Citrus Sinensis ID: 030733

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MSTLASSAHLIGPGFITNETHSQSQPTSVKFRPRPLRVSASACASTAERTRTHHHITSPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSGSPFAVSGVANTMATSSNSRFCAYSRRTWETDQCW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccHHccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEEEccccccEcccccccccccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mstlassahligpgfitnethsqsqptsvkfrprplrvsasaCASTaertrthhhitspgpgslyEILGIQTGATCQEIKTAYRKLARVLhpdvaaksqneNSAYKFMKLHEAYetlsdpkkradydrtlfrrrrpsgspfavsgvantmatssnsrfcaysrrtwetdqcw
Flexible Loop (DISEMBL)
MSTLASSAHLIGPgfitnethsqsqptsvkfrprplrVSASACAStaertrthhhitspgpgsLYEILGIQTGATCQEIKTAYRKLARVLHpdvaaksqnenSAYKFMKLHEayetlsdpkkradyDRTLfrrrrpsgspfavsgvantmatssnsrfcaysrrtwetdqcw
Low Complexity Region (SEG)
MSTLASSAHLIGPGFITNETHSQSQPTSVKFRPRPLRVSASACASTAERTRTHHHITSPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSGSPFAVSGVANTMATSSNSRFCAYSRRTWETDQCW
Disordered region (IsUnstruct)
*************************************************************GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVA*********YKFMKL***********************************************FCAYS**********
Disordered Region (DISOPRED)
**************************************************************SLYEILGIQTGATCQEIKTAYRKLARVLHPDVA***********FMKLHEAYETLSDPKKRADYDRTLFRR************VANTMATSSNSRFCAYSRRT*E**QCW
Disordered Region (DISEMBL)
********HLIGPGFITNE*************PRPLRV******************TSPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSGSPFAVSGVANTMATSSNSRFCAYSRR********
Disordered Region (DISPRO)
**********************************PLRVSAS******************GPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPS**************TSSNSRFCAY***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTLASSAHLIGPGFITNETHSQSQPTSVKFRPRPLRVSASACASTAERTRTHHHITSPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSGSPFAVSGVANTMATSSNSRFCAYSRRTWETDQCW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
Q9FYB5	161	Chaperone protein dnaJ 11	yes	no	0.738	0.788	0.441	9e-24
Q9SDN0	197	Chaperone protein dnaJ 20	no	no	0.761	0.664	0.355	2e-14
Q3AF07	381	Chaperone protein DnaJ OS	yes	no	0.360	0.162	0.593	1e-13
C4L424	368	Chaperone protein DnaJ OS	yes	no	0.372	0.173	0.537	4e-13
Q9LCQ4	375	Chaperone protein DnaJ OS	N/A	no	0.459	0.210	0.465	4e-13
B7HCT9	371	Chaperone protein DnaJ OS	yes	no	0.354	0.164	0.546	4e-13
B7IYG6	371	Chaperone protein DnaJ OS	yes	no	0.354	0.164	0.546	4e-13
Q818F0	371	Chaperone protein DnaJ OS	yes	no	0.354	0.164	0.546	5e-13
Q6HDK8	371	Chaperone protein DnaJ OS	yes	no	0.354	0.164	0.546	7e-13
Q81LS3	371	Chaperone protein DnaJ OS	yes	no	0.354	0.164	0.546	7e-13

>sp|Q9FYB5|DNJ11_ARATH Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2

 Score =  109 bits (272), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/145 (44%), Positives = 83/145 (57%), Gaps = 18/145 (12%)

Query: 32  RPRPLRVSASACASTAERTRTHHHI---TSPGPGSLYEILGIQTGATCQEIKTAYRKLAR 88
           R  P  VSAS   +  E +   H I    +  P SLY++L +  GAT Q+IK+AYR+LAR
Sbjct: 31  RISPPLVSASCSYTYTEDSPRLHQIPRRLTTVPASLYDVLEVPLGATSQDIKSAYRRLAR 90

