CDD|176644 cd00866, PEBP_euk, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes

 Score =  149 bits (377), Expect = 2e-46
 Identities = 66/155 (42%), Positives = 82/155 (52%), Gaps = 15/155 (9%)

Query: 25  TEMTVHYG-TKQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRY 83
            ++TV YG +  V  G  + PS +   P+V   +  P    LYTLVMVDPDAPS  +P++
Sbjct: 1   VDLTVSYGSSGVVTPGNLLTPSETQKAPTVSFSSEDPPDK-LYTLVMVDPDAPSRDDPKF 59

Query: 84  REWLHWIVVDIPEGSDAT------KELVAYMGPQPP--TGIHRYVFALFNQKGKVM---- 131
           REWLHW+V +IP     T      + LV Y+GP PP  TG HRYVF LF Q G +     
Sbjct: 60  REWLHWLVTNIPGSDTTTGLVSKGEVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFPES 119

Query: 132 -AGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNS 165
                    R  F  R FA  NGL  PVAA +F  
Sbjct: 120 KLPPTSGLGRRGFDVREFAKKNGLGLPVAANFFQV 154

PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). Length = 154

>gnl|CDD|216338 pfam01161, PBP, Phosphatidylethanolamine-binding protein

 Score =  102 bits (255), Expect = 2e-28
 Identities = 52/159 (32%), Positives = 68/159 (42%), Gaps = 32/159 (20%)

Query: 25  TEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPASSN--LYTLVMVDPDAPSPSEPR 82
             + V Y    V  G  + P  S           P  S     Y LVMVDPDAPS S+P+
Sbjct: 2   GPLPVEYTGAFVCPGNNLSPPLSWSDA-------PTISDGTKSYALVMVDPDAPSRSDPK 54

Query: 83  YREWLHWIVVDIPEG------------SDATKELVAYMGPQPP--TGIHRYVFALFNQKG 128
             E+LHW+V +IP              +D  + L  Y+GP PP  TG HRYVF L+    
Sbjct: 55  GSEFLHWLVTNIPASVTELPGGGVQGVNDFGQTLAGYIGPCPPPGTGPHRYVFLLYALDE 114

Query: 129 K--VMAGCRPPDARSNFSTRRFAADNGLQPP-VAAVYFN 164
           K  + AG    + R  F        + L P  +A  +F 
Sbjct: 115 KLDLPAGVTRAELREAFK------GHVLGPATLAGNFFR 147

Length = 147

>gnl|CDD|176642 cd00457, PEBP, PhosphatidylEthanolamine-Binding Protein (PEBP) domain

 Score = 75.5 bits (186), Expect = 9e-18
 Identities = 40/141 (28%), Positives = 52/141 (36%), Gaps = 34/141 (24%)

Query: 50  KPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIP-----------EGS 98
            PS+    PPP     Y LVM DPDAP       R  +H +V  IP             +
Sbjct: 26  FPSLSWDGPPP-DVKEYVLVMEDPDAPLG-----RPIVHGLVYGIPANKTSLSNDDFVVT 79

Query: 99  DATKELV-------------AYMGPQPP--TGIHRYVFALFNQKGKVMAGCRPPDARSNF 143
           D  K  +              Y+GP+PP   G HRY F ++     +    +  D R+ F
Sbjct: 80  DNGKGGLQGGFKYGKNRGGTVYIGPRPPLGHGPHRYFFQVYALDEPLDRS-KLGDGRTKF 138

Query: 144 STRRFAADNGLQPPVAAVYFN 164
              RFA  N L   V      
Sbjct: 139 EVARFAEGNVLG-AVGEWVGQ 158

PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer). Length = 159

>gnl|CDD|224793 COG1881, COG1881, Phospholipid-binding protein [General function prediction only]

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 30/140 (21%)

Query: 10  VGRVIGDVVDMFTP---ATEMTVHYGTKQVANGCEIKPSASADKP--SVQIH-APPPASS 63
           +  ++       +    A    +   +   A+G  I    +   P  S  +  +  P  +
Sbjct: 1   MSSILKAAALAASMAIFAELAVMGLISNAFADGAPIPDEYTCGGPNISPPLSWSGVPEGT 60

Query: 64  NLYTLVMVDPDAPSPSEPRYREWLHWIVVDIP---------EGSDATKELV--------- 105
             + L + DPDAP+        W+HW+V +IP          G  +   +V         
Sbjct: 61  KSFALTVDDPDAPTGGG-----WVHWVVANIPADVTELPEGSGPKSKIGIVQGINDFGSR 115

Query: 106 AYMGPQPPTG-IHRYVFALF 124
            Y GP PP G  HRY F ++
Sbjct: 116 GYGGPCPPKGHGHRYYFTVY 135

Length = 174

>gnl|CDD|176643 cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea

 Score = 57.6 bits (140), Expect = 4e-11
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 27/89 (30%)

Query: 56  HAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIP-------EGSDATKELV--- 105
             P    S    L++ DPDAP+        ++HW+V +IP       EG+          
Sbjct: 34  GVPAGTKS--LALIVEDPDAPTGGG-----FVHWVVWNIPADTTELPEGASRGALPAGAV 86

Query: 106 ---------AYMGPQPP-TGIHRYVFALF 124
                     Y GP PP  G HRYVF ++
Sbjct: 87  QGRNDFGEAGYGGPCPPDGGPHRYVFTVY 115

PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members. Length = 150

>gnl|CDD|129572 TIGR00481, TIGR00481, Raf kinase inhibitor-like protein, YbhB/YbcL family

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 27/87 (31%)

Query: 60  PASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPE---------GSDATK-------- 102
           P  +    L  +DPDAP+        W HW+VV+IP           SD  +        
Sbjct: 24  PEGAKSLALTCIDPDAPTGCG-----WWHWVVVNIPADTTVLPENASSDDKRLPQGVPLQ 78

Query: 103 -----ELVAYMGPQPPTGIHRYVFALF 124
                    Y+GP PP G HRY+F ++
Sbjct: 79  GRNDFGKSGYIGPCPPKGDHRYLFTVY 105

[Unknown function, General]. Length = 141

>gnl|CDD|182339 PRK10257, PRK10257, putative kinase inhibitor protein; Provisional

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 27/84 (32%)

Query: 60  PASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDI------------------PEGSDAT 101
           PA +  + +   DPDAP+ S      W HW+VV++                  P+G   T
Sbjct: 40  PAGTKSFVVTCYDPDAPTGSG-----WWHWVVVNLPADTRVLPQGFGSGLVALPDGVLQT 94

Query: 102 KE---LVAYMGPQPPTG-IHRYVF 121
           +       Y G  PP G  HRY+F
Sbjct: 95  RTDFGKAGYGGAAPPKGETHRYIF 118

Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
PLN00169	175	CETS family protein; Provisional	100.0
KOG3346	185	consensus Phosphatidylethanolamine binding protein	100.0
cd00866	154	PEBP_euk PhosphatidylEthanolamine-Binding Protein	100.0
PF01161	146	PBP: Phosphatidylethanolamine-binding protein; Int	99.95
cd00457	159	PEBP PhosphatidylEthanolamine-Binding Protein (PEB	99.92
PRK10257	158	putative kinase inhibitor protein; Provisional	99.83
PRK09818	183	putative kinase inhibitor; Provisional	99.8
cd00865	150	PEBP_bact_arch PhosphatidylEthanolamine-Binding Pr	99.8
COG1881	174	Phospholipid-binding protein [General function pre	99.78
TIGR00481	141	Raf kinase inhibitor-like protein, YbhB/YbcL famil	99.77

>PLN00169 CETS family protein; Provisional

Probab=100.00  E-value=5.6e-53  Score=323.82  Aligned_cols=170  Identities=52%  Similarity=0.902  Sum_probs=156.5

Q ss_pred             CcccccccccCCcccccCCCCCCCeEEEEEECCeeecCCCccCCCCCCCCCeEEEeCCCCCCCcceEEEEECCCCCCCCC
Q 030636            1 MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSE   80 (174)
Q Consensus         1 ~~~~~~~l~~~~i~pdvl~~f~P~~~L~V~y~~~~v~~G~~l~~~~t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~   80 (174)
                      |.+++++|+.++||||||+.|.|+..|+|+|++..|.+|+.|++++++.+|+|+|.+.+.  +++|||+|+|||+|++.+
T Consensus         2 ~~~~~~~l~~~~iipdvid~f~P~~~L~V~y~s~~V~~G~~l~p~~t~~~P~i~~~~~~~--~~~ytlim~DpDaP~~~~   79 (175)
T PLN00169          2 SPRDRDPLVVGRVVGDVLDPFTRSISLRVTYGSREVNNGCELKPSQVVNQPRVDIGGEDL--RTFYTLVMVDPDAPSPSN   79 (175)
T ss_pred             CcccccchhhCCcCCcccCCcCCceEEEEEECCcCcCCcCCCCHHHhccCCEEEEccCCC--CceeEEEEECCCCCCCCC
Confidence            788999999999999999999999999999999999999999999999999999986543  578999999999999999


Q ss_pred             CCCceeEEEEEeeeCCCCCC--CcceecccCCCCCCCCceEEEEEEeeCCCCcCCCCCCCCCCCCCHHHHHHHhCCCCce
Q 030636           81 PRYREWLHWIVVDIPEGSDA--TKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPV  158 (174)
Q Consensus        81 ~~~~~~lHwl~~ni~~~~~~--~~~~~~Y~~P~P~~G~HRY~fll~~q~~~~~~~~~~~~~R~~Fn~~~f~~~~~L~~pv  158 (174)
                      +++++||||+++||+++...  .+.+++|+||+|++|+|||+|+||+|++.+...  .+..|.+||+++|+++++|+.||
T Consensus        80 ~~~~~~~HW~v~nip~~~~~~~g~~~~~Y~~P~Pp~G~HRYvflly~Q~~~~~~~--~~~~R~~F~~~~Fa~~~~L~~Pv  157 (175)
T PLN00169         80 PNLREYLHWLVTDIPATTGATFGQEVVCYESPRPTAGIHRFVFVLFRQLGRQTVY--APGWRQNFNTRDFAELYNLGSPV  157 (175)
T ss_pred             CCcccEEEEEEeCCccccccccCccceeecCCCCCCCceeEEEEEEEcCCCcccC--CcccCCCcCHHHHHHHhCCCCce
Confidence            99999999999999987543  277899999999999999999999999887643  35679999999999999999999


Q ss_pred             EEeEEEEeeCCcCCCC
Q 030636          159 AAVYFNSQKEVAVRKR  174 (174)
Q Consensus       159 a~~~f~~~~d~~~~~~  174 (174)
                      |||||++||++++++|
T Consensus       158 A~nfF~a~~~~~~~~~  173 (175)
T PLN00169        158 AAVYFNCQRESGSGGR  173 (175)
T ss_pred             EEEEEEEecCCcCCcc
Confidence            9999999999998876

