Citrus Sinensis ID: 030644

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MLRLGSKRLLRQATAAAVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASEAELPPRAADV
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHccccHHHcccccHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEEccccHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHcHHHHcccccccHHHHHHHHcHHHHHccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEEEcccccHHHccHHHHHHHccccHHHHHHHHcHHHHHHHcccccEEEHHHHHHHHHHHHHHHHHHHcccccHHHHHHccHHHccc
Coil and Loop (DISEMBL)
MLRLGSKRLLRQATAAavaaprpvqvaamprlyhenvidhynnprnvgsfekndatvgtglvgapacgdvmkLQIKVDEETGQIVDACFKtfgcgsaiasssVATEWVKGKQMQEVLSIKNTEiakhlslppvklHCSMLAEDAIKAAVKDYEakrtkpsaaseaelppraadv
Flexible Loop (DISEMBL)
MLRLGSKRLLRQAtaaavaaprpvqVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKrtkpsaaseaelppraadv
Low Complexity Region (SEG)
MLRLGSKRLLrqataaavaaprpvqvaamprLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASEAELPPRAADV
Disordered region (IsUnstruct)
****************AVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAV*************************
Disordered Region (DISOPRED)
************************QVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKD***********************
Disordered Region (DISEMBL)
MLRLGSKRLLRQATAAAVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVK************************
Disordered Region (DISPRO)
MLRLGSKRLLRQATAAAVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLRLGSKRLLRQATAAAVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASEAELPPRAADV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
O49627	167	Iron-sulfur cluster assem	yes	no	0.896	0.934	0.733	2e-65
O81433	171	Iron-sulfur cluster assem	no	no	0.856	0.871	0.712	3e-59
Q9D7P6	168	Iron-sulfur cluster assem	yes	no	0.867	0.898	0.694	7e-56
Q9H1K1	167	Iron-sulfur cluster assem	yes	no	0.867	0.904	0.694	1e-55
Q6BGU0	179	Iron sulfur cluster assem	yes	no	0.919	0.893	0.644	4e-55
Q9MAB6	163	Iron-sulfur cluster assem	no	no	0.902	0.963	0.670	2e-53
Q6CRQ9	180	Iron sulfur cluster assem	yes	no	0.724	0.7	0.746	9e-52
Q6CFQ0	181	Iron sulfur cluster assem	yes	no	0.816	0.784	0.657	2e-50
Q03020	165	Iron sulfur cluster assem	yes	no	0.844	0.890	0.636	5e-50
Q75C07	154	Iron sulfur cluster assem	yes	no	0.827	0.935	0.655	1e-49

>sp|O49627|ISU1_ARATH Iron-sulfur cluster assembly protein 1 OS=Arabidopsis thaliana GN=ISU1 PE=2 SV=1

 Score =  248 bits (632), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 124/169 (73%), Positives = 139/169 (82%), Gaps = 13/169 (7%)

Query: 1   MLRLGSKRLL----RQATAAAVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDAT 56
           ML+  +K+ L    RQ+T  +V          + R YHENVIDHY+NPRNVGSF+KND  
Sbjct: 2   MLKQAAKKALGLTSRQSTPWSVG---------ILRTYHENVIDHYDNPRNVGSFDKNDPN 52

Query: 57  VGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEV 116
           VGTGLVGAPACGDVMKLQIKVDE+TGQIVDA FKTFGCGSAIASSSVATEWVKGK M++V
Sbjct: 53  VGTGLVGAPACGDVMKLQIKVDEKTGQIVDARFKTFGCGSAIASSSVATEWVKGKAMEDV 112

Query: 117 LSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASEA 165
           L+IKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY+ KR K + A+ A
Sbjct: 113 LTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYKEKRVKTNGAAAA 161

Involved in iron homeostasis within the mitochondrion where it is involved in the assembly of iron-sulfur proteins. Essential for de novo biosynthesis of mitochondrial iron sulfur proteins. Involved in the assembly or repair of the [Fe-S] clusters present in iron-sulfur proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|O81433|ISU3_ARATH Iron-sulfur cluster assembly protein 3 OS=Arabidopsis thaliana GN=ISU3 PE=2 SV=1

 Score =  227 bits (578), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/153 (71%), Positives = 128/153 (83%), Gaps = 4/153 (2%)

Query: 9   LLRQATAAA---VAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAP 65
           +LRQ T  A   +A+  P     + RLYH NVIDHY+NPRNVGSF+KND  VGTGLVGAP
Sbjct: 1   MLRQTTKRAFLGLASQNPTPFPVVSRLYHPNVIDHYDNPRNVGSFDKNDPNVGTGLVGAP 60

Query: 66  ACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIA 125
            CGDVMKLQ+K D  +GQI+DA FKTFGCGSAIA+SSVATEWVKGK ++EVL+IKN++IA
Sbjct: 61  QCGDVMKLQVKFDG-SGQIIDAKFKTFGCGSAIAASSVATEWVKGKSVEEVLTIKNSQIA 119

Query: 126 KHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTK 158
           KHLSLPPVKLHCSMLAEDAIKAA+K+Y+ K+ K
Sbjct: 120 KHLSLPPVKLHCSMLAEDAIKAAIKNYKEKQDK 152

Involved in iron homeostasis within the mitochondrion where it is involved in the assembly of iron-sulfur proteins. Essential for de novo biosynthesis of mitochondrial iron sulfur proteins. Involved in the assembly or repair of the [Fe-S] clusters present in iron-sulfur proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9D7P6|ISCU_MOUSE Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Mus musculus GN=Iscu PE=1 SV=1

 Score =  216 bits (549), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 107/154 (69%), Positives = 127/154 (82%), Gaps = 3/154 (1%)

Query: 5   GSKRLLRQATAAAVAAPR-PVQVAAMP-RLYHENVIDHYNNPRNVGSFEKNDATVGTGLV 62
           G+ RL R A+A  + +PR P +  + P RLYH+ V+DHY NPRNVGS +K    VGTGLV
Sbjct: 6   GAGRLRRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVGTGLV 65

Query: 63  GAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNT 122
           GAPACGDVMKLQI+VDE+ G+IVDA FKTFGCGSAIASSS+ATEWVKGK ++E L+IKNT
Sbjct: 66  GAPACGDVMKLQIQVDEK-GKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNT 124

Query: 123 EIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 156
           +IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K+
Sbjct: 125 DIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQ 158

Involved in the assembly or repair of [Fe-S] clusters that are present in iron-sulfur proteins. Binds iron.

Mus musculus (taxid: 10090)

>sp|Q9H1K1|ISCU_HUMAN Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo sapiens GN=ISCU PE=1 SV=2

 Score =  215 bits (548), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 107/154 (69%), Positives = 127/154 (82%), Gaps = 3/154 (1%)

Query: 5   GSKRLLRQATAAAVAAPR-PVQVAAMP-RLYHENVIDHYNNPRNVGSFEKNDATVGTGLV 62
           G+ RL R A+A  + +PR P +  + P RLYH+ V+DHY NPRNVGS +K    VGTGLV
Sbjct: 5   GAFRLRRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVGTGLV 64

Query: 63  GAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNT 122
           GAPACGDVMKLQI+VDE+ G+IVDA FKTFGCGSAIASSS+ATEWVKGK ++E L+IKNT
Sbjct: 65  GAPACGDVMKLQIQVDEK-GKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNT 123

Query: 123 EIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 156
           +IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K+
Sbjct: 124 DIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQ 157

Involved in the assembly or repair of the [Fe-S] clusters present in iron-sulfur proteins. Binds iron.

Homo sapiens (taxid: 9606)

>sp|Q6BGU0|ISU1_DEBHA Iron sulfur cluster assembly protein 1, mitochondrial OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ISU1 PE=3 SV=1

 Score =  213 bits (543), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 109/169 (64%), Positives = 125/169 (73%), Gaps = 9/169 (5%)

Query: 6   SKRLLRQATAAAVAAPRPVQVAAMP-------RLYHENVIDHYNNPRNVGSFEKNDATVG 58
           S+  LR A  A  A P   +V  MP       RLYHE V+DHY+NPRNVG+  K D  VG
Sbjct: 3   SRSFLRLANPARRAMPAVKRVNMMPSMALPTKRLYHEKVLDHYSNPRNVGTLNKLDVDVG 62

Query: 59  TGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLS 118
           TGLVGAPACGDVM+LQI+VD+ETG I D  FKTFGCGSAIASSS  TE VKGK ++E + 
Sbjct: 63  TGLVGAPACGDVMRLQIQVDDETGVIKDVKFKTFGCGSAIASSSYLTELVKGKTIEEAVK 122

Query: 119 IKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRT--KPSAASEA 165
           IKNT IAK LSLPPVKLHCSMLAEDAIK+AVKDY +KR+  +P+   EA
Sbjct: 123 IKNTAIAKELSLPPVKLHCSMLAEDAIKSAVKDYRSKRSVKQPTLGPEA 171

Involved in iron homeostasis within the mitochondrion where it is involved in the assembly of iron-sulfur proteins. Essential for de novo biosynthesis of mitochondrial and cytoplasmic iron sulfur proteins. May also be involved in the repair of iron sulfur clusters.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q9MAB6|ISU2_ARATH Iron-sulfur cluster assembly protein 2 OS=Arabidopsis thaliana GN=ISU2 PE=2 SV=1

 Score =  208 bits (529), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/158 (67%), Positives = 127/158 (80%), Gaps = 1/158 (0%)

Query: 9   LLRQATAAAVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACG 68
           +LRQ +  A    +   +    RLYHENVIDH+ NPRNVGSF +ND  VGTGLVGAPACG
Sbjct: 3   MLRQTSRKAYLGLQASPLGLGRRLYHENVIDHFENPRNVGSFNRNDPNVGTGLVGAPACG 62

Query: 69  DVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHL 128
           D+M LQIKVD+ +GQI+D  FKTFGCGSAIASSSVA+EW+KGK + EV++IKN EIAKHL
Sbjct: 63  DLMSLQIKVDD-SGQIIDTRFKTFGCGSAIASSSVASEWIKGKTLDEVMTIKNAEIAKHL 121

Query: 129 SLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASEAE 166
            LPPVKLHCSMLAEDAIK+AV+DY+ K+ K +AA+  E
Sbjct: 122 RLPPVKLHCSMLAEDAIKSAVRDYKEKQAKTNAAAAEE 159

Involved in iron homeostasis within the mitochondrion where it is involved in the assembly of iron-sulfur proteins. Essential for de novo biosynthesis of mitochondrial iron sulfur proteins. Involved in the assembly or repair of the [Fe-S] clusters present in iron-sulfur proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6CRQ9|ISU1_KLULA Iron sulfur cluster assembly protein 1, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ISU1 PE=3 SV=1

 Score =  202 bits (514), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 94/126 (74%), Positives = 106/126 (84%)

Query: 31  RLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFK 90
           R YH  VIDHY NPRNVGS +KN   VGTGLVGAPACGDVMKLQI+V++ETG I +  FK
Sbjct: 49  RFYHPKVIDHYTNPRNVGSLDKNLPNVGTGLVGAPACGDVMKLQIQVNDETGVIENVKFK 108

Query: 91  TFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVK 150
           TFGCGSAIASSS  TE V+GK +++   IKNTEIA+ LSLPPVKLHCSMLAEDAIKAA+K
Sbjct: 109 TFGCGSAIASSSYMTELVRGKTLEDAAKIKNTEIARELSLPPVKLHCSMLAEDAIKAAIK 168

Query: 151 DYEAKR 156
           DY+AKR
Sbjct: 169 DYQAKR 174

Involved in iron homeostasis within the mitochondrion where it is involved in the assembly of iron-sulfur proteins. Essential for de novo biosynthesis of mitochondrial and cytoplasmic iron sulfur proteins. May also be involved in the repair of iron sulfur clusters.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q6CFQ0|ISU1_YARLI Iron sulfur cluster assembly protein 1, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ISU1 PE=3 SV=1

 Score =  198 bits (503), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/152 (65%), Positives = 110/152 (72%), Gaps = 10/152 (6%)

Query: 14  TAAAVAAPRPVQVAAMP---------RLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGA 64
           +A  +A  RP   A M          R YHE V+DHYNNPRNVGS  KND  VGTGLVGA
Sbjct: 9   SAGLLARARPTTTAVMSPMTPLAISRRGYHEKVLDHYNNPRNVGSMNKNDEDVGTGLVGA 68

Query: 65  PACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEI 124
           PACGDVMKLQI+VD+  G I D  FKTFGCGSAIASSS  TE V+GK + E   IKNT I
Sbjct: 69  PACGDVMKLQIRVDDN-GVIQDVKFKTFGCGSAIASSSYVTELVRGKSLAEAGKIKNTVI 127

Query: 125 AKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 156
           AK LSLPPVKLHCSMLAEDAIK+A+ DY +KR
Sbjct: 128 AKELSLPPVKLHCSMLAEDAIKSAISDYNSKR 159

Involved in iron homeostasis within the mitochondrion where it is involved in the assembly of iron-sulfur proteins. Essential for de novo biosynthesis of mitochondrial and cytoplasmic iron sulfur proteins. May also be involved in the repair of iron sulfur clusters.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q03020|ISU1_YEAST Iron sulfur cluster assembly protein 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISU1 PE=1 SV=1

 Score =  196 bits (499), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 98/154 (63%), Positives = 113/154 (73%), Gaps = 7/154 (4%)

Query: 17  AVAAPRPVQVAAM-------PRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGD 69
           A+ A RPV    +        RLYH  VI+HY +PRNVGS +K    VGTGLVGAPACGD
Sbjct: 12  ALMAIRPVNAMGVLRASSITKRLYHPKVIEHYTHPRNVGSLDKKLPNVGTGLVGAPACGD 71

Query: 70  VMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLS 129
           VM+LQIKV++ TG I D  FKTFGCGSAIASSS  TE V+G  + +   IKNTEIAK LS
Sbjct: 72  VMRLQIKVNDSTGVIEDVKFKTFGCGSAIASSSYMTELVQGMTLDDAAKIKNTEIAKELS 131

Query: 130 LPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAAS 163
           LPPVKLHCSMLAEDAIKAA+KDY++KR  P+  S
Sbjct: 132 LPPVKLHCSMLAEDAIKAAIKDYKSKRNTPTMLS 165

Involved in iron homeostasis within the mitochondrion where it is involved in the assembly of iron-sulfur proteins. Essential for de novo biosynthesis of mitochondrial and cytoplasmic iron sulfur proteins. May also be involved in the repair of iron sulfur clusters.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q75C07|ISU1_ASHGO Iron sulfur cluster assembly protein 1, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ISU1 PE=3 SV=1

 Score =  195 bits (496), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/148 (65%), Positives = 110/148 (74%), Gaps = 4/148 (2%)

Query: 10  LRQATAAAVAAPRPV-QVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACG 68
            RQ   A V   RPV  +    R YH  VIDHY NPRNVG+ +K    VGTGLVGAPACG
Sbjct: 4   FRQTATAIV---RPVGTIGYARRCYHPKVIDHYTNPRNVGTLDKKLTNVGTGLVGAPACG 60

Query: 69  DVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHL 128
           DVM+LQI+VD+ TG I +  FKTFGCGSAIASSS  TE V+GK + +   IKNTEIA+ L
Sbjct: 61  DVMRLQIQVDDSTGVIENVKFKTFGCGSAIASSSYMTELVRGKTLADAEKIKNTEIAREL 120

Query: 129 SLPPVKLHCSMLAEDAIKAAVKDYEAKR 156
           SLPPVKLHCSMLAEDAIKAA+KDY +KR
Sbjct: 121 SLPPVKLHCSMLAEDAIKAAIKDYRSKR 148

Involved in iron homeostasis within the mitochondrion where it is involved in the assembly of iron-sulfur proteins. Essential for de novo biosynthesis of mitochondrial and cytoplasmic iron sulfur proteins. May also be involved in the repair of iron sulfur clusters.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
255540651	166	nitrogen fixation protein nifu, putative	0.954	1.0	0.775	3e-71
305855380	166	iron-sulfur cluster scaffold protein [He	0.902	0.945	0.8	2e-70
356516670	172	PREDICTED: iron-sulfur cluster assembly	0.959	0.970	0.745	3e-68
351726321	165	uncharacterized protein LOC100526856 [Gl	0.896	0.945	0.769	1e-67
356513449	165	PREDICTED: iron-sulfur cluster assembly	0.896	0.945	0.775	2e-67
449469541	170	PREDICTED: iron-sulfur cluster assembly	0.925	0.947	0.769	2e-67
224121706	163	predicted protein [Populus trichocarpa]	0.919	0.981	0.745	9e-67
225425565	155	PREDICTED: iron sulfur cluster assembly	0.879	0.987	0.784	2e-66
356548367	172	PREDICTED: iron-sulfur cluster assembly	0.965	0.976	0.724	4e-66
209484089	173	iron-sulfer cluster scaffold protein ISU	0.821	0.826	0.853	5e-66

>gi|255540651|ref|XP_002511390.1| nitrogen fixation protein nifu, putative [Ricinus communis] gi|223550505|gb|EEF51992.1| nitrogen fixation protein nifu, putative [Ricinus communis]

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 135/174 (77%), Positives = 150/174 (86%), Gaps = 8/174 (4%)

Query: 1   MLRLGSKRLLRQATAAAVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTG 60
           MLRL SKRLL Q +      PRPVQ+  + R YHENVIDH+NNPRNVGSF+KND  VGTG
Sbjct: 1   MLRLVSKRLLGQVS------PRPVQI--LQRCYHENVIDHFNNPRNVGSFDKNDPAVGTG 52

Query: 61  LVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIK 120
           LVGAPACGDVMKLQIKVDE+TG+IVDA FKTFGCGSAIASSSVATEWVKGKQM+EVL+IK
Sbjct: 53  LVGAPACGDVMKLQIKVDEKTGEIVDARFKTFGCGSAIASSSVATEWVKGKQMEEVLTIK 112

Query: 121 NTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASEAELPPRAADV 174
           NTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY+ KR K + +S+A    +AA+V
Sbjct: 113 NTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYQTKREKLNGSSDAASAEQAAEV 166

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|305855380|gb|ADM67612.1| iron-sulfur cluster scaffold protein [Hevea brasiliensis]

 Score =  270 bits (689), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 132/165 (80%), Positives = 143/165 (86%), Gaps = 8/165 (4%)

Query: 1   MLRLGSKRLLRQATAAAVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTG 60
           MLRL SKRLL QA       PRP Q+  + R YHENVIDH+NNPRNVGSF+KND TVGTG
Sbjct: 1   MLRLASKRLLGQA------PPRPAQI--LSRFYHENVIDHFNNPRNVGSFDKNDPTVGTG 52

