Citrus Sinensis ID: 030681

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MASPHSISLCLLFLTLLSQTDLTFSLTITQKPFNHSRTSHPLQSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQCKSKVSQRSSISSI
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHccccccccccccEEEEEEccccEEEEEEccEEEEEEcEEEEEEcEEEEEEccccEEcccccEEEEEEEEEEEEEEEEEccccEEEEEEcEEEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHEEEEEEEHHHEcHHHHHHHHcccHHHcccccccccccccccHHHHHHHccccccccccccEEEEEcccccEEEEEEcccEEEEEEEEEEEccEEEEEEEcccEEcEcEEEEEEEEEEEEEcEEEEcccccEEEEEEEEEEccccHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MASPHSISLCLLFLTLLSQTDLTFSLtitqkpfnhsrtshplqsiidvhdllplyglpkglipsdiksytldkstgsfsiEMTRTCYVHFQQLVWydkhikgklsygavhdvsgiqAKKLFLWlpvtgietvknsdVLRFFVGAlsedlpaeqfqeipqckskvsqrssissi
Flexible Loop (DISEMBL)
MASPHSISLCLLFLTLLSQTDLTFSLTITQKPFNHSRTSHPLQSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLpaeqfqeipqckskvsqrssissi
Low Complexity Region (SEG)
MASPHsislcllfltllsqtdltfsltITQKPFNHSRTSHPLQSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQCkskvsqrssissi
Disordered region (IsUnstruct)
******ISLCLLFLTLLSQTDLTFSLTITQKPFNHSRTSHPLQSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSE**************************
Disordered Region (DISOPRED)
******I*LCLLFLTLLSQTDLTFSLTITQ******************HDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEI****************
Disordered Region (DISEMBL)
MASPHSISLCLLFLTLLSQTDLTFSLTITQKPFNHSRTSHPLQSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEI****************
Disordered Region (DISPRO)
**SPHSISLCLLFLTLLSQTDLTFSLTITQKPFNHSRTSHPLQSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQCKSK**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASPHSISLCLLFLTLLSQTDLTFSLTITQKPFNHSRTSHPLQSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQCKSKVSQRSSISSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q9M015	170	Uncharacterized protein A	no	no	0.468	0.476	0.309	5e-05

>sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 50  DLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQ--LVWYDKHIKGKLSYG 107
           +LL  Y LP G+ P D  +Y  D+ T   ++ +   C V ++   ++ +   + G L  G
Sbjct: 56  ELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKG 115

Query: 108 AVHDVSGIQAKKLFLWLPVTGIET 131
            + DV GI+  K+ +W+ VT I T
Sbjct: 116 KLTDVEGIKT-KVMIWVKVTSIST 138

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
255580088	163	conserved hypothetical protein [Ricinus	0.913	0.969	0.616	1e-48
224057092	160	predicted protein [Populus trichocarpa]	0.687	0.743	0.625	8e-40
224076006	158	predicted protein [Populus trichocarpa]	0.734	0.803	0.581	1e-39
224057079	113	predicted protein [Populus trichocarpa]	0.647	0.991	0.646	5e-38
225435704	210	PREDICTED: uncharacterized protein LOC10	0.664	0.547	0.593	1e-33
357518825	161	hypothetical protein MTR_8g085590 [Medic	0.705	0.757	0.564	2e-33
147841214	152	hypothetical protein VITISV_013832 [Viti	0.664	0.756	0.593	2e-33
449442610	164	PREDICTED: uncharacterized protein LOC10	0.774	0.817	0.514	3e-32
359806513	158	uncharacterized protein LOC100797883 pre	0.687	0.753	0.55	4e-32
147841215	147	hypothetical protein VITISV_013833 [Viti	0.664	0.782	0.567	4e-32

>gi|255580088|ref|XP_002530877.1| conserved hypothetical protein [Ricinus communis] gi|223529566|gb|EEF31517.1| conserved hypothetical protein [Ricinus communis]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 103/167 (61%), Positives = 125/167 (74%), Gaps = 9/167 (5%)

Query: 7   ISLCLLFLTLLSQTDLTFSLTITQKPFNHSRTSHPLQSIIDVHDLLPLYGLPKGLIPSDI 66
           ISL LL L  LS+T LTFSL    +PF         QS IDVHDLLPLYGLP+GL+P ++
Sbjct: 6   ISLYLLSLIFLSKTHLTFSLD-PHRPFLA-------QSTIDVHDLLPLYGLPRGLLPENV 57