Query: 89  VLHPDVAAKSQ-NENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSGSPFAVSGVA 147
           + HPDVA   + + +SA +FMK+H AY TLSDP+KR+ YDR + RR RP           
Sbjct: 91  ICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDPEKRSVYDRRMLRRSRP----------- 139

Query: 148 NTMATSSNSRFCAYSRRTWETDQCW 172
               T   S   +Y  R WETDQCW
Sbjct: 140 ---LTVGTSGLGSYVGRNWETDQCW 161

Have a continuous role in plant development probably in the structural organization of compartments.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SDN0|DNJ20_ARATH Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=2 SV=2

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 78/149 (52%), Gaps = 18/149 (12%)

Query: 2   STLASSAHLIGPGFITNETHSQSQPTSVKFRPRPLRVSA---SACASTAERTRTHHH--I 56
           S L+++ H   P F   +  S  QPTS+     P  +S    +  +ST  ++R  H   +
Sbjct: 8   SILSTNHH---PFFYKQQPISSLQPTSI-----PTTISYPTRTRFSSTRIQSRLTHDDPV 59

Query: 57  TSPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYET 116
                 S Y++LG+    T  EIK AY++LAR  HPDV+   + E    +F+++ EAYET
Sbjct: 60  KQSEDLSFYDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVEEYTDRFIRVQEAYET 119

Query: 117 LSDPKKRADYDRTLFRRRRPSGSPFAVSG 145
           LSDP++R  YDR L       G  F+ SG
Sbjct: 120 LSDPRRRVLYDRDL-----SMGFSFSFSG 143

Have a continuous role in plant development probably in the structural organization of compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3AF07|DNAJ_CARHZ Chaperone protein DnaJ OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dnaJ PE=3 SV=1

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 47/64 (73%), Gaps = 2/64 (3%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YEILG+   AT +EIK AYRKLAR  HPDV     + N+A KF +++EAYE LSDP+KRA
Sbjct: 6   YEILGVARNATPEEIKKAYRKLARKYHPDV--NKDDPNAAEKFKEINEAYEVLSDPEKRA 63

Query: 125 DYDR 128
            YD+
Sbjct: 64  RYDQ 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) (taxid: 246194)

>sp|C4L424|DNAJ_EXISA Chaperone protein DnaJ OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=dnaJ PE=3 SV=1

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 3/67 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YE+LG+   A+ Q+IK AYRKLAR  HPD+   +Q  ++A KF ++ EAYE LSD +KRA
Sbjct: 7   YEVLGLDKSASAQDIKRAYRKLARQYHPDI---NQEADAADKFKEIGEAYEVLSDEQKRA 63

Query: 125 DYDRTLF 131
            YDR  F
Sbjct: 64  QYDRFGF 70

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) (taxid: 360911)

>sp|Q9LCQ4|DNAJ_BRECH Chaperone protein DnaJ OS=Brevibacillus choshinensis GN=dnaJ PE=3 SV=1

 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 52/88 (59%), Gaps = 9/88 (10%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YE+LG+  GA   EIK AYRKLAR  HPDV   +  E    KF ++ EAY+ LS+P+KRA
Sbjct: 6   YEVLGVGKGADADEIKKAYRKLARQYHPDVNKAADAEE---KFKEVKEAYDVLSEPQKRA 62

Query: 125 DYDRTLFRRRRPS----GSPFAVSGVAN 148
            YDR  F  + P+    G  F  SG+  
Sbjct: 63  QYDR--FGHQDPNQGFGGGGFDASGMGG 88

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Brevibacillus choshinensis (taxid: 54911)

>sp|B7HCT9|DNAJ_BACC4 Chaperone protein DnaJ OS=Bacillus cereus (strain B4264) GN=dnaJ PE=3 SV=1

 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 3/64 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YE+LG+  GA+  EIK AYR+LA+  HPDV   S+ EN+  KF ++ EAYE LSD +KRA
Sbjct: 7   YEVLGLSKGASTDEIKKAYRRLAKKYHPDV---SKEENAIEKFKEVQEAYEVLSDDQKRA 63

