Citrus Sinensis ID: 030707

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLVNAVFDYLYNVLCYSFK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccEEEEEcccHHHHccHHHHHHHHHHHHHccccHHHHHccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEEHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHEEEccccccccccccccEEEEEccccccccccccEEEcEccccccccccccccccEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccHcHHHHHHHHHHHHHHHccccccccccccEEEEHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgsqvlpqalhwiprsstqcipskrlgfstvlsrgpfvshgvsvsakpigwnlgffvnaQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAesedkveeeevkaprkprvklgDIMGILNKRAveaseserpipdirtgdvVEIKLVNAVFDYLYNVLCYSFK
Flexible Loop (DISEMBL)
MGSQVLPQAlhwiprsstqcipSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAesedkveeeevkaprkprvklgdimGILNKraveaseserpipdirtgdvVEIKLVNAVFDYLYNVLCYSFK
Low Complexity Region (SEG)
MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRaeaneeaeanesieeeqneavqaqgdvvvaveaesedkveeeevkAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLVNAVFDYLYNVLCYSFK
Disordered region (IsUnstruct)
********ALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVR*******************************************************DIMGIL***************DIRTGDVVEIKLVNAVFDYLYNVLCYS**
Disordered Region (DISOPRED)
******P*ALHWIP*******************************AKPIGWNLGFFVNAQVKDSFV********************************************************GDIMGILNKRAVE****ERPIPDIRTGDVVEIKLVNAVFDYLYNVLCYSFK
Disordered Region (DISEMBL)
MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEA*******************AQGDVVVAVE****************KPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLVNAVFDYLYNVLCYSFK
Disordered Region (DISPRO)
**SQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSF****E********************************************PRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLVNAVFDYLYNVLCYSFK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVxxxxxxxxxxxxxxxxxxxxxxxxxxxxVVVAVEAESEDKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLVNAVFDYLYNVLCYSFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q8W463	225	50S ribosomal protein L19	yes	no	0.797	0.613	0.472	3e-28
Q8RXX5	229	50S ribosomal protein L19	no	no	0.820	0.620	0.445	1e-23
P82413	233	50S ribosomal protein L19	N/A	no	0.832	0.618	0.412	4e-18

>sp|Q8W463|RK191_ARATH 50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1

 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 99/161 (61%), Gaps = 23/161 (14%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPI---GWNLGFFV 57
           M    LPQALH IPR+ TQ   SK LGFS+ LS  P +   +SVS   +   G   GF +
Sbjct: 3   MSFHRLPQALHMIPRNPTQS--SKNLGFSSFLSCAPSMDSRISVSRLSLNHPGSKFGFSL 60

Query: 58  NAQVKDSFVVRAE-ANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEE-EVKAP 115
           + +V++ F+VRAE  N EAE+ E                 VA  A++E  VEE  E K  
Sbjct: 61  DTRVRNEFIVRAEEGNTEAESEE----------------FVAEIADTEGNVEEVVEAKPT 104

Query: 116 RKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
           RKPR+KLGD+MGILN++A+E +E  RP+P+IRTGD+VEIKL
Sbjct: 105 RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKL 145

Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXX5|RK192_ARATH 50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1

 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 93/157 (59%), Gaps = 15/157 (9%)

Query: 3   SQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGW---NLGFFVNA 59
           S +LPQALH IPR  T    SK LG S++L R   V+  +SVS   +     N GF +++
Sbjct: 5   SHLLPQALHMIPR--TPSFSSKNLGVSSILPRASSVNSRLSVSRVFLNHSSSNFGFAIDS 62

Query: 60  QVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPR 119
           + +  F+ +AE + E E          EAV  +  V    E E E  V  EE K P K R
Sbjct: 63  KKRKEFIAKAEESTEGE---------TEAV-VENAVETEAEGEGEATVAAEEAKPPWKTR 112

Query: 120 VKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
           VKLGDIMG+LNK+A+E +E+ RP+P +RTGD+VEIKL
Sbjct: 113 VKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKL 149

Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|P82413|RK19_SPIOL 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2

 Score = 90.9 bits (224), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 96/165 (58%), Gaps = 21/165 (12%)

Query: 1   MGSQVLPQALHWIPRS-STQCIP-SKRLGFSTVLSRGPFVSHGVS-------VSAKPIGW 51
           M S+VLPQAL  IP + S QC P  K+LGF    +R   +S            S+     
Sbjct: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60

Query: 52  NLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEE 111
           N     +   ++SFVVR+EA + ++A       ++ AV A+ ++ V  EAE+E++     
Sbjct: 61  NFSSIFSFPARNSFVVRSEAEDSSDA-----PAESVAVVAEEELPVESEAEAEER----- 110

Query: 112 VKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
              PR+ RVKLGDIMGILNK+AV A+E  RP+P IRTGD+V+I+L
Sbjct: 111 --PPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRL 153

Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA.