Query: 67  KSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKGKLSYGAVHDVSGIQAKKLFLWLPV 126
           KSYTL   TGSF+I++   CYVHF +LV+YDK IKGKLSYGAV+DVSGIQAKKLFLW+ V
Sbjct: 58  KSYTLS-PTGSFTIQLKTPCYVHFDRLVYYDKEIKGKLSYGAVNDVSGIQAKKLFLWVSV 116

Query: 127 TGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQCKSKVSQRSSISSI 173
           + IE  K+  ++ FFVG LSE LPA QF +IP CKSKV+ R+++ SI
Sbjct: 117 SAIEVSKDDGMIEFFVGPLSEKLPAAQFNDIPACKSKVALRTNLESI 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057092|ref|XP_002299125.1| predicted protein [Populus trichocarpa] gi|222846383|gb|EEE83930.1| predicted protein [Populus trichocarpa]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 75/120 (62%), Positives = 97/120 (80%), Gaps = 1/120 (0%)

Query: 47  DVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKGKLSY 106
           D+HDLLP YGLP+GL+P +++S+TL  S GSF +++   CYVHF  +V+YDK IKGKLSY
Sbjct: 32  DIHDLLPQYGLPRGLLPDNVESFTLPSSDGSFEVKLKTPCYVHFDDVVYYDKVIKGKLSY 91

Query: 107 GAVHDVSGIQAKKLFLWLPVTGIETVKNSD-VLRFFVGALSEDLPAEQFQEIPQCKSKVS 165
           G+VHDVSGIQAKKLF+WLPVTGIE  K  D ++ FFVG +S +LPA+QF+++P CK KV 
Sbjct: 92  GSVHDVSGIQAKKLFVWLPVTGIEVSKADDSMISFFVGPISRELPAKQFEDVPACKRKVG 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076006|ref|XP_002304869.1| predicted protein [Populus trichocarpa] gi|222842301|gb|EEE79848.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/129 (58%), Positives = 104/129 (80%), Gaps = 2/129 (1%)

Query: 47  DVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKGKLSY 106
           D+H+LLP YGLP+GL+P +++SYTL  S G+F +++   CYVHF ++V+Y K IKG+LSY
Sbjct: 30  DIHELLPQYGLPRGLLPDNVESYTLSPSDGTFEVKLKNPCYVHFDEVVYYGKEIKGRLSY 89

Query: 107 GAVHDVSGIQAKKLFLWLPVTGIETVK-NSDVLRFFVGALSEDLPAEQFQEIPQCKSKVS 165
           G+VHDVSGIQAKKLF+WL VTGIE  K +S +++FFVG++SE+LPA+QF+ +P CK KV 
Sbjct: 90  GSVHDVSGIQAKKLFVWLSVTGIEVSKVDSGMIKFFVGSISEELPAKQFEVVPACKRKVG 149

Query: 166 Q-RSSISSI 173
             R+ + SI
Sbjct: 150 GLRAELESI 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057079|ref|XP_002299123.1| predicted protein [Populus trichocarpa] gi|224057085|ref|XP_002299124.1| predicted protein [Populus trichocarpa] gi|222846381|gb|EEE83928.1| predicted protein [Populus trichocarpa] gi|222846382|gb|EEE83929.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (409), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 73/113 (64%), Positives = 93/113 (82%), Gaps = 1/113 (0%)

Query: 49  HDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKGKLSYGA 108
           HDLLP YGLP+GL+P +++SYTL  S GSF +++   CYVHF  +V+YDK IKGKLSYG+
Sbjct: 1   HDLLPQYGLPRGLLPDNVESYTLPSSDGSFEVKLKTPCYVHFDDVVYYDKVIKGKLSYGS 60

Query: 109 VHDVSGIQAKKLFLWLPVTGIETVKNSD-VLRFFVGALSEDLPAEQFQEIPQC 160
           VHDVSGIQAKKLF+WLPVTGIE  K  D ++ FFVG +SE+LPA+QF+++P C
Sbjct: 61  VHDVSGIQAKKLFIWLPVTGIEVSKADDGMISFFVGPISEELPAKQFEDVPAC 113

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435704|ref|XP_002283472.1| PREDICTED: uncharacterized protein LOC100265618 [Vitis vinifera]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/118 (59%), Positives = 86/118 (72%), Gaps = 3/118 (2%)

Query: 47  DVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKGKLSY 106
           DVHDLLP +G P+GLIPS +K Y+L +  G F + M   CYV F  LV+YDK IKG LSY
Sbjct: 91  DVHDLLPHFGFPRGLIPSSVKEYSLSED-GEFEVHMDHPCYVQFDDLVYYDKKIKGHLSY 149

