Citrus Sinensis ID: 030664

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MASSSYSSTKALSLVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSLALL
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEcEEEccccEEEEccccccHHHHHHHHHHHHcccccccccHHHHHHcccccccccccHHHHHHHccccHHHHHHccccccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEEccccEEEccccEEEEcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHccccccHHHHHccc
Coil and Loop (DISEMBL)
masssysstKALSLVFYITLFCFLsgsvsasrtspsdvnskvKLGLYYeslcpysaNFIINYLVKIFEDVDLLSIVdlhlspwgnakirannstfdcqhgpsecllntveacaidswpelnkhfpfIYCIESLvyehkysqwetcfdkleldpkpivdcytsgygtQVSLALL
Flexible Loop (DISEMBL)
masssysstKALSLVFYITLFCFLSGsvsasrtspsdvnsKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSLALL
Low Complexity Region (SEG)
MAsssyssTKALSLVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSLALL
Disordered region (IsUnstruct)
**********ALSLVFYITLFCFLSGSV***********SKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVS****
Disordered Region (DISOPRED)
**********ALSLVFYITLFCFLSG****************KLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVY****SQW*TCFDKLELDPKPIVDCYTSGYGTQVSLALL
Disordered Region (DISEMBL)
*********KALSLVFYITLFCFLSGS***********NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSLALL
Disordered Region (DISPRO)
****SYSSTKALSLVFYITLFCFLSGSVSA*******VNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSLALL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASSSYSSTKALSLVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSLALL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q9ESY9	248	Gamma-interferon-inducibl	yes	no	0.705	0.491	0.351	5e-12
Q499T2	248	Gamma-interferon-inducibl	yes	no	0.705	0.491	0.351	1e-11
A6QPN6	244	Gamma-interferon-inducibl	yes	no	0.641	0.454	0.338	2e-11
P34276	323	GILT-like protein C02D5.2	no	no	0.635	0.340	0.294	4e-11
B3SP85	246	Gamma-interferon-inducibl	yes	no	0.774	0.544	0.335	1e-10
O17861	277	GILT-like protein F37H8.5	no	no	0.635	0.397	0.347	2e-10
P13284	250	Gamma-interferon-inducibl	yes	no	0.693	0.48	0.323	7e-09
Q23570	218	GILT-like protein ZK669.3	no	no	0.445	0.353	0.3	3e-05
Q61Z40	220	GILT-like protein CBG0328	N/A	no	0.867	0.681	0.204	7e-05

>sp|Q9ESY9|GILT_MOUSE Gamma-interferon-inducible lysosomal thiol reductase OS=Mus musculus GN=Ifi30 PE=1 SV=3

 Score = 70.5 bits (171), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 9/131 (6%)

Query: 42  VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNST--FDCQH 99
           V++ LYYESLC     F++  L   +  + ++ I+++ L P+GNA+ R  + T  F CQH
Sbjct: 59  VRVSLYYESLCGACRYFLVRDLFPTW--LMVMEIMNITLVPYGNAQERNVSGTWEFTCQH 116

Query: 100 GPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFD--KLELDPKPIV 157
           G  EC LN VEAC +D   E    F  I C+E +  +    +   C      E+ P+ I+
Sbjct: 117 GELECRLNMVEACLLDKL-EKEAAFLTIVCMEEM--DDMEKKLGPCLQVYAPEVSPESIM 173

Query: 158 DCYTSGYGTQV 168
           +C T   GTQ+
Sbjct: 174 ECATGKRGTQL 184

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 8EC: .EC: -EC: .EC: -

>sp|Q499T2|GILT_RAT Gamma-interferon-inducible lysosomal thiol reductase OS=Rattus norvegicus GN=Ifi30 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 9/131 (6%)

Query: 42  VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNST--FDCQH 99
           V + LYYESLC     F++  L   +  + ++ I+++ L P+GNA+ R  + T  F CQH
Sbjct: 59  VNVSLYYESLCGACRYFLVRNLFPTW--LMVMEIMNITLVPYGNAQERNVSGTWEFTCQH 116

Query: 100 GPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKL--ELDPKPIV 157
           G  EC LN VEAC +D   E    F  I C+E +  E    +   C      E+ P+ I+
Sbjct: 117 GELECKLNKVEACLLDKL-EKEAAFLTIVCMEEM--EDMEKKLGPCLQLYVPEVSPESIM 173

Query: 158 DCYTSGYGTQV 168
           +C T   GT++
Sbjct: 174 ECATGKRGTEL 184

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|A6QPN6|GILT_BOVIN Gamma-interferon-inducible lysosomal thiol reductase OS=Bos taurus GN=IFI30 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 31/142 (21%)

Query: 42  VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIR--ANNSTFDCQH 99
           V + LYYE+LCP    F+I  L   +  + +L I+++ L P+GNA+ R  +    F CQH
Sbjct: 56  VNVSLYYEALCPGCREFLIRELFPTW--LMVLEILNVTLVPYGNAQERNVSGKWEFTCQH 113

Query: 100 GPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKP---- 155
           G  ECLLN VEAC +D   E    F  I C+E +             D +E + KP    
Sbjct: 114 GERECLLNKVEACLLDQL-EQKIAFLTIVCLEEM-------------DDMEQNLKPCLQI 159

Query: 156 ---------IVDCYTSGYGTQV 168
                    I++C T   G Q+
Sbjct: 160 YAPKVSADSIMECATGNRGMQL 181

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|P34276|YKJ2_CAEEL GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 2/112 (1%)

Query: 23  FLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSP 82
           F+     A  T    V + VKL +Y E+ CP ++ F    L K ++ +  L+ ++L++ P
Sbjct: 120 FIEYEPKAGPTIKEPVENIVKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIP 179

Query: 83  WGNAKIRANNSTFD--CQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIES 132
           +G A+     + F+  CQHGP+EC +N +  C ID +   +++ P + C++ 
Sbjct: 180 FGKARCTEKGNDFECQCQHGPTECQINQLMNCVIDRFGFPHRYLPGVLCMQG 231

Caenorhabditis elegans (taxid: 6239)

>sp|B3SP85|GILT_PIG Gamma-interferon-inducible-lysosomal thiol reductase OS=Sus scrofa GN=IFI30 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 70/149 (46%), Gaps = 15/149 (10%)

Query: 24  LSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW 83
           L   V  S   P +VN      LYYESLC     F++  L   +  + +  I+++ L P+
Sbjct: 46  LQRPVGKSDPPPVNVN------LYYESLCNGCRYFLVRELFPTW--LMVWEILNVTLVPY 97

Query: 84  GNAKIR--ANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQ 141
           GNA+ R  +    F CQHG  EC +N VEAC +D   E N  F  I CIE L  +     
Sbjct: 98  GNAQERNVSGRWEFTCQHGEQECKMNKVEACLLDKL-EKNMAFLTIVCIEEL--DDMEKN 154

Query: 142 WETCFD--KLELDPKPIVDCYTSGYGTQV 168
            E C      ++ P  I++C     G Q+
Sbjct: 155 LEPCLQIYAPKVSPDSIMECAMGDRGMQL 183

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|O17861|YVRI_CAEEL GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 5/115 (4%)

Query: 39  NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQ 98
           N K+ + +  E+LCP   NF+   L  I    +  + V++ L P+GNAK+   + T  CQ
Sbjct: 73  NQKINITVLIEALCPDCQNFLTKQLYPIVFK-NFANYVNIELVPFGNAKV-LEDGTIKCQ 130

Query: 99  HGPSECLLNTVEACAIDSWPELNKHFPFIYCI-ESLVYEHKYSQW-ETCFDKLEL 151
           HG  EC +N  E C IDS  +     P + CI ESL  + +++   + CF+KL++
Sbjct: 131 HGEEECSINKFEGCFIDSMQD-QSPLPTLSCIEESLQKKVEFADAVQQCFEKLQI 184

Caenorhabditis elegans (taxid: 6239)

>sp|P13284|GILT_HUMAN Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=3

 Score = 60.1 bits (144), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 13/133 (9%)

Query: 42  VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIR--ANNSTFDCQH 99
           V + LYYE+LC     F+I  L   +  + ++ I+++ L P+GNA+ +  +    F CQH
Sbjct: 62  VNVTLYYEALCGGCRAFLIRELFPTW--LLVMEILNVTLVPYGNAQEQNVSGRWEFKCQH 119

Query: 100 GPSECLLNTVEACAIDSWPELNKHFPF--IYCIESLVYEHKYSQWETCFD--KLELDPKP 155
           G  EC  N VEAC +D   EL+    F  I C+E   +E        C       L P  
Sbjct: 120 GEEECKFNKVEACVLD---ELDMELAFLTIVCMEE--FEDMERSLPLCLQLYAPGLSPDT 174

Query: 156 IVDCYTSGYGTQV 168
           I++C     G Q+
Sbjct: 175 IMECAMGDRGMQL 187

Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds (By similarity). Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: -

EC: .

EC: -

>sp|Q23570|YO30_CAEEL GILT-like protein ZK669.3 OS=Caenorhabditis elegans GN=ZK669.3 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 3/80 (3%)

Query: 90  ANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDK- 148
           A++   DC HG  ECLLN ++AC I++ P    +   + CI+    ++     E CF+  
Sbjct: 84  ADDVVCDCHHGNRECLLNQLQACVIEALPNFEDYMEVVTCIQG--KQNISMAAEVCFEGP 141

Query: 149 LELDPKPIVDCYTSGYGTQV 168
            +LD   +++C  S +G ++
Sbjct: 142 TKLDRTKMMECAESRHGRKL 161

Caenorhabditis elegans (taxid: 6239)

>sp|Q61Z40|YO30_CAEBR GILT-like protein CBG03282 OS=Caenorhabditis briggsae GN=CBG03282 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 76/161 (47%), Gaps = 11/161 (6%)

Query: 14  LVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL 73
            V+Y  LF  +   + +S+ +  +   KV +  + E  C  ++ ++  + + ++  +   
Sbjct: 8   FVYYSFLFILV---LCSSKDTEVNNGEKVNIVAFGEGRCSDTSFWMKWHWLPMWRMLGST 64

Query: 74  SIVDLHLSPWGNAKIRANNSTFD-----CQHGPSECLLNTVEACAIDSWPELNKHFPFIY 128
             ++    P+G      ++ + D     C HG  ECLLN ++AC I++ P   ++   + 
Sbjct: 65  GRINFEYHPYGIKTTCVDSDSGDDVVCECHHGARECLLNQLQACVIEALPNFEEYMEVVT 124

Query: 129 CIESLVYEHKYSQWETCFDK-LELDPKPIVDCYTSGYGTQV 168
           CI+    ++     E CF++  +L+   ++ C  S +G ++
Sbjct: 125 CIQG--KQNISMAAEACFNEPSKLERAKMMSCADSRHGRKL 163

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
225434492	259	PREDICTED: gamma-interferon-inducible ly	0.797	0.532	0.758	4e-55
147805691	259	hypothetical protein VITISV_012674 [Viti	0.797	0.532	0.751	5e-54
224103875	255	predicted protein [Populus trichocarpa]	0.757	0.513	0.704	3e-51
18390723	265	GILT domain-containing protein [Arabidop	0.895	0.584	0.598	1e-49
8954038	262	Contains similarity to an unknown protei	0.895	0.591	0.598	1e-49
225434490	284	PREDICTED: gamma-interferon-inducible ly	0.953	0.580	0.6	6e-49
357458115	260	Gamma-interferon-inducible lysosomal thi	0.843	0.561	0.624	2e-48
388512129	260	unknown [Medicago truncatula]	0.843	0.561	0.617	4e-48
297843502	268	hypothetical protein ARALYDRAFT_470730 [	0.930	0.600	0.540	2e-47
449454993	223	PREDICTED: gamma-interferon-inducible ly	0.739	0.573	0.676	3e-47

>gi|225434492|ref|XP_002275283.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase isoform 2 [Vitis vinifera] gi|297745847|emb|CBI15903.3| unnamed protein product [Vitis vinifera]

 Score =  219 bits (557), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 107/141 (75%), Positives = 120/141 (85%), Gaps = 3/141 (2%)

Query: 30  ASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIR 89
           AS   PSD + KV LGLYYESLCPYSANFIINYLVKIFE+  L+SIVDL+L P+GNAKIR
Sbjct: 21  ASGALPSD-SDKVSLGLYYESLCPYSANFIINYLVKIFEN-GLISIVDLNLVPFGNAKIR 78

Query: 90  ANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKL 149
            NN T DCQHGP+ECLLNTVEACAID WP+L++HF FIYCIE+LVYE KY QWETCF+KL
Sbjct: 79  GNN-TIDCQHGPAECLLNTVEACAIDVWPDLSQHFSFIYCIETLVYERKYPQWETCFEKL 137

Query: 150 ELDPKPIVDCYTSGYGTQVSL 170
            LDPKPI DCY SGYG ++ L
Sbjct: 138 GLDPKPISDCYNSGYGKELEL 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805691|emb|CAN76152.1| hypothetical protein VITISV_012674 [Vitis vinifera]

