Citrus Sinensis ID: 030705

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRERRNAGAEPCY
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHcEEEEEEEEEcccccEEEEEcccccEEEEEEEEEccccccccccccEEEEEEEcccccEEEEEEEccccEEEEEEEccccEEEEEEEcccccccEEEEEEEEEEcccccccccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHccEEEEEccccccEEEHHHHcccEEEEEEEEEEccccccccccccEEEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEEcccccccEEEEEEEEEcccEcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAediksnsmtvgkynvvnpndghplpeshklTVRVTsaygnsyhyadrvdsgqfaftaaEAGDYMACFwavdhspqttvtidfdwrtgvqakdwsnvakkgsvDVMELELKKLYDTVSSIHQEMFYLRErrnagaepcy
Flexible Loop (DISEMBL)
MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTgvqakdwsnvakkgsvdVMELELKKLYDTVSSIHQEMFYLRErrnagaepcy
Low Complexity Region (SEG)
MIRltltlvlvigilssTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRERRNAGAEPCY
Disordered region (IsUnstruct)
**RLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVN**********HKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLR***********
Disordered Region (DISOPRED)
**RLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKD***********VMELELKKLYDTVSSIHQEMFYLRE**********
Disordered Region (DISEMBL)
MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRERR********
Disordered Region (DISPRO)
*IRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRERRNAGAEPCY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRERRNAGAEPCY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q9LQY3	214	Transmembrane emp24 domai	yes	no	0.913	0.738	0.683	2e-65
Q8VY92	214	Transmembrane emp24 domai	no	no	0.919	0.742	0.635	8e-61
Q8GYG1	212	Transmembrane emp24 domai	no	no	0.942	0.768	0.588	7e-59
O81045	213	Transmembrane emp24 domai	no	no	0.867	0.704	0.569	4e-50
Q9LJV9	225	Transmembrane emp24 domai	no	no	0.872	0.671	0.509	4e-46
Q6IDL4	217	Transmembrane emp24 domai	no	no	0.884	0.705	0.386	3e-31
Q8RWM6	216	Transmembrane emp24 domai	no	no	0.763	0.611	0.404	2e-26
Q9FVU0	212	Transmembrane emp24 domai	no	no	0.930	0.759	0.361	1e-25
F4J4Y0	217	Transmembrane emp24 domai	no	no	0.861	0.686	0.320	2e-18
Q9D1D4	219	Transmembrane emp24 domai	yes	no	0.878	0.694	0.235	4e-10

>sp|Q9LQY3|P24D9_ARATH Transmembrane emp24 domain-containing protein p24delta9 OS=Arabidopsis thaliana GN=At1g26690 PE=2 SV=1

 Score =  248 bits (632), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 108/158 (68%), Positives = 137/158 (86%)

Query: 7   TLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLT 66
           T++L + I S  SQSL FE+QS  TKCI+EDIKSNSMTVGKY VVNPN+ HP P+SHK++
Sbjct: 10  TILLFLAISSQVSQSLHFELQSGRTKCISEDIKSNSMTVGKYTVVNPNEAHPSPQSHKIS 69

Query: 67  VRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAK 126
           +RVTS+YGN+YH+A+ V+SGQFAFTA E+GDYMAC+ AVDH P+ T++IDFDWRTGVQ+K
Sbjct: 70  IRVTSSYGNTYHHAEDVESGQFAFTAVESGDYMACYTAVDHKPEVTLSIDFDWRTGVQSK 129

Query: 127 DWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164
            WS+VAKK  V+VME ++K+L +TV+SIH+EMFYLRER
Sbjct: 130 SWSSVAKKSQVEVMEFDVKRLIETVNSIHEEMFYLRER 167

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY92|P24DA_ARATH Transmembrane emp24 domain-containing protein p24delta10 OS=Arabidopsis thaliana GN=At1g69460 PE=1 SV=1

 Score =  232 bits (592), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 101/159 (63%), Positives = 134/159 (84%)

Query: 7   TLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLT 66
           T++L++ I S  S SL F++ S  TKCIAEDIKSNSMTVGKYN+ NP++G  LP++HK++
Sbjct: 10  TMLLILAIWSPISHSLHFDLHSGRTKCIAEDIKSNSMTVGKYNIDNPHEGQALPQTHKIS 69

Query: 67  VRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAK 126
           V+VTS  GN+YH+A++VDSGQFAF+A EAGDYMACF AVDH P+ +++IDF+W+TGVQ+K
Sbjct: 70  VKVTSNSGNNYHHAEQVDSGQFAFSAVEAGDYMACFTAVDHKPEVSLSIDFEWKTGVQSK 129

Query: 127 DWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRERR 165
            W+NVAKK  V+VME E+K L DTV+SIH+EM+YLR+R 
Sbjct: 130 SWANVAKKSQVEVMEFEVKSLLDTVNSIHEEMYYLRDRE 168

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYG1|P24D7_ARATH Transmembrane emp24 domain-containing protein p24delta7 OS=Arabidopsis thaliana GN=At1g14010 PE=2 SV=1

 Score =  226 bits (575), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 96/163 (58%), Positives = 131/163 (80%)

Query: 3   RLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPES 62
           R +  ++L++ ILS  + S+R+E+ S HTKCI+E+I +N+MT+GKY+++NP++ HPLP S
Sbjct: 4   RRSSIVLLILSILSPVTLSIRYELLSGHTKCISEEIHANAMTIGKYSIINPHEDHPLPSS 63

Query: 63  HKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTG 122
           HK+TVRVTS  G +YH +D V+SGQF+F A E GDY++CF AVDH P+TT+ IDFDWRTG
Sbjct: 64  HKVTVRVTSPQGTAYHESDGVESGQFSFVAVETGDYISCFSAVDHKPETTLIIDFDWRTG 123

Query: 123 VQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRERR 165
           +  KDWSNVAKK  V+ ME E+KKL++TV+ IH EMFYLR+R 
Sbjct: 124 IHTKDWSNVAKKSQVETMEFEVKKLFETVNGIHDEMFYLRDRE 166

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|O81045|P24D8_ARATH Transmembrane emp24 domain-containing protein p24delta8 OS=Arabidopsis thaliana GN=At2g03290 PE=1 SV=1

 Score =  197 bits (500), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 86/151 (56%), Positives = 118/151 (78%), Gaps = 1/151 (0%)

Query: 21  SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPN-DGHPLPESHKLTVRVTSAYGNSYHY 79
           S+R+E++S+ TKCI E+I  N+M++GKY +VNPN D HPLP+SHK+ V+V    G + H 
Sbjct: 22  SMRYELKSSKTKCIGEEIHENAMSIGKYFIVNPNEDNHPLPDSHKIIVKVMPPQGKNLHE 81

Query: 80  ADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDV 139
           AD+V++GQF+FTA E G Y+AC  A+D+ P+TT+TIDFDW+TGV +K+W+NVAKK  VD+
Sbjct: 82  ADKVEAGQFSFTAYENGSYVACITAIDYKPETTLTIDFDWKTGVHSKEWTNVAKKSQVDM 141

Query: 140 MELELKKLYDTVSSIHQEMFYLRERRNAGAE 170
           ME ++K L DTV SIH+EM+YLRER     E
Sbjct: 142 MEYQVKTLMDTVISIHEEMYYLREREEEMQE 172

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). On Golgi membranes, acts as primary receptor for ARF1-GDP which is involved in COPI-vesicle formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJV9|P24DB_ARATH Transmembrane emp24 domain-containing protein p24delta11 OS=Arabidopsis thaliana GN=At3g29070 PE=2 SV=1

 Score =  183 bits (465), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 77/151 (50%), Positives = 112/151 (74%)

Query: 20  QSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHY 79
           +S+R +++S +TKCI++DIK+N MTVG Y++VNPN+GH LP SHKL V V+S  G S+H+
Sbjct: 34  ESMRLDMESGNTKCISDDIKTNYMTVGTYSIVNPNEGHHLPPSHKLFVTVSSPKGKSHHH 93

Query: 80  ADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDV 139
           A+ V+SG+F FTA E GDYM CF A  + P     +DF+W++GV+AKDW+ +AK+G + +
Sbjct: 94  AENVESGKFVFTAEETGDYMTCFVAPGYRPTAKFAVDFEWKSGVEAKDWTTIAKRGQITM 153

Query: 140 MELELKKLYDTVSSIHQEMFYLRERRNAGAE 170
           +E+E++KL D   +IH+EMF L ER     E
Sbjct: 154 LEVEVRKLLDVTETIHEEMFQLIEREREMQE 184

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6IDL4|P24D3_ARATH Transmembrane emp24 domain-containing protein p24delta3 OS=Arabidopsis thaliana GN=At1g09580 PE=1 SV=1

 Score =  134 bits (337), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 104/158 (65%), Gaps = 5/158 (3%)

Query: 8   LVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTV 67
           L+ ++ ++    +++  ++    TKC++E+I+SN + +  Y +++  D   +P    ++V
Sbjct: 17  LLFLVPVMIPVGEAVWLDVPPTGTKCVSEEIQSNVVVLADYLIIS-EDHEVMP---TISV 72

Query: 68  RVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHS-PQTTVTIDFDWRTGVQAK 126
           +VTS YGN+ H  + V  GQFAFT  E+G+Y+ACFWA + S     V+I+ DWRTG+ AK
Sbjct: 73  KVTSPYGNNLHNMENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGIAAK 132

Query: 127 DWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164
           DW+++AKK  ++ +ELE++KL   V +IH+ + YLR R
Sbjct: 133 DWASIAKKEKIEGVELEIRKLEGAVEAIHENILYLRNR 170

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWM6|P24D5_ARATH Transmembrane emp24 domain-containing protein p24delta5 OS=Arabidopsis thaliana GN=At1g21900 PE=1 SV=1

 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/136 (40%), Positives = 88/136 (64%), Gaps = 4/136 (2%)

Query: 31  TKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAF 90
           TKC++E+I+SN + +  Y VV+ ++    P    ++ +VTS YGN+ H+ + V  GQFAF
Sbjct: 38  TKCVSEEIQSNVVVLADYYVVDEHNPENTP---AVSSKVTSPYGNNLHHQENVTHGQFAF 94

Query: 91  TAAEAGDYMACFWA-VDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYD 149
           T  EAG+Y+ACFW    H     +T+  DW+ G+ AKDW +VAKK  ++ +EL+L++L  
Sbjct: 95  TTQEAGNYLACFWIDSSHHLANPITLGVDWKMGIAAKDWDSVAKKEKIEGVELQLRRLEG 154

Query: 150 TVSSIHQEMFYLRERR 165
            V SI + + Y+++R 
Sbjct: 155 LVLSIRENLNYIKDRE 170

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). Interacts with p24beta2 at endoplasmic reticulum export sites for endoplasmic reticulum exit and coupled transport to the Golgi apparatus. Once in the Golgi, interacts very efficiently with the COPI machinery for retrograde transport back to the endoplasmic reticulum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVU0|P24D4_ARATH Transmembrane emp24 domain-containing protein p24delta4 OS=Arabidopsis thaliana GN=At1g57620 PE=1 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 100/166 (60%), Gaps = 5/166 (3%)

Query: 1   MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLP 60
           MI  T+ L  +I  LS   +++   +    +KC++E+I+SN + +  Y V++  + H + 
Sbjct: 5   MIPTTILLSALIFSLSPICEAVWLTVPHTGSKCVSEEIQSNVIVLADYLVIS--EEHSIF 62

Query: 61  ESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHS-PQTTVTIDFDW 119
            +  ++V+VT+ YG   H+ +   +GQFAFT  E+G Y+ACF A   S      +I+ DW
Sbjct: 63  PT--VSVKVTAPYGTVLHHRENTTNGQFAFTTQESGTYLACFEADAKSHGNKDFSINIDW 120

Query: 120 RTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRERR 165
           +TG+ AKDW ++A+K  ++ +ELE KKL   V +IH+ + YLR R 
Sbjct: 121 KTGIAAKDWDSIARKEKIEGVELEFKKLEGAVEAIHENLIYLRNRE 166

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|F4J4Y0|P24D6_ARATH Transmembrane emp24 domain-containing protein p24delta6 OS=Arabidopsis thaliana GN=At3g10780 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 7/156 (4%)

Query: 13  GILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSA 72
           G L    +++   +  +  +C+ E+I++N + V  Y  ++       P    L VRVTS 
Sbjct: 18  GSLFPGVEAIWLTVPESGERCVYEEIQANVVVVLDYICIDDAFTQLGP---TLDVRVTSP 74

Query: 73  YGNSYHYADRVDSGQFAFTAAEAGDYMACFWA----VDHSPQTTVTIDFDWRTGVQAKDW 128
           YG   +    V  GQ AFT +E+G ++AC         HS  ++V +  DW+ G++AKDW
Sbjct: 75  YGKELYKIANVTHGQAAFTTSESGTFLACLAMHHDQSHHSVNSSVIVSLDWKMGIRAKDW 134

Query: 129 SNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164
            +VAKK  ++ +ELE+++  +  S+I   + YLR R
Sbjct: 135 DSVAKKEKIEGVELEIRRSTEYASAIRANILYLRIR 170

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9D1D4|TMEDA_MOUSE Transmembrane emp24 domain-containing protein 10 OS=Mus musculus GN=Tmed10 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 77/157 (49%), Gaps = 5/157 (3%)

Query: 8   LVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTV 67
            +L++G   S+   + F +     KC+ E+I  + +  G Y + + + G     +H   +
Sbjct: 20  FLLLLG--PSSVLGISFHLPVNSRKCLREEIHKDLLVTGAYEITDQSGGAGGLRTH---L 74

Query: 68  RVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKD 127
           ++T + G+  +  +    G+FAFT  +   +  CF +          +  D + GV+AK+
Sbjct: 75  KITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKN 134

Query: 128 WSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164
           +  +AK   +  +E+EL++L D   SI  +  Y+++R
Sbjct: 135 YEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKR 171

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED2 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport involved in the biogenesis of COPI vesicles and vesicle coat recruitment. On Golgi membranes, acts as primary receptor for ARF1-GDP which is involved in COPI-vesicle formation. Increases coatomer-dependent GTPase-activating activity of ARFGAP2. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2LR1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Involved in trafficking of amyloid beta A4 protein and soluble APP-beta release (independent of modulation of gamma-secretase activity). As part of the presenilin-dependent gamma-secretase complex regulates gamma-cleavages of the amyloid beta A4 protein to yield amyloid-beta 40 (Abeta40). Involved in organization of the Golgi apparatus.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
224098928	216	predicted protein [Populus trichocarpa]	0.930	0.745	0.770	8e-73
225462930	218	PREDICTED: transmembrane emp24 domain-co	0.982	0.779	0.729	2e-70
363807104	221	uncharacterized protein LOC100817584 pre	0.936	0.733	0.734	5e-70
118489897	214	unknown [Populus trichocarpa x Populus d	0.953	0.771	0.738	7e-70
255562952	215	Transmembrane emp24 domain-containing pr	0.924	0.744	0.737	2e-69
224112183	214	predicted protein [Populus trichocarpa]	0.953	0.771	0.726	1e-68
388500600	218	unknown [Lotus japonicus]	0.849	0.674	0.775	4e-68
351726337	220	uncharacterized protein LOC100499866 pre	0.878	0.690	0.756	9e-68
388490748	218	unknown [Lotus japonicus]	0.843	0.669	0.780	9e-68
147853846	202	hypothetical protein VITISV_026964 [Viti	0.843	0.722	0.801	2e-67

>gi|224098928|ref|XP_002311321.1| predicted protein [Populus trichocarpa] gi|118483721|gb|ABK93754.1| unknown [Populus trichocarpa] gi|222851141|gb|EEE88688.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (710), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 124/161 (77%), Positives = 146/161 (90%)

Query: 6   LTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKL 65
           L ++ VIG+LSS S+SLRFE++S HTKCI+EDIKSNSMTVGKY++VNP+D  PLPESHKL
Sbjct: 11  LVIMTVIGLLSSPSKSLRFELESGHTKCISEDIKSNSMTVGKYSIVNPHDSQPLPESHKL 70

Query: 66  TVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQA 125
           TVRVTS+YGNSYHY++RV+SGQFAFTAAEAGDYMACFWA DH P  T+++DFDW+TGV A
Sbjct: 71  TVRVTSSYGNSYHYSERVESGQFAFTAAEAGDYMACFWAADHKPTVTLSVDFDWKTGVAA 130

Query: 126 KDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRERRN 166
           KDWSNVAKKGSVDVME+ELKK+YDTV SI +EM YLRER +
Sbjct: 131 KDWSNVAKKGSVDVMEMELKKMYDTVISIQEEMNYLRERED 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462930|ref|XP_002267401.1| PREDICTED: transmembrane emp24 domain-containing protein bai-like [Vitis vinifera]

 Score =  270 bits (689), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/170 (72%), Positives = 143/170 (84%)

Query: 1   MIRLTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLP 60
           MI +   ++L +G L    QS+RFE++S HTKCIAEDIK++SMTVGKY+VVNPNDG+P+P
Sbjct: 8   MIGVVAGVILNLGFLLGGVQSIRFELESGHTKCIAEDIKADSMTVGKYSVVNPNDGYPIP 67

Query: 61  ESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWR 120
           +SHK+TVRVTSAYGN+YHYAD VDSGQFAF AAEAGDYMACFW V H P  T+TID DW+
Sbjct: 68  DSHKVTVRVTSAYGNNYHYADLVDSGQFAFPAAEAGDYMACFWVVYHKPPLTLTIDLDWK 127

Query: 121 TGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRERRNAGAE 170
           TGV AKDWSNVAKKG VDVMELELKKLYDTV+SIH+EMFYLR R     E
Sbjct: 128 TGVAAKDWSNVAKKGQVDVMELELKKLYDTVTSIHEEMFYLRGREEEMQE 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807104|ref|NP_001242591.1| uncharacterized protein LOC100817584 precursor [Glycine max] gi|255641664|gb|ACU21104.1| unknown [Glycine max]