Query: 107 GAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQCKSKV 164
           G+V DV+GIQAKK FLW+PVTGI+    S  ++F VGALSE LPAEQF+ +  CK+K 
Sbjct: 150 GSVSDVTGIQAKKFFLWVPVTGIDAA--SGYIQFHVGALSETLPAEQFENVRVCKAKA 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518825|ref|XP_003629701.1| hypothetical protein MTR_8g085590 [Medicago truncatula] gi|355523723|gb|AET04177.1| hypothetical protein MTR_8g085590 [Medicago truncatula]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/124 (56%), Positives = 91/124 (73%), Gaps = 2/124 (1%)

Query: 47  DVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQ-QLVWYDKHIKGKLS 105
           D+HDLLP YG PKG++P++I SYTL  S G F++ +   CYV F  QLV+YD  + G L+
Sbjct: 30  DIHDLLPDYGFPKGILPNNIASYTLSPS-GYFTLHLQSPCYVRFSGQLVYYDTLVTGTLT 88

Query: 106 YGAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQCKSKVS 165
           YG+V  VSGIQAK LF+WLPVTG+E    S +L+FFVGALS+ LPA QFQ++P C SK  
Sbjct: 89  YGSVSGVSGIQAKMLFIWLPVTGMEVDSPSGMLQFFVGALSKKLPANQFQDVPGCSSKAC 148

Query: 166 QRSS 169
           + S+
Sbjct: 149 KDSA 152

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841214|emb|CAN64354.1| hypothetical protein VITISV_013832 [Vitis vinifera]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/118 (59%), Positives = 86/118 (72%), Gaps = 3/118 (2%)

Query: 47  DVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKGKLSY 106
           DVHDLLP +G P+GLIPS +K Y+L +  G F + M   CYV F  LV+YDK IKG LSY
Sbjct: 33  DVHDLLPHFGFPRGLIPSSVKEYSLSED-GEFEVHMDHPCYVQFDDLVYYDKKIKGHLSY 91

Query: 107 GAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQCKSKV 164
           G+V DV+GIQAKK FLW+PVTGI+    S  ++F VGALSE LPAEQF+ +  CK+K 
Sbjct: 92  GSVSDVTGIQAKKFFLWVPVTGIDAA--SGYIQFHVGALSETLPAEQFENVRVCKAKA 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442610|ref|XP_004139074.1| PREDICTED: uncharacterized protein LOC101202755 [Cucumis sativus]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/136 (51%), Positives = 91/136 (66%), Gaps = 2/136 (1%)

Query: 29  TQKPFNHSRTSHPLQSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYV 88
           TQ   + S    PL+S  D+HDLLPLYG P GL+P ++ SYTL    G+F I++  +CYV
Sbjct: 22  TQTHLSFSARDFPLRSS-DIHDLLPLYGFPVGLLPDNVNSYTLSDD-GTFEIQLQSSCYV 79

Query: 89  HFQQLVWYDKHIKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSED 148
           HF  LV+Y K+IKGKLS  ++ DVSGI+ KKLF WLP+TGI+   +S  + F VG LSE 
Sbjct: 80  HFSDLVYYGKNIKGKLSNRSLSDVSGIEVKKLFAWLPITGIKVTPDSKSIEFAVGFLSEI 139

Query: 149 LPAEQFQEIPQCKSKV 164
           LP   F+ IP C+ K 
Sbjct: 140 LPVSMFESIPTCRRKA 155

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806513|ref|NP_001241257.1| uncharacterized protein LOC100797883 precursor [Glycine max] gi|255645851|gb|ACU23416.1| unknown [Glycine max]

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 88/120 (73%), Gaps = 1/120 (0%)

Query: 47  DVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQ-QLVWYDKHIKGKLS 105
           D+HD+LP YG PKGL+P++  SYTL    G F++++   CYVH+  QLV+Y   I G L+
Sbjct: 29  DIHDVLPQYGFPKGLLPNNAVSYTLSPDDGFFTVQLDAPCYVHWDDQLVYYHSQISGTLT 88

Query: 106 YGAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQCKSKVS 165
           YG+V  VSGIQA+KLFLWLPVTGI+  ++S +L FFVGALS+ LPA  FQ++P C  + S
Sbjct: 89  YGSVSHVSGIQAQKLFLWLPVTGIKVHQDSGMLEFFVGALSQTLPASDFQDVPGCSRRGS 148

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841215|emb|CAN64355.1| hypothetical protein VITISV_013833 [Vitis vinifera]

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/118 (56%), Positives = 87/118 (73%), Gaps = 3/118 (2%)