>KOG3346 consensus Phosphatidylethanolamine binding protein [General function prediction only]

Probab=100.00  E-value=6.8e-51  Score=312.14  Aligned_cols=172  Identities=42%  Similarity=0.796  Sum_probs=157.2

Q ss_pred             CcccccccccCCcccccCCCCCCCeEEEEEECC-eeecCCCccCCCCCCCCCeEEEeCCCCCCCcceEEEEECCCCCCCC
Q 030636            1 MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGT-KQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPS   79 (174)
Q Consensus         1 ~~~~~~~l~~~~i~pdvl~~f~P~~~L~V~y~~-~~v~~G~~l~~~~t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~   79 (174)
                      |..+.+.+.+++|++|||+.+.|+..|+|+|++ ..|++|+.|+++++...|.|+|.+.. ..+++|||||+|||||+++
T Consensus         1 ~~~~~~~~~~~~iv~Dvl~~~~p~~~l~V~y~~~~~v~~G~~l~pt~~~~~P~v~~~~~a-~~~~~yTLvm~DPDaPsr~   79 (185)
T KOG3346|consen    1 MSDIRDPLNKHRIVPDVLDDFEPSVKLNVTYNSDIVVENGNELTPTQVKNRPIVSWDGFA-DPGSLYTLVMTDPDAPSRS   79 (185)
T ss_pred             CcchhhhhhccCcchhhhccCCCceEEEEEeCCCeeecCCCEeCchhhccCCeEEEcCcC-CCCCeEEEEEeCCCCCCCC
Confidence            677889999999999999999999999999986 89999999999999999999999752 2378999999999999999


Q ss_pred             CCCCceeEEEEEeeeCCCCC-C-CcceecccCCCCC--CCCceEEEEEEeeCCCCcCCCCCCCCCCCCCHHHHHHHhCCC
Q 030636           80 EPRYREWLHWIVVDIPEGSD-A-TKELVAYMGPQPP--TGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQ  155 (174)
Q Consensus        80 ~~~~~~~lHwl~~ni~~~~~-~-~~~~~~Y~~P~P~--~G~HRY~fll~~q~~~~~~~~~~~~~R~~Fn~~~f~~~~~L~  155 (174)
                      +|++++|||||++|||+++. + +++++.|+||.|+  +|.|||+|+||+|+.+.+.....+..|.+||+++|+++++|+
T Consensus        80 ~p~~rE~lHWlV~nIPg~~~~~~G~~i~~Y~~P~Pp~~tG~HRyVfll~rQ~~~~~~~~~~~~~R~~F~~~~F~~~~~lg  159 (185)
T KOG3346|consen   80 DPKFREWLHWLVTNIPGTDGISKGQEISEYLGPGPPKGTGLHRYVFLLYRQPGRLDSDEPSPLSRGNFNTRKFAKKYELG  159 (185)
T ss_pred             CCcceeEEEEEEEeecCCccccCCeEeeeeeCCCCCCCCCceEEEEEEEEcCCccccccCCCCcccceeHHHHHHHhccC
Confidence            99999999999999999883 3 2999999999996  899999999999999988754335789999999999999999


Q ss_pred             CceEEeEEEEeeCCcCCC
Q 030636          156 PPVAAVYFNSQKEVAVRK  173 (174)
Q Consensus       156 ~pva~~~f~~~~d~~~~~  173 (174)
                      +||||+||++|||+.+.+
T Consensus       160 ~PvA~~~f~aq~d~~~~~  177 (185)
T KOG3346|consen  160 TPVAGNFFQAQWDDYVPK  177 (185)
T ss_pred             CchhhheehhhcchhhHH
Confidence            999999999999997754

>cd00866 PEBP_euk PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes

Probab=100.00  E-value=1.5e-37  Score=234.31  Aligned_cols=139  Identities=47%  Similarity=0.861  Sum_probs=124.2

Q ss_pred             EEEEEECC-eeecCCCccCCCCCCCCCeEEEeCCCCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeeeCCCCCC----
Q 030636           26 EMTVHYGT-KQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDA----  100 (174)
Q Consensus        26 ~L~V~y~~-~~v~~G~~l~~~~t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~~----  100 (174)
                      .|.|+|++ ..+.+|+.|++++++.+|+|+|..... .+++|+|||+|||+|.+.++.++++||||++||+.+...    
T Consensus         2 ~l~v~y~~~~~v~~G~~l~~~~~~~~P~i~~~~~~~-~~~~y~lvm~DpD~p~~~~~~~~~~lHwl~~ni~~~~~~~~~~   80 (154)
T cd00866           2 DLTVSYGSSGVVTPGNLLTPSETQKAPTVSFSSEDP-PDKLYTLVMVDPDAPSRDDPKFREWLHWLVTNIPGSDTTTGLV   80 (154)
T ss_pred             eEEEEECCCcCcCCCCCCCHHHhCcCCeEEEecCCC-CCCeEEEEEECCCCCCCCCCCCCCEEEEEEeCcCCcccccccc
Confidence            68999998 899999999999999999999998763 367899999999999999999999999999999987642    


Q ss_pred             --CcceecccCCCCC--CCCceEEEEEEeeCCCCcCCCC-----CCCCCCCCCHHHHHHHhCCCCceEEeEEEE
Q 030636          101 --TKELVAYMGPQPP--TGIHRYVFALFNQKGKVMAGCR-----PPDARSNFSTRRFAADNGLQPPVAAVYFNS  165 (174)
Q Consensus       101 --~~~~~~Y~~P~P~--~G~HRY~fll~~q~~~~~~~~~-----~~~~R~~Fn~~~f~~~~~L~~pva~~~f~~  165 (174)
                        ...+++|+||+|+  +|+|||+|+||+|+..+.+...     ....|.+||+++|++++||+.|||+|||++
T Consensus        81 ~~~~~~~~Y~~P~Pp~g~g~HRY~fll~~q~~~~~~~~~~~~~~~~~~r~~F~~~~F~~~~~L~~pva~~~f~~  154 (154)
T cd00866          81 SKGEVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFPESKLPPTSGLGRRGFDVREFAKKNGLGLPVAANFFQV  154 (154)
T ss_pred             CCCCCcceeeCCCCCCCCCCccEEEEEEEeCCccCccccccccCCccccCCcCHHHHHHHhCCCCcEEEEEEeC
Confidence              2788999999995  5799999999999998887641     356899999999999999999999999985

PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer).

>PF01161 PBP: Phosphatidylethanolamine-binding protein; InterPro: IPR008914 The PEBP (PhosphatidylEthanolamine-Binding Protein) family is a highly conserved group of proteins that have been identified in numerous tissues in a wide variety of organisms, including bacteria, yeast, nematodes, plants, drosophila and mammals

Probab=99.95  E-value=3.5e-28  Score=181.57  Aligned_cols=127  Identities=38%  Similarity=0.791  Sum_probs=101.2

Q ss_pred             eEEEEEE-CCeeecCCCccCCCC-CCCCCeEEEeCCCCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeeeC-------
Q 030636           25 TEMTVHY-GTKQVANGCEIKPSA-SADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIP-------   95 (174)
Q Consensus        25 ~~L~V~y-~~~~v~~G~~l~~~~-t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~-------   95 (174)
                      ..|.|+| ++..+.+|+.+++.. +...|+         ..+.|+|+|+|+|+|.+.++..+++||||++||+       
T Consensus         2 ~~L~v~f~~~~~~~~G~~~sp~~~~~~~P~---------~~~~y~lim~D~D~P~~~~~~~~~~~Hwl~~ni~~~~~~~~   72 (146)
T PF01161_consen    2 GKLPVKFTGNKSVCPGNNVSPPLSWQNAPT---------GTKSYTLIMVDPDAPSRENPSFGPFLHWLVTNIPSTELPEG   72 (146)
T ss_dssp             CEEEEEECTTEECSTTEEEEGGGECSS-TC---------TTSEEEEEEEETTSSBTTSCTTTSEEEEEEEEEETSEE-TT
T ss_pred             cCcCceeEcccccCCCCCCCcCcccccCCC---------CCcEEEEEEECCCCCccccCCCCcEEEEEEcCCCCccCCCC
Confidence            4699999 789999999998888 777777         2457999999999999888889999999999999       


Q ss_pred             --C---CCCC-CcceecccCCCCC--CCCceEEEEEEeeCCCCcCCCCCCCCCCCCCHHHHHHHhCCCCc-eEEeEEE
Q 030636           96 --E---GSDA-TKELVAYMGPQPP--TGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPP-VAAVYFN  164 (174)
Q Consensus        96 --~---~~~~-~~~~~~Y~~P~P~--~G~HRY~fll~~q~~~~~~~~~~~~~R~~Fn~~~f~~~~~L~~p-va~~~f~  164 (174)
                        .   .... ...+++|.||+|+  +|.|||+|+||+|+..+.+.    .....+++++.+++++|+.+ +|++||+
T Consensus        73 ~~~~~~~~~~~g~~~~~Y~~P~Pp~g~g~HrY~f~ly~q~~~~~l~----~~~~~~~~~~~~~~~~L~~~~l~~~y~r  146 (146)
T PF01161_consen   73 SDGARQGINSSGQVIAPYLGPCPPKGSGPHRYVFLLYAQPSPLPLS----DGATKFDLREAFKGHGLGPASLAGNYFR  146 (146)
T ss_dssp             SSTCETSBGGTSEEEES--SB-SSTTSSCEEEEEEEEEESSSSTSG----BSSTHHTHHHHHHHTTEESEESEEEEEE
T ss_pred             CCccEecccccCccccEEcCCcCcCcCCCceEEEEEEEcCCCCCCC----CCCCHHHHHHHHHcCCCCCceEEEEEEC
Confidence              1   0001 1347999999996  56999999999999966552    23456889999999999887 8999997

The various functions described for members of this family include lipid binding, neuronal development [], serine protease inhibition [], the control of the morphological switch between shoot growth and flower structures [], and the regulation of several signalling pathways such as the MAP kinase pathway [], and the NF-kappaB pathway []. The control of the latter two pathways involves the PEBP protein RKIP, which interacts with MEK and Raf-1 to inhibit the MAP kinase pathway, and with TAK1, NIK, IKKalpha and IKKbeta to inhibit the NF-kappaB pathway. Other PEBP-like proteins that show strong structural homology to PEBP include Escherichia coli YBHB and YBCL, the Rattus norvegicus (Rat) neuropeptide HCNP, and Antirrhinum majus (Garden snapdragon) protein centroradialis (CEN). Structures have been determined for several members of the PEBP-like family, all of which show extensive fold conservation. The structure consists of a large central beta-sheet flanked by a smaller beta-sheet on one side, and an alpha helix on the other. Sequence alignments show two conserved central regions, CR1 and CR2, that form a consensus signature for the PEBP family. These two regions form part of the ligand-binding site, which can accommodate various anionic groups. The N- and C-terminal regions are the least conserved, and may be involved in interactions with different protein partners. The N-terminal residues 2-12 form the natural cleavage peptide HCNP involved in neuronal development. The C-terminal region is deleted in plant and bacterial PEBP homologues, and may help control accessibility to the active site. ; PDB: 1BD9_A 1BEH_A 2QYQ_A 2L7W_A 3AXY_A 2IQX_C 2IQY_A 1KN3_A 1FUX_A 1B7A_A ....