 Score =  215 bits (548), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 106/141 (75%), Positives = 119/141 (84%), Gaps = 3/141 (2%)

Query: 30  ASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIR 89
           AS   PSD + KV LGLYYESLCPYSANFIINYLVKIFE+  L+SIV L+L P+GNAKIR
Sbjct: 21  ASGALPSD-SDKVSLGLYYESLCPYSANFIINYLVKIFEN-GLISIVXLNLVPFGNAKIR 78

Query: 90  ANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKL 149
            NN T DCQHGP+ECLLNTVEACAID WP+L++HF FIYCIE+LVYE KY QWETCF+KL
Sbjct: 79  GNN-TIDCQHGPAECLLNTVEACAIDVWPDLSQHFSFIYCIETLVYEXKYPQWETCFEKL 137

Query: 150 ELDPKPIVDCYTSGYGTQVSL 170
            LDPKPI DCY SGYG ++ L
Sbjct: 138 GLDPKPISDCYNSGYGKELEL 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103875|ref|XP_002313228.1| predicted protein [Populus trichocarpa] gi|222849636|gb|EEE87183.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 110/132 (83%), Gaps = 1/132 (0%)

Query: 39  NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQ 98
           + KV L LYYESLCPYSANFI+NYL K+ ED DLLSIVDL+LSPWGNAKIR N+ TF CQ
Sbjct: 33  SDKVSLALYYESLCPYSANFIVNYLDKLVEDDDLLSIVDLYLSPWGNAKIRGND-TFVCQ 91

Query: 99  HGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVD 158
           HGP ECLLNTVEACAI +WP+L  HFPF+YC+E LVYE KY +WE+CF++L LDPK + +
Sbjct: 92  HGPYECLLNTVEACAIHAWPKLEDHFPFVYCVEKLVYERKYPEWESCFEELGLDPKRVSE 151

Query: 159 CYTSGYGTQVSL 170
           CYT GYG ++ L
Sbjct: 152 CYTGGYGNELEL 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390723|ref|NP_563779.1| GILT domain-containing protein [Arabidopsis thaliana] gi|15146334|gb|AAK83650.1| At1g07080/F10K1_15 [Arabidopsis thaliana] gi|15809756|gb|AAL06806.1| At1g07080/F10K1_15 [Arabidopsis thaliana] gi|332189954|gb|AEE28075.1| GILT domain-containing protein [Arabidopsis thaliana]

 Score =  201 bits (511), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 94/157 (59%), Positives = 124/157 (78%), Gaps = 2/157 (1%)

Query: 14  LVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL 73
           LV Y+ LF F S S  +  + PS  + KV +GLYYESLCPY ++FI+N+L K+FED DL+
Sbjct: 12  LVCYVFLFPFASSSDYSGVSLPSS-SPKVSVGLYYESLCPYCSSFIVNHLAKLFED-DLI 69

Query: 74  SIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESL 133
           SIVDLHLSPWGN K+R++N T  CQHG  EC L+TVEACAID+WP+++ HFPFIYC+E L
Sbjct: 70  SIVDLHLSPWGNTKLRSDNVTAVCQHGAFECFLDTVEACAIDAWPKVSDHFPFIYCVEKL 129

Query: 134 VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSL 170
           V EHKY +WETC++KL L+ KP+ DC +SG+G +++L
Sbjct: 130 VTEHKYDKWETCYEKLNLNSKPVADCLSSGHGNELAL 166

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8954038|gb|AAF82212.1|AC067971_20 Contains similarity to an unknown protein F7A7_100 gi|7327817 from Arabidopsis thaliana BAC F7A7 gb|AL161946. ESTs gb|N65842, gb|F19836 and gb|AI993679 come from this gene [Arabidopsis thaliana]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 94/157 (59%), Positives = 124/157 (78%), Gaps = 2/157 (1%)

Query: 14  LVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL 73
           LV Y+ LF F S S  +  + PS  + KV +GLYYESLCPY ++FI+N+L K+FED DL+
Sbjct: 9   LVCYVFLFPFASSSDYSGVSLPSS-SPKVSVGLYYESLCPYCSSFIVNHLAKLFED-DLI 66

Query: 74  SIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESL 133
           SIVDLHLSPWGN K+R++N T  CQHG  EC L+TVEACAID+WP+++ HFPFIYC+E L
Sbjct: 67  SIVDLHLSPWGNTKLRSDNVTAVCQHGAFECFLDTVEACAIDAWPKVSDHFPFIYCVEKL 126

Query: 134 VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSL 170
           V EHKY +WETC++KL L+ KP+ DC +SG+G +++L
Sbjct: 127 VTEHKYDKWETCYEKLNLNSKPVADCLSSGHGNELAL 163

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434490|ref|XP_002275261.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase isoform 1 [Vitis vinifera]

 Score =  198 bits (504), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 102/170 (60%), Positives = 122/170 (71%), Gaps = 5/170 (2%)

Query: 5   SYSSTKALSLVFYITLFCFLSGSVSASRTSPSDVNS---KVKLGLYYESLCPYSANFIIN 61
           S SS  +LS      L   +S   SA+    S   S   KV L LYYE+LCPY +NFI+N
Sbjct: 15  SESSMDSLSFSHLPCLLLIISSLFSAATARASISASEAEKVPLALYYETLCPYCSNFIVN 74

Query: 62  YLVKIFEDVD-LLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPEL 120
           +L+K+F + D L+SIVDL L P+GNAKI   N T  CQHGP+ECLLNTVEACAID WP+L
Sbjct: 75  HLIKLFNNGDGLVSIVDLKLLPYGNAKI-GPNGTITCQHGPAECLLNTVEACAIDVWPDL 133

Query: 121 NKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSL 170
           ++HF FIYCIE+LVYE KY QWETCF+KL LDPKPI DCY SGYG ++ L
Sbjct: 134 SQHFSFIYCIETLVYERKYPQWETCFEKLGLDPKPISDCYNSGYGKELEL 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458115|ref|XP_003599338.1| Gamma-interferon-inducible lysosomal thiol reductase [Medicago truncatula] gi|355488386|gb|AES69589.1| Gamma-interferon-inducible lysosomal thiol reductase [Medicago truncatula]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 98/157 (62%), Positives = 115/157 (73%), Gaps = 11/157 (7%)

Query: 14  LVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL 73
           L+ +I+ F   S         PS  +SKV L LYYESLCPYSANFI+NYL KIF+  DLL
Sbjct: 13  LILFISFFSLFS---------PSQSHSKVSLELYYESLCPYSANFIVNYLPKIFKH-DLL 62

Query: 74  SIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESL 133
           SIVDL L PWGNAK+R N STFDCQHGP ECLLNTVEACAID WP+L KHF FIYC+E L
Sbjct: 63  SIVDLKLVPWGNAKLRGN-STFDCQHGPYECLLNTVEACAIDIWPQLEKHFSFIYCVEDL 121

Query: 134 VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSL 170
            Y+ K ++WE+CF+KL LD K + DCY S  G ++ L
Sbjct: 122 AYQGKRTEWESCFEKLGLDSKLVNDCYRSERGNELEL 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512129|gb|AFK44126.1| unknown [Medicago truncatula]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 97/157 (61%), Positives = 115/157 (73%), Gaps = 11/157 (7%)

Query: 14  LVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL 73
           L+ +I+ F   S         PS  +SKV L LYYESLCPYSANFI+NYL KIF+  DLL
Sbjct: 13  LILFISFFSLFS---------PSQSHSKVSLELYYESLCPYSANFIVNYLPKIFKH-DLL 62

Query: 74  SIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESL 133
           SIVDL L PWGNAK+R N STFDCQHGP ECLLNTVEACAID WP+L +HF FIYC+E L
Sbjct: 63  SIVDLKLVPWGNAKLRGN-STFDCQHGPYECLLNTVEACAIDIWPQLERHFSFIYCVEDL 121

Query: 134 VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSL 170
            Y+ K ++WE+CF+KL LD K + DCY S  G ++ L
Sbjct: 122 AYQGKRTEWESCFEKLGLDSKLVNDCYRSERGNELEL 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843502|ref|XP_002889632.1| hypothetical protein ARALYDRAFT_470730 [Arabidopsis lyrata subsp. lyrata] gi|297335474|gb|EFH65891.1| hypothetical protein ARALYDRAFT_470730 [Arabidopsis lyrata subsp. lyrata]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 126/174 (72%), Gaps = 13/174 (7%)

Query: 4   SSYSSTKALSLVFYITLF-------CFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSA 56
           +S +S   L LV Y+ LF             +S   +SP     KV +GLYYESLCPY +
Sbjct: 2   ASITSKLLLVLVCYVFLFPFASFSSSADFSGISLPSSSP-----KVSVGLYYESLCPYCS 56

Query: 57  NFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS 116
           +FI+N+L K+FED DL+SIVDLHLSPWGN K+R +N T  CQHG  EC L+TVEACAID+
Sbjct: 57  SFIVNHLTKLFED-DLISIVDLHLSPWGNTKLRPDNVTAVCQHGAFECFLDTVEACAIDA 115

Query: 117 WPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSL 170
           WP+++ HFPFIYC+E LV EHKY++WETC++KL L+ KP+ DC ++G+G +++L
Sbjct: 116 WPKVSDHFPFIYCVEKLVTEHKYNKWETCYEKLNLNSKPVADCLSTGHGNELAL 169

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454993|ref|XP_004145238.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus] gi|449472266|ref|XP_004153541.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus] gi|449514550|ref|XP_004164407.1| PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Cucumis sativus]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/130 (67%), Positives = 111/130 (85%), Gaps = 2/130 (1%)

Query: 41  KVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHG 100
           KV L LYYESLCPYSANFI+NYL+K+F+D DL+SIVDL L P+GNA++  N+S   CQHG
Sbjct: 38  KVSLKLYYESLCPYSANFIVNYLIKLFDD-DLISIVDLRLVPYGNARVGRNDS-ITCQHG 95

Query: 101 PSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCY 160
           PSECLLNT+EACAI++WPEL+ HFPFIYC+E LVY+ KY+QWE+CF+KL L+PKPI DCY
Sbjct: 96  PSECLLNTMEACAINAWPELDGHFPFIYCVEYLVYKRKYTQWESCFEKLGLNPKPISDCY 155

Query: 161 TSGYGTQVSL 170
           ++  G ++ L
Sbjct: 156 STELGKKLEL 165

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
TAIR|locus:2007407	265	AT1G07080 "AT1G07080" [Arabido	0.895	0.584	0.598	1.9e-51
TAIR|locus:2149730	233	OSH1 "AT5G01580" [Arabidopsis	0.826	0.613	0.482	2.5e-33
TAIR|locus:2123286	231	AT4G12900 "AT4G12900" [Arabido	0.826	0.619	0.440	4e-26
TAIR|locus:2135813	232	AT4G12890 "AT4G12890" [Arabido	0.884	0.659	0.425	1.1e-25
TAIR|locus:2135783	229	AT4G12870 "AT4G12870" [Arabido	0.832	0.628	0.417	2.1e-22
TAIR|locus:2123251	243	GILT "AT4G12960" [Arabidopsis	0.716	0.510	0.429	2.4e-21
MGI|MGI:2137648	248	Ifi30 "interferon gamma induci	0.751	0.524	0.350	7.9e-14
RGD|1310758	248	Ifi30 "interferon gamma induci	0.705	0.491	0.351	1.3e-13
WB|WBGene00009514	277	F37H8.5 [Caenorhabditis elegan	0.630	0.393	0.353	2.5e-13
UNIPROTKB|A6QPN6	244	IFI30 "Gamma-interferon-induci	0.774	0.549	0.344	3.4e-13

TAIR|locus:2007407 AT1G07080 "AT1G07080" [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 94/157 (59%), Positives = 124/157 (78%)

Query:    14 LVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL 73
             LV Y+ LF F S S  +  + PS  + KV +GLYYESLCPY ++FI+N+L K+FED DL+
Sbjct:    12 LVCYVFLFPFASSSDYSGVSLPSS-SPKVSVGLYYESLCPYCSSFIVNHLAKLFED-DLI 69

Query:    74 SIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESL 133
             SIVDLHLSPWGN K+R++N T  CQHG  EC L+TVEACAID+WP+++ HFPFIYC+E L
Sbjct:    70 SIVDLHLSPWGNTKLRSDNVTAVCQHGAFECFLDTVEACAIDAWPKVSDHFPFIYCVEKL 129

Query:   134 VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSL 170
             V EHKY +WETC++KL L+ KP+ DC +SG+G +++L
Sbjct:   130 VTEHKYDKWETCYEKLNLNSKPVADCLSSGHGNELAL 166

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2149730 OSH1 "AT5G01580" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 71/147 (48%), Positives = 95/147 (64%)

