Citrus Sinensis ID: 030690

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MVMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccccccEEEcccccccEEEEcccccEEEcccccEEEEcccccHHHHHHHHHHHcccccccEEEcccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHcccccccccccEEc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHcccccccccccccccccccccccccccccEEEEEcccEEEEEcccccHHHHHHHHHHHcHHccccEEEccccccEEEccEEcccccEEcccccccHHHHHHHHHHHHHHccccccccccEEcc
Coil and Loop (DISEMBL)
MVMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLedsygtdfpsfmrrqkngylqlprgvtfwdndKEAELLRLgyvkpeviswsprILVLHNFLSMEECDYLRAIArphlqvstvvdtktgkgiksnvrtssgmflspeekkypMIQAIEKRISVfsqvpvengeLIQVLR
Flexible Loop (DISEMBL)
MVMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLRLGyvkpeviswsPRILVLHNFLSMEECDYLRAIARPhlqvstvvdtktgkgiksnvrtssgmflspeEKKYPMIQAIEKRIsvfsqvpvengeliqvlr
Low Complexity Region (SEG)
MVMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR
Disordered region (IsUnstruct)
******MKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTG*********************YPMIQAIEKRISVFSQVPV**********
Disordered Region (DISOPRED)
*****SM**VFGLLTFVTFGMIIGALFQLAFIR******************************WDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARP******************NVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR
Disordered Region (DISEMBL)
MVMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR
Disordered Region (DISPRO)
****PSMKIVFGLLTFVTFGMIIGALFQLAFIRK********************LQLPR*********EAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR
Transmembrane Helix (TMHMM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
P16924	516	Prolyl 4-hydroxylase subu	yes	no	0.664	0.222	0.306	5e-06
Q60716	537	Prolyl 4-hydroxylase subu	yes	no	0.485	0.156	0.325	1e-05
O15460	535	Prolyl 4-hydroxylase subu	yes	no	0.485	0.157	0.325	1e-05
P54001	534	Prolyl 4-hydroxylase subu	no	no	0.479	0.155	0.329	2e-05
Q5ZLK5	534	Prolyl 4-hydroxylase subu	no	no	0.664	0.215	0.290	2e-05
Q10576	559	Prolyl 4-hydroxylase subu	yes	no	0.531	0.164	0.255	0.0004

>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 9/124 (7%)

Query: 48  RRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAI 107
           RRQK  + +      ++D ++    + LG VK E     PRI+   + +S EE + ++ +
Sbjct: 285 RRQKRLFCR------YYDGNRNPRYI-LGPVKQEDEWDKPRIVRFLDIISDEEIETVKEL 337

Query: 108 ARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGE 167
           A+P L  +TV D +TGK   ++ R S   +LS  E   P++  I  RI   + + V   E
Sbjct: 338 AKPRLSRATVHDPETGKLTTAHYRVSKSAWLSGYES--PVVSRINTRIQDLTGLDVSTAE 395

Query: 168 LIQV 171
            +QV
Sbjct: 396 ELQV 399

Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Gallus gallus (taxid: 9031)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2

>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 86  SPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKY 145
           SP I+  ++ +S EE + ++ IA+P L  +TV D KTG    ++ R S   +L  EE   
Sbjct: 337 SPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWL--EEDDD 394

Query: 146 PMIQAIEKRISVFSQVPVENGELIQV 171
           P++  + +R+   + + V+  EL+QV
Sbjct: 395 PVVARVNRRMQHITGLTVKTAELLQV 420

Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: 2

>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 86  SPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKY 145
           SP I+  ++ +S EE + ++ IA+P L  +TV D KTG    ++ R S   +L  EE   
Sbjct: 335 SPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWL--EEDDD 392

Query: 146 PMIQAIEKRISVFSQVPVENGELIQV 171
           P++  + +R+   + + V+  EL+QV
Sbjct: 393 PVVARVNRRMQHITGLTVKTAELLQV 418

Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: 2

>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 87  PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYP 146
           PRI+  H+ +S  E + ++ +A+P L  +TV D +TGK   +  R S   +LS  E   P
Sbjct: 335 PRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRVSKSAWLSGYED--P 392

Query: 147 MIQAIEKRISVFSQVPVENGELIQV 171
           ++  I  RI   + + V   E +QV
Sbjct: 393 VVSRINMRIQDLTGLDVSTAEELQV 417

Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: 2

>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 9/124 (7%)

Query: 48  RRQKNGYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAI 107
           RRQK  + +      + D ++   LL +   K E    SP I+  ++ +S EE + ++ +
Sbjct: 305 RRQKRLFCR------YHDGNRNPHLL-IAPFKEEDEWDSPHIVRYYDVMSDEEIEKIKQL 357

Query: 108 ARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGE 167
           A+P L  +TV D KTG    ++ R S   +L  EE   P++  + +R+   + + V+  E
Sbjct: 358 AKPKLARATVRDPKTGVLTVASYRVSKSSWL--EEDDDPVVAKVNQRMQQITGLTVKTAE 415

Query: 168 LIQV 171
           L+QV
Sbjct: 416 LLQV 419

Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: 2

>sp|Q10576|P4HA1_CAEEL Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans GN=dpy-18 PE=1 SV=2

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 78  VKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMF 137
           +K E+  ++P  ++  + +S +E   ++ +A+P L  +TV D+ TGK + +  R S   +
Sbjct: 319 IKVEIKRFNPLAVLFKDVISDDEVAAIQELAKPKLARATVHDSVTGKLVTATYRISKSAW 378

Query: 138 LSPEEKKYPMIQAIEKRISVFSQVPVENGELIQV 171
           L  +E +  +++ + KRI   + + +E  E +Q+
Sbjct: 379 L--KEWEGDVVETVNKRIGYMTNLEMETAEELQI 410

Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
363814557	238	uncharacterized protein LOC100794585 [Gl	0.988	0.718	0.764	3e-73
255641158	195	unknown [Glycine max]	0.982	0.871	0.757	5e-73
224069056	287	predicted protein [Populus trichocarpa]	0.988	0.595	0.764	6e-73
356576923	287	PREDICTED: prolyl 4-hydroxylase subunit	0.988	0.595	0.758	6e-73
255637879	287	unknown [Glycine max]	0.988	0.595	0.764	1e-72
15224220	283	P4H isoform 1 [Arabidopsis thaliana] gi|	0.971	0.593	0.745	2e-67
449468746	290	PREDICTED: putative prolyl 4-hydroxylase	0.994	0.593	0.72	1e-65
297824279	283	AT-P4H-1 [Arabidopsis lyrata subsp. lyra	0.971	0.593	0.728	5e-65
225433714	287	PREDICTED: prolyl 4-hydroxylase subunit	0.988	0.595	0.666	5e-62
357445147	281	Prolyl 4-hydroxylase subunit alpha-1 [Me	0.942	0.580	0.707	1e-61