 Score =  268 bits (685), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 119/162 (73%), Positives = 140/162 (86%)

Query: 9   VLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVR 68
           +L++ + SS+S+SLRFE+QS HTKCI+EDIKSNSMTVGKY +VN N+G PLP+SH++TVR
Sbjct: 19  LLILVLFSSSSESLRFELQSGHTKCISEDIKSNSMTVGKYQIVNSNEGQPLPDSHRVTVR 78

Query: 69  VTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDW 128
           VTS+YGN+YHY DRV +G FAF A EAGDYM CFWAVDH+P  T+T+DFDW+TGV AKDW
Sbjct: 79  VTSSYGNNYHYGDRVQTGHFAFAAVEAGDYMTCFWAVDHNPVETLTVDFDWKTGVAAKDW 138

Query: 129 SNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRERRNAGAE 170
           SNVAKKG VDVMELELKKL DTVSSIH+EMFYLRER     E
Sbjct: 139 SNVAKKGQVDVMELELKKLQDTVSSIHEEMFYLREREEEMQE 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489897|gb|ABK96746.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  268 bits (684), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 146/168 (86%), Gaps = 3/168 (1%)

Query: 1   MIRLTLTLVL---VIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGH 57
           M R  L L+L   VI ILSSTS+S+RFE+QS +TKCIAEDIKSNSMTVGKY++VNP+DG 
Sbjct: 1   MSRFNLYLLLITTVIAILSSTSKSIRFELQSGNTKCIAEDIKSNSMTVGKYSIVNPHDGQ 60

Query: 58  PLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDF 117
           PLP S+KLTVRVTS+YGN+YH+++ V+SGQFAFTA+EAGDYMACFWA DH P  T+ IDF
Sbjct: 61  PLPASYKLTVRVTSSYGNNYHHSELVESGQFAFTASEAGDYMACFWAADHKPAVTLNIDF 120

Query: 118 DWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRERR 165
           DW+TGV AKDW+NVAKKGSVDVMELELKK+YDTV S+ +EM YLRER 
Sbjct: 121 DWKTGVAAKDWTNVAKKGSVDVMELELKKMYDTVISVQEEMNYLRERE 168

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562952|ref|XP_002522481.1| Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis] gi|223538366|gb|EEF39973.1| Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 118/160 (73%), Positives = 140/160 (87%)

Query: 11  VIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVT 70
           ++G+LSST++SLRF++QS  TKCIAEDI+SN+MTVGKY+VVNPN+G PLP +H LTVRVT
Sbjct: 15  IVGLLSSTTESLRFDLQSGQTKCIAEDIQSNAMTVGKYSVVNPNEGQPLPTTHSLTVRVT 74

Query: 71  SAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSN 130
           S+YGNSYHYA+ V SGQFAFTAAEAGDYM CFWA DH PQ T+T+DFDW+TGV AKDW+N
Sbjct: 75  SSYGNSYHYAEHVPSGQFAFTAAEAGDYMTCFWAADHKPQVTLTVDFDWKTGVAAKDWTN 134

Query: 131 VAKKGSVDVMELELKKLYDTVSSIHQEMFYLRERRNAGAE 170
           VAKKGS+DVMELELKKL+DTV SI +EM+ LRER     E
Sbjct: 135 VAKKGSIDVMELELKKLHDTVISIQEEMYSLREREEQMQE 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112183|ref|XP_002316111.1| predicted protein [Populus trichocarpa] gi|224112187|ref|XP_002316113.1| predicted protein [Populus trichocarpa] gi|118482364|gb|ABK93105.1| unknown [Populus trichocarpa] gi|222865151|gb|EEF02282.1| predicted protein [Populus trichocarpa] gi|222865153|gb|EEF02284.1| predicted protein [Populus trichocarpa]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/168 (72%), Positives = 146/168 (86%), Gaps = 3/168 (1%)

Query: 1   MIRLTLTLVL---VIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGH 57
           M R  L L+L   VI ILSSTS+S+RFE++S +TKCIAEDIKSNSMTVGKY++VNP+DG 
Sbjct: 1   MSRFNLYLLLITTVIAILSSTSKSIRFELESGNTKCIAEDIKSNSMTVGKYSIVNPHDGQ 60

Query: 58  PLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDF 117
           PLP+S+KLTVRVTS+ GN+YH+++ V+SGQFAFTA+EAGDYMACFWA DH P  T+ IDF
Sbjct: 61  PLPDSYKLTVRVTSSSGNNYHHSELVESGQFAFTASEAGDYMACFWAADHKPAVTLNIDF 120

Query: 118 DWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRERR 165
           DW+TGV AKDW+NVAKKGSVDVMELELKK+YDTV S+ +EM YLRER 
Sbjct: 121 DWKTGVAAKDWTNVAKKGSVDVMELELKKMYDTVISVQEEMNYLRERE 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500600|gb|AFK38366.1| unknown [Lotus japonicus]

 Score =  262 bits (669), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 114/147 (77%), Positives = 135/147 (91%)

Query: 19  SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH 78
           ++SLRFE+QS HTKCI+EDIKSNSMTVGKY+++NP +G PLP++H++TVRVTS+YGN+YH
Sbjct: 26  TESLRFELQSGHTKCISEDIKSNSMTVGKYSIINPTEGFPLPDTHRVTVRVTSSYGNNYH 85

Query: 79  YADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVD 138
           Y DRV+SGQFAF AAEAGDYM+CFWA DH+P  T+TIDF+W+TGV AKDWSNVAKKG VD
Sbjct: 86  YGDRVESGQFAFVAAEAGDYMSCFWAADHTPAITLTIDFEWKTGVAAKDWSNVAKKGQVD 145

Query: 139 VMELELKKLYDTVSSIHQEMFYLRERR 165
           VMELELKKL DTVSSIH+EMFYLRER 
Sbjct: 146 VMELELKKLQDTVSSIHEEMFYLRERE 172

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726337|ref|NP_001237123.1| uncharacterized protein LOC100499866 precursor [Glycine max] gi|255627251|gb|ACU13970.1| unknown [Glycine max]

 Score =  261 bits (666), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 115/152 (75%), Positives = 133/152 (87%)

Query: 19  SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH 78
           ++SLRFEIQS HTKCI+EDIKSNSMTVGKY +V+PN+G PLP++H+ TVRVTS+YGN+YH
Sbjct: 28  TESLRFEIQSGHTKCISEDIKSNSMTVGKYQIVSPNEGQPLPDAHRFTVRVTSSYGNNYH 87

Query: 79  YADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVD 138
           Y DRV +GQFAF A EAGDYM CFWAVDH+P  T+T+DFDW+TGV AKDWSNVAKKG VD
Sbjct: 88  YGDRVQTGQFAFAAVEAGDYMTCFWAVDHNPVETLTVDFDWKTGVAAKDWSNVAKKGQVD 147

Query: 139 VMELELKKLYDTVSSIHQEMFYLRERRNAGAE 170
           VMELELKKL DTVSSIH+EMFYLRE+     E
Sbjct: 148 VMELELKKLQDTVSSIHEEMFYLREKEEEMQE 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490748|gb|AFK33440.1| unknown [Lotus japonicus]

 Score =  261 bits (666), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 114/146 (78%), Positives = 135/146 (92%)

Query: 19  SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH 78
           ++SLRFE+QS HTKCI+EDIKSNSMTVGKY+++NPN+G PLP++H++TVRVTS+YGN+YH
Sbjct: 26  TESLRFELQSGHTKCISEDIKSNSMTVGKYSIINPNEGFPLPDTHRVTVRVTSSYGNNYH 85

Query: 79  YADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVD 138
           Y DRV+SGQFAF AAEAGDYM+CFWA  H+P  T+TIDF+W+TGV AKDWSNVAKKG VD
Sbjct: 86  YGDRVESGQFAFVAAEAGDYMSCFWAAVHTPAITLTIDFEWKTGVAAKDWSNVAKKGQVD 145

Query: 139 VMELELKKLYDTVSSIHQEMFYLRER 164
           VMELELKKL DTVSSIH+EMFYLRER
Sbjct: 146 VMELELKKLQDTVSSIHEEMFYLRER 171

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853846|emb|CAN83809.1| hypothetical protein VITISV_026964 [Vitis vinifera]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 117/146 (80%), Positives = 133/146 (91%)

Query: 10  LVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRV 69
           ++IG L    QS+RFE+QSAHTKCIAEDIK++SMTVGKY+VVNPNDG+P+P+SHK+TVRV
Sbjct: 7   MMIGFLLGGVQSIRFELQSAHTKCIAEDIKADSMTVGKYSVVNPNDGYPIPDSHKVTVRV 66

Query: 70  TSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWS 129
           TSAYGN+YHYADRVDSGQFAF AAEAGDYMACFW +DH P  T+TID DW+TGV AKDWS
Sbjct: 67  TSAYGNNYHYADRVDSGQFAFPAAEAGDYMACFWVLDHKPPLTLTIDLDWKTGVAAKDWS 126

Query: 130 NVAKKGSVDVMELELKKLYDTVSSIH 155
           NVAKKG VDVMELELKKLYDTV+SIH
Sbjct: 127 NVAKKGQVDVMELELKKLYDTVTSIH 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
TAIR|locus:2200630	214	AT1G26690 [Arabidopsis thalian	0.843	0.682	0.712	8.4e-58
TAIR|locus:2007196	214	AT1G69460 [Arabidopsis thalian	0.843	0.682	0.664	1.1e-53
TAIR|locus:2014864	212	AT1G14010 [Arabidopsis thalian	0.832	0.679	0.631	3.5e-52
TAIR|locus:2056976	213	AT2G03290 [Arabidopsis thalian	0.832	0.676	0.586	1.1e-46
TAIR|locus:2056730	166	AT2G03040 [Arabidopsis thalian	0.832	0.867	0.586	3e-46
TAIR|locus:2092788	225	AT3G29070 [Arabidopsis thalian	0.838	0.644	0.524	1.5e-42
TAIR|locus:2012335	217	AT1G09580 [Arabidopsis thalian	0.815	0.649	0.410	1.6e-29
TAIR|locus:2201098	216	p24delta5 "p24 subfamily delta	0.751	0.601	0.419	1.5e-26
TAIR|locus:2206520	212	AT1G57620 [Arabidopsis thalian	0.757	0.617	0.398	4.2e-24
DICTYBASE|DDB_G0277923	221	empD "emp24/gp25L/p24 family p	0.838	0.656	0.318	5.4e-15

TAIR|locus:2200630 AT1G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 104/146 (71%), Positives = 130/146 (89%)

Query:    19 SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH 78
             SQSL FE+QS  TKCI+EDIKSNSMTVGKY VVNPN+ HP P+SHK+++RVTS+YGN+YH
Sbjct:    22 SQSLHFELQSGRTKCISEDIKSNSMTVGKYTVVNPNEAHPSPQSHKISIRVTSSYGNTYH 81

Query:    79 YADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVD 138
             +A+ V+SGQFAFTA E+GDYMAC+ AVDH P+ T++IDFDWRTGVQ+K WS+VAKK  V+
Sbjct:    82 HAEDVESGQFAFTAVESGDYMACYTAVDHKPEVTLSIDFDWRTGVQSKSWSSVAKKSQVE 141

Query:   139 VMELELKKLYDTVSSIHQEMFYLRER 164
             VME ++K+L +TV+SIH+EMFYLRER
Sbjct:   142 VMEFDVKRLIETVNSIHEEMFYLRER 167

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2007196 AT1G69460 [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 97/146 (66%), Positives = 126/146 (86%)

Query:    19 SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH 78
             S SL F++ S  TKCIAEDIKSNSMTVGKYN+ NP++G  LP++HK++V+VTS  GN+YH
Sbjct:    22 SHSLHFDLHSGRTKCIAEDIKSNSMTVGKYNIDNPHEGQALPQTHKISVKVTSNSGNNYH 81

Query:    79 YADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVD 138
             +A++VDSGQFAF+A EAGDYMACF AVDH P+ +++IDF+W+TGVQ+K W+NVAKK  V+
Sbjct:    82 HAEQVDSGQFAFSAVEAGDYMACFTAVDHKPEVSLSIDFEWKTGVQSKSWANVAKKSQVE 141

Query:   139 VMELELKKLYDTVSSIHQEMFYLRER 164
             VME E+K L DTV+SIH+EM+YLR+R
Sbjct:   142 VMEFEVKSLLDTVNSIHEEMYYLRDR 167

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2014864 AT1G14010 [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 91/144 (63%), Positives = 120/144 (83%)

Query:    21 SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA 80
             S+R+E+ S HTKCI+E+I +N+MT+GKY+++NP++ HPLP SHK+TVRVTS  G +YH +
Sbjct:    22 SIRYELLSGHTKCISEEIHANAMTIGKYSIINPHEDHPLPSSHKVTVRVTSPQGTAYHES 81

Query:    81 DRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVM 140
             D V+SGQF+F A E GDY++CF AVDH P+TT+ IDFDWRTG+  KDWSNVAKK  V+ M
Sbjct:    82 DGVESGQFSFVAVETGDYISCFSAVDHKPETTLIIDFDWRTGIHTKDWSNVAKKSQVETM 141

Query:   141 ELELKKLYDTVSSIHQEMFYLRER 164
             E E+KKL++TV+ IH EMFYLR+R
Sbjct:   142 EFEVKKLFETVNGIHDEMFYLRDR 165

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2056976 AT2G03290 [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 85/145 (58%), Positives = 117/145 (80%)

Query:    21 SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPN-DGHPLPESHKLTVRVTSAYGNSYHY 79
             S+R+E++S+ TKCI E+I  N+M++GKY +VNPN D HPLP+SHK+ V+V    G + H 
Sbjct:    22 SMRYELKSSKTKCIGEEIHENAMSIGKYFIVNPNEDNHPLPDSHKIIVKVMPPQGKNLHE 81

Query:    80 ADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDV 139
             AD+V++GQF+FTA E G Y+AC  A+D+ P+TT+TIDFDW+TGV +K+W+NVAKK  VD+
Sbjct:    82 ADKVEAGQFSFTAYENGSYVACITAIDYKPETTLTIDFDWKTGVHSKEWTNVAKKSQVDM 141

Query:   140 MELELKKLYDTVSSIHQEMFYLRER 164
             ME ++K L DTV SIH+EM+YLRER
Sbjct:   142 MEYQVKTLMDTVISIHEEMYYLRER 166

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2056730 AT2G03040 [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 85/145 (58%), Positives = 116/145 (80%)

Query:    21 SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPN-DGHPLPESHKLTVRVTSAYGNSYHY 79
             S+R+E++S+ TKCI E+I  N+M++GKY +VNPN D HPLP+SHK+ V+V    G + H 
Sbjct:    22 SMRYELKSSKTKCIGEEIHENAMSIGKYFIVNPNEDHHPLPDSHKIIVKVMPPQGKNLHE 81

Query:    80 ADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDV 139
             AD V++GQF+FTA E G Y+AC  A+D+ P+TT+TIDFDW+TGV +K+W+NVAKK  VD+
Sbjct:    82 ADNVEAGQFSFTAYENGSYVACITAIDYKPETTLTIDFDWKTGVHSKEWTNVAKKSQVDM 141

Query:   140 MELELKKLYDTVSSIHQEMFYLRER 164
             ME ++K L DTV SIH+EM+YLRER
Sbjct:   142 MEYQVKTLMDTVISIHEEMYYLRER 166

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2092788 AT3G29070 [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 76/145 (52%), Positives = 111/145 (76%)

Query:    20 QSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHY 79
             +S+R +++S +TKCI++DIK+N MTVG Y++VNPN+GH LP SHKL V V+S  G S+H+
Sbjct:    34 ESMRLDMESGNTKCISDDIKTNYMTVGTYSIVNPNEGHHLPPSHKLFVTVSSPKGKSHHH 93

Query:    80 ADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDV 139
             A+ V+SG+F FTA E GDYM CF A  + P     +DF+W++GV+AKDW+ +AK+G + +
Sbjct:    94 AENVESGKFVFTAEETGDYMTCFVAPGYRPTAKFAVDFEWKSGVEAKDWTTIAKRGQITM 153

Query:   140 MELELKKLYDTVSSIHQEMFYLRER 164
             +E+E++KL D   +IH+EMF L ER
Sbjct:   154 LEVEVRKLLDVTETIHEEMFQLIER 178

GO:0005739 "mitochondrion" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2012335 AT1G09580 [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 60/146 (41%), Positives = 98/146 (67%)

Query:    20 QSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHY 79
             +++  ++    TKC++E+I+SN + +  Y +++  D   +P    ++V+VTS YGN+ H 
Sbjct:    29 EAVWLDVPPTGTKCVSEEIQSNVVVLADYLIIS-EDHEVMPT---ISVKVTSPYGNNLHN 84

Query:    80 ADRVDSGQFAFTAAEAGDYMACFWAVDHSP-QTTVTIDFDWRTGVQAKDWSNVAKKGSVD 138
              + V  GQFAFT  E+G+Y+ACFWA + S     V+I+ DWRTG+ AKDW+++AKK  ++
Sbjct:    85 MENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGIAAKDWASIAKKEKIE 144

Query:   139 VMELELKKLYDTVSSIHQEMFYLRER 164
              +ELE++KL   V +IH+ + YLR R
Sbjct:   145 GVELEIRKLEGAVEAIHENILYLRNR 170

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2201098 p24delta5 "p24 subfamily delta 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 57/136 (41%), Positives = 89/136 (65%)

Query:    31 TKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAF 90
             TKC++E+I+SN + +  Y VV   D H    +  ++ +VTS YGN+ H+ + V  GQFAF
Sbjct:    38 TKCVSEEIQSNVVVLADYYVV---DEHNPENTPAVSSKVTSPYGNNLHHQENVTHGQFAF 94