>cd00457 PEBP PhosphatidylEthanolamine-Binding Protein (PEBP) domain

Probab=99.92  E-value=9.3e-25  Score=165.71  Aligned_cols=124  Identities=33%  Similarity=0.533  Sum_probs=98.6

Q ss_pred             eeecC-CCccCC----CCCCCCCeEEEeCCCCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeeeCCCCCC--------
Q 030636           34 KQVAN-GCEIKP----SASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDA--------  100 (174)
Q Consensus        34 ~~v~~-G~~l~~----~~t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~~--------  100 (174)
                      ..|.+ |+.|+.    .....+|.|+|++.+.+ .+.|+|+|+|||+|..     ++|+||+++||+.+...        
T Consensus         5 ~~~~~~g~~lp~~~~~~g~~~sP~l~w~~~p~~-t~s~ali~~DpDap~~-----~~~~HWvv~nIp~~~~~~~~~~~~~   78 (159)
T cd00457           5 PEVGPSGSVLPPEYSFEGVGRFPSLSWDGPPPD-VKEYVLVMEDPDAPLG-----RPIVHGLVYGIPANKTSLSNDDFVV   78 (159)
T ss_pred             CCcCCCCCccChhhccCCCCcCCceEecCCCCC-CeEEEEEEECCCCCCC-----CCceEEEEeccCccccccccccccc
Confidence            45666 888888    55567999999987644 4568999999999843     48999999999976521        


Q ss_pred             ------Cc----------ceecccCCCCCC--CCceEEEEEEeeCCCCcCCCCCCCCCCCCCHHHHHHHhCCCCceEEeE
Q 030636          101 ------TK----------ELVAYMGPQPPT--GIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVY  162 (174)
Q Consensus       101 ------~~----------~~~~Y~~P~P~~--G~HRY~fll~~q~~~~~~~~~~~~~R~~Fn~~~f~~~~~L~~pva~~~  162 (174)
                            ..          ....|.||+|+.  |.|||+|+||+|+..+.... ....|..|++.+|++.+.|+ ++|.++
T Consensus        79 ~~~~~~~~~~~n~~g~~~~~~~Y~GP~PP~G~g~HrY~f~lyald~~~~~~~-~~~~~~~~~~~~~~~~~vL~-~~a~~~  156 (159)
T cd00457          79 TDNGKGGLQGGFKYGKNRGGTVYIGPRPPLGHGPHRYFFQVYALDEPLDRSK-LGDGRTKFEVARFAEGNVLG-AVGEWV  156 (159)
T ss_pred             CCCCccceeccccccccCCCcCCcCCCCCCCCCCeeEEEEEEEecCcccccc-ccCCCCHHHHHHHHHhCeee-EEEEEE
Confidence                  00          245999999975  58999999999999887641 13578999999999999997 689998


Q ss_pred             EEE
Q 030636          163 FNS  165 (174)
Q Consensus       163 f~~  165 (174)
                      +++
T Consensus       157 ~~~  159 (159)
T cd00457         157 GQF  159 (159)
T ss_pred             EEC
Confidence            863

PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer).

>PRK10257 putative kinase inhibitor protein; Provisional

Probab=99.83  E-value=8.8e-20  Score=137.98  Aligned_cols=108  Identities=22%  Similarity=0.486  Sum_probs=82.0

Q ss_pred             CeeecCCCccCCCCCC---------CCCeEEEeCCCCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeeeCCCCCCC--
Q 030636           33 TKQVANGCEIKPSASA---------DKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--  101 (174)
Q Consensus        33 ~~~v~~G~~l~~~~t~---------~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~~~--  101 (174)
                      +..+.+|..|+...+.         .+|.|+|++.+.++. .|+|+|+|||+|..     ..|+||+++|||++....  
T Consensus         5 S~~f~~g~~ip~~~~~~~~~~~G~n~SP~L~w~~~P~~t~-s~ali~~DpDap~~-----~~~~HWvv~nIP~~~~~l~e   78 (158)
T PRK10257          5 SNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTK-SFVVTCYDPDAPTG-----SGWWHWVVVNLPADTRVLPQ   78 (158)
T ss_pred             ccCccCcCCCCHHHcccccCCCCCCCCceEEEcCCCCCce-EEEEEEECCCCCCC-----CcEEEEEEEcCCCCcccccC
Confidence            5667788888765442         599999998876555 57999999999874     279999999999753210  


Q ss_pred             -------------------cceecccCCCCCCC-CceEEEEEEeeC-CCCcCCCCCCCCCCCCCHHHHHHHhC
Q 030636          102 -------------------KELVAYMGPQPPTG-IHRYVFALFNQK-GKVMAGCRPPDARSNFSTRRFAADNG  153 (174)
Q Consensus       102 -------------------~~~~~Y~~P~P~~G-~HRY~fll~~q~-~~~~~~~~~~~~R~~Fn~~~f~~~~~  153 (174)
                                         .....|.||+|+.| .|||+|.||+++ ..+.+.       .+++..++.++..
T Consensus        79 g~~~~~~~~p~g~~~g~n~~g~~gY~GP~PP~g~~HrY~f~vyALd~~~L~l~-------~~~~~~~l~~a~~  144 (158)
T PRK10257         79 GFGSGLVALPDGVLQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVERIDVD-------EGASGAMVGFNVH  144 (158)
T ss_pred             CCCcccccCCCCceeccccCCCccCcCCCCccCCCceEEEEEEEecCcccCCC-------CCCCHHHHHHHHh
Confidence                               22568999999887 799999999999 467764       2445666666654

>PRK09818 putative kinase inhibitor; Provisional

Probab=99.80  E-value=4e-19  Score=137.22  Aligned_cols=111  Identities=27%  Similarity=0.497  Sum_probs=82.3

Q ss_pred             EEEEECCeeecCCCccCCCCC---------CCCCeEEEeCCCCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeeeCCC
Q 030636           27 MTVHYGTKQVANGCEIKPSAS---------ADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEG   97 (174)
Q Consensus        27 L~V~y~~~~v~~G~~l~~~~t---------~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~   97 (174)
                      +.|+  +..+.+|..|+..++         ..+|.|+|++.+.++. .|+|+|.|||+|...     .|+||+++|||++
T Consensus        22 ~~lt--S~~f~~G~~ip~~~~~~~~~~~G~n~SP~L~W~~~P~gtk-s~aLi~~DpDaP~g~-----~~~HWvv~nIP~~   93 (183)
T PRK09818         22 FQVT--SNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGAPEGTK-SFAVTVYDPDAPTGS-----GWWHWTVANIPAT   93 (183)
T ss_pred             EEEE--CcCccCcCCCCHHHcccccCCCCCCcceeEEEccCCCCcE-EEEEEEECCCCCCCC-----cEEEEEEEcCCCC
Confidence            5554  777889999986532         2699999998876555 579999999998752     6999999999875


Q ss_pred             CCCC----------------------cceecccCCCCCCC--CceEEEEEEeeC-CCCcCCCCCCCCCCCCCHHHHHHHh
Q 030636           98 SDAT----------------------KELVAYMGPQPPTG--IHRYVFALFNQK-GKVMAGCRPPDARSNFSTRRFAADN  152 (174)
Q Consensus        98 ~~~~----------------------~~~~~Y~~P~P~~G--~HRY~fll~~q~-~~~~~~~~~~~~R~~Fn~~~f~~~~  152 (174)
                      ....                      .....|.||||+.|  +|||+|.||+++ ..+.+.       .++...++.++.
T Consensus        94 ~~~l~eg~~~~~~~~~~~g~~~g~N~~g~~gY~GP~PP~G~g~HrY~F~vyALd~~~l~l~-------~~~~~~~l~~~~  166 (183)
T PRK09818         94 VTYLPADAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTDKIPVD-------SNSSGALVGYML  166 (183)
T ss_pred             ccccCCCCcccccccCCCCCEEeecCCCCCceECCCCccCCCCEEEEEEEEEecCcccCCC-------CCCCHHHHHHHH
Confidence            3210                      23468999999654  899999999999 456654       244555655554

>cd00865 PEBP_bact_arch PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea

Probab=99.80  E-value=1.5e-18  Score=130.48  Aligned_cols=106  Identities=25%  Similarity=0.462  Sum_probs=82.6

Q ss_pred             ecCCCccCCCC--C----CCCCeEEEeCCCCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeeeCCCCCCC--------
Q 030636           36 VANGCEIKPSA--S----ADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--------  101 (174)
Q Consensus        36 v~~G~~l~~~~--t----~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~~~--------  101 (174)
                      +..|..++...  +    ..+|.|+|++.+.++ +.|+|+|+|+|+|..     .+|+||+++||+......        
T Consensus         7 ~~~g~~~p~~~~~~~~g~~~SP~l~w~~~p~~t-~s~al~m~D~Dap~~-----~~~~HW~~~nIp~~~~~i~~g~~~~~   80 (150)
T cd00865           7 FFDGGPIPKKYAFTCDGENVSPPLSWSGVPAGT-KSLALIVEDPDAPTG-----GGFVHWVVWNIPADTTELPEGASRGA   80 (150)
T ss_pred             ccCcCCCChhhcccCCCCCcCCCeEEcCCCCCC-eEEEEEEEcCCCCCC-----CCEEEEEEeccCcccccccCCccccc
Confidence            34466666555  3    369999999887554 458999999999833     489999999999862110        


Q ss_pred             -----------cceecccCCCCCC-CCceEEEEEEeeCCCCcCCCCCCCCCCCCCHHHHHHHhCC
Q 030636          102 -----------KELVAYMGPQPPT-GIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGL  154 (174)
Q Consensus       102 -----------~~~~~Y~~P~P~~-G~HRY~fll~~q~~~~~~~~~~~~~R~~Fn~~~f~~~~~L  154 (174)
                                 .....|.||+|+. +.|||+|+||+++..+.+.       .+++..++.++..-
T Consensus        81 ~~~~~~~g~n~~~~~~Y~gP~Pp~~~~HrY~f~vyAld~~l~~~-------~~~~~~~l~~ai~~  138 (150)
T cd00865          81 LPAGAVQGRNDFGEAGYGGPCPPDGGPHRYVFTVYALDVPLLLP-------PGATRAELLFAMKG  138 (150)
T ss_pred             CCCCCeEeecCCCCCeecCCCCcCCCceEEEEEEEEeCCccCCC-------CCCCHHHHHHHHhh
Confidence                       3578999999986 8999999999999887652       57888888888764

PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.

