Citrus Sinensis ID: 030678

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MVFDSFFSGRFNFFPQILCLLILLITVTPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQCGCGLNCYGENIRKIRTNLLVSSSY
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccccccccEEEEEEccccEEEEEEccEEEEEEccEEEEEEccEEEEEEEccccccccccEEEEEEEEEEEEEEEEcccEEEEEEEEcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccccccEEEEEcccccEEEEEEcccEEEEEcccEEEEEEcEEEEEEEcccEccccEEEEEEEEEEEEEEEEEEcccEEEEEEEEEEccccHHHccccccccccccccccccHHccccccEcccc
Coil and Loop (DISEMBL)
mvfdsffsgrfnffPQILCLLILLITvtpsfaeeptayevlksfnfpigilpkgvtgydlesstgkfsayfngscsfslegsyqlkyeptikgyitkgklsslegvSVKLFFMWVDIVEvsrhgdtldfsvgitgadfpvvnfeecpqcgcglncygeNIRKIRTNLLVSSSY
Flexible Loop (DISEMBL)
MVFDSFFSGRFNFFPQILCLLILLITVTPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQCGCGLNCYGENIRKIRTnllvsssy
Low Complexity Region (SEG)
MVfdsffsgrfnffPQilcllilliTVTPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQCGCGLNCYGENIRKIRTNLLVSSSY
Disordered region (IsUnstruct)
**FDSFFSGRFNFFPQILCLLILLITVTPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQCGCGLNCYGENIRKIRTNLLV****
Disordered Region (DISOPRED)
********GRFNFFPQILCLLILLITVTPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQCGCGLNCYGENIRKIRT*LLV****
Disordered Region (DISEMBL)
MVFDSFFSGRFNFFPQILCLLILLITVTPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQCGCGLNCYGENIRKIRTNLLVSSSY
Disordered Region (DISPRO)
******FSGRFNFFPQILCLLILLITVTPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQCGCGLNCYGENIRKIRT**LV****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVFDSFFSGRFNFFPQILCLLILLITVTPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQCGCGLNCYGENIRKIRTNLLVSSSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q9M015	170	Uncharacterized protein A	no	no	0.543	0.552	0.315	6e-10

>sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%)

Query: 39  EVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKG 98
           E+LK ++ PIGI P   T Y+ +  T K +      C    + S  LK+  T+ G++ KG
Sbjct: 56  ELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKG 115

Query: 99  KLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGI 133
           KL+ +EG+  K+  +WV +  +S     + F+ G+
Sbjct: 116 KLTDVEGIKTKV-MIWVKVTSISTDASKVYFTAGM 149

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
225450691	170	PREDICTED: uncharacterized protein LOC10	0.936	0.952	0.660	1e-56
255542778	173	conserved hypothetical protein [Ricinus	0.953	0.953	0.613	5e-54
224123822	173	predicted protein [Populus trichocarpa]	0.809	0.809	0.683	2e-52
225437416	162	PREDICTED: uncharacterized protein LOC10	0.907	0.969	0.594	3e-51
118485965	175	unknown [Populus trichocarpa]	0.809	0.8	0.676	3e-51
147795023	162	hypothetical protein VITISV_014708 [Viti	0.907	0.969	0.594	7e-51
224123072	123	predicted protein [Populus trichocarpa]	0.710	1.0	0.707	9e-48
296089725	269	unnamed protein product [Vitis vinifera]	0.855	0.550	0.590	1e-45
118484288	167	unknown [Populus trichocarpa]	0.757	0.784	0.651	2e-45
224128454	167	predicted protein [Populus trichocarpa]	0.791	0.820	0.637	3e-45

>gi|225450691|ref|XP_002283241.1| PREDICTED: uncharacterized protein LOC100263080 [Vitis vinifera] gi|296089728|emb|CBI39547.3| unnamed protein product [Vitis vinifera]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 107/162 (66%), Positives = 125/162 (77%)

Query: 10  RFNFFPQILCLLILLITVTPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSA 69
           R       LCL+++  T   S  + PT YEVL+ +NFP+G+LPKGV GYDL +STGKFSA
Sbjct: 8   RLISLAATLCLILIHSTPASSSNDSPTVYEVLQDYNFPVGLLPKGVIGYDLNTSTGKFSA 67

Query: 70  YFNGSCSFSLEGSYQLKYEPTIKGYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDF 129
            FNGSCSFSLEGSYQLKY+ TIKG I+KGKLSSLEGVSVKLFF+WVDI+EV R GD +DF
Sbjct: 68  SFNGSCSFSLEGSYQLKYKSTIKGNISKGKLSSLEGVSVKLFFIWVDIIEVRRSGDDIDF 127