Query:    91 TAAEAGDYMACFWAVD--HSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLY 148
             T  EAG+Y+ACFW +D  H     +T+  DW+ G+ AKDW +VAKK  ++ +EL+L++L 
Sbjct:    95 TTQEAGNYLACFW-IDSSHHLANPITLGVDWKMGIAAKDWDSVAKKEKIEGVELQLRRLE 153

Query:   149 DTVSSIHQEMFYLRER 164
               V SI + + Y+++R
Sbjct:   154 GLVLSIRENLNYIKDR 169

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=IDA

GO:0030134 "ER to Golgi transport vesicle" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2206520 AT1G57620 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 55/138 (39%), Positives = 88/138 (63%)

Query:    30 HT--KCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQ 87
             HT  KC++E+I+SN + +  Y V++  + H +  +  ++V+VT+ YG   H+ +   +GQ
Sbjct:    32 HTGSKCVSEEIQSNVIVLADYLVIS--EEHSIFPT--VSVKVTAPYGTVLHHRENTTNGQ 87

Query:    88 FAFTAAEAGDYMACFWAVDHSP-QTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKK 146
             FAFT  E+G Y+ACF A   S      +I+ DW+TG+ AKDW ++A+K  ++ +ELE KK
Sbjct:    88 FAFTTQESGTYLACFEADAKSHGNKDFSINIDWKTGIAAKDWDSIARKEKIEGVELEFKK 147

Query:   147 LYDTVSSIHQEMFYLRER 164
             L   V +IH+ + YLR R
Sbjct:   148 LEGAVEAIHENLIYLRNR 165

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0277923 empD "emp24/gp25L/p24 family protein D" [Dictyostelium discoideum (taxid:44689)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 50/157 (31%), Positives = 80/157 (50%)

Query:    19 SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNV---VNPNDGHP---LPESHKLTVRVTSA 72
             S S  FE+++A  KCI E+ + +++  GK+ V   ++ N       +  S ++   V   
Sbjct:    19 SYSFMFEVRAADEKCIVEEFRQDTLVNGKFEVSDRLSKNIAFQYEVVMASMQMKFYVRGP 78

Query:    73 YGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTV-----TIDFDWRTGVQAKD 127
              G+         +G  AF A EAGDY  CF   ++ P         T+  + +TGV+A D
Sbjct:    79 TGDLILVNHDASTGVIAFNAQEAGDYSFCFLD-NYRPGAQAMPLSRTVSLEIKTGVEAND 137

Query:   128 WSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER 164
             +S+V  KG +   E+ELKK+ D V SI  E+ Y++ R
Sbjct:   138 YSDVITKGQLKPSEIELKKIEDVVDSIKVEILYMKNR 174

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LQY3	P24D9_ARATH	No assigned EC number	0.6835	0.9132	0.7383	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_VIII0726 SubName- Full=Putative uncharacterized protein; (216 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	173
pfam01105	178	pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOL	4e-34

>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD

 Score =  118 bits (297), Expect = 4e-34
 Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 14/147 (9%)

Query: 21  SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNS---Y 77
           +L FE+ +   +C  E++   ++  G Y V++  +         +   +T   GN    Y
Sbjct: 1   ALTFELPAGEKECFYEEVPKGTLVTGSYQVISGGN-------LDIDFTITDPDGNGNVIY 53

Query: 78  HYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSV 137
              DR   G+F+FTA E+G+Y  CF     S  ++ T+ FD + G +AKD   +AKK  +
Sbjct: 54  SKEDRKSGGKFSFTATESGEYKFCFSN-SFSTFSSKTVSFDIKVGEEAKD---IAKKEKL 109

Query: 138 DVMELELKKLYDTVSSIHQEMFYLRER 164
           D +E ELKKL D ++ I +E  YLRER
Sbjct: 110 DPLEEELKKLEDQLNDIKREQKYLRER 136

Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in. The GOLD domain is always found combined with lipid- or membrane-association domains. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
KOG1691	210	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1690	215	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1692	201	consensus Putative cargo transport protein EMP24 (	100.0
KOG1693	209	consensus emp24/gp25L/p24 family of membrane traff	99.97
PF01105	183	EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro	99.95
KOG3287	236	consensus Membrane trafficking protein, emp24/gp25	99.93
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	95.51
smart00557	93	IG_FLMN Filamin-type immunoglobulin domains. These	92.38
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	90.73
PF13860	81	FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.	90.69
PF04151	70	PPC: Bacterial pre-peptidase C-terminal domain; In	90.19
PF11589	106	DUF3244: Domain of unknown function (DUF3244); Int	88.89
PF15417	132	DUF4624: Domain of unknown function (DUF4624)	86.78
PRK06655	225	flgD flagellar basal body rod modification protein	83.75
PF00630	101	Filamin: Filamin/ABP280 repeat; InterPro: IPR01786	83.61
PRK12812	259	flgD flagellar basal body rod modification protein	82.38
PF13620	82	CarboxypepD_reg: Carboxypeptidase regulatory-like	82.26
PF05738	70	Cna_B: Cna protein B-type domain; InterPro: IPR008	81.57
KOG3285	203	consensus Spindle assembly checkpoint protein [Cel	81.31
PRK12813	223	flgD flagellar basal body rod modification protein	81.0
PHA03376	221	BARF1; Provisional	80.85

>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.4e-37  Score=227.38  Aligned_cols=164  Identities=49%  Similarity=0.838  Sum_probs=147.5

Q ss_pred             hHHHHHHHHHHHhhcceeEEEEEeCCccceeeeeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeecc
Q 030705            4 LTLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRV   83 (173)
Q Consensus         4 ~~~~~~~~l~ll~~~~~al~f~l~~~~~~Cf~e~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~   83 (173)
                      .+..+++++++++..+.|+.|+|+++.++|+.|++.+|..+.|.|.+.++.-+.    .+.+.+.|.||.|+.+++.++.
T Consensus         5 ~~~~~l~i~~~~~~~~~a~~f~v~~~~~kCi~EeI~~n~lv~g~y~i~~~~~~~----~~~~~~~Vts~~G~~~~~~env   80 (210)
T KOG1691|consen    5 CLSLLLLIFLLLLPLVHALRFDVPSKTTKCISEEIHENVLVVGDYEIINPNGDH----SHKLSVKVTSPYGNNLHSKENV   80 (210)
T ss_pred             hHHHHHHHHHHHhhhhheEEEEecCCCCEeehhhhccCeEEEEEEEEecCCCCc----cceEEEEEEcCCCceeehhhcc
Confidence            345556666677789999999999999999999999999999999999764211    1589999999999999999999


Q ss_pred             ccceEEEEeeccCceeEEEEecCC--CCCceEEEEEEEeecccccCccchhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 030705           84 DSGQFAFTAAEAGDYMACFWAVDH--SPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYL  161 (173)
Q Consensus        84 ~~g~f~f~~~~~G~y~iCf~n~~~--~~~~~~~V~f~~~~g~~~~d~~~~a~~~~l~~l~~~l~~l~~~l~~I~~~q~y~  161 (173)
                      ++|+|+|++.++|.|.+||.+...  .+.....|+||++.|.+++||+++||+++++|+|.++++|++.++.|+++..|+
T Consensus        81 ~~gqFaFta~e~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~~YL  160 (210)
T KOG1691|consen   81 TKGQFAFTAEESGMYEACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEMYYL  160 (210)
T ss_pred             ccceEEEEeccCCcEEEEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999433  234569999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccC
Q 030705          162 RERRNAGAEP  171 (173)
Q Consensus       162 r~re~~~r~~  171 (173)
                      |.||++||++
T Consensus       161 r~REeemr~~  170 (210)
T KOG1691|consen  161 REREEEMRNT  170 (210)
T ss_pred             HHHHHHHHhh
Confidence            9999999986

>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-35  Score=217.84  Aligned_cols=164  Identities=21%  Similarity=0.329  Sum_probs=146.7

Q ss_pred             HHHHHHHHHHhhcceeEEEEEeCCccceeeeeccCCcEEEEEEEEE--cCCCCCC-CCCCceEEEEEeCCCCC--eEEee
Q 030705            6 LTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVV--NPNDGHP-LPESHKLTVRVTSAYGN--SYHYA   80 (173)
Q Consensus         6 ~~~~~~l~ll~~~~~al~f~l~~~~~~Cf~e~~~~~~~v~~~y~v~--~~~~~~~-~~~~~~v~v~I~dp~g~--~l~~~   80 (173)
                      +.++++|++|+..+.|++|++..+++|||++++|++++++|+|.+.  +...+.| ...+.++.|.|+||.++  +|.++
T Consensus         5 ~~~~lll~~l~~~~~a~yFy~~~~e~KCF~eelpk~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~q   84 (215)
T KOG1690|consen    5 MRLLLLLLLLATQVQALYFYIAGTEKKCFIEELPKGTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLSQ   84 (215)
T ss_pred             HHHHHHHHHHHhhccEEEEEecCCcccchhhhCCCCcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEee
Confidence            6778888888999999999999999999999999999999999886  4433333 23478999999999877  89999


Q ss_pred             eccccceEEEEeeccCceeEEEEecCCC--CCceEEEEEEEeecccccCccchhccCCcchHHHHHHHHHHHHHHHHHHH
Q 030705           81 DRVDSGQFAFTAAEAGDYMACFWAVDHS--PQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEM  158 (173)
Q Consensus        81 ~~~~~g~f~f~~~~~G~y~iCf~n~~~~--~~~~~~V~f~~~~g~~~~d~~~~a~~~~l~~l~~~l~~l~~~l~~I~~~q  158 (173)
                      +..++|+|+|++..+|+|+||+.+..+.  .++..+|.+|+++|..+.+|+  ..+++++.++.+++.|.+++..|+.||
T Consensus        85 ~~ss~G~ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l~a--~~ke~~k~l~~Rv~~L~~~~~~IrkEQ  162 (215)
T KOG1690|consen   85 QYSSEGDFTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANLDA--QIKETDKLLEGRVRQLNSRLESIRKEQ  162 (215)
T ss_pred             cCCCCCceEEEccCCCceEEEEecccchhhccceEEEEEEEeeCchhhhhh--hhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998774  568899999999999998876  467888889999999999999999999


Q ss_pred             HHHHHHHHhhccC
Q 030705          159 FYLRERRNAGAEP  171 (173)
Q Consensus       159 ~y~r~re~~~r~~  171 (173)
                      +|+|+||+++|++
T Consensus       163 ~~~R~RE~~FR~t  175 (215)
T KOG1690|consen  163 NLQREREETFRDT  175 (215)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999987

>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-34  Score=210.61  Aligned_cols=158  Identities=20%  Similarity=0.389  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHhhcceeEEEEEeCCccceeeeeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccc
Q 030705            5 TLTLVLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVD   84 (173)
Q Consensus         5 ~~~~~~~l~ll~~~~~al~f~l~~~~~~Cf~e~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~   84 (173)
                      +..+++++++|+..+.++.+.+++++++||+|.+.+|+.+.++|+|.+++       .+++++.|.+|.|+.++..+..+
T Consensus         4 ~~~~~vll~~L~~~~~~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~gg-------~~~vd~~I~gP~~~~i~~~~~~s   76 (201)
T KOG1692|consen    4 LASVIVLLGLLFISAAGYGISLDAHEEECFFENLEEGDKLSVSFEVIDGG-------FLGVDVEITGPDGKIIHKGKRES   76 (201)
T ss_pred             hhhHHHHHHHHHHHhhheeEEEccchhhhHhhhhccCCEEEEEEEEecCC-------ccceeEEEECCCCchhhhccccc
Confidence            45566666665566999999999999999999999999999999999875       67999999999999999888888


Q ss_pred             cceEEEEeeccCceeEEEEecCCCCCceEEEEEEEeecccccCccchhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030705           85 SGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRER  164 (173)
Q Consensus        85 ~g~f~f~~~~~G~y~iCf~n~~~~~~~~~~V~f~~~~g~~~~d~~~~a~~~~l~~l~~~l~~l~~~l~~I~~~q~y~r~r  164 (173)
                      .|+|+|+++.+|.|++||+|..+. ..++.|.|++++|.-.. ++..++..+.++++..|++|...|.+++.||.|+..|
T Consensus        77 sgk~tF~a~~~G~Y~fCF~N~~s~-mtpk~V~F~ihvg~~~~-~~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~R  154 (201)
T KOG1692|consen   77 SGKYTFTAPKKGTYTFCFSNKMST-MTPKTVMFTIHVGHAPQ-RDDLAKDAHQNKLEEMIRELSEALTSVKHEQEYMEAR  154 (201)
T ss_pred             CceEEEEecCCceEEEEecCCCCC-CCceEEEEEEEEeeccc-cchhcccccccHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            999999999999999999999986 78999999999998654 4457889999999999999999999999999999999


Q ss_pred             HHhhccC
Q 030705          165 RNAGAEP  171 (173)
Q Consensus       165 e~~~r~~  171 (173)
                      |++||++
T Consensus       155 er~Hr~~  161 (201)
T KOG1692|consen  155 ERIHRNT  161 (201)
T ss_pred             HHHHHHh
Confidence            9999975

>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.2e-30  Score=192.00  Aligned_cols=155  Identities=19%  Similarity=0.324  Sum_probs=135.2

Q ss_pred             HHHHHHHhhcceeEEEEEeCCccceeeeeccCCcE-EEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccce
Q 030705            9 VLVIGILSSTSQSLRFEIQSAHTKCIAEDIKSNSM-TVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQ   87 (173)
Q Consensus         9 ~~~l~ll~~~~~al~f~l~~~~~~Cf~e~~~~~~~-v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~g~   87 (173)
                      +++|++++..+..++|+||.+.++|||+++++++. .+..|.|..||       +.+|++.|++|+|+++++..++..+.
T Consensus        11 ~~lla~~~s~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG-------~fDVD~~I~aPdgkvI~~~~kk~~~~   83 (209)
T KOG1693|consen   11 LLLLALLFSEASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGG-------HFDVDYDIEAPDGKVIYSEKKKRYDS   83 (209)
T ss_pred             HHHHHHHhhhcccEEEEcCCcchhheeeecccCCceEEEEEEEEeCC-------ceeeEEEEECCCCCEEeecccccccc
Confidence            44444555557899999999999999999999755 99999999886       78999999999999999999999999


Q ss_pred             EEEEeeccCceeEEEEecCCCCCceEEEEEEEeecccccCccch-hccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030705           88 FAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNV-AKKGSVDVMELELKKLYDTVSSIHQEMFYLRERRN  166 (173)
Q Consensus        88 f~f~~~~~G~y~iCf~n~~~~~~~~~~V~f~~~~g~~~~d~~~~-a~~~~l~~l~~~l~~l~~~l~~I~~~q~y~r~re~  166 (173)
                      |.|++...|+|.+||+|..+. +..+.|.++++.|.+..-..+. +++..++.|+..+..+..+|+.|.+.|.|+|.||+
T Consensus        84 ~~f~ae~~G~Y~fCFsN~fst-f~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~  162 (209)
T KOG1693|consen   84 FLFKAEGKGEYTFCFSNEFST-FSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREA  162 (209)
T ss_pred             EEEEEecceEEEEEecCcccc-ccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999987 8889999999999754322222 23457889999999999999999999999999999


Q ss_pred             hhccC
Q 030705          167 AGAEP  171 (173)
Q Consensus       167 ~~r~~  171 (173)
                      +.|.|
T Consensus       163 rn~~t  167 (209)
T KOG1693|consen  163 RNRST  167 (209)
T ss_pred             cCccc
Confidence            99976

>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins

Probab=99.95  E-value=3e-29  Score=186.84  Aligned_cols=145  Identities=30%  Similarity=0.504  Sum_probs=0.0

Q ss_pred             eEEEEEeCCccceeeeeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEe--CCCCCeEEeeeccc-cceEEEEeeccCc
Q 030705           21 SLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVT--SAYGNSYHYADRVD-SGQFAFTAAEAGD   97 (173)
Q Consensus        21 al~f~l~~~~~~Cf~e~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~--dp~g~~l~~~~~~~-~g~f~f~~~~~G~   97 (173)
                      |++|.|+||+++||++++++++.+.|+|.+.+++      .+..+.+.|+  +|+|+.+++..... +|+|+|++.++|.
T Consensus         1 a~~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~------~~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~   74 (183)
T PF01105_consen    1 ALTFELEPGETECFYEEVPKGTTIRGSYRVTDGG------GAYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGE   74 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEECCCCcEEEEEEcCCCcEEEEEEEEeecc------ccceEEEEEEecccCCceeeeecccccCCcEEEEeccCCC
Confidence            6899999999999999999999999999999774      1468999999  55668898875554 5799999999999


Q ss_pred             eeEEEEecCCCCCce-EEEEEEEeecccccCccchhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 030705           98 YMACFWAVDHSPQTT-VTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLRERRNAGAEPC  172 (173)
Q Consensus        98 y~iCf~n~~~~~~~~-~~V~f~~~~g~~~~d~~~~a~~~~l~~l~~~l~~l~~~l~~I~~~q~y~r~re~~~r~~~  172 (173)
                      |++||.|..+. ..+ +.|+|++++|.++.|+.+.++++++++++..|++|...++.|+++|+|++.||+++|++.
T Consensus        75 y~iCf~n~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~  149 (183)
T PF01105_consen   75 YQICFDNSSSS-FSPSKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQLN  149 (183)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             EEEEEEcCCCC-ccccEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999886 444 999999999987777788899999999999999999999999999999999999999863

It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.