>COG1881 Phospholipid-binding protein [General function prediction only]

Probab=99.78  E-value=1.9e-18  Score=132.39  Aligned_cols=108  Identities=26%  Similarity=0.520  Sum_probs=82.4

Q ss_pred             CCeeecCCCccCCCCC----CCCCeEEEeCCCCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeeeCCCCCCC------
Q 030636           32 GTKQVANGCEIKPSAS----ADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT------  101 (174)
Q Consensus        32 ~~~~v~~G~~l~~~~t----~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~~~------  101 (174)
                      -+..+..|+.++...+    ..+|.++|++.+.++++ |+|+|.|||||..     ..|+||+++||+.+....      
T Consensus        26 ~s~~f~~g~~ip~~~t~~g~~~sPpl~ws~~P~~tkS-~AL~v~DpDAP~g-----~~~~HWvv~nIp~~~~~~~~~~~~   99 (174)
T COG1881          26 ISNAFADGAPIPDEYTCGGPNISPPLSWSGVPEGTKS-FALTVDDPDAPTG-----GGWVHWVVANIPADVTELPEGSGP   99 (174)
T ss_pred             cchhhhCCCccchhhhcCCCCcCCceeecCCCCCCee-EEEEEECCCCCCC-----CcEEEEEEEccCCccccccccccc
Confidence            3678889999987765    36999999998876665 7999999999974     489999999999732210      


Q ss_pred             ------------cceecccCCCCCCCC-ceEEEEEEeeCCCCcCCCCCCCCCCCCCHHHHHHH
Q 030636          102 ------------KELVAYMGPQPPTGI-HRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAAD  151 (174)
Q Consensus       102 ------------~~~~~Y~~P~P~~G~-HRY~fll~~q~~~~~~~~~~~~~R~~Fn~~~f~~~  151 (174)
                                  ..-..|.|||||.|. |||.|.||+++-.....      -.+|+..++.++
T Consensus       100 ~~~~~~~qg~Nd~g~~~Y~Gp~PP~g~~HrY~f~vyALd~~~~~~------~~g~~~~~~~~~  156 (174)
T COG1881         100 KSKIGIVQGINDFGSRGYGGPCPPKGHGHRYYFTVYALDVELLLL------PAGASGAELGKA  156 (174)
T ss_pred             ccccceEEeeccccccCcccCCCCCCCCeEEEEEEEEcccccccC------CCCCCHHHHHHH
Confidence                        334569999998876 99999999999865432      145655555444

>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family

Probab=99.77  E-value=4.9e-18  Score=126.45  Aligned_cols=94  Identities=29%  Similarity=0.596  Sum_probs=74.9

Q ss_pred             CCCCeEEEeCCCCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeeeCCCCCCC----------------------ccee
Q 030636           48 ADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT----------------------KELV  105 (174)
Q Consensus        48 ~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~~~----------------------~~~~  105 (174)
                      ..+|.|+|++.+.++. .|+|+|+|+|+|...     .|+||+++||+++....                      ....
T Consensus        13 n~SP~l~w~~~P~~t~-s~al~~~D~Dap~~~-----~~~HWv~~nIp~~~~~l~e~~~~~~~~~~~g~~~~g~n~~g~~   86 (141)
T TIGR00481        13 NISPPLSWDGVPEGAK-SLALTCIDPDAPTGC-----GWWHWVVVNIPADTTVLPENASSDDKRLPQGVPLQGRNDFGKS   86 (141)
T ss_pred             CCCcEEEEcCCCCCce-EEEEEEECCCCCCCC-----CeEEEEEecCCCCcccccCCccccccccCCcceeEeeccCCCc
Confidence            3599999998765544 589999999998753     49999999999742210                      2256


Q ss_pred             cccCCCCCCCCceEEEEEEeeCCC-CcCCCCCCCCCCCCCHHHHHHHhCC
Q 030636          106 AYMGPQPPTGIHRYVFALFNQKGK-VMAGCRPPDARSNFSTRRFAADNGL  154 (174)
Q Consensus       106 ~Y~~P~P~~G~HRY~fll~~q~~~-~~~~~~~~~~R~~Fn~~~f~~~~~L  154 (174)
                      .|.||||+.|.|||+|.||+++.. +.+.       .++...++.++..-
T Consensus        87 ~Y~GP~PP~g~HrY~f~vyALd~~~l~l~-------~~~~~~~l~~ai~g  129 (141)
T TIGR00481        87 GYIGPCPPKGDHRYLFTVYALDTEKLDLD-------PGFSLADLGDAMEG  129 (141)
T ss_pred             cEeCCCCcCCCEEEEEEEEEecCCCCCCC-------CCCCHHHHHHHHhh
Confidence            999999998899999999999976 7663       37888888888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
1wko_A	180	Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana		3e-46
1qou_A	181	Cen (Centroradialis) Protein From Antirrhinum Lengt		3e-42
3axy_A	170	Structure Of Florigen Activation Complex Consisting		2e-41
1wkp_A	171	Flowering Locus T (Ft) From Arabidopsis Thaliana Le		1e-38
2jyz_A	179	Cg7054 Solution Structure Length = 179		3e-25
1a44_A	185	Phosphatidylethanolamine Binding Protein From Calf		2e-15
1b7a_A	186	Structure Of The Phosphatidylethanolamine-Binding P		3e-15
2iqx_A	187	Rat Phosphatidylethanolamine-Binding Protein Contai		7e-15
2iqy_A	190	Rat Phosphatidylethanolamine-Binding Protein Length		9e-15
1bd9_A	187	Human Phosphatidylethanolamine Binding Protein Leng		2e-14
1kn3_A	183	Murine Pebp-2 (Phosphatidylethanolamine-Binding Pro		1e-13
1wpx_B	220	Crystal Structure Of Carboxypeptidase Y Inhibitor C		4e-11
2r77_A	205	Crystal Structure Of Phosphatidylethanolamine-Bindi		6e-06
2gzq_A	200	Phosphatidylethanolamine-Binding Protein From Plasm		2e-05

>pdb|1WKO|A Chain A, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score =  180 bits (457), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 122/175 (69%), Gaps = 5/175 (2%)
Query: 2   ARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPA 61
            R +EPL++GRV+GDV+D FTP T+M V Y  KQV+NG E+ PS+ + KP V+IH     
Sbjct: 9   TRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLR 68
Query: 62  SSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHRY 119
           S   +TLVM+DPD P PS+P  +E LHWIV +IP  +DAT  KE+V+Y  P+P  GIHR+
Sbjct: 69  S--FFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRF 126
Query: 120 VFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           VF LF QK + +     P +R +F+TR+FA +  L  PVAAV+FN+Q+E A RKR
Sbjct: 127 VFVLFRQKQRRVIFPNIP-SRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 180

>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum Length = 181

Iteration: 1
 Score =  167 bits (423), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 89/178 (50%), Positives = 114/178 (64%), Gaps = 9/178 (5%)
Query: 4   SMEPLVVGRVIGDVVDMFTPATEMTVHYGT----KQVANGCEIKPSASADKPSVQIHAPP 59
           S +PLV+GRVIGDVVD FT   +M+V Y +    K V NG E+ PSA    P V++H   
Sbjct: 6   SSDPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGD 65
Query: 60  PASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIH 117
             S   +TL+M DPD P PS+P  RE LHWIV DIP  +D++  KE+V+Y  P+P  GIH
Sbjct: 66  MRS--FFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIH 123
Query: 118 RYVFALFNQKGKVMAGCRPP-DARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           R+VF LF QK +  A   PP   R  F+TR+F  +N L  PVAAV+FN Q+E A R+R
Sbjct: 124 RFVFLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRETAARRR 181

>pdb|3AXY|A Chain A, Structure Of Florigen Activation Complex Consisting Of Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd Homolog Osfd1 Length = 170

Iteration: 1
 Score =  164 bits (415), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/168 (50%), Positives = 111/168 (66%), Gaps = 6/168 (3%)
Query: 3   RSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPAS 62
           R  +PLVVGRV+GDV+D F  +T + V YG+K V+NG E+KPS    +P V++      +
Sbjct: 6   RDRDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGLELKPSMVTHQPRVEVGGNDMRT 65
Query: 63  SNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHRYV 120
              YTLVMVDPDAPSPS+P  RE+LHW+V DIP  + A+  +E+++Y  P+P  GIHR V
Sbjct: 66  --FYTLVMVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMGIHRLV 123
Query: 121 FALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKE 168
           F LF Q G+       P  R NF+T+ FA    L  PVAAVYFNSQ+E
Sbjct: 124 FVLFQQLGR--QTVYAPGWRQNFNTKDFAELYNLGSPVAAVYFNSQRE 169

>pdb|1WKP|A Chain A, Flowering Locus T (Ft) From Arabidopsis Thaliana Length = 171

Iteration: 1
 Score =  155 bits (392), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/165 (48%), Positives = 102/165 (61%), Gaps = 6/165 (3%)
Query: 6   EPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPASSNL 65
           +PL+V RV+GDV+D F  +  + V YG ++V NG  ++PS   +KP V+I        N 
Sbjct: 10  DPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLNLRPSQVQNKPRVEIGGE--DLRNF 67
Query: 66  YTLVMVDPDAPSPSEPRYREWLHWIVVDIP--EGSDATKELVAYMGPQPPTGIHRYVFAL 123
           YTLVMVDPD PSPS P  RE+LHW+V DIP   G+    E+V+Y  P P  GIHR VF L
Sbjct: 68  YTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVSYENPSPTAGIHRVVFIL 127
Query: 124 FNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKE 168
           F Q G+       P  R NF+TR FA    L  PVAAV++NSQ+E
Sbjct: 128 FRQLGR--QTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNSQRE 170

>pdb|2JYZ|A Chain A, Cg7054 Solution Structure Length = 179

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/174 (39%), Positives = 96/174 (55%), Gaps = 14/174 (8%)
Query: 13  VIGDVVDMFTPATEMTVHYGTK-QVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMV 71
           ++ DV+D   PA  + V YG   +V  G E+ P+   D+P V         SNL TL+MV
Sbjct: 4   IVPDVLDA-VPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLE-GKSNLLTLLMV 61
Query: 72  DPDAPSPSEPRYREWLHWIVVDIP---EGSDATKELVAYMGPQPP--TGIHRYVFALFNQ 126
           DPDAP+  +P+YRE LHW VV+IP   E       L  Y+G  PP  TG+HRY+F L+ Q
Sbjct: 62  DPDAPTRQDPKYREILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQ 121
Query: 127 KGKV----MAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKE--VAVRKR 174
           + K+             R NF+ R FAA +GL  P+AA Y+ +Q +  V +R +
Sbjct: 122 ENKIEETPTISNTTRTGRLNFNARDFAAKHGLGEPIAANYYQAQYDDYVPIRNK 175