Query: 130 SVGITGADFPVVNFEECPQCGCGLNCYGENIRKIRTNLLVSS 171
           SVGI  A F + NFEECPQCGCGLNC    + K+R+N  VSS
Sbjct: 128 SVGIASAGFSIDNFEECPQCGCGLNCGNRQVNKLRSNPFVSS 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542778|ref|XP_002512452.1| conserved hypothetical protein [Ricinus communis] gi|255591191|ref|XP_002535460.1| conserved hypothetical protein [Ricinus communis] gi|223523035|gb|EEF26923.1| conserved hypothetical protein [Ricinus communis] gi|223548413|gb|EEF49904.1| conserved hypothetical protein [Ricinus communis]

 Score =  215 bits (548), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 103/168 (61%), Positives = 133/168 (79%), Gaps = 3/168 (1%)

Query: 7   FSGRFNFFPQILCLLILLIT--VTPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESST 64
           ++  ++    ILC+++L  +  +  S  EEPTAYE+L  +NFP G+LPKGV GYDL++++
Sbjct: 5   YTNSYSSLSAILCIVLLFSSSWLAKSVNEEPTAYEILSDYNFPKGLLPKGVIGYDLDTTS 64

Query: 65  GKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKGKLSSLEGVSVKLFFMWVDIVEVSRHG 124
           GKFSA+ NG+CSFSLEGSYQL+Y+ TI+G+I+KGKLSSL+GVSVKL FMWVDIVEVSR G
Sbjct: 65  GKFSAFLNGTCSFSLEGSYQLRYKSTIRGHISKGKLSSLQGVSVKLLFMWVDIVEVSRSG 124

Query: 125 DTLDFSVGITGADFPVVNFEECPQCGCGLNCYGEN-IRKIRTNLLVSS 171
           D L+FSVGI GA FP+ NFEE PQCGCGL+C     + K+R+N  VSS
Sbjct: 125 DDLEFSVGIAGAGFPIDNFEESPQCGCGLDCGDRRKVSKMRSNPFVSS 172

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123822|ref|XP_002330217.1| predicted protein [Populus trichocarpa] gi|222871673|gb|EEF08804.1| predicted protein [Populus trichocarpa]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/142 (68%), Positives = 120/142 (84%), Gaps = 2/142 (1%)

Query: 33  EEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIK 92
           ++PTAYE+L  +NFP G+LPKGV GY L+++TG+FSA+ NGSCSFSLEGSYQL+Y+ ++ 
Sbjct: 32  QKPTAYEILGDYNFPKGLLPKGVVGYSLDTTTGRFSAFLNGSCSFSLEGSYQLRYKSSVN 91

Query: 93  GYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQCGCG 152
           GYI++G+LS LEGVSVK+FFMWVDIVEV R+GD L+FSVGI GA FP+ NFEECPQCGCG
Sbjct: 92  GYISQGRLSRLEGVSVKVFFMWVDIVEVLRNGDDLEFSVGIAGAGFPIDNFEECPQCGCG 151

Query: 153 LNCYG--ENIRKIRTNLLVSSS 172
           LNC G    + KIR+N  VSSS
Sbjct: 152 LNCSGAKRKVSKIRSNPFVSSS 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437416|ref|XP_002271045.1| PREDICTED: uncharacterized protein LOC100265898 [Vitis vinifera]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 94/158 (59%), Positives = 125/158 (79%), Gaps = 1/158 (0%)

Query: 15  PQILCL-LILLITVTPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNG 73
           P +L L +I L ++  +  + PTAYE+L+S+NFP+G+LPKG  GYDL+  TGKF+AYFNG
Sbjct: 4   PAVLVLCVIFLSSIVTADDDSPTAYEILQSYNFPMGLLPKGALGYDLDKDTGKFNAYFNG 63

Query: 74  SCSFSLEGSYQLKYEPTIKGYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGI 133
           SC FSLEGSYQLKY+ TI GYI++ KL+ L G+SVK+ F+W++IVEV+R+GD ++FSVGI
Sbjct: 64  SCGFSLEGSYQLKYKSTISGYISQNKLTKLSGISVKVLFLWLNIVEVTRNGDDMEFSVGI 123

Query: 134 TGADFPVVNFEECPQCGCGLNCYGENIRKIRTNLLVSS 171
             A FP+ NF ECPQCGCGL+C    +RK++TN  VSS
Sbjct: 124 ASAAFPIDNFFECPQCGCGLDCVNGQVRKLKTNPFVSS 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485965|gb|ABK94827.1| unknown [Populus trichocarpa]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 96/142 (67%), Positives = 119/142 (83%), Gaps = 2/142 (1%)