>gi|363814557|ref|NP_001242754.1| uncharacterized protein LOC100794585 [Glycine max] gi|255628535|gb|ACU14612.1| unknown [Glycine max]

 Score =  279 bits (713), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 133/174 (76%), Positives = 156/174 (89%), Gaps = 3/174 (1%)

Query: 3   MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQ---KNGYLQLPR 59
           MAP+M+IVFGLLTFVT GMIIGAL QLA IR+LEDSYGTD   F R +    + +LQLPR
Sbjct: 1   MAPAMRIVFGLLTFVTVGMIIGALSQLAIIRRLEDSYGTDSLPFRRLRGLDTDRHLQLPR 60

Query: 60  GVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVD 119
           GV FW+NDKEAE+LRLGYVKPEV++WSPRI++LHNFLSMEECDYLRA+A P L +STVVD
Sbjct: 61  GVPFWNNDKEAEILRLGYVKPEVLNWSPRIILLHNFLSMEECDYLRALALPRLHISTVVD 120

Query: 120 TKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
           TKTGKGIKS+VRTSSGMFL+ +E+KYPM+QAIEKRISV+SQ+P+ENGEL+QVLR
Sbjct: 121 TKTGKGIKSDVRTSSGMFLNSKERKYPMVQAIEKRISVYSQIPIENGELMQVLR 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255641158|gb|ACU20856.1| unknown [Glycine max]

 Score =  278 bits (712), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 131/173 (75%), Positives = 155/173 (89%), Gaps = 3/173 (1%)

Query: 3   MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQ---KNGYLQLPR 59
           MAP+M+IVFGLLTFVT GMIIGAL QLA IR+LEDS+GTD   F R +    + +LQLPR
Sbjct: 1   MAPAMRIVFGLLTFVTVGMIIGALSQLAIIRRLEDSHGTDSLPFSRLRGLDTDRHLQLPR 60

Query: 60  GVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVD 119
           G+ FW+NDKEAE+LRLGYVKPEV++WSPRI++LHNFLSMEECDYLRAIA P L +S VVD
Sbjct: 61  GIPFWNNDKEAEVLRLGYVKPEVLNWSPRIILLHNFLSMEECDYLRAIALPRLHISNVVD 120

Query: 120 TKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVL 172
           TKTGKGIKS+VRTSSGMFL+P+E+KYPM+QAIEKRISV+SQ+P+ENGEL+QVL
Sbjct: 121 TKTGKGIKSDVRTSSGMFLNPQERKYPMVQAIEKRISVYSQIPIENGELMQVL 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069056|ref|XP_002302889.1| predicted protein [Populus trichocarpa] gi|222844615|gb|EEE82162.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (711), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 133/174 (76%), Positives = 151/174 (86%), Gaps = 3/174 (1%)

Query: 3   MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMR---RQKNGYLQLPR 59
           MA SMKIVFGLL FVT GMI+GA FQLAFI KLEDSYGT FPSF R    Q + YLQLPR
Sbjct: 1   MASSMKIVFGLLAFVTAGMIVGAFFQLAFILKLEDSYGTKFPSFKRVRKLQSDAYLQLPR 60

Query: 60  GVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVD 119
           G++ WDND EA +LR+GYVKPE+ISWSPRI+VLH+FLS EECDYLRA+A+P L++STVVD
Sbjct: 61  GISHWDNDTEAAVLRIGYVKPEIISWSPRIIVLHDFLSSEECDYLRALAKPRLRISTVVD 120

Query: 120 TKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
            KTGKGI+S VRTSSGMFLS EEK Y ++QAIEKRISV+SQVP+ENGELIQVLR
Sbjct: 121 VKTGKGIESKVRTSSGMFLSSEEKTYQVVQAIEKRISVYSQVPIENGELIQVLR 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576923|ref|XP_003556579.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Glycine max]

 Score =  278 bits (711), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 132/174 (75%), Positives = 156/174 (89%), Gaps = 3/174 (1%)

Query: 3   MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQ---KNGYLQLPR 59
           MAP+M+IVFGLLTFVT GMIIGAL QLA IR+LEDS+GTD   F R +    + +LQLPR
Sbjct: 1   MAPAMRIVFGLLTFVTVGMIIGALSQLAIIRRLEDSHGTDSLPFSRLRGLDTDRHLQLPR 60

Query: 60  GVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVD 119
           G+ FW+NDKEAE+LRLGYVKPEV++WSPRI++LHNFLSMEECDYLRAIA P L +S VVD
Sbjct: 61  GIPFWNNDKEAEVLRLGYVKPEVLNWSPRIILLHNFLSMEECDYLRAIALPRLHISNVVD 120

Query: 120 TKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
           TKTGKGIKS+VRTSSGMFL+P+E+KYPM+QAIEKRISV+SQ+P+ENGEL+QVLR
Sbjct: 121 TKTGKGIKSDVRTSSGMFLNPQERKYPMVQAIEKRISVYSQIPIENGELMQVLR 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637879|gb|ACU19258.1| unknown [Glycine max]

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 133/174 (76%), Positives = 156/174 (89%), Gaps = 3/174 (1%)

Query: 3   MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQ---KNGYLQLPR 59
           MAP+M+IVFGLLTFVT GMIIGAL QLA IR+LEDSYGTD   F R +    + +LQLPR
Sbjct: 1   MAPAMRIVFGLLTFVTVGMIIGALSQLAIIRRLEDSYGTDSLPFRRLRGLDTDRHLQLPR 60

Query: 60  GVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVD 119
           GV FW+NDKEAE+LRLGYVKPEV++WSPRI++LHNFLSMEECDYLRA+A P L +STVVD
Sbjct: 61  GVPFWNNDKEAEILRLGYVKPEVLNWSPRIILLHNFLSMEECDYLRALALPRLHISTVVD 120