Query: 61  LVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIK 120
           LVGAPACGDVMKLQIKVDE+TG+IVDA FKTFGCGSAIASSSVATEWVKGKQM+EVL+IK
Sbjct: 53  LVGAPACGDVMKLQIKVDEKTGEIVDARFKTFGCGSAIASSSVATEWVKGKQMEEVLTIK 112

Query: 121 NTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASEA 165
           NTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY+ KR K +   +A
Sbjct: 113 NTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYQTKRAKVNGTPDA 157

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516670|ref|XP_003527016.1| PREDICTED: iron-sulfur cluster assembly enzyme ISCU, mitochondrial-like [Glycine max]

 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 129/173 (74%), Positives = 149/173 (86%), Gaps = 6/173 (3%)

Query: 1   MLRLGS--KRLLRQATAAAVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVG 58
           MLR+ +  KR+++ A+   + AP P+ +  +PRLYHE V+DHY+NPRNVGSF+KND TVG
Sbjct: 1   MLRIAASAKRIVQTAS---LEAP-PLGIRVLPRLYHERVVDHYDNPRNVGSFDKNDPTVG 56

Query: 59  TGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLS 118
           TGLVGAPACGDVMKLQIKVD++TG+IVDA FKTFGCGSAIASSSVATEWVKGKQM+EVL+
Sbjct: 57  TGLVGAPACGDVMKLQIKVDDKTGKIVDARFKTFGCGSAIASSSVATEWVKGKQMEEVLT 116

Query: 119 IKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASEAELPPRA 171
           IKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR   SA  +A    +A
Sbjct: 117 IKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRASASAGGQATTGEKA 169

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726321|ref|NP_001235075.1| uncharacterized protein LOC100526856 [Glycine max] gi|255630998|gb|ACU15863.1| unknown [Glycine max]

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/165 (76%), Positives = 143/165 (86%), Gaps = 9/165 (5%)

Query: 1   MLRLGSKRLLRQATAAAVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTG 60
           MLR+G+KR+L + T   V  P         RLYHE V+DHY+NPRNVGSF+KND +VGTG
Sbjct: 1   MLRVGAKRVL-ETTLFGVRVP--------ARLYHERVVDHYDNPRNVGSFDKNDPSVGTG 51

Query: 61  LVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIK 120
           LVGAPACGDVMKLQIKVD++TG+IVDA FKTFGCGSAIASSSVATEWVKG+QM+EVL+IK
Sbjct: 52  LVGAPACGDVMKLQIKVDDKTGKIVDARFKTFGCGSAIASSSVATEWVKGRQMEEVLTIK 111

Query: 121 NTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASEA 165
           NTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR K +A+ EA
Sbjct: 112 NTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKATASGEA 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513449|ref|XP_003525426.1| PREDICTED: iron-sulfur cluster assembly enzyme ISCU, mitochondrial-like [Glycine max]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 128/165 (77%), Positives = 142/165 (86%), Gaps = 9/165 (5%)

Query: 1   MLRLGSKRLLRQATAAAVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTG 60
           MLR+G+KRLL   T+  V  P         RLYHE V+DHY+NPRNVGS +KND +VGTG
Sbjct: 1   MLRVGAKRLL-GTTSLGVRVP--------ARLYHERVVDHYDNPRNVGSLDKNDPSVGTG 51

Query: 61  LVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIK 120
           LVGAPACGDVMKLQIKVD++TG+IVDA FKTFGCGSAIASSSVATEWVKGKQM+EVL+IK
Sbjct: 52  LVGAPACGDVMKLQIKVDDKTGKIVDARFKTFGCGSAIASSSVATEWVKGKQMEEVLTIK 111

Query: 121 NTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASEA 165
           NTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR K +A+ EA
Sbjct: 112 NTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKATASGEA 156

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469541|ref|XP_004152478.1| PREDICTED: iron-sulfur cluster assembly protein 1-like [Cucumis sativus] gi|449520487|ref|XP_004167265.1| PREDICTED: iron-sulfur cluster assembly protein 1-like [Cucumis sativus]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 127/165 (76%), Positives = 140/165 (84%), Gaps = 4/165 (2%)

Query: 1   MLRLGSKRLLRQATAAAVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTG 60
           MLR  SKRLL  A+      P P  V  +PR YHE VIDHYNNPRNVGSF+KND TVGTG
Sbjct: 1   MLRFSSKRLLGIASKDL---PSPA-VQIVPRFYHERVIDHYNNPRNVGSFDKNDPTVGTG 56

Query: 61  LVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIK 120
           LVGAPACGDVMKLQIK+DE+TG++VDACFKTFGCGSAIASSS+ATE VKGKQM E L+IK
Sbjct: 57  LVGAPACGDVMKLQIKIDEKTGKVVDACFKTFGCGSAIASSSLATEMVKGKQMDEALTIK 116

Query: 121 NTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASEA 165
           N+EIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR K +  +E+
Sbjct: 117 NSEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAKLANGAES 161

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121706|ref|XP_002318652.1| predicted protein [Populus trichocarpa] gi|118485453|gb|ABK94583.1| unknown [Populus trichocarpa] gi|222859325|gb|EEE96872.1| predicted protein [Populus trichocarpa]

 Score =  258 bits (658), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 129/173 (74%), Positives = 142/173 (82%), Gaps = 13/173 (7%)

Query: 1   MLR-LGSKRLLRQATAAAVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGT 59
           MLR L SKRL  Q T          Q+  +PR YHE VIDH+NNPRNVGSF+K D TVGT
Sbjct: 1   MLRQLASKRLFSQRT----------QI--LPRFYHEKVIDHFNNPRNVGSFDKTDPTVGT 48

Query: 60  GLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSI 119
           GLVGAPACGDVMKLQIKVD+ TG+I+DA FKTFGCGSAIASSSVATEWVKGKQM+EV++I
Sbjct: 49  GLVGAPACGDVMKLQIKVDDTTGEIIDARFKTFGCGSAIASSSVATEWVKGKQMEEVMTI 108

Query: 120 KNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASEAELPPRAA 172
           KNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY+ KR K +  SEAE   +AA
Sbjct: 109 KNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYQTKRAKSNVDSEAEPAVQAA 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425565|ref|XP_002265909.1| PREDICTED: iron sulfur cluster assembly protein 1, mitochondrial [Vitis vinifera]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/158 (78%), Positives = 133/158 (84%), Gaps = 5/158 (3%)

Query: 1   MLRLGSKRLLRQATAAAVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTG 60
           MLR G  R+L           +  Q  A+ R YHE V+DHYNNPRNVGSF+KND  VGTG
Sbjct: 1   MLRSGCSRILGLGQQG-----KQAQSQALLRFYHERVVDHYNNPRNVGSFDKNDPDVGTG 55

Query: 61  LVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIK 120
           LVGAPACGDVMKLQIKVD++TG+IVDACFKTFGCGSAIASSSVATEWVKGKQ +EVLSIK
Sbjct: 56  LVGAPACGDVMKLQIKVDDQTGKIVDACFKTFGCGSAIASSSVATEWVKGKQTEEVLSIK 115

Query: 121 NTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTK 158
           NTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR K
Sbjct: 116 NTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRAK 153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548367|ref|XP_003542574.1| PREDICTED: iron-sulfur cluster assembly enzyme ISCU, mitochondrial-like [Glycine max]

 Score =  255 bits (652), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 126/174 (72%), Positives = 146/174 (83%), Gaps = 6/174 (3%)

Query: 1   MLRLGS--KRLLRQATAAAVAAPRPVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVG 58
           MLR+ +  K ++R  +   + AP P+ +  +PRLYHE V+DHY+NPRNVGSF+KND TVG
Sbjct: 1   MLRIAASAKTIVRTGS---LEAP-PLGIRVLPRLYHERVVDHYDNPRNVGSFDKNDPTVG 56

Query: 59  TGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLS 118
           TGLVGAPACGDVMKLQIKVD++TG+IVDA FKTFGCGSAIASSSVATEWVK KQ++EVL+
Sbjct: 57  TGLVGAPACGDVMKLQIKVDDKTGKIVDARFKTFGCGSAIASSSVATEWVKEKQIEEVLT 116

Query: 119 IKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASEAELPPRAA 172
           IKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR   SA  +     +AA
Sbjct: 117 IKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRASASAGGQTTTGEKAA 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209484089|gb|ACI47519.1| iron-sulfer cluster scaffold protein ISU1 [Eucalyptus grandis]

 Score =  255 bits (651), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 122/143 (85%), Positives = 130/143 (90%)

Query: 23  PVQVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETG 82
           P +V    RLYHE V+DHYNNPRNVGSF+KND  VGTGLVGAPACGDVMKLQIKVDEETG
Sbjct: 19  PARVVPPLRLYHERVVDHYNNPRNVGSFDKNDPAVGTGLVGAPACGDVMKLQIKVDEETG 78

Query: 83  QIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAE 142
           +IVDA FKTFGCGSAIASSSVATEWVKGKQM+EVLSIKNTEIAKHLSLPPVKLHCSMLAE
Sbjct: 79  KIVDARFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAE 138

Query: 143 DAIKAAVKDYEAKRTKPSAASEA 165
           DAIKAAVKDYEAKR K   +S++
Sbjct: 139 DAIKAAVKDYEAKRAKLDGSSDS 161

Source: Eucalyptus grandis

Species: Eucalyptus grandis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2132090	167	ISU1 [Arabidopsis thaliana (ta	0.764	0.796	0.864	1.5e-58
TAIR|locus:2102122	163	ISU2 "ISCU-like 2" [Arabidopsi	0.770	0.822	0.748	4.4e-52
TAIR|locus:2136612	171	ISU3 "ISCU-like 3" [Arabidopsi	0.724	0.736	0.795	9.2e-52
FB|FBgn0037637	154	CG9836 [Drosophila melanogaste	0.741	0.837	0.769	9.5e-50
UNIPROTKB|Q17QE6	167	ISCU "Uncharacterized protein"	0.758	0.790	0.740	1.4e-48
UNIPROTKB|E2R2U4	167	ISCU "Uncharacterized protein"	0.758	0.790	0.740	1.8e-48
UNIPROTKB|Q9H1K1	167	ISCU "Iron-sulfur cluster asse	0.758	0.790	0.740	1.8e-48
RGD|1309562	167	Iscu "iron-sulfur cluster scaf	0.729	0.760	0.75	2.3e-48
CGD|CAL0003195	187	ISU1 [Candida albicans (taxid:	0.764	0.711	0.736	2.9e-48
UNIPROTKB|Q5AGZ0	187	ISU1 "Likely mitochondrial iro	0.764	0.711	0.736	2.9e-48

TAIR|locus:2132090 ISU1 [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 115/133 (86%), Positives = 124/133 (93%)

Query:    33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
             YHENVIDHY+NPRNVGSF+KND  VGTGLVGAPACGDVMKLQIKVDE+TGQIVDA FKTF
Sbjct:    29 YHENVIDHYDNPRNVGSFDKNDPNVGTGLVGAPACGDVMKLQIKVDEKTGQIVDARFKTF 88

Query:    93 GCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY 152
             GCGSAIASSSVATEWVKGK M++VL+IKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY
Sbjct:    89 GCGSAIASSSVATEWVKGKAMEDVLTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY 148

Query:   153 EAKRTKPSAASEA 165
             + KR K + A+ A
Sbjct:   149 KEKRVKTNGAAAA 161

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;IGI;ISS

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2102122 ISU2 "ISCU-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 101/135 (74%), Positives = 118/135 (87%)

Query:    32 LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
             LYHENVIDH+ NPRNVGSF +ND  VGTGLVGAPACGD+M LQIKVD+ +GQI+D  FKT
Sbjct:    26 LYHENVIDHFENPRNVGSFNRNDPNVGTGLVGAPACGDLMSLQIKVDD-SGQIIDTRFKT 84

Query:    92 FGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKD 151
             FGCGSAIASSSVA+EW+KGK + EV++IKN EIAKHL LPPVKLHCSMLAEDAIK+AV+D
Sbjct:    85 FGCGSAIASSSVASEWIKGKTLDEVMTIKNAEIAKHLRLPPVKLHCSMLAEDAIKSAVRD 144

Query:   152 YEAKRTKPSAASEAE 166
             Y+ K+ K +AA+  E
Sbjct:   145 YKEKQAKTNAAAAEE 159

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;IGI;ISS

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2136612 ISU3 "ISCU-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 101/127 (79%), Positives = 116/127 (91%)

Query:    32 LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
             LYH NVIDHY+NPRNVGSF+KND  VGTGLVGAP CGDVMKLQ+K D  +GQI+DA FKT
Sbjct:    27 LYHPNVIDHYDNPRNVGSFDKNDPNVGTGLVGAPQCGDVMKLQVKFDG-SGQIIDAKFKT 85

Query:    92 FGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKD 151
             FGCGSAIA+SSVATEWVKGK ++EVL+IKN++IAKHLSLPPVKLHCSMLAEDAIKAA+K+
Sbjct:    86 FGCGSAIAASSVATEWVKGKSVEEVLTIKNSQIAKHLSLPPVKLHCSMLAEDAIKAAIKN 145

Query:   152 YEAKRTK 158
             Y+ K+ K
Sbjct:   146 YKEKQDK 152

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;IGI;ISS

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

FB|FBgn0037637 CG9836 [Drosophila melanogaster (taxid:7227)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 100/130 (76%), Positives = 111/130 (85%)

Query:    32 LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
             LYHENV++HY NPRNVGS +K D TVGTGLVGAPACGDVMKLQIKVDE  G+IVDA FKT
Sbjct:    25 LYHENVVEHYENPRNVGSLDKKDVTVGTGLVGAPACGDVMKLQIKVDEN-GKIVDAKFKT 83

Query:    92 FGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKD 151
             FGCGSAIASSS+ATEWVKGK + E   +KNT+IAK L LPPVKLHCSMLAEDAIKAA+ D
Sbjct:    84 FGCGSAIASSSLATEWVKGKSIDEAGKLKNTDIAKELRLPPVKLHCSMLAEDAIKAALAD 143

Query:   152 YEAKRTKPSA 161
             Y+ K+ K  A
Sbjct:   144 YKVKQQKKVA 153

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|Q17QE6 ISCU "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 100/135 (74%), Positives = 115/135 (85%)

Query:    32 LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
             LYH+ V+DHY NPRNVGS +K    VGTGLVGAPACGDVMKLQI+VDE+ G+IVDA FKT
Sbjct:    34 LYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEK-GKIVDARFKT 92

Query:    92 FGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKD 151
             FGCGSAIASSS+ATEWVKGK ++E L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ D
Sbjct:    93 FGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALAD 152

Query:   152 YEAKRTKPSAASEAE 166
             Y+ K+ +P    EAE
Sbjct:   153 YKLKQ-EPKTG-EAE 165

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|E2R2U4 ISCU "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 100/135 (74%), Positives = 115/135 (85%)

Query:    32 LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
             LYH+ V+DHY NPRNVGS +K    VGTGLVGAPACGDVMKLQI+VDE+ G+IVDA FKT
Sbjct:    34 LYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEK-GKIVDARFKT 92

Query:    92 FGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKD 151
             FGCGSAIASSS+ATEWVKGK ++E L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ D
Sbjct:    93 FGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALAD 152

Query:   152 YEAKRTKPSAASEAE 166
             Y+ K+ +P    EAE
Sbjct:   153 YKLKQ-EPKK-EEAE 165

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|Q9H1K1 ISCU "Iron-sulfur cluster assembly enzyme ISCU, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 100/135 (74%), Positives = 115/135 (85%)

Query:    32 LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
             LYH+ V+DHY NPRNVGS +K    VGTGLVGAPACGDVMKLQI+VDE+ G+IVDA FKT
Sbjct:    34 LYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEK-GKIVDARFKT 92

Query:    92 FGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKD 151
             FGCGSAIASSS+ATEWVKGK ++E L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ D
Sbjct:    93 FGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALAD 152

Query:   152 YEAKRTKPSAASEAE 166
             Y+ K+ +P    EAE
Sbjct:   153 YKLKQ-EPKKG-EAE 165

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0009399 "nitrogen fixation" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005506 "iron ion binding" evidence=TAS

GO:0016226 "iron-sulfur cluster assembly" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=TAS

GO:0032947 "protein complex scaffold" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

RGD|1309562 Iscu "iron-sulfur cluster scaffold homolog (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 99/132 (75%), Positives = 113/132 (85%)

Query:    32 LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
             LYH+ V+DHY NPRNVGS +K    VGTGLVGAPACGDVMKLQI+VDE+ G+IVDA FKT
Sbjct:    34 LYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEK-GKIVDARFKT 92

Query:    92 FGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKD 151
             FGCGSAIASSS+ATEWVKGK ++E L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ D
Sbjct:    93 FGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALAD 152

Query:   152 Y----EAKRTKP 159
             Y    EAK+ +P
Sbjct:   153 YKLKQEAKKDEP 164

GO:0005506 "iron ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA;ISO

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

CGD|CAL0003195 ISU1 [Candida albicans (taxid:5476)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 98/133 (73%), Positives = 109/133 (81%)

Query:    33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
             YHE VIDHY NPRNVGS  K  + VGTGLVGAPACGDVM+LQI+VDEETG+I D  FKTF
Sbjct:    36 YHEKVIDHYENPRNVGSLNKESSDVGTGLVGAPACGDVMRLQIQVDEETGKIKDVKFKTF 95

Query:    93 GCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY 152
             GCGSAIASSS ATE ++GK + E L IKNT IAK LSLPPVKLHCSMLAEDAIKAAVKDY
Sbjct:    96 GCGSAIASSSYATELIRGKTLDEALDIKNTLIAKELSLPPVKLHCSMLAEDAIKAAVKDY 155

Query:   153 EAKRTKPSAASEA 165
             ++KR   +  + A
Sbjct:   156 QSKRKTTTLGATA 168

GO:0016226 "iron-sulfur cluster assembly" evidence=NAS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0002098 "tRNA wobble uridine modification" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

UNIPROTKB|Q5AGZ0 ISU1 "Likely mitochondrial iron-sulfur cluster assembly scaffold protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 98/133 (73%), Positives = 109/133 (81%)

Query:    33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
             YHE VIDHY NPRNVGS  K  + VGTGLVGAPACGDVM+LQI+VDEETG+I D  FKTF
Sbjct:    36 YHEKVIDHYENPRNVGSLNKESSDVGTGLVGAPACGDVMRLQIQVDEETGKIKDVKFKTF 95