Query: 33  EEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIK 92
           + PTAY++L  +N P G+LPKGV GY L+++ GKFSA++NG+CSFSLEGSYQL+Y+ TI 
Sbjct: 34  QNPTAYDILGDYNLPKGLLPKGVVGYSLDTTAGKFSAFWNGTCSFSLEGSYQLRYKSTIN 93

Query: 93  GYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQCGCG 152
           GYI+KG+LS LEGVSVKLFF WVDI++V+R+GD L+FSVGI GADF V NFEECPQCGCG
Sbjct: 94  GYISKGRLSRLEGVSVKLFFFWVDIIDVTRNGDDLEFSVGIAGADFSVDNFEECPQCGCG 153

Query: 153 LNCYGE--NIRKIRTNLLVSSS 172
           LNC G+   + KIR+N  VSSS
Sbjct: 154 LNCGGKTRKVSKIRSNPFVSSS 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147795023|emb|CAN69598.1| hypothetical protein VITISV_014708 [Vitis vinifera]

 Score =  204 bits (520), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 94/158 (59%), Positives = 124/158 (78%), Gaps = 1/158 (0%)

Query: 15  PQILCL-LILLITVTPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNG 73
           P +L L +I L ++  +  + PTAYE+L+S+NFP+G+LPKG  GYDL+  TGKF+AYFNG
Sbjct: 4   PAVLVLCVIFLSSIVTADDDSPTAYEILQSYNFPMGLLPKGALGYDLDKDTGKFNAYFNG 63

Query: 74  SCSFSLEGSYQLKYEPTIKGYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGI 133
           SC FSLEGSYQLKY+ TI GYI++ KL+ L G SVK+ F+W++IVEV+R+GD ++FSVGI
Sbjct: 64  SCGFSLEGSYQLKYKSTISGYISQNKLTKLSGXSVKVLFLWLNIVEVTRNGDDMEFSVGI 123

Query: 134 TGADFPVVNFEECPQCGCGLNCYGENIRKIRTNLLVSS 171
             A FP+ NF ECPQCGCGL+C    +RK++TN  VSS
Sbjct: 124 ASAAFPIDNFFECPQCGCGLDCVNGQVRKLKTNPFVSS 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123072|ref|XP_002318987.1| predicted protein [Populus trichocarpa] gi|222857363|gb|EEE94910.1| predicted protein [Populus trichocarpa]

 Score =  194 bits (494), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 87/123 (70%), Positives = 107/123 (86%)

Query: 33  EEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIK 92
           + PTAY++L  +N P G+LPKGV GY L+++ GKFSA++NG+CSFSLEGSYQL+Y+ TI 
Sbjct: 1   QNPTAYDILGDYNLPKGLLPKGVVGYSLDTTAGKFSAFWNGTCSFSLEGSYQLRYKSTIN 60

Query: 93  GYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQCGCG 152
           GYI+KG+LS LEGVSVKLFF WVDI++V+R+GD L+FSVGI GADF V NFEECPQCGCG
Sbjct: 61  GYISKGRLSRLEGVSVKLFFFWVDIIDVTRNGDDLEFSVGIAGADFSVDNFEECPQCGCG 120

Query: 153 LNC 155
           LNC
Sbjct: 121 LNC 123

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089725|emb|CBI39544.3| unnamed protein product [Vitis vinifera]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/149 (59%), Positives = 112/149 (75%), Gaps = 1/149 (0%)

Query: 18  LCLLILLITVTPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSF 77
           LCL+++      S  E PTAYEVL+ +NFP+G+LP+GV GY+L S+TGKF AY N +CSF
Sbjct: 122 LCLILIHSPPVTSANENPTAYEVLQDYNFPVGLLPEGVLGYELNSTTGKFVAYLNDTCSF 181

Query: 78  SLEGSYQLKYEPTIKGYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGAD 137
           S EG+YQLKY  TIKG I+ GKL SLEGVSVK F +W++IVE+ R G+ +DFSVG+  A 
Sbjct: 182 S-EGAYQLKYLSTIKGNISNGKLDSLEGVSVKFFHVWMNIVEILRRGNDIDFSVGVGKAW 240

Query: 138 FPVVNFEECPQCGCGLNCYGENIRKIRTN 166
           FP+  FEE PQCGCG+NC    +RK+R N
Sbjct: 241 FPIEYFEESPQCGCGMNCGRRQVRKLRAN 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484288|gb|ABK94023.1| unknown [Populus trichocarpa]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/132 (65%), Positives = 103/132 (78%), Gaps = 1/132 (0%)

Query: 35  PTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGY 94
           PT Y+VL  +NFPIGILPKG TGYDL+ +TG+F AY NGSCSFSLEGSYQLKY+ T+ GY
Sbjct: 27  PTTYDVLSGYNFPIGILPKGATGYDLDKATGRFRAYLNGSCSFSLEGSYQLKYKSTVSGY 86