Query: 120 TKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
           TKTGKGIKS+VRTSSGMFL+ +E+KYPM+QAIEKRISV+SQ+P+ENGEL+QVLR
Sbjct: 121 TKTGKGIKSDVRTSSGMFLNSKERKYPMVQAIEKRISVYSQIPIENGELMQVLR 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224220|ref|NP_181836.1| P4H isoform 1 [Arabidopsis thaliana] gi|3763917|gb|AAC64297.1| hypothetical protein [Arabidopsis thaliana] gi|20197628|gb|AAM15158.1| hypothetical protein [Arabidopsis thaliana] gi|26450452|dbj|BAC42340.1| unknown protein [Arabidopsis thaliana] gi|29824245|gb|AAP04083.1| unknown protein [Arabidopsis thaliana] gi|330255112|gb|AEC10206.1| P4H isoform 1 [Arabidopsis thaliana]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 129/173 (74%), Positives = 148/173 (85%), Gaps = 5/173 (2%)

Query: 3   MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSF--MRRQKNGYLQLPRG 60
           MAP+MKIVFGLLTFVT GM+IG+L QLAFI +LEDSYGT FPS   +R Q   YL   R 
Sbjct: 1   MAPAMKIVFGLLTFVTVGMVIGSLLQLAFINRLEDSYGTGFPSLRGLRGQNTRYL---RD 57

Query: 61  VTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDT 120
           V+ W NDK+AELLR+G VKPEV+SWSPRI+VLH+FLS EEC+YL+AIARP LQVSTVVD 
Sbjct: 58  VSRWANDKDAELLRIGNVKPEVVSWSPRIIVLHDFLSPEECEYLKAIARPRLQVSTVVDV 117

Query: 121 KTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
           KTGKG+KS+VRTSSGMFL+  E+ YP+IQAIEKRI+VFSQVP ENGELIQVLR
Sbjct: 118 KTGKGVKSDVRTSSGMFLTHVERSYPIIQAIEKRIAVFSQVPAENGELIQVLR 170

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468746|ref|XP_004152082.1| PREDICTED: putative prolyl 4-hydroxylase-like [Cucumis sativus]

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 126/175 (72%), Positives = 145/175 (82%), Gaps = 3/175 (1%)

Query: 2   VMAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGY---LQLP 58
           +++  M+IVFGLLTFVT GMIIGAL QLAF+R+LEDS GT+F    R  K  Y    QLP
Sbjct: 1   MVSSQMRIVFGLLTFVTVGMIIGALLQLAFLRRLEDSIGTEFLPAGRLHKAQYDSQHQLP 60

Query: 59  RGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVV 118
           RG   W NDKEAE+LRLGYVKPEV+SWSPRI+VLHNFLS +ECDYL+ IA   L++STVV
Sbjct: 61  RGFPNWINDKEAEILRLGYVKPEVVSWSPRIIVLHNFLSTKECDYLKGIALARLEISTVV 120

Query: 119 DTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
           DTKTGKG+KS+ RTSSGMFLS  EK +PM+QAIEKRISV+SQVPVENGELIQVLR
Sbjct: 121 DTKTGKGVKSDFRTSSGMFLSHHEKNFPMVQAIEKRISVYSQVPVENGELIQVLR 175

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824279|ref|XP_002880022.1| AT-P4H-1 [Arabidopsis lyrata subsp. lyrata] gi|297325861|gb|EFH56281.1| AT-P4H-1 [Arabidopsis lyrata subsp. lyrata]

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 126/173 (72%), Positives = 145/173 (83%), Gaps = 5/173 (2%)

Query: 3   MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSF--MRRQKNGYLQLPRG 60
           MAP+MKIVFGLLTFVT GM+I +L QLAFI +LEDSYG  FPS   +R Q   YL   R 
Sbjct: 1   MAPAMKIVFGLLTFVTVGMVIASLLQLAFINRLEDSYGPGFPSLRGLRGQNTRYL---RD 57

Query: 61  VTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDT 120
           V+ W NDK+AELLR+G VKPEV+SWSPRI+VLH+FLS EEC+YL+AIARP LQVSTVVD 
Sbjct: 58  VSRWANDKDAELLRIGNVKPEVVSWSPRIIVLHDFLSPEECEYLKAIARPRLQVSTVVDV 117

Query: 121 KTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
           KTGKG+KS+VRTSSGMFL+  E+  P+IQAIEKRI+VFSQVP ENGELIQVLR
Sbjct: 118 KTGKGVKSDVRTSSGMFLTHVERSNPIIQAIEKRIAVFSQVPAENGELIQVLR 170

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433714|ref|XP_002268409.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Vitis vinifera] gi|296089634|emb|CBI39453.3| unnamed protein product [Vitis vinifera]

 Score =  242 bits (617), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 116/174 (66%), Positives = 143/174 (82%), Gaps = 3/174 (1%)

Query: 3   MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSF---MRRQKNGYLQLPR 59
           MA  MK V GLL  V+FGMI GAL QL FI  LE+  G  FPSF    +RQ +G LQL  
Sbjct: 1   MAAPMKFVIGLLALVSFGMIFGALLQLEFIGGLEEVDGKAFPSFRKVHKRQNDGSLQLHG 60

Query: 60  GVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVD 119
           G++ W NDK+A++LR+GYVKPE+++WSPRI++LH+FLS EECDYLRA+A P LQ+STVVD
Sbjct: 61  GISQWVNDKDADILRIGYVKPEILNWSPRIILLHSFLSSEECDYLRAMAEPLLQISTVVD 120

Query: 120 TKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
            +TGKGI+S+VRTSSGMFLSP++  YP+++AIEKRISV+SQVPVENGELIQVLR
Sbjct: 121 AQTGKGIQSDVRTSSGMFLSPDDSTYPIVRAIEKRISVYSQVPVENGELIQVLR 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357445147|ref|XP_003592851.1| Prolyl 4-hydroxylase subunit alpha-1 [Medicago truncatula] gi|355481899|gb|AES63102.1| Prolyl 4-hydroxylase subunit alpha-1 [Medicago truncatula]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 121/171 (70%), Positives = 140/171 (81%), Gaps = 8/171 (4%)

Query: 5   PSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSFMRRQKNGYLQLPRGVTFW 64
           P+MKIVFGLLTFVT GMIIGAL QLAFIR+LE        +  R        LPRG T+W
Sbjct: 4   PAMKIVFGLLTFVTIGMIIGALSQLAFIRRLELEEPFTTTTTTRSL------LPRGYTYW 57