Query:    93 GCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY 152
             GCGSAIASSS ATE ++GK + E L IKNT IAK LSLPPVKLHCSMLAEDAIKAAVKDY
Sbjct:    96 GCGSAIASSSYATELIRGKTLDEALDIKNTLIAKELSLPPVKLHCSMLAEDAIKAAVKDY 155

Query:   153 EAKRTKPSAASEA 165
             ++KR   +  + A
Sbjct:   156 QSKRKTTTLGATA 168

GO:0016226 "iron-sulfur cluster assembly" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9H1K1	ISCU_HUMAN	No assigned EC number	0.6948	0.8678	0.9041	yes	no
O81433	ISU3_ARATH	No assigned EC number	0.7124	0.8563	0.8713	no	no
Q6CFQ0	ISU1_YARLI	No assigned EC number	0.6578	0.8160	0.7845	yes	no
Q9UTC6	ISU1_SCHPO	No assigned EC number	0.6744	0.7356	0.6666	yes	no
O51885	NIFU_BUCAP	No assigned EC number	0.6904	0.7183	0.9765	yes	no
P57658	NIFU_BUCAI	No assigned EC number	0.7096	0.7068	0.9685	yes	no
Q9ZD61	NIFU_RICPR	No assigned EC number	0.728	0.7011	0.9312	yes	no
Q89A18	NIFU_BUCBP	No assigned EC number	0.7096	0.7068	0.9761	yes	no
Q9D7P6	ISCU_MOUSE	No assigned EC number	0.6948	0.8678	0.8988	yes	no
O49627	ISU1_ARATH	No assigned EC number	0.7337	0.8965	0.9341	yes	no
Q6FJY3	ISU1_CANGA	No assigned EC number	0.7086	0.7298	0.5962	yes	no
Q57074	NIFU_HAEIN	No assigned EC number	0.7096	0.7068	0.9761	yes	no
B0YLW7	ISU1_TRAHO	No assigned EC number	0.7096	0.7011	0.8840	N/A	no
Q03020	ISU1_YEAST	No assigned EC number	0.6363	0.8448	0.8909	yes	no
Q6CRQ9	ISU1_KLULA	No assigned EC number	0.7460	0.7241	0.7	yes	no
Q6BGU0	ISU1_DEBHA	No assigned EC number	0.6449	0.9195	0.8938	yes	no
Q8SSM2	ISU1_ENCCU	No assigned EC number	0.6397	0.7701	0.9571	yes	no
Q75C07	ISU1_ASHGO	No assigned EC number	0.6554	0.8275	0.9350	yes	no
P0ACD6	NIFU_ECO57	No assigned EC number	0.7258	0.7068	0.9609	N/A	no
P0ACD7	NIFU_SHIFL	No assigned EC number	0.7258	0.7068	0.9609	yes	no
P0ACD4	NIFU_ECOLI	No assigned EC number	0.7258	0.7068	0.9609	N/A	no
P0ACD5	NIFU_ECOL6	No assigned EC number	0.7258	0.7068	0.9609	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_XII0286	SubName- Full=Putative uncharacterized protein; (163 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_VII0255	cysteine desulfurase/transaminase (EC-2.8.1.7) (452 aa)	•		•	•	•		•		0.986
	gw1.IX.3183.1	selenocysteine lyase/cysteine desulfurase (EC-2.8.1.7) (468 aa)	•				•		•		0.909
	fgenesh4_pg.C_LG_IV000050	hypothetical protein (554 aa)	•						•		0.866
	gw1.598.1.1	hypothetical protein (210 aa)	•		•	•	•		•		0.852
	eugene3.00080101	white-brown-complex ABC transporter family (328 aa)	•						•		0.756
	grail3.0008039502	hypothetical protein (354 aa)							•		0.686
	Lil3_2	light harvesting-like protein 3 (259 aa)							•		0.686
	eugene3.00280238	SubName- Full=Putative uncharacterized protein; (252 aa)							•		0.686
	gdcP1	precursor of carboxylase p-protein 1, glycine decarboxylase complex (EC-1.4.4.2) (1061 aa)							•		0.686
	estExt_fgenesh4_pg.C_LG_XIV1291	SubName- Full=Putative uncharacterized protein; (108 aa)							•		0.686

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
PRK11325	127	PRK11325, PRK11325, scaffold protein; Provisional	3e-82
TIGR01999	124	TIGR01999, iscU, FeS cluster assembly scaffold Isc	2e-78
pfam01592	126	pfam01592, NifU_N, NifU-like N terminal domain	5e-67
COG0822	150	COG0822, IscU, NifU homolog involved in Fe-S clust	3e-49
TIGR03419	121	TIGR03419, NifU_clost, FeS cluster assembly scaffo	8e-48
cd06664	123	cd06664, IscU_like, Iron-sulfur cluster scaffold-l	2e-46
TIGR02000	290	TIGR02000, NifU_proper, Fe-S cluster assembly prot	3e-37
TIGR01994	137	TIGR01994, SUF_scaf_2, SUF system FeS assembly pro	1e-14

>gnl|CDD|183087 PRK11325, PRK11325, scaffold protein; Provisional

 Score =  238 bits (609), Expect = 3e-82
 Identities = 93/126 (73%), Positives = 110/126 (87%), Gaps = 1/126 (0%)

Query: 33  YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
           Y E VIDHY NPRNVGSF+KND  VGTG+VGAPACGDVMKLQIKV++E G I DA FKT+
Sbjct: 3   YSEKVIDHYENPRNVGSFDKNDPNVGTGMVGAPACGDVMKLQIKVNDE-GIIEDAKFKTY 61

Query: 93  GCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY 152
           GCGSAIASSS+ TEWVKGK + E L+IKNT+IA+ L+LPPVK+HCS+LAEDAIKAA+ DY
Sbjct: 62  GCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAEELALPPVKIHCSILAEDAIKAAIADY 121

Query: 153 EAKRTK 158
           ++K+ K
Sbjct: 122 KSKQAK 127

Length = 127

>gnl|CDD|188192 TIGR01999, iscU, FeS cluster assembly scaffold IscU

 Score =  229 bits (585), Expect = 2e-78
 Identities = 95/124 (76%), Positives = 109/124 (87%), Gaps = 1/124 (0%)

Query: 33  YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
           Y E VIDHY NPRNVGS +K+D  VGTGLVGAPACGDVMKLQIKV+++ G I DA FKTF
Sbjct: 1   YSEKVIDHYENPRNVGSLDKDDKNVGTGLVGAPACGDVMKLQIKVNDD-GIIEDAKFKTF 59

Query: 93  GCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY 152
           GCGSAIASSS+ATE +KGK ++E L IKNTEIAK LSLPPVKLHCS+LAEDAIKAA+KDY
Sbjct: 60  GCGSAIASSSLATELIKGKSLEEALKIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIKDY 119

Query: 153 EAKR 156
           ++K+
Sbjct: 120 KSKQ 123

This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 124

>gnl|CDD|216592 pfam01592, NifU_N, NifU-like N terminal domain

 Score =  199 bits (509), Expect = 5e-67
 Identities = 78/129 (60%), Positives = 95/129 (73%), Gaps = 4/129 (3%)

Query: 32  LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
            Y + V+DH+ NPRNVG  E+ DA    G VG+PACGD M+LQIKVDE+T +I DA FKT
Sbjct: 1   DYSDKVLDHFKNPRNVGVLEEADAV---GDVGSPACGDAMRLQIKVDEDTDRIEDAKFKT 57

Query: 92  FGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVK 150
           FGCGSAIASSS  TE VKGK + E L I NT+IA+ L  LPPVK+HCS+L +DA+KAA+ 
Sbjct: 58  FGCGSAIASSSALTELVKGKTLDEALKITNTDIAEELGGLPPVKMHCSVLGDDALKAAIA 117

Query: 151 DYEAKRTKP 159
           DY+ K    
Sbjct: 118 DYKGKNLCA 126

This domain is found in NifU in combination with pfam01106. This domain is found on isolated in several bacterial species. The nif genes are responsible for nitrogen fixation. However this domain is found in bacteria that do not fix nitrogen, so it may have a broader significance in the cell than nitrogen fixation. These proteins appear to be scaffold proteins for iron-sulfur clusters. Length = 126

>gnl|CDD|223892 COG0822, IscU, NifU homolog involved in Fe-S cluster formation [Energy production and conversion]

 Score =  155 bits (394), Expect = 3e-49
 Identities = 71/145 (48%), Positives = 88/145 (60%), Gaps = 23/145 (15%)

Query: 31  RLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFK 90
            LY E ++DHY NPRNVG  +  D  VG   VGAPACGDV+ L +KVD   G I DA FK
Sbjct: 5   DLYSEKILDHYKNPRNVGVLDDADVGVGH--VGAPACGDVITLYLKVDN--GVIEDAKFK 60

Query: 91  TFGCGSAIASSSVATEWVKGKQMQEVLSIK--NTEIAKHL-----------------SLP 131
            FGC  +IASSS+ TE VKGK + E L I    T++AK L                 +LP
Sbjct: 61  GFGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAKELGGDPDDRLGDLVALAGVALP 120

Query: 132 PVKLHCSMLAEDAIKAAVKDYEAKR 156
           P ++ CS+LA DA+KAA+KDY+ K 
Sbjct: 121 PARIKCSLLAWDALKAAIKDYKGKA 145

Length = 150

>gnl|CDD|132460 TIGR03419, NifU_clost, FeS cluster assembly scaffold protein NifU, Clostridium type

 Score =  151 bits (382), Expect = 8e-48
 Identities = 67/125 (53%), Positives = 86/125 (68%), Gaps = 6/125 (4%)

Query: 33  YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
           Y E V+DH+ NPRNVG  E  D   G G VG P CGD+MK+ +KV++    I D  FKTF
Sbjct: 1   YSEKVMDHFMNPRNVGEIENAD---GVGEVGNPKCGDIMKIFLKVED--DIIKDVKFKTF 55

Query: 93  GCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKD 151
           GCG+AIASSS+ATE +KGK ++E   + N  +A+ L  LPPVK+HCS+LAE+AI  A+ D
Sbjct: 56  GCGAAIASSSMATEMIKGKTLEEAWELTNKAVAEALDGLPPVKMHCSVLAEEAIHKAIND 115

Query: 152 YEAKR 156
           Y  K 
Sbjct: 116 YREKN 120

NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 121

>gnl|CDD|143480 cd06664, IscU_like, Iron-sulfur cluster scaffold-like proteins

 Score =  147 bits (374), Expect = 2e-46
 Identities = 59/128 (46%), Positives = 80/128 (62%), Gaps = 16/128 (12%)

Query: 32  LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
           LY E ++DHY NPRNVG  E  D   GTG VG P CGD + L +KV++  G+I DA F+ 
Sbjct: 1   LYSEIILDHYRNPRNVGRLEDAD---GTGEVGNPLCGDEITLYLKVED--GRITDAKFQG 55

Query: 92  FGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAK-----------HLSLPPVKLHCSML 140
           FGC  +IAS+S+ TE +KGK + E L + N +IA             + LPP ++HC++L
Sbjct: 56  FGCAISIASASLLTELIKGKTLDEALKLLNKDIAMLDGKEELAALAGVGLPPARIHCALL 115

Query: 141 AEDAIKAA 148
           A  A+KAA
Sbjct: 116 AWKALKAA 123

IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy. Length = 123

>gnl|CDD|233679 TIGR02000, NifU_proper, Fe-S cluster assembly protein NifU

 Score =  129 bits (325), Expect = 3e-37
 Identities = 58/121 (47%), Positives = 85/121 (70%), Gaps = 4/121 (3%)

Query: 33  YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
           Y + V +H+ NP+N G  E  +A    G VG+ +CGD ++L +KVD E+ +IVDA F+TF
Sbjct: 4   YTDKVKEHFYNPKNAGVVEDANAV---GEVGSISCGDALRLMLKVDPESDKIVDAGFQTF 60

Query: 93  GCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKD 151
           GCGSAIASSS  TE +KG  + E L + N +IA +L  LPP K+HCS++ ++A++AA+ +
Sbjct: 61  GCGSAIASSSALTEMIKGLTLDEALKVSNQDIADYLGGLPPEKMHCSVMGQEALEAAIAN 120

Query: 152 Y 152
           Y
Sbjct: 121 Y 121

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation]. Length = 290

>gnl|CDD|233676 TIGR01994, SUF_scaf_2, SUF system FeS assembly protein, NifU family

 Score = 67.0 bits (164), Expect = 1e-14
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 5/88 (5%)

Query: 32  LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
           LY + ++DHY NPR+ G  E  DATV       P CGD + L +K++    +I D  F+ 
Sbjct: 4   LYRQVILDHYKNPRHRGKLE--DATVQERGHN-PTCGDEITLTVKLE--GDRIEDIAFEG 58

Query: 92  FGCGSAIASSSVATEWVKGKQMQEVLSI 119
            GC  + AS+S+ TE +KGK ++E LS+
Sbjct: 59  EGCSISQASASMMTELIKGKTVEEALSL 86

Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
PRK11325	127	scaffold protein; Provisional	100.0
TIGR01999	124	iscU FeS cluster assembly scaffold IscU. This mode	100.0
TIGR03419	121	NifU_clost FeS cluster assembly scaffold protein N	100.0
COG0822	150	IscU NifU homolog involved in Fe-S cluster formati	100.0
PF01592	126	NifU_N: NifU-like N terminal domain; InterPro: IPR	100.0
TIGR01994	137	SUF_scaf_2 SUF system FeS assembly protein, NifU f	100.0
cd06664	123	IscU_like Iron-sulfur cluster scaffold-like protei	100.0
KOG3361	157	consensus Iron binding protein involved in Fe-S cl	100.0
TIGR02000	290	NifU_proper Fe-S cluster assembly protein NifU. Th	100.0
PF02657	125	SufE: Fe-S metabolism associated domain; InterPro:	93.53
PRK15019	147	CsdA-binding activator; Provisional	90.16
PRK09296	138	cysteine desufuration protein SufE; Provisional	89.36
TIGR03391	138	FeS_syn_CsdE cysteine desulfurase, sulfur acceptor	88.32
PLN02673	724	quinolinate synthetase A	86.02
TIGR01038	150	L22_arch ribosomal protein L22(archaeal)/L17(eukar	84.29
PF12637	95	TSCPD: TSCPD domain; InterPro: IPR024434 The domai	83.33
PTZ00178	181	60S ribosomal protein L17; Provisional	83.2
PRK04223	153	rpl22p 50S ribosomal protein L22P; Reviewed	82.53
COG2166	144	sufE Cysteine desulfurase SufE subunit [Posttransl	81.7

>PRK11325 scaffold protein; Provisional

Probab=100.00  E-value=1.7e-39  Score=248.80  Aligned_cols=125  Identities=74%  Similarity=1.198  Sum_probs=117.0

Q ss_pred             hHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHcCC
Q 030644           32 LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGK  111 (174)
Q Consensus        32 lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~GK  111 (174)
                      +|+++||+||.||+|.|.+++++...+.+..+||+|||+|+|||+|+++ |+|+|++|+++||++++||+|+|+++++||
T Consensus         2 ~Y~~~il~h~~~P~n~G~l~~~~~~~~~~~~~np~CGD~i~l~l~v~~~-~~I~d~~f~~~GC~is~Asas~~~e~~~Gk   80 (127)
T PRK11325          2 AYSEKVIDHYENPRNVGSFDKNDPNVGTGMVGAPACGDVMKLQIKVNDE-GIIEDAKFKTYGCGSAIASSSLVTEWVKGK   80 (127)
T ss_pred             ccHHHHHHHHhCcCCCCCCCCCccccceEEecCCCCccEEEEEEEECCC-CeEEEEEEEeeCCHHHHHHHHHHHHHHcCC
Confidence            6999999999999999999998754456678999999999999999732 899999999999999999999999999999


Q ss_pred             CHHHHHhhhHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHhcC
Q 030644          112 QMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRT  157 (174)
Q Consensus       112 tl~ea~~i~~~~i~e~L~~~~~R~~CA~L~~~AL~~AL~~~~~~~~  157 (174)
                      |++|+..|+.+++.+.||+|++|++|++|+|+||++++++|..++.
T Consensus        81 tl~ea~~i~~~~i~~~lg~p~~r~~CA~la~~al~~a~~~y~~~~~  126 (127)
T PRK11325         81 TLDEALAIKNTDIAEELALPPVKIHCSILAEDAIKAAIADYKSKQA  126 (127)
T ss_pred             CHHHHHhcCHHHHHHHcCCCcccchHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999987764

>TIGR01999 iscU FeS cluster assembly scaffold IscU

Probab=100.00  E-value=4.4e-39  Score=245.39  Aligned_cols=123  Identities=76%  Similarity=1.192  Sum_probs=115.7

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHcCCC
Q 030644           33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQ  112 (174)
Q Consensus        33 Y~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~GKt  112 (174)
                      |+++|++||.||+|.|.+++++..++.|+.+||+|||.|+|||+|+++ ++|+|++|+++||++++||+|+|+++++|||
T Consensus         1 Y~~~il~~~~~p~n~G~l~~~~~~~~~~~~~np~CGD~i~l~l~v~~~-~~I~d~~f~~~GC~~s~Asas~~~e~i~Gkt   79 (124)
T TIGR01999         1 YSEKVLDHYENPRNVGSLDKDDKNVGTGLVGAPACGDVMKLQIKVNDD-GIIEDAKFKTFGCGSAIASSSLATELIKGKS   79 (124)
T ss_pred             CcHHHHHHHhCCCCCCCCCCCccccceEEeCCCCCccEEEEEEEECCC-CeEEEEEEEecCcHHHHHHHHHHHHHHcCCC
Confidence            899999999999999999998754456778999999999999999754 7999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHhc
Q 030644          113 MQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR  156 (174)
Q Consensus       113 l~ea~~i~~~~i~e~L~~~~~R~~CA~L~~~AL~~AL~~~~~~~  156 (174)
                      ++|+..|+.+++.+.||+||+|+||++|+|+||++|+.+|..++
T Consensus        80 l~ea~~i~~~~i~~~lg~p~~r~~CA~l~~~al~~a~~~y~~~~  123 (124)
T TIGR01999        80 LEEALKIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIKDYKSKQ  123 (124)
T ss_pred             HHHHHhccHHHHHHHcCCCcccchHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999998764

This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms.