Spinacia oleracea (taxid: 3562)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
89257581	224	plastid ribosomal protein L19, putative	0.791	0.611	0.471	6e-27
18414915	225	50S ribosomal protein L19-1 [Arabidopsis	0.797	0.613	0.472	1e-26
359497145	231	PREDICTED: 50S ribosomal protein L19, ch	0.803	0.601	0.464	3e-24
449458994	221	PREDICTED: 50S ribosomal protein L19, ch	0.815	0.638	0.487	1e-22
297804426	225	ribosomal protein L19 family protein [Ar	0.774	0.595	0.464	2e-22
18422764	229	50S ribosomal protein L19-2 [Arabidopsis	0.820	0.620	0.445	5e-22
21592584	229	contains similarity to plastid ribosomal	0.820	0.620	0.445	7e-22
255581980	207	50S ribosomal protein L19, putative [Ric	0.838	0.700	0.475	8e-22
147854523	231	hypothetical protein VITISV_037813 [Viti	0.803	0.601	0.458	2e-21
224137920	241	predicted protein [Populus trichocarpa]	0.884	0.634	0.463	1e-20

>gi|89257581|gb|ABD65070.1| plastid ribosomal protein L19, putative [Brassica oleracea]

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/157 (47%), Positives = 99/157 (63%), Gaps = 20/157 (12%)

Query: 3   SQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNL---GFFVNA 59
           S + PQALH IPR+ TQ  PSK+LGFS+  S  P ++  ++VS   +  ++   GF ++A
Sbjct: 5   SHLFPQALHMIPRNPTQ--PSKKLGFSSFQSCAPSMNPRLTVSRVSLNHSVSKSGFSLDA 62

Query: 60  QVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPR 119
           + +   +VRAE            E + EAV A  D     E   ED VE  EVKAP+K R
Sbjct: 63  KARREVLVRAEG-----------EGEGEAVDANADT----EGNVEDVVEAGEVKAPKKTR 107

Query: 120 VKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
           VKLGD+MGILN++A+E SE  RP+P+IRTGD+VEIKL
Sbjct: 108 VKLGDVMGILNQKAIEVSEKLRPVPEIRTGDIVEIKL 144

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414915|ref|NP_567531.1| 50S ribosomal protein L19-1 [Arabidopsis thaliana] gi|75248729|sp|Q8W463.1|RK191_ARATH RecName: Full=50S ribosomal protein L19-1, chloroplastic; Flags: Precursor gi|17065490|gb|AAL32899.1| Unknown protein [Arabidopsis thaliana] gi|20148593|gb|AAM10187.1| unknown protein [Arabidopsis thaliana] gi|21554252|gb|AAM63327.1| contains similarity to plastid ribosomal protein L19 [Arabidopsis thaliana] gi|332658510|gb|AEE83910.1| 50S ribosomal protein L19-1 [Arabidopsis thaliana]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 99/161 (61%), Gaps = 23/161 (14%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPI---GWNLGFFV 57
           M    LPQALH IPR+ TQ   SK LGFS+ LS  P +   +SVS   +   G   GF +
Sbjct: 3   MSFHRLPQALHMIPRNPTQS--SKNLGFSSFLSCAPSMDSRISVSRLSLNHPGSKFGFSL 60

Query: 58  NAQVKDSFVVRAE-ANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEE-EVKAP 115
           + +V++ F+VRAE  N EAE+ E                 VA  A++E  VEE  E K  
Sbjct: 61  DTRVRNEFIVRAEEGNTEAESEE----------------FVAEIADTEGNVEEVVEAKPT 104

Query: 116 RKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
           RKPR+KLGD+MGILN++A+E +E  RP+P+IRTGD+VEIKL
Sbjct: 105 RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKL 145

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497145|ref|XP_002264869.2| PREDICTED: 50S ribosomal protein L19, chloroplastic [Vitis vinifera] gi|296088907|emb|CBI38456.3| unnamed protein product [Vitis vinifera]

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/168 (46%), Positives = 96/168 (57%), Gaps = 29/168 (17%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTV------------LSRGPFVSHGVSVSAKP 48
           M S+VLPQAL   PRSS Q  P K+LG ST             LS   F S+  +   +P
Sbjct: 1   MASKVLPQALFITPRSSNQW-PPKKLGLSTFPSPRSSSLNLNRLSTSRFSSNSFAFHFRP 59

Query: 49  IGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVE 108
           I  +   F        F+VRAEA+ E E      +E  E  +   +    V+ ++ED   
Sbjct: 60  IVVSPKRF--------FIVRAEADNEGELGA---DENTEEEETVSETESEVKLDAED--- 105

Query: 109 EEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
             E K PRKPRVKLGDIMGILNKRA+EASE ERP+PD+RTGD+VEIKL
Sbjct: 106 --EAKPPRKPRVKLGDIMGILNKRAIEASEKERPVPDLRTGDIVEIKL 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458994|ref|XP_004147231.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Cucumis sativus] gi|449523724|ref|XP_004168873.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Cucumis sativus]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/156 (48%), Positives = 96/156 (61%), Gaps = 15/156 (9%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQ 60
           M S++LPQA+  IPR+  QC P +RLGF + +S G  VS     S+  IG +    V A 
Sbjct: 1   MASKILPQAVISIPRNPNQCAP-RRLGFCSAVS-GTRVSFSTLSSSS-IGSHFHHTVAAP 57

Query: 61  VKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRV 120
           ++ +FVVRAEAN EA++      E       + D             + EE K  RKPRV
Sbjct: 58  LRRAFVVRAEANPEADSAAEEAPEAEVEAAVESDA------------QPEEEKPSRKPRV 105