Query: 65  DN--DKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKT 122
           +N  DKEA++LRLGYVKPEV+SWSPRI++LHNFLS EECDYLR +A P L++STVVD  T
Sbjct: 58  NNNNDKEAQILRLGYVKPEVLSWSPRIILLHNFLSYEECDYLRGVALPRLKISTVVDANT 117

Query: 123 GKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
           GKGIKS+VRTSSGMFLS EE+KYPMI AIEKRISV+SQ+P+ENGEL+QVLR
Sbjct: 118 GKGIKSDVRTSSGMFLSHEERKYPMIHAIEKRISVYSQIPIENGELMQVLR 168

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
TAIR|locus:2041001	283	AT-P4H-1 "P4H isoform 1" [Arab	0.971	0.593	0.745	5.4e-63
TAIR|locus:2156852	289	AT5G66060 [Arabidopsis thalian	0.520	0.311	0.586	3.4e-22
TAIR|locus:2012903	287	AT1G20270 [Arabidopsis thalian	0.520	0.313	0.543	4.9e-21
TAIR|locus:2827906	291	P4H5 "prolyl 4-hydroxylase 5"	0.520	0.309	0.554	2.1e-20
TAIR|locus:2125329	290	AT4G35810 [Arabidopsis thalian	0.520	0.310	0.543	2.1e-20
TAIR|locus:2125344	272	AT4G35820 [Arabidopsis thalian	0.520	0.330	0.44	2.3e-14
TAIR|locus:2081106	299	P4H2 "prolyl 4-hydroxylase 2"	0.537	0.311	0.431	6e-14
TAIR|locus:2144960	298	AT5G18900 [Arabidopsis thalian	0.537	0.312	0.431	1.7e-13
TAIR|locus:2088892	288	AT3G28490 [Arabidopsis thalian	0.508	0.305	0.406	2.4e-13
TAIR|locus:2118889	288	AT4G33910 [Arabidopsis thalian	0.566	0.340	0.306	8.8e-09

TAIR|locus:2041001 AT-P4H-1 "P4H isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 129/173 (74%), Positives = 148/173 (85%)

Query:     3 MAPSMKIVFGLLTFVTFGMIIGALFQLAFIRKLEDSYGTDFPSF--MRRQKNGYLQLPRG 60
             MAP+MKIVFGLLTFVT GM+IG+L QLAFI +LEDSYGT FPS   +R Q   YL   R 
Sbjct:     1 MAPAMKIVFGLLTFVTVGMVIGSLLQLAFINRLEDSYGTGFPSLRGLRGQNTRYL---RD 57

Query:    61 VTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDT 120
             V+ W NDK+AELLR+G VKPEV+SWSPRI+VLH+FLS EEC+YL+AIARP LQVSTVVD 
Sbjct:    58 VSRWANDKDAELLRIGNVKPEVVSWSPRIIVLHDFLSPEECEYLKAIARPRLQVSTVVDV 117

Query:   121 KTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
             KTGKG+KS+VRTSSGMFL+  E+ YP+IQAIEKRI+VFSQVP ENGELIQVLR
Sbjct:   118 KTGKGVKSDVRTSSGMFLTHVERSYPIIQAIEKRIAVFSQVPAENGELIQVLR 170

GO:0005506 "iron ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS;IDA

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 54/92 (58%), Positives = 66/92 (71%)

Query:    81 EVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSP 140
             E+ISW PR  V HNFL+ EEC YL  +A+PH++ STVVD KTGK   S VRTSSG FL+ 
Sbjct:    79 EIISWEPRASVYHNFLTKEECKYLIELAKPHMEKSTVVDEKTGKSTDSRVRTSSGTFLAR 138

Query:   141 EEKKYPMIQAIEKRISVFSQVPVENGELIQVL 172
                K   I+ IEKRIS F+ +PVE+GE +QVL
Sbjct:   139 GRDK--TIREIEKRISDFTFIPVEHGEGLQVL 168

GO:0005506 "iron ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 50/92 (54%), Positives = 67/92 (72%)

Query:    81 EVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSP 140
             EV+SW PR  V HNFLS EEC+YL ++A+PH+  STVVD++TGK   S VRTSSG FL  
Sbjct:    77 EVLSWEPRAFVYHNFLSKEECEYLISLAKPHMVKSTVVDSETGKSKDSRVRTSSGTFLRR 136

Query:   141 EEKKYPMIQAIEKRISVFSQVPVENGELIQVL 172
                K  +I+ IEKRI+ ++ +P ++GE +QVL
Sbjct:   137 GRDK--IIKTIEKRIADYTFIPADHGEGLQVL 166

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 51/92 (55%), Positives = 66/92 (71%)

Query:    81 EVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSP 140
             EVISW PR +V HNFL+ EEC++L ++A+P +  STVVD KTG    S VRTSSG FL  
Sbjct:    81 EVISWEPRAVVYHNFLTNEECEHLISLAKPSMVKSTVVDEKTGGSKDSRVRTSSGTFLRR 140

Query:   141 EEKKYPMIQAIEKRISVFSQVPVENGELIQVL 172
                +  +++ IEKRIS F+ +PVENGE +QVL
Sbjct:   141 GHDE--VVEVIEKRISDFTFIPVENGEGLQVL 170

GO:0005506 "iron ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0080147 "root hair cell development" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 50/92 (54%), Positives = 65/92 (70%)

Query:    81 EVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSP 140
             EVISW PR  V HNFL+ EEC++L ++A+P +  S VVD KTGK I S VRTSSG FL+ 
Sbjct:    81 EVISWEPRAFVYHNFLTNEECEHLISLAKPSMMKSKVVDVKTGKSIDSRVRTSSGTFLNR 140

Query:   141 EEKKYPMIQAIEKRISVFSQVPVENGELIQVL 172
                +  +++ IE RIS F+ +P ENGE +QVL
Sbjct:   141 GHDE--IVEEIENRISDFTFIPPENGEGLQVL 170

GO:0005506 "iron ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2125344 AT4G35820 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 44/100 (44%), Positives = 63/100 (63%)

Query:    81 EVISWSPRILVLHNFLSM--------EECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRT 132
             EVI+  PR  V HNFL++        EECD+L ++A+P +  S V +  TG G +S+ RT
Sbjct:    89 EVITKEPRAFVYHNFLALFFKICKTNEECDHLISLAKPSMARSKVRNALTGLGEESSSRT 148