>TIGR03419 NifU_clost FeS cluster assembly scaffold protein NifU, Clostridium type

Probab=100.00  E-value=5.7e-38  Score=238.43  Aligned_cols=120  Identities=55%  Similarity=0.958  Sum_probs=113.4

Q ss_pred             HHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHcCCC
Q 030644           33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQ  112 (174)
Q Consensus        33 Y~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~GKt  112 (174)
                      |+++||+||.||+|+|.+++++.   .++.+||+|||.|+|||++++  ++|+|++|+++||++|+||+|+|+++++|||
T Consensus         1 Y~~~il~~~~np~~~g~l~~~~~---~~~~~np~CGD~i~l~l~i~~--~~I~d~~f~~~GC~is~Asas~~~e~i~Gk~   75 (121)
T TIGR03419         1 YSEKVMDHFMNPRNVGEIENADG---VGEVGNPKCGDIMKIFLKVED--DIIKDVKFKTFGCGAAIASSSMATEMIKGKT   75 (121)
T ss_pred             ChHHHHHHHhCCCCCCCCCCCCe---EEEeCCCCCccEEEEEEEEcC--CEEEEEEEEEeccHHHHHHHHHHHHHHcCCC
Confidence            89999999999999999999874   467899999999999999987  8999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHHhhcC-CCCchhHHHHHHHHHHHHHHHHHHHhcC
Q 030644          113 MQEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDYEAKRT  157 (174)
Q Consensus       113 l~ea~~i~~~~i~e~L~-~~~~R~~CA~L~~~AL~~AL~~~~~~~~  157 (174)
                      ++|+..|..+++.+.|+ +|++|++|++|+|+||++++++|..+++
T Consensus        76 l~ea~~i~~~~i~~~l~~l~~~r~~CA~la~~al~~a~~~y~~~~~  121 (121)
T TIGR03419        76 LEEAWELTNKAVAEALDGLPPVKMHCSVLAEEAIHKAINDYREKNG  121 (121)
T ss_pred             HHHHHHhhhHHHHHHHcCCCcccCHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999988888885 8999999999999999999999988753

NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not.

>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]

Probab=100.00  E-value=1e-36  Score=239.73  Aligned_cols=129  Identities=54%  Similarity=0.936  Sum_probs=115.9

Q ss_pred             chhhhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHH
Q 030644           27 AAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATE  106 (174)
Q Consensus        27 ~~~~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~e  106 (174)
                      +.+|.+|+++|++||.||+|.|.+++++.  ..+..++|+|||.|+|||++++  |+|+|++|+++||+++|||+|+|++
T Consensus         1 ~~~~~~y~~~Ildh~~np~~~g~l~~~~~--~~~~~~~~~CGD~i~l~lkv~~--~~I~d~~F~~~GC~is~ASss~~te   76 (150)
T COG0822           1 SNLDDLYSEKILDHYKNPRNVGVLDDADV--GVGHVGAPACGDVITLYLKVDN--GVIEDAKFKGFGCAISIASSSMMTE   76 (150)
T ss_pred             CcHHHHHHHHHHHHhcCCCcCCccCccch--hccccCCCCccceEEEEEEEcC--CEEEEEEeeecCcHHHHHHHHHHHH
Confidence            35799999999999999999999999874  3456678999999999999997  9999999999999999999999999


Q ss_pred             HHcCCCHHHHHhhhHH--HHHhhcC-----------------CCCchhHHHHHHHHHHHHHHHHHHHhcCCC
Q 030644          107 WVKGKQMQEVLSIKNT--EIAKHLS-----------------LPPVKLHCSMLAEDAIKAAVKDYEAKRTKP  159 (174)
Q Consensus       107 l~~GKtl~ea~~i~~~--~i~e~L~-----------------~~~~R~~CA~L~~~AL~~AL~~~~~~~~~~  159 (174)
                      +++|||++||.+|+..  ++.+.++                 ++|.|++|++|+|+||++++++|..++...
T Consensus        77 ~v~Gkti~EAl~i~~~~~~m~~~~~~~~~~~l~d~~~l~~v~~~p~r~~C~~L~~~al~~ai~~~~~~~~~~  148 (150)
T COG0822          77 LVKGKTLDEALKITEAFTDMAKELGGDPDDRLGDLVALAGVALPPARIKCSLLAWDALKAAIKDYKGKAEEA  148 (150)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHcCCCccchhhhhHhhhhhccccccccchhccHHHHHHHHHHhhcccccc
Confidence            9999999999999955  4445443                 899999999999999999999999886643

>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=100.00  E-value=3.9e-36  Score=229.30  Aligned_cols=123  Identities=48%  Similarity=0.918  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHcCC
Q 030644           32 LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGK  111 (174)
Q Consensus        32 lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~GK  111 (174)
                      +|+++|++||.||+|+|.++++++  ++++.+||+|||+|+|||+|++++|+|+|++|+++||++++||+|+|+++++||
T Consensus         1 ~Y~~~i~~~~~nP~~~g~l~~~~~--~~~~~~n~~CGD~i~i~l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk   78 (126)
T PF01592_consen    1 MYSDKILDHYRNPRNYGKLEDADA--GTGEAGNPSCGDEIRIYLKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGK   78 (126)
T ss_dssp             HHHHHHHHHHHSTSSBSSSTTTSS--EEEEEEETTTTEEEEEEEEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTS
T ss_pred             CchHHHHHHHhCCCCCCCCCCCCc--ceeeecCCCCCCEEEEEEEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCC
Confidence            699999999999999999999885  246778999999999999999866899999999999999999999999999999


Q ss_pred             CHHHHHhhhHHHHHhhcC-CCCchhHHHHHHHHHHHHHHHHHHHhc
Q 030644          112 QMQEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDYEAKR  156 (174)
Q Consensus       112 tl~ea~~i~~~~i~e~L~-~~~~R~~CA~L~~~AL~~AL~~~~~~~  156 (174)
                      |++||.+|+.+++.+.|+ +|+.|.+|+.|++.||++++++|..++
T Consensus        79 ~l~ea~~i~~~~i~~~l~~~~~~~~~~~~l~~~al~~av~~y~~r~  124 (126)
T PF01592_consen   79 TLEEALKITAEDIEEALGGLPPERQHCAELADDALKAAVADYPARH  124 (126)
T ss_dssp             BHHHHHCHHHHHHHHHHTC-CGTCGHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999996 899999999999999999999999875

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....

>TIGR01994 SUF_scaf_2 SUF system FeS assembly protein, NifU family

Probab=100.00  E-value=9.8e-36  Score=230.52  Aligned_cols=117  Identities=33%  Similarity=0.602  Sum_probs=104.2

Q ss_pred             hhhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHH
Q 030644           29 MPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWV  108 (174)
Q Consensus        29 ~~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~  108 (174)
                      ++++|+++|++||.||+|+|.+++++.   .++.+||+|||+|+||++|++  ++|++++|+++||++|+||+|+|++++
T Consensus         1 ~~~lY~~~Ileh~~~p~n~g~l~~~~~---~~~~~np~CGD~i~l~l~v~~--~~I~d~~f~~~GCais~Asas~~~e~i   75 (137)
T TIGR01994         1 LDSLYRQVILDHYKNPRHRGKLEDATV---QERGHNPTCGDEITLTVKLEG--DRIEDIAFEGEGCSISQASASMMTELI   75 (137)
T ss_pred             ChHHHHHHHHHHHhCCCCCCCCCCCCe---eEEeCCCCCCcEEEEEEEEcC--CeEEEEEEEecccHHHHHHHHHHHHHH
Confidence            367999999999999999999998874   457789999999999999987  899999999999999999999999999


Q ss_pred             cCCCHHHHHhhhHHHH---H--------hhc---------CCCCchhHHHHHHHHHHHHHHH
Q 030644          109 KGKQMQEVLSIKNTEI---A--------KHL---------SLPPVKLHCSMLAEDAIKAAVK  150 (174)
Q Consensus       109 ~GKtl~ea~~i~~~~i---~--------e~L---------~~~~~R~~CA~L~~~AL~~AL~  150 (174)
                      +|||++|+..+..++.   .        +.|         ..+|+|++|++|+|+||++||+
T Consensus        76 ~Gk~~~ea~~l~~~~~~ml~~~~~~~~~~~l~dl~~l~~v~~~p~R~~Ca~L~~~al~~al~  137 (137)
T TIGR01994        76 KGKTVEEALSLVEAFSEMIQGQETDEDEEKLGDAEALAGVAKFPARIKCATLAWKALERALA  137 (137)
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCCCccccccchHHHhhccccCcchHHHHHHHHHHHHHHhC
Confidence            9999999999998632   1        011         3589999999999999999973

Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred.

>cd06664 IscU_like Iron-sulfur cluster scaffold-like proteins

Probab=100.00  E-value=4.7e-35  Score=221.35  Aligned_cols=112  Identities=52%  Similarity=0.921  Sum_probs=104.3

Q ss_pred             hHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHcCC
Q 030644           32 LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGK  111 (174)
Q Consensus        32 lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~GK  111 (174)
                      +|+++|++||.||+|.|.+++++.   .++.+||+|||+|+||+++++  ++|++++|+++||++++||+|+|+++++||
T Consensus         1 ~y~~~il~~~~~p~~~g~l~~~~~---~~~~~n~~CGD~v~l~l~i~~--~~I~d~~f~~~GC~i~~Asas~~~~~~~Gk   75 (123)
T cd06664           1 LYSEIILDHYRNPRNVGRLEDADG---TGEVGNPLCGDEITLYLKVED--GRITDAKFQGFGCAISIASASLLTELIKGK   75 (123)
T ss_pred             CcHHHHHHHhhCCCCCCCCCCCCe---EEEcCCCCCCceEEEEEEEcC--CEEEEEEEEecCcHHHHHHHHHHHHHHcCC
Confidence            699999999999999999998864   467899999999999999988  899999999999999999999999999999


Q ss_pred             CHHHHHhhhHHHHHhh-----------cCCCCchhHHHHHHHHHHHHH
Q 030644          112 QMQEVLSIKNTEIAKH-----------LSLPPVKLHCSMLAEDAIKAA  148 (174)
Q Consensus       112 tl~ea~~i~~~~i~e~-----------L~~~~~R~~CA~L~~~AL~~A  148 (174)
                      |++|+..|+.+++...           .+.||+|++|++|+|+||+++
T Consensus        76 ~~~ea~~i~~~~~~~~~~~~~l~~~~~~~~~~~R~~Ca~L~~~Al~~a  123 (123)
T cd06664          76 TLDEALKLLNKDIAMLDGKEELAALAGVGLPPARIHCALLAWKALKAA  123 (123)
T ss_pred             cHHHHHHHHHHHHHHhcCchhHHHhcccccCcccchHHHHHHHHHHhC
Confidence            9999999999987654           368999999999999999874

IscU_like and NifU_like proteins. IscU and NifU function as a scaffold for the assembly of [2Fe-2S] clusters before they are transferred to apo target proteins. They are highly conserved and play vital roles in the ISC and NIF systems of Fe-S protein maturation. NIF genes participate in nitrogen fixation in several isolated bacterial species. The NifU domain, however, is also found in bacteria that do not fix nitrogen, so it may have wider significance in the cell. Human IscU interacts with frataxin, the Friedreich ataxia gene product, and incorrectly spliced IscU has been shown to disrupt iron homeostasis in skeletal muscle and cause myopathy.

>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]

Probab=100.00  E-value=9e-35  Score=222.74  Aligned_cols=130  Identities=82%  Similarity=1.253  Sum_probs=126.1

Q ss_pred             hhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHc
Q 030644           30 PRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVK  109 (174)
Q Consensus        30 ~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~  109 (174)
                      ..+|++.+++||.||||.|.++..+.++|+|..|-|.|||.++|+++|+++ |+|+|++|.++||+..|||+|+++||++
T Consensus        26 ~rlYh~~VidHy~nPRNVGSldK~dpnVGtGlVGAPACGDVMkLqIkvd~~-g~I~dakFKTFGCGSAIASSS~aTewvk  104 (157)
T KOG3361|consen   26 SRLYHENVIDHYENPRNVGSLDKNDPNVGTGLVGAPACGDVMKLQIKVDDS-GVIEDAKFKTFGCGSAIASSSLATEWVK  104 (157)
T ss_pred             hhhcchhhhhcccCccccCccCCCCCCcccccccCccccceeeEEEEECCC-CcEEEeeeeecccchHhhhhHHHHHHHc
Confidence            389999999999999999999999999999999999999999999999875 9999999999999999999999999999


Q ss_pred             CCCHHHHHhhhHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 030644          110 GKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPS  160 (174)
Q Consensus       110 GKtl~ea~~i~~~~i~e~L~~~~~R~~CA~L~~~AL~~AL~~~~~~~~~~~  160 (174)
                      |||++|+.+|...+|.++|.+||.++||.+|+.+|++.|+.+|+.++..+.
T Consensus       105 gkt~dea~kIkNteIAKeL~LPPVKLHCSMLAEDAIKaAikdyk~Kq~~~~  155 (157)
T KOG3361|consen  105 GKTLDEALKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDYKEKQNKPN  155 (157)
T ss_pred             cccHHHHHhcccHHHHHhccCCchhhhhHHHHHHHHHHHHHHHHHhccCCC
Confidence            999999999999999999999999999999999999999999999988765

>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU

Probab=100.00  E-value=2.2e-34  Score=247.24  Aligned_cols=125  Identities=46%  Similarity=0.831  Sum_probs=115.8

Q ss_pred             hhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHc
Q 030644           30 PRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVK  109 (174)
Q Consensus        30 ~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~  109 (174)
                      |. |+++||+||.||+|+|.+++++.   .++.+||+|||.|+|||+|++++++|+|++|+++||++++||+|+|+++++
T Consensus         2 ~~-Ys~~Ildh~~nP~n~G~L~~~~~---~g~~~np~CGD~i~l~l~vd~~~~~I~d~~F~~~GCais~ASAs~~~eli~   77 (290)
T TIGR02000         2 WD-YTDKVKEHFYNPKNAGVVEDANA---VGEVGSISCGDALRLMLKVDPESDKIVDAGFQTFGCGSAIASSSALTEMIK   77 (290)
T ss_pred             cc-hHHHHHHHHhCcCCCCCCCCCCc---EEEeCCCCCcceEEEEEEEcCCCCeEEEEEEEecCcHHHHHHHHHHHHHHc
Confidence            44 99999999999999999999874   467899999999999999984348999999999999999999999999999


Q ss_pred             CCCHHHHHhhhHHHHHhhcC-CCCchhHHHHHHHHHHHHHHHHHHHhcCC
Q 030644          110 GKQMQEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDYEAKRTK  158 (174)
Q Consensus       110 GKtl~ea~~i~~~~i~e~L~-~~~~R~~CA~L~~~AL~~AL~~~~~~~~~  158 (174)
                      |||++||..|+.+++.++|+ +||+|+||+.|+|+||++||++|..+.+.
T Consensus        78 Gktv~ea~~i~~~di~~~L~~lpp~r~~CA~La~~Al~~Al~~y~~kp~~  127 (290)
T TIGR02000        78 GLTLDEALKVSNQDIADYLGGLPPEKMHCSVMGQEALEAAIANYRGEPLE  127 (290)
T ss_pred             CCCHHHHHHhhHHHHHHHHcCCChhhchHHHHHHHHHHHHHHHHhcCccc
Confidence            99999999999999999885 99999999999999999999999877554

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.

>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins

Probab=93.53  E-value=2.4  Score=32.29  Aligned_cols=108  Identities=18%  Similarity=0.210  Sum_probs=67.1

Q ss_pred             hhhhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCc-hhHHHHHHHHHH
Q 030644           28 AMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGC-GSAIASSSVATE  106 (174)
Q Consensus        28 ~~~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GC-ais~ASasil~e  106 (174)
                      +-|+..-+.|+++.++......-...+.+    .  -+.|-..|=|+....++ |++   .|.++.= .+...-.+++.+
T Consensus         9 ~~~~~ry~~Li~lgk~lp~l~~~~~~~~~----~--V~GC~S~vWl~~~~~~~-g~~---~f~adSda~ivkGl~all~~   78 (125)
T PF02657_consen    9 DDWEERYRYLIDLGKKLPPLPEELRTDEN----L--VHGCQSQVWLHVEEDED-GKV---HFRADSDARIVKGLLALLLE   78 (125)
T ss_dssp             SSHHHHHHHHHHHHHTS----CCCCSCCE----E--ETSSSS-EEEEEEEETT-SEE---EEEEEESSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCCCHHHhcccc----c--CCCCccceeEeeeeccC-CEE---EEEecCccHHHHHHHHHHHH
Confidence            34666777889999887765433322222    1  24599988775444432 765   6666543 477788999999


Q ss_pred             HHcCCCHHHHHhhhHHHHHhhcC----CCCchhHHHHHHHHHHH
Q 030644          107 WVKGKQMQEVLSIKNTEIAKHLS----LPPVKLHCSMLAEDAIK  146 (174)
Q Consensus       107 l~~GKtl~ea~~i~~~~i~e~L~----~~~~R~~CA~L~~~AL~  146 (174)
                      .+.|+|.+|+..+..+ +.+.+|    +.|+|..=..-.++-++
T Consensus        79 ~~~g~t~~eI~~~~~~-fl~~lgl~~~Ls~sR~nGl~~~~~~ik  121 (125)
T PF02657_consen   79 VLNGQTPEEILAFDPD-FLEQLGLSQHLSPSRSNGLLAMLQRIK  121 (125)
T ss_dssp             HTTT-BHHHHHHS-TH-HHHHHTSCCCSTHHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHhCCHH-HHHHcCcccccCchHHHHHHHHHHHHH
Confidence            9999999999999999 455554    57888764444444433

This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.