Query: 125 DYDR 128
            YD+
Sbjct: 64  QYDQ 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Bacillus cereus (strain B4264) (taxid: 405532)

>sp|B7IYG6|DNAJ_BACC2 Chaperone protein DnaJ OS=Bacillus cereus (strain G9842) GN=dnaJ PE=3 SV=1

 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 3/64 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YE+LG+  GA+  EIK AYR+LA+  HPDV   S+ EN+  KF ++ EAYE LSD +KRA
Sbjct: 7   YEVLGLSKGASTDEIKKAYRRLAKKYHPDV---SKEENAIEKFKEVQEAYEVLSDDQKRA 63

Query: 125 DYDR 128
            YD+
Sbjct: 64  QYDQ 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Bacillus cereus (strain G9842) (taxid: 405531)

>sp|Q818F0|DNAJ_BACCR Chaperone protein DnaJ OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dnaJ PE=3 SV=1

 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 3/64 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YE+LG+  GA+  EIK AYR+LA+  HPDV   S+ EN+  KF ++ EAYE LSD +KRA
Sbjct: 7   YEVLGLSKGASTDEIKKAYRRLAKKYHPDV---SKEENAIEKFKEVQEAYEVLSDDQKRA 63

Query: 125 DYDR 128
            YD+
Sbjct: 64  QYDQ 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Bacillus cereus (strain ATCC 14579 / DSM 31) (taxid: 226900)

>sp|Q6HDK8|DNAJ_BACHK Chaperone protein DnaJ OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=dnaJ PE=3 SV=1

 Score = 73.6 bits (179), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 3/64 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YE+LG+  GA+  EIK AYR+LA+  HPDV   S+ EN+  KF ++ EAYE LSD +KRA
Sbjct: 7   YEVLGLSKGASKDEIKKAYRRLAKKYHPDV---SKEENAIEKFKEVQEAYEVLSDDQKRA 63

Query: 125 DYDR 128
            YD+
Sbjct: 64  QYDQ 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Bacillus thuringiensis subsp. konkukian (strain 97-27) (taxid: 281309)

>sp|Q81LS3|DNAJ_BACAN Chaperone protein DnaJ OS=Bacillus anthracis GN=dnaJ PE=3 SV=1

 Score = 73.6 bits (179), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 3/64 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YE+LG+  GA+  EIK AYR+LA+  HPDV   S+ EN+  KF ++ EAYE LSD +KRA
Sbjct: 7   YEVLGLSKGASKDEIKKAYRRLAKKYHPDV---SKEENAIEKFKEVQEAYEVLSDDQKRA 63

Query: 125 DYDR 128
            YD+
Sbjct: 64  QYDQ 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Bacillus anthracis (taxid: 1392)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
224065838	171	predicted protein [Populus trichocarpa]	0.947	0.953	0.591	2e-45
225457949	165	PREDICTED: chaperone protein dnaJ 11, ch	0.918	0.957	0.586	5e-43
224065833	169	predicted protein [Populus trichocarpa]	0.860	0.875	0.607	5e-42
118488950	169	unknown [Populus trichocarpa x Populus d	0.860	0.875	0.601	1e-41
224083040	175	predicted protein [Populus trichocarpa]	0.872	0.857	0.575	3e-40
255538960	171	Chaperone protein dnaJ 11, chloroplast p	0.889	0.894	0.591	9e-35
359476816	162	PREDICTED: chaperone protein dnaJ 11, ch	0.808	0.858	0.516	2e-31
147825452	479	hypothetical protein VITISV_035335 [Viti	0.709	0.254	0.595	7e-31
359475035	106	PREDICTED: chaperone protein dnaJ 11, ch	0.587	0.952	0.590	2e-29
449434150	164	PREDICTED: chaperone protein dnaJ 11, ch	0.569	0.597	0.581	3e-28

>gi|224065838|ref|XP_002301971.1| predicted protein [Populus trichocarpa] gi|222843697|gb|EEE81244.1| predicted protein [Populus trichocarpa]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 103/174 (59%), Positives = 124/174 (71%), Gaps = 11/174 (6%)