Query: 95  ITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQCGCGLN 154
           I++ +L+ L GVSVK+ F W+DIVEV R GD L+FSVGIT A F + NF ECPQCGCG N
Sbjct: 87  ISENRLTDLSGVSVKILFFWLDIVEVVRKGDELEFSVGITSASFAIDNFYECPQCGCGFN 146

Query: 155 CYG-ENIRKIRT 165
           C   E   K+R+
Sbjct: 147 CNNVERATKLRS 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128454|ref|XP_002320336.1| predicted protein [Populus trichocarpa] gi|222861109|gb|EEE98651.1| predicted protein [Populus trichocarpa]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 88/138 (63%), Positives = 106/138 (76%), Gaps = 1/138 (0%)

Query: 35  PTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGY 94
           PT YE++  +NFPIGILPKG TGY L+ +TG+F A+ NGSCSFS+EGSYQL Y+ TI GY
Sbjct: 29  PTVYEIIAGYNFPIGILPKGATGYKLDKTTGEFGAFLNGSCSFSVEGSYQLNYKSTISGY 88

Query: 95  ITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQCGCGLN 154
           I+  +L SL GVSVK+ F W++IVEV R+GD LDFSVGI  A FP+ NF ECPQCGCGLN
Sbjct: 89  ISDNRLKSLSGVSVKVLFFWLNIVEVIRNGDELDFSVGIASASFPIDNFYECPQCGCGLN 148

Query: 155 CYG-ENIRKIRTNLLVSS 171
           C   E   K+R+N  VSS
Sbjct: 149 CNNVELATKLRSNPFVSS 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
TAIR|locus:2133264	167	AT4G02370 "AT4G02370" [Arabido	0.843	0.874	0.561	4e-42
TAIR|locus:505006096	166	AT1G02816 "AT1G02816" [Arabido	0.786	0.819	0.583	4.6e-41
TAIR|locus:2133254	154	AT4G02360 "AT4G02360" [Arabido	0.734	0.824	0.564	2.1e-36
TAIR|locus:505006095	149	AT1G02813 [Arabidopsis thalian	0.751	0.872	0.465	1e-29
TAIR|locus:2183134	151	AT5G19590 "AT5G19590" [Arabido	0.699	0.801	0.370	1.4e-16
TAIR|locus:2147610	181	AT5G19860 "AT5G19860" [Arabido	0.641	0.613	0.333	7.9e-14
TAIR|locus:2166178	170	AT5G37070 "AT5G37070" [Arabido	0.543	0.552	0.336	1e-13
TAIR|locus:2079601	169	AT3G07470 [Arabidopsis thalian	0.699	0.715	0.304	2.7e-13
TAIR|locus:2079701	271	AT3G07460 "AT3G07460" [Arabido	0.699	0.446	0.296	6.5e-13
TAIR|locus:2097668	170	AT3G08890 "AT3G08890" [Arabido	0.543	0.552	0.294	1.9e-12

TAIR|locus:2133264 AT4G02370 "AT4G02370" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 82/146 (56%), Positives = 107/146 (73%)

Query:    27 VTPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLK 86
             VT + ++ PTAY +L+S+NFP+GILPKGV  YDL+++TGKF AYFN SCSF+L GSYQL 
Sbjct:    22 VTAAESDTPTAYSLLQSYNFPVGILPKGVVAYDLDTTTGKFHAYFNDSCSFNLVGSYQLN 81

Query:    87 YEPTIKGYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEEC 146
             Y+ TI GYI++ KL  L GV VK+ F+W++IVEV R+GD ++FSVGIT A+F +  F E 
Sbjct:    82 YKSTISGYISENKLKKLTGVKVKVLFLWLNIVEVIRNGDEMEFSVGITSANFAIQEFLES 141

Query:   147 PQCGCGLNCYGENIRKIRTNLLVSSS 172
             PQCGCG  C    +  I     +SSS
Sbjct:   142 PQCGCGFECKDSKLDMIERIPFLSSS 167

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:505006096 AT1G02816 "AT1G02816" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 80/137 (58%), Positives = 105/137 (76%)

Query:    35 PTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGY 94
             PTAY +L+S+NFP+GILPKGV  YDL+ STG+F AYFN SCSF+L+GSYQL Y+ TI GY
Sbjct:    30 PTAYTLLQSYNFPVGILPKGVVSYDLDKSTGQFHAYFNKSCSFALQGSYQLDYKSTISGY 89

Query:    95 ITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQCGCGLN 154
             I++ K++ L GV VK+ F+W++IVEV R+GD L+FSVGIT A+F +  F E PQCGCG +
Sbjct:    90 ISENKITKLTGVKVKVLFLWLNIVEVIRNGDELEFSVGITSANFEIDEFYESPQCGCGFD 149