Query:   133 SSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVL 172
             SSG F+     K  +++ IEKRIS F+ +P ENGE +QV+
Sbjct:   149 SSGTFIRSGHDK--IVKEIEKRISEFTFIPQENGETLQVI 186

GO:0005506 "iron ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 6.0e-14, P = 6.0e-14
 Identities = 41/95 (43%), Positives = 61/95 (64%)

Query:    79 KPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFL 138
             K + +S  PR  V   FL+  ECD+L ++A+ +LQ S V D   G+   S+VRTSSG F+
Sbjct:    37 KVKQVSSKPRAFVYEGFLTDLECDHLISLAKENLQRSAVADNDNGESQVSDVRTSSGTFI 96

Query:   139 SPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
             S  + K P++  IE ++S ++ +P ENGE +QVLR
Sbjct:    97 S--KGKDPIVSGIEDKLSTWTFLPKENGEDLQVLR 129

GO:0005506 "iron ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS;IDA

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IDA

GO:0080147 "root hair cell development" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 41/95 (43%), Positives = 60/95 (63%)

Query:    79 KPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFL 138
             K + +S  PR  V   FL+  ECD++ ++A+  L+ S V D  +G+   S VRTSSG F+
Sbjct:    36 KVKQVSSKPRAFVYEGFLTELECDHMVSLAKASLKRSAVADNDSGESKFSEVRTSSGTFI 95

Query:   139 SPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
             S  + K P++  IE +IS ++ +P ENGE IQVLR
Sbjct:    96 S--KGKDPIVSGIEDKISTWTFLPKENGEDIQVLR 128

GO:0005506 "iron ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 37/91 (40%), Positives = 61/91 (67%)

Query:    83 ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVV-DTKTGKGIKSNVRTSSGMFLSPE 141
             +SW+PR  +   FLS EECD+L  +A+  L+ S VV D  +G+   S VRTSSGMFL+  
Sbjct:    35 LSWTPRAFLYKGFLSDEECDHLIKLAKGKLEKSMVVADVDSGESEDSEVRTSSGMFLT-- 92

Query:   142 EKKYPMIQAIEKRISVFSQVPVENGELIQVL 172
             +++  ++  +E +++ ++ +P ENGE +Q+L
Sbjct:    93 KRQDDIVANVEAKLAAWTFLPEENGEALQIL 123

GO:0005506 "iron ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2118889 AT4G33910 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 8.8e-09, P = 8.8e-09
 Identities = 31/101 (30%), Positives = 55/101 (54%)

Query:    75 LGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTK--TGKGIKSNVRT 132
             +G +  +V+SW PR +   NF + E+C  +   A+ +L+ S +   K  T +  K   RT
Sbjct:    73 IGSIPFQVLSWRPRAIYFPNFATAEQCQAIIERAKVNLKPSALALRKGETAENTKGT-RT 131

Query:   133 SSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
             SSG F+S  E+    +  +E++I+  + +P  +GE   +LR
Sbjct:   132 SSGTFISASEESTGALDFVERKIARATMIPRSHGESFNILR 172

GO:0005506 "iron ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0031418 "L-ascorbic acid binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_II1012	hypothetical protein (287 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.IV.4171.1	proline dehydrogenase (EC-1.5.99.8) (435 aa)						•			0.899
	gw1.I.4241.1	hypothetical protein (326 aa)						•			0.899
	gw1.123.99.1	proline dehydrogenase (EC-1.5.99.8) (440 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_VI0132	pyrroline-5-carboxylate reductase (EC-1.5.1.2) (279 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	173
PLN00052	310	PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio	6e-24
smart00702	165	smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun	8e-10

>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional

 Score = 94.7 bits (235), Expect = 6e-24
 Identities = 44/91 (48%), Positives = 63/91 (69%), Gaps = 2/91 (2%)

Query: 83  ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
           +SW PRI V   FLS  ECD+L  +A+  +Q S V D K+GK + S VRTSSGMFL  ++
Sbjct: 50  VSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFL--DK 107

Query: 143 KKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
           ++ P++  IE+RI+ ++ +P EN E IQ+LR
Sbjct: 108 RQDPVVSRIEERIAAWTFLPEENAENIQILR 138

Length = 310

>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues

 Score = 54.3 bits (131), Expect = 8e-10
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 97  SMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRIS 156
           S  EC  L   A P      V          S  R S+G +L   E +  +I+ I +R++
Sbjct: 1   SPAECQKLLEEAEPLGWRGEVTRGIGNPNETSQYRQSNGTWLELLE-RDLVIERIRQRLA 59

Query: 157 VFSQVP---VENGELIQVLR 173
            F  +      + E  QV R
Sbjct: 60  DFLGLLAGLPLSAEDAQVAR 79

Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor. Length = 165

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
KOG1591	289	consensus Prolyl 4-hydroxylase alpha subunit [Amin	99.97
PLN00052	310	prolyl 4-hydroxylase; Provisional	99.92
smart00702	178	P4Hc Prolyl 4-hydroxylase alpha subunit homologues	99.45
PRK05467	226	Fe(II)-dependent oxygenase superfamily protein; Pr	89.21

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]

Probab=99.97  E-value=1.3e-31  Score=229.40  Aligned_cols=121  Identities=46%  Similarity=0.707  Sum_probs=108.7

Q ss_pred             ccccccccCCCc------------cEEEeCCCCCceeeecccceEEeccCCcEEEEcccCCHHHHHHHHHHhcCCCcccE
Q 030690           49 RQKNGYLQLPRG------------VTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVST  116 (173)
Q Consensus        49 ~~~~~y~~lcrg------------l~C~y~~~~~pfL~LaPlK~E~Ls~dP~Iv~~hdfLsd~E~e~Li~la~p~L~rS~  116 (173)
                      .++..|+..|+|            +.|+|...  ||++++|+|+|++||+|++++||||||++||++|+.+|+|+|++++
T Consensus        49 ~~~~~~~~~c~g~~~~~~~~~~~~~~~~~~~~--~~~~~ap~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~st  126 (289)
T KOG1591|consen   49 QEFTVYEQGCRGELPPLTKLTLRRLSCRNRAG--PFLRLAPVKLEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERST  126 (289)
T ss_pred             ccccchhhhccCccCccchhHhhhhhcccccC--cceeecchhhhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhcee
Confidence            566778888887            45555433  9999999999999999999999999999999999999999999999