>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=8e-25  Score=163.04  Aligned_cols=146  Identities=16%  Similarity=0.278  Sum_probs=126.2

Q ss_pred             ceeEEEEEeCCccceeeeeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccceEEEEeeccCce
Q 030705           19 SQSLRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDY   98 (173)
Q Consensus        19 ~~al~f~l~~~~~~Cf~e~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~g~f~f~~~~~G~y   98 (173)
                      ...++|+||||+++|||+.++.+..+..+|.|.+| +|     +.+|.+++.+|.|.++.+.+.+..|.+.+.+++.|.|
T Consensus        33 d~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G-~G-----Dl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY  106 (236)
T KOG3287|consen   33 DYDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDG-AG-----DLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDY  106 (236)
T ss_pred             ccceEEEecCCCceeeeeeccCCeEEEEEEEEEec-CC-----ccceeeEEeCCCccEEeecccccCceeEeeccCCcce
Confidence            45689999999999999999999999999999988 22     6899999999999999999999999999999999999


Q ss_pred             eEEEEecCCCCCceEEEEEEEee---cccc---cCccchhcc-----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030705           99 MACFWAVDHSPQTTVTIDFDWRT---GVQA---KDWSNVAKK-----GSVDVMELELKKLYDTVSSIHQEMFYLRERRNA  167 (173)
Q Consensus        99 ~iCf~n~~~~~~~~~~V~f~~~~---g~~~---~d~~~~a~~-----~~l~~l~~~l~~l~~~l~~I~~~q~y~r~re~~  167 (173)
                      ++||+|+.|. ++.+.|+|++-.   |+..   ..|..-++.     .+|+.++..+..++.++.....-|..+|.||+|
T Consensus       107 ~~CfDNsFS~-fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaR  185 (236)
T KOG3287|consen  107 QVCFDNSFST-FSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREAR  185 (236)
T ss_pred             EEEEcCcccc-ccceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999997 889999999932   3221   123222221     368899999999999999999999999999999


Q ss_pred             hccC
Q 030705          168 GAEP  171 (173)
Q Consensus       168 ~r~~  171 (173)
                      .|+.
T Consensus       186 Dr~L  189 (236)
T KOG3287|consen  186 DRNL  189 (236)
T ss_pred             hHHH
Confidence            9975

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=95.51  E-value=0.41  Score=31.69  Aligned_cols=66  Identities=15%  Similarity=0.144  Sum_probs=40.8

Q ss_pred             CCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeec---cccceEEEEee--c---cCceeEEEEec
Q 030705           40 SNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADR---VDSGQFAFTAA--E---AGDYMACFWAV  105 (173)
Q Consensus        40 ~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~---~~~g~f~f~~~--~---~G~y~iCf~n~  105 (173)
                      .|+.|.+.--+.+.+.....+.+..+.+.|+||+|+.+..+..   ...|.+++...  .   .|.|++=+...
T Consensus        13 PGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~   86 (99)
T PF01835_consen   13 PGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD   86 (99)
T ss_dssp             TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred             CCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence            4666766655444431123345679999999999999977654   23554444432  2   47787777764

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

>smart00557 IG_FLMN Filamin-type immunoglobulin domains

Probab=92.38  E-value=2.1  Score=28.10  Aligned_cols=45  Identities=24%  Similarity=0.333  Sum_probs=32.0

Q ss_pred             CceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEecC
Q 030705           62 SHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVD  106 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~  106 (173)
                      +..+.+.|.+|+|+.+--+ .+...|  ..+|++...|.|.+.+.-..
T Consensus        31 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g   78 (93)
T smart00557       31 GGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG   78 (93)
T ss_pred             CCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence            4689999999999654322 223334  56788888899988887654

These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=90.73  E-value=1.2  Score=29.84  Aligned_cols=23  Identities=22%  Similarity=0.525  Sum_probs=13.7

Q ss_pred             ccceEEEEeeccCceeE-EEEecC
Q 030705           84 DSGQFAFTAAEAGDYMA-CFWAVD  106 (173)
Q Consensus        84 ~~g~f~f~~~~~G~y~i-Cf~n~~  106 (173)
                      ....+.|++.+.|+|.+ |=.+..
T Consensus        74 ~~~~~~f~~~~~G~y~~~C~~~~~   97 (104)
T PF13473_consen   74 ETATVTFTPLKPGEYEFYCTMHPN   97 (104)
T ss_dssp             -EEEEEEEE-S-EEEEEB-SSS-T
T ss_pred             CEEEEEEcCCCCEEEEEEcCCCCc
Confidence            34578888899999987 865443

>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A

Probab=90.69  E-value=1.8  Score=27.72  Aligned_cols=43  Identities=16%  Similarity=0.243  Sum_probs=29.0

Q ss_pred             cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeec--cccceEEEEe
Q 030705           42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADR--VDSGQFAFTA   92 (173)
Q Consensus        42 ~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~--~~~g~f~f~~   92 (173)
                      ....+.|.+...        ...+.+.|+|.+|++|.+...  .+.|.+.|+-
T Consensus        12 ~~~~~~~~l~~~--------a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~W   56 (81)
T PF13860_consen   12 TKGSIEYTLPED--------ADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTW   56 (81)
T ss_dssp             CEEEEEEEECSS--------CEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE
T ss_pred             EEEEEEEeCCCc--------ccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEE
Confidence            577888888654        357999999999999986432  2345555543

>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.19  E-value=2  Score=26.53  Aligned_cols=61  Identities=18%  Similarity=0.187  Sum_probs=40.8

Q ss_pred             ceeeeeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccc-----cceEEEEeeccCceeEEE
Q 030705           32 KCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVD-----SGQFAFTAAEAGDYMACF  102 (173)
Q Consensus        32 ~Cf~e~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~-----~g~f~f~~~~~G~y~iCf  102 (173)
                      ..|.-+++++..+.+.  +...        ..+..+.+.+++|..+.......     .....|++...|.|.+=+
T Consensus         3 D~y~f~v~ag~~l~i~--l~~~--------~~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V   68 (70)
T PF04151_consen    3 DYYSFTVPAGGTLTID--LSGG--------SGDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV   68 (70)
T ss_dssp             EEEEEEESTTEEEEEE--ECET--------TSSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred             EEEEEEEcCCCEEEEE--EcCC--------CCCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence            3567778888777655  4333        22677889999988776533222     345778888889997744

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....

>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes

Probab=88.89  E-value=2  Score=29.01  Aligned_cols=45  Identities=11%  Similarity=0.150  Sum_probs=31.2

Q ss_pred             ceEEEEEeCCCCCeEEeeeccc--cceEEEEe--eccCceeEEEEecCC
Q 030705           63 HKLTVRVTSAYGNSYHYADRVD--SGQFAFTA--AEAGDYMACFWAVDH  107 (173)
Q Consensus        63 ~~v~v~I~dp~g~~l~~~~~~~--~g~f~f~~--~~~G~y~iCf~n~~~  107 (173)
                      ..+.++|+|..|+++|+.....  ....++..  ...|.|.+=+.+...
T Consensus        48 ~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g   96 (106)
T PF11589_consen   48 GDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG   96 (106)
T ss_dssp             SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred             CCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence            4799999999999999875433  33455555  457999999998865

The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.

>PF15417 DUF4624: Domain of unknown function (DUF4624)

Probab=86.78  E-value=8.2  Score=26.60  Aligned_cols=79  Identities=11%  Similarity=0.311  Sum_probs=46.8

Q ss_pred             CccceeeeeccC-CcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCC-CCeEEee--eccc-cceEEEEe---eccCceeE
Q 030705           29 AHTKCIAEDIKS-NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAY-GNSYHYA--DRVD-SGQFAFTA---AEAGDYMA  100 (173)
Q Consensus        29 ~~~~Cf~e~~~~-~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~-g~~l~~~--~~~~-~g~f~f~~---~~~G~y~i  100 (173)
                      +.-.|..+++.. +..++  |.+ +|.         .--|.|+|.. ..++|+.  .++- ...|+...   +...+|-+
T Consensus        37 ~rLFcVs~Die~L~aEv~--f~m-DGe---------~~iVEiKd~~~devLWsn~~~~~V~~dt~tisL~nlqk~kEY~V  104 (132)
T PF15417_consen   37 GRLFCVSEDIEALDAEVY--FQM-DGE---------SGIVEIKDRKTDEVLWSNTWNGKVSGDTFTISLNNLQKEKEYVV  104 (132)
T ss_pred             ceEEEEecchheeeeEEE--EEE-cCc---------cceEEeccCCccceeeccccccccccceEEEEhhhcccCceEEE
Confidence            356788888765 44443  333 443         4456788876 4577764  2222 33455544   45689999


Q ss_pred             EEEecCCCCCceEEEEEEEeec
Q 030705          101 CFWAVDHSPQTTVTIDFDWRTG  122 (173)
Q Consensus       101 Cf~n~~~~~~~~~~V~f~~~~g  122 (173)
                      ||....=   ..-.|.+.|+.+
T Consensus       105 ~ftGtkI---nhAvv~vtFeS~  123 (132)
T PF15417_consen  105 CFTGTKI---NHAVVKVTFESE  123 (132)
T ss_pred             EEeccEe---eeEEEEEEecch
Confidence            9998753   345556556443

>PRK06655 flgD flagellar basal body rod modification protein; Reviewed

Probab=83.75  E-value=6.6  Score=30.49  Aligned_cols=56  Identities=21%  Similarity=0.205  Sum_probs=39.4

Q ss_pred             cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeec--cccceEEEEe---------eccCceeEEEEec
Q 030705           42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADR--VDSGQFAFTA---------AEAGDYMACFWAV  105 (173)
Q Consensus        42 ~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~--~~~g~f~f~~---------~~~G~y~iCf~n~  105 (173)
                      ..+.+.|...+.        ...+.+.|+|..|++|++-.-  .+.|.+.|+-         -.+|.|.+=+...
T Consensus       113 ~~~~~~~~l~~~--------a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A~  179 (225)
T PRK06655        113 GTTPFGVELPSA--------ADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASAS  179 (225)
T ss_pred             CceEEEEEcCCC--------CcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEEE
Confidence            356666666543        347999999999999986433  3477777743         2369999988755

>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod

Probab=83.61  E-value=9.7  Score=24.84  Aligned_cols=45  Identities=20%  Similarity=0.265  Sum_probs=29.5

Q ss_pred             CceEEEEEeCCCCC----eE-Eeeeccccc--eEEEEeeccCceeEEEEecC
Q 030705           62 SHKLTVRVTSAYGN----SY-HYADRVDSG--QFAFTAAEAGDYMACFWAVD  106 (173)
Q Consensus        62 ~~~v~v~I~dp~g~----~l-~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  106 (173)
                      ...+.+.|.+|++.    .+ ..-.+...|  ..+|++...|.|.+++.-..
T Consensus        41 ~~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~g   92 (101)
T PF00630_consen   41 GDEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKING   92 (101)
T ss_dssp             SSEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEESS
T ss_pred             CceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEECC
Confidence            34788999999886    33 222223344  46777888888888777643

Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....

>PRK12812 flgD flagellar basal body rod modification protein; Reviewed

Probab=82.38  E-value=18  Score=28.73  Aligned_cols=57  Identities=14%  Similarity=0.138  Sum_probs=40.2

Q ss_pred             cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeee--ccccceEEEEeec---------cCceeEEEEecC
Q 030705           42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAAE---------AGDYMACFWAVD  106 (173)
Q Consensus        42 ~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~--~~~~g~f~f~~~~---------~G~y~iCf~n~~  106 (173)
                      ..+.+.|.+...        ...+.+.|+|..|++|+.-.  ....|.+.|+-..         .|.|.|=+....
T Consensus       128 ~~~~~~~~l~~~--------a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A~~  195 (259)
T PRK12812        128 ELIALKLYFPED--------SDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVYNN  195 (259)
T ss_pred             ceeEEEEecCCc--------CceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEEEc
Confidence            356666666443        34799999999999997653  3346777776644         699999887543

>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A

Probab=82.26  E-value=5.3  Score=25.02  Aligned_cols=43  Identities=23%  Similarity=0.289  Sum_probs=30.6

Q ss_pred             eEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEecC
Q 030705           64 KLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVD  106 (173)
Q Consensus        64 ~v~v~I~dp~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~  106 (173)
                      ++.|.+.+..+...........|+|.|.--..|.|.+=+....
T Consensus        16 ~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g   58 (82)
T PF13620_consen   16 GATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPG   58 (82)
T ss_dssp             T-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTT
T ss_pred             CEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECC
Confidence            7888899888887777677789999999767799999887654

>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains

Probab=81.57  E-value=3.9  Score=24.96  Aligned_cols=44  Identities=16%  Similarity=0.188  Sum_probs=35.8

Q ss_pred             eEEEEEeCCCCCeEEe--eeccccceEEEEeeccCceeEEEEecCC
Q 030705           64 KLTVRVTSAYGNSYHY--ADRVDSGQFAFTAAEAGDYMACFWAVDH  107 (173)
Q Consensus        64 ~v~v~I~dp~g~~l~~--~~~~~~g~f~f~~~~~G~y~iCf~n~~~  107 (173)
                      ++.|.|++.++..+..  ......|.+.|.--..|.|.+=......
T Consensus         3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~   48 (70)
T PF05738_consen    3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPD   48 (70)
T ss_dssp             TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTT
T ss_pred             CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCC
Confidence            5788899998887775  5556789999999999999998888544

The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....

>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=81.31  E-value=2.9  Score=31.18  Aligned_cols=56  Identities=11%  Similarity=0.156  Sum_probs=40.1

Q ss_pred             CceeEEEEecCCCCCceEEEEEEEeecccccCccchhccCCcchHHHHHHHHHHHHH
Q 030705           96 GDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVS  152 (173)
Q Consensus        96 G~y~iCf~n~~~~~~~~~~V~f~~~~g~~~~d~~~~a~~~~l~~l~~~l~~l~~~l~  152 (173)
                      -.-.+|+.|.++. ..--++.|+++....+.|.+++......+.++.+|+.+..++.
T Consensus        81 qklvlvI~~~~tg-EvlErWqFnie~~~~~~d~~na~~~k~~~~iq~EIraviRQIt  136 (203)
T KOG3285|consen   81 QKLVLVITSKHTG-EVLERWQFNIETENTASDGQNATRVKDLKRIQNEIRAVIRQIT  136 (203)
T ss_pred             ceEEEEEEecccc-cchhheeeeeeeeccccCcccccchhHHHHHHHHHHHHHHHHh
Confidence            3456799988875 5567889999988877776665566667777777776665554

>PRK12813 flgD flagellar basal body rod modification protein; Reviewed

Probab=81.00  E-value=9  Score=29.73  Aligned_cols=57  Identities=14%  Similarity=0.091  Sum_probs=38.8

Q ss_pred             CcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccc--eEEEEe-------eccCceeEEEEecC
Q 030705           41 NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSG--QFAFTA-------AEAGDYMACFWAVD  106 (173)
Q Consensus        41 ~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~g--~f~f~~-------~~~G~y~iCf~n~~  106 (173)
                      +..+.+.|.+.+.        ...+.+.|+|.+|++|+...- ..|  .|.+.-       -..|.|.|=+....
T Consensus       110 g~~~~~~~~l~~~--------a~~v~v~I~D~~G~vV~t~~~-~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A~~  175 (223)
T PRK12813        110 GTPVTISPNPAAD--------ADKAELVVRDAAGAEVARETV-PVGAGPVEWAGEDADGNPLPNGAYSFVVESYS  175 (223)
T ss_pred             CceeEEEEeccCC--------CceEEEEEEcCCCCEEEEEee-CCCceeEEeCCcCCCCCcCCCccEEEEEEEEe
Confidence            4466777777544        358999999999999976543 334  444441       22599999887663

>PHA03376 BARF1; Provisional

Probab=80.85  E-value=23  Score=27.07  Aligned_cols=96  Identities=9%  Similarity=0.115  Sum_probs=48.2

Q ss_pred             ChhhHHHHHHHHHHHhhcceeEEEEEeCC-ccceeeeeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEe
Q 030705            1 MIRLTLTLVLVIGILSSTSQSLRFEIQSA-HTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHY   79 (173)
Q Consensus         1 ~~~~~~~~~~~l~ll~~~~~al~f~l~~~-~~~Cf~e~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~   79 (173)
                      |.|.++++|++..++ ..+.++.-.+... .--|-+--......+.+...=..++       +..+.+.+-  .|++++.
T Consensus         1 ~~~~~~~Ll~La~l~-~sg~pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~-------~~~VvL~~~--ggdVv~~   70 (221)
T PHA03376          1 MARFIAQLLLLASCV-AAGQAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPG-------EEQVLIGRM--HHDVIFI   70 (221)
T ss_pred             ChhHHHHHHHHHHHh-ccCcchhheeCCcEEEEecccCccCCCceEEEEEecCCC-------CCCEEEEEc--CCeeeee
Confidence            678888888755554 4444555555443 2346666444445554443222221       223443332  1222221