Query: 1   MSTLASSAH-LIGPGFITNETHSQSQPTSVKFRPRPLRVSASACASTAERTRTHHHITSP 59
           +++ +SSA   IG    TN++HS   P+ V FRP   RVSA ACASTAER  T    T+ 
Sbjct: 7   LTSFSSSASPFIGSKVSTNQSHSPP-PSRVSFRP--FRVSA-ACASTAERP-TSCIATAT 61

Query: 60  GPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSD 119
              SLYE+LGIQ GATCQEIKTAYR+LAR+LHPDVAA  Q E+ AY+FM++HEAYETLSD
Sbjct: 62  SASSLYEVLGIQMGATCQEIKTAYRRLARILHPDVAANGQREDKAYEFMRVHEAYETLSD 121

Query: 120 PKKRADYDRTLFRRRRPSGSPFAVSGV-ANTMATSSNSRFCAYSRRTWETDQCW 172
           P+KRADYDR+L+RR R  GSPF +S     TMAT     F  Y+ + WETDQCW
Sbjct: 122 PEKRADYDRSLYRRGRQMGSPFVMSAATVTTMATG----FSGYTSQRWETDQCW 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457949|ref|XP_002274505.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Vitis vinifera]

 Score =  179 bits (453), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 115/167 (68%), Gaps = 9/167 (5%)

Query: 6   SSAHLIGPGFITNETHSQSQPTSVKFRPRPLRVSASACASTAERTRTHHHITSPGPGSLY 65
           SS+H + P    N+    S PT V+FR +P +VSAS  A TAERT +H       P SLY
Sbjct: 8   SSSHFVVPKVAVNQR--ASPPTYVRFR-QP-KVSASYTA-TAERTMSH----IANPASLY 58

Query: 66  EILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRAD 125
           ++LGI  GATCQEIK AYR+LARV HPDV A SQ + SA +F+K+H AY TLSDP+KRAD
Sbjct: 59  DVLGINMGATCQEIKAAYRRLARVSHPDVVANSQKDTSADEFIKIHAAYATLSDPEKRAD 118

Query: 126 YDRTLFRRRRPSGSPFAVSGVANTMATSSNSRFCAYSRRTWETDQCW 172
           YDRTLFRRRRP  SPFA+S  A TM +S  S F   S   WETDQCW
Sbjct: 119 YDRTLFRRRRPVSSPFAMSASAATMGSSPASVFSGRSSLRWETDQCW 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065833|ref|XP_002301970.1| predicted protein [Populus trichocarpa] gi|222843696|gb|EEE81243.1| predicted protein [Populus trichocarpa]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 102/168 (60%), Positives = 115/168 (68%), Gaps = 20/168 (11%)

Query: 10  LIGPGFITNETHSQSQPTSVKFRP--RPLRVSASACASTAER--TRTHHHITSPGPGSLY 65
            IG  F TN      QP S+ FR   RP  VSAS CASTAER  +R    I      SLY
Sbjct: 17  FIGSKFSTN------QPHSLPFRASFRPFSVSAS-CASTAERPPSRNATQI------SLY 63

Query: 66  EILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRAD 125
           E+LGIQ GATCQEIK AYRKLAR LHPDVAA  Q E++AY+F+K+HEAYETLSDP KRAD
Sbjct: 64  EVLGIQMGATCQEIKAAYRKLARTLHPDVAANVQKEDTAYEFIKVHEAYETLSDPDKRAD 123

Query: 126 YDRTLFRRRRPSGSPFAVSGVANTMATS-SNSRFCAYSRRTWETDQCW 172
           YDR+LFR  R   SPF +S  A TM T+   + F AY+RR WETDQCW
Sbjct: 124 YDRSLFRPGRQMSSPFVMS--AATMETNVVAAGFPAYTRRRWETDQCW 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488950|gb|ABK96283.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/168 (60%), Positives = 115/168 (68%), Gaps = 20/168 (11%)