>pdb|1A44|A Chain A, Phosphatidylethanolamine Binding Protein From Calf Brain Length = 185

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 12/161 (7%)
Query: 23  PATEMTVHYGTKQVAN-GCEIKPSASADKP-SVQIHAPPPASSNLYTLVMVDPDAPSPSE 80
           P   + V YG  +V   G  + P+   ++P S+      P    LYTLV+ DPDAPS  +
Sbjct: 20  PQHPLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPG--KLYTLVLTDPDAPSRKD 77
Query: 81  PRYREWLHWIVVDIPEGSDATKELVA-YMGPQPP--TGIHRYVFALFNQKGKV-----MA 132
           P+YREW H++VV++   + ++  +++ Y+G  PP  TG+HRYV+ ++ Q+G +     + 
Sbjct: 78  PKYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPIL 137
Query: 133 GCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRK 173
             R  D R  F    F     L  PVA   + ++ +  V K
Sbjct: 138 SNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPK 178

>pdb|1B7A|A Chain A, Structure Of The Phosphatidylethanolamine-Binding Protein From Bovine Brain Length = 186

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 12/161 (7%)
Query: 23  PATEMTVHYGTKQVAN-GCEIKPSASADKP-SVQIHAPPPASSNLYTLVMVDPDAPSPSE 80
           P   + V YG  +V   G  + P+   ++P S+      P    LYTLV+ DPDAPS  +
Sbjct: 20  PQHPLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPG--KLYTLVLTDPDAPSRKD 77
Query: 81  PRYREWLHWIVVDIPEGSDATKELVA-YMGPQPP--TGIHRYVFALFNQKGKV-----MA 132
           P+YREW H++VV++   + ++  +++ Y+G  PP  TG+HRYV+ ++ Q+G +     + 
Sbjct: 78  PKYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPIL 137
Query: 133 GCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRK 173
             R  D R  F    F     L  PVA   + ++ +  V K
Sbjct: 138 SNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPK 178

>pdb|2IQX|A Chain A, Rat Phosphatidylethanolamine-Binding Protein Containing The S153e Mutation In The Complex With O-Phosphorylethanolamine Length = 187

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 16/163 (9%)
Query: 23  PATEMTVHYGTKQVAN-GCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEP 81
           P   + V YG   V   G  + P+   ++PS  I         LYTLV+ DPDAPS  +P
Sbjct: 21  PQHALRVDYGGVTVDELGKVLTPTQVMNRPS-SISWDGLDPGKLYTLVLTDPDAPSRKDP 79
Query: 82  RYREWLHWIVVDIPEGSDATKE--LVAYMGPQPP--TGIHRYVFALFNQKGKVMAGCRPP 137
           ++REW H++VV++ +G+D +    L  Y+G  PP  TG+HRYV+ ++ Q+  +   C  P
Sbjct: 80  KFREWHHFLVVNM-KGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPL--NCDEP 136
Query: 138 -------DARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRK 173
                  D R  F    F     L  PVA   F ++ + +V K
Sbjct: 137 ILSNKSGDNRGKFKVEEFRKKYHLGAPVAGTCFQAEWDDSVPK 179

>pdb|2IQY|A Chain A, Rat Phosphatidylethanolamine-Binding Protein Length = 190

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 16/163 (9%)
Query: 23  PATEMTVHYGTKQVAN-GCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEP 81
           P   + V YG   V   G  + P+   ++PS  I         LYTLV+ DPDAPS  +P
Sbjct: 24  PQHALRVDYGGVTVDELGKVLTPTQVMNRPS-SISWDGLDPGKLYTLVLTDPDAPSRKDP 82
Query: 82  RYREWLHWIVVDIPEGSDATKE--LVAYMGPQPP--TGIHRYVFALFNQKGKVMAGCRPP 137
           ++REW H++VV++ +G+D +    L  Y+G  PP  TG+HRYV+ ++ Q+  +   C  P
Sbjct: 83  KFREWHHFLVVNM-KGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPL--NCDEP 139
Query: 138 -------DARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRK 173
                  D R  F    F     L  PVA   F ++ + +V K
Sbjct: 140 ILSNKSGDNRGKFKVESFRKKYHLGAPVAGTCFQAEWDDSVPK 182

>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein Length = 187

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 10/121 (8%)
Query: 62  SSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKELVA--YMGPQPP--TGIH 117
           S  LYTLV+ DPDAPS  +P+YREW H++VV++ +G+D +   V   Y+G  PP  TG+H
Sbjct: 60  SGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNM-KGNDISSGTVLSDYVGSGPPKGTGLH 118
Query: 118 RYVFALFNQKGKV-----MAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVR 172
           RYV+ ++ Q   +     +   R  D R  F    F     L+ PVA   + ++ +  V 
Sbjct: 119 RYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVP 178
Query: 173 K 173
           K
Sbjct: 179 K 179

>pdb|1KN3|A Chain A, Murine Pebp-2 (Phosphatidylethanolamine-Binding Protein-2) Length = 183

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 63  SNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKE--LVAYMGPQPP--TGIHR 118
             LYTL++ DPDAPS  +P YREW H++VV++ +G+D +    L  Y+G  PP  TG+HR
Sbjct: 57  GKLYTLILTDPDAPSRKKPVYREWHHFLVVNM-KGNDISSGNVLSDYVGSGPPKGTGLHR 115
Query: 119 YVFALFNQKGKV-----MAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRK 173
           YV+ ++ Q   +     +   R  D R  F T  F     L  PVA   + ++ +  V K
Sbjct: 116 YVWLVYQQDKPLRCDEPILTNRSGDHRGKFKTAAFRKKYHLGAPVAGTCYQAEWDSYVPK 175

>pdb|1WPX|B Chain B, Crystal Structure Of Carboxypeptidase Y Inhibitor Complexed With The Cognate Proteinase Length = 220

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 37/151 (24%)
Query: 13  VIGDVVD--MFTPATEMTVHYGTKQ-VANGCEIKPSASADKPSVQI-------------H 56
           ++ DV+    F P+  + V Y +   VA G  +    +  KP  Q              +
Sbjct: 21  ILEDVIHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQAN 80
Query: 57  APPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKE------------- 103
           A  P   +L+TLVM DPDAPS ++ ++ E+ H +  D+   ++AT E             
Sbjct: 81  AYVPQDDDLFTLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFN 140
Query: 104 ------LVAYMGPQPPTGI--HRYVFALFNQ 126
                 L+ YMGP PP G   HRYVF L+ Q
Sbjct: 141 TKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQ 171

>pdb|2R77|A Chain A, Crystal Structure Of Phosphatidylethanolamine-Binding Protein, Pfl0955c, From Plasmodium Falciparum Length = 205

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 34  KQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVD 93
           K+V +G  +  + +   P     +  P     + L MVDPD PS   P  +E++HW+V  
Sbjct: 54  KEVNHGNVLDIAGTGSVPRNIKFSEEPPDGYCFVLFMVDPDYPSRLRPDGKEYIHWVVSG 113
Query: 94  IPEGSDATKELVA-----------YMGP--QPPTGIHRYVFAL 123
           I      TKEL+            Y+GP  +  TG+HR  F +
Sbjct: 114 I-----KTKELIKGTQKNCVTILPYVGPSIKKGTGLHRISFII 151

>pdb|2GZQ|A Chain A, Phosphatidylethanolamine-Binding Protein From Plasmodium Vivax Length = 200

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 34  KQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVD 93
           K+V +G  +  + +   P     +  P     Y L  +DPD PS   P  R+++HW V  
Sbjct: 47  KEVNHGNILDLAGTGSVPRNIKFSEEPPEDYCYILFXIDPDFPSRRRPDGRDYVHWAVSG 106
Query: 94  IP-----EGSDATK-ELVAYMGP--QPPTGIHRYVFAL 123
           I      +G+D     L+ Y+GP  +  TG+HR  F L
Sbjct: 107 IKSKELVKGTDKNCITLLPYVGPSIKKGTGLHRISFIL 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
1wko_A	180	Terminal flower 1 protein; CIS-peptide, PEBP, sign	4e-66
3axy_A	170	Protein heading DATE 3A; phosphatidylethanolamine-	1e-63
2gzq_A	200	Phosphatidylethanolamine-binding protein; structur	1e-52
2jyz_A	179	CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular mo	3e-51
1wpx_B	220	Carboxypeptidase Y inhibitor; carboxypeptidase inh	2e-49
2iqy_A	190	Phosphatidylethanolamine-binding protein 1; alpha-	6e-43
3n08_A	153	Putative phosphatidylethanolamine-binding protein;	2e-14
2evv_A	207	Hypothetical protein HP0218; alpha-beta structure,	5e-10
1fux_A	166	Hypothetical 19.5 kDa protein in EMRE-RUS intergen	2e-09
1fjj_A	159	Hypothetical 17.1 kDa protein in MODC-BIOA interge	4e-07

>1wko_A Terminal flower 1 protein; CIS-peptide, PEBP, signaling protein; 1.80A {Arabidopsis thaliana} PDB: 1qou_A Length = 180

 Score =  199 bits (507), Expect = 4e-66
 Identities = 89/177 (50%), Positives = 121/177 (68%), Gaps = 6/177 (3%)

Query: 1   MA-RSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPP 59
           M  R +EPL++GRV+GDV+D FTP T+M V Y  KQV+NG E+ PS+ + KP V+IH   
Sbjct: 7   MGTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGD 66

Query: 60  PASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATK--ELVAYMGPQPPTGIH 117
               + +TLVM+DPD P PS+P  +E LHWIV +IP  +DAT   E+V+Y  P+P  GIH
Sbjct: 67  L--RSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIH 124

Query: 118 RYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           R+VF LF QK + +       +R +F+TR+FA +  L  PVAAV+FN+Q+E A RKR
Sbjct: 125 RFVFVLFRQKQRRV-IFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 180

>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein, 14-3-3 protein, BZ protein, floral induction; HET: SEP; 2.40A {Oryza sativa japonica group} PDB: 1wkp_A Length = 170

 Score =  192 bits (489), Expect = 1e-63
 Identities = 85/168 (50%), Positives = 110/168 (65%), Gaps = 6/168 (3%)

Query: 3   RSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPAS 62
           R  +PLVVGRV+GDV+D F  +T + V YG+K V+NG E+KPS    +P V++       
Sbjct: 6   RDRDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGLELKPSMVTHQPRVEVGGNDM-- 63

Query: 63  SNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHRYV 120
              YTLVMVDPDAPSPS+P  RE+LHW+V DIP  + A+  +E+++Y  P+P  GIHR V
Sbjct: 64  RTFYTLVMVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMGIHRLV 123