Query:    22 CFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLS 81
             C  S ++     S S  + KV L LYYE+LCP+ A FI+N L KIFE   L+S +DL L 
Sbjct:     8 CITSCTIFFCLLSLSS-SQKVTLSLYYEALCPFCAEFIVNRLPKIFE-TGLISSIDLQLV 65

Query:    82 PWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQ 141
             PWGNA IR +  T  CQHG +EC LN + ACAI+++P++ KHF +IYC E LV E+K  +
Sbjct:    66 PWGNAAIRPDG-TILCQHGEAECALNAIHACAINAYPDVMKHFGYIYCTEQLVLENKLEK 124

Query:   142 WETCFDKLELDPKPIVDCYTSGYGTQV 168
             W  C + + L  +  VDCY +GYG Q+
Sbjct:   125 WADCLEMVGLS-RAAVDCYINGYGNQL 150

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2123286 AT4G12900 "AT4G12900" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 70/159 (44%), Positives = 94/159 (59%)

Query:    14 LVFY--ITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVD 71
             LVF+  + LF F S ++ A     SD   KVKL LYYESLCP   NFI+++L KIF + D
Sbjct:    13 LVFFACLLLFTFSSHNLVAGE---SD---KVKLNLYYESLCPSCQNFIVHHLGKIF-NTD 65

Query:    72 LLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIE 131
             L +I DL L P+GNA + +++ T  CQHG  EC LN +EACAI +WP    H+ FI C+E
Sbjct:    66 LHTITDLKLIPFGNAHV-SDDLTVTCQHGEEECKLNALEACAIRTWPNQRLHYKFIRCVE 124

Query:   132 SLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSL 170
             +       + WE+C  K   + K I DCY      ++ L
Sbjct:   125 T-----NTNAWESCVKKYGGE-KAINDCYNGDLSKELIL 157

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2135813 AT4G12890 "AT4G12890" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 69/162 (42%), Positives = 90/162 (55%)

Query:     9 TKALSLVFYITLFCFLSGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFE 68
             TK + L   + L C    + S +     + N KVK+ LYYESLCPY  NFI++ L KIF 
Sbjct:     7 TKFVDLFPCLFLACLFVFTYSNNLVVAENSN-KVKINLYYESLCPYCQNFIVDDLGKIF- 64

Query:    69 DVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIY 128
             D DLL I DL L P+GNA I +NN T  CQHG  EC LN +EAC I + P+    + FI 
Sbjct:    65 DSDLLKITDLKLVPFGNAHI-SNNLTITCQHGEEECKLNALEACGIRTLPDPKLQYKFIR 123

Query:   129 CIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSL 170
             C+E        ++WE+C  K   + K I DCY      ++ L
Sbjct:   124 CVEK-----DTNEWESCVKKSGRE-KAINDCYNGDLSQKLIL 159

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2135783 AT4G12870 "AT4G12870" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 66/158 (41%), Positives = 89/158 (56%)

Query:    14 LVFYITLFCFLSGSVSASR-TSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDL 72
             LVF+    CF+  + S    T  SD   KV+L LYYESLCP   +FI++ LVK+F D DL
Sbjct:    10 LVFFA---CFVLFTFSHKLVTGESD---KVELNLYYESLCPGCQSFIVDELVKVF-DSDL 62

Query:    73 LSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIES 132
              +I D+ L P+G AK+ +NN T  CQHG  EC LN +EAC I++ P     + FI C+E+
Sbjct:    63 DTITDVKLVPFGYAKV-SNNLTVICQHGEEECKLNALEACVINTLPNPKSQYKFIRCVEN 121

Query:   133 LVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSL 170
                      WE+   K   + K I DCY S    ++ L
Sbjct:   122 -----NTDNWESSCLKGYGNEKAINDCYNSDLSKKLIL 154

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2123251 GILT "AT4G12960" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 61/142 (42%), Positives = 82/142 (57%)

Query:    39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQ 98
             + KVKL LYYESLCP    FI++ L KIF D DL +I DL L P+GNA++ ++N T  CQ
Sbjct:    29 SGKVKLNLYYESLCPGCQEFIVDDLGKIF-DYDLYTITDLKLFPFGNAEL-SDNLTVTCQ 86

Query:    99 HGPSECLLNTVEACAIDSWPE-LNK---------HFPFIYCIESLVYEHKYSQWETCFDK 148
             HG  EC LN +EACA+ +WP+  +K          + FI C+ES   + K   WE+C   
Sbjct:    87 HGEEECKLNALEACALRTWPDQFDKCDGYGTQKSQYSFIRCVES---DTK--GWESCVKN 141

Query:   149 LELDPKPIVDCYTSGYGTQVSL 170
                + K I DCY      ++ L
Sbjct:   142 SGRE-KAINDCYNGDLSRKLIL 162

GO:0003824 "catalytic activity" evidence=ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2137648 Ifi30 "interferon gamma inducible protein 30" [Mus musculus (taxid:10090)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 48/137 (35%), Positives = 72/137 (52%)

Query:    35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNST 94
             P   +  V++ LYYESLC     F++  L   +  + ++ I+++ L P+GNA+ R  + T
Sbjct:    52 PLPPSPPVRVSLYYESLCGACRYFLVRDLFPTW--LMVMEIMNITLVPYGNAQERNVSGT 109

Query:    95 --FDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLV-YEHKYSQWETCFDKLEL 151
               F CQHG  EC LN VEAC +D   E    F  I C+E +   E K       +   E+
Sbjct:   110 WEFTCQHGELECRLNMVEACLLDKL-EKEAAFLTIVCMEEMDDMEKKLGPCLQVYAP-EV 167

Query:   152 DPKPIVDCYTSGYGTQV 168
              P+ I++C T   GTQ+
Sbjct:   168 SPESIMECATGKRGTQL 184

GO:0005576 "extracellular region" evidence=IEA

GO:0005764 "lysosome" evidence=ISO;IDA

GO:0015036 "disulfide oxidoreductase activity" evidence=TAS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISO

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IMP

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=IMP

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IMP

GO:0050821 "protein stabilization" evidence=IMP

GO:0055114 "oxidation-reduction process" evidence=ISO;TAS

RGD|1310758 Ifi30 "interferon gamma inducible protein 30" [Rattus norvegicus (taxid:10116)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 46/131 (35%), Positives = 69/131 (52%)

Query:    42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNST--FDCQH 99
             V + LYYESLC     F++  L   +  + ++ I+++ L P+GNA+ R  + T  F CQH
Sbjct:    59 VNVSLYYESLCGACRYFLVRNLFPTW--LMVMEIMNITLVPYGNAQERNVSGTWEFTCQH 116

Query:   100 GPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKL--ELDPKPIV 157
             G  EC LN VEAC +D   E    F  I C+E +  E    +   C      E+ P+ I+
Sbjct:   117 GELECKLNKVEACLLDKL-EKEAAFLTIVCMEEM--EDMEKKLGPCLQLYVPEVSPESIM 173

Query:   158 DCYTSGYGTQV 168
             +C T   GT++
Sbjct:   174 ECATGKRGTEL 184

GO:0005576 "extracellular region" evidence=IEA

GO:0005764 "lysosome" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISO;ISS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=IEA;ISO

GO:0030054 "cell junction" evidence=IEA;ISO

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=ISO;ISS

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA;ISO

GO:0050821 "protein stabilization" evidence=IEA;ISO

WB|WBGene00009514 F37H8.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 175 (66.7 bits), Expect = 2.5e-13, P = 2.5e-13
 Identities = 41/116 (35%), Positives = 66/116 (56%)

Query:    39 NSKVKLGLYYESLCPYSANFIINYLVKI-FEDVDLLSIVDLHLSPWGNAKIRANNSTFDC 97
             N K+ + +  E+LCP   NF+   L  I F++    + V++ L P+GNAK+   + T  C
Sbjct:    73 NQKINITVLIEALCPDCQNFLTKQLYPIVFKN--FANYVNIELVPFGNAKV-LEDGTIKC 129

Query:    98 QHGPSECLLNTVEACAIDSWPELNKHFPFIYCIE-SLVYEHKYSQW-ETCFDKLEL 151
             QHG  EC +N  E C IDS  + +   P + CIE SL  + +++   + CF+KL++
Sbjct:   130 QHGEEECSINKFEGCFIDSMQDQSP-LPTLSCIEESLQKKVEFADAVQQCFEKLQI 184

GO:0016021 "integral to membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|A6QPN6 IFI30 "Gamma-interferon-inducible lysosomal thiol reductase" [Bos taurus (taxid:9913)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 50/145 (34%), Positives = 73/145 (50%)

Query:    28 VSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAK 87
             + AS   P DV   V + LYYE+LCP    F+I  L   +  + +L I+++ L P+GNA+
Sbjct:    44 LQASPQKP-DV-PLVNVSLYYEALCPGCREFLIRELFPTW--LMVLEILNVTLVPYGNAQ 99

Query:    88 IR--ANNSTFDCQHGPSECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWETC 145
              R  +    F CQHG  ECLLN VEAC +D   E    F  I C+E +  +      + C
Sbjct:   100 ERNVSGKWEFTCQHGERECLLNKVEACLLDQL-EQKIAFLTIVCLEEM--DDMEQNLKPC 156

Query:   146 FDKL--ELDPKPIVDCYTSGYGTQV 168
                   ++    I++C T   G Q+
Sbjct:   157 LQIYAPKVSADSIMECATGNRGMQL 181

GO:0005764 "lysosome" evidence=ISS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=ISS

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISS

GO:0005576 "extracellular region" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024041001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (259 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	173
pfam03227	109	pfam03227, GILT, Gamma interferon inducible lysoso	1e-34

>gnl|CDD|217437 pfam03227, GILT, Gamma interferon inducible lysosomal thiol reductase (GILT)

 Score =  117 bits (294), Expect = 1e-34
 Identities = 45/114 (39%), Positives = 60/114 (52%), Gaps = 7/114 (6%)

Query: 42  VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGP 101
           V + LYYESLCP    FI N L   + D+DLL I DL L P+G A+   + S   CQHGP
Sbjct: 1   VNITLYYESLCPDCQKFIRNQLYPAWFDLDLLDITDLKLVPFGKARCVDDGSVCTCQHGP 60

Query: 102 SECLLNTVEACAIDSWPELNKHFPFIYCIESLVYEHKYSQWE--TCFDKLELDP 153
            EC LN ++AC I++ P      PFI C++      K +  E   C  +   + 
Sbjct: 61  EECKLNALQACVIETLPNQKLQLPFIRCMQG-----KTNYSEGFKCLKEYGPEK 109

This family includes the two characterized human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences. It also contains several other eukaryotic putative proteins with similarity to GILT. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
KOG3160	220	consensus Gamma-interferon inducible lysosomal thi	100.0
PF03227	108	GILT: Gamma interferon inducible lysosomal thiol r	100.0
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	96.91
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	95.58
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	93.88
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	92.95
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	90.54
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	88.59
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	86.43
cd03025	193	DsbA_FrnE_like DsbA family, FrnE-like subfamily; c	86.41
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	83.9
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	83.5
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	82.79
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	81.61

>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-44  Score=299.05  Aligned_cols=133  Identities=43%  Similarity=0.808  Sum_probs=122.0

Q ss_pred             CCCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeeeeeeecCCCceeecCChhhhhcChhhhhhhc
Q 030664           36 SDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAID  115 (173)
Q Consensus        36 ~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~A~~~~~~~~f~CQHG~~EC~gN~~qaCai~  115 (173)
                      ..+.+||+|+||||||||||++||++||+|+|++ .+.+++||++||||||+..+++++++||||+.||.+|++|+|+|+
T Consensus        35 ~~~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~-~~~~~idl~lvPfGna~~~~~~~~~~CqHG~~EC~lN~LqaCvI~  113 (220)
T KOG3160|consen   35 GSQAPKVNITLYYEALCPDCSKFIRNQLYPFFDN-LLPSILDLTLVPFGNAQCRNDGGTFTCQHGEEECKLNKLQACVID  113 (220)
T ss_pred             cccCCeeEEEEEEEecCccHHHHHHHHHHHHHhh-cccceeEEEEEccCCceeecCceEEEecCCHHHHhhhHHHHHHHH
Confidence            3556699999999999999999999999999997 589999999999999999877699999999999999999999999


Q ss_pred             cccccccccceeecccccccccccchHHhHHhhcCCCchhhhcccCCchhhHHHHhh
Q 030664          116 SWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSLAL  172 (173)
Q Consensus       116 ~~~~~~~~l~fI~Cm~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~~  172 (173)
                      +++++.++++||.||++.   .+.+.+.+|+++.++++..|++|++|++|++|++++
T Consensus       114 ~l~~~~~~l~~i~C~~~~---~~~~~~~~C~~~~~~~~~~i~~Ca~s~~g~~L~~~~  167 (220)
T KOG3160|consen  114 TLPDQSDQLPFIRCIQGK---QKLSEAEDCLEKYGLNEKKIRECANSRLGAKLLLKY  167 (220)
T ss_pred             hhhchHhhhceehhhhcc---cchhHHHHHHhhcCCCHHHHHHHhcCchHHHHHHHH
Confidence            999999999999999983   234457789999999999999999999999999864