Query:   155 CYGENIRKIRTNLLVSS 171
             C  +  + +  N  VSS
Sbjct:   150 CKTKT-KTLGRNPFVSS 165

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2133254 AT4G02360 "AT4G02360" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 74/131 (56%), Positives = 92/131 (70%)

Query:    28 TPSFA---EEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQ 84
             T SFA   ++PTAY+ +K +N P GILPKGV  Y+L   TG F  YFN +C F+++ SYQ
Sbjct:    17 TVSFAVSGQKPTAYDAVKLYNLPPGILPKGVVDYELNPKTGNFKVYFNDTCEFTIQ-SYQ 75

Query:    85 LKYEPTIKGYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFE 144
             LKY+ TI G I+ G + +L+GVSVK+ F WV+I EVS  G  LDFSVGI  A FP  NFE
Sbjct:    76 LKYKSTISGVISPGHVKNLKGVSVKVLFFWVNIAEVSLDGADLDFSVGIASASFPAANFE 135

Query:   145 ECPQCGCGLNC 155
             E PQCGCG +C
Sbjct:   136 ESPQCGCGFDC 146

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006095 AT1G02813 [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 61/131 (46%), Positives = 88/131 (67%)

Query:    26 TVTPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQL 85
             +V+ S  ++ + Y+VL+++  P GILP+GV  YDL   TG F   FN +C FS++ SY++
Sbjct:    14 SVSVSGQKKRSVYQVLENYTLPRGILPEGVHDYDLNRRTGVFKVRFNTTCQFSID-SYKV 72

Query:    86 KYEPTIKGYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEE 145
             KY+P I G IT+G++  L GVSVK+ F W++I EVSR GD ++F VG    +F    F +
Sbjct:    73 KYKPVISGIITRGRVIRLIGVSVKVLFFWINISEVSRDGDDVEFFVGAASEEFSSKYFVD 132

Query:   146 CPQCGCGLNCY 156
              P+CGCG NCY
Sbjct:   133 SPKCGCGFNCY 143

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2183134 AT5G19590 "AT5G19590" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 46/124 (37%), Positives = 67/124 (54%)

Query:    28 TPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLE-GSYQLK 86
             TP   +   A+  L +  FPIG+LP  V  Y L  ++G FS + NG+C  +L   +Y   
Sbjct:    22 TPEVKKPTRAHAELTNHGFPIGLLPLSVKDYFLNQTSGDFSLFLNGACKITLPPDNYIAT 81

Query:    87 YEPTIKGYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSV-GITGADFPVVNFEE 145
             Y   + G I++GK++ L+G+ V+ FF    I  +   GD L F V GIT A +P  NF+E
Sbjct:    82 YSNKVTGRISQGKIAELQGIRVRAFFKSWSITGIRSSGDNLVFEVAGIT-AKYPSKNFDE 140

Query:   146 CPQC 149
                C
Sbjct:   141 SLDC 144

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2147610 AT5G19860 "AT5G19860" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 39/117 (33%), Positives = 60/117 (51%)

Query:    36 TAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYI 95
             T YE+L  +  P G+LP  VT + L S  G+F  +   SC   +E  Y + Y+ TI G I
Sbjct:    35 TVYELLPKYGLPSGLLPDTVTDFTL-SDDGRFVVHLPNSCE--IEFDYLVHYDKTISGRI 91

Query:    96 TKGKLSSLEGVSVKLFFMWVDIVEVSRH---GDTLDFSVGITGADFPVVNFEECPQC 149
               G ++ L+G+ VK FF+W+D+ E+       D++ F VG       +  F+    C
Sbjct:    92 GYGSITELKGIQVKKFFIWLDVDEIKVDLPPSDSIYFKVGFINKKLDIDQFKTIHSC 148

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2166178 AT5G37070 "AT5G37070" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/95 (33%), Positives = 52/95 (54%)

Query:    39 EVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKG 98
             E+LK F  P+GI P+  T Y+    TGK + +   +C      S  L++  T+ GY+ KG
Sbjct:    56 ELLKEFGLPVGIFPQDATNYEFNEETGKLTVFIPETCEVGYRDSSVLRFSTTVTGYLEKG 115

Query:    99 KLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGI 133
             KL+ +EG+  K+  +WV +  +S     + F+ GI
Sbjct:   116 KLAEVEGMKTKVM-IWVKVTCISADSSKVYFTAGI 149

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2079601 AT3G07470 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 39/128 (30%), Positives = 64/128 (50%)