>PRK15019 CsdA-binding activator; Provisional

Probab=90.16  E-value=7.8  Score=30.50  Aligned_cols=107  Identities=15%  Similarity=0.035  Sum_probs=69.1

Q ss_pred             hhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCc-hhHHHHHHHHHHHH
Q 030644           30 PRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGC-GSAIASSSVATEWV  108 (174)
Q Consensus        30 ~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GC-ais~ASasil~el~  108 (174)
                      |+.--+.|+++.+.-.-   +++... .  -...-+-|-..|=|...++++ |   .+.|.++.= .|...-++++.+.+
T Consensus        30 weeRy~~LI~lgk~Lp~---lpe~~r-~--~~~~V~GCqS~VWL~~~~~~d-g---~~~f~~dSDA~IvkGl~alL~~~~   99 (147)
T PRK15019         30 WEDKYRQLIMLGKQLPA---LPDELK-A--QAKEIAGCENRVWLGYTVAEN-G---KMHFFGDSEGRIVRGLLAVLLTAV   99 (147)
T ss_pred             HHHHHHHHHHHHhhCCC---CChHHc-C--ccCcCCCcccceeeeeeecCC-C---EEEEEeeCccHHHHHHHHHHHHHH
Confidence            44444556777765443   332211 0  011234588888776666432 5   466766543 46778889999999


Q ss_pred             cCCCHHHHHhhhHHHHHhhcC----CCCchhHHHHHHHHHHH
Q 030644          109 KGKQMQEVLSIKNTEIAKHLS----LPPVKLHCSMLAEDAIK  146 (174)
Q Consensus       109 ~GKtl~ea~~i~~~~i~e~L~----~~~~R~~CA~L~~~AL~  146 (174)
                      .|+|.+|+..++.+++.+.||    +.|+|..=..-.++.++
T Consensus       100 ~g~tp~eIl~~d~~~~~~~lGL~~~LSpsR~NGl~ami~~I~  141 (147)
T PRK15019        100 EGKTAAELQAQSPLALFDELGLRAQLSASRSQGLNALSEAII  141 (147)
T ss_pred             cCCCHHHHHhcCHHHHHHHCCchhhcCccHHHHHHHHHHHHH
Confidence            999999999999977777776    67999874444444433

>PRK09296 cysteine desufuration protein SufE; Provisional

Probab=89.36  E-value=8.6  Score=29.86  Aligned_cols=107  Identities=10%  Similarity=0.011  Sum_probs=68.2

Q ss_pred             hhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCc-hhHHHHHHHHHHHH
Q 030644           30 PRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGC-GSAIASSSVATEWV  108 (174)
Q Consensus        30 ~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GC-ais~ASasil~el~  108 (174)
                      |+---+.|+++.+.-..   +++... .  ....-+-|-..|=|...++++ |   .+.|.++.= .|...-++++...+
T Consensus        20 we~Ry~~LI~lgk~Lp~---lpe~~r-~--~~~~V~GCqS~VWl~~~~~~~-g---~~~f~~dSDa~ivkGl~alL~~~~   89 (138)
T PRK09296         20 WEEKYLYIIELGQRLPP---LTDEDR-S--PQNLIQGCQSQVWIVMRQNAQ-G---IIELQGDSDAAIVKGLIAVVFILY   89 (138)
T ss_pred             HHHHHHHHHHHHhhCCC---CCHHHc-C--ccccCCCcccceeeeEeecCC-C---EEEEEEecccHHHHHHHHHHHHHH
Confidence            54444566788775543   332211 0  111234588877776666553 5   466766543 46777889999999


Q ss_pred             cCCCHHHHHhhhHHHHHhhcC----CCCchhHHHHHHHHHHH
Q 030644          109 KGKQMQEVLSIKNTEIAKHLS----LPPVKLHCSMLAEDAIK  146 (174)
Q Consensus       109 ~GKtl~ea~~i~~~~i~e~L~----~~~~R~~CA~L~~~AL~  146 (174)
                      .|+|.+|+..++..++.+.||    +.|+|..=..-.++.++
T Consensus        90 ~g~tp~eIl~~d~~~~~~~lGL~~~LSpsR~nGl~aml~~ik  131 (138)
T PRK09296         90 QQMTPQDIVNFDVRPWFEKLALTQHLTPSRSQGLEAMIRAIR  131 (138)
T ss_pred             cCCCHHHHHhCChHHHHHHcCcccccCccHHHHHHHHHHHHH
Confidence            999999999999755556665    67899874433333333

>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE

Probab=88.32  E-value=10  Score=29.43  Aligned_cols=100  Identities=13%  Similarity=0.034  Sum_probs=64.1

Q ss_pred             hhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecC-chhHHHHHHHHHHHH
Q 030644           30 PRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFG-CGSAIASSSVATEWV  108 (174)
Q Consensus        30 ~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~G-Cais~ASasil~el~  108 (174)
                      |+.--+.|+++.+.-.   .+++... .  -...-+-|-..|=|...+.++ |   .+.|.++. -.|...-.+++.+.+
T Consensus        25 we~ry~~lI~lgk~Lp---~lpe~~r-~--~~~~V~GCqS~VWl~~~~~~d-g---~~~f~~dSDa~IvkGl~alL~~~~   94 (138)
T TIGR03391        25 WEDRYRQLILLAKQLP---ALPEALK-T--QATELTGCENRVWLGHQVLPD-G---TLHFYGDSEGRIVRGLLAVLLTAV   94 (138)
T ss_pred             HHHHHHHHHHHHhhCC---CCChHHc-C--hhhccCCcccceeeeeeecCC-C---EEEEEecCccHHHHHHHHHHHHHH
Confidence            3333345677776443   2333211 0  011234588887766554332 6   45576654 356778889999999


Q ss_pred             cCCCHHHHHhhhHHHHHhhcC----CCCchhHHHH
Q 030644          109 KGKQMQEVLSIKNTEIAKHLS----LPPVKLHCSM  139 (174)
Q Consensus       109 ~GKtl~ea~~i~~~~i~e~L~----~~~~R~~CA~  139 (174)
                      .|+|.+|+..++.+++.+.||    +.|+|..=..
T Consensus        95 ~g~tp~eI~~~d~~~~~~~lGL~~~LSpsR~NGl~  129 (138)
T TIGR03391        95 EGKTPEQLLAQDPLALFDELGLRAQLSASRSNGLA  129 (138)
T ss_pred             cCCCHHHHHHCCHHHHHHHcCchhccCccHHHHHH
Confidence            999999999999876777775    6788887433

Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PLN02673 quinolinate synthetase A

Probab=86.02  E-value=24  Score=34.47  Aligned_cols=85  Identities=13%  Similarity=0.142  Sum_probs=62.8

Q ss_pred             CCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHcCCCHHHHHhhhHHHHHhh-cC---CCCchhHHHHH
Q 030644           65 PACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKH-LS---LPPVKLHCSML  140 (174)
Q Consensus        65 psCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~GKtl~ea~~i~~~~i~e~-L~---~~~~R~~CA~L  140 (174)
                      +-|-..|=|...++++ |+ ..+.+..++ .|...-+.++...+.|+|.+|+..++.+++.+. ||   ..|+|..=..-
T Consensus       127 ~GCQSqVWL~~elddd-Gk-v~F~ADSDA-~IVKGL~ALLl~~lsG~TpeEILavD~d~~~~LGLGL~~~SPSRsNGL~n  203 (724)
T PLN02673        127 MGCTAQVWLEAELDQD-GK-MRFWADSDS-EITKGFCSCLIWVLDGASPEEVLELKTEDLAALNVGLPGGERSRVNTWHN  203 (724)
T ss_pred             CCcccceEEEEEEcCC-CE-EEEEEeCcc-HHHHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHhhhhcccCCchhHHHHH
Confidence            4688888777777653 53 345555566 788999999999999999999999999887432 13   37889886666


Q ss_pred             HHHHHHHHHHHH
Q 030644          141 AEDAIKAAVKDY  152 (174)
Q Consensus       141 ~~~AL~~AL~~~  152 (174)
                      ..+.+++-+...
T Consensus       204 ML~~Iq~~Ar~l  215 (724)
T PLN02673        204 VLVSMQKRTRRL  215 (724)
T ss_pred             HHHHHHHHHHHH
Confidence            666666665553

>TIGR01038 L22_arch ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal)

Probab=84.29  E-value=4.6  Score=31.94  Aligned_cols=68  Identities=7%  Similarity=0.061  Sum_probs=48.7

Q ss_pred             cCchhHHHHHHHHHHHHcCCCHHHHHhhhHHHHHhhcC--------------------CCC--chhHHHHHHHHHHHHHH
Q 030644           92 FGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLS--------------------LPP--VKLHCSMLAEDAIKAAV  149 (174)
Q Consensus        92 ~GCais~ASasil~el~~GKtl~ea~~i~~~~i~e~L~--------------------~~~--~R~~CA~L~~~AL~~AL  149 (174)
                      ..--+|-==+-.++.+++||++++|..+....+...--                    ...  .-.+|+.+..+.|+.|.
T Consensus        17 ~~~riS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~~~g~~~~~~~~~~~~gR~P~Kaa~~i~klL~sA~   96 (150)
T TIGR01038        17 RNLRVSFKNARETARAIRGMELDKARKYLEDVIEMKRAVPFRRYNGKVGHRRGLKEWGWTAGRYPVKAAKFILKVLQNAE   96 (150)
T ss_pred             CCCcccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCccccccccccccccCCCchHHHHHHHHHHHHHH
Confidence            33344444567889999999999999999986543221                    111  24589999999999999


Q ss_pred             HHHHHhcCCC
Q 030644          150 KDYEAKRTKP  159 (174)
Q Consensus       150 ~~~~~~~~~~  159 (174)
                      .+.+.+..++
T Consensus        97 aNA~~~gld~  106 (150)
T TIGR01038        97 ANAEYKGLDV  106 (150)
T ss_pred             HHHHhcCCCh
Confidence            9987644443

This model describes the ribosomal protein of the eukaryotic cytosol and of the Archaea, variously designated as L17, L22, and L23. The corresponding bacterial homolog, described by a separate model, is designated L22.

>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named

Probab=83.33  E-value=12  Score=27.09  Aligned_cols=46  Identities=20%  Similarity=0.517  Sum_probs=28.9

Q ss_pred             CCCEEEEEEEEeCCCC----ceeeeeeeecCchhHHHHHHHHHHHH-----cCCCHHHHH
Q 030644           67 CGDVMKLQIKVDEETG----QIVDACFKTFGCGSAIASSSVATEWV-----KGKQMQEVL  117 (174)
Q Consensus        67 CGD~I~l~l~v~~~~g----~I~d~~F~~~GCais~ASasil~el~-----~GKtl~ea~  117 (174)
                      || .+.+.+..++++|    ++.++++.| ||   .+-.+.++.++     .|.+++++.
T Consensus         7 ~g-~~yvtv~~d~d~g~p~Evf~~~~~~G-g~---~~~~~ai~rliS~~Lr~G~~~~~ii   61 (95)
T PF12637_consen    7 CG-KLYVTVNFDEDNGRPFEVFINVGKAG-GC---SGNLEAIARLISLALRSGVPPEEII   61 (95)
T ss_pred             cc-ceEEEEEeeCCCCcceEEEEecCcCC-Cc---hHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            65 3333334443324    667776665 66   66667788888     899988743

Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.

>PTZ00178 60S ribosomal protein L17; Provisional

Probab=83.20  E-value=4.5  Score=33.02  Aligned_cols=64  Identities=14%  Similarity=0.070  Sum_probs=46.8

Q ss_pred             hHHHHHHHHHHHHcCCCHHHHHhhhHHHHHhhc--------------------CCCCc--hhHHHHHHHHHHHHHHHHHH
Q 030644           96 SAIASSSVATEWVKGKQMQEVLSIKNTEIAKHL--------------------SLPPV--KLHCSMLAEDAIKAAVKDYE  153 (174)
Q Consensus        96 is~ASasil~el~~GKtl~ea~~i~~~~i~e~L--------------------~~~~~--R~~CA~L~~~AL~~AL~~~~  153 (174)
                      +|-==+-.++++|.||++++|..+....|...-                    +.+..  -.+++.+..+.|+.|..+.+
T Consensus        24 iSpkk~r~Va~~IRGk~v~~A~~~L~~Vi~~k~~VPf~r~~~~vgh~~~~~~~~~~~GR~P~KaA~~i~KlL~SA~aNAe  103 (181)
T PTZ00178         24 VHFKNTYETARAIKGMKLARAQKYLEDVLAKKRCVPFRRFNGGVGRTAQAKEFGHTQGRWPEKSVKFVLSLLKNAEANAE  103 (181)
T ss_pred             cchHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeecCCccccccccccccccCcCcHHHHHHHHHHHHHHHHHHH
Confidence            444446788999999999999999998654321                    11222  45899999999999999987


Q ss_pred             HhcCCC
Q 030644          154 AKRTKP  159 (174)
Q Consensus       154 ~~~~~~  159 (174)
                      ....++
T Consensus       104 ~~gld~  109 (181)
T PTZ00178        104 AKGLDV  109 (181)
T ss_pred             hcCCCh
Confidence            544433

>PRK04223 rpl22p 50S ribosomal protein L22P; Reviewed

Probab=82.53  E-value=5.9  Score=31.43  Aligned_cols=60  Identities=15%  Similarity=0.138  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHcCCCHHHHHhhhHHHHHhh--c----------------CCCC--chhHHHHHHHHHHHHHHHHHHHhcCC
Q 030644           99 ASSSVATEWVKGKQMQEVLSIKNTEIAKH--L----------------SLPP--VKLHCSMLAEDAIKAAVKDYEAKRTK  158 (174)
Q Consensus        99 ASasil~el~~GKtl~ea~~i~~~~i~e~--L----------------~~~~--~R~~CA~L~~~AL~~AL~~~~~~~~~  158 (174)
                      ==+..++.++.||++++|..+....+...  +                +.+.  .-.+|+.+..+.|+.|..+++.+..+
T Consensus        28 kk~r~va~~IRG~~v~~A~~~L~~V~~~k~~vPf~r~~~~~g~~~~~~~~~~gr~PkKaa~~i~KlL~sA~aNA~~~gld  107 (153)
T PRK04223         28 KHSVEIAREIRGMKLDEAKAYLEDVIALKRAVPFKRHNKKVGHRKGIDGWPAGRYPVKAAKAFLKLLENAEANAEYKGLD  107 (153)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCccccccccccccCCCchHHHHHHHHHHHHHHHHHHhcCCC
Confidence            34578899999999999999999865432  1                1122  23589999999999999998764333

>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]

Probab=81.70  E-value=24  Score=27.85  Aligned_cols=78  Identities=17%  Similarity=0.158  Sum_probs=55.6

Q ss_pred             CCCCCEEEEEEEEeCCCCceeeeeeeecCc-hhHHHHHHHHHHHHcCCCHHHHHhhhHHHHHhhcC----CCCchhHHHH
Q 030644           65 PACGDVMKLQIKVDEETGQIVDACFKTFGC-GSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLS----LPPVKLHCSM  139 (174)
Q Consensus        65 psCGD~I~l~l~v~~~~g~I~d~~F~~~GC-ais~ASasil~el~~GKtl~ea~~i~~~~i~e~L~----~~~~R~~CA~  139 (174)
                      +-|-..|=|....++  +  -.+.|.|+.= .|...-++++...+.|||.+|+..++..++.+.||    +.|.|..=..
T Consensus        54 ~GC~S~vwL~~~~~~--~--~~~~F~gdSdA~ivrGL~aill~~~~G~t~~eI~~~~~~~~f~~LGL~~~LSpsR~nGl~  129 (144)
T COG2166          54 PGCQSQVWLVTEQND--D--GTLHFFGDSDARIVRGLLAILLAAYSGKTAAEILAFDPLDFFEELGLAQHLSPSRSNGLE  129 (144)
T ss_pred             CccccceeEEEeecC--C--ceEEEeccchhHHHHHHHHHHHHHHcCCCHHHHHcCCHHHHHHHhhHHHhcChHHhhHHH
Confidence            457776655555555  3  3567887654 46677889999999999999999999976777775    6888887443


Q ss_pred             HHHHHHH
Q 030644          140 LAEDAIK  146 (174)
Q Consensus       140 L~~~AL~  146 (174)
                      --.+.++
T Consensus       130 am~~~i~  136 (144)
T COG2166         130 AMLKRIK  136 (144)
T ss_pred             HHHHHHH
Confidence            3333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
3lvl_A	129	Crystal Structure Of E.Coli Iscs-Iscu Complex Lengt		1e-49
2l4x_A	128	Solution Structure Of Apo-Iscu(Wt) Length = 128		1e-49
2kqk_A	128	Solution Structure Of Apo-Iscu(D39a) Length = 128		1e-48
1q48_A	134	Solution Nmr Structure Of The Haemophilus Influenza		3e-48
1wfz_A	130	Solution Structure Of Iron-Sulfur Cluster Protein U		3e-47
4eb5_C	153	A. Fulgidus Iscs-Iscu Complex Structure Length = 15		2e-27
2z7e_A	157	Crystal Structure Of Aquifex Aeolicus Iscu With Bou		3e-27
1xjs_A	147	Solution Structure Of Iron-Sulfur Cluster Assembly		1e-11
2qq4_A	138	Crystal Structure Of Iron-Sulfur Cluster Biosynthes		3e-10
1su0_B	159	Crystal Structure Of A Hypothetical Protein At 2.3		5e-09

>pdb|3LVL|A Chain A, Crystal Structure Of E.Coli Iscs-Iscu Complex Length = 129

Iteration: 1
 Score =  192 bits (487), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 90/124 (72%), Positives = 106/124 (85%), Gaps = 1/124 (0%)
Query: 33  YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
           Y E VIDHY NPRNVGSF+ ND  VG+G+VGAPACGDVMKLQIKV++E G I DA FKT+
Sbjct: 4   YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDE-GIIEDARFKTY 62
Query: 93  GCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY 152
           GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY
Sbjct: 63  GCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADY 122
Query: 153 EAKR 156
           ++KR
Sbjct: 123 KSKR 126

>pdb|2L4X|A Chain A, Solution Structure Of Apo-Iscu(Wt) Length = 128

Iteration: 1
 Score =  192 bits (487), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 90/124 (72%), Positives = 106/124 (85%), Gaps = 1/124 (0%)
Query: 33  YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
           Y E VIDHY NPRNVGSF+ ND  VG+G+VGAPACGDVMKLQIKV++E G I DA FKT+
Sbjct: 3   YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDE-GIIEDARFKTY 61
Query: 93  GCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY 152
           GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY
Sbjct: 62  GCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADY 121
Query: 153 EAKR 156
           ++KR
Sbjct: 122 KSKR 125

>pdb|2KQK|A Chain A, Solution Structure Of Apo-Iscu(D39a) Length = 128

Iteration: 1
 Score =  188 bits (478), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 105/124 (84%), Gaps = 1/124 (0%)
Query: 33  YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
           Y E VIDHY NPRNVGSF+ ND  VG+G+VGAPACG VMKLQIKV++E G I DA FKT+
Sbjct: 3   YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGAVMKLQIKVNDE-GIIEDARFKTY 61
Query: 93  GCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY 152
           GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY
Sbjct: 62  GCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADY 121
Query: 153 EAKR 156
           ++KR
Sbjct: 122 KSKR 125