Query: 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
           KLGD+MGILNKRA+EASE ERPIPDIRTGD+VE+KL
Sbjct: 106 KLGDVMGILNKRAIEASEKERPIPDIRTGDIVELKL 141

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804426|ref|XP_002870097.1| ribosomal protein L19 family protein [Arabidopsis lyrata subsp. lyrata] gi|297315933|gb|EFH46356.1| ribosomal protein L19 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 96/155 (61%), Gaps = 21/155 (13%)

Query: 6   LPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWN---LGFFVNAQVK 62
           LPQALH  PR+ TQ   SK LGFS+ LS  P ++  +SVS   +  +    GF ++ +V+
Sbjct: 8   LPQALHMTPRNPTQS--SKNLGFSSFLSCAPSMNSRISVSRLSLNHSSSKFGFSLDTRVR 65

Query: 63  DSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEE-EEVKAPRKPRVK 121
             F+VR E     E N           +A+ +  VA  A++E  VEE  E K  RKPR+K
Sbjct: 66  KEFIVRVE-----EGN----------TEAESEEAVAEIADTEGNVEEVGEAKPQRKPRIK 110

Query: 122 LGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
           LGD+MGILN+RA+E SE  RP+P+IRTGD+VEIKL
Sbjct: 111 LGDVMGILNQRAIEVSEKVRPVPEIRTGDIVEIKL 145

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422764|ref|NP_568677.1| 50S ribosomal protein L19-2 [Arabidopsis thaliana] gi|75247671|sp|Q8RXX5.1|RK192_ARATH RecName: Full=50S ribosomal protein L19-2, chloroplastic; Flags: Precursor gi|19347900|gb|AAL85972.1| unknown protein [Arabidopsis thaliana] gi|21436235|gb|AAM51256.1| unknown protein [Arabidopsis thaliana] gi|332008099|gb|AED95482.1| 50S ribosomal protein L19-2 [Arabidopsis thaliana]

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 93/157 (59%), Gaps = 15/157 (9%)

Query: 3   SQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGW---NLGFFVNA 59
           S +LPQALH IPR  T    SK LG S++L R   V+  +SVS   +     N GF +++
Sbjct: 5   SHLLPQALHMIPR--TPSFSSKNLGVSSILPRASSVNSRLSVSRVFLNHSSSNFGFAIDS 62

Query: 60  QVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPR 119
           + +  F+ +AE + E E          EAV  +  V    E E E  V  EE K P K R
Sbjct: 63  KKRKEFIAKAEESTEGE---------TEAV-VENAVETEAEGEGEATVAAEEAKPPWKTR 112

Query: 120 VKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
           VKLGDIMG+LNK+A+E +E+ RP+P +RTGD+VEIKL
Sbjct: 113 VKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKL 149

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592584|gb|AAM64533.1| contains similarity to plastid ribosomal protein L19 [Arabidopsis thaliana]

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/157 (44%), Positives = 93/157 (59%), Gaps = 15/157 (9%)

Query: 3   SQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGW---NLGFFVNA 59
           S +LPQALH IPR  T    SK LG S++L R   V+  +SVS   +     N GF +++
Sbjct: 5   SHLLPQALHMIPR--TPSFSSKNLGVSSILPRASSVNSRLSVSRVFLNHSSSNFGFAIDS 62

Query: 60  QVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPR 119
           + +  F+ +AE + E E          EAV  +  V    E E E  V  EE K P K R
Sbjct: 63  KKRREFIAKAEESTEGE---------TEAV-VENAVETEAEGEGEATVAAEEAKPPWKTR 112

Query: 120 VKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
           VKLGDIMG+LNK+A+E +E+ RP+P +RTGD+VEIKL
Sbjct: 113 VKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKL 149

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581980|ref|XP_002531788.1| 50S ribosomal protein L19, putative [Ricinus communis] gi|223528581|gb|EEF30602.1| 50S ribosomal protein L19, putative [Ricinus communis]

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 100/160 (62%), Gaps = 15/160 (9%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRG-PFVSHG---VSVSAKPIGWNLGFF 56
           M S++LPQAL  IP + TQC P ++LGFS  + R    +S+    VS+S+   G NL   
Sbjct: 1   MASKILPQALVLIPINPTQCPPPRKLGFSAAVHRSCSSLSNSTCRVSLSSNSFGSNLDSI 60

Query: 57  VNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPR 116
           ++A  K  F+ RAE+ E A A  + EE +   V+ Q           E+   EE    PR
Sbjct: 61  ISAFAKQRFIARAESEESAAAEVAEEESEVLEVEGQ-----------EEAKAEEIEIEPR 109

Query: 117 KPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
           KP +KLGDIMGILN+RAVEASE+ERPIPDIRTGD+++IKL
Sbjct: 110 KPIIKLGDIMGILNRRAVEASENERPIPDIRTGDILQIKL 149

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854523|emb|CAN82787.1| hypothetical protein VITISV_037813 [Vitis vinifera]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 94/168 (55%), Gaps = 29/168 (17%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTV------------LSRGPFVSHGVSVSAKP 48
           M S+VLPQAL   PRSS Q  P K+LG ST             LS   F S+      +P
Sbjct: 1   MASKVLPQALFITPRSSNQX-PPKKLGLSTFPSPRSXSLNLNRLSTSRFSSNSFXFHFRP 59