Q ss_pred             ee-eCCCCCeeecceeeeeeeecCCCCccchHHHHHHHHHHHhcCCCCCCCccccccC
Q 030690          117 VV-DTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR  173 (173)
Q Consensus       117 V~-~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~RIadlTGL~~~~aE~LQVlr  173 (173)
                      |. +.++|....+.+|+|+++||..+.  ++++++|++||+++||+|.+++|+|||+|
T Consensus       127 v~~~~~~~~~~~~~~R~S~~t~l~~~~--~~~~~~i~~ri~~~T~l~~e~~E~lqVln  182 (289)
T KOG1591|consen  127 VVADKGTGHSTTSAVRTSSGTFLPDGA--SPVVSRIEQRIADLTGLPVENGESLQVLN  182 (289)
T ss_pred             eeccCCcccccceeeEecceeEecCCC--CHHHHHHHHHHHhccCCCcccCccceEEE
Confidence            94 556677777889999999999954  89999999999999999999999999987

>PLN00052 prolyl 4-hydroxylase; Provisional

Probab=99.92  E-value=6.5e-25  Score=189.81  Aligned_cols=98  Identities=45%  Similarity=0.739  Sum_probs=92.8

Q ss_pred             eecccceEEeccCCcEEEEcccCCHHHHHHHHHHhcCCCcccEeeeCCCCCeeecceeeeeeeecCCCCccchHHHHHHH
Q 030690           74 RLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEK  153 (173)
Q Consensus        74 ~LaPlK~E~Ls~dP~Iv~~hdfLsd~E~e~Li~la~p~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~  153 (173)
                      .+.|.|+|+|||+|+|++||||||++||++||++|++++++|+|++..+|+...+++|||+++||...+  +|++++|++
T Consensus        41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~--dpvv~~I~~  118 (310)
T PLN00052         41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQ--DPVVSRIEE  118 (310)
T ss_pred             CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCC--CHHHHHHHH
Confidence            358999999999999999999999999999999999999999999888888888899999999998765  899999999


Q ss_pred             HHHHhcCCCCCCCccccccC
Q 030690          154 RISVFSQVPVENGELIQVLR  173 (173)
Q Consensus       154 RIadlTGL~~~~aE~LQVlr  173 (173)
                      ||+++||+|.+++|+|||+|
T Consensus       119 Ria~~t~lp~~~~E~lQVlr  138 (310)
T PLN00052        119 RIAAWTFLPEENAENIQILR  138 (310)
T ss_pred             HHHHHhCCCcccCcceEEEe
Confidence            99999999999999999986

>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues

Probab=99.45  E-value=2.8e-13  Score=107.05  Aligned_cols=86  Identities=30%  Similarity=0.359  Sum_probs=75.7

Q ss_pred             CcEEEEcccCCHHHHHHHHHHhcCCCcccEeeeCCCCCeeecceeeeeeeecCCCCccchHHHHHHHHHHHhcCCC---C
Q 030690           87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVP---V  163 (173)
Q Consensus        87 P~Iv~~hdfLsd~E~e~Li~la~p~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~RIadlTGL~---~  163 (173)
                      |.|+++|||||++||+.|++++++.+.++.+.+..++....+++|+|+.+|+...+ .++++++|.+||+++++++   .
T Consensus         1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~-~~~~~~~l~~~i~~~~~~~~~~~   79 (178)
T smart00702        1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLELLK-GDLVIERIRQRLADFLGLLRGLP   79 (178)
T ss_pred             CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCCCC-CCHHHHHHHHHHHHHHCCCchhh
Confidence            89999999999999999999999999999988765443356789999999998763 2699999999999999998   7


Q ss_pred             CCCccccccC
Q 030690          164 ENGELIQVLR  173 (173)
Q Consensus       164 ~~aE~LQVlr  173 (173)
                      .+.|.+|++|
T Consensus        80 ~~~~~~~~~~   89 (178)
T smart00702       80 LSAEDAQVAR   89 (178)
T ss_pred             ccCcceEEEE
Confidence            8999999875

Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.

>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional

Probab=89.21  E-value=0.74  Score=38.56  Aligned_cols=62  Identities=19%  Similarity=0.274  Sum_probs=38.0

Q ss_pred             EEEEcccCCHHHHHHHHHHhcC-CCcccEeeeCCCCCeeecceeeeeeeecCCCCccchHHHHHHHHHHHhc
Q 030690           89 ILVLHNFLSMEECDYLRAIARP-HLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFS  159 (173)
Q Consensus        89 Iv~~hdfLsd~E~e~Li~la~p-~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~RIadlT  159 (173)
                      |+.++||||++||+++++.... .+....+.   .| ...+.+|....  +..+   ++..+.|.+||....
T Consensus         2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~t---aG-~~~~~vKnN~q--l~~d---~~~a~~l~~~i~~~L   64 (226)
T PRK05467          2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVT---AG-AQAAQVKNNQQ--LPED---SPLARELGNLILDAL   64 (226)
T ss_pred             eeeecccCCHHHHHHHHHHHHhcCCccCCcC---cC-ccchhcccccc--cCCC---CHHHHHHHHHHHHHH
Confidence            6789999999999999997763 33222221   11 11234454322  2333   588888888888654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	173
2jij_A	233	Crystal Structure Of The Apo Form Of Chlamydomonas		3e-18
3gze_A	225	Algal Prolyl 4-Hydroxylase Complexed With Zinc And		3e-18
2jig_A	224	Crystal Structure Of Chlamydomonas Reinhardtii Prol		3e-18
2v4a_A	233	Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd		7e-18
3itq_A	216	Crystal Structure Of A Prolyl 4-Hydroxylase From Ba		3e-08

>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Query: 83  ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
           +SWSPR  +L NFLS EECDY+   ARP +  S+VVD ++GK + S +RTS+G + +  E
Sbjct: 25  LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 84
Query: 143 KKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
               +I  IEKR++  + +P+EN E +QVL 
Sbjct: 85  DS--VISKIEKRVAQVTMIPLENHEGLQVLH 113

>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Query: 83  ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
           +SWSPR  +L NFLS EECDY+   ARP +  S+VVD ++GK + S +RTS+G + +  E
Sbjct: 17  LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 76
Query: 143 KKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
               +I  IEKR++  + +P+EN E +QVL 
Sbjct: 77  DS--VISKIEKRVAQVTMIPLENHEGLQVLH 105