Query: 10  LIGPGFITNETHSQSQPTSVKFRP--RPLRVSASACASTAER--TRTHHHITSPGPGSLY 65
            IG  F TN      QP S+ FR   RP  VSAS CA+TAER  +R    I      SLY
Sbjct: 17  FIGSKFSTN------QPHSLPFRASFRPFSVSAS-CAATAERPPSRNATQI------SLY 63

Query: 66  EILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRAD 125
           E+LGIQ GATCQEIK AYRKLAR LHPDVAA  Q E++AY+F+K+HEAYETLSDP KRAD
Sbjct: 64  EVLGIQMGATCQEIKAAYRKLARTLHPDVAANVQKEDTAYEFIKVHEAYETLSDPDKRAD 123

Query: 126 YDRTLFRRRRPSGSPFAVSGVANTMATS-SNSRFCAYSRRTWETDQCW 172
           YDR+LFR  R   SPF +S  A TM T+   + F AY+RR WETDQCW
Sbjct: 124 YDRSLFRPGRQMSSPFVMS--AATMETNVVAAGFPAYTRRRWETDQCW 169

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083040|ref|XP_002306936.1| predicted protein [Populus trichocarpa] gi|118488256|gb|ABK95947.1| unknown [Populus trichocarpa] gi|118489829|gb|ABK96714.1| unknown [Populus trichocarpa x Populus deltoides] gi|222856385|gb|EEE93932.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 91/158 (57%), Positives = 112/158 (70%), Gaps = 8/158 (5%)

Query: 17  TNETHSQSQPTSVKFRPRPLRVSASACASTAERTRTHHHITSPGPGSLYEILGIQTGATC 76
           TN+ H+   P+ V FRP   RV A ACA+TAER  T +  T     SLYE+LGIQ GATC
Sbjct: 24  TNQPHTS--PSRVSFRP--FRVRA-ACATTAERP-TSYTATPTSASSLYEVLGIQMGATC 77

Query: 77  QEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRP 136
            EIKTAYR+LARVLHPDVAA  + E++AY+F+++HEAYETLSDP+KRADYDR+L+RR R 
Sbjct: 78  TEIKTAYRRLARVLHPDVAANGRREDTAYEFIRVHEAYETLSDPEKRADYDRSLYRRGRQ 137

Query: 137 SGSPFAVSGVANTMATSSNSR--FCAYSRRTWETDQCW 172
             SPF +S    T   +  +   F  Y+RR WETDQCW
Sbjct: 138 MSSPFVMSAATATTMATGYAAAGFSGYTRRRWETDQCW 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538960|ref|XP_002510545.1| Chaperone protein dnaJ 11, chloroplast precursor, putative [Ricinus communis] gi|223551246|gb|EEF52732.1| Chaperone protein dnaJ 11, chloroplast precursor, putative [Ricinus communis]

 Score =  151 bits (382), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 97/164 (59%), Positives = 116/164 (70%), Gaps = 11/164 (6%)

Query: 10  LIGPGFITNETHSQSQPTSVKFRPRPLRVSASACASTAERTRTHHHITSPGPGSLYEILG 69
            IGP F T+ +H +S P+ V FR   LRVSA+ CA+TA+RT    HI+S G  SLYE+LG
Sbjct: 18  FIGPKFPTD-SH-RSPPSRVSFRQ--LRVSAN-CATTADRTAAAPHISSAG--SLYEVLG 70

Query: 70  IQTGATCQEIKTAYRKLARVLHPDVAAKS-QNENSAYKFMKLHEAYETLSDPKKRADYDR 128
           IQ GATCQEIK AYR+LARVLHPD A  + Q EN A +F+K+HEAYETLSDP+KRADYDR
Sbjct: 71  IQMGATCQEIKAAYRRLARVLHPDAATDNGQKENKANEFIKVHEAYETLSDPEKRADYDR 130