>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]

Probab=100.00  E-value=1.5e-41  Score=253.35  Aligned_cols=107  Identities=40%  Similarity=0.764  Sum_probs=95.2

Q ss_pred             eEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeeeeeeecCCCceeecCChhhhhcChhhhhhhccccccc
Q 030664           42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWPELN  121 (173)
Q Consensus        42 V~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~A~~~~~~~~f~CQHG~~EC~gN~~qaCai~~~~~~~  121 (173)
                      |+|+|||||+||||++||++||.|+|..+++.++|||+|||||||+.+.++.+|+|||||.||+||++|+|+++++++..
T Consensus         1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~~q~C~l~~~~~~~   80 (108)
T PF03227_consen    1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPFGNAKVSSSGNEFTCQHGPDECYGNKLQACALKHLPDTN   80 (108)
T ss_pred             CEEEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEEeccEEecCCceeecCCcHHHHHcCHHHHhHHHhcCChh
Confidence            79999999999999999999999988555799999999999999998876457999999999999999999999999888


Q ss_pred             cccceeecccccccccccchHHhHHhhcCC
Q 030664          122 KHFPFIYCIESLVYEHKYSQWETCFDKLEL  151 (173)
Q Consensus       122 ~~l~fI~Cm~~~~~~~~~~~~~~Ca~~~gl  151 (173)
                      .+|+||+||++....  ...+ .||+++++
T Consensus        81 ~~~~~i~Cm~~~~~~--~~~~-~Ca~~~~~  107 (108)
T PF03227_consen   81 AALPFIACMESSQDF--PKAI-KCAKKYGI  107 (108)
T ss_pred             hhcCEEEEEcCCCCC--chhh-hhHHhcCC
Confidence            899999999988542  2233 39999875

It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=96.91  E-value=0.0037  Score=46.67  Aligned_cols=115  Identities=13%  Similarity=0.069  Sum_probs=64.8

Q ss_pred             CCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeeeeeeecCCCceeecCChhhhhcChhhhhhhccc
Q 030664           38 VNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSW  117 (173)
Q Consensus        38 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~A~~~~~~~~f~CQHG~~EC~gN~~qaCai~~~  117 (173)
                      .+.++.|.+|+--.||.|++|- ..|.+.+..  ..+ +++.++||--..  .. .       .   ..-+.-.|+... 
T Consensus         3 ~~a~~~i~~f~D~~Cp~C~~~~-~~l~~~~~~--~~~-~~~~~~~~p~~~--~~-~-------~---~~~~~~~~~~~~-   64 (154)
T cd03023           3 PNGDVTIVEFFDYNCGYCKKLA-PELEKLLKE--DPD-VRVVFKEFPILG--ES-S-------V---LAARVALAVWKN-   64 (154)
T ss_pred             CCCCEEEEEEECCCChhHHHhh-HHHHHHHHH--CCC-ceEEEEeCCccC--cc-h-------H---HHHHHHHHHHHh-
Confidence            4578999999999999999994 566665544  444 666766662111  00 0       0   001111122211 


Q ss_pred             cccccccceeecccccccccccchHHhHHhhcCCCchhhhcccCCchhhHHHHh
Q 030664          118 PELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSLA  171 (173)
Q Consensus       118 ~~~~~~l~fI~Cm~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~  171 (173)
                       ++...++|..=+.........+.....+++.|++.+.+.+|.++++.++.+.+
T Consensus        65 -~~~~~~~~~~~lf~~~~~~~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~  117 (154)
T cd03023          65 -GPGKYLEFHNALMATRGRLNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDK  117 (154)
T ss_pred             -ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHH
Confidence             22233343222211111112233567789999999999999998776665543

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=95.58  E-value=0.024  Score=43.73  Aligned_cols=112  Identities=14%  Similarity=0.003  Sum_probs=67.7

Q ss_pred             CCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeeeeeeecCCCceeecCChhhhhcChhhhhhhcccc
Q 030664           39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWP  118 (173)
Q Consensus        39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~A~~~~~~~~f~CQHG~~EC~gN~~qaCai~~~~  118 (173)
                      +.+|.|..|+-=.||.|++| ...+.+.+.+  ..+.+.++++|.........             ...+....+.. . 
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~-------------~aa~a~~aa~~-~-   75 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNF-EPILEAWVKK--LPKDVKFEKVPVVFGGGEGE-------------PLARAFYAAEA-L-   75 (178)
T ss_pred             CCCcEEEEEECCCCcchhhh-hHHHHHHHHh--CCCCceEEEcCCccccccch-------------HHHHHHHHHHH-c-
Confidence            68999999999999999999 4668888876  68889999999764321100             00111111111 0 


Q ss_pred             ccccccceeecccc-----cccccccchHHhHHhhcCCCchhhhcccCCchhhHHHH
Q 030664          119 ELNKHFPFIYCIES-----LVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSL  170 (173)
Q Consensus       119 ~~~~~l~fI~Cm~~-----~~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~  170 (173)
                        ...+.|..=+..     .......+.+.+.|++.|++.+.+.+|.++++-++.+.
T Consensus        76 --~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~  130 (178)
T cd03019          76 --GLEDKLHAALFEAIHEKRKRLLDPDDIRKIFLSQGVDKKKFDAAYNSFSVKALVA  130 (178)
T ss_pred             --CcHhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHH
Confidence              111122111111     01111134577889999999999999998876544443

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=93.88  E-value=0.15  Score=38.47  Aligned_cols=46  Identities=17%  Similarity=0.353  Sum_probs=35.8

Q ss_pred             CCCCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccC--CceeeEEEEEe
Q 030664           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDL--LSIVDLHLSPW   83 (173)
Q Consensus        35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l--~d~vdl~lvP~   83 (173)
                      .+..+.++.|++|..=.||.|++|.. .+.+++.+  +  .+.+.+.++|+
T Consensus         7 ~G~~~a~~~v~~f~d~~Cp~C~~~~~-~~~~~~~~--~i~~~~v~~~~~~~   54 (162)
T PF13462_consen    7 IGNPDAPITVTEFFDFQCPHCAKFHE-ELEKLLKK--YIDPGKVKFVFRPV   54 (162)
T ss_dssp             ES-TTTSEEEEEEE-TTSHHHHHHHH-HHHHHHHH--HTTTTTEEEEEEES
T ss_pred             ecCCCCCeEEEEEECCCCHhHHHHHH-HHhhhhhh--ccCCCceEEEEEEc
Confidence            44567799999999999999999964 45577775  6  67889999887

...

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=92.95  E-value=0.12  Score=41.19  Aligned_cols=122  Identities=16%  Similarity=0.151  Sum_probs=63.9

Q ss_pred             EEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeeeeeeecCC-CceeecCChh--hhhcChhhhhhh-cc--ccc
Q 030664           46 LYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANN-STFDCQHGPS--ECLLNTVEACAI-DS--WPE  119 (173)
Q Consensus        46 vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~A~~~~~~-~~f~CQHG~~--EC~gN~~qaCai-~~--~~~  119 (173)
                      +|+--+||.|-.+ ...|..+...  +.+.+++++||.|++...... ....+.+..-  +=..+...+|.- +.  ...
T Consensus         2 ~F~dPlc~~C~~~-E~~l~kl~~~--~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~la~kAA~~qg   78 (176)
T PF13743_consen    2 LFVDPLCSWCWGF-EPELRKLKEE--YGNKIEFRFIPGGLMPDINDFMPRMPINGDFWRNEPRSSSYPACLAYKAAQLQG   78 (176)
T ss_dssp             EEE-TT-HHHHHH-HHHHHHHHHH--S-TTEEEEEEE--SS-S--SB--H----TTHHHS--BS--HHHHHHHHHHHTTT
T ss_pred             eeeCCCChHHHHh-HHHHHHHHHH--cCCcEEEEEEEccchHHHHHHHHhcCCCHHHhcCCCCCCchHHHHHHHHHHHhC
Confidence            4667799999988 4556666664  999999999999998743221 1112222221  112344555521 11  224


Q ss_pred             cccccceeeccccccc-----ccccchHHhHHhhcCCCchhhhcccCCchhhHHHH
Q 030664          120 LNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSL  170 (173)
Q Consensus       120 ~~~~l~fI~Cm~~~~~-----~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~  170 (173)
                      .++...|+.-|.+...     ....+....+|++.|+|.+...+=..|+..++.+.
T Consensus        79 ~k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD~~~F~~d~~S~~~~~~~~  134 (176)
T PF13743_consen   79 KKKARRFLRALQEALFLEGKNYSDEELLLEIAEELGLDVEMFKEDLHSDEAKQAFQ  134 (176)
T ss_dssp             -H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCHHHHHHHHhChHHHHHHH
Confidence            4666788877765542     12235578999999999988776666666666554

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=90.54  E-value=0.63  Score=39.30  Aligned_cols=46  Identities=15%  Similarity=0.241  Sum_probs=35.5

Q ss_pred             CCCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeeee
Q 030664           36 SDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNA   86 (173)
Q Consensus        36 ~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~A   86 (173)
                      ...+.|..|.||.--.||+|++|- ..+.|..+.    ..+.++++|++--
T Consensus       113 g~~~ak~~I~vFtDp~CpyC~kl~-~~l~~~~~~----g~V~v~~ip~~~l  158 (251)
T PRK11657        113 GKADAPRIVYVFADPNCPYCKQFW-QQARPWVDS----GKVQLRHILVGII  158 (251)
T ss_pred             cCCCCCeEEEEEECCCChhHHHHH-HHHHHHhhc----CceEEEEEecccc
Confidence            345778899999999999999995 457775543    3488999998643

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=88.59  E-value=0.77  Score=30.78  Aligned_cols=41  Identities=22%  Similarity=0.314  Sum_probs=32.4

Q ss_pred             EEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeeeee
Q 030664           44 LGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAK   87 (173)
Q Consensus        44 V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~A~   87 (173)
                      |.+|+--.||.|..+- .+|.+....  ..+.++++++|+.-..
T Consensus         1 i~~f~d~~Cp~C~~~~-~~l~~~~~~--~~~~~~~~~~~~~~~~   41 (98)
T cd02972           1 IVEFFDPLCPYCYLFE-PELEKLLYA--DDGGVRVVYRPFPLLG   41 (98)
T ss_pred             CeEEECCCCHhHHhhh-HHHHHHHhh--cCCcEEEEEeccccCC
Confidence            4678889999999995 567777643  6788999999987554

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=86.43  E-value=1.4  Score=33.67  Aligned_cols=44  Identities=16%  Similarity=0.190  Sum_probs=25.9

Q ss_pred             CCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEee
Q 030664           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG   84 (173)
Q Consensus        37 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G   84 (173)
                      ....++++.|+.|+=||||++++ =.|..+.+   ..+.++++++.-.
T Consensus        38 ~~~~~~~ilvi~e~WCgD~~~~v-P~l~kiae---~~p~i~~~~i~rd   81 (129)
T PF14595_consen   38 SIQKPYNILVITETWCGDCARNV-PVLAKIAE---ANPNIEVRIILRD   81 (129)
T ss_dssp             T--S-EEEEEE--TT-HHHHHHH-HHHHHHHH---H-TTEEEEEE-HH
T ss_pred             hcCCCcEEEEEECCCchhHHHHH-HHHHHHHH---hCCCCeEEEEEec
Confidence            45677899999999999999885 23444443   3446788887654

>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE

Probab=86.41  E-value=1.4  Score=34.32  Aligned_cols=127  Identities=15%  Similarity=0.097  Sum_probs=70.9

Q ss_pred             eEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeeeeeeecC-------------------CCceeecCChh
Q 030664           42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRAN-------------------NSTFDCQHGPS  102 (173)
Q Consensus        42 V~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~A~~~~~-------------------~~~f~CQHG~~  102 (173)
                      ++|.+|+.-+||.|-.. ..+|..+...  +...++|++.+++=......                   ..+..-+.++.
T Consensus         1 ~~i~~~~D~~cp~c~~~-~~~l~~l~~~--~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   77 (193)
T cd03025           1 LELYYFIDPLCGWCYGF-EPLLEKLKEE--YGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQPFGEDYL   77 (193)
T ss_pred             CeEEEEECCCCchhhCc-hHHHHHHHHH--hCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCCccCchhH
Confidence            46899999999999877 3456666554  54568888888764332111                   00011111111