>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Query: 83  ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
           +SWSPR  +L NFLS EECDY+   ARP +  S+VVD ++GK + S +RTS+G + +  E
Sbjct: 16  LSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 75
Query: 143 KKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
               +I  IEKR++  + +P+EN E +QVL 
Sbjct: 76  DS--VISKIEKRVAQVTMIPLENHEGLQVLH 104

>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 60/91 (65%), Gaps = 2/91 (2%)
Query: 83  ISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142
           +SWSPR  +L NFLS EECDY+   ARP    S+VVD ++GK + S +RTS+G + +  E
Sbjct: 25  LSWSPRAFLLKNFLSDEECDYIVEKARPKXVKSSVVDNESGKSVDSEIRTSTGTWFAKGE 84
Query: 143 KKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
               +I  IEKR++  + +P+EN E +QVL 
Sbjct: 85  DS--VISKIEKRVAQVTXIPLENHEGLQVLH 113

>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 87  PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYP 146
           P I+VL N LS EECD L  +++  L  S V  ++      +++RTSSG FL   E    
Sbjct: 39  PLIVVLGNVLSDEECDELIELSKSKLARSKVGSSRD----VNDIRTSSGAFLDDNE---- 90
Query: 147 MIQAIEKRISVFSQVPVENGELIQVL 172
           +   IEKRIS    VP  +GE + +L
Sbjct: 91  LTAKIEKRISSIXNVPASHGEGLHIL 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
2jig_A	224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	8e-34
3itq_A	216	Prolyl 4-hydroxylase, alpha subunit domain protei;	2e-32

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224

 Score =  118 bits (296), Expect = 8e-34
 Identities = 42/96 (43%), Positives = 62/96 (64%), Gaps = 2/96 (2%)

Query: 78  VKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMF 137
            +   +SWSPR  +L NFLS EECDY+   ARP +  S+VVD ++GK + S +RTS+G +
Sbjct: 11  GEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTW 70

Query: 138 LSPEEKKYPMIQAIEKRISVFSQVPVENGELIQVLR 173
            +  E    +I  IEKR++  + +P+EN E +QVL 
Sbjct: 71  FAKGE--DSVISKIEKRVAQVTMIPLENHEGLQVLH 104

>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216

 Score =  114 bits (286), Expect = 2e-32
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 10/122 (8%)

Query: 54  YLQLPRGVTFWDNDKEAELLRLGYVKPEVI--SWSPRILVLHNFLSMEECDYLRAIARPH 111
             Q+         D +  +++    + ++I     P I+VL N LS EECD L  +++  
Sbjct: 4   NNQIGENKEQTIFDHKGNVIKTEDREIQIISKFEEPLIVVLGNVLSDEECDELIELSKSK 63

Query: 112 LQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFSQVPVENGELIQV 171
           L  S V  ++      +++RTSSG FL        +   IEKRIS    VP  +GE + +
Sbjct: 64  LARSKVGSSRD----VNDIRTSSGAFLDDN----ELTAKIEKRISSIMNVPASHGEGLHI 115

Query: 172 LR 173
           L 
Sbjct: 116 LN 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
2jig_A	224	Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {	99.87
3itq_A	216	Prolyl 4-hydroxylase, alpha subunit domain protei;	99.81
3dkq_A	243	PKHD-type hydroxylase SBAL_3634; putative oxygenas	98.3
2hbt_A	247	EGL nine homolog 1; prolyl hydroxylase, hypoxia in	97.14

>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A

Probab=99.87  E-value=2.8e-22  Score=163.16  Aligned_cols=99  Identities=42%  Similarity=0.671  Sum_probs=92.2

Q ss_pred             eeecccceEEeccCCcEEEEcccCCHHHHHHHHHHhcCCCcccEeeeCCCCCeeecceeeeeeeecCCCCccchHHHHHH
Q 030690           73 LRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIE  152 (173)
Q Consensus        73 L~LaPlK~E~Ls~dP~Iv~~hdfLsd~E~e~Li~la~p~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~  152 (173)
                      ..++|.|+|+||++|+|++||||||++||++|++++++++++|++.+..+|....+.+|+|+++||...+  ++++++|.
T Consensus         6 ~~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~--~~~~~~i~   83 (224)
T 2jig_A            6 KEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE--DSVISKIE   83 (224)
T ss_dssp             -CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTC--SHHHHHHH
T ss_pred             ccccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCC--CHHHHHHH
Confidence            3578999999999999999999999999999999999999999999887787778899999999999864  79999999


Q ss_pred             HHHHHhcCCCCCCCccccccC
Q 030690          153 KRISVFSQVPVENGELIQVLR  173 (173)
Q Consensus       153 ~RIadlTGL~~~~aE~LQVlr  173 (173)
                      +||++++|+|....|.+||+|
T Consensus        84 ~ri~~~~gl~~~~~e~~qv~r  104 (224)
T 2jig_A           84 KRVAQVTMIPLENHEGLQVLH  104 (224)
T ss_dssp             HHHHHHHTCCGGGBCCCEEEE
T ss_pred             HHHHHHhCCCcccccceEEEe
Confidence            999999999999999999975

>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}

Probab=99.81  E-value=7e-21  Score=155.92  Aligned_cols=88  Identities=38%  Similarity=0.486  Sum_probs=75.6

Q ss_pred             cceEEeccCCcEEEEcccCCHHHHHHHHHHhcCCCcccEeeeCCCCCeeecceeeeeeeecCCCCccchHHHHHHHHHHH
Q 030690           78 VKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISV  157 (173)
Q Consensus        78 lK~E~Ls~dP~Iv~~hdfLsd~E~e~Li~la~p~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~RIad  157 (173)
                      ++++++|++|+|++||||||++||++|+++|++++++|+|...    ...+++|+|+++||.+    ++++++|.+||++
T Consensus        30 v~v~~l~~~P~i~~~~~fLs~~Ec~~Li~~a~~~l~~s~v~~~----~~~~~~RtS~~~wl~~----~~~v~~i~~Ri~~  101 (216)
T 3itq_A           30 IQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSS----RDVNDIRTSSGAFLDD----NELTAKIEKRISS  101 (216)
T ss_dssp             EEEEEEETTTTEEEEESCSCHHHHHHHHHHHHHHHC------------CCCCGGGTTCEECCC----CHHHHHHHHHHHH
T ss_pred             EEEEEeeCCCCEEEECCcCCHHHHHHHHHHhhcccccceeccC----CccCCcEeeeeEEeCC----cHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999998321    3457899999999986    4999999999999