Query: 129 TLFRRRRPSGSPFAVSGVANTMATSSNSRFCAYSRRTWETDQCW 172
           +LF R R   S F  S      A++S S F  + RR WETDQCW
Sbjct: 131 SLFWRGRQLSSAFITS---AMAASASGSGFSGFPRRRWETDQCW 171

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476816|ref|XP_002265844.2| PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Vitis vinifera]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/153 (51%), Positives = 99/153 (64%), Gaps = 14/153 (9%)

Query: 27  TSVKFRPRPLRVS-----ASACASTAERTRTHHH--ITSPGPGSLYEILGIQTGATCQEI 79
           T   F P P RVS      SA  ++ ER R  +     +    SLYEILGI+ GAT QEI
Sbjct: 17  TGRAFSPAPPRVSYRQPCVSAVYTSTERARPSYLSLAETASCASLYEILGIRMGATSQEI 76

Query: 80  KTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSGS 139
           K+AYRKLARV HPDVAA S+ ++SA +FM++H AY TLSDP+KRADYDR+LF R++P  S
Sbjct: 77  KSAYRKLARVCHPDVAAISRKDSSADEFMRIHAAYSTLSDPEKRADYDRSLFMRQQPIES 136

Query: 140 PFAVSGVANTMATSSNSRFCAYSRRTWETDQCW 172
              +S       + + S F  Y+RR WETDQCW
Sbjct: 137 YAGIS-------SPTMSGFSGYTRRNWETDQCW 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147825452|emb|CAN73239.1| hypothetical protein VITISV_035335 [Vitis vinifera]

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 78/131 (59%), Positives = 93/131 (70%), Gaps = 9/131 (6%)

Query: 6   SSAHLIGPGFITNETHSQSQPTSVKFRPRPLRVSASACASTAERTRTHHHITSPGPGSLY 65
           SS+H + P    N+    S PT V+FR +P +VSAS  A TAERT +H       P SLY
Sbjct: 245 SSSHFVVPKVAVNQ--RASPPTYVRFR-QP-KVSASYTA-TAERTMSH----IANPASLY 295

Query: 66  EILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRAD 125
           ++LGI  GATCQEIK AYR+LARV HPDV A SQ + SA +F+K+H AY TLSDP+KRA 
Sbjct: 296 DVLGINMGATCQEIKAAYRRLARVSHPDVVANSQKDTSADEFIKIHAAYATLSDPEKRAX 355

Query: 126 YDRTLFRRRRP 136
           YDRTLFRRRRP
Sbjct: 356 YDRTLFRRRRP 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475035|ref|XP_002277590.2| PREDICTED: chaperone protein dnaJ 11, chloroplastic [Vitis vinifera]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 75/110 (68%), Gaps = 9/110 (8%)

Query: 63  SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKK 122
           SLYE+LGI   A+  EIK AYR+LARV HPDV A +Q E SA +FMK+H AY TLSDP K
Sbjct: 6   SLYEVLGIPVSASGNEIKAAYRRLARVCHPDVVAMNQKETSANEFMKIHAAYSTLSDPDK 65

Query: 123 RADYDRTLFRRRRPSGSPFAVSGVANTMATSSNSRFCAYSRRTWETDQCW 172
           RA+YD+ LFRRRRP         V  T   +  S F  +SRRTWETDQCW
Sbjct: 66  RANYDQDLFRRRRP---------VMATAMRTGGSSFSGFSRRTWETDQCW 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434150|ref|XP_004134859.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic-like isoform 1 [Cucumis sativus] gi|449491346|ref|XP_004158867.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic-like isoform 1 [Cucumis sativus]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 76/110 (69%), Gaps = 12/110 (10%)

Query: 63  SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKK 122
           SLY++LGI TGA+ QEIK+AYR+LAR+ HPDVAA  + ++SA  FMK+H AY TLSDP+K
Sbjct: 67  SLYDVLGIPTGASFQEIKSAYRRLARLCHPDVAAIHRKDSSATDFMKIHAAYSTLSDPEK 126