Query: 47  DVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKGKLSY 106
           D HDLLP YG PKGLIPS +K Y++ +S G F I M  +CYV F +LV+YDK I+G++ Y
Sbjct: 26  DFHDLLPPYGFPKGLIPSTVKFYSISES-GEFDIHMHHSCYVQFNRLVFYDKKIRGRIEY 84

Query: 107 GAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQCKSKV 164
           G+V +V+GIQ KKLF W+PVTGI++      LRF +G LSE LPA+QF+ +P CK KV
Sbjct: 85  GSVTNVTGIQTKKLFFWVPVTGIDSALG--FLRFHIGPLSEKLPAKQFEMVPICKHKV 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
TAIR|locus:505006187	175	AT1G55265 [Arabidopsis thalian	0.734	0.725	0.488	1.4e-30
TAIR|locus:2147610	181	AT5G19860 "AT5G19860" [Arabido	0.722	0.690	0.393	3e-21
TAIR|locus:505006197	156	AT1G61667 "AT1G61667" [Arabido	0.653	0.724	0.350	4.6e-18
TAIR|locus:2079701	271	AT3G07460 "AT3G07460" [Arabido	0.653	0.416	0.342	2.9e-16
TAIR|locus:2172094	161	AT5G54530 "AT5G54530" [Arabido	0.647	0.695	0.368	3.7e-16
TAIR|locus:2079601	169	AT3G07470 [Arabidopsis thalian	0.653	0.668	0.324	4.7e-16
TAIR|locus:505006096	166	AT1G02816 "AT1G02816" [Arabido	0.630	0.656	0.373	1.3e-15
TAIR|locus:2133254	154	AT4G02360 "AT4G02360" [Arabido	0.635	0.714	0.345	3e-14
TAIR|locus:505006095	149	AT1G02813 [Arabidopsis thalian	0.641	0.744	0.324	6.2e-14
TAIR|locus:2133264	167	AT4G02370 "AT4G02370" [Arabido	0.630	0.652	0.339	2.1e-13

TAIR|locus:505006187 AT1G55265 [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 63/129 (48%), Positives = 89/129 (68%)

Query:    33 FNHSRTSHPLQSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQ- 91
             F+      P  +  D+HDLLP YG PKGL+P+++KSYT+    G F++++  +CYV F  
Sbjct:    39 FSSLNLDRPSLAADDIHDLLPRYGFPKGLLPNNVKSYTISDD-GDFTVDLISSCYVKFSD 97

Query:    92 QLVWYDKHIKGKLSYGAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPA 151
             QLV+Y K+I GKLSYG+V DV GIQAK+ FLWLP+T +E+  +S  + F VG +S+ LPA
Sbjct:    98 QLVFYGKNIAGKLSYGSVKDVRGIQAKEAFLWLPITAMESDPSSATVVFSVGFVSKTLPA 157

Query:   152 EQFQEIPQC 160
               F+ +P C
Sbjct:   158 SMFENVPSC 166

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2147610 AT5G19860 "AT5G19860" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 50/127 (39%), Positives = 74/127 (58%)

Query:    35 HSRTSHPLQSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLV 94
             HS       SI  V++LLP YGLP GL+P  +  +TL    G F + +  +C + F  LV
Sbjct:    23 HSLNEPDPDSISTVYELLPKYGLPSGLLPDTVTDFTLSDD-GRFVVHLPNSCEIEFDYLV 81

Query:    95 WYDKHIKGKLSYGAVHDVSGIQAKKLFLWLPVTGIET-VKNSDVLRFFVGALSEDLPAEQ 153
              YDK I G++ YG++ ++ GIQ KK F+WL V  I+  +  SD + F VG +++ L  +Q
Sbjct:    82 HYDKTISGRIGYGSITELKGIQVKKFFIWLDVDEIKVDLPPSDSIYFKVGFINKKLDIDQ 141

Query:   154 FQEIPQC 160
             F+ I  C
Sbjct:   142 FKTIHSC 148

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:505006197 AT1G61667 "AT1G61667" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 40/114 (35%), Positives = 67/114 (58%)

Query:    48 VHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKGKLSYG 107
             + +LL   GLP GL P +++SY+LD  TG   +++   C+  F+  V++D+ IK  LSYG
Sbjct:    22 IRNLLEARGLPGGLFPDNVESYSLDDKTGELEVQLQNPCFARFENRVYFDRVIKANLSYG 81

Query:   108 AVHDVSGIQAKKLFLWLPVTGIETVK-NSDVLRFFVGALSEDLPAEQFQEIPQC 160
              +  + G+  ++LFLWLPV GI     +S ++ F +G   + +    F++ P C
Sbjct:    82 GLVGLEGLTQEELFLWLPVKGIAVNDPSSGLVLFDIGVAHKQISRSLFEDPPVC 135