Query: 121 FALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKE 168
           F LF Q G+       P  R NF+T+ FA    L  PVAAVYFNSQ+E
Sbjct: 124 FVLFQQLGRQT--VYAPGWRQNFNTKDFAELYNLGSPVAAVYFNSQRE 169

>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI, protein structure initiative; HET: MSE; 1.30A {Plasmodium vivax} PDB: 2r77_A Length = 200

 Score =  165 bits (419), Expect = 1e-52
 Identities = 40/189 (21%), Positives = 73/189 (38%), Gaps = 24/189 (12%)

Query: 3   RSMEPLVVGRVIGDVV--DMFTPATEMTVHYGT-KQVANGCEIKPSASADKPSVQIHAPP 59
            ++E L   ++I  V   +      +M + + + K+V +G  +  + +   P     +  
Sbjct: 13  PTIEELKREKIIPHVFPDENVDLTVDMYISFKSGKEVNHGNILDLAGTGSVPRNIKFSEE 72

Query: 60  PASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT------KELVAYMGPQPP 113
           P     Y L M+DPD PS   P  R+++HW V  I               L+ Y+GP   
Sbjct: 73  PPEDYCYILFMIDPDFPSRRRPDGRDYVHWAVSGIKSKELVKGTDKNCITLLPYVGPSIK 132

Query: 114 --TGIHRYVFALFNQKGKV--------MAGCRPPDARSNFSTRRFAAD----NGLQPPVA 159
             TG+HR  F L   K +         +        R  F+  + A +    N ++  V 
Sbjct: 133 KGTGLHRISFILSLVKEENKGNVTGVPLYRGEHYITRVKFNNCQSAYNVIQMNDMK-IVG 191

Query: 160 AVYFNSQKE 168
             +   +++
Sbjct: 192 FNWCQMRRK 200

>2jyz_A CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular modeling, chemical shift variations, titration, unknown function; NMR {Drosophila melanogaster} Length = 179

 Score =  161 bits (408), Expect = 3e-51
 Identities = 66/175 (37%), Positives = 94/175 (53%), Gaps = 12/175 (6%)

Query: 10  VGRVIGDVVDMFTPATEMTVHYG-TKQVANGCEIKPSASADKPSVQIHAPPPASSNLYTL 68
           +  ++ DV+D   PA  + V YG   +V  G E+ P+   D+P V         SNL TL
Sbjct: 1   MDDIVPDVLDAV-PAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEG-KSNLLTL 58

Query: 69  VMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT---KELVAYMGP--QPPTGIHRYVFAL 123
           +MVDPDAP+  +P+YRE LHW VV+IP  ++       L  Y+G      TG+HRY+F L
Sbjct: 59  LMVDPDAPTRQDPKYREILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLL 118

Query: 124 FNQKGKVM----AGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
           + Q+ K+             R NF+ R FAA +GL  P+AA Y+ +Q +  V  R
Sbjct: 119 YRQENKIEETPTISNTTRTGRLNFNARDFAAKHGLGEPIAANYYQAQYDDYVPIR 173

>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine proteinase inhibitor, Pro inhibitor complex; HET: NAG NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1 Length = 220

 Score =  158 bits (400), Expect = 2e-49
 Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 46/210 (21%)

Query: 4   SMEPLVVGRVIGDVVD--MFTPATEMTVHYGTK-QVANGCEIKPSASADKPSVQIHA--- 57
           S++      ++ DV+    F P+  + V Y +   VA G  +    +  KP  Q      
Sbjct: 12  SIDSYKKHGILEDVIHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQ 71

Query: 58  ----------PPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT------ 101
                       P   +L+TLVM DPDAPS ++ ++ E+ H +  D+   ++AT      
Sbjct: 72  MQKSVPQANAYVPQDDDLFTLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGA 131

Query: 102 -------------KELVAYMGPQPP--TGIHRYVFALFNQKGKVMAGCRPP--------D 138
                          L+ YMGP PP  +G HRYVF L+ Q   V +              
Sbjct: 132 TEFFASEFNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGY 191

Query: 139 ARSNFSTRRFAADNGLQPPVAAVYFNSQKE 168
                   ++A +N LQ  VA+ +F ++ +
Sbjct: 192 GTPATGVGKWAKENNLQ-LVASNFFYAETK 220

>2iqy_A Phosphatidylethanolamine-binding protein 1; alpha-beta, hydrolase inhibitor; 1.40A {Rattus norvegicus} PDB: 2iqx_A 1b7a_A* 1a44_A 1beh_A 1bd9_A 2l7w_A 2qyq_A* 1kn3_A Length = 190

 Score =  140 bits (354), Expect = 6e-43
 Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 12/182 (6%)

Query: 1   MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVAN-GCEIKPSASADKPSVQIHAPP 59
           MA  +     G +    VD   P   + V YG   V   G  + P+   ++PS  I    
Sbjct: 4   MAADISQWA-GPLSLQEVD-EPPQHALRVDYGGVTVDELGKVLTPTQVMNRPSS-ISWDG 60

Query: 60  PASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGS-DATKELVAYMGPQPP--TGI 116
                LYTLV+ DPDAPS  +P++REW H++VV++      +   L  Y+G  PP  TG+
Sbjct: 61  LDPGKLYTLVLTDPDAPSRKDPKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGL 120

Query: 117 HRYVFALFNQKGKV-----MAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAV 171
           HRYV+ ++ Q+  +     +   +  D R  F    F     L  PVA   F ++ + +V
Sbjct: 121 HRYVWLVYEQEQPLNCDEPILSNKSGDNRGKFKVESFRKKYHLGAPVAGTCFQAEWDDSV 180

Query: 172 RK 173
            K
Sbjct: 181 PK 182

>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic homolog RAF kinase inhibitor protein (RKIP). csgid structural genomics; 1.25A {Chlamydia trachomatis} Length = 153

 Score = 65.8 bits (161), Expect = 2e-14
 Identities = 23/89 (25%), Positives = 31/89 (34%), Gaps = 18/89 (20%)

Query: 51  PSVQIHAPPP-ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKE------ 103
           P +     P  A S    L++ DPD P         W+HWIV ++        E      
Sbjct: 30  PPLSFSDVPREAKS--LVLIVEDPDVPPSVRED-GLWIHWIVYNLSPVVSNLAEGAQIFA 86

Query: 104 --------LVAYMGPQPPTGIHRYVFALF 124
                    + Y  P PP   HRY F  +
Sbjct: 87  VQGLNTAGEIGYCPPCPPDAKHRYYFYAY 115

>2evv_A Hypothetical protein HP0218; alpha-beta structure, dimer, structural genomics, PSI, prote structure initiative; HET: MSE; 2.59A {Helicobacter pylori} Length = 207

 Score = 55.4 bits (133), Expect = 5e-10
 Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 39/108 (36%)

Query: 51  PSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIP-------EGSDATKE 103
           P +       A S  Y L ++D DA          ++HW+V +I              + 
Sbjct: 61  PKISWQKVEGAQS--YALELIDHDAQKVCG---MPFVHWVVGNIAHNVLEENASMMDKRI 115

Query: 104 L---------------------------VAYMGPQPPTGIHRYVFALF 124
           +                             Y+GP PP G H Y+  ++
Sbjct: 116 VQGVNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPNGDHHYLIQVY 163

>1fux_A Hypothetical 19.5 kDa protein in EMRE-RUS intergenic region; beta protein, unknown function; 1.81A {Escherichia coli} SCOP: b.17.1.2 Length = 166

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 24/99 (24%), Positives = 34/99 (34%), Gaps = 32/99 (32%)

Query: 51  PSVQIHAPPP-ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDI-------PEGSDATK 102
           PS+     P    S  + + + DPDAP+ S      W HW VV+I       P  +    
Sbjct: 34  PSLTWSGVPEGTKS--FAVTVYDPDAPTGS-----GWWHWTVVNIPATVTYLPVDAGRRD 86

Query: 103 EL---------------VAYMGPQPPTG--IHRYVFALF 124
                              + G  PP G   H Y F ++
Sbjct: 87  GTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVW 125

>1fjj_A Hypothetical 17.1 kDa protein in MODC-BIOA intergenic region; PEPB family, lipid binding protein; HET: MSE EPE; 1.66A {Escherichia coli} SCOP: b.17.1.2 PDB: 1vi3_A* Length = 159

 Score = 46.4 bits (110), Expect = 4e-07
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 30/97 (30%)

Query: 51  PSVQIHAPPP-ASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDI-------PEGSDATK 102
           P +     P    S  + +   DPDAP+ S      W HW+VV++       P+G  +  
Sbjct: 33  PHLAWDDVPAGTKS--FVVTCYDPDAPTGSG-----WWHWVVVNLPADTRVLPQGFGSGL 85

Query: 103 ELV--------------AYMGPQPPTG-IHRYVFALF 124
             +               Y G  PP G  HRY+F + 
Sbjct: 86  VAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVH 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d1qoua_	164	b.17.1.1 (A:) Centroradialis protein Cen {Garden s	2e-56
d1a44a_	185	b.17.1.1 (A:) Phosphatidylethanolamine binding pro	1e-46
d1wpxb1	219	b.17.1.1 (B:501-719) Carboxypeptidase Y inhibitor	4e-42
d1fjja_	159	b.17.1.2 (A:) Hypothetical protein YbhB {Escherich	1e-09
d1fuxa_	165	b.17.1.2 (A:) Hypothetical protein YbcL {Escherich	2e-08

>d1qoua_ b.17.1.1 (A:) Centroradialis protein Cen {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 164

class: All beta proteins
fold: PEBP-like
superfamily: PEBP-like
family: Phosphatidylethanolamine binding protein
domain: Centroradialis protein Cen
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score =  172 bits (438), Expect = 2e-56
 Identities = 80/165 (48%), Positives = 102/165 (61%), Gaps = 9/165 (5%)

Query: 11  GRVIGDVVDMFTPATEMTVHYG----TKQVANGCEIKPSASADKPSVQIHAPPPASSNLY 66
           GRVIGDVVD FT   +M+V Y      K V NG E+ PSA    P V++H       + +
Sbjct: 1   GRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDM--RSFF 58

Query: 67  TLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHRYVFALF 124
           TL+M DPD P PS+P  RE LHWIV DIP  +D++  KE+V+Y  P+P  GIHR+VF LF
Sbjct: 59  TLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHRFVFLLF 118

Query: 125 NQKGKVMAGC-RPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKE 168
            QK +  A    P   R  F+TR+F  +N L  PVAAV+FN Q+E
Sbjct: 119 KQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRE 163

