Citrus Sinensis ID: 030651

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MAKPRYSRFPTRKSSSSTLILTLLIMFTFAILILLAFGILSMPSSSGDSRKANDLSSIVRKSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLGMQFKFSLFFFYVLKK
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHccccccccccccccEEEEEcccccEEEEcccccHHHHHHHHHHHcccccccEEEccccccccccccEEcccccccccccHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHcccccccccccccccccccEcccccccccccccccccEEEEEcccEEEEEcccccHHHHHHHHHHHcHHccccEEEEccccccEccccEcccccHccccccHHHHHHHHHHHHHHcccccccccEEEEEEccccc
Coil and Loop (DISEMBL)
makprysrfptrkssssTLILTLLIMFTFAILILLAFGIlsmpsssgdsrkandLSSIVRKSmersegdegrAEQWVEVISWEPRAFVYHNFLSKEECEYLINLatphmrkstvvdsdtgkskdsrvrtssgtflarGRDKIIRDIEKRIadftffplgmqfkFSLFFFYVLKK
Flexible Loop (DISEMBL)
makprysrfptrksssstLILTLLIMFTFAILILLAFGILSMpsssgdsrkandlSSIVRKsmersegdegraeqWVEVISWEPRAFVYHNFLSKEECEYLINLatphmrkstvvdsdtgkskdsrvrtssgtflargrdkiIRDIEKRIADFTFFPLGMQFKFSLFFFYVLKK
Low Complexity Region (SEG)
MAKPRYSRFPTRKsssstliltllimftfailillafgilsMPSSSGDSRKANDLSSIVRKSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLArgrdkiirdiekriADFTFFPLGMQFKFSLFFFYVLKK
Disordered region (IsUnstruct)
*****************TLILTLLIMFTFAILILLAFGIL**********************************QWVEVISWEPRAFVYHNFLSKEECEYLINLATP**************************FLARGRDKIIRDIEKRIADFTFFPLGMQFKFSLFFFYVL**
Disordered Region (DISOPRED)
******************LILTLLIMFTFAILILLAFGIL*******************************RAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHM***************SRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLGMQFKFSLFFFYV***
Disordered Region (DISEMBL)
***************SSTLILTLLIMFTFAILILLAFGILSMP************SSIVR*************EQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMR*********************GTFLARGRDKIIRDIEKRIADFTFFPLGMQFKFSLFFFYVLKK
Disordered Region (DISPRO)
**************SSSTLILTLLIMFTFAILILLAFGILSMP***************VRK********EGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLGMQFKFSLFFFYV***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKPRYSRFPTRKSSSSTLILTLLIMFTFAILILLAFGILSMPSSSGDSRKANDLSSIVRKSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLGMQFKFSLFFFYVLKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
Q20065	539	Prolyl 4-hydroxylase subu	yes	no	0.448	0.144	0.320	2e-07
P54001	534	Prolyl 4-hydroxylase subu	yes	no	0.419	0.136	0.337	5e-06
Q60715	534	Prolyl 4-hydroxylase subu	yes	no	0.413	0.134	0.305	0.0001
Q1RMU3	534	Prolyl 4-hydroxylase subu	yes	no	0.413	0.134	0.291	0.0004
Q5RAG8	534	Prolyl 4-hydroxylase subu	yes	no	0.413	0.134	0.291	0.0004
P13674	534	Prolyl 4-hydroxylase subu	yes	no	0.413	0.134	0.291	0.0004

>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 46/78 (58%)

Query: 77  VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLA 136
           VE++ ++P A ++ N +   E E +  LA+P ++++TV +S TG+ + +  R S   +L 
Sbjct: 318 VEILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLK 377

Query: 137 RGRDKIIRDIEKRIADFT 154
              D +I  + +RI DFT
Sbjct: 378 GDLDPVIDRVNRRIEDFT 395

Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Caenorhabditis elegans (taxid: 6239)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2

>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2

 Score = 50.8 bits (120), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 82  WE-PRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRD 140
           W+ PR   +H+ +S  E E + +LA P + ++TV D +TGK   ++ R S   +L+   D
Sbjct: 332 WDKPRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRVSKSAWLSGYED 391

Query: 141 KIIRDIEKRIADFT 154
            ++  I  RI D T
Sbjct: 392 PVVSRINMRIQDLT 405

Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: 2

>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 38/72 (52%)

Query: 83  EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKI 142
           +PR   +H+ +S  E E + +LA P +R++T+ +  TG  +    R S   +L+   D +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPVTGALETVHYRISKSAWLSGYEDPV 393

Query: 143 IRDIEKRIADFT 154
           +  I  RI D T
Sbjct: 394 VSRINMRIQDLT 405

Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: 2

>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 38/72 (52%)

Query: 83  EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKI 142
           +PR   +H+ +S  E E + +LA P +R++T+ +  TG  +    R S   +L+   + +
Sbjct: 334 KPRIIRFHDIISDAEIEVVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPV 393

Query: 143 IRDIEKRIADFT 154
           +  I  RI D T
Sbjct: 394 VSRINMRIQDLT 405

Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: 2

>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 38/72 (52%)

Query: 83  EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKI 142
           +PR   +H+ +S  E E + +LA P +R++T+ +  TG  +    R S   +L+   + +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPV 393

Query: 143 IRDIEKRIADFT 154
           +  I  RI D T
Sbjct: 394 VSRINMRIQDLT 405

Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: 2

>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 38/72 (52%)

Query: 83  EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKI 142
           +PR   +H+ +S  E E + +LA P +R++T+ +  TG  +    R S   +L+   + +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPV 393

Query: 143 IRDIEKRIADFT 154
           +  I  RI D T
Sbjct: 394 VSRINMRIQDLT 405

Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
357483927	204	Prolyl 4-hydroxylase alpha-2 subunit [Me	1.0	0.852	0.674	2e-62
357483925	289	Prolyl 4-hydroxylase alpha-2 subunit [Me	1.0	0.602	0.674	4e-62
225468574	288	PREDICTED: prolyl 4-hydroxylase subunit	1.0	0.604	0.683	4e-61
147800995	288	hypothetical protein VITISV_014644 [Viti	1.0	0.604	0.683	4e-61
255633460	207	unknown [Glycine max]	1.0	0.840	0.681	3e-60
363806698	289	uncharacterized protein LOC100806046 [Gl	0.994	0.598	0.698	3e-60
356540840	290	PREDICTED: prolyl 4-hydroxylase subunit	1.0	0.6	0.681	5e-60
240256489	289	iron ion binding / oxidoreductase/ oxido	1.0	0.602	0.655	5e-60
10177121	267	prolyl 4-hydroxylase, alpha subunit-like	1.0	0.651	0.655	5e-60
297797785	266	oxidoreductase [Arabidopsis lyrata subsp	1.0	0.654	0.649	3e-59

>gi|357483927|ref|XP_003612250.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] gi|355513585|gb|AES95208.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 118/175 (67%), Positives = 143/175 (81%), Gaps = 1/175 (0%)

Query: 1   MAKPRYSRFPTRKSSSS-TLILTLLIMFTFAILILLAFGILSMPSSSGDSRKANDLSSIV 59
           MAK RYSR P+RKSSS  TLI +L I FTF ILILL FGILS+PSS+ +  K NDL+SIV
Sbjct: 1   MAKSRYSRLPSRKSSSPYTLIFSLFIAFTFLILILLVFGILSIPSSNQNLPKPNDLTSIV 60