Query:    26 TVTPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQL 85
             +++ + +E  T YE+L +   P GI PKGV  +  +  TG+FS Y N +C    E   ++
Sbjct:    20 SISTAISETETIYEILLANGLPSGIFPKGVREFTFDVETGRFSVYLNQACEAKYET--EI 77

Query:    86 KYEPTIKGYITKGKLSSLEGVSVKLFFMWVDI----VEVSRHGDTLDFSVGITGADFPVV 141
              Y+  I G I   ++S L G+S +  F+W  +    V+V   G  + F VG+    + + 
Sbjct:    78 HYDANITGTIGSAQISDLSGISAQELFLWFPVKGIRVDVPSSG-LIYFDVGVVRKQYSLS 136

Query:   142 NFEECPQC 149
              FE    C
Sbjct:   137 LFETPRDC 144

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2079701 AT3G07460 "AT3G07460" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 6.5e-13, P = 6.5e-13
 Identities = 38/128 (29%), Positives = 64/128 (50%)

Query:    26 TVTPSFAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQL 85
             +++   AE  +  E+L +   P+G+ PKGV G+ +   TG+FS Y N SC    E   +L
Sbjct:    19 SISAVIAENESIDEILLANGLPLGLFPKGVKGFTVNGETGRFSVYLNQSCQAKYET--EL 76

Query:    86 KYEPTIKGYITKGKLSSLEGVSVKLFFMWVDI----VEVSRHGDTLDFSVGITGADFPVV 141
              Y+  + G I   ++  L G+S +  F+W+ +    V+V   G  + F VG+    + + 
Sbjct:    77 HYDEIVSGTIGYAQIRDLSGISAQELFLWLQVKGIRVDVPSSG-LIFFDVGVLRKQYSLS 135

Query:   142 NFEECPQC 149
              FE    C
Sbjct:   136 LFETPRDC 143

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2097668 AT3G08890 "AT3G08890" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 28/95 (29%), Positives = 51/95 (53%)

Query:    39 EVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKG 98
             E+LK F  P+GI P+  T Y+    T K + +    C    + +  L++  T+ G++ KG
Sbjct:    56 ELLKEFGLPVGIFPRDATNYEFNEQTRKLTVFIPSICEVGYKDTSVLRFTTTVTGFLEKG 115

Query:    99 KLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGI 133
             KL+ +EG+  K+  +WV +  +S     + F+ G+
Sbjct:   116 KLADVEGMKTKVM-IWVKVTSISADSSKVHFTAGM 149

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022675001 SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (170 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	173
pfam04398	108	pfam04398, DUF538, Protein of unknown function, DU	1e-46

>gnl|CDD|218064 pfam04398, DUF538, Protein of unknown function, DUF538

 Score =  147 bits (374), Expect = 1e-46
 Identities = 60/109 (55%), Positives = 79/109 (72%), Gaps = 2/109 (1%)

Query: 36  TAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYI 95
           TAYE+L+ +  P+G+LPKGVT Y L+ +TGKF  Y NG+C F+ EG Y ++Y+PT+ GYI
Sbjct: 1   TAYELLEEYGLPVGLLPKGVTEYTLDETTGKFWVYLNGTCEFTFEG-YSVRYDPTVTGYI 59

Query: 96  TKGKLSSLEGVSVKLFFMWVDIVEVSRH-GDTLDFSVGITGADFPVVNF 143
           +KG+LS LEGV VK+ F+WV IVE+S   GD L FSVG+    FP   F
Sbjct: 60  SKGRLSGLEGVKVKVLFLWVPIVEISVDDGDKLTFSVGVLSKSFPADAF 108

This family consists of several plant proteins of unknown function. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
PF04398	110	DUF538: Protein of unknown function, DUF538; Inter	100.0

>PF04398 DUF538: Protein of unknown function, DUF538; InterPro: IPR007493 This family consists of several plant proteins of unknown function

Probab=100.00  E-value=4.9e-46  Score=283.44  Aligned_cols=110  Identities=46%  Similarity=0.883  Sum_probs=84.4