>d1a44a_ b.17.1.1 (A:) Phosphatidylethanolamine binding protein, PEBP {Cow (Bos taurus) [TaxId: 9913]} Length = 185

class: All beta proteins
fold: PEBP-like
superfamily: PEBP-like
family: Phosphatidylethanolamine binding protein
domain: Phosphatidylethanolamine binding protein, PEBP
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  148 bits (376), Expect = 1e-46
 Identities = 55/183 (30%), Positives = 88/183 (48%), Gaps = 18/183 (9%)

Query: 1   MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVAN-GCEIKPSASADKPSVQIHAPP 59
           +++   PL +  V         P   + V YG  +V   G  + P+   ++P+       
Sbjct: 4   LSKWSGPLSLQEVD------ERPQHPLQVKYGGAEVDELGKVLTPTQVKNRPTSITW-DG 56

Query: 60  PASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATK--ELVAYMGPQPP--TG 115
                LYTLV+ DPDAPS  +P+YREW H++VV++  G++ +    L  Y+G  PP  TG
Sbjct: 57  LDPGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMK-GNNISSGTVLSDYVGSGPPKGTG 115

Query: 116 IHRYVFALFNQKGKV-----MAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVA 170
           +HRYV+ ++ Q+G +     +   R  D R  F    F     L  PVA   + ++ +  
Sbjct: 116 LHRYVWLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDY 175

Query: 171 VRK 173
           V K
Sbjct: 176 VPK 178

>d1wpxb1 b.17.1.1 (B:501-719) Carboxypeptidase Y inhibitor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 219

class: All beta proteins
fold: PEBP-like
superfamily: PEBP-like
family: Phosphatidylethanolamine binding protein
domain: Carboxypeptidase Y inhibitor
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  138 bits (348), Expect = 4e-42
 Identities = 54/210 (25%), Positives = 87/210 (41%), Gaps = 46/210 (21%)

Query: 4   SMEPLVVGRVIGDVVD--MFTPATEMTVHYGT-KQVANGCEIKPSASADKPSVQIH---- 56
           S++      ++ DV+    F P+  + V Y +   VA G  +    +  KP  Q      
Sbjct: 11  SIDSYKKHGILEDVIHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQ 70

Query: 57  ---------APPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT------ 101
                    A  P   +L+TLVM DPDAPS ++ ++ E+ H +  D+   ++AT      
Sbjct: 71  MQKSVPQANAYVPQDDDLFTLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGA 130

Query: 102 -------------KELVAYMGPQPP--TGIHRYVFALFNQKGKVMAGCRPP--------D 138
                          L+ YMGP PP  +G HRYVF L+ Q   V +              
Sbjct: 131 TEFFASEFNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGY 190

Query: 139 ARSNFSTRRFAADNGLQPPVAAVYFNSQKE 168
                   ++A +N LQ  VA+ +F ++ +
Sbjct: 191 GTPATGVGKWAKENNLQ-LVASNFFYAETK 219

>d1fjja_ b.17.1.2 (A:) Hypothetical protein YbhB {Escherichia coli [TaxId: 562]} Length = 159

class: All beta proteins
fold: PEBP-like
superfamily: PEBP-like
family: Prokaryotic PEBP-like proteins
domain: Hypothetical protein YbhB
species: Escherichia coli [TaxId: 562]

 Score = 51.9 bits (124), Expect = 1e-09
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 27/88 (30%)

Query: 59  PPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIP-------EGSDATKEL------- 104
            PA +  + +   DPDAP+ S      W HW+VV++P       +G  +           
Sbjct: 40  VPAGTKSFVVTCYDPDAPTGSG-----WWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQ 94

Query: 105 -------VAYMGPQPPTG-IHRYVFALF 124
                    Y G  PP G  HRY+F + 
Sbjct: 95  TRTDFGKTGYDGAAPPKGETHRYIFTVH 122

>d1fuxa_ b.17.1.2 (A:) Hypothetical protein YbcL {Escherichia coli [TaxId: 562]} Length = 165

class: All beta proteins
fold: PEBP-like
superfamily: PEBP-like
family: Prokaryotic PEBP-like proteins
domain: Hypothetical protein YbcL
species: Escherichia coli [TaxId: 562]

 Score = 48.9 bits (116), Expect = 2e-08
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 29/90 (32%)

Query: 59  PPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIP-------EGSDATKELV------ 105
            P  +  + + + DPDAP+        W HW VV+IP         +             
Sbjct: 40  VPEGTKSFAVTVYDPDAPTG-----SGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAV 94

Query: 106 ---------AYMGPQPP--TGIHRYVFALF 124
                     + G  PP     H Y F ++
Sbjct: 95  QGRNDFGYAGFGGACPPKGDKPHHYQFKVW 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1qoua_	164	Centroradialis protein Cen {Garden snapdragon (Ant	100.0
d1wpxb1	219	Carboxypeptidase Y inhibitor {Baker's yeast (Sacch	100.0
d1a44a_	185	Phosphatidylethanolamine binding protein, PEBP {Co	100.0
d1fjja_	159	Hypothetical protein YbhB {Escherichia coli [TaxId	99.85
d1fuxa_	165	Hypothetical protein YbcL {Escherichia coli [TaxId	99.84

>d1qoua_ b.17.1.1 (A:) Centroradialis protein Cen {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All beta proteins
fold: PEBP-like
superfamily: PEBP-like
family: Phosphatidylethanolamine binding protein
domain: Centroradialis protein Cen
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=100.00  E-value=0  Score=289.76  Aligned_cols=157  Identities=51%  Similarity=0.862  Sum_probs=141.4

Q ss_pred             CCCCCCCCCCCCCCEEEEEEECC----EEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEE
Q ss_conf             98210358999998479999799----44049972398878998959984799999863289997899999999998514
Q 030636           11 GRVIGDVVDMFTPATEMTVHYGT----KQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREW   86 (174)
Q Consensus        11 ~~iipdvl~~f~P~~~L~V~f~~----~~v~~G~~l~~~~t~~~P~i~~~~~~~~~~~~ytlimiDpD~p~~~~~~~~~~   86 (174)
                      ++||||||+.|.|+..|.|.|++    ..|.+|+.|++++++.+|+|++.+.+.  +++|||+|+|||+|++.++++++|
T Consensus         1 ~~vipdvld~F~P~~~l~V~y~~~~~~~~V~~G~~l~~~~t~~~P~v~~~~~~~--~~~YtlvMvDpDap~~~~~~~~~~   78 (164)
T d1qoua_           1 GRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDM--RSFFTLIMTDPDVPGPSDPYLREH   78 (164)
T ss_dssp             CTTCTTTSCCCCCCSCEEEEECC---CEECCTTCBCCGGGSSSCCEEEECCCCT--TCEEEEEEEECSCSCSSSCTTCCE
T ss_pred             CCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCEECHHHHCCCCEEEEECCCC--CCEEEEEEECCCCCCCCCCCCCEE
T ss_conf             957776269977971799998997633584489895899925599889756898--846899998899899888761128


Q ss_pred             EEEEEEEECCCCCCC--CCEECCCCCCCCCCCCEEEEEEEEECCCCCCCC-CCCCCCCCCCHHHHHHHHCCCCCEEEEEE
Q ss_conf             789995117987788--540002389999989608999972188775789-99999999797899998399994489699
Q 030636           87 LHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHRYVFALFNQKGKVMAGC-RPPDARSNFSTRRFAADNGLQPPVAAVYF  163 (174)
Q Consensus        87 lHwl~~ni~~~~~~~--~~~~~Y~~P~P~~G~HRYvfll~~q~~~~~~~~-~~~~~R~~F~~~~f~~~~~L~~pva~~~f  163 (174)
                      ||||++||+......  +.+++|.+|.|++|+|||+|+||+|+....... .....|.+||+++|+++++|+.|||+|||
T Consensus        79 lHWlv~nip~~~~~~~~~~~~~Y~~P~P~tG~HRYvflLf~Q~~~~~~~~~~~~~~R~~F~~~~F~~~~~L~~Pva~n~F  158 (164)
T d1qoua_          79 LHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIHRFVFLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFF  158 (164)
T ss_dssp             EEEEEEEEETTSBGGGSEEEECCCCCCCCSSCEEEEEEEEECSSCC-------CCCSBTCCHHHHHHHTTCCSCSEEEEE
T ss_pred             EEEEEECCCCCCCCCCCCEECCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEE
T ss_conf             78999667887434688410216799899860589999997478765545898112589189999998199985357879


Q ss_pred             EEEECC
Q ss_conf             976378
Q 030636          164 NSQKEV  169 (174)
Q Consensus       164 ~~~~d~  169 (174)
                      +||+|+
T Consensus       159 ~~q~~~  164 (164)
T d1qoua_         159 NCQRET  164 (164)
T ss_dssp             EECCCC
T ss_pred             EEECCC
T ss_conf             962389

>d1wpxb1 b.17.1.1 (B:501-719) Carboxypeptidase Y inhibitor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PEBP-like
superfamily: PEBP-like
family: Phosphatidylethanolamine binding protein
domain: Carboxypeptidase Y inhibitor
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=278.16  Aligned_cols=165  Identities=32%  Similarity=0.561  Sum_probs=141.1

Q ss_pred             CCCCCCCCCCCCCCCCC--CCCCCEEEEEEECC-EEECCCCCCCCCCCCCCCEEEEECCC-------------CCCCCCE
Q ss_conf             33343103982103589--99998479999799-44049972398878998959984799-------------9998632
Q 030636            3 RSMEPLVVGRVIGDVVD--MFTPATEMTVHYGT-KQVANGCEIKPSASADKPSVQIHAPP-------------PASSNLY   66 (174)
Q Consensus         3 ~~~~~l~~~~iipdvl~--~f~P~~~L~V~f~~-~~v~~G~~l~~~~t~~~P~i~~~~~~-------------~~~~~~y   66 (174)
                      .++++|++++|||||++  .|.|+..|.|.|++ ..|.+|+.|++++++.+|+|+|....             ...+++|
T Consensus        10 ~~~~~~~~~~Iipdvl~~~~F~P~~~L~V~y~~~~~V~~G~~l~p~~t~~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~y   89 (219)
T d1wpxb1          10 ASIDSYKKHGILEDVIHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDLF   89 (219)
T ss_dssp             HHHHHHHHTTHHHHTSCCTTCCCSEEEEEEEETTEEECSSCBCCGGGGSSCCEEEEEEETTCC------CCCCCCSSCCE
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEECHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             99998874697775578878788578999989996858898949899164887999457665455543334557889769