Query: 60  RKSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDT 119
             +++R++ +EG+ EQWVEV+SWEPRAFVYHNFL+KEECEYLI++A P M KSTVVDS+T
Sbjct: 61  HNTVDRNDDEEGKGEQWVEVVSWEPRAFVYHNFLTKEECEYLIDIAKPSMHKSTVVDSET 120

Query: 120 GKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLGMQFKFSLFFFYVLKK 174
           GKSKDSRVRTSSGTFLARGRDKI+R+IEK+IADFTF P+       +  + V +K
Sbjct: 121 GKSKDSRVRTSSGTFLARGRDKIVRNIEKKIADFTFIPVEHGEGLQVLHYEVGQK 175

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483925|ref|XP_003612249.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] gi|355513584|gb|AES95207.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula]

 Score =  242 bits (618), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 118/175 (67%), Positives = 143/175 (81%), Gaps = 1/175 (0%)

Query: 1   MAKPRYSRFPTRKSSSS-TLILTLLIMFTFAILILLAFGILSMPSSSGDSRKANDLSSIV 59
           MAK RYSR P+RKSSS  TLI +L I FTF ILILL FGILS+PSS+ +  K NDL+SIV
Sbjct: 1   MAKSRYSRLPSRKSSSPYTLIFSLFIAFTFLILILLVFGILSIPSSNQNLPKPNDLTSIV 60

Query: 60  RKSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDT 119
             +++R++ +EG+ EQWVEV+SWEPRAFVYHNFL+KEECEYLI++A P M KSTVVDS+T
Sbjct: 61  HNTVDRNDDEEGKGEQWVEVVSWEPRAFVYHNFLTKEECEYLIDIAKPSMHKSTVVDSET 120

Query: 120 GKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLGMQFKFSLFFFYVLKK 174
           GKSKDSRVRTSSGTFLARGRDKI+R+IEK+IADFTF P+       +  + V +K
Sbjct: 121 GKSKDSRVRTSSGTFLARGRDKIVRNIEKKIADFTFIPVEHGEGLQVLHYEVGQK 175

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225468574|ref|XP_002263060.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Vitis vinifera] gi|296084059|emb|CBI24447.3| unnamed protein product [Vitis vinifera]

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 119/174 (68%), Positives = 147/174 (84%)

Query: 1   MAKPRYSRFPTRKSSSSTLILTLLIMFTFAILILLAFGILSMPSSSGDSRKANDLSSIVR 60
           MAKPRY RFP RKSSSST++L++L+MF+F +L+LLA G+LS+PS SGDS +ANDLS+IV 
Sbjct: 1   MAKPRYPRFPPRKSSSSTVVLSMLLMFSFVVLVLLALGLLSIPSHSGDSPRANDLSTIVH 60

Query: 61  KSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTG 120
           +++ERS+G++G+ E W EVISWEPRAFVYHNFLSK+ECEYLI LA PHM+KSTVVDS TG
Sbjct: 61  RTVERSDGNDGKGEPWSEVISWEPRAFVYHNFLSKDECEYLIKLAKPHMQKSTVVDSSTG 120

Query: 121 KSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLGMQFKFSLFFFYVLKK 174
           KSKDSRVRTSSGTFL RG+DKIIR IEKR++DFTF P+       +  + V +K
Sbjct: 121 KSKDSRVRTSSGTFLTRGQDKIIRGIEKRLSDFTFLPVEHGEGLQILHYEVGQK 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147800995|emb|CAN64470.1| hypothetical protein VITISV_014644 [Vitis vinifera]

 Score =  239 bits (609), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 119/174 (68%), Positives = 147/174 (84%)

Query: 1   MAKPRYSRFPTRKSSSSTLILTLLIMFTFAILILLAFGILSMPSSSGDSRKANDLSSIVR 60
           MAKPRY RFP RKSSSST++L++L+MF+F +L+LLA G+LS+PS SGDS +ANDLS+IV 
Sbjct: 1   MAKPRYPRFPPRKSSSSTVVLSMLLMFSFVVLVLLALGLLSIPSHSGDSPRANDLSTIVH 60

Query: 61  KSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTG 120
           +++ERS+G++G+ E W EVISWEPRAFVYHNFLSK+ECEYLI LA PHM+KSTVVDS TG
Sbjct: 61  RTVERSDGNDGKGEPWSEVISWEPRAFVYHNFLSKDECEYLIKLAKPHMQKSTVVDSSTG 120

Query: 121 KSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLGMQFKFSLFFFYVLKK 174
           KSKDSRVRTSSGTFL RG+DKIIR IEKR++DFTF P+       +  + V +K
Sbjct: 121 KSKDSRVRTSSGTFLTRGQDKIIRGIEKRLSDFTFLPVEHGEGLQILHYEVGQK 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255633460|gb|ACU17088.1| unknown [Glycine max]

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 120/176 (68%), Positives = 144/176 (81%), Gaps = 2/176 (1%)

Query: 1   MAKPRYSRFPTRKSSSS-TLILTLLIMFTFAILILLAFGILSMPSSS-GDSRKANDLSSI 58
           MAKPRYSR P RKSSSS TLILTL ++FTF +LILLA GILS+PSSS G+  K NDL+SI
Sbjct: 1   MAKPRYSRLPPRKSSSSSTLILTLFLVFTFLVLILLALGILSIPSSSRGNLPKPNDLASI 60

Query: 59  VRKSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSD 118
            R ++  S+ D+ R EQWVEV+SWEPRAFVYHNFL+KEECEYLI++A P+M KS+VVDS+
Sbjct: 61  ARNTIHTSDDDDVRGEQWVEVVSWEPRAFVYHNFLTKEECEYLIDIAKPNMHKSSVVDSE 120

Query: 119 TGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLGMQFKFSLFFFYVLKK 174
           TGKSKDSRVRTSSGTFLARGRDKI+RDIEKRIA ++F P+       +  + V +K
Sbjct: 121 TGKSKDSRVRTSSGTFLARGRDKIVRDIEKRIAHYSFIPVEHGEGLQVLHYEVGQK 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806698|ref|NP_001242522.1| uncharacterized protein LOC100806046 [Glycine max] gi|255647110|gb|ACU24023.1| unknown [Glycine max]

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 123/176 (69%), Positives = 145/176 (82%), Gaps = 3/176 (1%)

Query: 1   MAKPRYSRFPTRKSSSS-TLILTLLIMFTFAILILLAFGILSMPSSS-GDSRKANDLSSI 58
           MAKPRYSR P RKSSSS TLILTL ++FTF +LILLA GILS+PSSS G+  K NDL+SI
Sbjct: 1   MAKPRYSRLPPRKSSSSSTLILTLFLVFTFLVLILLALGILSIPSSSRGNLPKPNDLASI 60

Query: 59  VRKSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSD 118
            R ++E S+ DE R EQWVEV+SWEPRAFVYHNFL+KEECEYLI++A P M KSTVVDS+
Sbjct: 61  ARNTIETSDSDE-RGEQWVEVVSWEPRAFVYHNFLTKEECEYLIDIAKPSMHKSTVVDSE 119