>pdb|1Q48|A Chain A, Solution Nmr Structure Of The Haemophilus Influenzae Iron- Sulfur Cluster Assembly Protein U (Iscu) With Zinc Bound At The Active Site. Northeast Structural Genomics Consortium Target Ir24. This Protein Is Not Apo, It Is A Model Without Zinc Binding Constraints. Length = 134

Iteration: 1
 Score =  187 bits (475), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 88/124 (70%), Positives = 106/124 (85%), Gaps = 1/124 (0%)
Query: 33  YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
           Y E VIDHY NPRNVGS +K D+ VGTG+VGAPACGDVM+LQIKVD+  G I DA FKT+
Sbjct: 3   YSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVDD-NGIIEDAKFKTY 61
Query: 93  GCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY 152
           GCGSAIASSS+ TEWVKGK ++E  +IKN++IA+ L LPPVK+HCS+LAEDAIKAA+ DY
Sbjct: 62  GCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADY 121
Query: 153 EAKR 156
           +AK+
Sbjct: 122 KAKQ 125

>pdb|1WFZ|A Chain A, Solution Structure Of Iron-Sulfur Cluster Protein U (Iscu) Length = 130

Iteration: 1
 Score =  184 bits (466), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 91/121 (75%), Positives = 103/121 (85%), Gaps = 1/121 (0%)
Query: 43  NPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSS 102
           NPRNVGS +K    VGTGLVGAPACGDVMKLQI+VDE+ G+IVDA FKTFGCGSAIASSS
Sbjct: 9   NPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEK-GKIVDARFKTFGCGSAIASSS 67
Query: 103 VATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAA 162
           +ATEWVKGK ++E L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K+   S  
Sbjct: 68  LATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQESKSGP 127
Query: 163 S 163
           S
Sbjct: 128 S 128

>pdb|4EB5|C Chain C, A. Fulgidus Iscs-Iscu Complex Structure Length = 153

Iteration: 1
 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/137 (46%), Positives = 83/137 (60%), Gaps = 6/137 (4%)
Query: 32  LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
           +Y + V DH+ NPRNVG  E  D   G G VG P CGD+M + IKV +   +I D  F+T
Sbjct: 1   MYSDKVFDHFQNPRNVGKIEDAD---GVGTVGNPVCGDLMTIYIKVKD--NRIEDIKFQT 55
Query: 92  FGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVK 150
           FGC +AIA+SS+ATE  KGK ++E L I    +A+ L  LP  K+HCS LA DA++ A+ 
Sbjct: 56  FGCAAAIATSSMATEMAKGKTIEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRAIV 115
Query: 151 DYEAKRTKPSAASEAEL 167
           DY  K  K     E  L
Sbjct: 116 DYFRKNGKIDKIKELGL 132

>pdb|2Z7E|A Chain A, Crystal Structure Of Aquifex Aeolicus Iscu With Bound [2fe- 2s] Cluster Length = 157

Iteration: 1
 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 65/133 (48%), Positives = 83/133 (62%), Gaps = 4/133 (3%)
Query: 33  YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
           Y+E V+DH+ NPRNVG  E  DA  G G  G PACG  M   IKV+ E   I D  FKTF
Sbjct: 5   YNEKVLDHFLNPRNVGVLE--DAN-GVGQCGNPACGAAMLFTIKVNPENDVIEDVRFKTF 61
Query: 93  GCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKD 151
           GCGSAIA SS+ TE VKGK +Q  L++   +I + L  LPP K+HC+ L  + +  A+KD
Sbjct: 62  GCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKD 121
Query: 152 YEAKRTKPSAASE 164
           Y  K+ +   AS+
Sbjct: 122 YLMKQGRVEEASK 134

>pdb|1XJS|A Chain A, Solution Structure Of Iron-Sulfur Cluster Assembly Protein Iscu From Bacillus Subtilis, With Zinc Bound At The Active Site. Northeast Structural Genomics Consortium Target Sr17 Length = 147

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 27/138 (19%)
Query: 32  LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIV-DACFK 90
           LY + ++DHY NPRN G    ND+ V    +  P CGD ++L +K+D   G IV DA F+
Sbjct: 10  LYRQVIMDHYKNPRNKGVL--NDSIVVD--MNNPTCGDRIRLTMKLD---GDIVEDAKFE 62
Query: 91  TFGCGSAIASSSVATEWVKGKQMQEVLSIK-------------------NTEIAKHLSLP 131
             GC  ++AS+S+ T+ +KGK ++  LS+                    + E  + +S  
Sbjct: 63  GEGCSISMASASMMTQAIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKF 122
Query: 132 PVKLHCSMLAEDAIKAAV 149
           P ++ C+ L+  A++  V
Sbjct: 123 PARIKCATLSWKALEKGV 140

>pdb|2QQ4|A Chain A, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8 Length = 138

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 23/137 (16%)
Query: 32  LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
           LY E ++DHY +PRN G   +     G G+   P+CGD +++ + ++ +T  I D  F+ 
Sbjct: 7   LYREILLDHYQSPRNFGVLPQATKQAG-GM--NPSCGDQVEVMVLLEGDT--IADIRFQG 61
Query: 92  FGCGSAIASSSVATEWVKGKQMQEVLSIK-------------NTEIAKHLSLP-----PV 133
            GC  + AS+S+ TE VKGK++ E L +              +  +   L+L      P 
Sbjct: 62  QGCAISTASASLMTEAVKGKKVAEALELSRKFQAMVVEGAPPDPTLGDLLALQGVAKLPA 121
Query: 134 KLHCSMLAEDAIKAAVK 150
           ++ C+ LA  A++ A++
Sbjct: 122 RVKCATLAWHALEEALR 138

>pdb|1SU0|B Chain B, Crystal Structure Of A Hypothetical Protein At 2.3 A Resolution Length = 159

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 25/138 (18%)
Query: 32  LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
           LY   V DH   P + G  +  +A      +  P CGDV+ L +K DE+  +I D  F  
Sbjct: 9   LYMAVVADHSKRPHHHGQLDGVEAV----QLNNPTCGDVISLTVKFDED--KIEDIAFAG 62
Query: 92  FGCGSAIASSSVATEWVKGKQMQEVLSIKN--TEIAKHLSLP-----------------P 132
            GC  + ASSS+ T+ V GK  +E L++ +  +E+ +    P                 P
Sbjct: 63  NGCTISTASSSMMTDAVIGKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFP 122
Query: 133 VKLHCSMLAEDAIKAAVK 150
            ++ CS LA +A+K A+K
Sbjct: 123 QRIKCSTLAWNALKEAIK 140

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
2z7e_A	157	ISCU protein, NIFU-like protein; iron-sulfur clust	2e-67
3lvl_A	129	NIFU-like protein; protein-protein complex, struct	2e-67
4eb5_C	153	NIFU protein (NIFU-1); scaffold, transferase-metal	5e-64
1su0_B	159	NIFU like protein ISCU; structural genomics, BSGC	1e-50
1xjs_A	147	NIFU-like protein; SR17, structure, autostructure,	2e-46
2qq4_A	138	Iron-sulfur cluster biosynthesis protein ISCU; zin	5e-45
3k1f_M	197	Transcription initiation factor IIB; RNA polymeras	8e-05

>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus} Length = 157

 Score =  201 bits (514), Expect = 2e-67
 Identities = 64/137 (46%), Positives = 83/137 (60%), Gaps = 4/137 (2%)

Query: 29  MPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDAC 88
           M   Y+E V+DH+ NPRNVG  E  +   G G  G PACG  M   IKV+ E   I D  
Sbjct: 1   MSFEYNEKVLDHFLNPRNVGVLEDAN---GVGQCGNPACGAAMLFTIKVNPENDVIEDVR 57

Query: 89  FKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKA 147
           FKTFGCGSAIA SS+ TE VKGK +Q  L++   +I + L  LPP K+HC+ L  + +  
Sbjct: 58  FKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHV 117

Query: 148 AVKDYEAKRTKPSAASE 164
           A+KDY  K+ +   AS+
Sbjct: 118 AIKDYLMKQGRVEEASK 134

>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A Length = 129

 Score =  200 bits (511), Expect = 2e-67
 Identities = 90/128 (70%), Positives = 106/128 (82%), Gaps = 1/128 (0%)

Query: 31  RLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFK 90
             Y E VIDHY NPRNVGSF+ ND  VG+G+VGAPACGDVMKLQIKV++E G I DA FK
Sbjct: 2   SAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDE-GIIEDARFK 60

Query: 91  TFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVK 150
           T+GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ 
Sbjct: 61  TYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIA 120

Query: 151 DYEAKRTK 158
           DY++KR  
Sbjct: 121 DYKSKREA 128

>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C* Length = 153

 Score =  193 bits (491), Expect = 5e-64
 Identities = 64/137 (46%), Positives = 83/137 (60%), Gaps = 6/137 (4%)

Query: 32  LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
           +Y + V DH+ NPRNVG  E  D   G G VG P CGD+M + IKV +   +I D  F+T
Sbjct: 1   MYSDKVFDHFQNPRNVGKIEDAD---GVGTVGNPVCGDLMTIYIKVKD--NRIEDIKFQT 55

Query: 92  FGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVK 150
           FGC +AIA+SS+ATE  KGK ++E L I    +A+ L  LP  K+HCS LA DA++ A+ 
Sbjct: 56  FGCAAAIATSSMATEMAKGKTIEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRAIV 115

Query: 151 DYEAKRTKPSAASEAEL 167
           DY  K  K     E  L
Sbjct: 116 DYFRKNGKIDKIKELGL 132

>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2 Length = 159

 Score =  159 bits (403), Expect = 1e-50
 Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 25/157 (15%)

Query: 29  MPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDAC 88
           +  LY   V DH   P + G  +     V    +  P CGDV+ L +K DE   +I D  
Sbjct: 6   LNHLYMAVVADHSKRPHHHGQLDG----VEAVQLNNPTCGDVISLTVKFDE--DKIEDIA 59

Query: 89  FKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNT-------------------EIAKHLS 129
           F   GC  + ASSS+ T+ V GK  +E L++ +                    E+   ++
Sbjct: 60  FAGNGCTISTASSSMMTDAVIGKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVA 119

Query: 130 LPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASEAE 166
             P ++ CS LA +A+K A+K     +       +  
Sbjct: 120 KFPQRIKCSTLAWNALKEAIKRSANAQHLTDQNVKEG 156

>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A Length = 147

 Score =  147 bits (374), Expect = 2e-46
 Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 25/146 (17%)

Query: 29  MPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDAC 88
           +  LY + ++DHY NPRN G    +        +  P CGD ++L +K+D     + DA 
Sbjct: 7   LDTLYRQVIMDHYKNPRNKGVLNDSI----VVDMNNPTCGDRIRLTMKLDG--DIVEDAK 60

Query: 89  FKTFGCGSAIASSSVATEWVKGKQMQEVLSI-------------------KNTEIAKHLS 129
           F+  GC  ++AS+S+ T+ +KGK ++  LS+                    + E  + +S
Sbjct: 61  FEGEGCSISMASASMMTQAIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVS 120

Query: 130 LPPVKLHCSMLAEDAIKAAVKDYEAK 155
             P ++ C+ L+  A++  V   E  
Sbjct: 121 KFPARIKCATLSWKALEKGVAKEEGG 146

>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus} Length = 138

 Score =  144 bits (364), Expect = 5e-45
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 23/137 (16%)

Query: 32  LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
           LY E ++DHY +PRN G   +     G      P+CGD +++ + ++     I D  F+ 
Sbjct: 7   LYREILLDHYQSPRNFGVLPQATKQAG---GMNPSCGDQVEVMVLLEG--DTIADIRFQG 61

Query: 92  FGCGSAIASSSVATEWVKGKQMQEVLSI-------------KNTEIAKHLSLP-----PV 133
            GC  + AS+S+ TE VKGK++ E L +              +  +   L+L      P 
Sbjct: 62  QGCAISTASASLMTEAVKGKKVAEALELSRKFQAMVVEGAPPDPTLGDLLALQGVAKLPA 121

Query: 134 KLHCSMLAEDAIKAAVK 150
           ++ C+ LA  A++ A++
Sbjct: 122 RVKCATLAWHALEEALR 138

>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197

 Score = 40.4 bits (94), Expect = 8e-05
 Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 12/66 (18%)

Query: 44  PRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSV 103
            +  G    N   V T     P C      +I      G +V  C     CG  ++   V
Sbjct: 8   DKRAGRRGPNLNIVLT----CPECKVYPP-KIVERFSEGDVV--CAL---CGLVLSDKLV 57

Query: 104 AT--EW 107
            T  EW
Sbjct: 58  DTRSEW 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
3lvl_A	129	NIFU-like protein; protein-protein complex, struct	100.0
4eb5_C	153	NIFU protein (NIFU-1); scaffold, transferase-metal	100.0
2z7e_A	157	ISCU protein, NIFU-like protein; iron-sulfur clust	100.0
2qq4_A	138	Iron-sulfur cluster biosynthesis protein ISCU; zin	100.0
1xjs_A	147	NIFU-like protein; SR17, structure, autostructure,	100.0
1su0_B	159	NIFU like protein ISCU; structural genomics, BSGC	100.0
3g0m_A	141	Cysteine desulfuration protein SUFE; YNHA, csgid,	93.32
1ni7_A	155	ER75, hypothetical protein YGDK; RD-structural gen	88.15
3r07_C	91	Putative lipoate-protein ligase A subunit 2; adeny	86.23
2zkr_r	184	60S ribosomal protein L17; protein-RNA complex, 60	85.56
3j21_S	155	50S ribosomal protein L22P; archaea, archaeal, KIN	81.46

>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A

Probab=100.00  E-value=8.2e-43  Score=266.82  Aligned_cols=126  Identities=71%  Similarity=1.170  Sum_probs=118.3

Q ss_pred             hhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHcC
Q 030644           31 RLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKG  110 (174)
Q Consensus        31 ~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~G  110 (174)
                      ++|+++||+||+||+|.|.+++++.++++++.+||+|||+|+|||+|+++ |+|+|++|+++||++++||+|+|+++++|
T Consensus         2 ~~Y~~~Ildh~~~P~n~g~l~~~~~~~~~~~~~np~CGD~i~l~l~v~~~-~~I~d~~f~~~GCais~ASaS~~te~i~G   80 (129)
T 3lvl_A            2 SAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDE-GIIEDARFKTYGCGSAIASSSLVTEWVKG   80 (129)
T ss_dssp             -CCCHHHHHHHHSCSSBSCCCTTCSSEEEEEEECTTTCCEEEEEEEECSS-SCEEEEEEEEESCHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHhCCCCCCCCCCCCcceeEEEecCCCCCCEEEEEEEECCC-CeEEEEEEEecCCHHHHHHHHHHHHHHcC
Confidence            58999999999999999999998876667788999999999999999832 89999999999999999999999999999


Q ss_pred             CCHHHHHhhhHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHhcC
Q 030644          111 KQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRT  157 (174)
Q Consensus       111 Ktl~ea~~i~~~~i~e~L~~~~~R~~CA~L~~~AL~~AL~~~~~~~~  157 (174)
                      ||++||..|..+++.+.|++||+|++|++|+|+||++||.+|+.++.
T Consensus        81 kt~~ea~~i~~~~i~~~L~l~p~r~~Ca~La~~Al~~Al~~y~~k~~  127 (129)
T 3lvl_A           81 KSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKRE  127 (129)
T ss_dssp             CCHHHHHTCCHHHHHHHHTCCGGGGHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CcHHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999998753

>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*

Probab=100.00  E-value=3.1e-41  Score=264.88  Aligned_cols=126  Identities=48%  Similarity=0.829  Sum_probs=118.1

Q ss_pred             hHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHcCC
Q 030644           32 LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGK  111 (174)
Q Consensus        32 lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~GK  111 (174)
                      +|+++||+||+||+|+|.+++++.   ++..+||+|||+|+|||+|++  |+|+|++|+++||+++|||+|+|+++++||
T Consensus         1 lY~e~Ildh~~nPrn~G~l~~~d~---~~~~~nP~CGD~i~l~lkv~d--~~I~D~~F~g~GCais~ASaS~mtelv~GK   75 (153)
T 4eb5_C            1 MYSDKVFDHFQNPRNVGKIEDADG---VGTVGNPVCGDLMTIYIKVKD--NRIEDIKFQTFGCAAAIATSSMATEMAKGK   75 (153)
T ss_dssp             -CCHHHHHHHHSCSSBSCCSSCSE---EEEEECTTTCCEEEEEEEESS--SBEEEEEEEEESCHHHHHHHHHHHHHHTTC
T ss_pred             CcHHHHHHHHhCCCCCCCCCCCCe---EEEeCCCCCCCEEEEEEEecC--CeEEEEEEEEeCcHHHHHHHHHHHHHHcCC
Confidence            699999999999999999999873   567899999999999999987  899999999999999999999999999999


Q ss_pred             CHHHHHhhhHHHHHhhc-CCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 030644          112 QMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAA  162 (174)
Q Consensus       112 tl~ea~~i~~~~i~e~L-~~~~~R~~CA~L~~~AL~~AL~~~~~~~~~~~~~  162 (174)
                      |++||..|..+++.+.| ++||+|+||++|+|+||++||.+|..++...+..
T Consensus        76 tleEA~~i~~~~i~~~L~glpp~Ri~CA~La~~AL~~Al~~y~~k~~~~~~~  127 (153)
T 4eb5_C           76 TIEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRAIVDYFRKNGKIDKI  127 (153)
T ss_dssp             BHHHHTTCCHHHHHHHHTCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CHHHHHHhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhcCCccHH
Confidence            99999999999999999 6999999999999999999999999998776554

>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}

Probab=100.00  E-value=2.3e-40  Score=260.95  Aligned_cols=128  Identities=48%  Similarity=0.804  Sum_probs=118.1

Q ss_pred             hhhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHH
Q 030644           29 MPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWV  108 (174)
Q Consensus        29 ~~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~  108 (174)
                      +.++|+++||+||.||+|.|.+++++   ++++.+||+|||+|+|||+|++++|+|+|++|+++||+++|||+|+|++++
T Consensus         1 m~~lY~e~Ildh~~nPrn~G~l~~~d---~~~~~~np~CGD~i~l~lkvd~~~g~I~d~~F~~~GCais~ASaS~mte~v   77 (157)
T 2z7e_A            1 MSFEYNEKVLDHFLNPRNVGVLEDAN---GVGQCGNPACGAAMLFTIKVNPENDVIEDVRFKTFGCGSAIAVSSMLTEMV   77 (157)
T ss_dssp             CTTHHHHHHHHHHHSCSSBSCCTTCS---EEEEEEETTTTEEEEEEEEECTTTCBEEEEEEEEESCTTHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHhCCCCCCCCCCCC---eEEEeCCCCCCCEEEEEEEEecCCCeEEEEEEEecCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999887   456789999999999999995122899999999999999999999999999