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2079701 AT3G07460 "AT3G07460" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 39/114 (34%), Positives = 65/114 (57%)

Query:    48 VHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKGKLSYG 107
             + ++L   GLP GL P  +K +T++  TG FS+ + ++C   ++  + YD+ + G + Y 
Sbjct:    30 IDEILLANGLPLGLFPKGVKGFTVNGETGRFSVYLNQSCQAKYETELHYDEIVSGTIGYA 89

Query:   108 AVHDVSGIQAKKLFLWLPVTGIET-VKNSDVLRFFVGALSEDLPAEQFQEIPQC 160
              + D+SGI A++LFLWL V GI   V +S ++ F VG L +      F+    C
Sbjct:    90 QIRDLSGISAQELFLWLQVKGIRVDVPSSGLIFFDVGVLRKQYSLSLFETPRDC 143

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2172094 AT5G54530 "AT5G54530" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 42/114 (36%), Positives = 63/114 (55%)

Query:    48 VHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKGKLSYG 107
             VHD+L   GLP GL+P ++ SY L    G   + +   CY  F+  V ++  ++G LSYG
Sbjct:    29 VHDVLRSEGLPAGLLPQEVDSYILHND-GRLEVFLAAPCYAKFETNVHFEAVVRGNLSYG 87

Query:   108 AVHDVSGIQAKKLFLWLPVTGIETVK-NSDVLRFFVGALSEDLPAEQFQEIPQC 160
             ++  V G+  K+LFLWL V  I     NS V+ F +G   + L    F++ P+C
Sbjct:    88 SLVGVEGLSQKELFLWLQVKDIVVENPNSGVIVFDIGVAFKQLSLSLFEDPPKC 141

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2079601 AT3G07470 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 37/114 (32%), Positives = 63/114 (55%)

Query:    48 VHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKGKLSYG 107
             ++++L   GLP G+ P  ++ +T D  TG FS+ + + C   ++  + YD +I G +   
Sbjct:    31 IYEILLANGLPSGIFPKGVREFTFDVETGRFSVYLNQACEAKYETEIHYDANITGTIGSA 90

Query:   108 AVHDVSGIQAKKLFLWLPVTGIET-VKNSDVLRFFVGALSEDLPAEQFQEIPQC 160
              + D+SGI A++LFLW PV GI   V +S ++ F VG + +      F+    C
Sbjct:    91 QISDLSGISAQELFLWFPVKGIRVDVPSSGLIYFDVGVVRKQYSLSLFETPRDC 144

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:505006096 AT1G02816 "AT1G02816" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 43/115 (37%), Positives = 62/115 (53%)

Query:    49 HDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQ---QLVWYDKHIKGKLS 105
             + LL  Y  P G++P  + SY LDKSTG F     ++C    Q   QL  Y   I G +S
Sbjct:    33 YTLLQSYNFPVGILPKGVVSYDLDKSTGQFHAYFNKSCSFALQGSYQLD-YKSTISGYIS 91

Query:   106 YGAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQC 160
                +  ++G++ K LFLWL +  +E ++N D L F VG  S +   ++F E PQC
Sbjct:    92 ENKITKLTGVKVKVLFLWLNI--VEVIRNGDELEFSVGITSANFEIDEFYESPQC 144

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2133254 AT4G02360 "AT4G02360" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 39/113 (34%), Positives = 59/113 (52%)

Query:    49 HDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQL-VWYDKHIKGKLSYG 107
             +D + LY LP G++P  +  Y L+  TG+F +    TC    Q   + Y   I G +S G
Sbjct:    30 YDAVKLYNLPPGILPKGVVDYELNPKTGNFKVYFNDTCEFTIQSYQLKYKSTISGVISPG 89

Query:   108 AVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQC 160
              V ++ G+  K LF W+ +  + ++  +D L F VG  S   PA  F+E PQC
Sbjct:    90 HVKNLKGVSVKVLFFWVNIAEV-SLDGAD-LDFSVGIASASFPAANFEESPQC 140

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006095 AT1G02813 [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 37/114 (32%), Positives = 61/114 (53%)

Query:    48 VHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQL-VWYDKHIKGKLSY 106
             V+ +L  Y LP+G++P  +  Y L++ TG F +    TC        V Y   I G ++ 
Sbjct:    25 VYQVLENYTLPRGILPEGVHDYDLNRRTGVFKVRFNTTCQFSIDSYKVKYKPVISGIITR 84