Query: 119 TGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLGMQFKFSLFFFYVLKK 174
           TGKSKDSRVRTSSGTFLARGRDKI+R+IEK+I+DFTF P+       +  + V +K
Sbjct: 120 TGKSKDSRVRTSSGTFLARGRDKIVRNIEKKISDFTFIPVEHGEGLQVLHYEVGQK 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540840|ref|XP_003538892.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Glycine max]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 120/176 (68%), Positives = 144/176 (81%), Gaps = 2/176 (1%)

Query: 1   MAKPRYSRFPTRKSSSS-TLILTLLIMFTFAILILLAFGILSMPSSS-GDSRKANDLSSI 58
           MAKPRYSR P RKSSSS TLILTL ++FTF +LILLA GILS+PSSS G+  K NDL+SI
Sbjct: 1   MAKPRYSRLPPRKSSSSSTLILTLFLVFTFLVLILLALGILSIPSSSRGNLPKPNDLASI 60

Query: 59  VRKSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSD 118
            R ++  S+ D+ R EQWVEV+SWEPRAFVYHNFL+KEECEYLI++A P+M KS+VVDS+
Sbjct: 61  ARNTIHTSDDDDVRGEQWVEVVSWEPRAFVYHNFLTKEECEYLIDIAKPNMHKSSVVDSE 120

Query: 119 TGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLGMQFKFSLFFFYVLKK 174
           TGKSKDSRVRTSSGTFLARGRDKI+RDIEKRIA ++F P+       +  + V +K
Sbjct: 121 TGKSKDSRVRTSSGTFLARGRDKIVRDIEKRIAHYSFIPVEHGEGLQVLHYEVGQK 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256489|ref|NP_201407.4| iron ion binding / oxidoreductase/ oxidoreductase protein [Arabidopsis thaliana] gi|332010770|gb|AED98153.1| iron ion binding / oxidoreductase/ oxidoreductase protein [Arabidopsis thaliana]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 114/174 (65%), Positives = 137/174 (78%)

Query: 1   MAKPRYSRFPTRKSSSSTLILTLLIMFTFAILILLAFGILSMPSSSGDSRKANDLSSIVR 60
           MA+PR  R   RKSS STL+  +LIM TF ILILLAFGILS+PS++  S KANDL+SIVR
Sbjct: 2   MARPRNHRPSARKSSHSTLVFAVLIMSTFVILILLAFGILSVPSNNAGSSKANDLTSIVR 61

Query: 61  KSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTG 120
           K+++RS  D+ + E+WVE+ISWEPRA VYHNFL+KEEC+YLI LA PHM KSTVVD  TG
Sbjct: 62  KTLQRSGEDDSKNERWVEIISWEPRASVYHNFLTKEECKYLIELAKPHMEKSTVVDEKTG 121

Query: 121 KSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLGMQFKFSLFFFYVLKK 174
           KS DSRVRTSSGTFLARGRDK IR+IEKRI+DFTF P+       +  + + +K
Sbjct: 122 KSTDSRVRTSSGTFLARGRDKTIREIEKRISDFTFIPVEHGEGLQVLHYEIGQK 175

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177121|dbj|BAB10411.1| prolyl 4-hydroxylase, alpha subunit-like protein [Arabidopsis thaliana]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 114/174 (65%), Positives = 137/174 (78%)

Query: 1   MAKPRYSRFPTRKSSSSTLILTLLIMFTFAILILLAFGILSMPSSSGDSRKANDLSSIVR 60
           MA+PR  R   RKSS STL+  +LIM TF ILILLAFGILS+PS++  S KANDL+SIVR
Sbjct: 2   MARPRNHRPSARKSSHSTLVFAVLIMSTFVILILLAFGILSVPSNNAGSSKANDLTSIVR 61

Query: 61  KSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTG 120
           K+++RS  D+ + E+WVE+ISWEPRA VYHNFL+KEEC+YLI LA PHM KSTVVD  TG
Sbjct: 62  KTLQRSGEDDSKNERWVEIISWEPRASVYHNFLTKEECKYLIELAKPHMEKSTVVDEKTG 121

Query: 121 KSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLGMQFKFSLFFFYVLKK 174
           KS DSRVRTSSGTFLARGRDK IR+IEKRI+DFTF P+       +  + + +K
Sbjct: 122 KSTDSRVRTSSGTFLARGRDKTIREIEKRISDFTFIPVEHGEGLQVLHYEIGQK 175

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797785|ref|XP_002866777.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297312612|gb|EFH43036.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 113/174 (64%), Positives = 136/174 (78%)

Query: 1   MAKPRYSRFPTRKSSSSTLILTLLIMFTFAILILLAFGILSMPSSSGDSRKANDLSSIVR 60
           MA+PR  R   RKSS STL+  +LIM TF ILILLAFGILS+PS++  S KANDL+SIVR
Sbjct: 1   MARPRSHRPSARKSSRSTLVFAVLIMSTFVILILLAFGILSVPSNNAGSSKANDLTSIVR 60

Query: 61  KSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTG 120
           K+++R   D+ + E+WVE+ISWEPRA VYHNFL+KEEC+YLI LA PHM KSTVVD  TG
Sbjct: 61  KTLQRGVEDDSKNERWVEIISWEPRASVYHNFLTKEECKYLIELAKPHMEKSTVVDEKTG 120

Query: 121 KSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLGMQFKFSLFFFYVLKK 174
           KS DSRVRTSSGTFLARGRDK IR+IEKRI+DFTF P+       +  + + +K
Sbjct: 121 KSTDSRVRTSSGTFLARGRDKTIREIEKRISDFTFIPVEHGEGLQVLHYEIGQK 174

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2156852	289	AT5G66060 [Arabidopsis thalian	0.908	0.546	0.506	3.5e-36
TAIR|locus:2012903	287	AT1G20270 [Arabidopsis thalian	0.896	0.543	0.515	7.4e-34
TAIR|locus:2827906	291	P4H5 "prolyl 4-hydroxylase 5"	0.666	0.398	0.610	1.3e-31
TAIR|locus:2125329	290	AT4G35810 [Arabidopsis thalian	0.666	0.4	0.563	1e-27
TAIR|locus:2125344	272	AT4G35820 [Arabidopsis thalian	0.482	0.308	0.445	1.8e-14
TAIR|locus:2088892	288	AT3G28490 [Arabidopsis thalian	0.448	0.270	0.493	6.1e-14
TAIR|locus:2041001	283	AT-P4H-1 "P4H isoform 1" [Arab	0.333	0.204	0.620	1.2e-13
TAIR|locus:2144960	298	AT5G18900 [Arabidopsis thalian	0.465	0.271	0.407	1.1e-12
TAIR|locus:2081106	299	P4H2 "prolyl 4-hydroxylase 2"	0.465	0.270	0.419	4.1e-12
TAIR|locus:2118889	288	AT4G33910 [Arabidopsis thalian	0.396	0.239	0.314	1.9e-05

TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 80/158 (50%), Positives = 96/158 (60%)

Query:     1 MAKPRYSRFPTRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPSSSGDSRKANDLSSIVR 60
             MA+PR  R   RK                            +PS++  S KANDL+SIVR
Sbjct:     2 MARPRNHRPSARKSSHSTLVFAVLIMSTFVILILLAFGILSVPSNNAGSSKANDLTSIVR 61

Query:    61 KSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTG 120
             K+++RS  D+ + E+WVE+ISWEPRA VYHNFL+KEEC+YLI LA PHM KSTVVD  TG
Sbjct:    62 KTLQRSGEDDSKNERWVEIISWEPRASVYHNFLTKEECKYLIELAKPHMEKSTVVDEKTG 121