Q ss_pred             cCCCHHHHHhhhHHHHHhhc-CCCCchhHHHHHHHHHHHHHHHHHHHhcCCC
Q 030644          109 KGKQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAKRTKP  159 (174)
Q Consensus       109 ~GKtl~ea~~i~~~~i~e~L-~~~~~R~~CA~L~~~AL~~AL~~~~~~~~~~  159 (174)
                      +|||++||..|..+++.+.| +++|.|++|++|+|+||++||.+|..++..+
T Consensus        78 ~Gkt~~EA~~i~~~~i~e~Lg~l~p~R~~Ca~La~~Al~~Al~~y~~k~~~~  129 (157)
T 2z7e_A           78 KGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKDYLMKQGRV  129 (157)
T ss_dssp             TTSBHHHHHHCCHHHHHHHHTCCCCSSCCTTCCHHHHHHHHHHHHHHTTTCH
T ss_pred             cCCcHHHHHHHHhccHHHHhcccCcchhHhHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999988889 5999999999999999999999999887665

>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=1.2e-38  Score=246.18  Aligned_cols=119  Identities=32%  Similarity=0.553  Sum_probs=107.2

Q ss_pred             chhhhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHH
Q 030644           27 AAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATE  106 (174)
Q Consensus        27 ~~~~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~e  106 (174)
                      +++.++|+++|++||+||+|+|.+++++   ++++.+||+|||+|+|||+|++  |+|+|++|+++||+++|||+|+|++
T Consensus         2 ~~l~~lY~~~Ildh~~nP~n~G~l~~~~---~~~~~~np~CGD~i~l~l~v~~--~~I~d~~f~~~GCais~ASaS~~te   76 (138)
T 2qq4_A            2 SVLDELYREILLDHYQSPRNFGVLPQAT---KQAGGMNPSCGDQVEVMVLLEG--DTIADIRFQGQGCAISTASASLMTE   76 (138)
T ss_dssp             CHHHHHHHHHHHHHHHSCTTBSCCTTCS---EEEEEECTTTCCEEEEEEEEET--TEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCCCCCCCCC---eEEeeCCCCCCCEEEEEEEECC--CEEEEEEEEecCCHHHHHHHHHHHH
Confidence            4678999999999999999999999887   3567899999999999999987  8999999999999999999999999


Q ss_pred             HHcCCCHHHHHhhhHHHHH---------------hhc---CCCCchhHHHHHHHHHHHHHHH
Q 030644          107 WVKGKQMQEVLSIKNTEIA---------------KHL---SLPPVKLHCSMLAEDAIKAAVK  150 (174)
Q Consensus       107 l~~GKtl~ea~~i~~~~i~---------------e~L---~~~~~R~~CA~L~~~AL~~AL~  150 (174)
                      +++|||++||.+|...++.               +.|   ..+|+|+||++|+|+||++||+
T Consensus        77 ~i~Gkt~~ea~~i~~~~~~ml~~~~~~~~~l~~l~~l~~v~~~p~R~~Ca~La~~Al~~Al~  138 (138)
T 2qq4_A           77 AVKGKKVAEALELSRKFQAMVVEGAPPDPTLGDLLALQGVAKLPARVKCATLAWHALEEALR  138 (138)
T ss_dssp             HHTTSBHHHHHHHHHHHHHHHTTCCCCCGGGGGGGGGGGGGGCGGGHHHHHHHHHHHHHHHC
T ss_pred             HHcCCcHHHHHHHHHHHHHHHhCCCCchhhhhHHhhccCcccCcchhhHHHHHHHHHHHHhC
Confidence            9999999999999988632               112   2579999999999999999973

>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A

Probab=100.00  E-value=6.4e-39  Score=250.09  Aligned_cols=123  Identities=33%  Similarity=0.557  Sum_probs=109.6

Q ss_pred             CchhhhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHH
Q 030644           26 VAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVAT  105 (174)
Q Consensus        26 ~~~~~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~  105 (174)
                      +++++++|+++|++||+||+|+|.+ +++   ++++.+||+|||+|+|||+|++  |+|+|++|+++||+++|||+|+|+
T Consensus         4 ~~~l~~lY~~~Ildh~~nP~n~G~l-~~~---~~~~~~np~CGD~i~l~lkv~~--~~I~d~~f~~~GCais~ASaS~mt   77 (147)
T 1xjs_A            4 NANLDTLYRQVIMDHYKNPRNKGVL-NDS---IVVDMNNPTCGDRIRLTMKLDG--DIVEDAKFEGEGCSISMASASMMT   77 (147)
T ss_dssp             CTTTHHHHHHHHHHHHHSCCCCCCC-CSS---EEEEEEETTTTEEEEEEEECCS--SBCCEEEEEEESSHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCC-CCC---eEEeecCCCCCCEEEEEEEECC--CeEEEEEEEecCCHHHHHHHHHHH
Confidence            3568999999999999999999999 887   3567889999999999999987  899999999999999999999999


Q ss_pred             HHHcCCCHHHHHhhhHHHHH----------hhc---------CCCCchhHHHHHHHHHHHHHHHHHHH
Q 030644          106 EWVKGKQMQEVLSIKNTEIA----------KHL---------SLPPVKLHCSMLAEDAIKAAVKDYEA  154 (174)
Q Consensus       106 el~~GKtl~ea~~i~~~~i~----------e~L---------~~~~~R~~CA~L~~~AL~~AL~~~~~  154 (174)
                      ++++|||++||..|...+..          +.|         ..+|+|+||++|+|+||++||++|+.
T Consensus        78 e~v~Gkt~~Ea~~i~~~~~~ml~~~~~~~~~~l~~l~~l~~v~~~p~R~~Ca~La~~Al~~Al~~~e~  145 (147)
T 1xjs_A           78 QAIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKFPARIKCATLSWKALEKGVAKEEG  145 (147)
T ss_dssp             HHHTTSBHHHHHHHHHHHHHHHHHCSCCSSCCCHHHHHHHHHTTSTTTHHHHHHHHHHHHHHSCSTTC
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHhCCCCCchhhhchhhhhcCcccCcchhHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999987531          112         35799999999999999999977653

>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2

Probab=100.00  E-value=1.4e-37  Score=245.45  Aligned_cols=119  Identities=35%  Similarity=0.544  Sum_probs=106.0

Q ss_pred             hhhhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHH
Q 030644           28 AMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEW  107 (174)
Q Consensus        28 ~~~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el  107 (174)
                      +++++|+++|++||+||+|+|.+ +++.   +++.+||+|||+|+|||+|++  |+|+|++|+++||+++|||+|+|+++
T Consensus         5 ~l~~lY~~~Ildh~~nP~n~G~l-~~~~---~~~~~np~CGD~i~l~lkv~~--g~I~d~~F~~~GCais~ASaS~mte~   78 (159)
T 1su0_B            5 KLNHLYMAVVADHSKRPHHHGQL-DGVE---AVQLNNPTCGDVISLTVKFDE--DKIEDIAFAGNGCTISTASSSMMTDA   78 (159)
T ss_dssp             -CCHHHHHHHHHHHHSCSSBSCC-TTCC---CEEEECSSSCCEEEEEEEESS--SSEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCCCCC-CCCe---EEeecCCCCCCEEEEEEEECC--CEEEEEEEEecCCHHHHHHHHHHHHH
Confidence            57899999999999999999999 8873   457789999999999999987  89999999999999999999999999


Q ss_pred             HcCCCHHHHHhhhHHHHH----------hhc---------CCCCchhHHHHHHHHHHHHHHHHH
Q 030644          108 VKGKQMQEVLSIKNTEIA----------KHL---------SLPPVKLHCSMLAEDAIKAAVKDY  152 (174)
Q Consensus       108 ~~GKtl~ea~~i~~~~i~----------e~L---------~~~~~R~~CA~L~~~AL~~AL~~~  152 (174)
                      ++|||++||..|...+..          +.|         ..+|+|+||++|+|+||++||.++
T Consensus        79 v~Gkt~~Ea~~i~~~f~~ml~~~~~~~~~~L~~l~~l~gv~~~p~R~~Ca~La~~Al~~Al~~~  142 (159)
T 1su0_B           79 VIGKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQRIKCSTLAWNALKEAIKRS  142 (159)
T ss_dssp             HTTCCHHHHHHHHHHHHHHTTTCCCGGGGGGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HcCCcHHHHHHHHHHHHHHHhcCCCCchhhhchhhhhcCcccCcchhHHHHHHHHHHHHHHHhh
Confidence            999999999999987531          223         246999999999999999999764

>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A

Probab=93.32  E-value=1.7  Score=32.80  Aligned_cols=108  Identities=9%  Similarity=0.049  Sum_probs=71.9

Q ss_pred             hhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCc-hhHHHHHHHHHHHH
Q 030644           30 PRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGC-GSAIASSSVATEWV  108 (174)
Q Consensus        30 ~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GC-ais~ASasil~el~  108 (174)
                      |+.--+.|+++.+.-.-   +++... .  -...-+-|-..|=|...++++ |+   +.|.++.= .|...-.+++...+
T Consensus        23 we~Ry~~LI~lgk~Lp~---lpe~~k-~--~~~~V~GCqS~VWl~~~~~~~-g~---l~f~adSDA~IvkGl~alL~~~~   92 (141)
T 3g0m_A           23 WEEKYLYIIELGQRLAE---LNPQDR-N--PQNTIHGCQSQVWIVMRRNAN-GI---IELQGDSDAAIVKGLMAVVFILY   92 (141)
T ss_dssp             HHHHHHHHHHHHHTSCC---CCGGGC-S--GGGBCCSSSSCEEEEEEECTT-SB---EEEEEEESSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCC---CCHHHc-C--ccCcCCCCccCeeEEEEEcCC-CE---EEEEecCccHHHHHHHHHHHHHH
Confidence            44444567888876443   332211 0  012245699999888888543 64   78887654 57788899999999


Q ss_pred             cCCCHHHHHhhhHHHHHhhcC----CCCchhHHHHHHHHHHHHHHHH
Q 030644          109 KGKQMQEVLSIKNTEIAKHLS----LPPVKLHCSMLAEDAIKAAVKD  151 (174)
Q Consensus       109 ~GKtl~ea~~i~~~~i~e~L~----~~~~R~~CA~L~~~AL~~AL~~  151 (174)
                      .|+|.+|+..++..++.+.||    +.|.|..=    +.++-+.++.
T Consensus        93 ~G~tp~eIl~~d~~~f~~~lGL~~~LSpsR~nG----l~am~~~ik~  135 (141)
T 3g0m_A           93 HQMTAQDIVHFDVRPWFEKMALAQHLTPSRSQG----LEAMIRAIRA  135 (141)
T ss_dssp             TTCBHHHHHHCCCHHHHHHHTCGGGSCHHHHHH----HHHHHHHHHH
T ss_pred             cCCCHHHHHhCCHHHHHHHcCchhhcCchHHHH----HHHHHHHHHH
Confidence            999999999999855556665    67888774    4444444443

>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1

Probab=88.15  E-value=1.7  Score=33.33  Aligned_cols=109  Identities=15%  Similarity=0.055  Sum_probs=69.6

Q ss_pred             hhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCc-hhHHHHHHHHHHHH
Q 030644           30 PRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGC-GSAIASSSVATEWV  108 (174)
Q Consensus        30 ~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GC-ais~ASasil~el~  108 (174)
                      |+---+.|+++.+.-.   .+++.. ..  -...-+-|-..|=|+..++++ |   .+.|.++.= .|...-++++...+
T Consensus        30 wedRy~~LI~lgk~Lp---~lpe~~-k~--~~~~V~GCqS~VWl~~~~~~d-g---~l~F~adSDA~IvkGL~AlL~~~~   99 (155)
T 1ni7_A           30 WEDKYRQLIMLGKQLP---ALPDEL-KA--QAKEIAGCENRVWLGYTVAEN-G---KMHFFGDSEGRIVRGLLAVLLTAV   99 (155)
T ss_dssp             HHHHHHHHHHHHHHSC---CCCHHH-HH--HSEEECSSSSCEEEECCCCSS-S---CCCCEEEESSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhCC---CCChHH-cC--ccCcCCCCccCeeEEEEEcCC-C---EEEEeeCCccHHHHHHHHHHHHHH
Confidence            4444445567766443   233221 10  012235699988777665332 5   577887654 57788899999999


Q ss_pred             cCCCHHHHHhhhHHHHHhhcC----CCCchhHHHHHHHHHHHHHHHHH
Q 030644          109 KGKQMQEVLSIKNTEIAKHLS----LPPVKLHCSMLAEDAIKAAVKDY  152 (174)
Q Consensus       109 ~GKtl~ea~~i~~~~i~e~L~----~~~~R~~CA~L~~~AL~~AL~~~  152 (174)
                      .|+|.+|+..++.+++.+.||    +.|.|..=    +.++-+.++.+
T Consensus       100 ~G~tp~eIl~~d~~~f~~~lGL~~~LSpsR~NG----l~am~~~ik~~  143 (155)
T 1ni7_A          100 EGKTAAELQAQSPLALFDELGLRAQLSASRSQG----LNALSEAIIAA  143 (155)
T ss_dssp             TTCCHHHHHHSCTHHHHHHHTSSSSSCHHHHHH----HHHHHHHHHHH
T ss_pred             cCCCHHHHHhCCHHHHHHHcCchhhcCchHHHH----HHHHHHHHHHH
Confidence            999999999999975556665    67888874    45554444443

>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}

Probab=86.23  E-value=0.91  Score=31.63  Aligned_cols=66  Identities=12%  Similarity=0.146  Sum_probs=45.2

Q ss_pred             CCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHcCCCHHHHHhhhHHHHH---hhcCCCCchh
Q 030644           67 CGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIA---KHLSLPPVKL  135 (174)
Q Consensus        67 CGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~GKtl~ea~~i~~~~i~---e~L~~~~~R~  135 (174)
                      .| .|++++.|++  |+|+++++.|+==....-.-.-+.+.++|.+.+++.+...+.+.   ...|+.++.+
T Consensus        16 ~G-~v~v~l~v~~--G~I~~vki~GDFf~~p~~~i~~le~~L~G~~~~~i~~~l~~~~~~~~~~~g~~~edi   84 (91)
T 3r07_C           16 KG-LIRVTLDLDG--NRIKDIHISGDFFMFPEDSINRLEDMLRGSSIEKINDIIRDFYNQGVITPGVEPEDF   84 (91)
T ss_dssp             SC-EEEEEEEEET--TEEEEEEEEEEBCCBSTTHHHHHHHHHTTSBTTSHHHHHHHHHTTTCBCTTCCTTHH
T ss_pred             Cc-EEEEEEEEcC--CEEEEEEEEcccCCCcchhHHHHHHHHCCCCHHHHHHHHHhhhccCceEcCCCHHHH
Confidence            45 9999999988  99999999986332211234667888999998866666665432   1235655544

>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=85.56  E-value=2.5  Score=33.39  Aligned_cols=69  Identities=9%  Similarity=0.029  Sum_probs=50.7

Q ss_pred             cCchhHHHHHHHHHHHHcCCCHHHHHhhhHHHHHhhcC--------------------CCC--chhHHHHHHHHHHHHHH
Q 030644           92 FGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLS--------------------LPP--VKLHCSMLAEDAIKAAV  149 (174)
Q Consensus        92 ~GCais~ASasil~el~~GKtl~ea~~i~~~~i~e~L~--------------------~~~--~R~~CA~L~~~AL~~AL  149 (174)
                      .---++-==+-.++.+|.|+++++|..+..+.+...--                    ...  .-.+++....+.|+.|.
T Consensus        20 ~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPF~r~~~gvg~~~q~~~~~~~~GR~PkKaa~~ilklLksA~   99 (184)
T 2zkr_r           20 SNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAE   99 (184)
T ss_dssp             CSCCSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCCSTTSCSCSBEECCHHHHHHHHHHHHHHH
T ss_pred             cCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeccCCCcccccccccccccCCCcHHHHHHHHHHHHHHH
Confidence            33344444567889999999999999999987654321                    111  34588999999999999


Q ss_pred             HHHHHhcCCCC
Q 030644          150 KDYEAKRTKPS  160 (174)
Q Consensus       150 ~~~~~~~~~~~  160 (174)
                      .+.+.+..++|
T Consensus       100 aNAe~kglD~d  110 (184)
T 2zkr_r          100 SNAELKGLDVD  110 (184)
T ss_dssp             HHHHHHTSCTT
T ss_pred             HHHHHcCCChh
Confidence            99987755554

>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=81.46  E-value=3.8  Score=31.39  Aligned_cols=61  Identities=13%  Similarity=0.195  Sum_probs=45.9

Q ss_pred             HHHHHHHHHcCCCHHHHHhhhHHHHHhhcCCC-----------------C--chhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 030644          100 SSSVATEWVKGKQMQEVLSIKNTEIAKHLSLP-----------------P--VKLHCSMLAEDAIKAAVKDYEAKRTKPS  160 (174)
Q Consensus       100 Sasil~el~~GKtl~ea~~i~~~~i~e~L~~~-----------------~--~R~~CA~L~~~AL~~AL~~~~~~~~~~~  160 (174)
                      =+-.++.+|+|+++++|..+..+.+...--.|                 .  .-.+++....+.|+.|..+.+.+..++|
T Consensus        31 k~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~~~~~gr~PkKaa~~ilklL~sA~aNAe~kgld~d  110 (155)
T 3j21_S           31 LAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGHKPGKGFGPGRYPVKVAKAIKKVLLNVKNNAVQKGLDPD  110 (155)
T ss_dssp             HHHHHHHHHTTCBHHHHHHHHHHHHHTCSCEECCSSCTTCCBCCSSSCSBEECCHHHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHHHhcccceeeeeecCCCccccccCCCcCcCcHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence            35678999999999999999998665432111                 1  2357899999999999999887655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d1wfza_	130	d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU	2e-49
d1r9pa_	134	d.224.1.2 (A:) NifU-like protein HI0377 {Haemophil	1e-48
d1xjsa_	147	d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 142	3e-36
d1su0b_	136	d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus	3e-30

>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]} Length = 130

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: Iron-sulfur cluster protein U (IscU)
species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]

 Score =  153 bits (389), Expect = 2e-49
 Identities = 91/121 (75%), Positives = 103/121 (85%), Gaps = 1/121 (0%)