Q ss_pred             eecccc---------ceEEEE-----eeccCceeEEEEecCC
Q 030705           80 ADRVDS---------GQFAFT-----AAEAGDYMACFWAVDH  107 (173)
Q Consensus        80 ~~~~~~---------g~f~f~-----~~~~G~y~iCf~n~~~  107 (173)
                      + .+-.         |+++..     +..+|.|.-+|.-...
T Consensus        71 Q-mEyRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~  111 (221)
T PHA03376         71 E-WPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGET  111 (221)
T ss_pred             e-eccccEEEEEecCCeEEEEEEeeeecCCceEEEEEEcCCC
Confidence            1 1122         444443     4568999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	95.86
2dj4_A	108	Filamin-B; beta-sandwich, immunoglobulin-like fold	92.16
3rgh_A	100	Filamin-A; cell adhesion, cytoskeleton-complex, di	91.79
1v05_A	96	Filamin C; actin-binding protein, immunoglobulin;	91.74
2d7n_A	93	Filamin-C; beta-sandwich, immunoglobulin-like fold	91.18
2bp3_A	97	Filamin A; structural protein, cytoskeleton/comple	90.88
2ee9_A	95	Filamin-B; beta-sandwich, immunoglobulin-like fold	90.81
4dzg_A	114	PLIG; lysozyme inhibitor, G-type lysozyme binding,	90.19
2w0p_A	94	Filamin-A; alternative splicing, cytoskeleton/comp	90.16
2d7p_A	112	Filamin-C; beta-sandwich, immunoglobulin-like fold	89.85
2nqc_A	138	Filamin-C; immunoglobulin, metal binding, immune s	89.68
2d7m_A	115	Filamin-C; beta-sandwich, immunoglobulin-like fold	89.57
2dic_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	88.84
2ee6_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	88.77
2dlg_A	102	Filamin-B; beta-sandwich, immunoglobulin-like fold	88.54
3cnk_A	89	Filamin-A; FLNA24, X-RAY crystalography, homodimer	88.46
2e9j_A	119	Filamin-B; beta-sandwich, immunoglobulin-like fold	88.46
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	88.39
3d33_A	108	Domain of unknown function with AN immunoglobulin	87.24
2dmb_A	124	Filamin-B; beta-sandwich, immunoglobulin-like fold	87.16
2p9r_A	102	Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac	87.12
2dmc_A	116	Filamin-B; beta-sandwich, immunoglobulin-like fold	86.71
3osv_A	138	Flagellar basal-BODY ROD modification protein FLG;	86.7
4g9s_B	111	Inhibitor of G-type lysozyme, goose-type lysozyme;	86.62
2eea_A	115	Filamin-B; beta-sandwich, immunoglobulin-like fold	85.49
3c12_A	138	FLGD, flagellar protein; HOOK capping, IG-like dom	84.44
2eec_A	125	Filamin-B; beta-sandwich, immunoglobulin-like fold	84.05
3c75_A	132	Amicyanin; copper proteins, electron transfer comp	83.17
2k9u_A	119	Gamma filamin; cytoskeletal complex, alternative s	82.63
2dia_A	113	Filamin-B; beta-sandwich, immunoglobulin-like fold	82.36
2k7p_A	188	Filamin-A; IG-like, ABP-280, actin binding protein	81.78
2di9_A	131	Filamin-B; beta-sandwich, immunoglobulin-like fold	80.57

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=95.86  E-value=0.11  Score=42.29  Aligned_cols=90  Identities=9%  Similarity=0.064  Sum_probs=60.5

Q ss_pred             EEEEeCCccceeeeecc-CCcEEEEEEEEEcCCCCCCCCCCceEEEEEe--C---CC---CC--eEEee--ecc--ccce
Q 030705           23 RFEIQSAHTKCIAEDIK-SNSMTVGKYNVVNPNDGHPLPESHKLTVRVT--S---AY---GN--SYHYA--DRV--DSGQ   87 (173)
Q Consensus        23 ~f~l~~~~~~Cf~e~~~-~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~--d---p~---g~--~l~~~--~~~--~~g~   87 (173)
                      .+.|++|+...+--.+. +|..+...|.+.+.          +|.+.|+  .   +.   |.  .+...  ...  .-..
T Consensus       281 ~~~V~~g~~~~v~~~v~~~g~~l~W~f~~~~~----------DI~F~v~~~~~~~~~~~~~~~~~v~p~~r~~~~~~~~~  350 (403)
T 1olm_A          281 SVQISRGSSHQVEYEILFPGCVLRWQFMSDGA----------DVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPED  350 (403)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEESSS----------CEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEE
T ss_pred             EEEEcCCCEEEEEEEEcCCCCEEEEEEEecCC----------cEEEEEEEecccccccCCCcceEEeeeeeecCcccccc
Confidence            48899999998888887 68899999988433          4555554  1   11   21  23211  111  1123


Q ss_pred             EEEEeeccCceeEEEEecCCCCCceEEEEEEEeecc
Q 030705           88 FAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGV  123 (173)
Q Consensus        88 f~f~~~~~G~y~iCf~n~~~~~~~~~~V~f~~~~g~  123 (173)
                      =+|+....|.|.++|.|+.|. ..+++|.+.+.+-.
T Consensus       351 G~~~~~~~G~y~l~fdNs~S~-~~~k~l~y~v~v~~  385 (403)
T 1olm_A          351 GTLTCSDPGIYVLRFDNTYSF-IHAKKVNFTVEVLL  385 (403)
T ss_dssp             EEEECCSCEEEEEEEECTTCC-CCSEEEEEEEEEEC
T ss_pred             CEEEcCCCeEEEEEEeccccc-eeceEEEEEEEEeC
Confidence            457799999999999999875 56788888887644

>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=92.16  E-value=1.1  Score=29.35  Aligned_cols=85  Identities=19%  Similarity=0.302  Sum_probs=49.5

Q ss_pred             EeCCccceeeeeccCCc--EEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeE
Q 030705           26 IQSAHTKCIAEDIKSNS--MTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMA  100 (173)
Q Consensus        26 l~~~~~~Cf~e~~~~~~--~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~-~~~~~g--~f~f~~~~~G~y~i  100 (173)
                      ++|...+|...-+..+.  ....+|.|...+++     +..+.+.|.+|.|..+.-. .+...|  ..+|++...|.|.+
T Consensus         9 ~d~sk~~v~G~Gl~~~v~~~~~~~F~V~~~~aG-----~~~l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i   83 (108)
T 2dj4_A            9 VDPSKVKIAGPGLGSGVRARVLQSFTVDSSKAG-----LAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMV   83 (108)
T ss_dssp             CCTTSCEEESTTTSSCCBTTSCEEEEEECTTTC-----SCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEE
T ss_pred             cccceeEEECCCcCcCccCCccEEEEEEECCCC-----CceEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCeeEEE
Confidence            45556666654444321  12235666654432     4578999999999654321 222334  46678888899999


Q ss_pred             EEEecCCC-CCceEEE
Q 030705          101 CFWAVDHS-PQTTVTI  115 (173)
Q Consensus       101 Cf~n~~~~-~~~~~~V  115 (173)
                      .+.-.... .+.+..|
T Consensus        84 ~V~~~g~~V~gSPF~v   99 (108)
T 2dj4_A           84 SVKYADEEIPRSPFKV   99 (108)
T ss_dssp             EEEESSSBCTTCSEEE
T ss_pred             EEEECCEECCCCCEEE
Confidence            88866543 3444433

>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0

Probab=91.79  E-value=0.6  Score=30.30  Aligned_cols=73  Identities=18%  Similarity=0.323  Sum_probs=42.1

Q ss_pred             eCCccceeeeeccC---CcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeE
Q 030705           27 QSAHTKCIAEDIKS---NSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMA  100 (173)
Q Consensus        27 ~~~~~~Cf~e~~~~---~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~-~~~~~g--~f~f~~~~~G~y~i  100 (173)
                      +|.+.+|...-+..   +..  .+|.|...+++     ...+.+.|.+|.|..+.-+ .+...|  ..+|+....|.|.+
T Consensus         7 d~skv~~~GpGL~~~~vg~~--~~F~V~~~~aG-----~~~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~p~~~G~y~i   79 (100)
T 3rgh_A            7 DASKVKCSGPGLERATAGEV--GQFQVDCSSAG-----SAELTIEICSEAGLPAEVYIQDHGDGTHTITYIPLCPGAYTV   79 (100)
T ss_dssp             CGGGCEEESGGGTEEETTSC--EEEEEECTTSC-----SCCEEEEEECTTSCBCEEEEEECSSSEEEEEEECCSSEEEEE
T ss_pred             ccccCEEECCCcCCeEcCCc--EEEEEEECCCC-----CceEEEEEECCCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEE
Confidence            44455555444432   233  24556655433     4578999999998644321 222334  46777888888888


Q ss_pred             EEEecC
Q 030705          101 CFWAVD  106 (173)
Q Consensus       101 Cf~n~~  106 (173)
                      .+.-..
T Consensus        80 ~V~~~g   85 (100)
T 3rgh_A           80 TIKYGG   85 (100)
T ss_dssp             EEEETT
T ss_pred             EEEECC
Confidence            776543

>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A

Probab=91.74  E-value=0.45  Score=30.50  Aligned_cols=76  Identities=14%  Similarity=0.203  Sum_probs=42.6

Q ss_pred             EeCCccceeeeeccCC-cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEE-eeeccccc--eEEEEeeccCceeEE
Q 030705           26 IQSAHTKCIAEDIKSN-SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYH-YADRVDSG--QFAFTAAEAGDYMAC  101 (173)
Q Consensus        26 l~~~~~~Cf~e~~~~~-~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~-~~~~~~~g--~f~f~~~~~G~y~iC  101 (173)
                      ++|...+|...-+... .....+|.|...+++     +..+.+.|.+|.|..+. .-.+...|  ..+|++...|.|.+.
T Consensus         4 ~d~~k~~~~G~Gl~~~~~g~~~~F~v~~~~aG-----~~~l~v~v~~p~~~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~   78 (96)
T 1v05_A            4 SDASKVVTRGPGLSQAFVGQKNSFTVDCSKAG-----TNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILI   78 (96)
T ss_dssp             BCGGGCEEESGGGTBCCTTSCEEEEEECTTSB-----SCCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEE
T ss_pred             CCchheEEECCCcCCEEcCCCEEEEEEEeCCC-----CCcEEEEEECCCCCeeEEEEEeCCCCEEEEEEEeCCCEEEEEE
Confidence            3444555554444432 112234556544432     45788899999985321 11222334  466788888888888


Q ss_pred             EEecC
Q 030705          102 FWAVD  106 (173)
Q Consensus       102 f~n~~  106 (173)
                      +.-..
T Consensus        79 V~~~g   83 (96)
T 1v05_A           79 VKWGD   83 (96)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            87554

>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=91.18  E-value=2  Score=27.57  Aligned_cols=55  Identities=13%  Similarity=0.056  Sum_probs=37.2

Q ss_pred             CceEEEEEeCCCCCeEEe-eecccc--ceEEEEeeccCceeEEEEecCCC-CCceEEEE
Q 030705           62 SHKLTVRVTSAYGNSYHY-ADRVDS--GQFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~~-~~~~~~--g~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V~  116 (173)
                      ...+.+.|.+|+|..+.- -.+...  -..+|++.+.|.|.+++.-.... .+.+..|.
T Consensus        21 ~~~l~v~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~g~~I~GSPF~v~   79 (93)
T 2d7n_A           21 KGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFY   79 (93)
T ss_dssp             SSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSSCCTTCSEEEE
T ss_pred             CCCEEEEEECCCCCccceEEEECCCCEEEEEEEccCCEEEEEEEEECCEeCCCCCeEEE
Confidence            457899999999985421 112223  46788999999999999876654 34554433

>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A

Probab=90.88  E-value=1.1  Score=28.60  Aligned_cols=65  Identities=14%  Similarity=0.256  Sum_probs=39.9

Q ss_pred             EEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEecCCC-CCceEEEE
Q 030705           46 GKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (173)
Q Consensus        46 ~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V~  116 (173)
                      .+|.|...+++     ...+.+.|.+|.+..+.-. +...|  ..+|++...|.|.+.+.-.... .+.+..|.
T Consensus        25 ~~F~v~t~dag-----~~~l~v~v~~p~~~~~~v~-d~~dGty~v~Y~p~~~G~y~i~V~~~g~~I~gSPF~v~   92 (97)
T 2bp3_A           25 ATFTVNTKDAG-----EGGLSLAIEGPSKAEISCT-DNQDGTCSVSYLPVLPGDYSILVKYNEQHVPGSPFTAR   92 (97)
T ss_dssp             EEEEEECTTCC-----SEEEEEEEEESSCCEEEEE-ECSSSEEEEEEECSSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             EEEEEEECCCC-----CCcEEEEEECCCCCEEEEE-ECCCCEEEEEEEeCCCCcEEEEEEECCEECCCcCEEEE
Confidence            34556555432     4578889999988654322 22334  5778888899999988765432 24444433

>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.81  E-value=0.96  Score=29.25  Aligned_cols=52  Identities=12%  Similarity=0.089  Sum_probs=35.5

Q ss_pred             CceEEEEEeCCCCCeEEee-ecccc--ceEEEEeeccCceeEEEEecCCC-CCceE
Q 030705           62 SHKLTVRVTSAYGNSYHYA-DRVDS--GQFAFTAAEAGDYMACFWAVDHS-PQTTV  113 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~~~-~~~~~--g~f~f~~~~~G~y~iCf~n~~~~-~~~~~  113 (173)
                      ...+.+.|.+|+|..+--. .+...  -..+|++.+.|.|.+++.-.... .+.+.
T Consensus        29 ~~~ltv~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~G~~I~GSPF   84 (95)
T 2ee9_A           29 KGEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGSHIPESPL   84 (95)
T ss_dssp             TTSEEEEEECTTSCEECCEEEECSSSCEEEECCCCSSEEEEEEEEESSCBCTTCSE
T ss_pred             CCCEEEEEECCCCCccccEEEeCCCCeEEEEEEecCCEeEEEEEEECCEECCCCCe
Confidence            4589999999999754211 12223  45778889999999999876543 34453

>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}

Probab=90.19  E-value=0.36  Score=32.40  Aligned_cols=71  Identities=10%  Similarity=0.054  Sum_probs=49.8

Q ss_pred             EEeCCccceeeeeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCe---EEeeeccccceEEEEeeccCceeEE
Q 030705           25 EIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNS---YHYADRVDSGQFAFTAAEAGDYMAC  101 (173)
Q Consensus        25 ~l~~~~~~Cf~e~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~---l~~~~~~~~g~f~f~~~~~G~y~iC  101 (173)
                      .|.+++...+.-.+.++..+.+..   +.        +..+.+.|.+|.|+.   ++..+....+.|+-+...+|.|.+=
T Consensus        23 ~I~g~~~~~Y~~~a~aGQ~l~V~l---s~--------~~~~~f~I~~P~~~~~~~l~~g~~~~~~~~~g~LP~sG~Y~i~   91 (114)
T 4dzg_A           23 SFTGYDTIHYTLVAXAGQTMTVXI---GG--------SSNANFNVFAPGAQPGQAEAIGRNDGDGQWQGALPASGXYLIQ   91 (114)
T ss_dssp             CCBTTCCEEEECCC-CCCEEEC-C---EE--------STTCEEEEECTTCCTTTSCCSEECCTTSCCEEECSSCC-CEEE
T ss_pred             EecCCCceEEEEEecCCCEEEEEe---CC--------CCcEEEEEECCCCCcccceeccccCCcceEEEEecCCCcEEEE
Confidence            567778888888899998887774   22        235778899999873   3433323345888899999999998


Q ss_pred             EEecC
Q 030705          102 FWAVD  106 (173)
Q Consensus       102 f~n~~  106 (173)
                      +....
T Consensus        92 V~~~r   96 (114)
T 4dzg_A           92 VYQMR   96 (114)
T ss_dssp             EECCH
T ss_pred             EEecc
Confidence            88763

>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A

Probab=90.16  E-value=2.4  Score=26.92  Aligned_cols=43  Identities=19%  Similarity=0.292  Sum_probs=29.7

Q ss_pred             ceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEecC
Q 030705           63 HKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVD  106 (173)
Q Consensus        63 ~~v~v~I~dp~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  106 (173)
                      ..+.+.|.+|.+..+.-. +...|  ..+|++...|.|.+.+.-..
T Consensus        34 ~~~~v~v~gp~~~~~~v~-d~~dGty~v~Y~p~~~G~y~I~V~~~g   78 (94)
T 2w0p_A           34 GGLAIAVEGPSKAEISFE-DRKDGSCGVAYVVQEPGDYEVSVKFNE   78 (94)
T ss_dssp             CCEEEEEEESSCCEEEEE-ECTTSCEEEEEECSSCEEEEEEEEETT
T ss_pred             CcEEEEEECCCCCeEEEE-ECCCCEEEEEEEECCCceEEEEEEECC
Confidence            467888889988654322 22334  56788888899999888654

>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A

Probab=89.85  E-value=2.4  Score=28.01  Aligned_cols=63  Identities=14%  Similarity=0.121  Sum_probs=40.5

Q ss_pred             EEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEee-eccc--cceEEEEeeccCceeEEEEecCCC-CCceEE
Q 030705           46 GKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA-DRVD--SGQFAFTAAEAGDYMACFWAVDHS-PQTTVT  114 (173)
Q Consensus        46 ~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~-~~~~--~g~f~f~~~~~G~y~iCf~n~~~~-~~~~~~  114 (173)
                      .+|.|...++      +-.+.+.|.+|.|..+--. .+..  .-..+|++.+.|.|.+.+.-.... .+.+..
T Consensus        30 ~~F~V~~~~a------~g~l~v~V~~P~g~~~~~~v~d~~~gty~v~ytP~~~G~h~v~V~~~g~~I~GSPF~   96 (112)
T 2d7p_A           30 ASFAVQLNGA------RGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFK   96 (112)
T ss_dssp             EEEEEECTTC------CSCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSCBCTTCSEE
T ss_pred             EEEEEEeCCC------CCCEEEEEECCCCCeeeeEEEeCCCCeEEEEEEcCCCEeEEEEEEECCeEcCCCCEE
Confidence            3555665442      3478999999999754221 1222  346788999999999988866543 345533

>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A {Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A

Probab=89.68  E-value=3.7  Score=28.30  Aligned_cols=66  Identities=14%  Similarity=0.197  Sum_probs=41.0

Q ss_pred             EEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEecC-CC-CCceEEEE
Q 030705           46 GKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVD-HS-PQTTVTID  116 (173)
Q Consensus        46 ~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~-~~-~~~~~~V~  116 (173)
                      .+|.|...+++     ...+.+.|.+|++..+--.+....=..+|++...|.|.+.+.-.. .. .+.+..|.
T Consensus        64 ~~F~V~t~daG-----~g~l~v~I~gPs~~~~~~~d~~dGy~V~YtP~~~G~y~I~Vk~~g~~hI~GSPF~v~  131 (138)
T 2nqc_A           64 SEFIVNTLNAG-----SGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAK  131 (138)
T ss_dssp             EEEEEECTTSC-----SCCEEEEEESSSCCEEEEEEETTEEEEEEECCSCEEEEEEEEESSSCBCTTCSEEEE
T ss_pred             eEEEEEEcCCC-----CCcEEEEEECCCCCeeeEEECCCcEEEEEEcCCCEEEEEEEEECCcccCCCCCeEEE
Confidence            45667655432     457899999999875432222111467788888999998777655 32 34454443