Query:   121 KSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFFPL 158
             KS DSRVRTSSGTFLA              +DFTF P+
Sbjct:   122 KSTDSRVRTSSGTFLARGRDKTIREIEKRISDFTFIPV 159

GO:0005506 "iron ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 81/157 (51%), Positives = 92/157 (58%)

Query:     1 MAKPRYSRFPTRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPSSSGDSRKANDLSSIVR 60
             MAK R+SRF  RK                            +P ++ +S    DLS   R
Sbjct:     1 MAKLRHSRFQARKWSTLMLVLFMLFMLTIVLLMLLAFGVFSLPINNDESSPI-DLSYFRR 59

Query:    61 KSMERSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTG 120
              + ERSEG   R +QW EV+SWEPRAFVYHNFLSKEECEYLI+LA PHM KSTVVDS+TG
Sbjct:    60 AATERSEGLGKRGDQWTEVLSWEPRAFVYHNFLSKEECEYLISLAKPHMVKSTVVDSETG 119

Query:   121 KSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFFP 157
             KSKDSRVRTSSGTFL               AD+TF P
Sbjct:   120 KSKDSRVRTSSGTFLRRGRDKIIKTIEKRIADYTFIP 156

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 72/118 (61%), Positives = 85/118 (72%)

Query:    42 MPSSSGDSRKANDLSSIVRKSMERSEGDE-GRAEQWVEVISWEPRAFVYHNFLSKEECEY 100
             +P+++ +S K NDL++IVRKS E S GDE G  E+WVEVISWEPRA VYHNFL+ EECE+
Sbjct:    45 LPNANRNSSKTNDLTNIVRKS-ETSSGDEEGNGERWVEVISWEPRAVVYHNFLTNEECEH 103

Query:   101 LINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFFPL 158
             LI+LA P M KSTVVD  TG SKDSRVRTSSGTFL               +DFTF P+
Sbjct:   104 LISLAKPSMVKSTVVDEKTGGSKDSRVRTSSGTFLRRGHDEVVEVIEKRISDFTFIPV 161

GO:0005506 "iron ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0080147 "root hair cell development" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 67/119 (56%), Positives = 80/119 (67%)

Query:    42 MPSSSGDSRKANDLSSIVRKSMER-SEGDE--GRAEQWVEVISWEPRAFVYHNFLSKEEC 98
             +PS++  S    DL++IV+   ER S GDE  G  ++W+EVISWEPRAFVYHNFL+ EEC
Sbjct:    42 LPSTNKTSSMPMDLTTIVQTIQERESFGDEEDGNGDRWLEVISWEPRAFVYHNFLTNEEC 101

Query:    99 EYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFFP 157
             E+LI+LA P M KS VVD  TGKS DSRVRTSSGTFL               +DFTF P
Sbjct:   102 EHLISLAKPSMMKSKVVDVKTGKSIDSRVRTSSGTFLNRGHDEIVEEIENRISDFTFIP 160

GO:0005506 "iron ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2125344 AT4G35820 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 41/92 (44%), Positives = 56/92 (60%)

Query:    74 EQWVEVISWEPRAFVYHNFLS--------KEECEYLINLATPHMRKSTVVDSDTGKSKDS 125
             E+W+EVI+ EPRAFVYHNFL+         EEC++LI+LA P M +S V ++ TG  ++S
Sbjct:    85 ERWLEVITKEPRAFVYHNFLALFFKICKTNEECDHLISLAKPSMARSKVRNALTGLGEES 144

Query:   126 RVRTSSGTFLAXXXXXXXXXXXXXXADFTFFP 157
               RTSSGTF+               ++FTF P
Sbjct:   145 SSRTSSGTFIRSGHDKIVKEIEKRISEFTFIP 176

GO:0005506 "iron ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 6.1e-14, P = 6.1e-14
 Identities = 39/79 (49%), Positives = 48/79 (60%)

Query:    80 ISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVV-DSDTGKSKDSRVRTSSGTFLAXX 138
             +SW PRAF+Y  FLS EEC++LI LA   + KS VV D D+G+S+DS VRTSSG FL   
Sbjct:    35 LSWTPRAFLYKGFLSDEECDHLIKLAKGKLEKSMVVADVDSGESEDSEVRTSSGMFLTKR 94

Query:   139 XXXXXXXXXXXXADFTFFP 157
                         A +TF P
Sbjct:    95 QDDIVANVEAKLAAWTFLP 113

GO:0005506 "iron ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2041001 AT-P4H-1 "P4H isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 36/58 (62%), Positives = 41/58 (70%)

Query:    78 EVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFL 135
             EV+SW PR  V H+FLS EECEYL  +A P ++ STVVD  TGK   S VRTSSG FL
Sbjct:    78 EVVSWSPRIIVLHDFLSPEECEYLKAIARPRLQVSTVVDVKTGKGVKSDVRTSSGMFL 135

GO:0005506 "iron ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS;IDA

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 33/81 (40%), Positives = 53/81 (65%)

Query:    77 VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLA 136
             V+ +S +PRAFVY  FL++ EC+++++LA   +++S V D+D+G+SK S VRTSSGTF++
Sbjct:    37 VKQVSSKPRAFVYEGFLTELECDHMVSLAKASLKRSAVADNDSGESKFSEVRTSSGTFIS 96

Query:   137 XXXXXXXXXXXXXXADFTFFP 157
                           + +TF P
Sbjct:    97 KGKDPIVSGIEDKISTWTFLP 117

GO:0005506 "iron ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 34/81 (41%), Positives = 52/81 (64%)

Query:    77 VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLA 136
             V+ +S +PRAFVY  FL+  EC++LI+LA  ++++S V D+D G+S+ S VRTSSGTF++
Sbjct:    38 VKQVSSKPRAFVYEGFLTDLECDHLISLAKENLQRSAVADNDNGESQVSDVRTSSGTFIS 97

Query:   137 XXXXXXXXXXXXXXADFTFFP 157
                           + +TF P
Sbjct:    98 KGKDPIVSGIEDKLSTWTFLP 118

GO:0005506 "iron ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS;IDA

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IDA

GO:0080147 "root hair cell development" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2118889 AT4G33910 [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 22/70 (31%), Positives = 41/70 (58%)

Query:    68 GDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSR- 126
             G+E       +V+SW PRA  + NF + E+C+ +I  A  +++ S +       +++++ 
Sbjct:    69 GEESIGSIPFQVLSWRPRAIYFPNFATAEQCQAIIERAKVNLKPSALALRKGETAENTKG 128

Query:   127 VRTSSGTFLA 136
              RTSSGTF++
Sbjct:   129 TRTSSGTFIS 138

GO:0005506 "iron ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00013719001	SubName- Full=Chromosome undetermined scaffold_533, whole genome shotgun sequence; (288 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00038542001	RecName- Full=Proline iminopeptidase; EC=3.4.11.5; (331 aa)						•			0.899
	GSVIVG00038134001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (500 aa)						•			0.899
	GSVIVG00000690001	RecName- Full=Pyrroline-5-carboxylate reductase; EC=1.5.1.2; (276 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
PLN00052	310	PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio	6e-24
smart00702	165	smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun	5e-09