Q ss_pred             hcCCCCCCCccccccC
Q 030690          158 FSQVPVENGELIQVLR  173 (173)
Q Consensus       158 lTGL~~~~aE~LQVlr  173 (173)
                      ++|++.+++|.+||+|
T Consensus       102 ~~gl~~~~~E~lqv~~  117 (216)
T 3itq_A          102 IMNVPASHGEGLHILN  117 (216)
T ss_dssp             HHTSCGGGBCCCEEEE
T ss_pred             hcCceeccccceeEEE
Confidence            9999999999999985

>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}

Probab=98.30  E-value=4e-07  Score=75.45  Aligned_cols=84  Identities=13%  Similarity=0.028  Sum_probs=60.7

Q ss_pred             EEeccCCcEEEEcccCCHHHHHHHHHHhcC-CCcccEeeeCCCCCeeecceeeeeeeecCCCCccchHHHHHHHHHHHhc
Q 030690           81 EVISWSPRILVLHNFLSMEECDYLRAIARP-HLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQAIEKRISVFS  159 (173)
Q Consensus        81 E~Ls~dP~Iv~~hdfLsd~E~e~Li~la~p-~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~~~~pvv~rI~~RIadlT  159 (173)
                      |-+-.++.++++|||||++||++|+++++. .+.++.+.    +..  ...++.++.||..+   +|++++|.+||.+++
T Consensus        13 ~~~~~~~~i~~i~dvLs~~Ec~~li~~~e~~~~~dg~~t----~g~--~~~~vr~n~~l~~d---~~~~~~l~~~i~~~l   83 (243)
T 3dkq_A           13 ENLYFQGMLIEIPNVFSKQEVSHLREQLDARRWIDGNQT----SGA--MATTRKRNQQLDKD---DPVAVALGQQIMDRL   83 (243)
T ss_dssp             -CCCCBTTBEEECCSSCHHHHHHHHHHHHTSCCEEECCC----SSB--SSCCCEEEEECCTT---CHHHHHHHHHHHHHH
T ss_pred             cccccCCCEEEECCCCCHHHHHHHHHHHhhCCCccCccc----CCC--ccccceeeeEECCC---CHHHHHHHHHHHHHH
Confidence            344568999999999999999999999963 33333222    111  12345566888855   699999999999999


Q ss_pred             CCC--------CCCCccccccC
Q 030690          160 QVP--------VENGELIQVLR  173 (173)
Q Consensus       160 GL~--------~~~aE~LQVlr  173 (173)
                      |..        ....|++|++|
T Consensus        84 ~~~~~f~~~~L~~~~e~~~~~r  105 (243)
T 3dkq_A           84 LAHPQFVSAALPLQFYPPLFNR  105 (243)
T ss_dssp             HTCHHHHHHHCEEEEEEEEEEE
T ss_pred             ccCcchhhcccccccccceEEE
Confidence            887        24577888764

>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*

Probab=97.14  E-value=0.0013  Score=54.01  Aligned_cols=54  Identities=17%  Similarity=0.251  Sum_probs=41.6

Q ss_pred             CcEEEEcccCCHHHHHHHHHHhcC-----CCcccEeeeCCCCCeeecceeeeeeeecCCCC
Q 030690           87 PRILVLHNFLSMEECDYLRAIARP-----HLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE  142 (173)
Q Consensus        87 P~Iv~~hdfLsd~E~e~Li~la~p-----~L~rS~V~~~~tG~~~~s~~RtS~~awL~~~~  142 (173)
                      +-+++++|||+++||+.|++.+..     .++++.+.+.  +......+|+++.+|+...+
T Consensus        26 ~g~~Vid~fLs~ee~~~L~~~~~~~~~~g~~~~a~i~~~--~~~~~~~iR~d~i~wl~~~~   84 (247)
T 2hbt_A           26 HGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQ--KSDSSKDIRGDKITWIEGKE   84 (247)
T ss_dssp             TSEEEESSSSCHHHHHHHHHHHHHHHHTTCSCSCCEEEC--CSSSTTCEECCEEEEECSCS
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHhhhhcCCccccccccc--cccccccccccceeeecccc
Confidence            346779999999999999998874     4677776552  12345689999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d2iuwa1	210	AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]	82.74

>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.74  E-value=3.6  Score=29.72  Aligned_cols=83  Identities=14%  Similarity=0.148  Sum_probs=47.1

Q ss_pred             ceEEeccCCc----EEEEcccCCHHHHHHHHHHhcC--CCcccEeeeCCCCCeeecceeee----------eeeecCCCC
Q 030690           79 KPEVISWSPR----ILVLHNFLSMEECDYLRAIARP--HLQVSTVVDTKTGKGIKSNVRTS----------SGMFLSPEE  142 (173)
Q Consensus        79 K~E~Ls~dP~----Iv~~hdfLsd~E~e~Li~la~p--~L~rS~V~~~~tG~~~~s~~RtS----------~~awL~~~~  142 (173)
                      +.-++++.|.    +.++.|||+++|.+.|.+....  .+.+.....  -|+.......+.          .........
T Consensus         7 ~~~~~~~~p~g~~~l~y~p~fLs~~e~~~Ll~~L~~e~~w~~~~~~~--~g~~~~~pR~~~~~~d~~y~y~~~~~~~~~~   84 (210)
T d2iuwa1           7 GVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIR--EDITYQQPRLTAWYGELPYTYSRITMEPNPH   84 (210)
T ss_dssp             EEEEEECCSSSCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEES--SSCEEECSSEEEEEECCCTTSCHHHHCCBSS
T ss_pred             CceEeccCCCCcceEEEECCcCCHHHHHHHHHHHHhhCCccccceec--cCcccceeeeeEEecCcCccccccccccCCC
Confidence            3457777775    8999999999999988774432  233222211  112111111111          111111110


Q ss_pred             ccchHHHHHHHHHHHhcCCCCC
Q 030690          143 KKYPMIQAIEKRISVFSQVPVE  164 (173)
Q Consensus       143 ~~~pvv~rI~~RIadlTGL~~~  164 (173)
                       -.+.+..+.+++...++.+.+
T Consensus        85 -~~~~l~~l~~~~~~~~~~~~~  105 (210)
T d2iuwa1          85 -WHPVLRTLKNRIEENTGHTFN  105 (210)
T ss_dssp             -CCHHHHHHHHHHHHHHSCCCC
T ss_pred             -CcHHHHHHHHhhhhhcCccch
Confidence             147899999999999888764