Query:   107 GAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQC 160
             G V  + G+  K LF W+ ++  E  ++ D + FFVGA SE+  ++ F + P+C
Sbjct:    85 GRVIRLIGVSVKVLFFWINIS--EVSRDGDDVEFFVGAASEEFSSKYFVDSPKC 136

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010584 "pollen exine formation" evidence=RCA

TAIR|locus:2133264 AT4G02370 "AT4G02370" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 39/115 (33%), Positives = 60/115 (52%)

Query:    49 HDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTC---YVHFQQLVWYDKHIKGKLS 105
             + LL  Y  P G++P  + +Y LD +TG F      +C    V   QL  Y   I G +S
Sbjct:    33 YSLLQSYNFPVGILPKGVVAYDLDTTTGKFHAYFNDSCSFNLVGSYQLN-YKSTISGYIS 91

Query:   106 YGAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQC 160
                +  ++G++ K LFLWL +  +E ++N D + F VG  S +   ++F E PQC
Sbjct:    92 ENKLKKLTGVKVKVLFLWLNI--VEVIRNGDEMEFSVGITSANFAIQEFLESPQC 144

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0048767 "root hair elongation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_I000076 hypothetical protein (160 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	173
pfam04398	108	pfam04398, DUF538, Protein of unknown function, DU	2e-38

>gnl|CDD|218064 pfam04398, DUF538, Protein of unknown function, DUF538

 Score =  126 bits (320), Expect = 2e-38
 Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 2/108 (1%)

Query: 48  VHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQ-LVWYDKHIKGKLSY 106
            ++LL  YGLP GL+P  +  YTLD++TG F + +  TC   F+   V YD  + G +S 
Sbjct: 2   AYELLEEYGLPVGLLPKGVTEYTLDETTGKFWVYLNGTCEFTFEGYSVRYDPTVTGYISK 61

Query: 107 GAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQF 154
           G +  + G++ K LFLW+P+  I +V + D L F VG LS+  PA+ F
Sbjct: 62  GRLSGLEGVKVKVLFLWVPIVEI-SVDDGDKLTFSVGVLSKSFPADAF 108

This family consists of several plant proteins of unknown function. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
PF04398	110	DUF538: Protein of unknown function, DUF538; Inter	100.0

>PF04398 DUF538: Protein of unknown function, DUF538; InterPro: IPR007493 This family consists of several plant proteins of unknown function

Probab=100.00  E-value=2.1e-46  Score=286.02  Aligned_cols=109  Identities=38%  Similarity=0.793  Sum_probs=83.3

Q ss_pred             CHHHhhhhcCCCCCCCCCCceeEEEecCCceEEEEEcceEEEEEe-EEEEEcceEEEEEecCccccccceEEEEEEeecc
Q 030681           47 DVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQ-QLVWYDKHIKGKLSYGAVHDVSGIQAKKLFLWLP  125 (173)
Q Consensus        47 tayelL~~~gLP~GLLP~~V~~Y~l~~~tG~f~V~L~~~C~~~f~-~~v~Y~~~ItG~l~~G~I~~L~GVkvK~lf~Wv~  125 (173)
                      ||||+|++||||+||||++|++|+||++||+|||+|+++|+|+|+ |+|+|+++|||+|++|+|++|+|||+|++|+|++
T Consensus         1 tayelL~~~glP~GLLP~~v~~y~l~~~tG~f~v~l~~~C~~~~~~~~v~Y~~~ItG~i~~g~i~~L~GVk~k~l~~W~~   80 (110)
T PF04398_consen    1 TAYELLEEYGLPRGLLPLGVTEYGLNRDTGFFWVKLKSPCEFRFEGYLVSYDSEITGYIEKGKIKNLTGVKVKELFLWVP   80 (110)
T ss_dssp             --HHHHHHHS-TT-TTTSSS-EEEE-TTT-SEEEE-SS-EEEESTTSEEEE-SEEEEEE-SS-EEEEES-EEE-SSSEES
T ss_pred             CHHHhHHHcCCCCCcCCCCceEEEEecCCcEEEEEecCCEEEEEEEEEEEEcCeEEEEECCCcCccccCEEEEEEEEEee
Confidence            699999999999999999999999999999999999999999999 7999999999999999999999999999999999