Q ss_pred             hhh---cChhhhhhhccc-c--ccccccceeecccccc-----cccccchHHhHHhhcCCCchhhhcccCCchhhHHHHh
Q 030664          103 ECL---LNTVEACAIDSW-P--ELNKHFPFIYCIESLV-----YEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSLA  171 (173)
Q Consensus       103 EC~---gN~~qaCai~~~-~--~~~~~l~fI~Cm~~~~-----~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~  171 (173)
                      +=.   .|...++..-.. .  ......+|..-+....     +.+..+.....+.+.|+|.+.+.++.++++.++.+.+
T Consensus        78 ~~~~~~~~s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~l~~ia~~~Gld~~~~~~~~~s~~~~~~l~~  157 (193)
T cd03025          78 ELLLFDLDSAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRDLADTEVLRELAIELGLDVEEFLEDFQSDEAKQAIQE  157 (193)
T ss_pred             hcccCCCCchHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHcChHHHHHHHH
Confidence            000   122323322111 1  1224455655554321     1122335678899999999999999998888777665

FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=83.90  E-value=2.6  Score=28.04  Aligned_cols=26  Identities=23%  Similarity=0.513  Sum_probs=19.9

Q ss_pred             eEEEEEEEeCChhhHHHHHHhHHHHHh
Q 030664           42 VKLGLYYESLCPYSANFIINYLVKIFE   68 (173)
Q Consensus        42 V~V~vyyESlCPd~~~Fi~~qL~P~~~   68 (173)
                      |+|++|+-+-||.|+... ..|..+..
T Consensus         1 ~~v~~f~~~~C~~C~~~~-~~l~~l~~   26 (82)
T TIGR00411         1 VKIELFTSPTCPYCPAAK-RVVEEVAK   26 (82)
T ss_pred             CEEEEEECCCCcchHHHH-HHHHHHHH
Confidence            789999999999999773 34444443

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=83.50  E-value=2.6  Score=27.27  Aligned_cols=17  Identities=24%  Similarity=0.755  Sum_probs=15.6

Q ss_pred             eEEEEEEEeCChhhHHH
Q 030664           42 VKLGLYYESLCPYSANF   58 (173)
Q Consensus        42 V~V~vyyESlCPd~~~F   58 (173)
                      |+|.+|+-+-||.|++.
T Consensus         1 ~~v~~f~~~~C~~C~~~   17 (67)
T cd02973           1 VNIEVFVSPTCPYCPDA   17 (67)
T ss_pred             CEEEEEECCCCCCcHHH
Confidence            78999999999999876

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=82.79  E-value=0.51  Score=37.75  Aligned_cols=76  Identities=13%  Similarity=0.149  Sum_probs=44.7

Q ss_pred             cCCCCCCCCCCCCCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCce-eeEEEEEeeeeeeecC-CCceeecCChh
Q 030664           25 SGSVSASRTSPSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSI-VDLHLSPWGNAKIRAN-NSTFDCQHGPS  102 (173)
Q Consensus        25 ~~~~~~~~~~~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~-vdl~lvP~G~A~~~~~-~~~f~CQHG~~  102 (173)
                      .+.++..+-....=..||-+-.|--.-||+||.| +-.|.++|+.  +.+- =.|++|-.-.=+...+ ..-+.++||+-
T Consensus        18 ~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~F-TP~Lk~fYe~--l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W   94 (157)
T KOG2501|consen   18 RKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDF-TPILKDFYEE--LKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDW   94 (157)
T ss_pred             eccCCccchHhHhhCCcEEEEEEEEEECCchhhC-CchHHHHHHH--HHhcCCceEEEEEecCCCHHHHHHHHHhcCCCe
Confidence            4555555544434455776666667789999999 5678888876  5443 1455554322211110 13568888875


Q ss_pred             h
Q 030664          103 E  103 (173)
Q Consensus       103 E  103 (173)
                      =
T Consensus        95 ~   95 (157)
T KOG2501|consen   95 L   95 (157)
T ss_pred             E
Confidence            3

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=81.61  E-value=3.3  Score=32.98  Aligned_cols=44  Identities=18%  Similarity=0.191  Sum_probs=33.0

Q ss_pred             CCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeeeee
Q 030664           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAK   87 (173)
Q Consensus        37 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~A~   87 (173)
                      ..+.++.|.+|.--.||+|+++- ..|.+      ..+-+.|+++||.-..
T Consensus        74 ~~~~~~~i~~f~D~~Cp~C~~~~-~~l~~------~~~~v~v~~~~~p~~~  117 (197)
T cd03020          74 KGNGKRVVYVFTDPDCPYCRKLE-KELKP------NADGVTVRIFPVPILG  117 (197)
T ss_pred             CCCCCEEEEEEECCCCccHHHHH-HHHhh------ccCceEEEEEEcCcCC
Confidence            44578999999999999999995 44555      2345788888886443

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	97.07
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	96.45
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	96.34
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	96.29
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	95.6
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	95.56
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	95.43
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	94.94
1z6m_A	175	Conserved hypothetical protein; structural genomic	94.54
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	91.31
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	90.87
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	90.2
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	89.68
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	89.59
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	88.6
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	86.37
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	85.88
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	83.34
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	82.41
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	82.3
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	80.04

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=97.07  E-value=0.0023  Score=48.12  Aligned_cols=116  Identities=12%  Similarity=0.128  Sum_probs=70.4

Q ss_pred             CCCCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeeeeeeecCCCceeecCChhhhhcChhhhhhh
Q 030664           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAI  114 (173)
Q Consensus        35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~A~~~~~~~~f~CQHG~~EC~gN~~qaCai  114 (173)
                      ....+.||.|.+|+-..||.|++|. ..|.+++.+  ..+ +.|.++++.-.             |+.-=...+.-.|+.
T Consensus        17 ~G~~~a~v~i~~f~d~~Cp~C~~~~-~~l~~l~~~--~~~-v~~~~~~~p~~-------------~~~s~~aa~~~~~a~   79 (175)
T 3gyk_A           17 LGNPEGDVTVVEFFDYNCPYCRRAM-AEVQGLVDA--DPN-VRLVYREWPIL-------------GEGSDFAARAALAAR   79 (175)
T ss_dssp             EECTTCSEEEEEEECTTCHHHHHHH-HHHHHHHHH--CTT-EEEEEEECCCS-------------CHHHHHHHHHHHHGG
T ss_pred             cCCCCCCEEEEEEECCCCccHHHHH-HHHHHHHHh--CCC-EEEEEEeCCCC-------------CCChHHHHHHHHHHH
Confidence            3456788999999999999999995 467777765  666 77777766321             121111222222332


Q ss_pred             ccccccccccceeecccccccccccchHHhHHhhcCCCchhhhcccCCchhhHHHHh
Q 030664          115 DSWPELNKHFPFIYCIESLVYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSLA  171 (173)
Q Consensus       115 ~~~~~~~~~l~fI~Cm~~~~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~  171 (173)
                      ..    ..+++|..=+.........+.....+++.|+|.+.+.+|.+++.....+.+
T Consensus        80 ~~----~~~~~~~~~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~  132 (175)
T 3gyk_A           80 QQ----GKYEAFHWALMGMSGKANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQ  132 (175)
T ss_dssp             GG----TCHHHHHHHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HH----hHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHH
Confidence            21    223333222222111112334667899999999999999998877665544

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=96.45  E-value=0.0083  Score=45.59  Aligned_cols=111  Identities=12%  Similarity=0.008  Sum_probs=66.0

Q ss_pred             CCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeeeeeeecCCCceeecCChhhhhcChhhhhhhcccc
Q 030664           39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWP  118 (173)
Q Consensus        39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~A~~~~~~~~f~CQHG~~EC~gN~~qaCai~~~~  118 (173)
                      +.+|.|.+|+--.||.|..|. ..|.++..+  ..+.+.++.+|+...   .+ +       .   ...+.-.|+-.   
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~-~~l~~l~~~--~~~~v~~~~~p~~~~---~~-s-------~---~a~~a~~~a~~---   83 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFD-SKLQAWGAR--QAKDVRFTLVPAVFG---GV-W-------D---PFARAYLAADV---   83 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHH-HHHHHHHHT--SCTTEEEEEEECCCS---TT-H-------H---HHHHHHHHHHH---
T ss_pred             CCCeEEEEEECCCChhHhhhh-HHHHHHHHh--cCCceEEEEeCcccC---CC-c-------H---HHHHHHHHHHH---
Confidence            578999999999999999995 456666654  666788888887321   00 0       0   01111122211   


Q ss_pred             ccccccceeecccccc--------cccccchHHhHHhhcCCCchhhhcccCCchhhHHHH
Q 030664          119 ELNKHFPFIYCIESLV--------YEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSL  170 (173)
Q Consensus       119 ~~~~~l~fI~Cm~~~~--------~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~  170 (173)
                       +...++|..=+....        .....+.....+++.|+|.+.+.+|.++....+.+.
T Consensus        84 -~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~  142 (193)
T 2rem_A           84 -LGVAKRSHTAMFEAIHEKGSVPIQNVGPDELAVFYAGYGVQPDRFVATFNGPEVEKRFQ  142 (193)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCCSCSTTCCHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHH
T ss_pred             -cCcHHHHHHHHHHHHHHhcccCcCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHH
Confidence             112223322222110        111234466789999999999999998877665554

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=96.34  E-value=0.0077  Score=45.86  Aligned_cols=118  Identities=13%  Similarity=0.144  Sum_probs=67.2

Q ss_pred             CCCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCC--ceeeEEEEEeeeeeeecCCCceeecCChhhhhcChhhhhh
Q 030664           36 SDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL--SIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACA  113 (173)
Q Consensus        36 ~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~--d~vdl~lvP~G~A~~~~~~~~f~CQHG~~EC~gN~~qaCa  113 (173)
                      ...+.+|.|.+|+--.||.|.+|- ..+.|.+.+ ++.  ..+.|.+.||.-             ||+.-=...+.-.|+
T Consensus         7 G~~~a~~~i~~f~D~~Cp~C~~~~-~~l~~~l~~-~~~~~~~v~~~~~~~p~-------------~~~~s~~aa~a~~~a   71 (186)
T 3bci_A            7 SSKNGKPLVVVYGDYKCPYCKELD-EKVMPKLRK-NYIDNHKVEYQFVNLAF-------------LGKDSIVGSRASHAV   71 (186)
T ss_dssp             ----CCCEEEEEECTTCHHHHHHH-HHHHHHHHH-HTTTTTSSEEEEEECCC-------------SCTTHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEEECCCChhHHHHH-HHHHHHHHH-HhccCCeEEEEEEecCc-------------CCcchHHHHHHHHHH
Confidence            345678999999999999999994 456666643 243  357888888742             122111222233344


Q ss_pred             hccccccccccceeeccccccc-----ccccchHHhHHhhcCCCchh---hhccc--CCchhhHHHH
Q 030664          114 IDSWPELNKHFPFIYCIESLVY-----EHKYSQWETCFDKLELDPKP---IVDCY--TSGYGTQVSL  170 (173)
Q Consensus       114 i~~~~~~~~~l~fI~Cm~~~~~-----~~~~~~~~~Ca~~~gld~~~---I~~C~--~~~~G~~Ll~  170 (173)
                      -..-  +.+.++|..=+.....     ....+.....|++.|+|.+.   +.+|.  +++...+.+.
T Consensus        72 ~~~~--~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~~~~~~v~  136 (186)
T 3bci_A           72 LMYA--PKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAE  136 (186)
T ss_dssp             HHHC--GGGHHHHHHHHHHTCCCTTSCCCCHHHHHHHHHTTCCCHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHhC--HHHHHHHHHHHHhcCcccCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence            3221  1233444333322211     11233466788999999988   99998  7766555443

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=96.29  E-value=0.0054  Score=48.27  Aligned_cols=119  Identities=9%  Similarity=0.056  Sum_probs=73.7

Q ss_pred             CCCCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCC--ceeeEEEEEeeeeeeecCCCceeecCChhhhhcChhhhh
Q 030664           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLL--SIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEAC  112 (173)
Q Consensus        35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~--d~vdl~lvP~G~A~~~~~~~~f~CQHG~~EC~gN~~qaC  112 (173)
                      ....+.+|.|..|.-=.||.|++|- ..+.|.+.+ ++.  ..+.|.+.|+--             ||+.-=..-..-.|
T Consensus        24 ~G~~~a~vtvvef~D~~CP~C~~~~-~~~~~~l~~-~~~~~g~v~~~~~~~p~-------------~~~~s~~Aa~aa~a   88 (202)
T 3gha_A           24 LGKDDAPVTVVEFGDYKCPSCKVFN-SDIFPKIQK-DFIDKGDVKFSFVNVMF-------------HGKGSRLAALASEE   88 (202)
T ss_dssp             ESCTTCSEEEEEEECTTCHHHHHHH-HHTHHHHHH-HTTTTTSEEEEEEECCC-------------SHHHHHHHHHHHHH
T ss_pred             ecCCCCCEEEEEEECCCChhHHHHH-HHhhHHHHH-HhccCCeEEEEEEecCc-------------cchhHHHHHHHHHH
Confidence            3456789999999999999999994 456776654 353  467788777631             23211111122223