>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=89.57  E-value=3.2  Score=27.39  Aligned_cols=85  Identities=12%  Similarity=0.214  Sum_probs=48.6

Q ss_pred             eCCccceeeeeccCCc---EEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEe-eeccccc--eEEEEeeccCceeE
Q 030705           27 QSAHTKCIAEDIKSNS---MTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHY-ADRVDSG--QFAFTAAEAGDYMA  100 (173)
Q Consensus        27 ~~~~~~Cf~e~~~~~~---~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~-~~~~~~g--~f~f~~~~~G~y~i  100 (173)
                      +|..-+|...-+....   ....+|.|...+++     ...+.+.|.+|.|..+.- -.+...|  ..+|++...|.|.+
T Consensus        10 d~~k~~~~G~Gl~~~~v~~~~~~~F~V~~~daG-----~~~l~V~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i   84 (115)
T 2d7m_A           10 DASKVRASGPGLNASGIPASLPVEFTIDARDAG-----EGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTI   84 (115)
T ss_dssp             CGGGEEEESSTTCSSCEESSSCEEEEEEESSSC-----SSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEE
T ss_pred             CcceeEEECCCccccccccCCcEEEEEEECCCC-----CCEEEEEEECCCCCeeeeEEEECCCCEEEEEEEeCCCceEEE
Confidence            4444455544443311   11235556544432     457899999999874422 1222344  56688889999999


Q ss_pred             EEEecCCC-CCceEEEE
Q 030705          101 CFWAVDHS-PQTTVTID  116 (173)
Q Consensus       101 Cf~n~~~~-~~~~~~V~  116 (173)
                      .+.-.... ...+..|.
T Consensus        85 ~V~~~g~~I~gSPF~v~  101 (115)
T 2d7m_A           85 TIKYGGDEIPYSPFRIH  101 (115)
T ss_dssp             EEEESSCBCTTCSEEEE
T ss_pred             EEEECCEECCCCCEEEE
Confidence            88876543 34554443

>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=88.84  E-value=3.4  Score=26.80  Aligned_cols=54  Identities=19%  Similarity=0.233  Sum_probs=35.3

Q ss_pred             EEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEecC
Q 030705           47 KYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVD  106 (173)
Q Consensus        47 ~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  106 (173)
                      +|.+...+++     ...+.+.|.+|.+..+.-.+ ...|  ..+|+....|.|.+.+.-..
T Consensus        31 ~F~v~t~dag-----~g~l~v~v~gp~~~~~~v~d-~~dGty~v~Y~p~~~G~y~I~V~~~g   86 (105)
T 2dic_A           31 VFTVVTRGAG-----IGGLGITVEGPSESKINCRD-NKDGSCSAEYIPFAPGDYDVNITYGG   86 (105)
T ss_dssp             EEEEECTTTC-----SSCEEEEEESSSCCCCEEEE-CSSSCEEEEECCSSCEEEEEEEEETT
T ss_pred             EEEEEEccCC-----CCceEEEEECCCCCeEEEEE-CCCCeEEEEEEeCCCeEEEEEEEECC
Confidence            4556554432     34688889999876443222 2334  56788888999999888654

>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.77  E-value=3.4  Score=26.75  Aligned_cols=64  Identities=17%  Similarity=0.330  Sum_probs=40.8

Q ss_pred             EEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEecCCC-CCceEEE
Q 030705           46 GKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTI  115 (173)
Q Consensus        46 ~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V  115 (173)
                      .+|.|...+++     ...+.+.|.+|.+..+ .-.+...|  ..+|++...|.|.+++.-.... .+.+..|
T Consensus        30 ~~F~v~t~dag-----~~~l~v~v~~p~~~~v-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v   96 (105)
T 2ee6_A           30 AEFSIWTREAG-----AGGLSIAVEGPSKAEI-TFDDHKNGSCGVSYIAQEPGNYEVSIKFNDEHIPESPYLV   96 (105)
T ss_dssp             EEECEECSSSC-----CCCEEEEEESSSCEEE-EECCCCSSCCCEEEEESSCEEEEEEEEETTEECTTCSEEE
T ss_pred             EEEEEEECCCC-----CCcEEEEEECCCCCEE-EEEECCCCEEEEEEEECCCceEEEEEEECCEECCCcCEEE
Confidence            34556544432     4578889999998655 22333444  6788899999999988865432 3445443

>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=88.54  E-value=1.6  Score=28.51  Aligned_cols=53  Identities=15%  Similarity=0.110  Sum_probs=36.1

Q ss_pred             CceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEecCCC-CCceEE
Q 030705           62 SHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVT  114 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~~-~~~~~~  114 (173)
                      ...+.+.|.+|+|..+--. .+...|  ..+|++.+.|.|.+.+.-.... .+.+..
T Consensus        30 ~~~l~v~v~~P~G~~~~~~v~d~~dGty~v~ytP~e~G~h~v~V~~~g~~I~GSPF~   86 (102)
T 2dlg_A           30 SSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHTVSVKYRGQHVTGSPFQ   86 (102)
T ss_dssp             GGGCEEEEECTTSCEEECEEEECSSSEEEEEBCCCTTCEEEEEEESSSSBCSSCSEE
T ss_pred             CCCEEEEEECCCCCEeeeEEEECCCCEEEEEEEecCCEeEEEEEEECCEeCCCCCeE
Confidence            4578999999999865321 222333  5678899999999998866543 345533

>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}

Probab=88.46  E-value=3.2  Score=25.95  Aligned_cols=45  Identities=16%  Similarity=0.156  Sum_probs=29.3

Q ss_pred             CceEEEEEeCCCCCeEE-eeeccccc--eEEEEeeccCceeEEEEecC
Q 030705           62 SHKLTVRVTSAYGNSYH-YADRVDSG--QFAFTAAEAGDYMACFWAVD  106 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~-~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  106 (173)
                      +..+.+.|.+|.|..+. .-.+...|  ..+|++...|.|.+.+.-..
T Consensus        29 ~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   76 (89)
T 3cnk_A           29 NNMLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWGH   76 (89)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEEEETTEEEEEEECCSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCceeEEEEECCCCEEEEEEEECCCccEEEEEEECC
Confidence            45788889999986321 11122233  56678888899988887654

>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.46  E-value=1.1  Score=29.98  Aligned_cols=85  Identities=14%  Similarity=0.213  Sum_probs=48.1

Q ss_pred             eCCccceeeeeccCC-c--EEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEe-eeccccc--eEEEEeeccCceeE
Q 030705           27 QSAHTKCIAEDIKSN-S--MTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHY-ADRVDSG--QFAFTAAEAGDYMA  100 (173)
Q Consensus        27 ~~~~~~Cf~e~~~~~-~--~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~-~~~~~~g--~f~f~~~~~G~y~i  100 (173)
                      ++...+|...-+... .  -...+|.|...+++     ...+.+.|.+|.|..+.- -.+...|  ..+|+....|.|.+
T Consensus        20 d~~~~~~~G~Gl~~~~v~~g~~~~F~V~~~daG-----~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i   94 (119)
T 2e9j_A           20 DASKVTASGPGLSSYGVPASLPVDFAIDARDAG-----EGLLAVQITDQEGKPKRAIVHDNKDGTYAVTYIPDKTGRYMI   94 (119)
T ss_dssp             CGGGEEEESGGGCSSCEETTSCEEEEEEESSCC-----CCCEECCEECTTCCCCCEEEEECCSSEEEEEECCCSCSEEEE
T ss_pred             CcceeEEECCCcccCceecCCcEEEEEEECCCC-----CCeEEEEEECCCCCEEEEEEEECCCCEEEEEEEeCCCEEEEE
Confidence            454555555444322 1  12235556544432     457889999999864321 1222344  56788888999999


Q ss_pred             EEEecCCC-CCceEEEE
Q 030705          101 CFWAVDHS-PQTTVTID  116 (173)
Q Consensus       101 Cf~n~~~~-~~~~~~V~  116 (173)
                      .+.-.... .+.+..|.
T Consensus        95 ~V~~~g~~V~gSPF~v~  111 (119)
T 2e9j_A           95 GVTYGGDDIPLSPYRIR  111 (119)
T ss_dssp             CCEESSCBCTTCSEEEE
T ss_pred             EEEECCEECCCCCEEEE
Confidence            88765433 34454443

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=88.39  E-value=2.2  Score=34.03  Aligned_cols=100  Identities=13%  Similarity=0.132  Sum_probs=62.5

Q ss_pred             hhhHHHHHHHHHH-HhhcceeEEEEEeCCccceeeeeccC-CcE--EEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeE
Q 030705            2 IRLTLTLVLVIGI-LSSTSQSLRFEIQSAHTKCIAEDIKS-NSM--TVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSY   77 (173)
Q Consensus         2 ~~~~~~~~~~l~l-l~~~~~al~f~l~~~~~~Cf~e~~~~-~~~--v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l   77 (173)
                      ++|+++++..+-= .......+.-...|...+|+.--+.. +..  -..+|.|-..++|     ...+.|.|.+|+|..+
T Consensus       227 eksimtYvs~~~~~~~~~~~~l~~k~~pskv~a~GpGle~~g~~vg~p~~F~Vdt~~AG-----~g~l~v~V~~P~G~~~  301 (347)
T 4b7l_A          227 EHSVMTYLSQFPKAKLKPGAPLKPKLNPKKARAYGRGIEPTGNMVKQPAKFTVDTISAG-----QGDVMVFVEDPEGNKE  301 (347)
T ss_dssp             HHHHHHHHTTGGGCCCCTTCCCCCSCCGGGCEEESGGGSSSCCCTTSCEEEEEECTTTC-----SCCEEEEEECTTSCEE
T ss_pred             hhHHHHHHHHHhhhccCccccccccccccceeEEeccccccCceeCCEEEEEEEeCCCC-----CCceEEEEECCCCCee
Confidence            3566666655431 12344455556777788888887754 211  1346667655443     4579999999999854


Q ss_pred             E---eeeccccc--eEEEEeeccCceeEEEEecC
Q 030705           78 H---YADRVDSG--QFAFTAAEAGDYMACFWAVD  106 (173)
Q Consensus        78 ~---~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  106 (173)
                      -   ...+...|  ..+|++.+.|.|.+-+.-..
T Consensus       302 ~~~v~~~~~~~gty~v~y~P~~~G~~~I~V~~~g  335 (347)
T 4b7l_A          302 EAQVTPDSDKNKTYSVEYLPKVTGLHKVTVLFAG  335 (347)
T ss_dssp             ECEEEESSTTCSEEEEEECCCSSSEEEEEEEETT
T ss_pred             cCEEEEEcCCCCEEEEEEEECCCEeEEEEEEECC
Confidence            3   22223344  46788999999998777654

>3d33_A Domain of unknown function with AN immunoglobulin beta-sandwich fold; structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482}

Probab=87.24  E-value=2.6  Score=27.86  Aligned_cols=56  Identities=18%  Similarity=0.140  Sum_probs=39.9

Q ss_pred             CcEEEEEEEEEcCCCCCCCCCCceEEEEEe-CCCCCeEEeeecccc--ceEEEEee--ccCceeEEEEecC
Q 030705           41 NSMTVGKYNVVNPNDGHPLPESHKLTVRVT-SAYGNSYHYADRVDS--GQFAFTAA--EAGDYMACFWAVD  106 (173)
Q Consensus        41 ~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~-dp~g~~l~~~~~~~~--g~f~f~~~--~~G~y~iCf~n~~  106 (173)
                      +..+.++|...          ...+.++|+ |..|++||+..-...  ..+++...  .+|.|.+=+.+..
T Consensus        37 ~~~L~I~F~~~----------~~~vtItI~~~~tG~iVY~~~v~~~~~~~~~I~L~~~~~G~Y~L~i~~~~   97 (108)
T 3d33_A           37 GYLLTLKNASP----------DRDMTIRITDMAKGGVVYENDIPEVQSAYITISIANFPAEEYKLEITGTP   97 (108)
T ss_dssp             TTEEEEEESSC----------CSEEEEEEEETTTCCEEEEEEECGGGTTEEEEECTTSCSEEEEEEEEEES
T ss_pred             CCEEEEEECCc----------CCCEEEEEEECCCCcEEEEEeecCCCCcEEEEEcCCccCceEEEEEEeCC
Confidence            45666676222          358999999 899999998754333  35566654  5799999998883

>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=87.16  E-value=5.1  Score=26.90  Aligned_cols=65  Identities=22%  Similarity=0.283  Sum_probs=40.8

Q ss_pred             EEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEecCCC-CCceEEEE
Q 030705           47 KYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (173)
Q Consensus        47 ~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V~  116 (173)
                      .|.|...+++     ...+.+.|.+|.|..+.-+ .+...|  ...|++...|.|.+++.-.... .+.+..|.
T Consensus        32 ~F~V~a~daG-----~~~l~V~I~~p~g~~v~~~v~d~~dGty~V~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~  100 (124)
T 2dmb_A           32 GFVVDAKTAG-----KGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGVDIPNSPFTVM  100 (124)
T ss_dssp             EEEEECSSSC-----SCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSCBCTTCSEEEE
T ss_pred             EEEEEEecCC-----CCcEEEEEECCCCCEEeeEEEeCCCCEEEEEEEcCCCEEEEEEEEECCEECCCCCeEEE
Confidence            4556544432     4578999999998644221 122334  5678899999999998876543 34454443

>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}

Probab=87.12  E-value=4.2  Score=25.95  Aligned_cols=64  Identities=14%  Similarity=0.084  Sum_probs=39.3

Q ss_pred             CCcEEEEEEEEEcCCCCCCCCC-CceEEEEEeCCCCCeEEeeecc--ccceE--EEEee---ccCceeEEEEecC
Q 030705           40 SNSMTVGKYNVVNPNDGHPLPE-SHKLTVRVTSAYGNSYHYADRV--DSGQF--AFTAA---EAGDYMACFWAVD  106 (173)
Q Consensus        40 ~~~~v~~~y~v~~~~~~~~~~~-~~~v~v~I~dp~g~~l~~~~~~--~~g~f--~f~~~---~~G~y~iCf~n~~  106 (173)
                      .|+.|.+..-+.+.+.   .|. +..+.+.|.||+|+.+.++...  ..|.+  +|...   ..|.|++......
T Consensus        15 PGetV~~~~~~~~~~~---~p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~~   86 (102)
T 2p9r_A           15 PGQTVKFRVVSMDENF---HPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKS   86 (102)
T ss_dssp             TTCEEEEEEEEECGGG---CBCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTT
T ss_pred             CCCEEEEEEEEECCCC---cCCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEECC
Confidence            4667766655554431   232 3347899999999998764322  34544  33332   3599999888643

>2dmc_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=86.71  E-value=1.4  Score=29.44  Aligned_cols=54  Identities=15%  Similarity=0.177  Sum_probs=36.2

Q ss_pred             CceEEEEEeCCCCCeEEe---eeccccceEEEEeeccCceeEEEEecCCC-CCceEEE
Q 030705           62 SHKLTVRVTSAYGNSYHY---ADRVDSGQFAFTAAEAGDYMACFWAVDHS-PQTTVTI  115 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~~---~~~~~~g~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V  115 (173)
                      ...+.+.|.+|+|..+--   ....-.-..+|+..+.|.|.+.+.-.... .+.+..|
T Consensus        44 ~~~l~v~v~~PsG~~~~~~v~~~~~g~y~v~ftP~e~G~h~v~V~~~g~~I~GSPF~v  101 (116)
T 2dmc_A           44 LSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGNHVANSPVSI  101 (116)
T ss_dssp             STTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBBSSSBCTTCSEEE
T ss_pred             CCCEEEEEECCCCCEEeeEEEeCCCCeEEEEEEeCCCeeEEEEEEECCEECCCCCeEE
Confidence            457888999999974321   12222346789999999999988876543 3555443

>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}

Probab=86.70  E-value=3.5  Score=28.25  Aligned_cols=57  Identities=16%  Similarity=0.110  Sum_probs=39.5

Q ss_pred             cEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeee--ccccceEEEEee---------ccCceeEEEEecC
Q 030705           42 SMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAA---------EAGDYMACFWAVD  106 (173)
Q Consensus        42 ~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~--~~~~g~f~f~~~---------~~G~y~iCf~n~~  106 (173)
                      ..+.+.|.+...        ...+.+.|+|.+|++|.+-.  ..+.|.+.|+-.         .+|.|.+-+....
T Consensus        24 ~~~~~~~~l~~~--------a~~v~v~I~d~~G~~V~t~~~g~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~v~a~~   91 (138)
T 3osv_A           24 DTFKASLNLPVS--------SSNVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQTSI   91 (138)
T ss_dssp             SCEEEEEEESBC--------EEEEEEEEECTTSCEEEEEEEEEECSEEEEEEECSBCTTSCBCCSEEEEEEEEEEE
T ss_pred             CeEEEEEECCCC--------CcEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCccEEEEEEEEc
Confidence            346777777543        34899999999999998643  234565555442         2588999887664

>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A

Probab=86.62  E-value=3.7  Score=26.97  Aligned_cols=73  Identities=8%  Similarity=-0.072  Sum_probs=50.6