Query: 49  IGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVE 108
           I  +   F        F+V AEA+ E E      +E  E  +   +    V+ ++ED   
Sbjct: 60  IVVSPKRF--------FIVXAEADNEGELGP---DENTEEEETVSETESEVKLDAED--- 105

Query: 109 EEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
             E K PRKPRVKLGDIMGILNKRA+EASE ERP+PD+RTGD+VEIKL
Sbjct: 106 --EAKPPRKPRVKLGDIMGILNKRAIEASEKERPVPDLRTGDIVEIKL 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137920|ref|XP_002326473.1| predicted protein [Populus trichocarpa] gi|118483873|gb|ABK93827.1| unknown [Populus trichocarpa] gi|222833795|gb|EEE72272.1| predicted protein [Populus trichocarpa]

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/164 (46%), Positives = 93/164 (56%), Gaps = 11/164 (6%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGW--------N 52
           MGS++LPQAL  IPRS TQ    K+LGFS+ ++R  ++S+  S S   +          N
Sbjct: 1   MGSKILPQALAVIPRSPTQFPVPKKLGFSSTINRSSYLSNSASSSRFSVSRVSSTSLSSN 60

Query: 53  LGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEV 112
           L  F     + SFV RAE+         + EE     +         E    +   E  V
Sbjct: 61  LEAFFKDFSRQSFVTRAESES---GGGEVVEETENVEEEVVVEGSEEEEVQAEAEVEGAV 117

Query: 113 KAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
           K PRKPRVKLGDI+GILNKRAVE SE ERPIPDIRTGD+VEIKL
Sbjct: 118 KEPRKPRVKLGDIIGILNKRAVETSEMERPIPDIRTGDIVEIKL 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
TAIR|locus:2129186	225	AT4G17560 [Arabidopsis thalian	0.236	0.182	0.707	3.9e-24
TAIR|locus:2171609	229	AT5G47190 [Arabidopsis thalian	0.242	0.183	0.690	6.6e-21

TAIR|locus:2129186 AT4G17560 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 29/41 (70%), Positives = 38/41 (92%)

Query:   116 RKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
             RKPR+KLGD+MGILN++A+E +E  RP+P+IRTGD+VEIKL
Sbjct:   105 RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKL 145

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2171609 AT5G47190 [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
 Identities = 29/42 (69%), Positives = 37/42 (88%)

Query:   115 PRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
             P K RVKLGDIMG+LNK+A+E +E+ RP+P +RTGD+VEIKL
Sbjct:   108 PWKTRVKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKL 149

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT4G17560	ribosomal protein L19 family protein; ribosomal protein L19 family protein; FUNCTIONS IN- structural constituent of ribosome; INVOLVED IN- translation, ribosome biogenesis; LOCATED IN- ribosome, chloroplast stroma, chloroplast, membrane, chloroplast envelope; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Ribosomal protein L19 (InterPro-IPR001857), Ribosomal protein L19, conserved site (InterPro-IPR018257); BEST Arabidopsis thaliana protein match is- ribosomal protein L19 family protein (TAIR-AT5G47190.1); Has 5332 Blast hits to 5332 [...] (225 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT4G01310	ribosomal protein L5 family protein; ribosomal protein L5 family protein; FUNCTIONS IN- structu [...] (262 aa)				•	•		•		0.984
	emb2394	emb2394 (embryo defective 2394); structural constituent of ribosome; embryo defective 2394 (emb [...] (223 aa)				•	•		•		0.983
	emb1473	emb1473 (embryo defective 1473); structural constituent of ribosome; embryo defective 1473 (emb [...] (241 aa)				•	•		•		0.978
	RPL3A	ribosomal protein L3 family protein; ribosomal protein L3 family protein; FUNCTIONS IN- structu [...] (271 aa)			•	•	•		•		0.974
	AT3G13120	30S ribosomal protein S10, chloroplast, putative; 30S ribosomal protein S10, chloroplast, putat [...] (191 aa)				•			•		0.973
	PRPL11	PRPL11 (PLASTID RIBOSOMAL PROTEIN L11); structural constituent of ribosome; mutant has Decrease [...] (222 aa)				•	•		•		0.970
	RRF	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR); RIBOSOME RECYCLING FACTOR, CHLOROPLAST [...] (275 aa)				•	•		•		0.967
	AT3G63490	ribosomal protein L1 family protein; ribosomal protein L1 family protein; FUNCTIONS IN- structu [...] (346 aa)				•	•		•		0.965
	RPL4	RPL4; poly(U) binding / structural constituent of ribosome; encodes a plastid ribosomal protein [...] (282 aa)				•	•		•		0.959
	AT1G48350	ribosomal protein L18 family protein; ribosomal protein L18 family protein; FUNCTIONS IN- struc [...] (170 aa)				•	•		•		0.944