Q ss_pred             hhccccccccccceeecccccccc-----cccchHHhHHhh-cCCCchhhhcccCCchhhHHHH
Q 030664          113 AIDSWPELNKHFPFIYCIESLVYE-----HKYSQWETCFDK-LELDPKPIVDCYTSGYGTQVSL  170 (173)
Q Consensus       113 ai~~~~~~~~~l~fI~Cm~~~~~~-----~~~~~~~~Ca~~-~gld~~~I~~C~~~~~G~~Ll~  170 (173)
                      +...  ++.++++|..=+......     ...+.....|++ .|+|.+.+.+|.++....+.+.
T Consensus        89 ~~~~--~~~~f~~~~~aLf~~~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s~~~~~~v~  150 (202)
T 3gha_A           89 VWKE--DPDSFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETFASQVE  150 (202)
T ss_dssp             HHHH--CGGGHHHHHHHHHHHCCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHHTTTHHHHH
T ss_pred             HHhh--CHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHHHH
Confidence            3221  345667776655543211     122346678898 8999999999987766555443

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=95.60  E-value=0.019  Score=43.75  Aligned_cols=113  Identities=10%  Similarity=-0.018  Sum_probs=66.9

Q ss_pred             CCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeeeeeeecCCCceeecCChhhhhcChhhhhhhccc
Q 030664           38 VNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSW  117 (173)
Q Consensus        38 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~A~~~~~~~~f~CQHG~~EC~gN~~qaCai~~~  117 (173)
                      .+.+|.|..|+-..||.|++|-. .| +-+.+ ++.+.+.++.+|...             |+... ...+.-.|+-.  
T Consensus        23 ~~~~~~i~~f~d~~Cp~C~~~~~-~l-~~l~~-~~~~~v~~~~~p~~~-------------~~~~~-~aa~a~~aa~~--   83 (192)
T 3h93_A           23 QPGKIEVVELFWYGCPHCYAFEP-TI-VPWSE-KLPADVHFVRLPALF-------------GGIWN-VHGQMFLTLES--   83 (192)
T ss_dssp             STTSEEEEEEECTTCHHHHHHHH-HH-HHHHH-TCCTTEEEEEEECCC-------------STHHH-HHHHHHHHHHH--
T ss_pred             CCCCCEEEEEECCCChhHHHhhH-HH-HHHHH-hCCCCeEEEEEehhh-------------ccchH-HHHHHHHHHHH--
Confidence            46789999999999999999953 44 44433 477777788777521             11100 00111122211  


Q ss_pred             cccccccceeecccccc-----cccccchHHhHHhhcCCCchhhhcccCCchhhHHHHh
Q 030664          118 PELNKHFPFIYCIESLV-----YEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSLA  171 (173)
Q Consensus       118 ~~~~~~l~fI~Cm~~~~-----~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~  171 (173)
                        +.+.++|..=+....     .....+.....+++.|+|.+.+.+|.+++...+.+.+
T Consensus        84 --~g~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~  140 (192)
T 3h93_A           84 --MGVEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEK  140 (192)
T ss_dssp             --HTCCHHHHHHHHHHHHTSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHH
T ss_pred             --cCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHH
Confidence              123344433333221     1122345678899999999999999998777665543

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=95.56  E-value=0.024  Score=45.62  Aligned_cols=116  Identities=8%  Similarity=0.035  Sum_probs=69.0

Q ss_pred             CCCCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccC--CceeeEEEEEeeeeeeecCCCceeecCChhhhhcChhhhh
Q 030664           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDL--LSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEAC  112 (173)
Q Consensus        35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l--~d~vdl~lvP~G~A~~~~~~~~f~CQHG~~EC~gN~~qaC  112 (173)
                      ....+.+|.|..|.-=.||+|++|- ..+.|.+.+ ++  ...+.|.+.||-- .             +.--.+-+.-.|
T Consensus        34 ~G~~~A~vtIvef~Dy~CP~C~~~~-~~~~~~l~~-~~~~~g~V~~v~~~~p~-~-------------~~s~~Aa~aa~a   97 (226)
T 3f4s_A           34 LGDPKAPILMIEYASLTCYHCSLFH-RNVFPKIKE-KYIDTGKMLYIFRHFPL-D-------------YRGLKAAMLSHC   97 (226)
T ss_dssp             ESCTTCSEEEEEEECTTCHHHHHHH-HHTHHHHHH-HHTTTTSEEEEEEECCC-S-------------HHHHHHHHHGGG
T ss_pred             cCCCCCCEEEEEEECCCCHHHHHHH-HHHHHHHHH-HcccCCeEEEEEEeCCC-C-------------hhHHHHHHHHHH
Confidence            4567789999999999999999994 345666643 24  2456666665521 0             110111122233


Q ss_pred             hhccccccccccceeeccccccc------ccccchHHhHHhhcCCCchhhhcccCCchhhHHHH
Q 030664          113 AIDSWPELNKHFPFIYCIESLVY------EHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSL  170 (173)
Q Consensus       113 ai~~~~~~~~~l~fI~Cm~~~~~------~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~  170 (173)
                      +    .++.++|+|..=+.....      ....+.....|++.|+|.+.+.+|.++....+.+.
T Consensus        98 a----~~~~~f~~~~~aLF~~q~~~~~~~~~~~~~L~~iA~~~Gld~~~~~~~l~s~~~~~~v~  157 (226)
T 3f4s_A           98 Y----EKQEDYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKKIMDKIV  157 (226)
T ss_dssp             C----CSHHHHHHHHHHHHHTGGGSCSSSTTCCHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHH
T ss_pred             h----hChHHHHHHHHHHHHhCHhhcccccCcHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHH
Confidence            3    123344555444332210      01234566789999999999999998876665544

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=95.43  E-value=0.067  Score=40.74  Aligned_cols=112  Identities=10%  Similarity=-0.065  Sum_probs=65.1

Q ss_pred             CCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeeeeeeecCCCceeecCChhhhhcChhhhhhhccc
Q 030664           38 VNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSW  117 (173)
Q Consensus        38 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~A~~~~~~~~f~CQHG~~EC~gN~~qaCai~~~  117 (173)
                      ...++.|..|+-..||.|+++. ..|..+.+  ++.+.+.+..+|.-..   .+ +          =...+.-.|+...-
T Consensus        23 ~~~~~~vv~f~d~~Cp~C~~~~-~~l~~l~~--~~~~~v~~~~~~~~~~---~~-s----------~~aa~a~~aa~~~g   85 (195)
T 3hd5_A           23 TPGKIEVLEFFAYTCPHCAAIE-PMVEDWAK--TAPQDVVLKQVPIAFN---AG-M----------KPLQQLYYTLQALE   85 (195)
T ss_dssp             STTCEEEEEEECTTCHHHHHHH-HHHHHHHH--TCCTTEEEEEEECCSS---GG-G----------HHHHHHHHHHHHTT
T ss_pred             CCCCeEEEEEECCCCccHHHhh-HHHHHHHH--HCCCCeEEEEEecccC---cc-h----------HHHHHHHHHHHhcC
Confidence            4678999999999999999995 34444444  3776677777776320   00 0          01112222222110


Q ss_pred             cccccccceeeccccc-----ccccccchHHhHHhhcCCCchhhhcccCCchhhHHHHh
Q 030664          118 PELNKHFPFIYCIESL-----VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSLA  171 (173)
Q Consensus       118 ~~~~~~l~fI~Cm~~~-----~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~  171 (173)
                           .++|..=+...     ......+.....+++.|+|.+.+.+|.++++.++.+.+
T Consensus        86 -----~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~  139 (195)
T 3hd5_A           86 -----RPDLHPKVFTAIHTERKRLFDKKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQR  139 (195)
T ss_dssp             -----CTTHHHHHHHHHHTSCCCCCSHHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHHHHHHcCHHHHHHHHH
Confidence                 22222211111     11112345677899999999999999998776665544

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=94.94  E-value=0.022  Score=43.35  Aligned_cols=114  Identities=15%  Similarity=0.049  Sum_probs=67.9

Q ss_pred             CCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeeeeeeecCCCceeecCChhhhhcChhhhhhhcc
Q 030664           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS  116 (173)
Q Consensus        37 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~A~~~~~~~~f~CQHG~~EC~gN~~qaCai~~  116 (173)
                      ..+.+|.|..|+-..||.|++|. ..|..+.++  ..+.+.++.+|..-             |+.. =...+.-.|+-. 
T Consensus        19 ~~~~~~~i~~f~d~~Cp~C~~~~-~~l~~l~~~--~~~~v~~~~~p~~~-------------~~~s-~~aa~a~~aa~~-   80 (195)
T 2znm_A           19 EQSGKIEVLEFFGYFCVHCHHFD-PLLLKLGKA--LPSDAYLRTEHVVW-------------QPEM-LGLARMAAAVNL-   80 (195)
T ss_dssp             SSSSSEEEEEEECTTSCCTTSSC-HHHHHHHHH--SCTTEEEEEEECCC-------------SGGG-HHHHHHHHHHHH-
T ss_pred             CCCCCcEEEEEECCCChhHHHHh-HHHHHHHHH--CCCceEEEEecccc-------------Cccc-HHHHHHHHHHHH-
Confidence            34678999999999999999995 346666654  66667788877521             0010 011122222211 


Q ss_pred             ccccccccceeecccccc-----cccccchHHhHHhhc-CCCchhhhcccCCchhhHHHHh
Q 030664          117 WPELNKHFPFIYCIESLV-----YEHKYSQWETCFDKL-ELDPKPIVDCYTSGYGTQVSLA  171 (173)
Q Consensus       117 ~~~~~~~l~fI~Cm~~~~-----~~~~~~~~~~Ca~~~-gld~~~I~~C~~~~~G~~Ll~~  171 (173)
                         +...++|..=+....     .....+.....+++. |+|.+.+.+|.++.+....+.+
T Consensus        81 ---~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~~~v~~  138 (195)
T 2znm_A           81 ---SGLKYQANPAVFKAVYEQKIRLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALK  138 (195)
T ss_dssp             ---HTCHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHTCSSSCHHHHHHHHTSHHHHHHHHH
T ss_pred             ---cCcHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCHHHHHHHhcCHHHHHHHHH
Confidence               123334433332211     111234466788999 9999999999988776665543

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=94.54  E-value=0.052  Score=40.57  Aligned_cols=46  Identities=15%  Similarity=0.317  Sum_probs=36.0

Q ss_pred             CCCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccC--CceeeEEEEEee
Q 030664           36 SDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDL--LSIVDLHLSPWG   84 (173)
Q Consensus        36 ~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l--~d~vdl~lvP~G   84 (173)
                      ...+.+|.|.+|+--.||.|++|- ..+.+.+.+  +  .+.+.|.++||.
T Consensus        23 G~~~a~v~i~~f~D~~Cp~C~~~~-~~~~~~~~~--~~~~~~v~~~~~~~~   70 (175)
T 1z6m_A           23 GESNAPVKMIEFINVRCPYCRKWF-EESEELLAQ--SVKSGKVERIIKLFD   70 (175)
T ss_dssp             SCTTCSEEEEEEECTTCHHHHHHH-HHHHHHHHH--HHHTTSEEEEEEECC
T ss_pred             CCCCCCeEEEEEECCCCcchHHHH-HHHHHHHHH--HhhCCcEEEEEEeCC
Confidence            345678999999999999999995 456776654  5  566888888874

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=91.31  E-value=0.42  Score=37.59  Aligned_cols=115  Identities=8%  Similarity=0.096  Sum_probs=72.6

Q ss_pred             CCCCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccC--CceeeEEEEEeeeeeeecCCCceeecCChhhhhcChhhhh
Q 030664           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDL--LSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEAC  112 (173)
Q Consensus        35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l--~d~vdl~lvP~G~A~~~~~~~~f~CQHG~~EC~gN~~qaC  112 (173)
                      ....+.+|.|.+|.-=.||+|++|- ..+.|.+.+ ++  ...|.+.+.+|-  .           |+... .+-..-.|
T Consensus        10 ~G~~~a~vtivef~D~~Cp~C~~~~-~~~~~~l~~-~~i~~g~v~~v~r~~p--l-----------~~~s~-~aa~aa~~   73 (205)
T 3gmf_A           10 LGNPAAKLRLVEFVSYTCPHCSHFE-IESEGQLKI-GMVQPGKGAIEVRNFV--R-----------DPIDM-TVALITNC   73 (205)
T ss_dssp             ESCTTCSEEEEEEECTTCHHHHHHH-HHHHHHHHH-HTTTTTSEEEEEEECC--C-----------SHHHH-HHHHHHHH
T ss_pred             ecCCCCCeEEEEEECCCCHHHHHHH-HHHHHHHHH-HhccCCeEEEEEEeCC--C-----------CcchH-HHHHHHHh
Confidence            3456789999999999999999995 567888773 25  456777776761  1           21111 12222334