Q ss_pred             EEEEEeCCccceeeeeccCCcEEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEee---eccccceEEEEeeccCce
Q 030705           22 LRFEIQSAHTKCIAEDIKSNSMTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA---DRVDSGQFAFTAAEAGDY   98 (173)
Q Consensus        22 l~f~l~~~~~~Cf~e~~~~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~---~~~~~g~f~f~~~~~G~y   98 (173)
                      +.=.|.+++...+.-.+.+|..++++  +...          ...+.|..|.+......   ......+++.+...+|.|
T Consensus        18 v~G~I~g~~~~~Y~~~a~aGQ~l~v~--l~s~----------~~~~~i~~pg~~~~~~~~~~~~~~~~~~~~~LP~sG~Y   85 (111)
T 4g9s_B           18 YSGEIKGYDYDTYTFYAKKGQKVHVS--ISNE----------GADTYLFGPGIDDSVDLSRYSPELDSHGQYSLPASGKY   85 (111)
T ss_dssp             EEEEEETTCCEEEEEEECTTCEEEEE--ESCT----------TCEEEEECTTCSSCEECSTTCTTCCTTSCEECSSSEEE
T ss_pred             EEEEEeCCCceEEEEEecCCCEEEEE--EecC----------CccEEEECCCCccccccccccccCCceEEEEecCCccE
Confidence            34478888889999999999988876  3322          24456888876543322   122345688899999999


Q ss_pred             eEEEEecC
Q 030705           99 MACFWAVD  106 (173)
Q Consensus        99 ~iCf~n~~  106 (173)
                      .+=+....
T Consensus        86 ~I~V~~~r   93 (111)
T 4g9s_B           86 ELRVLQTR   93 (111)
T ss_dssp             EEEEECCH
T ss_pred             EEEEEecc
Confidence            99887543

>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction with GP1BA, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.49  E-value=5.9  Score=26.04  Aligned_cols=65  Identities=15%  Similarity=0.267  Sum_probs=41.4

Q ss_pred             EEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEecCCC-CCceEEEE
Q 030705           46 GKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (173)
Q Consensus        46 ~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V~  116 (173)
                      .+|.|...+++     ...+.+.|.+|.+..+. -.+...|  ..+|++...|.|.+.+.-.... .+.+..|.
T Consensus        40 ~~F~v~t~dag-----~~~l~v~v~~p~~~~~~-v~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~  107 (115)
T 2eea_A           40 ATFTIVTEDAG-----EGGLDLAIEGPSKAEIS-CIDNKDGTCTVTYLPTLPGDYSILVKYNDKHIPGSPFTAK  107 (115)
T ss_dssp             EEEEEECSSCC-----SSCEEEEEESSSCCEEC-CBCCSSSEEEEEEECSSCSCEEEEEEESSSBCTTCSEEEE
T ss_pred             EEEEEEcccCC-----CCceEEEEECCCCceEE-EEECCCCEEEEEEEeCCCeeEEEEEEECCEECCCCCEEEE
Confidence            34556655432     45788999999985442 2333445  5788888999999988865432 34554443

>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}

Probab=84.44  E-value=6.8  Score=26.72  Aligned_cols=54  Identities=17%  Similarity=0.179  Sum_probs=37.6

Q ss_pred             EEEEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeee--ccccceEEEEee---------ccCceeEEEEec
Q 030705           43 MTVGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYAD--RVDSGQFAFTAA---------EAGDYMACFWAV  105 (173)
Q Consensus        43 ~v~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~--~~~~g~f~f~~~---------~~G~y~iCf~n~  105 (173)
                      ...+.|+ ...        ...+.+.|+|..|++|.+-.  ..+.|.+.|+-.         .+|.|.+.+...
T Consensus        28 ~~~~~~~-~~~--------a~~v~v~I~d~~G~~V~t~~~~~~~aG~~~~~WDg~d~~G~~~~~G~Y~~~v~a~   92 (138)
T 3c12_A           28 SAKGVVA-ATS--------AGFVNFEITDANGTFVKQLSVPASAAGEVSFAWDGTDANGNRMAAGKYGITATQT   92 (138)
T ss_dssp             CEEEEEE-ESS--------SEEEEEEEECSSCCEEEEEEEEESSSEEEEEEECSBCTTSCBCCSEEEEEEEEEE
T ss_pred             eEEEEEe-cCC--------CCEEEEEEEeCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCceEEEEEEEE
Confidence            3456666 432        35899999999999998644  244566666542         258999999866

>2eec_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.05  E-value=7.6  Score=26.09  Aligned_cols=65  Identities=9%  Similarity=0.174  Sum_probs=40.9

Q ss_pred             EEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeecccc-ceEEEEeeccCceeEEEEecC-CC-CCceEEEE
Q 030705           46 GKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDS-GQFAFTAAEAGDYMACFWAVD-HS-PQTTVTID  116 (173)
Q Consensus        46 ~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~-g~f~f~~~~~G~y~iCf~n~~-~~-~~~~~~V~  116 (173)
                      ..|.+...+++     ...+.+.|.+|.+..+--.+. .. =..+|++...|.|.+.+.-.. .. .+.+..|.
T Consensus        40 ~~F~v~t~daG-----~~~l~v~i~gp~~~~~~~~d~-~dGy~V~Y~P~~~G~y~I~V~~~g~~hI~gSPF~v~  107 (125)
T 2eec_A           40 SEFFINTTRAG-----PGTLSVTIEGPSKVKMDCQET-PEGYKVMYTPMAPGNYLISVKYGGPNHIVGSPFKAK  107 (125)
T ss_dssp             EEEEEECTTTC-----SCCEEEEEESSSCCCCEEEEC-SSSEEEEECCSSCEEEEEEEEESSSCBCTTCSEEEE
T ss_pred             EEEEEEEcCCC-----CCcEEEEEECCCCCcceeEEC-CCCEEEEEEcCCCeEEEEEEEECCcccCCCCCeEEE
Confidence            34667665543     457899999998864422221 22 366788888999999887665 32 34554444

>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=83.17  E-value=3.7  Score=27.83  Aligned_cols=18  Identities=39%  Similarity=0.606  Sum_probs=12.3

Q ss_pred             cceEEEEeeccCceeE-EE
Q 030705           85 SGQFAFTAAEAGDYMA-CF  102 (173)
Q Consensus        85 ~g~f~f~~~~~G~y~i-Cf  102 (173)
                      ...++++..+.|.|.+ |-
T Consensus       102 G~t~~~tF~~~G~y~y~C~  120 (132)
T 3c75_A          102 DQAYAITFNEAGSYDYFCT  120 (132)
T ss_dssp             TEEEEEEECSCEEEEEECS
T ss_pred             CCEEEEEcCCCEEEEEEeC
Confidence            3456666678899977 74

>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}

Probab=82.63  E-value=8.3  Score=25.49  Aligned_cols=65  Identities=15%  Similarity=0.322  Sum_probs=42.3

Q ss_pred             EEEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEecCCC-CCceEEE
Q 030705           45 VGKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTI  115 (173)
Q Consensus        45 ~~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V  115 (173)
                      ..+|.+...+++     ...+.+.|.+|.+-.+. -.+...|  ..+|++...|.|.+.+.-.... .+.+..|
T Consensus        36 ~~~F~v~t~dag-----~~~l~v~v~~p~~~~~~-v~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v  103 (119)
T 2k9u_A           36 PAEFSIWTREAG-----AGGLSIAVEGPSKAEIA-FEDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPDSPFVV  103 (119)
T ss_dssp             EEEEEEECCSSC-----SEEEEEEEESSSCCEEE-EECCSSSEEEEEEECCSSEEEEEEEEETSCBCSSCSEEE
T ss_pred             eEEEEEEECCCC-----CCcEEEEEeCCCCCeEE-EEECCCCEEEEEEEECCCceEEEEEEECCEECCCCCEEE
Confidence            345666655432     56889999999884432 2233344  5788889999999998866543 3455444

>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=82.36  E-value=6.7  Score=25.64  Aligned_cols=55  Identities=15%  Similarity=0.191  Sum_probs=35.3

Q ss_pred             CceEEEEEeCCCCCeEEe-eeccccc--eEEEEeeccCceeEEEEecCCC-CCceEEEE
Q 030705           62 SHKLTVRVTSAYGNSYHY-ADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~~-~~~~~~g--~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V~  116 (173)
                      ...+.+.|.+|.|..+.- -.+...|  ..+|+....|.|.+.+.-.... .+.+..|.
T Consensus        41 ~~~l~v~i~~~~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~V~gSPf~v~   99 (113)
T 2dia_A           41 PGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGGELVPHFPARVK   99 (113)
T ss_dssp             SCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             CccEEEEEECCCCCEeeEEEEECCCCEEEEEEEeCCCccEEEEEEECCEECCCCCEEEE
Confidence            457888899888764422 1233344  5678888899999988865432 34454444

>2k7p_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}

Probab=81.78  E-value=12  Score=26.80  Aligned_cols=55  Identities=13%  Similarity=0.234  Sum_probs=37.6

Q ss_pred             EEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEecC
Q 030705           46 GKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVD  106 (173)
Q Consensus        46 ~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  106 (173)
                      ..|.|...+++     ...+.+.|.+|.+..+.- .+...|  ..+|++...|.|.+++.-..
T Consensus       116 ~~F~V~t~dag-----~g~l~v~I~gp~~~~~~~-~d~~dGty~v~Y~p~~~G~y~i~V~~~g  172 (188)
T 2k7p_A          116 ATFTVNTKDAG-----EGGLSLAIEGPSKAEISC-TDNQDGTCSVSYLPVLPGDYSILVKYNE  172 (188)
T ss_dssp             EEEEEECTTCC-----SSCEEEEEECSSCCEEEE-EECTTSEEEEEEECCSSEEEEEEEEETT
T ss_pred             EEEEEEeCCCC-----CCCeEEEEeCCCCCeEEE-EECCCCEEEEEEEeCCCEEEEEEEEECC
Confidence            35556655432     346888899998865532 233445  68888999999999998654

>2di9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=80.57  E-value=11  Score=25.43  Aligned_cols=65  Identities=12%  Similarity=0.302  Sum_probs=40.7

Q ss_pred             EEEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEecCCC-CCceEEEE
Q 030705           46 GKYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (173)
Q Consensus        46 ~~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V~  116 (173)
                      ..|.+...+++     ...+.+.|.+|.+..+.-. +...|  ..+|++...|.|.+.+.-.... .+.+..|.
T Consensus        50 ~~F~V~t~dag-----~~~l~v~v~gp~~~~~~v~-d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~  117 (131)
T 2di9_A           50 AEFTIDTKGAG-----TGGLGLTVEGPCEAKIECS-DNGDGTCSVSYLPTKPGEYFVNILFEEVHIPGSPFKAD  117 (131)
T ss_dssp             EEEEEECTTTC-----SSCEEEEECSSSCCEEEEE-ECSSSEEEEEEECSSSSEEEEEEEESSCBCTTCSEEEE
T ss_pred             EEEEEEEcCCC-----CCeeEEEEEecCCceEEEE-ECCCCEEEEEEEeCCCeeEEEEEEECCEECCCcCEEEE
Confidence            34556554432     4578888999988644222 22334  5678888999999988865543 34554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d1olma2	119	Supernatant protein factor (SPF), C-terminal domai	97.57
d2d7ma1	102	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	94.94
d2di8a1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	93.74
d2dmba1	111	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	93.66
d2w0pa1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	92.6
d2bp3a1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	92.41
d2d7pa1	99	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	92.08
d2nqca1	97	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	91.44
d2dica1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	91.41
d2dj4a1	101	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	91.3
d1v05a_	96	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	90.81
d2di9a1	118	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	90.67
d2diaa1	100	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	88.15
d2d7na1	80	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	86.3
d2j3sa2	88	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	85.49
d1qfha1	104	F-actin cross-linking gelation factor (ABP-120) re	84.03
d1pmya_	123	Pseudoazurin {Methylobacterium extorquens, strain	83.74
d1qfha2	108	F-actin cross-linking gelation factor (ABP-120) re	82.0
d2dmca1	103	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	81.7
d2diba1	115	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	81.18

>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Supernatant protein factor (SPF), C-terminal domain
superfamily: Supernatant protein factor (SPF), C-terminal domain
family: Supernatant protein factor (SPF), C-terminal domain
domain: Supernatant protein factor (SPF), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.0011  Score=43.60  Aligned_cols=91  Identities=9%  Similarity=0.070  Sum_probs=59.0

Q ss_pred             EEEEeCCccceeeeecc-CCcEEEEEEEEEcCCCCCCCCCCceEEEEEe--CCCC------C--eEEee--ecccc--ce
Q 030705           23 RFEIQSAHTKCIAEDIK-SNSMTVGKYNVVNPNDGHPLPESHKLTVRVT--SAYG------N--SYHYA--DRVDS--GQ   87 (173)
Q Consensus        23 ~f~l~~~~~~Cf~e~~~-~~~~v~~~y~v~~~~~~~~~~~~~~v~v~I~--dp~g------~--~l~~~--~~~~~--g~   87 (173)
                      ++.|.+|+....--.+. +|+.+...|.+.+.          +|.+.|.  ...|      .  .+...  .+...  -.
T Consensus         7 tvtV~~G~~~~v~~~v~~~Gs~l~WeF~t~~~----------DI~Fgv~~~~~~~~~~~~~~~~~v~p~~r~~s~~~p~~   76 (119)
T d1olma2           7 SVQISRGSSHQVEYEILFPGCVLRWQFMSDGA----------DVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPED   76 (119)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEESSS----------CEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEE
T ss_pred             EEEECCCCEEEEEEEEeCCCcEEEEEEEeCCc----------cEEEEEEEecccCCccccCceEEEeeeEEecCCceeEc
Confidence            46788888877777775 57899888877432          4555554  1111      1  23221  11111  12


Q ss_pred             EEEEeeccCceeEEEEecCCCCCceEEEEEEEeeccc
Q 030705           88 FAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQ  124 (173)
Q Consensus        88 f~f~~~~~G~y~iCf~n~~~~~~~~~~V~f~~~~g~~  124 (173)
                      =+|.+...|.|.+||+|+.|. ...+.|.+.+++-..
T Consensus        77 g~~~~~~~G~Y~l~FDNs~S~-~~sK~l~Y~i~v~~P  112 (119)
T d1olma2          77 GTLTCSDPGIYVLRFDNTYSF-IHAKKVNFTVEVLLP  112 (119)
T ss_dssp             EEEECCSCEEEEEEEECTTCC-CCSEEEEEEEEEECC
T ss_pred             cEEEcCCCEEEEEEEeCCcce-EEeeEEEEEEEEECC
Confidence            346778999999999999886 788999999987543

>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.1  Score=32.61  Aligned_cols=54  Identities=17%  Similarity=0.228  Sum_probs=36.5

Q ss_pred             CceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEecCCC-CCceEEE
Q 030705           62 SHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTI  115 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V  115 (173)
                      ...+.+.|.+|+|+.+--. .+...|  ..+|++...|.|.+.+...... .+.+..|
T Consensus        36 ~g~l~v~i~~p~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g~~I~gSPF~v   93 (102)
T d2d7ma1          36 EGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRI   93 (102)
T ss_dssp             SSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSCBCTTCSEEE
T ss_pred             CCcEEEEEEeCCCCEeeeEEEeCCCcEEEEEEEECCCEeEEEEEEECCEECCCCCEEE
Confidence            3478999999999854221 222335  4699999999999998765443 3455443

>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.37  Score=29.59  Aligned_cols=64  Identities=16%  Similarity=0.299  Sum_probs=40.7

Q ss_pred             EEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEecCCC-CCceEEEE
Q 030705           47 KYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (173)
Q Consensus        47 ~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V~  116 (173)
                      +|.|...+++     .-.+.+.|.+|.+..+.-.+ ...|  ..+|++...|.|.+.+.-.... .+.+.+|.
T Consensus        24 ~F~V~~~~aG-----~g~l~v~i~gp~~~~v~v~~-~~dg~y~v~y~P~~~G~y~i~V~~~g~~I~gSPF~v~   90 (98)
T d2di8a1          24 DFIVDTRDAG-----YGGISLAVEGPSKVDIQTED-LEDGTCKVSYFPTVPGVYIVSTKFADEHVPGSPFTVK   90 (98)
T ss_dssp             EEEEECTTTC-----BCCEEEEEESSSCCCEECCB-CTTSCEEEEECCCSCSEEEEEEEESSCBCTTCSEEEE
T ss_pred             EEEEEeCCCC-----CCceEEEEEeCCCceEEEEE-CCCCEEEEEEEECCCceEEEEEEECCEECCCCCEEEE
Confidence            4556544432     34788999999887653222 2334  4678999999999988766543 34554443

>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.34  Score=30.50  Aligned_cols=55  Identities=22%  Similarity=0.286  Sum_probs=37.8

Q ss_pred             CceEEEEEeCCCCCeEEe-eeccccc--eEEEEeeccCceeEEEEecCCC-CCceEEEE
Q 030705           62 SHKLTVRVTSAYGNSYHY-ADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~~-~~~~~~g--~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V~  116 (173)
                      ...+.+.|.+|.|+.+-- -.+...|  ..+|++++.|.|.+.+...... .+.+..|.
T Consensus        35 ~g~l~v~v~~p~g~~~~~~v~d~~~G~y~v~f~P~~~G~h~i~V~~~g~~I~gSPf~v~   93 (111)
T d2dmba1          35 KGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGVDIPNSPFTVM   93 (111)
T ss_dssp             SCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSCBCTTCSEEEE
T ss_pred             CCcEEEEEEECCCCEEEeEEEECCCCEEEEEEEECCCCCEEEEEEECCEECCCCCEEEE
Confidence            347899999999986532 2223345  5788999999999988876543 34554443

>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.60  E-value=0.4  Score=29.13  Aligned_cols=54  Identities=19%  Similarity=0.350  Sum_probs=36.1