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
KOG1698	201	consensus Mitochondrial/chloroplast ribosomal prot	99.47
TIGR01024	113	rplS_bact ribosomal protein L19, bacterial type. T	97.87
PRK05338	116	rplS 50S ribosomal protein L19; Provisional	97.79
PF01245	113	Ribosomal_L19: Ribosomal protein L19; InterPro: IP	97.62
CHL00084	117	rpl19 ribosomal protein L19	97.61
COG0335	115	RplS Ribosomal protein L19 [Translation, ribosomal	96.56
PF09926	53	DUF2158: Uncharacterized small protein (DUF2158);	82.57

>KOG1698 consensus Mitochondrial/chloroplast ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=1e-13  Score=116.36  Aligned_cols=115  Identities=17%  Similarity=0.179  Sum_probs=84.9

Q ss_pred             ceeeecc---CCCccccceecccccceeEEeeccchhhhhchhhHHHhHHHHhhccccchhhccccchhhhhhhccCCCC
Q 030707           41 GVSVSAK---PIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRK  117 (173)
Q Consensus        41 rls~s~~---~~s~~~~~~~~~~~~~~fVvrAea~~ea~~~~~~~e~~~E~~~~~~d~v~~~Ege~~~v~eeee~~pprk  117 (173)
                      |+++++.   +..|++.+.+.....++|++.+|....+......                ..++..+...-.+..+..++
T Consensus         5 r~~~~r~~~~~~a~~~~v~l~~~~~~~~~~~~e~~~~a~~~~~~----------------~~~~~~~~~~~~~~~~~f~~   68 (201)
T KOG1698|consen    5 RLGFDRFPMFRAASYRNVSLKGKWFSSFIAISEERCFAPTKRPS----------------VNEPSPESPCVVEQYPEFLP   68 (201)
T ss_pred             eeeeecccccchhhhheeecccceeeeeccccccccccCCCCcc----------------cccCCCCCccccccCccccc
Confidence            4444444   4577777888888889999988774443322220                12333333333344566677


Q ss_pred             CccchhhHHhHhhHHHHHHhhhcCCCCCCCCCcEEEEEEeecccc---eeeeeEeee
Q 030707          118 PRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLVNAVFD---YLYNVLCYS  171 (173)
Q Consensus       118 krkk~g~IM~ILnkeavee~~~~R~iPdiRpGdIVelkvEVPEnk---r~~~~~c~~  171 (173)
                      -++..++||++||+++|++.++.|.+|.|++||||+|+.++|+|+   -+|-|+||.
T Consensus        69 ~~~~~~~~~e~Ldr~a~~~rr~~r~iPe~~~G~Iv~V~s~~p~~k~k~s~f~Gi~I~  125 (201)
T KOG1698|consen   69 LRKVAKRIMEILDRQAVLERRKVRDIPEFKVGSIVRVTSEDPENKRKVSRFKGICIR  125 (201)
T ss_pred             chhHHHHHHHhhCHHHHHHHHhcccCCccccccEEEEEecCCccCCceeEEEEEEEE
Confidence            777799999999999999999999999999999999999999999   467789986

>TIGR01024 rplS_bact ribosomal protein L19, bacterial type

Probab=97.87  E-value=3.3e-05  Score=60.12  Aligned_cols=43  Identities=14%  Similarity=0.356  Sum_probs=35.0

Q ss_pred             HHhHhhHHHHHHhhhcCCCCCCCCCcEEEEEEeecc-cce---eeeeEeeec
Q 030707          125 IMGILNKRAVEASESERPIPDIRTGDVVEIKLVNAV-FDY---LYNVLCYSF  172 (173)
Q Consensus       125 IM~ILnkeavee~~~~R~iPdiRpGdIVelkvEVPE-nkr---~~~~~c~~~  172 (173)
                      +|+.++++++     .+.+|+|++||+|++.+.++| |+.   .|.|+||.-
T Consensus         3 ~i~~~e~~~~-----~~~ip~f~~GD~v~V~~~i~eg~k~R~q~f~GvvI~~   49 (113)
T TIGR01024         3 LIKQIEQEQL-----KKDLPDFRVGDTVRVHVKIVEGKKERIQVFEGVVIAR   49 (113)
T ss_pred             HHHHHHHHHh-----hcCCCccCCCCEEEEEEEEccCCceEcccEEEEEEEE
Confidence            5666666655     578999999999999999998 553   589999974

This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs.

>PRK05338 rplS 50S ribosomal protein L19; Provisional

Probab=97.79  E-value=5e-05  Score=59.34  Aligned_cols=45  Identities=13%  Similarity=0.321  Sum_probs=36.1

Q ss_pred             hHHhHhhHHHHHHhhhcCCCCCCCCCcEEEEEEeeccc-c---eeeeeEeeecC
Q 030707          124 DIMGILNKRAVEASESERPIPDIRTGDVVEIKLVNAVF-D---YLYNVLCYSFK  173 (173)
Q Consensus       124 ~IM~ILnkeavee~~~~R~iPdiRpGdIVelkvEVPEn-k---r~~~~~c~~~~  173 (173)
                      .||+.++.+.+     .+.+|+|++||+|++.+.+.|. +   -.|.|+||+.+
T Consensus         2 ~~i~~~~~~~~-----~~~~p~f~~GD~V~V~~~i~eg~k~R~q~f~GvvI~~~   50 (116)
T PRK05338          2 NLIKEIEAEQL-----RKDIPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARR   50 (116)
T ss_pred             cHHHHHHHHHh-----hcCCCCcCCCCEEEEEEEEccCCceEeccEEEEEEEEe
Confidence            36677777766     3779999999999999999974 3   36999999853