>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional

 Score = 95.1 bits (236), Expect = 6e-24
 Identities = 40/81 (49%), Positives = 57/81 (70%)

Query: 77  VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLA 136
           V+ +SW+PR FVY  FLS  EC++L+ LA   +++S V D+ +GKS  S VRTSSG FL 
Sbjct: 47  VKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLD 106

Query: 137 RGRDKIIRDIEKRIADFTFFP 157
           + +D ++  IE+RIA +TF P
Sbjct: 107 KRQDPVVSRIEERIAAWTFLP 127

Length = 310

>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues

 Score = 52.4 bits (126), Expect = 5e-09
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)

Query: 94  SKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARG-RDKIIRDIEKRIAD 152
           S  EC+ L+  A P   +  V       ++ S+ R S+GT+L    RD +I  I +R+AD
Sbjct: 1   SPAECQKLLEEAEPLGWRGEVTRGIGNPNETSQYRQSNGTWLELLERDLVIERIRQRLAD 60

Query: 153 FTFFPLGMQFKFSLFFFY 170
           F     G+          
Sbjct: 61  FLGLLAGLPLSAEDAQVA 78

Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor. Length = 165

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
KOG1591	289	consensus Prolyl 4-hydroxylase alpha subunit [Amin	99.97
PLN00052	310	prolyl 4-hydroxylase; Provisional	99.97
smart00702	178	P4Hc Prolyl 4-hydroxylase alpha subunit homologues	99.64
PRK05467	226	Fe(II)-dependent oxygenase superfamily protein; Pr	97.15

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]

Probab=99.97  E-value=1.4e-31  Score=230.51  Aligned_cols=167  Identities=34%  Similarity=0.456  Sum_probs=129.9

Q ss_pred             CCCCCCC--chHHHHHHHHHHHHHHHHHHHHhccccCCC---CCCCCCCCCCcchhhhhcccc------CCCCcCCCCce
Q 030651            8 RFPTRKS--SSSTLILTLLIMFTFAILILLAFGILSMPS---SSGDSRKANDLSSIVRKSMER------SEGDEGRAEQW   76 (174)
Q Consensus         8 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~k   76 (174)
                      +...+++  +..+.++..+.....+...+..++.+..+.   ...+..-..++.........+      .++|+.++|.|
T Consensus        10 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~g~~~~~~~~~~~~~~~~~~~~~~~~~ap~k   89 (289)
T KOG1591|consen   10 KLGILKSALSLLTEVFSILPESIRALDNLKQLEQLLDKEQEFTVYEQGCRGELPPLTKLTLRRLSCRNRAGPFLRLAPVK   89 (289)
T ss_pred             eccchHhhhhhcchhhhcchhhHHHhhhhhhhhhhccccccccchhhhccCccCccchhHhhhhhcccccCcceeecchh
Confidence            4444443  234666777777777777777888887765   221111122222222211111      12899999999


Q ss_pred             eEEeccCccEEEEcCCCCHHHHHHHHHHhcCCcccceee-eCCCCCccccceeeeeeeeeCCCCcHHHHHHHHHHHHhcC
Q 030651           77 VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVV-DSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTF  155 (174)
Q Consensus        77 vE~LS~dP~I~lyhdfLS~eEce~Li~lakp~L~rS~Vv-~~~tG~~~~s~~RTS~~awL~~~~~~vv~rI~~RIadlTG  155 (174)
                      +|++||+|++++|||||+++||++|+.+|+++|++++|. +..+|....+.+|+|+++|+..++++++++|++||+++||
T Consensus        90 ~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~~~~~~~~~i~~ri~~~T~  169 (289)
T KOG1591|consen   90 LEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPDGASPVVSRIEQRIADLTG  169 (289)
T ss_pred             hhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecCCCCHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999995 5555766777789999999999889999999999999999


Q ss_pred             CCCCCCcceeeeeccCCCC
Q 030651          156 FPLGMQFKFSLFFFYVLKK  174 (174)
Q Consensus       156 lp~e~~E~lQVlrY~i~~~  174 (174)
                      +|.+++|+|||+||++|+|
T Consensus       170 l~~e~~E~lqVlnYg~Gg~  188 (289)
T KOG1591|consen  170 LPVENGESLQVLNYGLGGH  188 (289)
T ss_pred             CCcccCccceEEEecCCcc
Confidence            9999999999999999986

>PLN00052 prolyl 4-hydroxylase; Provisional

Probab=99.97  E-value=1.1e-30  Score=227.07  Aligned_cols=105  Identities=39%  Similarity=0.648  Sum_probs=99.7

Q ss_pred             cCCCCceeEEeccCccEEEEcCCCCHHHHHHHHHHhcCCcccceeeeCCCCCccccceeeeeeeeeCCCCcHHHHHHHHH
Q 030651           70 EGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKR  149 (174)
Q Consensus        70 ~~l~~~kvE~LS~dP~I~lyhdfLS~eEce~Li~lakp~L~rS~Vv~~~tG~~~~s~~RTS~~awL~~~~~~vv~rI~~R  149 (174)
                      ..+.+.|+|+|||+|+|++||||||++||++||++|++++++|+|+++.+|+...++.|||+++|+.+.+++++++|++|
T Consensus        40 ~~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~R  119 (310)
T PLN00052         40 PPFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEER  119 (310)
T ss_pred             CCcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHHHHHH
Confidence            35699999999999999999999999999999999999999999998877777788999999999999889999999999


Q ss_pred             HHHhcCCCCCCCcceeeeeccCCCC
Q 030651          150 IADFTFFPLGMQFKFSLFFFYVLKK  174 (174)
Q Consensus       150 IadlTGlp~e~~E~lQVlrY~i~~~  174 (174)
                      |+++||+|.+++|++||+||+.||+
T Consensus       120 ia~~t~lp~~~~E~lQVlrY~~Gq~  144 (310)
T PLN00052        120 IAAWTFLPEENAENIQILRYEHGQK  144 (310)
T ss_pred             HHHHhCCCcccCcceEEEecCCCCC
Confidence            9999999999999999999999985

>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues

Probab=99.64  E-value=8.7e-16  Score=121.76  Aligned_cols=90  Identities=31%  Similarity=0.407  Sum_probs=80.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhcCCcccceeeeCCCCCccccceeeeeeeeeCCCC-cHHHHHHHHHHHHhcCCC---CC
Q 030651           84 PRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGR-DKIIRDIEKRIADFTFFP---LG  159 (174)
Q Consensus        84 P~I~lyhdfLS~eEce~Li~lakp~L~rS~Vv~~~tG~~~~s~~RTS~~awL~~~~-~~vv~rI~~RIadlTGlp---~e  159 (174)
                      |.|++||||||++||++|++++++...++.+.++.++....+++|+|+.+|+...+ ++++++|.+||+++++++   ..
T Consensus         1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~~~i~~~~~~~~~~~~   80 (178)
T smart00702        1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIRQRLADFLGLLRGLPL   80 (178)
T ss_pred             CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCCCCCCHHHHHHHHHHHHHHCCCchhhc
Confidence            89999999999999999999999988888887664333256789999999999875 899999999999999998   78


Q ss_pred             CCcceeeeeccCCC
Q 030651          160 MQFKFSLFFFYVLK  173 (174)
Q Consensus       160 ~~E~lQVlrY~i~~  173 (174)
                      +.|.+|+++|+.|+
T Consensus        81 ~~~~~~~~~Y~~g~   94 (178)
T smart00702       81 SAEDAQVARYGPGG   94 (178)
T ss_pred             cCcceEEEEECCCC
Confidence            99999999999986

Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional

Probab=97.15  E-value=0.0015  Score=55.11  Aligned_cols=81  Identities=14%  Similarity=0.103  Sum_probs=52.9

Q ss_pred             EEEEcCCCCHHHHHHHHHHhcC-CcccceeeeCCCCCccccceeeeeeeeeCCCCcHHHHHHHHHHHHhc---------C
Q 030651           86 AFVYHNFLSKEECEYLINLATP-HMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFT---------F  155 (174)
Q Consensus        86 I~lyhdfLS~eEce~Li~lakp-~L~rS~Vv~~~tG~~~~s~~RTS~~awL~~~~~~vv~rI~~RIadlT---------G  155 (174)
                      |+.++||||++||+++++.... .+....+.    .......+|.....  .. +++..+.|.+||....         +
T Consensus         2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~t----aG~~~~~vKnN~ql--~~-d~~~a~~l~~~i~~~L~~~~l~~sa~   74 (226)
T PRK05467          2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVT----AGAQAAQVKNNQQL--PE-DSPLARELGNLILDALTRNPLFFSAA   74 (226)
T ss_pred             eeeecccCCHHHHHHHHHHHHhcCCccCCcC----cCccchhccccccc--CC-CCHHHHHHHHHHHHHHhcCchhhhhc
Confidence            6789999999999999987753 34333332    12223345554443  33 4678888888887654         3


Q ss_pred             CCCCCCcceeeeeccCCCC
Q 030651          156 FPLGMQFKFSLFFFYVLKK  174 (174)
Q Consensus       156 lp~e~~E~lQVlrY~i~~~  174 (174)
                      +|. ..+++.+.+|..|+.
T Consensus        75 lp~-~i~~~~f~rY~~G~~   92 (226)
T PRK05467         75 LPR-KIHPPLFNRYEGGMS   92 (226)
T ss_pred             ccc-ccccceEEEECCCCc
Confidence            333 345788999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
3gze_A	225	Algal Prolyl 4-Hydroxylase Complexed With Zinc And		4e-16
2jij_A	233	Crystal Structure Of The Apo Form Of Chlamydomonas		4e-16
2jig_A	224	Crystal Structure Of Chlamydomonas Reinhardtii Prol		4e-16
2v4a_A	233	Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd		4e-15

>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 74  EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 130
           E+W   V  +SW PRAF+  NFLS EEC+Y++  A P M KS+VVD+++GKS DS +RTS
Sbjct: 8   EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 67
Query: 131 SGTFLAXXXXXXXXXXXXXXADFTFFPLGMQFKFSLFFFY 170
           +GT+ A              A  T  PL       +  ++
Sbjct: 68  TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYH 107

>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 74  EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 130
           E+W   V  +SW PRAF+  NFLS EEC+Y++  A P M KS+VVD+++GKS DS +RTS
Sbjct: 16  EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 75
Query: 131 SGTFLAXXXXXXXXXXXXXXADFTFFPLGMQFKFSLFFFY 170
           +GT+ A              A  T  PL       +  ++
Sbjct: 76  TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYH 115

>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 74  EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 130
           E+W   V  +SW PRAF+  NFLS EEC+Y++  A P M KS+VVD+++GKS DS +RTS
Sbjct: 7   EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 66
Query: 131 SGTFLAXXXXXXXXXXXXXXADFTFFPLGMQFKFSLFFFY 170
           +GT+ A              A  T  PL       +  ++
Sbjct: 67  TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYH 106

>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 74  EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 130
           E+W   V  +SW PRAF+  NFLS EEC+Y++  A P   KS+VVD+++GKS DS +RTS
Sbjct: 16  EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKXVKSSVVDNESGKSVDSEIRTS 75
Query: 131 SGTFLAXXXXXXXXXXXXXXADFTFFPLGMQFKFSLFFFY 170
           +GT+ A              A  T  PL       +  ++
Sbjct: 76  TGTWFAKGEDSVISKIEKRVAQVTXIPLENHEGLQVLHYH 115
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
2jig_A	224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	8e-35
3itq_A	216	Prolyl 4-hydroxylase, alpha subunit domain protei;	7e-30

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224

 Score =  120 bits (303), Expect = 8e-35
 Identities = 45/86 (52%), Positives = 60/86 (69%)

Query: 73  AEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSG 132
               V  +SW PRAF+  NFLS EEC+Y++  A P M KS+VVD+++GKS DS +RTS+G
Sbjct: 9   WRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTG 68

Query: 133 TFLARGRDKIIRDIEKRIADFTFFPL 158
           T+ A+G D +I  IEKR+A  T  PL
Sbjct: 69  TWFAKGEDSVISKIEKRVAQVTMIPL 94

>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216

 Score =  107 bits (269), Expect = 7e-30
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 77  VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLA 136
           +     EP   V  N LS EEC+ LI L+   + +S V  S       + +RTSSG FL 
Sbjct: 32  IISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSSRD----VNDIRTSSGAFL- 86

Query: 137 RGRDKIIRDIEKRIADFTFFPL 158
              +++   IEKRI+     P 
Sbjct: 87  -DDNELTAKIEKRISSIMNVPA 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
2jig_A	224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	99.91
3itq_A	216	Prolyl 4-hydroxylase, alpha subunit domain protei;	99.88
3dkq_A	243	PKHD-type hydroxylase SBAL_3634; putative oxygenas	98.85
2hbt_A	247	EGL nine homolog 1; prolyl hydroxylase, hypoxia in	97.94
2iuw_A	238	Alkylated repair protein ALKB homolog 3; oxidoredu	90.71
3s57_A	204	Alpha-ketoglutarate-dependent dioxygenase ALKB HO;	86.46

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A

Probab=99.91  E-value=2e-24  Score=176.43  Aligned_cols=104  Identities=44%  Similarity=0.738  Sum_probs=98.0

Q ss_pred             CCCCceeEEeccCccEEEEcCCCCHHHHHHHHHHhcCCcccceeeeCCCCCccccceeeeeeeeeCCCCcHHHHHHHHHH
Q 030651           71 GRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRI  150 (174)
Q Consensus        71 ~l~~~kvE~LS~dP~I~lyhdfLS~eEce~Li~lakp~L~rS~Vv~~~tG~~~~s~~RTS~~awL~~~~~~vv~rI~~RI  150 (174)
                      .+.+.|+|+||++|+|++||||||++||++|+++++++|++|.++++.+|....+.+|+|+++|+...+++++++|.+||
T Consensus         7 ~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~i~~ri   86 (224)
T 2jig_A            7 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRV   86 (224)
T ss_dssp             CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTCSHHHHHHHHHH
T ss_pred             cccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCCCHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999987767767788999999999988899999999999


Q ss_pred             HHhcCCCCCCCcceeeeeccCCCC
Q 030651          151 ADFTFFPLGMQFKFSLFFFYVLKK  174 (174)
Q Consensus       151 adlTGlp~e~~E~lQVlrY~i~~~  174 (174)
                      ++++|+|..+.|.+|++||+.|+.
T Consensus        87 ~~~~gl~~~~~e~~qv~rY~~G~~  110 (224)
T 2jig_A           87 AQVTMIPLENHEGLQVLHYHDGQK  110 (224)
T ss_dssp             HHHHTCCGGGBCCCEEEEEETTCC
T ss_pred             HHHhCCCcccccceEEEecCCCcc
Confidence            999999999999999999999974