Q ss_pred             cHHHHHhhcCCCCCCCCCCceeeEeecCCCeEEEEeccceEEEEccceEEEEccEEEEEeecCcccCCcceEEEEEEEEe
Q 030678           36 TAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKGKLSSLEGVSVKLFFMWV  115 (173)
Q Consensus        36 tayelL~~~GlP~GLLP~~V~~Y~l~~~tG~f~V~L~~~C~f~~~~~~~v~Y~~~ItG~i~~g~I~~L~GVkvK~lf~Wv  115 (173)
                      ||||+|++||||+||||++|++|+||++||+|+|+|+++|++++++ |+|+|+++|||+|++|+|++|+|||+|++|+|+
T Consensus         1 tayelL~~~glP~GLLP~~v~~y~l~~~tG~f~v~l~~~C~~~~~~-~~v~Y~~~ItG~i~~g~i~~L~GVk~k~l~~W~   79 (110)
T PF04398_consen    1 TAYELLEEYGLPRGLLPLGVTEYGLNRDTGFFWVKLKSPCEFRFEG-YLVSYDSEITGYIEKGKIKNLTGVKVKELFLWV   79 (110)
T ss_dssp             --HHHHHHHS-TT-TTTSSS-EEEE-TTT-SEEEE-SS-EEEESTT-SEEEE-SEEEEEE-SS-EEEEES-EEE-SSSEE
T ss_pred             CHHHhHHHcCCCCCcCCCCceEEEEecCCcEEEEEecCCEEEEEEE-EEEEEcCeEEEEECCCcCccccCEEEEEEEEEe
Confidence            7999999999999999999999999999999999999999999875 999999999999999999999999999999999


Q ss_pred             eeEEEEEeCCEEEEEEceeeeeeecCCccCC
Q 030678          116 DIVEVSRHGDTLDFSVGITGADFPVVNFEEC  146 (173)
Q Consensus       116 ~V~eI~~dg~~I~F~vG~~sksFP~s~F~~~  146 (173)
                      +|+||.+++++|+|++|+++++||+++|++|
T Consensus        80 ~v~~i~~~~~~i~F~~g~~s~sfp~~~F~~s  110 (110)
T PF04398_consen   80 PVTEISVDGDKIYFKVGGISKSFPVSAFEES  110 (110)
T ss_dssp             S---BEE-SSSEE-TTSSSS----TTTTSS-
T ss_pred             eEEEEEEcCCEEEEEEeeEeccCCHHHhccC
Confidence            9999999999999999999999999999986

; PDB: 1YDU_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	173
1ydu_A	170	Solution Nmr Structure Of At5g01610, An Arabidopsis		5e-11

>pdb|1YDU|A Chain A, Solution Nmr Structure Of At5g01610, An Arabidopsis Thaliana Protein Containing Duf538 Domain Length = 170

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 39  EVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKG 98
           E+LK ++ PIGI P   T Y+ +  T K +      C    + S  LK+  T+ G++ KG
Sbjct: 56  ELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKG 115
Query: 99  KLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGI 133
           KL+ +EG+  K+  +WV +  +S     + F+ G+
Sbjct: 116 KLTDVEGIKTKV-MIWVKVTSISTDASKVYFTAGM 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
1ydu_A	170	AT5G01610; DUF538, structural genomics, protein st	6e-46

>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1 Length = 170

 Score =  147 bits (372), Expect = 6e-46
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 33  EEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIK 92
            +    E+LK ++ PIGI P   T Y+ +  T K +      C    + S  LK+  T+ 
Sbjct: 50  MQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVT 109

Query: 93  GYITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQCGCG 152
           G++ KGKL+ +EG+  K+   WV +  +S     + F+ G+  +      +    + G  
Sbjct: 110 GHLEKGKLTDVEGIKTKVMI-WVKVTSISTDASKVYFTAGMKKS-RSRDAY-GVQRNGLR 166

Query: 153 L 153
           +
Sbjct: 167 V 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
1ydu_A	170	AT5G01610; DUF538, structural genomics, protein st	100.0

>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1

Probab=100.00  E-value=2.6e-44  Score=290.85  Aligned_cols=120  Identities=25%  Similarity=0.479  Sum_probs=115.4

Q ss_pred             CCCCCcHHHHHhhcCCCCCCCCCCceeeEeecCCCeEEEEeccceEEEEccceEEEEccEEEEEeecCcccCCcceEEEE
Q 030678           31 FAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKGKLSSLEGVSVKL  110 (173)
Q Consensus        31 ~~~~~tayelL~~~GlP~GLLP~~V~~Y~l~~~tG~f~V~L~~~C~f~~~~~~~v~Y~~~ItG~i~~g~I~~L~GVkvK~  110 (173)
                      +++.++|||+|++||||+||||++|++|+||++||+|+|+|+++|+++++++|+|+|+++|||+|++|+|++|+||++|+
T Consensus        48 g~~~~ta~elL~e~gLP~GLLP~~V~~Y~l~~~tG~f~V~l~~~C~~~f~~~~~v~Y~~~VtG~l~~GkI~~L~GVk~K~  127 (170)
T 1ydu_A           48 GKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTKV  127 (170)
T ss_dssp             TTTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEES
T ss_pred             ccccccHHHHHHHcCCCCCcCCCCCeEEEEECCCcEEEEEeCCCEEEEecCccEEEEcCEEEEEEcCCcCccccCEEEEE
Confidence            47788999999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             EEEEeeeEEEEEeCCEEEEEEceeeeeeecCCccCCCCCCCC
Q 030678          111 FFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQCGCG  152 (173)
Q Consensus       111 lf~Wv~V~eI~~dg~~I~F~vG~~sksFP~s~F~~~P~C~~g  152 (173)
                      | +|++|+||.+++|+|+|++|+ +++||+++|+.+|+|...
T Consensus       128 L-lWv~V~eI~v~~~kI~F~vGi-~ksfp~saFe~~~~c~~~  167 (170)
T 1ydu_A          128 M-IWVKVTSISTDASKVYFTAGM-KKSRSRDAYGVQRNGLRV  167 (170)
T ss_dssp             S-SEESCCCBEECSSSEECTTSS-SSCCCHHHHSSCCCCCCT
T ss_pred             E-EEeeEEEEEEeCCEEEEEEcC-cccccHHHhcCCcCCccc
Confidence            9 999999999999999999995 799999999999999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	173
d1ydua1	169	b.162.1.1 (A:2-170) Hypothetical protein At5g01610	3e-45