>PF01245 Ribosomal_L19: Ribosomal protein L19; InterPro: IPR001857 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.62  E-value=0.00011  Score=56.73  Aligned_cols=39  Identities=21%  Similarity=0.356  Sum_probs=31.5

Q ss_pred             HHHhhhcCCCCCCCCCcEEEEEEeecccc----eeeeeEeeec
Q 030707          134 VEASESERPIPDIRTGDVVEIKLVNAVFD----YLYNVLCYSF  172 (173)
Q Consensus       134 vee~~~~R~iPdiRpGdIVelkvEVPEnk----r~~~~~c~~~  172 (173)
                      +|.......+|+|++||+|+|.+.++|..    ..|.|+|++.
T Consensus         7 ~e~~~~~~~~p~f~~GD~v~V~~~i~e~~k~r~q~f~GvvIa~   49 (113)
T PF01245_consen    7 VEREQIKKDIPEFRVGDTVRVTYKISEGNKERIQVFEGVVIAR   49 (113)
T ss_dssp             HHHTTCSSSSSSSSSSSEEEEEEEEESSSSEEEEEEEEEEEEE
T ss_pred             HHHHHhhcCCCCcCCCCEEEEEEEEecCCCceeEEEEEEEEEE
Confidence            44444469999999999999999999543    4689999975

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L19 is one of the proteins from the large ribosomal subunit [, ]. In Escherichia coli, L19 is known to be located at the 30S-50S ribosomal subunit interface [] and may play a role in the structure and function of the aminoacyl-tRNA binding site. It belongs to a family of ribosomal proteins, including L19 from bacteria and the chloroplasts of red algae. L19 is a protein of 120 to 130 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3HUZ_T 3V2D_T 3I8I_R 2XG2_T 2V49_T 2XUX_T 3HUX_T 3I9C_R 3V25_T 3UZ2_R ....

>CHL00084 rpl19 ribosomal protein L19

Probab=97.61  E-value=0.00016  Score=56.70  Aligned_cols=46  Identities=17%  Similarity=0.333  Sum_probs=35.6

Q ss_pred             hhhHHhHhhHHHHHHhhhcCCCCCCCCCcEEEEEEeecccc--e--eeeeEeeec
Q 030707          122 LGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLVNAVFD--Y--LYNVLCYSF  172 (173)
Q Consensus       122 ~g~IM~ILnkeavee~~~~R~iPdiRpGdIVelkvEVPEnk--r--~~~~~c~~~  172 (173)
                      +..||+-++++++     ...+|+|++||+|.+.+.+.|..  |  .|.|+||+.
T Consensus         4 ~~~~i~~~~~~~~-----~~~~p~f~~GDtV~V~~~i~eg~k~R~q~F~GvvI~~   53 (117)
T CHL00084          4 LQQLVKEIESEFL-----KKNLPKIRVGDTVKVGVLIQEGNKERVQFYEGTVIAK   53 (117)
T ss_pred             HHHHHHHHHHHHh-----hcCCCccCCCCEEEEEEEEecCCeeEeceEEEEEEEE
Confidence            3456666666655     35899999999999999999754  2  689999975

>COG0335 RplS Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=96.56  E-value=0.007  Score=47.92  Aligned_cols=44  Identities=18%  Similarity=0.306  Sum_probs=34.9

Q ss_pred             hHHhHhhHHHHHHhhhcCCCCCCCCCcEEEEEEeecccc----eeeeeEeeec
Q 030707          124 DIMGILNKRAVEASESERPIPDIRTGDVVEIKLVNAVFD----YLYNVLCYSF  172 (173)
Q Consensus       124 ~IM~ILnkeavee~~~~R~iPdiRpGdIVelkvEVPEnk----r~~~~~c~~~  172 (173)
                      .|++-|+++++..-     +|+|+|||.|.+.+-+=|..    -.|-|+|++.
T Consensus         4 ~~i~~le~~q~~~~-----iP~f~~GDtvrv~vki~Eg~keR~Q~FeGvVia~   51 (115)
T COG0335           4 PIIQQLEQEQIKKD-----IPSFRPGDTVRVHVKIVEGSKERVQAFEGVVIAR   51 (115)
T ss_pred             HHHHHHHHHHHHhh-----CCCCCCCCEEEEEEEEEeCCeEEEeeeeEEEEEE
Confidence            47788888877665     99999999999888777544    4578899875

>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function

Probab=82.57  E-value=0.8  Score=31.50  Aligned_cols=11  Identities=45%  Similarity=0.812  Sum_probs=9.6

Q ss_pred             CCCCcEEEEEE
Q 030707          146 IRTGDVVEIKL  156 (173)
Q Consensus       146 iRpGdIVelkv  156 (173)
                      |++||||+||=
T Consensus         1 f~~GDvV~LKS   11 (53)
T PF09926_consen    1 FKIGDVVQLKS   11 (53)
T ss_pred             CCCCCEEEEcc
Confidence            68999999983

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	173
3bbo_R	233	Homology Model For The Spinach Chloroplast 50s Subu		6e-12