Q ss_pred             eeEEEEecCCCeEEEEEceeeecccccccCCC
Q 030681          126 VTGIETVKNSDVLRFFVGALSEDLPAEQFQEI  157 (173)
Q Consensus       126 I~~I~Vd~~~~~I~F~vG~isksFP~s~F~~~  157 (173)
                      |+||.+  ++|+|+|++|+++++||+++|+++
T Consensus        81 v~~i~~--~~~~i~F~~g~~s~sfp~~~F~~s  110 (110)
T PF04398_consen   81 VTEISV--DGDKIYFKVGGISKSFPVSAFEES  110 (110)
T ss_dssp             ---BEE---SSSEE-TTSSSS----TTTTSS-
T ss_pred             EEEEEE--cCCEEEEEEeeEeccCCHHHhccC
Confidence            999995  899999999999999999999985

; PDB: 1YDU_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	173
1ydu_A	170	Solution Nmr Structure Of At5g01610, An Arabidopsis		4e-06

>pdb|1YDU|A Chain A, Solution Nmr Structure Of At5g01610, An Arabidopsis Thaliana Protein Containing Duf538 Domain Length = 170

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 50  DLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQ--LVWYDKHIKGKLSYG 107
           +LL  Y LP G+ P D  +Y  D+ T   ++ +   C V ++   ++ +   + G L  G
Sbjct: 56  ELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKG 115
Query: 108 AVHDVSGIQAKKLFLWLPVTGIET 131
            + DV GI+  K+ +W+ VT I T
Sbjct: 116 KLTDVEGIKT-KVMIWVKVTSIST 138

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
1ydu_A	170	AT5G01610; DUF538, structural genomics, protein st	2e-33
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1 Length = 170

 Score =  115 bits (289), Expect = 2e-33
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 7/121 (5%)

Query: 48  VHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQ--QLVWYDKHIKGKLS 105
           + +LL  Y LP G+ P D  +Y  D+ T   ++ +   C V ++   ++ +   + G L 
Sbjct: 54  LPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLE 113

Query: 106 YGAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQCKSKVS 165
            G + DV GI+  K+ +W+ VT I T  ++  + F  G + +    + +  + +   +V 
Sbjct: 114 KGKLTDVEGIKT-KVMIWVKVTSIST--DASKVYFTAG-MKKSRSRDAY-GVQRNGLRVD 168

Query: 166 Q 166
           +
Sbjct: 169 K 169

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 28/170 (16%), Positives = 48/170 (28%), Gaps = 43/170 (25%)

Query: 1   MASPHSISLCLLFL-TLLSQTDLTFSLTITQKPFNHSRTSHPLQSIID-VHDLLPLYGLP 58
           + + +S    L  L  LL Q D  +    T +  + S     + SI   +  LL      
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNW----TSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 59  KGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQQLVWYDKHIKG-----KL----SYGAV 109
             L+   +    L                      V   K         K+     +  V
Sbjct: 245 NCLL---V----LLN--------------------VQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 110 HD-VSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIP 158
            D +S      + L      +   +   +L  ++    +DLP E     P
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
1ydu_A	170	AT5G01610; DUF538, structural genomics, protein st	100.0

>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1

Probab=100.00  E-value=3.9e-44  Score=290.49  Aligned_cols=117  Identities=24%  Similarity=0.500  Sum_probs=112.3

Q ss_pred             CCCCCHHHhhhhcCCCCCCCCCCceeEEEecCCceEEEEEcceEEEEEe--EEEEEcceEEEEEecCccccccceEEEEE
Q 030681           43 QSIIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQ--QLVWYDKHIKGKLSYGAVHDVSGIQAKKL  120 (173)
Q Consensus        43 ~~~~tayelL~~~gLP~GLLP~~V~~Y~l~~~tG~f~V~L~~~C~~~f~--~~v~Y~~~ItG~l~~G~I~~L~GVkvK~l  120 (173)
                      .+.+++||||++||||+||||++|++|+||++||+|||+|+++|+|+|+  |+|+|+++|||+|++|+|++|+|||+|+|
T Consensus        49 ~~~~ta~elL~e~gLP~GLLP~~V~~Y~l~~~tG~f~V~l~~~C~~~f~~~~~v~Y~~~VtG~l~~GkI~~L~GVk~K~L  128 (170)
T 1ydu_A           49 KMQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTKVM  128 (170)
T ss_dssp             TTTSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEESS
T ss_pred             cccccHHHHHHHcCCCCCcCCCCCeEEEEECCCcEEEEEeCCCEEEEecCccEEEEcCEEEEEEcCCcCccccCEEEEEE
Confidence            6678999999999999999999999999999999999999999999996  79999999999999999999999999999