>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 169

class: All beta proteins
fold: At5g01610-like
superfamily: At5g01610-like
family: At5g01610-like
domain: Hypothetical protein At5g01610
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  144 bits (365), Expect = 3e-45
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 34  EPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKG 93
           +    E+LK ++ PIGI P   T Y+ +  T K +      C    + S  LK+  T+ G
Sbjct: 50  QKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTG 109

Query: 94  YITKGKLSSLEGVSVKLFFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQCGCGL 153
           ++ KGKL+ +EG+  K+   WV +  +S     + F+ G+  +      +    + G  +
Sbjct: 110 HLEKGKLTDVEGIKTKVMI-WVKVTSISTDASKVYFTAGMKKS-RSRDAY-GVQRNGLRV 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d1ydua1	169	Hypothetical protein At5g01610 {Thale cress (Arabi	100.0

>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: At5g01610-like
superfamily: At5g01610-like
family: At5g01610-like
domain: Hypothetical protein At5g01610
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4.8e-44  Score=286.87  Aligned_cols=121  Identities=26%  Similarity=0.522  Sum_probs=112.7

Q ss_pred             CCCCCcHHHHHhhcCCCCCCCCCCceeeEeecCCCeEEEEeccceEEEEccceEEEEccEEEEEeecCcccCCcceEEEE
Q 030678           31 FAEEPTAYEVLKSFNFPIGILPKGVTGYDLESSTGKFSAYFNGSCSFSLEGSYQLKYEPTIKGYITKGKLSSLEGVSVKL  110 (173)
Q Consensus        31 ~~~~~tayelL~~~GlP~GLLP~~V~~Y~l~~~tG~f~V~L~~~C~f~~~~~~~v~Y~~~ItG~i~~g~I~~L~GVkvK~  110 (173)
                      ..+.++.+|||++||||+||||++|++|+||++||+|+|+|+++|+++++++|+|+|+++|||+|++|+|++|+|||+| 
T Consensus        47 gk~~k~l~ELL~eygLP~GLLP~~V~~Y~l~~~TG~f~V~l~~~C~~~f~~sy~v~Y~~~VtG~ls~Gki~~L~GVkvK-  125 (169)
T d1ydua1          47 GKMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTK-  125 (169)
T ss_dssp             TTTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEE-
T ss_pred             CCCCCCHHHHHHhcCCCCccCCCCceEEEEECCCcEEEEEeCCCEEEEecCceEEEEcCEEEEEEcCCcCccccceEEE-
Confidence            4567889999999999999999999999999999999999999999999889999999999999999999999999999 


Q ss_pred             EEEEeeeEEEEEeCCEEEEEEceeeeeeecCCccCCCCCCCCcc
Q 030678          111 FFMWVDIVEVSRHGDTLDFSVGITGADFPVVNFEECPQCGCGLN  154 (173)
Q Consensus       111 lf~Wv~V~eI~~dg~~I~F~vG~~sksFP~s~F~~~P~C~~g~~  154 (173)
                      +|+|++|+||.+|+++|+|++| ++++||+++|+. |+|+++.+
T Consensus       126 lflWv~V~eI~vd~~kI~F~vG-I~KsfP~daFE~-prdg~~vd  167 (169)
T d1ydua1         126 VMIWVKVTSISTDASKVYFTAG-MKKSRSRDAYGV-QRNGLRVD  167 (169)
T ss_dssp             SSSEESCCCBEECSSSEECTTS-SSSCCCHHHHSS-CCCCCCTT
T ss_pred             EEEEEEEEEEEEcCCeEEEEec-ccccCCHHHccC-Cccceeec
Confidence            7899999999999999999999 689999999955 66665543