>pdb|3BBO|R Chain R, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 233

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 115 PRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
           PR+ RVKLGDIMGILNK+AV A+E  RP+P IRTGD+V+I+L
Sbjct: 112 PRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRL 153

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	1e-16

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 233

 Score = 73.5 bits (180), Expect = 1e-16
 Identities = 54/163 (33%), Positives = 76/163 (46%), Gaps = 21/163 (12%)

Query: 1   MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVS---------VSAKPIGW 51
           M S+VLPQAL  IP + +   P  +      +      S   +          S+     
Sbjct: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60

Query: 52  NLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEE 111
           N     +   ++SFVVR+EA + ++A         E                 +   E E
Sbjct: 61  NFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEE------------ELPVESEAEAE 108

Query: 112 VKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEI 154
            + PR+ RVKLGDIMGILNK+AV A+E  RP+P IRTGD+V+I
Sbjct: 109 ERPPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQI 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	100.0
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	98.02
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	97.89

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=6.7e-39  Score=270.24  Aligned_cols=159  Identities=42%  Similarity=0.573  Sum_probs=45.6

Q ss_pred             CCccccccccccccCC-CCCCCC-CcceeccccccCCCcc----ccceeeeccCCCccccceeccc----ccceeEEeec
Q 030707            1 MGSQVLPQALHWIPRS-STQCIP-SKRLGFSTVLSRGPFV----SHGVSVSAKPIGWNLGFFVNAQ----VKDSFVVRAE   70 (173)
Q Consensus         1 Mas~vLPQAL~~iprs-p~q~~p-pk~LgfSS~~~r~s~~----~srls~s~~~~s~~~~~~~~~~----~~~~fVvrAe   70 (173)
                      ||||+|||||+++||+ |+|||| ||+||||+.+.|.-++    ++++++|+. +|++|||+|++.    +|++||+|||
T Consensus         1 m~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~f~~r~~   79 (233)
T 3bbo_R            1 MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRA-SSNLFSSNFSSIFSFPARNSFVVRSE   79 (233)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccccchhhhccccccccCCCCChhhcccccccccccccccccccceEeecc-ccccccccccchhccccccceeEeec
Confidence            9999999999999997 558876 8999998665443222    235666654 567777777665    8999999999


Q ss_pred             cchhhhhchhhHHHhHHHHhhccccchhhccccchhhhhhhccCCCCCccchhhHHhHhhHHHHHHhhhcCCCCCCCCCc
Q 030707           71 ANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGD  150 (173)
Q Consensus        71 a~~ea~~~~~~~e~~~E~~~~~~d~v~~~Ege~~~v~eeee~~pprkkrkk~g~IM~ILnkeavee~~~~R~iPdiRpGd  150 (173)
                      +++.  ++++.         ++.+++.++|+|.+..+|+ ++++|+|+++|||++|++||+++|++....+.+|+|++||
T Consensus        80 ~~~~--~~~~~---------~~~~~~~e~~~~~~~~~~~-~~~~p~~~~~k~~~iM~~L~re~ie~~q~kkdiPeFr~GD  147 (233)
T 3bbo_R           80 AEDS--SDAPA---------ESVAVVAEEELPVESEAEA-EERPPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGD  147 (233)
T ss_dssp             -----------------------------------------------------CCSSSCSTTHHHHTTCCSCCSSSCCCS
T ss_pred             cccC--CCCcc---------cchhhcccccchhhhhhcc-ccCCCCcchhHHHHHHHHHHHHHHHHHhhccCCCccCCCC
Confidence            9542  22221         1222343444443333333 3399999999999999999999999999999999999999


Q ss_pred             EEEEEEeecccce---eeeeEeeec
Q 030707          151 VVEIKLVNAVFDY---LYNVLCYSF  172 (173)
Q Consensus       151 IVelkvEVPEnkr---~~~~~c~~~  172 (173)
                      +|+|.+.++|||.   .|.|+||..
T Consensus       148 tV~V~vkI~E~KeRiQ~FeGVVIar  172 (233)
T 3bbo_R          148 IVQIRLEVPENKRRLSVYKGIVISR  172 (233)
T ss_dssp             CCCCCCCBCCCSSCCSCCBCCCCCS
T ss_pred             EEEEEEEeccCcceecceEEEEEEE
Confidence            9999999999874   489999974

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...

Probab=98.02  E-value=3.9e-06  Score=64.46  Aligned_cols=44  Identities=20%  Similarity=0.406  Sum_probs=36.7

Q ss_pred             hHHhHhhHHHHHHhhhcCCCCCCCCCcEEEEEEeecc-cc---eeeeeEeeec
Q 030707          124 DIMGILNKRAVEASESERPIPDIRTGDVVEIKLVNAV-FD---YLYNVLCYSF  172 (173)
Q Consensus       124 ~IM~ILnkeavee~~~~R~iPdiRpGdIVelkvEVPE-nk---r~~~~~c~~~  172 (173)
                      +||+.|++++|     .+.+|+|+|||+|.+.+.++| ++   -.|.|+||+-
T Consensus         2 ~~i~~~e~~~~-----~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~   49 (114)
T 3r8s_P            2 NIIKQLEQEQM-----KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAI   49 (114)
T ss_dssp             CHHHHHHGGGC-----CSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             hHHHHHHHHHh-----ccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEE
Confidence            47777777776     479999999999999999998 44   3699999974

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...