Q ss_pred             CceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEecCCC-CCceEEEE
Q 030705           62 SHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V~  116 (173)
                      ...+.+.|.+|++..+.-.+ ...|  ..+|++...|.|.+.+.-.... .+.+.+|.
T Consensus        32 ~g~l~v~v~gp~~~~v~v~d-~~dg~y~v~ytP~~~G~y~i~V~~~g~~I~gSPF~v~   88 (92)
T d2w0pa1          32 AGGLAIAVEGPSKAEISFED-RKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVP   88 (92)
T ss_dssp             SCCEEEEEEESSCCEEEEEE-CTTSCEEEEEECSSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             CCceEEEEEeCCceEEEEEE-CCCCEEEEEEEECCCceEEEEEEECCEECCCCCeEEE
Confidence            34788889999987664332 3345  4689999999999988765432 24444443

>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.41  E-value=0.62  Score=28.11  Aligned_cols=44  Identities=14%  Similarity=0.213  Sum_probs=31.6

Q ss_pred             CceEEEEEeCCCCCeEEeeeccccce--EEEEeeccCceeEEEEecC
Q 030705           62 SHKLTVRVTSAYGNSYHYADRVDSGQ--FAFTAAEAGDYMACFWAVD  106 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~~~~~~~~g~--f~f~~~~~G~y~iCf~n~~  106 (173)
                      ...+.+.|.+|.+..+.-.+ ...|.  .+|++.+.|.|.+-+.-..
T Consensus        33 ~g~l~v~v~~p~~~~~~v~~-~~dg~y~v~ytP~~~G~h~i~V~~~g   78 (92)
T d2bp3a1          33 EGGLSLAIEGPSKAEISCTD-NQDGTCSVSYLPVLPGDYSILVKYNE   78 (92)
T ss_dssp             SEEEEEEEEESSCCEEEEEE-CSSSEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCceEEEEEeCCCceEEEEE-CCCCEEEEEEEECCCccEEEEEEECC
Confidence            45789999999987654333 23454  5699999999998665543

>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.08  E-value=0.59  Score=28.68  Aligned_cols=53  Identities=19%  Similarity=0.171  Sum_probs=35.8

Q ss_pred             ceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEecCCC-CCceEEE
Q 030705           63 HKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTI  115 (173)
Q Consensus        63 ~~v~v~I~dp~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V  115 (173)
                      -.+.+.|.+|.|..+--. .+...|  ..+|++...|.|.+.+...... .+.+.+|
T Consensus        34 g~l~v~v~~p~g~~v~~~v~~~~dg~y~v~y~P~~~G~~~i~V~~~g~~I~gSPf~v   90 (99)
T d2d7pa1          34 GVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKI   90 (99)
T ss_dssp             SCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSCBCTTCSEEE
T ss_pred             CeEEEEEEcCCCCEeeeEEEeCCCCEEEEEEEECCCCcEEEEEEECCEECCCCCEEE
Confidence            468999999999865322 222344  4569999999999988876543 3455443

>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.44  E-value=0.86  Score=27.70  Aligned_cols=55  Identities=11%  Similarity=0.145  Sum_probs=37.1

Q ss_pred             CceEEEEEeCCCCCeEEeeeccccceEEEEeeccCceeEEEEecC-C-CCCceEEEE
Q 030705           62 SHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVD-H-SPQTTVTID  116 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~-~-~~~~~~~V~  116 (173)
                      ...+.+.|.+|.|..+--......-..+|++...|.|.+.+.-.. . -.+.+.+|.
T Consensus        34 ~~~l~v~v~~p~~~~~~~~~~~~~y~v~y~P~~~G~h~i~V~~~g~~~I~gSPF~v~   90 (97)
T d2nqca1          34 SGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAK   90 (97)
T ss_dssp             SCCEEEEEESSSCCEEEEEEETTEEEEEEECCSCEEEEEEEEESSSCBCTTCSEEEE
T ss_pred             CCceEEEEEcCCCceEEEEECCCcEEEEEEeCCCEeEEEEEEECCccccCCcCEEEE
Confidence            347889999999976643333333468999999999999886543 2 235564443

>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.41  E-value=0.78  Score=27.93  Aligned_cols=54  Identities=15%  Similarity=0.187  Sum_probs=35.2

Q ss_pred             CceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEecCCC-CCceEEEE
Q 030705           62 SHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V~  116 (173)
                      ...+.+.|.+|.+..+--.+ ...|  ..+|++.+.|.|.+.+.-.... .+.+.+|.
T Consensus        34 ~g~l~v~v~~p~~~~~~v~~-~~dg~y~v~y~P~~~G~y~i~V~~~g~~I~gSPF~v~   90 (98)
T d2dica1          34 IGGLGITVEGPSESKINCRD-NKDGSCSAEYIPFAPGDYDVNITYGGAHIPGSPFRVP   90 (98)
T ss_dssp             SSCEEEEEESSSCCCCEEEE-CSSSCEEEEECCSSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             CCCcEEEEEeCCCcEEEEEE-CCCCEEEEEEEECCCceEEEEEEECCEECCCCCEEEE
Confidence            34788899999887543222 2333  4679999999999988765432 34554443

>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.30  E-value=0.92  Score=27.76  Aligned_cols=63  Identities=22%  Similarity=0.338  Sum_probs=39.8

Q ss_pred             EEEEEcCCCCCCCCCCceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEecCCC-CCceEE
Q 030705           47 KYNVVNPNDGHPLPESHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVT  114 (173)
Q Consensus        47 ~y~v~~~~~~~~~~~~~~v~v~I~dp~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~~-~~~~~~  114 (173)
                      +|.|...+++     ...+.+.|.+|+|..+--+ .+...|  ..+|++...|.|.+-+.-.... .+.+..
T Consensus        25 ~F~Vd~~~aG-----~g~l~v~i~~p~g~~~~~~v~~~~dG~y~v~y~P~~~G~y~i~V~~~g~~I~gSPF~   91 (101)
T d2dj4a1          25 SFTVDSSKAG-----LAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYADEEIPRSPFK   91 (101)
T ss_dssp             EEEEECTTTC-----SCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESSSBCTTCSEE
T ss_pred             EEEEEeCCCC-----CCCEEEEEEECCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECCEECCCCCEE
Confidence            4555544432     4478999999999865322 222344  5688889999999977665432 345544

>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=0.69  Score=28.06  Aligned_cols=44  Identities=20%  Similarity=0.290  Sum_probs=31.4

Q ss_pred             ceEEEEEeCCCCCeEE-eeeccccc--eEEEEeeccCceeEEEEecC
Q 030705           63 HKLTVRVTSAYGNSYH-YADRVDSG--QFAFTAAEAGDYMACFWAVD  106 (173)
Q Consensus        63 ~~v~v~I~dp~g~~l~-~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  106 (173)
                      ..+.+.|.+|+|..+- .-.+...|  ..+|+.+..|.|++.+....
T Consensus        37 g~l~v~v~~p~g~~v~~~v~~~~~g~y~v~y~P~~~G~~~v~V~~~g   83 (96)
T d1v05a_          37 NMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGD   83 (96)
T ss_dssp             CCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETT
T ss_pred             CceEEEEEECCCCeeeeEEEECCCCEEEEEEEeCCCccEEEEEEECC
Confidence            4688999999987542 22223334  56889999999999887654

>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.67  E-value=1.2  Score=27.95  Aligned_cols=55  Identities=13%  Similarity=0.251  Sum_probs=37.1

Q ss_pred             CceEEEEEeCCCCCeEEeeecc-ccceEEEEeeccCceeEEEEecCCC-CCceEEEE
Q 030705           62 SHKLTVRVTSAYGNSYHYADRV-DSGQFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~~~~~~-~~g~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V~  116 (173)
                      ...+.+.|.+|.+..+.-.+.. -.-..+|++...|.|.+.+.-.... .+.+.+|.
T Consensus        54 ~g~l~v~i~~p~~~~~~v~~~~dG~y~v~ytP~~~G~y~i~V~~~g~~i~gSPf~v~  110 (118)
T d2di9a1          54 TGGLGLTVEGPCEAKIECSDNGDGTCSVSYLPTKPGEYFVNILFEEVHIPGSPFKAD  110 (118)
T ss_dssp             SSCEEEEECSSSCCEEEEEECSSSEEEEEEECSSSSEEEEEEEESSCBCTTCSEEEE
T ss_pred             CCccEEEEecCCceEEEEEECCCCEEEEEEEeCCcEeEEEEEEECCEECCCCCEEEE
Confidence            3478899999998765332221 1345789999999999988876543 34554443

>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.15  E-value=1  Score=27.36  Aligned_cols=53  Identities=13%  Similarity=0.109  Sum_probs=35.3

Q ss_pred             CceEEEEEeCCCCCeEEe-eecccc--ceEEEEeeccCceeEEEEecCCC-CCceEE
Q 030705           62 SHKLTVRVTSAYGNSYHY-ADRVDS--GQFAFTAAEAGDYMACFWAVDHS-PQTTVT  114 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~~-~~~~~~--g~f~f~~~~~G~y~iCf~n~~~~-~~~~~~  114 (173)
                      ...+.+.|.+|.|..+-. -.+...  -..+|+..+.|.|.+.+.-.... .+.+..
T Consensus        34 ~~~l~v~i~~~~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g~~V~gSPf~   90 (100)
T d2diaa1          34 PGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGGELVPHFPAR   90 (100)
T ss_dssp             SCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETTEECTTCSEE
T ss_pred             CCcEEEEEEeCCCCEeeEEEEECCCCEEEEEEEeCcCccEEEEEEECCEECCCCCEE
Confidence            347889999999875422 222333  46789999999999998865432 234444

>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.30  E-value=2  Score=25.10  Aligned_cols=55  Identities=15%  Similarity=0.126  Sum_probs=36.1

Q ss_pred             CceEEEEEeCCCCCeEEee-eccccc--eEEEEeeccCceeEEEEecCCC-CCceEEEE
Q 030705           62 SHKLTVRVTSAYGNSYHYA-DRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTID  116 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V~  116 (173)
                      .-.+.+.|++|+|..+-.. .+...|  ..+|+..+.|.|.+=+...... .+.+..|.
T Consensus        14 ~g~l~~~v~~P~G~~~~~~v~~~~dg~y~v~y~P~~~G~h~v~V~~~g~~I~gSPf~v~   72 (80)
T d2d7na1          14 KGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFY   72 (80)
T ss_dssp             SSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSSCCTTCSEEEE
T ss_pred             CCcEEEEEECCCCCEeceEEEECCCCEEEEEEEECCcEEEEEEEEECCEECCCCCEEEE
Confidence            4479999999999865321 122334  6788999999999966555432 34555444

>d2j3sa2 b.1.18.10 (A:2149-2236) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.49  E-value=0.55  Score=28.17  Aligned_cols=44  Identities=20%  Similarity=0.200  Sum_probs=29.5

Q ss_pred             ceEEEEEeCCCCCeEEee-eccccce--EEEEeeccCceeEEEEecC
Q 030705           63 HKLTVRVTSAYGNSYHYA-DRVDSGQ--FAFTAAEAGDYMACFWAVD  106 (173)
Q Consensus        63 ~~v~v~I~dp~g~~l~~~-~~~~~g~--f~f~~~~~G~y~iCf~n~~  106 (173)
                      .++.+.|.+|.|+.+-.. .....|.  .+|+....|.|.+-+....
T Consensus        24 g~l~v~v~~P~g~~~~~~v~~~~~g~y~v~y~P~~~G~h~i~V~~~g   70 (88)
T d2j3sa2          24 QDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKG   70 (88)
T ss_dssp             CCEEEEEECTTCCEEEEBC-------CCCBCCCCSCEEEEEEEEETT
T ss_pred             CcEEEEEECCCCCEEeeEEEECCCCEEEEEEEECCceeEEEEEEECC
Confidence            479999999999876432 2223454  5689999999998777654

>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=84.03  E-value=2.3  Score=25.76  Aligned_cols=45  Identities=13%  Similarity=0.186  Sum_probs=30.8

Q ss_pred             CceEEEEEeCCCCCeEEee-eccccce--EEEEeeccCceeEEEEecC
Q 030705           62 SHKLTVRVTSAYGNSYHYA-DRVDSGQ--FAFTAAEAGDYMACFWAVD  106 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~~~-~~~~~g~--f~f~~~~~G~y~iCf~n~~  106 (173)
                      +..+.+.|.+|+|..+--. .+...|.  .+|++...|.|.+-+.-..
T Consensus        43 g~~~~v~v~~p~g~~~~~~v~d~~dGtY~v~y~p~~~G~~~i~V~~~g   90 (104)
T d1qfha1          43 GDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRG   90 (104)
T ss_dssp             CCCEEEEEECGGGCEECCEEEECSSSEEEEEECCCSSEEEEEEEEETT
T ss_pred             CceeEEEEECCCCCEEeeEEEECCCCEEEEEEEeCCCEeEEEEEEECC
Confidence            4478999999998765321 2223444  4788888899988776553

>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Pseudoazurin
species: Methylobacterium extorquens, strain am1 [TaxId: 408]

Probab=83.74  E-value=1.7  Score=27.62  Aligned_cols=61  Identities=10%  Similarity=0.078  Sum_probs=39.2

Q ss_pred             cceEEEEeeccCceeE-EEEecCCCCCceEEEEEEEeecccccCccchhccCCcchHHHHHHHHHHHH
Q 030705           85 SGQFAFTAAEAGDYMA-CFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTV  151 (173)
Q Consensus        85 ~g~f~f~~~~~G~y~i-Cf~n~~~~~~~~~~V~f~~~~g~~~~d~~~~a~~~~l~~l~~~l~~l~~~l  151 (173)
                      ...|+++....|.|.+ |-  .|...+-.-    .+.+|....+.+.++........+.+|++|..++
T Consensus        61 ~~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G----~I~Vgd~~~n~~~~~~~~~~~~~~~~~~~~~~~~  122 (123)
T d1pmya_          61 GQEAVVKFDKEGVYGFKCA--PHYMMGMVA----LVVVGDKRDNLEAAKSVQHNKLTQKRLDPLFAQI  122 (123)
T ss_dssp             TSCEEEECCSCEEEEEECS--TTTTTTCEE----EEEESSCCTTHHHHHTCCCCHHHHHHHHHHHHTT
T ss_pred             ccccccccCCCceEEEEec--cCCCCCCEE----EEEECCCCCCHHHHHhhccchhhHHHHHHHHHHc
Confidence            4578888899999987 93  343211111    2345666555666666777777788777776654

>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=82.00  E-value=3.9  Score=25.11  Aligned_cols=54  Identities=13%  Similarity=0.090  Sum_probs=33.9

Q ss_pred             CceEEEEEeCCCCCeEEeeeccccc--eEEEEeeccCceeEEEEecCCC-CCceEEE
Q 030705           62 SHKLTVRVTSAYGNSYHYADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTI  115 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V  115 (173)
                      ...+.+.|.+|.+.+-..-.+...|  ..+|++...|.|.+.+.-.... .+.+.+|
T Consensus        30 ~~~~~v~i~gp~~~~~~~v~d~~dGty~v~y~p~~~G~y~v~V~~~g~~I~gSPF~v   86 (108)
T d1qfha2          30 GDKFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGKHIEGSPFKQ   86 (108)
T ss_dssp             CCCEEEEEEECCSEEEEEEEECSSSEEEEEEEEESSEEEEEEEEETTEECBTCSEEE
T ss_pred             CCeEEEEEECCCcccccEEEECCCCEEEEEEEECcceeEEEEEEECCEECCCCCEEE
Confidence            4578889999987643222223333  5678889999999977755432 3445433

>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.70  E-value=1.5  Score=26.67  Aligned_cols=54  Identities=17%  Similarity=0.282  Sum_probs=33.2

Q ss_pred             CceEEEEEeCCCCCeEE-eeeccccc--eEEEEeeccCceeEEEEecCCC-CCceEEE
Q 030705           62 SHKLTVRVTSAYGNSYH-YADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTI  115 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~-~~~~~~~g--~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V  115 (173)
                      ...+.+.|.+|.|..+- .-.+...|  ..+|+..+.|.|.+=+.-.... .+.+.+|
T Consensus        37 ~g~l~v~v~~P~g~~v~~~v~~~~dg~y~v~f~P~~~G~h~i~V~~~g~~i~gSPf~v   94 (103)
T d2dmca1          37 LSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGNHVANSPVSI   94 (103)
T ss_dssp             STTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBBSSSBCTTCSEEE
T ss_pred             CCcEEEEEECCCCCEeccEEEECCCCEEEEEEEeCCceeEEEEEEECCEECCCCCEEE
Confidence            34788899999998552 11222334  4579999999998855443322 3455443

>d2diba1 b.1.18.10 (A:8-122) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.18  E-value=2  Score=26.75  Aligned_cols=54  Identities=17%  Similarity=0.233  Sum_probs=35.8

Q ss_pred             CceEEEEEeCCCCCeEEe-eeccccc--eEEEEeeccCceeEEEEecCCC-CCceEEE
Q 030705           62 SHKLTVRVTSAYGNSYHY-ADRVDSG--QFAFTAAEAGDYMACFWAVDHS-PQTTVTI  115 (173)
Q Consensus        62 ~~~v~v~I~dp~g~~l~~-~~~~~~g--~f~f~~~~~G~y~iCf~n~~~~-~~~~~~V  115 (173)
                      ...+.+.|.+|+|..+-- -.+...|  ..+|++...|.|++.+.-.... .+.+.+|
T Consensus        49 ~~~l~v~v~~p~g~~v~~~v~~~~dG~y~v~y~P~~~G~~~i~V~~~g~~I~gSPf~v  106 (115)
T d2diba1          49 GDHIKAHIANPSGASTECFVTDNADGTYQVEYTPFEKGLHVVEVTYDDVPIPNSPFKV  106 (115)
T ss_dssp             CSCCCEECCCSSSCCCCCEEEECSSSEEEEEECCSSCSEEEEEEBSSSCBCTTCSEEE
T ss_pred             CccEEEEEEeCCCCEeeeEEEECCCCEEEEEEEeCCCEeEEEEEEECCEECCCCCEEE
Confidence            457888999999975421 1222334  5788999999999988766543 3445443