Q ss_pred             hhccccccccccceeecccccccc--------cc--------------------cchHHhHHhhcCCCchhhhcccCCch
Q 030664          113 AIDSWPELNKHFPFIYCIESLVYE--------HK--------------------YSQWETCFDKLELDPKPIVDCYTSGY  164 (173)
Q Consensus       113 ai~~~~~~~~~l~fI~Cm~~~~~~--------~~--------------------~~~~~~Ca~~~gld~~~I~~C~~~~~  164 (173)
                      +     .+.++|+|..=+......        ..                    .......+...|+|.+.+.+|.++..
T Consensus        74 ~-----~~~~f~~~~~~Lf~~q~~~~~~~~~~~~~~~~~w~~~~~~~~l~~ia~~~~L~~~a~~~Gld~~~~~~~l~s~~  148 (205)
T 3gmf_A           74 V-----PPSRFFTLHTAFMRSQAQWIGPLANSTEAQRQRWFNGTFATRTRAIASDFRFYDFMAARGMDRSTLDRCLSNEA  148 (205)
T ss_dssp             S-----CHHHHHHHHHHHHHTHHHHCHHHHHCCHHHHHTTSSSCHHHHHHHHHHHTTHHHHHHTTTCCHHHHHHHHTCHH
T ss_pred             c-----CHhHHHHHHHHHHHcCHHHHhcccccchhhhhccccchhHHHHHhccCHHHHHHHHHHcCCCHHHHHHHHcCHH
Confidence            3     345677776665543210        00                    01244677889999999999999876


Q ss_pred             hhHHHH
Q 030664          165 GTQVSL  170 (173)
Q Consensus       165 G~~Ll~  170 (173)
                      ..+.+.
T Consensus       149 ~~~~v~  154 (205)
T 3gmf_A          149 LAKKLA  154 (205)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655443

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=90.87  E-value=0.41  Score=38.24  Aligned_cols=43  Identities=19%  Similarity=0.351  Sum_probs=33.8

Q ss_pred             CCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEee
Q 030664           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWG   84 (173)
Q Consensus        37 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G   84 (173)
                      ..+.|+.|.+|+--.||+|++|- .+|.+..+.    +.+.|+++||+
T Consensus        94 ~~~ak~~v~~F~D~~Cp~C~~~~-~~l~~~~~~----g~v~v~~~~~p  136 (241)
T 1v58_A           94 KKDAPVIVYVFADPFCPYCKQFW-QQARPWVDS----GKVQLRTLLVG  136 (241)
T ss_dssp             CTTCSEEEEEEECTTCHHHHHHH-HHHHHHHHT----TSEEEEEEECC
T ss_pred             CCCCCeEEEEEECCCChhHHHHH-HHHHHHHhC----CcEEEEEEECC
Confidence            44678999999999999999995 467776653    35778888885

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=90.20  E-value=0.62  Score=35.72  Aligned_cols=112  Identities=13%  Similarity=0.048  Sum_probs=62.4

Q ss_pred             CCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeeeeeeecCCCceeecCChhhhhcChhhhhhhccc
Q 030664           38 VNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSW  117 (173)
Q Consensus        38 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~A~~~~~~~~f~CQHG~~EC~gN~~qaCai~~~  117 (173)
                      ...+|.|..|+--.||.|++|- ..|..+.+  ++.+.+.++.+|....             |.. =...+.-.|+...-
T Consensus        22 ~~~~v~vv~f~d~~Cp~C~~~~-~~l~~~~~--~~~~~v~~~~~p~~~~-------------~~~-~~aa~a~~aa~~~g   84 (193)
T 3hz8_A           22 QAGKVEVLEFFGYFCPHCAHLE-PVLSKHAK--SFKDDMYLRTEHVVWQ-------------KEM-LTLARLAAAVDMAA   84 (193)
T ss_dssp             STTSEEEEEEECTTCHHHHHHH-HHHHHHHT--TCCTTEEEEEEECCCS-------------GGG-HHHHHHHHHHHHHT
T ss_pred             CCCCcEEEEEECCCChhHHHHH-HHHHHHHH--HCCCCeEEEEecCCCC-------------ccc-HHHHHHHHHHHHcC
Confidence            4478999999999999999994 34444444  4777677777776311             110 01111222221111


Q ss_pred             cccccccc--eeecc-----cccccccccchHHhHHhhc-CCCchhhhcccCCchhhHHHH
Q 030664          118 PELNKHFP--FIYCI-----ESLVYEHKYSQWETCFDKL-ELDPKPIVDCYTSGYGTQVSL  170 (173)
Q Consensus       118 ~~~~~~l~--fI~Cm-----~~~~~~~~~~~~~~Ca~~~-gld~~~I~~C~~~~~G~~Ll~  170 (173)
                          .+++  +..=+     .........+....-+++. |+|.+.+.+|.++....+.+.
T Consensus        85 ----~~~~~~~~~~lf~a~~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~  141 (193)
T 3hz8_A           85 ----ADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKVLAAYESPESQARAD  141 (193)
T ss_dssp             ----GGGHHHHHHHHHHHHHTSCCCTTSHHHHHHHHHHCTTTTHHHHHHHHHSHHHHHHHH
T ss_pred             ----chhHHhHHHHHHHHHHHhCcCCCCHHHHHHHHHHccCCCHHHHHHHHcCHHHHHHHH
Confidence                1111  11000     0011111234466778899 999999999998876655544

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=89.68  E-value=0.4  Score=35.88  Aligned_cols=32  Identities=3%  Similarity=-0.091  Sum_probs=25.1

Q ss_pred             chHHhH----HhhcCCCchhhhcccCCchhhHHHHh
Q 030664          140 SQWETC----FDKLELDPKPIVDCYTSGYGTQVSLA  171 (173)
Q Consensus       140 ~~~~~C----a~~~gld~~~I~~C~~~~~G~~Ll~~  171 (173)
                      +.....    +++.|+|.+.+.+|.++++.++.+.+
T Consensus       115 ~~l~~~~~~~a~~~Gld~~~~~~~~~~~~~~~~v~~  150 (195)
T 3c7m_A          115 KDPAAFIKTGLDAAGMSQADFEAALKEPAVQETLEK  150 (195)
T ss_dssp             TCHHHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHcCCCHHHHHHHHcChHHHHHHHH
Confidence            345678    89999999999999998776665543

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=89.59  E-value=0.69  Score=34.04  Aligned_cols=43  Identities=12%  Similarity=0.230  Sum_probs=31.9

Q ss_pred             CCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEe
Q 030664           38 VNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW   83 (173)
Q Consensus        38 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~   83 (173)
                      ...++.|..|.-=.||.|++| ...+.++..+  +.+.+.+.++|+
T Consensus        19 ~~~~~~vvEf~dy~Cp~C~~~-~~~~~~l~~~--~~~~~~~~~~~~   61 (184)
T 4dvc_A           19 ASSSPVVSEFFSFYCPHCNTF-EPIIAQLKQQ--LPEGAKFQKNHV   61 (184)
T ss_dssp             CCSSCEEEEEECTTCHHHHHH-HHHHHHHHHT--SCTTCEEEEEEC
T ss_pred             CCCCCEEEEEECCCCHhHHHH-hHHHHHHHhh--cCCceEEEEEec
Confidence            345677888888899999999 4556666654  777777777765

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=88.60  E-value=0.5  Score=36.40  Aligned_cols=43  Identities=14%  Similarity=0.230  Sum_probs=33.7

Q ss_pred             CCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEe
Q 030664           39 NSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW   83 (173)
Q Consensus        39 ~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~   83 (173)
                      +.+|.|.+|.-=.||+|++|- ..+.|.+.+ ...+.|.|.+.+|
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~~-~~~~~~l~~-~~~g~v~~v~r~~   55 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKAF-FKLDDLLAQ-AGEDNVTVRIRLQ   55 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHHH-TTHHHHHHH-HCTTTEEEEEEEC
T ss_pred             CCCEEEEEEECCCCHhHHHHH-HHHHHHHHH-hCCCCEEEEEEEc
Confidence            678999999999999999994 567887765 2356677776665

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=86.37  E-value=0.75  Score=38.52  Aligned_cols=41  Identities=15%  Similarity=0.230  Sum_probs=33.1

Q ss_pred             CCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeee
Q 030664           38 VNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGN   85 (173)
Q Consensus        38 ~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~   85 (173)
                      .+.+..|.+|.--.||+|+++. .+|.|.+++      ++|++++|+-
T Consensus       145 ~~gk~~I~vFtDp~CPYCkkl~-~~l~~~l~~------~~Vr~i~~Pi  185 (273)
T 3tdg_A          145 ANKDKILYIVSDPMCPHCQKEL-TKLRDHLKE------NTVRMVVVGW  185 (273)
T ss_dssp             GGTTCEEEEEECTTCHHHHHHH-HTHHHHHHH------CEEEEEECCC
T ss_pred             CCCCeEEEEEECcCChhHHHHH-HHHHHHhhC------CcEEEEEeec
Confidence            3567899999999999999995 578876654      7888888763

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=85.88  E-value=2.1  Score=29.37  Aligned_cols=28  Identities=18%  Similarity=0.273  Sum_probs=20.6

Q ss_pred             CCCCCCCCCCeeEEEEEEEeCChhhHHH
Q 030664           31 SRTSPSDVNSKVKLGLYYESLCPYSANF   58 (173)
Q Consensus        31 ~~~~~~~~~~kV~V~vyyESlCPd~~~F   58 (173)
                      ..+..+....+..|.+|+-.-||.|++.
T Consensus         6 ~~~l~~~~~~~~~v~~f~~~~C~~C~~~   33 (100)
T 1wjk_A            6 SGNLSASNRALPVLTLFTKAPCPLCDEA   33 (100)
T ss_dssp             CCCCCCSCCCCCEEEEEECSSCHHHHHH
T ss_pred             chhhhhccCCCCEEEEEeCCCCcchHHH
Confidence            3344445566778999999999999854

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=83.34  E-value=1.9  Score=33.10  Aligned_cols=127  Identities=10%  Similarity=0.024  Sum_probs=70.0

Q ss_pred             eEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeeeeeeecCC-------------------CceeecCChh
Q 030664           42 VKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANN-------------------STFDCQHGPS  102 (173)
Q Consensus        42 V~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~A~~~~~~-------------------~~f~CQHG~~  102 (173)
                      ++|++|+--.||.|-.+ ...|..+...  +.+-++|+++|||-......+                   .++.-...+.
T Consensus         3 ~~I~~~~D~~CP~cy~~-~~~l~~l~~~--~~~~v~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~r~a~~~G~~f~~~~~   79 (208)
T 3kzq_A            3 IKLYYVHDPMCSWCWGY-KPTIEKLKQQ--LPGVIQFEYVVGGLAPDTNLPMPPEMQQKLEGIWKQIETQLGTKFNYDFW   79 (208)
T ss_dssp             EEEEEEECTTCHHHHHH-HHHHHHHHHH--SCTTSEEEEEECCSSCSCCCBCCHHHHHHHHHHHHHHHHHHCCCCCTTHH
T ss_pred             eEEEEEECCCCchhhhh-hHHHHHHHHh--CCCCceEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHCCcccHHHH
Confidence            68999999999999966 4455555554  777899999998732211000                   0001111100


Q ss_pred             -h--hhcChhhhhhhcc-ccccccccceeeccccc-----ccccccchHHhHHhhcCCCchhhhcccCCchhhHHHHh
Q 030664          103 -E--CLLNTVEACAIDS-WPELNKHFPFIYCIESL-----VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSLA  171 (173)
Q Consensus       103 -E--C~gN~~qaCai~~-~~~~~~~l~fI~Cm~~~-----~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~  171 (173)
                       +  =..|...++-+-. ...+....++..=+...     .+....+.....|++.|+|.+.+.++.++++.++.+.+
T Consensus        80 ~~~~~~~~s~~a~r~~~aa~~~g~~~~~~~~l~~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~  157 (208)
T 3kzq_A           80 KLCTPVRSTYQSCRAVIAAGFQDSYEQMLEAIQHAYYLRAMPPHEEATHLQLAKEIGLNVQQFKNDMDGTLLEGVFQD  157 (208)
T ss_dssp             HHSCCBCCCHHHHHHHHHHHTTTCHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHH
T ss_pred             hcCCCcCCcHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHH
Confidence             0  0122223321111 11122234444433321     11123345678899999999999999998877665544

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=82.41  E-value=1.5  Score=33.37  Aligned_cols=117  Identities=10%  Similarity=-0.065  Sum_probs=62.4