Query: 43  NPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSS 102
           NPRNVGS +K    VGTGLVGAPACGDVMKLQI+VDE+ G+IVDA FKTFGCGSAIASSS
Sbjct: 9   NPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEK-GKIVDARFKTFGCGSAIASSS 67

Query: 103 VATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAA 162
           +ATEWVKGK ++E L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K+   S  
Sbjct: 68  LATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQESKSGP 127

Query: 163 S 163
           S
Sbjct: 128 S 128

>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]} Length = 134

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: NifU-like protein HI0377
species: Haemophilus influenzae [TaxId: 727]

 Score =  151 bits (383), Expect = 1e-48
 Identities = 88/125 (70%), Positives = 106/125 (84%), Gaps = 1/125 (0%)

Query: 32  LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
            Y E VIDHY NPRNVGS +K D+ VGTG+VGAPACGDVM+LQIKVD+  G I DA FKT
Sbjct: 2   AYSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVDD-NGIIEDAKFKT 60

Query: 92  FGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKD 151
           +GCGSAIASSS+ TEWVKGK ++E  +IKN++IA+ L LPPVK+HCS+LAEDAIKAA+ D
Sbjct: 61  YGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIAD 120

Query: 152 YEAKR 156
           Y+AK+
Sbjct: 121 YKAKQ 125

>d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]} Length = 147

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: NifU
species: Bacillus subtilis [TaxId: 1423]

 Score =  120 bits (303), Expect = 3e-36
 Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 25/146 (17%)

Query: 29  MPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDAC 88
           +  LY + ++DHY NPRN G    +        +  P CGD ++L +K+D     + DA 
Sbjct: 7   LDTLYRQVIMDHYKNPRNKGVLNDSI----VVDMNNPTCGDRIRLTMKLDG--DIVEDAK 60

Query: 89  FKTFGCGSAIASSSVATEWVKGKQMQEVLS-------------------IKNTEIAKHLS 129
           F+  GC  ++AS+S+ T+ +KGK ++  LS                   + + E  + +S
Sbjct: 61  FEGEGCSISMASASMMTQAIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVS 120

Query: 130 LPPVKLHCSMLAEDAIKAAVKDYEAK 155
             P ++ C+ L+  A++  V   E  
Sbjct: 121 KFPARIKCATLSWKALEKGVAKEEGG 146

>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]} Length = 136

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: IscU homolog SPy0289
species: Streptococcus pyogenes [TaxId: 1314]

 Score =  105 bits (262), Expect = 3e-30
 Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 25/138 (18%)

Query: 32  LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
           LY   V DH   P + G  +  +A      +  P CGDV+ L +K DE   +I D  F  
Sbjct: 4   LYMAVVADHSKRPHHHGQLDGVEAVQ----LNNPTCGDVISLTVKFDE--DKIEDIAFAG 57

Query: 92  FGCGSAIASSSVATEWVKGKQMQEVLS-------------------IKNTEIAKHLSLPP 132
            GC  + ASSS+ T+ V GK  +E L+                   +   E+   ++  P
Sbjct: 58  NGCTISTASSSMMTDAVIGKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFP 117

Query: 133 VKLHCSMLAEDAIKAAVK 150
            ++ CS LA +A+K A+K
Sbjct: 118 QRIKCSTLAWNALKEAIK 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1r9pa_	134	NifU-like protein HI0377 {Haemophilus influenzae [	100.0
d1wfza_	130	Iron-sulfur cluster protein U (IscU) {Mouse (Mus m	100.0
d1xjsa_	147	NifU {Bacillus subtilis [TaxId: 1423]}	100.0
d1su0b_	136	IscU homolog SPy0289 {Streptococcus pyogenes [TaxI	100.0
d1mzga_	144	SufE (YhnA) {Escherichia coli [TaxId: 562]}	95.39
d1ni7a_	149	Hypothetical protein YgdK {Escherichia coli [TaxId	92.28
d1x2ga1	91	Two-domain LplA, C-terminal domain {Escherichia co	82.25

>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: NifU-like protein HI0377
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=1.3e-41  Score=259.53  Aligned_cols=129  Identities=68%  Similarity=1.096  Sum_probs=120.9

Q ss_pred             hHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHcCC
Q 030644           32 LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGK  111 (174)
Q Consensus        32 lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~GK  111 (174)
                      +|+++||+||+||+|.|.+++++..++.+..+||+|||.|+||++++++ ++|+|++|+++||++|+||||+|+++++||
T Consensus         2 ~Y~e~Ildh~~~Prn~g~l~~~d~~~~~~~~~np~CGD~v~i~l~i~~~-~~I~di~f~~~GCais~Asas~~~e~i~Gk   80 (134)
T d1r9pa_           2 AYSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVDDN-GIIEDAKFKTYGCGSAIASSSLITEWVKGK   80 (134)
T ss_dssp             CSCCSCCCSCSCCCCCSSSSSCCSSEEEEEEEETTTTEEEEEEEEECSS-SBEEEEEEEEESSSSHHHHHHHHHHHSSSS
T ss_pred             CcHHHHHHHhhCcCCCCCCCCCCcchhhhccCCCCcccEEEEEEEEcCC-ceEEEEEEEeccCcccHhHHHHHHHHHHhC
Confidence            6999999999999999999999876666677899999999999999764 689999999999999999999999999999


Q ss_pred             CHHHHHhhhHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 030644          112 QMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSA  161 (174)
Q Consensus       112 tl~ea~~i~~~~i~e~L~~~~~R~~CA~L~~~AL~~AL~~~~~~~~~~~~  161 (174)
                      |++||..|+++++.+.|+++|+|++|++|+|+||+++|.+|+.+++-...
T Consensus        81 t~~ea~~i~~~~i~e~l~~~p~r~~Ca~L~~~al~~al~~y~~k~g~~~~  130 (134)
T d1r9pa_          81 SLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAKQGLEHH  130 (134)
T ss_dssp             BHHHHTTSHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHHTTTCCCS
T ss_pred             CHHHHHHhcchHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence            99999999999999999999999999999999999999999999876543

>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: Iron-sulfur cluster protein U (IscU)
species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]

Probab=100.00  E-value=1.1e-38  Score=242.62  Aligned_cols=121  Identities=75%  Similarity=1.152  Sum_probs=113.7

Q ss_pred             hCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHcCCCHHHHHhhhH
Q 030644           42 NNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKN  121 (174)
Q Consensus        42 ~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~GKtl~ea~~i~~  121 (174)
                      +||||+|.|++++..++.++.+||+|||.|+|||+|+++ ++|++++|+++||++|+||+|+|+++++|||++|+..|+.
T Consensus         8 kNPrn~G~l~~~d~~~~~g~~gNP~CGD~i~i~l~v~~~-~~I~di~F~~~GC~is~AsaS~~tel~~Gkt~~ea~~i~~   86 (130)
T d1wfza_           8 ENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEK-GKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKN   86 (130)
T ss_dssp             SCCSSCCCCCTTCSSEEEEEEEETTTTEEEEEEEEECSS-SBEEEEEEECCSCHHHHHHHHHHHHHHTTSBHHHHHHCCH
T ss_pred             CCCCCCcCCCCCCcccCccccCCCCcCcEEEEEEEecCC-CeEEEEEEEeeCCchhHHHHHHHHHHHhccCHHHHHhcCc
Confidence            799999999999977777788999999999999999653 7999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCccc
Q 030644          122 TEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAAS  163 (174)
Q Consensus       122 ~~i~e~L~~~~~R~~CA~L~~~AL~~AL~~~~~~~~~~~~~~  163 (174)
                      +++.+.|++||.|+||++|+|+||++||.+|+.++...++.+
T Consensus        87 ~~i~~~l~l~p~R~~CA~La~~aL~~Al~~y~~k~~~~~~p~  128 (130)
T d1wfza_          87 TDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQESKSGPS  128 (130)
T ss_dssp             HHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHCSSCSC
T ss_pred             HHHHHHcCCCcchhhHHHHHHHHHHHHHHHHHHhccCccCCC
Confidence            999999999999999999999999999999999888777654

>d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: NifU
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1.8e-37  Score=239.45  Aligned_cols=125  Identities=31%  Similarity=0.528  Sum_probs=110.2

Q ss_pred             cCchhhhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHH
Q 030644           25 QVAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVA  104 (174)
Q Consensus        25 ~~~~~~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil  104 (174)
                      ..++++++|+++|++||+||+|.|.+++++    .++.+||+|||+|+||+++++  ++|++++|++.||++|+||||+|
T Consensus         3 ~~~~~~~LY~e~Ildh~~nP~n~g~l~~~~----~~~~~Np~CGD~i~i~l~i~~--~~I~d~~f~~~GCai~~ASasil   76 (147)
T d1xjsa_           3 FNANLDTLYRQVIMDHYKNPRNKGVLNDSI----VVDMNNPTCGDRIRLTMKLDG--DIVEDAKFEGEGCSISMASASMM   76 (147)
T ss_dssp             CCTTTHHHHHHHHHHHHHSCCCCCCCCSSE----EEEEEETTTTEEEEEEEECCS--SBCCEEEEEEESSHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCCCCCCCCCCCC----EeecCCCCCCcEEEEEEEEcC--CceEEEEeeecccHHHHHHHHHH
Confidence            457889999999999999999999997532    235689999999999999988  89999999999999999999999


Q ss_pred             HHHHcCCCHHHHHhhhHHHHHh-------------------hcCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 030644          105 TEWVKGKQMQEVLSIKNTEIAK-------------------HLSLPPVKLHCSMLAEDAIKAAVKDYEAK  155 (174)
Q Consensus       105 ~el~~GKtl~ea~~i~~~~i~e-------------------~L~~~~~R~~CA~L~~~AL~~AL~~~~~~  155 (174)
                      +++++|||++++..+.+.+...                   -+..+|+|++|++|||+||++||++|+.+
T Consensus        77 ~e~~~gk~~~~a~~l~~~~~~~l~~~~~~~~~~~~~l~~l~~v~~~p~R~~Ca~L~~~Al~~al~~~~~~  146 (147)
T d1xjsa_          77 TQAIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKFPARIKCATLSWKALEKGVAKEEGG  146 (147)
T ss_dssp             HHHHTTSBHHHHHHHHHHHHHHHHHCSCCSSCCCHHHHHHHHHTTSTTTHHHHHHHHHHHHHHSCSTTCC
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHhcCCCCchhhhhHHHHhhCcCcCcchhHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999864320                   11468999999999999999999988754

>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: IscU homolog SPy0289
species: Streptococcus pyogenes [TaxId: 1314]

Probab=100.00  E-value=9.6e-37  Score=232.48  Aligned_cols=116  Identities=37%  Similarity=0.583  Sum_probs=103.5

Q ss_pred             hhhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHH
Q 030644           29 MPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWV  108 (174)
Q Consensus        29 ~~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~  108 (174)
                      ++++|+++|||||+||+|+|.+++++.    ++.+||+|||+|+||+++++  ++|+|++|+++||++|+||||+|++++
T Consensus         1 l~~lY~~~Ildh~~nP~n~g~l~~~~~----~~~~Np~CGD~i~i~l~i~~--~~I~di~f~~~GCai~~ASasil~e~i   74 (136)
T d1su0b_           1 LNHLYMAVVADHSKRPHHHGQLDGVEA----VQLNNPTCGDVISLTVKFDE--DKIEDIAFAGNGCTISTASSSMMTDAV   74 (136)
T ss_dssp             CCHHHHHHHHHHHHSCSSBSCCTTCCC----EEEECSSSCCEEEEEEEESS--SSEEEEEEEEECCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCCCCCCCCCCe----eeecCCCCCCEEEEEEEEcC--CeeeEEEEEeccCHHHHHHHHHHHHHH
Confidence            468999999999999999999988752    35689999999999999998  899999999999999999999999999


Q ss_pred             cCCCHHHHHhhhHHHHH----------hh------c---CCCCchhHHHHHHHHHHHHHHH
Q 030644          109 KGKQMQEVLSIKNTEIA----------KH------L---SLPPVKLHCSMLAEDAIKAAVK  150 (174)
Q Consensus       109 ~GKtl~ea~~i~~~~i~----------e~------L---~~~~~R~~CA~L~~~AL~~AL~  150 (174)
                      +||+++|+..+.+.+..          +.      |   ..+|+|++|++|||+||++||+
T Consensus        75 ~gk~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~v~~~p~R~~Ca~L~~~Al~~al~  135 (136)
T d1su0b_          75 IGKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQRIKCSTLAWNALKEAIK  135 (136)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTTCCCGGGGGGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHT
T ss_pred             hCCCHHHHHHHHHHHHHHHhcccCCchhhhhHHHHhhCCCcCcchhHHHHHHHHHHHHHHh
Confidence            99999999999987532          11      1   2578999999999999999985

>d1mzga_ d.224.1.1 (A:) SufE (YhnA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: SufE-like
domain: SufE (YhnA)
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.14  Score=37.17  Aligned_cols=115  Identities=10%  Similarity=0.070  Sum_probs=75.0

Q ss_pred             hhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHc
Q 030644           30 PRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVK  109 (174)
Q Consensus        30 ~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~  109 (174)
                      |+---+.|+++.++-..   +++...+   -...-+-|-..|=|....+++ | +..++...+ -.|...-++++++.+.
T Consensus        18 we~ry~~Li~lgk~lp~---lp~~~k~---~~n~V~GCqS~vWl~~~~~~~-~-~~~f~~dSd-a~IvkGl~ail~~~~~   88 (144)
T d1mzga_          18 WEEKYLYIIELGQRLPE---LRDEDRS---PQNSIQGCQSQVWIVMRQNAQ-G-IIELQGDSD-AAIVKGLIAVVFILYD   88 (144)
T ss_dssp             HHHHHHHHHHHHHHSCC---CCTTTSS---GGGEECSSSSCEEEEEEECSS-S-CEEEEEEES-SHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCC---CChHHhh---hhheeccceeeEEEeeeeccC-C-ceEEEeeCc-hHHHHHHHHHHHHHHC
Confidence            44444556788865433   3332211   011234599988777777652 4 333333333 4788899999999999


Q ss_pred             CCCHHHHHhhhHHHHHhhcC----CCCchhHHHHHHHHHHHHHHHHHH
Q 030644          110 GKQMQEVLSIKNTEIAKHLS----LPPVKLHCSMLAEDAIKAAVKDYE  153 (174)
Q Consensus       110 GKtl~ea~~i~~~~i~e~L~----~~~~R~~CA~L~~~AL~~AL~~~~  153 (174)
                      |+|.+|+..++..++.+.+|    +.|+|..=..-.++.+++....|.
T Consensus        89 g~t~~eI~~~d~~~~~~~lgL~~~Ls~sR~NGl~~mi~~ik~~A~~~~  136 (144)
T d1mzga_          89 QMTPQDIVNFDVRPWFEKMALTQHLTPSRSQGLEAMIRAIRAKAAALS  136 (144)
T ss_dssp             TCCHHHHHHCCCHHHHHHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHhcChHHHHHHcCCccccCccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999997654445555    789999877777777776666654

>d1ni7a_ d.224.1.1 (A:) Hypothetical protein YgdK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: SufE-like
domain: Hypothetical protein YgdK
species: Escherichia coli [TaxId: 562]

Probab=92.28  E-value=0.23  Score=36.19  Aligned_cols=113  Identities=17%  Similarity=0.060  Sum_probs=73.7

Q ss_pred             hhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeee-cCchhHHHHHHHHHHHH
Q 030644           30 PRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT-FGCGSAIASSSVATEWV  108 (174)
Q Consensus        30 ~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~-~GCais~ASasil~el~  108 (174)
                      |+---+.|+++.++-..   +++... .  -...-.-|-..|=|...++++ |   .+.|.+ .--.|...-++++++.+
T Consensus        30 weery~~Li~lgk~l~~---l~e~~k-~--d~~~V~GCqS~vWl~~~~~~~-g---~~~f~adSDa~IvkGl~~iL~~~~   99 (149)
T d1ni7a_          30 WEDKYRQLIMLGKQLPA---LPDELK-A--QAKEIAGCENRVWLGYTVAEN-G---KMHFFGDSEGRIVRGLLAVLLTAV   99 (149)
T ss_dssp             HHHHHHHHHHHHHHSCC---CCHHHH-H--HSEEECSSSSCEEEECCCCSS-S---CCCCEEEESSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCC---CChHHh-c--hhheeccceeEEEEEEEEccC-C---EEEEEecccHHHHHHHHHHHHHHH
Confidence            34444567788765543   332110 0  011234599987777766432 5   355666 33468888999999999


Q ss_pred             cCCCHHHHHhhhHHHHHhhcC----CCCchhHHHHHHHHHHHHHHHHH
Q 030644          109 KGKQMQEVLSIKNTEIAKHLS----LPPVKLHCSMLAEDAIKAAVKDY  152 (174)
Q Consensus       109 ~GKtl~ea~~i~~~~i~e~L~----~~~~R~~CA~L~~~AL~~AL~~~  152 (174)
                      .|+|.+|+..++..++.+.+|    +.+.|..=..-.++.+++..+++
T Consensus       100 sg~t~~eI~~~~~~~~~~~lGL~~~Ls~sR~NGl~~mi~~Ik~~a~~~  147 (149)
T d1ni7a_         100 EGKTAAELQAQSPLALFDELGLRAQLSASRSQGLNALSEAIIAATKQV  147 (149)
T ss_dssp             TTCCHHHHHHSCTHHHHHHHTSSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHhcCHHHHHHHCCChhhCChhHHHHHHHHHHHHHHHHHHH
Confidence            999999999998866655654    67889887666666666666554

>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: SP1160 C-terminal domain-like
domain: Two-domain LplA, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.25  E-value=1.1  Score=29.58  Aligned_cols=43  Identities=19%  Similarity=0.112  Sum_probs=33.5

Q ss_pred             CCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHcCCCH
Q 030644           67 CGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQM  113 (174)
Q Consensus        67 CGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~GKtl  113 (174)
                      -+-.|++++.|++  |+|+++++.|+-  ....--+.+.+.++|.+.
T Consensus        14 ~~G~ve~~l~V~~--G~I~~~~i~gDf--l~~~~i~~le~~L~G~~y   56 (91)
T d1x2ga1          14 TWGGVELHFDVEK--GHITRAQVFTDS--LNPAPLEALAGRLQGCLY   56 (91)
T ss_dssp             TTEEEEEEEEEET--TEEEEEEEEECC--SCCHHHHHHHHHHTTCBS
T ss_pred             CCceEEEEEEEeC--CEEEEEEEEcCC--CCcHHHHHHHHHHcCCCc
Confidence            3567999999999  999999999873  223456677888888765