Probab=97.89  E-value=1.1e-05  Score=64.38  Aligned_cols=46  Identities=17%  Similarity=0.325  Sum_probs=37.3

Q ss_pred             hhhHHhHhhHHHHHHhhhcCCCCCCCCCcEEEEEEeeccc-c---eeeeeEeeec
Q 030707          122 LGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLVNAVF-D---YLYNVLCYSF  172 (173)
Q Consensus       122 ~g~IM~ILnkeavee~~~~R~iPdiRpGdIVelkvEVPEn-k---r~~~~~c~~~  172 (173)
                      |.+||+.++++.+     ...+|+|+|||+|.|.+.+.|. +   -.|.|+||+.
T Consensus         3 ~~~li~~ie~~~~-----~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~r   52 (146)
T 3v2d_T            3 RGALIKLVESRYV-----RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRI   52 (146)
T ss_dssp             HHHHHHHHHHTTC-----CCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHh-----hccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEE
Confidence            4567777777665     4799999999999999999974 3   3699999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d2zjrm1	108	Ribosomal protein L19 {Deinococcus radiodurans [Ta	97.85
d2gycn1	114	Ribosomal protein L19 {Escherichia coli [TaxId: 56	97.42
d2j01t1	138	Ribosomal protein L19 {Thermus thermophilus [TaxId	96.67

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.85  E-value=4.4e-06  Score=61.74  Aligned_cols=47  Identities=17%  Similarity=0.367  Sum_probs=38.3

Q ss_pred             cchhhHHhHhhHHHHHHhhhcCCCCCCCCCcEEEEEEeecccc----eeeeeEeeec
Q 030707          120 VKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLVNAVFD----YLYNVLCYSF  172 (173)
Q Consensus       120 kk~g~IM~ILnkeavee~~~~R~iPdiRpGdIVelkvEVPEnk----r~~~~~c~~~  172 (173)
                      .+..+||+.++++.      .+.+|+|+|||+|.+.+.+.|.+    -.|.|+||+-
T Consensus         6 i~~~~li~~ie~~~------~k~iP~f~~GDtV~V~~~i~Eg~k~RiQ~FeGvvI~~   56 (108)
T d2zjrm1           6 INRGELLRGIEQDH------TRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAI   56 (108)
T ss_dssp             CCHHHHHHHTTGGG------CCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEEC
T ss_pred             eCHHHHHHHHHHHh------CcCCCCcCCCCEEEEEEEEcCCCccceEEEEEEEEEE
Confidence            34678898888764      35699999999999999999854    2599999974

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=1.5e-06  Score=64.82  Aligned_cols=44  Identities=20%  Similarity=0.403  Sum_probs=36.1

Q ss_pred             hHHhHhhHHHHHHhhhcCCCCCCCCCcEEEEEEeecc-cce---eeeeEeeec
Q 030707          124 DIMGILNKRAVEASESERPIPDIRTGDVVEIKLVNAV-FDY---LYNVLCYSF  172 (173)
Q Consensus       124 ~IM~ILnkeavee~~~~R~iPdiRpGdIVelkvEVPE-nkr---~~~~~c~~~  172 (173)
                      .||+.|++++++     ..+|+|++||+|+|.+.+.| ++.   .|.|+||+-
T Consensus         2 nli~~ie~~q~k-----~~iP~f~~GDtV~V~~~i~eg~K~RiQ~feGvvIa~   49 (114)
T d2gycn1           2 NIIKQLEQEQMK-----QDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAI   49 (114)
T ss_dssp             CTTTSSSSSTTC-----CCCCCSCCCTTCCCCCCCCCCSSSSCCCCCCCCCCS
T ss_pred             hHHHHHHHHHhh-----ccCCCcCCCCEEEEEEEEccCCcceeeEEEEEEEEE
Confidence            467888888764     48999999999999998887 453   599999974

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

Probab=96.67  E-value=0.00015  Score=55.31  Aligned_cols=45  Identities=18%  Similarity=0.364  Sum_probs=35.3

Q ss_pred             hhHHhHhhHHHHHHhhhcCCCCCCCCCcEEEEEEeecc-cc---eeeeeEeeec
Q 030707          123 GDIMGILNKRAVEASESERPIPDIRTGDVVEIKLVNAV-FD---YLYNVLCYSF  172 (173)
Q Consensus       123 g~IM~ILnkeavee~~~~R~iPdiRpGdIVelkvEVPE-nk---r~~~~~c~~~  172 (173)
                      +.||+.++++.+     ...+|+|++||+|+|.+.+.| ++   ..|.|+||+.
T Consensus         4 ~~Li~~iE~~~~-----k~~iP~fr~GDtV~V~~~i~Eg~k~RiQ~f~GvvI~~   52 (138)
T d2j01t1           4 GALIKLVESRYV-----RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRI   52 (138)
T ss_dssp             HHHHHHHHCCCC-----CSCSCCCCSSCBBCCCCCCBTTBSCCCCCCBCEEEEE
T ss_pred             HHHHHHHHHHhh-----cccCCCcCCCCEEEEEEEEcCCCceEEEEEEEEEEEE
Confidence            456776666554     357999999999999999997 44   5788999964