Q ss_pred             CeeEEEEEEEeCChhhHHHHHHh-HHHHHhhccCCceeeEEEEEeeeeeeecCCCceeecCChhhhhcChhhhhhhcccc
Q 030664           40 SKVKLGLYYESLCPYSANFIINY-LVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDSWP  118 (173)
Q Consensus        40 ~kV~V~vyyESlCPd~~~Fi~~q-L~P~~~~~~l~d~vdl~lvP~G~A~~~~~~~~f~CQHG~~EC~gN~~qaCai~~~~  118 (173)
                      .++.|..|+--.||.|++|-... +.|.|.+ .+.+.+.|.++|+--.  ... +.          ...+.-.|+...- 
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~~-s~----------~aa~a~~aA~~~g-   78 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRH-VLPQGSRMVKYHVSLL--GPL-GH----------ELTRAWALAMVMK-   78 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHT-TCCTTCCEEEEECSSS--STT-HH----------HHHHHHHHHHHHT-
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHH-hCCCCCEEEEEechhc--ccc-cH----------HHHHHHHHHHHcC-
Confidence            35678889999999999995332 3466654 5677778887776321  000 00          0001111221110 


Q ss_pred             cccccc-ceeecccccccccccchHHhHHhhc-CCCchhhhcccCCchhhHHHHh
Q 030664          119 ELNKHF-PFIYCIESLVYEHKYSQWETCFDKL-ELDPKPIVDCYTSGYGTQVSLA  171 (173)
Q Consensus       119 ~~~~~l-~fI~Cm~~~~~~~~~~~~~~Ca~~~-gld~~~I~~C~~~~~G~~Ll~~  171 (173)
                      ...+.+ .+..=+.........+.....+++. |+|.+.+.+|.++....+.+.+
T Consensus        79 ~~~~~~~~lf~a~~~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~  133 (189)
T 3l9v_A           79 ETDVIEKAFFTAGMVEKRLHSPDDVRRVFMSATGISRGEYDRSIKSPAVNDMVAL  133 (189)
T ss_dssp             CHHHHHHHHHHHHTTTCCCCSHHHHHHHHHHHHCCCHHHHHHHTTSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhccCCCHHHHHHHHHHccCCCHHHHHHHHhhHHHHHHHHH
Confidence            000000 0000000000012234466789999 9999999999998877665543

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=82.30  E-value=1.2  Score=33.90  Aligned_cols=128  Identities=16%  Similarity=0.183  Sum_probs=67.1

Q ss_pred             CeeEEEEEEEeCChhhHHHHHHhHHHHHhhccC-CceeeEEEEEeeeeeeecCCC-------------------ceeecC
Q 030664           40 SKVKLGLYYESLCPYSANFIINYLVKIFEDVDL-LSIVDLHLSPWGNAKIRANNS-------------------TFDCQH   99 (173)
Q Consensus        40 ~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l-~d~vdl~lvP~G~A~~~~~~~-------------------~f~CQH   99 (173)
                      .+++|++|+--.||.|..+  .++.+.+..  + ..-++|+++||+-......+.                   ++.-..
T Consensus         6 ~~~~I~~f~D~~CP~C~~~--~~~~~~l~~--~~~~~v~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~a~~~g~~~~~   81 (216)
T 2in3_A            6 EKPVLWYIADPMCSWCWGF--APVIENIRQ--EYSAFLTVKIMPGGLRPGTNTPLLPEKRAQILHHWHSVHITTGQPFTF   81 (216)
T ss_dssp             CCCEEEEEECTTCHHHHHH--HHHHHHHHH--HHTTTCEEEEEECC----CCSBCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             cceeEEEEECCCCchhhcc--hHHHHHHHh--cCCCCeEEEEeecccccCCCCCCCHHHHHHHHHHHHHHHHHHCCccCh
Confidence            3589999999999999943  455565554  3 234899999987432111000                   000000


Q ss_pred             C---hhhhhcChhhhhhhcc-cccc--ccccceeecccccc-----cccccchHHhHHhhcCCCchhhhcccCCchhhHH
Q 030664          100 G---PSECLLNTVEACAIDS-WPEL--NKHFPFIYCIESLV-----YEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQV  168 (173)
Q Consensus       100 G---~~EC~gN~~qaCai~~-~~~~--~~~l~fI~Cm~~~~-----~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~L  168 (173)
                      .   +..=..|...+..+-. ...+  .+.++|..=+....     +....+.....|++.|+|.+.+.+|.++++.++.
T Consensus        82 ~~~~~~~~~~~s~~a~r~~~~a~~~~~~~~~~~~~~lf~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~  161 (216)
T 2in3_A           82 ENALPEGFIYDTEPACRGVVSVSLIEPEKVFPFFAAIQRAFYVGQEDVAQLAILKKLAVDLGIPESRFTPVFQSDEAKQR  161 (216)
T ss_dssp             TTCSCTTCBCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTTCCCTTSHHHHHHHHHHTTCCHHHHHHHHHSHHHHHH
T ss_pred             HHHccCCcccCcHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcchHHHHH
Confidence            0   0001123333322111 1111  34455544444321     1112344668899999999999999988776655


Q ss_pred             HHh
Q 030664          169 SLA  171 (173)
Q Consensus       169 l~~  171 (173)
                      +.+
T Consensus       162 v~~  164 (216)
T 2in3_A          162 TLA  164 (216)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=80.04  E-value=2  Score=27.14  Aligned_cols=38  Identities=18%  Similarity=0.408  Sum_probs=25.4

Q ss_pred             eeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEE
Q 030664           41 KVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLS   81 (173)
Q Consensus        41 kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lv   81 (173)
                      ++.|.+||-+-||.|+++. ..|..+.+.  +.+.+.+..+
T Consensus         3 ~~~vv~f~~~~C~~C~~~~-~~l~~~~~~--~~~~~~~~~v   40 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAK-RVVEEVANE--MPDAVEVEYI   40 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHH-HHHHHHHHH--CSSSEEEEEE
T ss_pred             ceEEEEEeCCCCCchHHHH-HHHHHHHHH--cCCceEEEEE
Confidence            5789999999999999884 344444443  5544444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	94.22
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	94.19
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	91.32
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	88.75
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	81.04
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	80.84

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=94.22  E-value=0.048  Score=38.71  Aligned_cols=120  Identities=11%  Similarity=0.022  Sum_probs=65.4

Q ss_pred             CCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeeeeeeecCCCceeecCChhhhhcChhhhhhhcc
Q 030664           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGNAKIRANNSTFDCQHGPSECLLNTVEACAIDS  116 (173)
Q Consensus        37 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~A~~~~~~~~f~CQHG~~EC~gN~~qaCai~~  116 (173)
                      ..+.++.|..|.-=.||.|++| ...+.+.+.+  +.+.+.+.++|+--.....        +    =...+..+++...
T Consensus        15 p~~~~~~Ivef~d~~Cp~C~~~-~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~~~~~~~   79 (181)
T d1beda_          15 PASSSPVVSEFFSFYCPHCNTF-EPIIAQLKQQ--LPEGAKFQKNHVSFMGGNM--------G----QAMSKAYATMIAL   79 (181)
T ss_dssp             CCCSSCEEEEEECTTCHHHHHH-HHHHHHHHHT--SCTTCEEEEEECSSSSGGG--------H----HHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEEECCCCccchhh-hhhhhhHhhh--cccccceeEEecccccccc--------H----HHHHHHHHHHHHh
Confidence            3456778888888899999999 5667777775  7666777666652211000        0    0011122222111


Q ss_pred             ccccccccceeeccccc-ccccccchHHhHHhhcCCCchhhhcccCCchhhHHHHh
Q 030664          117 WPELNKHFPFIYCIESL-VYEHKYSQWETCFDKLELDPKPIVDCYTSGYGTQVSLA  171 (173)
Q Consensus       117 ~~~~~~~l~fI~Cm~~~-~~~~~~~~~~~Ca~~~gld~~~I~~C~~~~~G~~Ll~~  171 (173)
                      -.....+..+..=.... ......+....-+...|+|.+.+.+|.++++-++.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~  135 (181)
T d1beda_          80 EVEDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRR  135 (181)
T ss_dssp             TCHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHhccccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHH
Confidence            10000000000001111 11122334567788999999999999999887777654

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.041  Score=40.11  Aligned_cols=46  Identities=17%  Similarity=0.310  Sum_probs=37.5

Q ss_pred             CCCCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeee
Q 030664           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGN   85 (173)
Q Consensus        35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~   85 (173)
                      ....+.++.|.+|..=.||+|++|. .++.+..++    ..+.+.++||+-
T Consensus        31 ~G~~~a~~tv~vF~D~~CP~C~~~~-~~l~~l~~~----~~v~v~~~~~~~   76 (169)
T d1v58a1          31 DGKKDAPVIVYVFADPFCPYCKQFW-QQARPWVDS----GKVQLRTLLVGV   76 (169)
T ss_dssp             ESCTTCSEEEEEEECTTCHHHHHHH-HHHHHHHHT----TSEEEEEEECCC
T ss_pred             eCCCCCCEEEEEEECCCCcchHHHH-HHHHHHHhc----cceeEEEEeccc
Confidence            4567788999999999999999996 467887764    358899999875

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.32  E-value=0.098  Score=36.88  Aligned_cols=47  Identities=15%  Similarity=0.318  Sum_probs=33.1

Q ss_pred             CCCCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCc--eeeEEEEEee
Q 030664           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLS--IVDLHLSPWG   84 (173)
Q Consensus        35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d--~vdl~lvP~G   84 (173)
                      .+..+.+|.|..|..=.||.|++|- ..+.++..+  ..+  .+.+.++|+.
T Consensus        19 ~G~~~a~v~I~ef~d~~Cp~C~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~   67 (172)
T d1z6ma1          19 IGESNAPVKMIEFINVRCPYCRKWF-EESEELLAQ--SVKSGKVERIIKLFD   67 (172)
T ss_dssp             ESCTTCSEEEEEEECTTCHHHHHHH-HHHHHHHHH--HHHTTSEEEEEEECC
T ss_pred             ecCCCCCEEEEEEECCCCHhHHHHH-HHHhhhhhh--hccccceeeeecccc
Confidence            4566779999999999999999994 456666554  433  3444555554

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=88.75  E-value=0.31  Score=34.45  Aligned_cols=44  Identities=11%  Similarity=0.169  Sum_probs=33.4

Q ss_pred             CCCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEeee
Q 030664           36 SDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPWGN   85 (173)
Q Consensus        36 ~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~G~   85 (173)
                      ...+.|+.|.+|.-=.||+|++| ..++.+..+.     ..++++++|..
T Consensus        22 g~~~ak~~I~~FsD~~CPyC~~~-~~~l~~l~~~-----~~~v~~~~~~~   65 (150)
T d1t3ba1          22 PAKNEKHVVTVFMDITCHYCHLL-HQQLKEYNDL-----GITVRYLAFPR   65 (150)
T ss_dssp             CCTTCSEEEEEEECTTCHHHHHH-HTTHHHHHHT-----TEEEEEEECCS
T ss_pred             CCCCCCEEEEEEECCCCHHHHHH-hHHHHHHhcc-----CceEEEEEecc
Confidence            56678899999999999999998 4566666542     35777777643

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.04  E-value=0.84  Score=32.35  Aligned_cols=42  Identities=14%  Similarity=0.096  Sum_probs=28.7

Q ss_pred             CCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEE
Q 030664           37 DVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSP   82 (173)
Q Consensus        37 ~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP   82 (173)
                      .-..++.|-+++++=||||++.+- -|..+...  . +.++|++|-
T Consensus        51 ~~~~~~~~l~~~~tWC~~C~~~~P-~l~~l~~~--~-~~~~~~~i~   92 (166)
T d1z6na1          51 RIERRYRLLVAGEMWCPDCQINLA-ALDFAQRL--Q-PNIELAIIS   92 (166)
T ss_dssp             TCCSCEEEEEECCTTCHHHHHHHH-HHHHHHHH--C-TTEEEEEEC
T ss_pred             HhcCCeEEEEEEeCcCccHHHHHH-HHHHHHHH--C-CCCcEEEEE
Confidence            446789999999999999998852 23333332  2 345676653

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.84  E-value=1.2  Score=31.18  Aligned_cols=43  Identities=7%  Similarity=0.147  Sum_probs=29.7

Q ss_pred             CCCCCCeeEEEEEEEeCChhhHHHHHHhHHHHHhhccCCceeeEEEEEe
Q 030664           35 PSDVNSKVKLGLYYESLCPYSANFIINYLVKIFEDVDLLSIVDLHLSPW   83 (173)
Q Consensus        35 ~~~~~~kV~V~vyyESlCPd~~~Fi~~qL~P~~~~~~l~d~vdl~lvP~   83 (173)
                      ....+.|+.|.+|.-=.||+|++|- ..|.+..+     +.+.+.+++|
T Consensus        21 ~g~~~ak~tIv~FsD~~CpyC~~~~-~~l~~~~~-----~~~~~~~~~~   63 (156)
T d1eeja1          21 YKAPQEKHVITVFTDITCGYCHKLH-EQMADYNA-----LGITVRYLAF   63 (156)
T ss_dssp             ECCTTCCEEEEEEECTTCHHHHHHH-TTHHHHHH-----TTEEEEEEEC
T ss_pred             ecCCCCCEEEEEEeCCCCHHHHHHH-HHHHHhhc-----cCceEEEEec
Confidence            3466788899999999999999984 44555433     2355555544