Q ss_pred             EEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCC-------------------CCCEECCCCCCCC--CCCCEEEEEEEE
Q ss_conf             8999789999999999851478999511798778-------------------8540002389999--989608999972
Q 030636           67 TLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDA-------------------TKELVAYMGPQPP--TGIHRYVFALFN  125 (174)
Q Consensus        67 tlimiDpD~p~~~~~~~~~~lHwl~~ni~~~~~~-------------------~~~~~~Y~~P~P~--~G~HRYvfll~~  125 (174)
                      ||+|+|||+|+++++++++|||||++||+.+...                   ...+++|.||+|+  +|+|||+|+||+
T Consensus        90 tlvm~DPDaP~~~~~~~~~~~HWlv~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~gP~Pp~gtg~HRYvf~l~~  169 (219)
T d1wpxb1          90 TLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYK  169 (219)
T ss_dssp             EEEEEESSSSCSSCCTTCSEEEEEEEEEEECC---------CCEEEEEEECTTCEEEECCCCCCCCTTSCCEEEEEEEEE
T ss_pred             EEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEEE
T ss_conf             99998999999878875408999996677665444556676666765411458813444569999789974379999997


Q ss_pred             ECCCCCCCC--------CCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEEC
Q ss_conf             188775789--------9999999979789999839999448969997637
Q 030636          126 QKGKVMAGC--------RPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKE  168 (174)
Q Consensus       126 q~~~~~~~~--------~~~~~R~~F~~~~f~~~~~L~~pva~~~f~~~~d  168 (174)
                      |+..++...        .....|.+||+++|+++++|+ |||+|||++|+.
T Consensus       170 Q~~~~~~~~~~~~~~~~~~~~~R~~F~~~~F~~~~~L~-pVa~n~F~~q~~  219 (219)
T d1wpxb1         170 QPKGVDSSKFSKIKDRPNWGYGTPATGVGKWAKENNLQ-LVASNFFYAETK  219 (219)
T ss_dssp             CCTTCCGGGSCCCCCSBGGGCCSSSCSHHHHHHTTTCE-EEEEEEEEECCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCE-EEEEEEEEEECC
T ss_conf             36777753233434465565466788999999985998-989999998439

>d1a44a_ b.17.1.1 (A:) Phosphatidylethanolamine binding protein, PEBP {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PEBP-like
superfamily: PEBP-like
family: Phosphatidylethanolamine binding protein
domain: Phosphatidylethanolamine binding protein, PEBP
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=0  Score=272.14  Aligned_cols=152  Identities=34%  Similarity=0.655  Sum_probs=135.0

Q ss_pred             CCCCCEEEEEEECCEE-ECCCCCCCCCCCCCCCE-EEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEECCC
Q ss_conf             9999847999979944-04997239887899895-998479999986328999789999999999851478999511798
Q 030636           20 MFTPATEMTVHYGTKQ-VANGCEIKPSASADKPS-VQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEG   97 (174)
Q Consensus        20 ~f~P~~~L~V~f~~~~-v~~G~~l~~~~t~~~P~-i~~~~~~~~~~~~ytlimiDpD~p~~~~~~~~~~lHwl~~ni~~~   97 (174)
                      ++.|+..|+|+|++.. +.+|+.|++++++.+|+ +.|++.+.  +++|||+|+|||+|+++++++++||||+++||+++
T Consensus        17 d~~P~~~L~V~y~~~~~v~~G~~l~p~~~~~~P~~v~~~~~~~--~~~YtlvMvDPDaPs~~~~~~~e~lHWlv~Ni~~~   94 (185)
T d1a44a_          17 DERPQHPLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDP--GKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMKGN   94 (185)
T ss_dssp             SCCCSEECEEEETTEEECSTTEECCTTTTSSCCSEEECTTCCT--TSEEEEEEEETTSSCSSSCTTCCEEEEEEEEEETT
T ss_pred             CCCCCCEEEEEECCCEECCCCCEECHHHHHCCCCEEEECCCCC--CCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCC
T ss_conf             6489855999989955647998988899712896698257799--98699999889999987887234999999677788


Q ss_pred             CCCC-CCEECCCCCCCC--CCCCEEEEEEEEECCCCCCCC-----CCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEECC
Q ss_conf             7788-540002389999--989608999972188775789-----99999999797899998399994489699976378
Q 030636           98 SDAT-KELVAYMGPQPP--TGIHRYVFALFNQKGKVMAGC-----RPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEV  169 (174)
Q Consensus        98 ~~~~-~~~~~Y~~P~P~--~G~HRYvfll~~q~~~~~~~~-----~~~~~R~~F~~~~f~~~~~L~~pva~~~f~~~~d~  169 (174)
                      .... +.+++|++|.|+  +|+|||+|+||+|++++.+..     .....|.+||+++|+++++|+.|||+|||+++||+
T Consensus        95 ~~~~g~~l~~Y~~P~Pp~gtg~HRYvflLf~Q~~~~~~~~~~~~~~~~~~R~~f~~~~F~~~~~L~~Pva~nfF~~~~D~  174 (185)
T d1a44a_          95 NISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDD  174 (185)
T ss_dssp             CGGGSEEEECCCCCCCCTTSCCEEEEEEEEECSSCCCCCCCCBCTTCCTTCTTCCHHHHHHHTTCCSCSEEEEEEECCCT
T ss_pred             CCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEECCC
T ss_conf             67888184037457689998866899999971688786643357778234678789999998299997089999986273


Q ss_pred             CCCC
Q ss_conf             6778
Q 030636          170 AVRK  173 (174)
Q Consensus       170 ~~~~  173 (174)
                      +|++
T Consensus       175 ~V~~  178 (185)
T d1a44a_         175 YVPK  178 (185)
T ss_dssp             THHH
T ss_pred             HHHH
T ss_conf             7899

>d1fjja_ b.17.1.2 (A:) Hypothetical protein YbhB {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PEBP-like
superfamily: PEBP-like
family: Prokaryotic PEBP-like proteins
domain: Hypothetical protein YbhB
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=7.2e-21  Score=118.98  Aligned_cols=95  Identities=25%  Similarity=0.594  Sum_probs=74.8

Q ss_pred             CEEECCCCCCCCCCCC---------CCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCC--
Q ss_conf             9440499723988789---------98959984799999863289997899999999998514789995117987788--
Q 030636           33 TKQVANGCEIKPSASA---------DKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--  101 (174)
Q Consensus        33 ~~~v~~G~~l~~~~t~---------~~P~i~~~~~~~~~~~~ytlimiDpD~p~~~~~~~~~~lHwl~~ni~~~~~~~--  101 (174)
                      +..+.+|..|+...+.         .+|.|+|++.+.++++ |+|+|.|+|+|...     .|+||+++||++.....  
T Consensus         6 S~~f~~g~~iP~~~t~~~~~~~G~n~SP~l~w~~~P~~tks-~ali~~D~dap~~~-----~~~HW~~~nIp~~~~~l~~   79 (159)
T d1fjja_           6 SNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKS-FVVTCYDPDAPTGS-----GWWHWVVVNLPADTRVLPQ   79 (159)
T ss_dssp             CSSCCTTSBCCGGGBCSSTTCCCCCCCCCEEEECCCTTCCE-EEEEEEETTSTTTT-----CEEEEEEEEEETTCCEECT
T ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCEE-EEEEEECCCCCCCC-----CCEEEEEECCCCCCCCCCC
T ss_conf             87657938789888267878888762822886489988759-99999799988887-----7149999816887542566


Q ss_pred             -------------------CCEECCCCCCCCCC-CCEEEEEEEEEC-CCCCCC
Q ss_conf             -------------------54000238999998-960899997218-877578
Q 030636          102 -------------------KELVAYMGPQPPTG-IHRYVFALFNQK-GKVMAG  133 (174)
Q Consensus       102 -------------------~~~~~Y~~P~P~~G-~HRYvfll~~q~-~~~~~~  133 (174)
                                         .....|.||+|+.| +|||+|.||+.. +.+.+.
T Consensus        80 g~~~~~~~~~~g~~~g~n~~g~~~Y~gPcPP~g~~H~Y~f~vyALd~~~l~l~  132 (159)
T d1fjja_          80 GFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDIERIDVD  132 (159)
T ss_dssp             TGGGTSSCCCTTCEECBCTTSSBSCCCBCCSTTCCEEEEEEEEEESSSCCSCC
T ss_pred             CCCCCCCCCCCCCEEECCCCCCCCEECCCCCCCCCEEEEEEEEEECCCCCCCC
T ss_conf             65676555788637731168875562898868996789999999558557899

>d1fuxa_ b.17.1.2 (A:) Hypothetical protein YbcL {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PEBP-like
superfamily: PEBP-like
family: Prokaryotic PEBP-like proteins
domain: Hypothetical protein YbcL
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.6e-20  Score=117.27  Aligned_cols=94  Identities=27%  Similarity=0.566  Sum_probs=72.6

Q ss_pred             CEEECCCCCCCCCCC---------CCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCC--
Q ss_conf             944049972398878---------998959984799999863289997899999999998514789995117987788--
Q 030636           33 TKQVANGCEIKPSAS---------ADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--  101 (174)
Q Consensus        33 ~~~v~~G~~l~~~~t---------~~~P~i~~~~~~~~~~~~ytlimiDpD~p~~~~~~~~~~lHwl~~ni~~~~~~~--  101 (174)
                      +..+..|..|+...+         ..+|.|+|++.+.++.+ |+|+|+|+|+|..     ..|+||+++||+.+....  
T Consensus         6 S~~f~~g~~ip~~~~~~~~tc~G~n~SP~L~w~~~P~gtks-~ali~~D~Dap~~-----~~~~HWlv~nIp~~~~~l~~   79 (165)
T d1fuxa_           6 SNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKS-FAVTVYDPDAPTG-----SGWWHWTVVNIPATVTYLPV   79 (165)
T ss_dssp             CSSCCTTSBCCGGGBCEETTEECCCCCCCEEEECCCTTCCE-EEEEEEETTSTTT-----TCEEEEEEEEEETTCCEECT
T ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCEE-EEEEEECCCCCCC-----CCCEEEEEECCCCCCCCCCC
T ss_conf             57747929989767245888778750831770589988718-9999738988888-----76338999816843232556


Q ss_pred             --------------------CCEECCCCCCCCC--CCCEEEEEEEEECC-CCCC
Q ss_conf             --------------------5400023899999--89608999972188-7757
Q 030636          102 --------------------KELVAYMGPQPPT--GIHRYVFALFNQKG-KVMA  132 (174)
Q Consensus       102 --------------------~~~~~Y~~P~P~~--G~HRYvfll~~q~~-~~~~  132 (174)
                                          .....|.||+|+.  |+|||+|.||+... .+.+
T Consensus        80 ~~~~~~~~~~~~g~~~g~n~~g~~~Y~gP~PP~G~~~H~Y~f~vyAL~~~~l~l  133 (165)
T d1fuxa_          80 DAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKIPV  133 (165)
T ss_dssp             TTTCTTCTTSCTTCEECCCTTSSSSCCCBCCCTTCCCEECEEEEEEESCSCCCC
T ss_pred             CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCC
T ss_conf             767655555788738833667875777888967998688999999857755788