>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}

Probab=99.88  E-value=2.3e-23  Score=171.62  Aligned_cols=96  Identities=31%  Similarity=0.402  Sum_probs=82.6

Q ss_pred             CCceeEEeccCccEEEEcCCCCHHHHHHHHHHhcCCcccceeeeCCCCCccccceeeeeeeeeCCCCcHHHHHHHHHHHH
Q 030651           73 AEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIAD  152 (174)
Q Consensus        73 ~~~kvE~LS~dP~I~lyhdfLS~eEce~Li~lakp~L~rS~Vv~~~tG~~~~s~~RTS~~awL~~~~~~vv~rI~~RIad  152 (174)
                      ...+++++|++|+|++||||||++||++|+++|+++|++|+|..+    ...+.+|+|+++|+.+  ++++++|++||++
T Consensus        28 r~v~v~~l~~~P~i~~~~~fLs~~Ec~~Li~~a~~~l~~s~v~~~----~~~~~~RtS~~~wl~~--~~~v~~i~~Ri~~  101 (216)
T 3itq_A           28 REIQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSS----RDVNDIRTSSGAFLDD--NELTAKIEKRISS  101 (216)
T ss_dssp             CEEEEEEEETTTTEEEEESCSCHHHHHHHHHHHHHHHC------------CCCCGGGTTCEECCC--CHHHHHHHHHHHH
T ss_pred             ceEEEEEeeCCCCEEEECCcCCHHHHHHHHHHhhcccccceeccC----CccCCcEeeeeEEeCC--cHHHHHHHHHHHH
Confidence            456889999999999999999999999999999999999998221    3457899999999987  8999999999999


Q ss_pred             hcCCCCCCCcceeeeeccCCCC
Q 030651          153 FTFFPLGMQFKFSLFFFYVLKK  174 (174)
Q Consensus       153 lTGlp~e~~E~lQVlrY~i~~~  174 (174)
                      ++|+|.+++|.+|++||+.|+.
T Consensus       102 ~~gl~~~~~E~lqv~~Y~~G~~  123 (216)
T 3itq_A          102 IMNVPASHGEGLHILNYEVDQQ  123 (216)
T ss_dssp             HHTSCGGGBCCCEEEEECBTCC
T ss_pred             hcCceeccccceeEEEeCCCCc
Confidence            9999999999999999999974

>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}

Probab=98.85  E-value=3.5e-09  Score=88.35  Aligned_cols=89  Identities=11%  Similarity=0.025  Sum_probs=67.4

Q ss_pred             EEeccCccEEEEcCCCCHHHHHHHHHHhcC-CcccceeeeCCCCCccccceeeeeeeeeCCCCcHHHHHHHHHHHHhcCC
Q 030651           78 EVISWEPRAFVYHNFLSKEECEYLINLATP-HMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFF  156 (174)
Q Consensus        78 E~LS~dP~I~lyhdfLS~eEce~Li~lakp-~L~rS~Vv~~~tG~~~~s~~RTS~~awL~~~~~~vv~rI~~RIadlTGl  156 (174)
                      |-+-.++.+++||||||++||++||++++. .+.++.+.    +...  ..+...+.|+.. +++++++|.+||.+++|.
T Consensus        13 ~~~~~~~~i~~i~dvLs~~Ec~~li~~~e~~~~~dg~~t----~g~~--~~~vr~n~~l~~-d~~~~~~l~~~i~~~l~~   85 (243)
T 3dkq_A           13 ENLYFQGMLIEIPNVFSKQEVSHLREQLDARRWIDGNQT----SGAM--ATTRKRNQQLDK-DDPVAVALGQQIMDRLLA   85 (243)
T ss_dssp             -CCCCBTTBEEECCSSCHHHHHHHHHHHHTSCCEEECCC----SSBS--SCCCEEEEECCT-TCHHHHHHHHHHHHHHHT
T ss_pred             cccccCCCEEEECCCCCHHHHHHHHHHHhhCCCccCccc----CCCc--cccceeeeEECC-CCHHHHHHHHHHHHHHcc
Confidence            456778999999999999999999999953 34443332    2212  233445677875 479999999999999887


Q ss_pred             C--------CCCCcceeeeeccCCC
Q 030651          157 P--------LGMQFKFSLFFFYVLK  173 (174)
Q Consensus       157 p--------~e~~E~lQVlrY~i~~  173 (174)
                      .        ....|++|+.+|+.|+
T Consensus        86 ~~~f~~~~L~~~~e~~~~~rY~~G~  110 (243)
T 3dkq_A           86 HPQFVSAALPLQFYPPLFNRYQGGE  110 (243)
T ss_dssp             CHHHHHHHCEEEEEEEEEEEECTTC
T ss_pred             CcchhhcccccccccceEEEECCCC
Confidence            6        2568999999999986

>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*

Probab=97.94  E-value=4.3e-05  Score=63.30  Aligned_cols=89  Identities=11%  Similarity=0.103  Sum_probs=60.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhcC-----CcccceeeeCCCCCccccceeeeeeeeeCCCCc--H----HHHHHHHHHH
Q 030651           83 EPRAFVYHNFLSKEECEYLINLATP-----HMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRD--K----IIRDIEKRIA  151 (174)
Q Consensus        83 dP~I~lyhdfLS~eEce~Li~lakp-----~L~rS~Vv~~~tG~~~~s~~RTS~~awL~~~~~--~----vv~rI~~RIa  151 (174)
                      .+-+++++|||+++||+.|++.++.     .++++.+.+.  +.......|++..+|+...+.  +    +..+|++.+.
T Consensus        25 ~~g~~Vid~fLs~ee~~~L~~~~~~~~~~g~~~~a~i~~~--~~~~~~~iR~d~i~wl~~~~~~~~~~~~l~~~i~~l~~  102 (247)
T 2hbt_A           25 KHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQ--KSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIR  102 (247)
T ss_dssp             HTSEEEESSSSCHHHHHHHHHHHHHHHHTTCSCSCCEEEC--CSSSTTCEECCEEEEECSCSTTCHHHHHHHHHHHHHHH
T ss_pred             cCCEEEECCCCCHHHHHHHHHHHHhhhhcCCccccccccc--cccccccccccceeeecccccchhHHHHHHHHHHHHHH
Confidence            3457889999999999999988863     4777777652  223456799999999998642  2    3444554444


Q ss_pred             HhcC-CCCC--C-CcceeeeeccC-CC
Q 030651          152 DFTF-FPLG--M-QFKFSLFFFYV-LK  173 (174)
Q Consensus       152 dlTG-lp~e--~-~E~lQVlrY~i-~~  173 (174)
                      .+.+ +...  + .+.+|+.+|.. |+
T Consensus       103 ~ln~~lGl~~i~~~~e~~~~~Y~~~G~  129 (247)
T 2hbt_A          103 HCNGKLGSYKINGRTKAMVACYPGNGT  129 (247)
T ss_dssp             HTTTTSTTCCEEEECCEEEEEECSSSC
T ss_pred             HHhhhcCcccccccceEEEEEecCCCC
Confidence            3332 1221  1 36699999985 64