Q ss_pred             EeecceeEEEEecCCCeEEEEEceeeecccccccCCCCCCCCc
Q 030681          121 FLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQCKSK  163 (173)
Q Consensus       121 f~Wv~I~~I~Vd~~~~~I~F~vG~isksFP~s~F~~~P~C~~~  163 (173)
                       +|++|++|.|  ++|+|+|++|+ +++||+++|+.+|+|...
T Consensus       129 -lWv~V~eI~v--~~~kI~F~vGi-~ksfp~saFe~~~~c~~~  167 (170)
T 1ydu_A          129 -IWVKVTSIST--DASKVYFTAGM-KKSRSRDAYGVQRNGLRV  167 (170)
T ss_dssp             -SEESCCCBEE--CSSSEECTTSS-SSCCCHHHHSSCCCCCCT
T ss_pred             -EEeeEEEEEE--eCCEEEEEEcC-cccccHHHhcCCcCCccc
Confidence             9999999996  79999999985 999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	173
d1ydua1	169	b.162.1.1 (A:2-170) Hypothetical protein At5g01610	4e-34

>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 169

class: All beta proteins
fold: At5g01610-like
superfamily: At5g01610-like
family: At5g01610-like
domain: Hypothetical protein At5g01610
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  115 bits (291), Expect = 4e-34
 Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 7/119 (5%)

Query: 48  VHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQ--QLVWYDKHIKGKLS 105
           + +LL  Y LP G+ P D  +Y  D+ T   ++ +   C V ++   ++ +   + G L 
Sbjct: 53  LPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLE 112

Query: 106 YGAVHDVSGIQAKKLFLWLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQCKSKV 164
            G + DV GI+  K+ +W+ VT I T  ++  + F  G + +    + +  + +   +V
Sbjct: 113 KGKLTDVEGIKT-KVMIWVKVTSIST--DASKVYFTAG-MKKSRSRDAY-GVQRNGLRV 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d1ydua1	169	Hypothetical protein At5g01610 {Thale cress (Arabi	100.0

>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: At5g01610-like
superfamily: At5g01610-like
family: At5g01610-like
domain: Hypothetical protein At5g01610
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=5e-43  Score=281.68  Aligned_cols=113  Identities=25%  Similarity=0.540  Sum_probs=105.8

Q ss_pred             CCCHHHhhhhcCCCCCCCCCCceeEEEecCCceEEEEEcceEEEEEe--EEEEEcceEEEEEecCccccccceEEEEEEe
Q 030681           45 IIDVHDLLPLYGLPKGLIPSDIKSYTLDKSTGSFSIEMTRTCYVHFQ--QLVWYDKHIKGKLSYGAVHDVSGIQAKKLFL  122 (173)
Q Consensus        45 ~~tayelL~~~gLP~GLLP~~V~~Y~l~~~tG~f~V~L~~~C~~~f~--~~v~Y~~~ItG~l~~G~I~~L~GVkvK~lf~  122 (173)
                      ..+++|||++||||+||||++|++|+||++||+|||+|+++|+|+|+  |+|+|+++|||+|++|+|++|+|||+| +|+
T Consensus        50 ~k~l~ELL~eygLP~GLLP~~V~~Y~l~~~TG~f~V~l~~~C~~~f~~sy~v~Y~~~VtG~ls~Gki~~L~GVkvK-lfl  128 (169)
T d1ydua1          50 QKPLPELLKEYDLPIGIFPGDATNYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTK-VMI  128 (169)
T ss_dssp             TSSCHHHHHHHSCTTCTTTSSSCEEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEE-SSS
T ss_pred             CCCHHHHHHhcCCCCccCCCCceEEEEECCCcEEEEEeCCCEEEEecCceEEEEcCEEEEEEcCCcCccccceEEE-EEE
Confidence            35799999999999999999999999999999999999999999997  899999999999999999999999999 789


Q ss_pred             ecceeEEEEecCCCeEEEEEceeeecccccccCCCCCCC
Q 030681          123 WLPVTGIETVKNSDVLRFFVGALSEDLPAEQFQEIPQCK  161 (173)
Q Consensus       123 Wv~I~~I~Vd~~~~~I~F~vG~isksFP~s~F~~~P~C~  161 (173)
                      |++|++|.+  ++|+|+|++| ++|+||+++||.+++|.
T Consensus       129 Wv~V~eI~v--d~~kI~F~vG-I~KsfP~daFE~prdg~  164 (169)
T d1ydua1         129 WVKVTSIST--DASKVYFTAG-MKKSRSRDAYGVQRNGL  164 (169)
T ss_dssp             EESCCCBEE--CSSSEECTTS-SSSCCCHHHHSSCCCCC
T ss_pred             EEEEEEEEE--cCCeEEEEec-ccccCCHHHccCCccce
Confidence            999999995  5899999999 69999999998865553