>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10

Probab=90.71  E-value=3.4  Score=33.41  Aligned_cols=82  Identities=13%  Similarity=0.226  Sum_probs=48.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhc--CCcccceeeeCCCCCccccceeeeeeeeeCC--------------CCcHHHHHHH
Q 030651           84 PRAFVYHNFLSKEECEYLINLAT--PHMRKSTVVDSDTGKSKDSRVRTSSGTFLAR--------------GRDKIIRDIE  147 (174)
Q Consensus        84 P~I~lyhdfLS~eEce~Li~lak--p~L~rS~Vv~~~tG~~~~s~~RTS~~awL~~--------------~~~~vv~rI~  147 (174)
                      |.+.+++|||+.+|.+.|.+.-.  -.+........  |.......++   +|+.+              .-.+.+..|.
T Consensus        40 ~gl~~~~~fl~~~e~~~Ll~~l~~~~~w~~~~~~~~--g~~~~~~R~~---~~~g~~~Y~Ys~~~~~~~p~wp~~l~~l~  114 (238)
T 2iuw_A           40 SRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIRE--DITYQQPRLT---AWYGELPYTYSRITMEPNPHWHPVLRTLK  114 (238)
T ss_dssp             EEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESS--SCEEECSSEE---EEEECCCTTSCHHHHCCBSSCCHHHHHHH
T ss_pred             CcEEEECCCCCHHHHHHHHHHHHHhCCCccCceecC--CcccccCCee---EEcCCCccccCCcccCCCCCCCHHHHHHH
Confidence            45999999999999998876542  22333222111  2222222222   34331              1246788899


Q ss_pred             HHHHHhcCCCCCCCcceeeeeccCCC
Q 030651          148 KRIADFTFFPLGMQFKFSLFFFYVLK  173 (174)
Q Consensus       148 ~RIadlTGlp~e~~E~lQVlrY~i~~  173 (174)
                      +++++++|.+.   +..-|..|..|+
T Consensus       115 ~~~~~~~g~~~---n~~LvN~Y~~G~  137 (238)
T 2iuw_A          115 NRIEENTGHTF---NSLLCNLYRNEK  137 (238)
T ss_dssp             HHHHHHHSCCC---CEEEEEEECSTT
T ss_pred             HHHHHHhCCCC---CEEEEEEECCCC
Confidence            99999888654   345666777664

>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*

Probab=86.46  E-value=4.1  Score=32.14  Aligned_cols=85  Identities=12%  Similarity=0.040  Sum_probs=49.9

Q ss_pred             ccCccEEEEcCCCCHHHHHHHHHHh--cCCc---ccceeeeCCCCCccccceeeeeeeeeCCC---------------Cc
Q 030651           81 SWEPRAFVYHNFLSKEECEYLINLA--TPHM---RKSTVVDSDTGKSKDSRVRTSSGTFLARG---------------RD  140 (174)
Q Consensus        81 S~dP~I~lyhdfLS~eEce~Li~la--kp~L---~rS~Vv~~~tG~~~~s~~RTS~~awL~~~---------------~~  140 (174)
                      -.+=..+.|.|||+++|++.|.+.-  +..+   +...+.-.  |+..... |.  .+|..+.               -.
T Consensus         7 ~~~~~~~~~~~~l~~~~a~~l~~~l~~~~~w~~~~~~~~~~~--gk~~~~p-R~--~~wyg~~~~~Y~Ysg~~~~~~pwp   81 (204)
T 3s57_A            7 RAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVF--GKWHSVP-RK--QATYGDAGLTYTFSGLTLSPKPWI   81 (204)
T ss_dssp             EETTEEEEEEECSCHHHHHHHHHHHHHHCCCCCGGGGEEEET--TEEEECS-SE--EEEEECTTCCEEETTEEECCEECC
T ss_pred             eeCCceEEecCcCCHHHHHHHHHHHHHhCCCCCcccceEEEC--CeEeccC-cE--EEEECCCCCCcccCCCcccCCCCC
Confidence            3344567899999999999886532  3344   22222211  2221111 11  2344432               15


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCcceeeeeccCCC
Q 030651          141 KIIRDIEKRIADFTFFPLGMQFKFSLFFFYVLK  173 (174)
Q Consensus       141 ~vv~rI~~RIadlTGlp~e~~E~lQVlrY~i~~  173 (174)
                      +.+..|.+++++++|.+.++   .-|..|..|+
T Consensus        82 ~~L~~l~~~~~~~~g~~~n~---~LvN~Y~~G~  111 (204)
T 3s57_A           82 PVLERIRDHVSGVTGQTFNF---VLINRYKDGS  111 (204)
T ss_dssp             HHHHHHHHHHHHHHCCCCSE---EEEEEESSTT
T ss_pred             HHHHHHHHHHHHHhCCCCce---eEEEEECCCC
Confidence            79999999999999876543   4566676665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d2iuwa1	210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	93.99

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.2  Score=37.19  Aligned_cols=94  Identities=15%  Similarity=0.187  Sum_probs=54.2

Q ss_pred             CceeEEeccCcc----EEEEcCCCCHHHHHHHHHHhcC--CcccceeeeCCCCCccccceeee----------eeeeeC-
Q 030651           74 EQWVEVISWEPR----AFVYHNFLSKEECEYLINLATP--HMRKSTVVDSDTGKSKDSRVRTS----------SGTFLA-  136 (174)
Q Consensus        74 ~~kvE~LS~dP~----I~lyhdfLS~eEce~Li~lakp--~L~rS~Vv~~~tG~~~~s~~RTS----------~~awL~-  136 (174)
                      .....+++..|.    +.+|.|||+++|.+.|.+.-..  .+.+.....  -|+.......+.          ...... 
T Consensus         5 ~~~~~~~~~~p~g~~~l~y~p~fLs~~e~~~Ll~~L~~e~~w~~~~~~~--~g~~~~~pR~~~~~~d~~y~y~~~~~~~~   82 (210)
T d2iuwa1           5 REGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIR--EDITYQQPRLTAWYGELPYTYSRITMEPN   82 (210)
T ss_dssp             SSEEEEEECCSSSCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEES--SSCEEECSSEEEEEECCCTTSCHHHHCCB
T ss_pred             ccCceEeccCCCCcceEEEECCcCCHHHHHHHHHHHHhhCCccccceec--cCcccceeeeeEEecCcCccccccccccC
Confidence            345677888774    8999999999999988764321  222221111  011111111111          111111 


Q ss_pred             CCCcHHHHHHHHHHHHhcCCCCCCCcceeeeeccCC
Q 030651          137 RGRDKIIRDIEKRIADFTFFPLGMQFKFSLFFFYVL  172 (174)
Q Consensus       137 ~~~~~vv~rI~~RIadlTGlp~e~~E~lQVlrY~i~  172 (174)
                      ..-.+.+..+.+++...++.+.++   ..+.+|.-|
T Consensus        83 ~~~~~~l~~l~~~~~~~~~~~~~~---~~ln~Y~~~  115 (210)
T d2iuwa1          83 PHWHPVLRTLKNRIEENTGHTFNS---LLCNLYRNE  115 (210)
T ss_dssp             SSCCHHHHHHHHHHHHHHSCCCCE---EEEEEECST
T ss_pred             CCCcHHHHHHHHhhhhhcCccchh---hhhhccccC
Confidence            112578999999999999887643   566777554