Query: 123 RADYDRTLFRRRRPSGSPFAVSGVANTMATSSNSRFCAYSRRTWETDQCW 172
           RADYDR L RR RP  S    SG            F  Y+RR WETDQCW
Sbjct: 127 RADYDRKLLRRCRPVASARMASG------------FTGYTRRNWETDQCW 164

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2827820	160	AT2G17880 "AT2G17880" [Arabido	0.732	0.787	0.465	8.2e-26
TAIR|locus:2135159	161	J11 "AT4G36040" [Arabidopsis t	0.796	0.850	0.438	1.4e-23
TAIR|locus:2088100	157	AT3G13310 [Arabidopsis thalian	0.877	0.961	0.369	1.1e-16
TAIR|locus:2119465	197	J20 "AT4G13830" [Arabidopsis t	0.720	0.629	0.378	4.2e-15
TIGR_CMR|CHY_0416	381	CHY_0416 "chaperone protein dn	0.360	0.162	0.593	7.2e-14
TIGR_CMR|BA_4538	371	BA_4538 "chaperone protein dna	0.354	0.164	0.546	1.4e-12
UNIPROTKB|E1BWR7	345	DNAJB5 "Uncharacterized protei	0.354	0.176	0.562	1.5e-12
UNIPROTKB|Q5T657	155	DNAJB5 "DnaJ homolog subfamily	0.354	0.393	0.531	8.2e-12
TIGR_CMR|CJE_1364	297	CJE_1364 "co-chaperone protein	0.366	0.212	0.5	9e-12
MGI|MGI:1913576	199	Dnajc5b "DnaJ (Hsp40) homolog,	0.470	0.407	0.425	1.3e-11

TAIR|locus:2827820 AT2G17880 "AT2G17880" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
 Identities = 60/129 (46%), Positives = 75/129 (58%)

Query:    22 SQSQPTSV-KFRPRPLRVSAS-ACASTAERTRTHHHITSPGPGSLYEILGIQTGATCQEI 79
             S S P+ + +  P     +AS  CA    R R      S    SLYEIL I  G+T QEI
Sbjct:    26 STSPPSRISRISPSLSTTTASYTCAEDLPRLRQIPQRFS-ATASLYEILEIPVGSTSQEI 84

Query:    80 KTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSGS 139
             K+AYR+LAR+ HPDVA  S++ +SA  FMK+H AY TLSDP+KRA YDR    R RP  +
Sbjct:    85 KSAYRRLARICHPDVARNSRDNSSADDFMKIHAAYCTLSDPEKRAVYDRRTLLRSRPLTA 144

Query:   140 PFAVSGVAN 148
              +   G  N
Sbjct:   145 GYGSYGGRN 153

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2135159 J11 "AT4G36040" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 68/155 (43%), Positives = 88/155 (56%)

Query:    22 SQSQPTSVKFRPRPLRVSASACASTAERTRTHHHIT---SPGPGSLYEILGIQTGATCQE 78
             S   P S   R  P  VSAS   +  E +   H I    +  P SLY++L +  GAT Q+
Sbjct:    21 SPISPPSRTARISPPLVSASCSYTYTEDSPRLHQIPRRLTTVPASLYDVLEVPLGATSQD 80

Query:    79 IKTAYRKLARVLHPDVAAKSQ-NENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPS 137
             IK+AYR+LAR+ HPDVA   + + +SA +FMK+H AY TLSDP+KR+ YDR + RR RP 
Sbjct:    81 IKSAYRRLARICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDPEKRSVYDRRMLRRSRPL 140

Query:   138 GSPFAVSGVANTMATSSNSRFCAYSRRTWETDQCW 172
                        T+ TS      +Y  R WETDQCW
Sbjct:   141 -----------TVGTSGLG---SYVGRNWETDQCW 161

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2088100 AT3G13310 [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 64/173 (36%), Positives = 82/173 (47%)

Query:     3 TLASSAHLIGPG--FITNETHSQSQPTSVKFRPRPLRVSASACASTAERTRTHHHITSPG 60
             TL +SA    PG   +  +  ++    + +F        ASA    AE   T        
Sbjct:     4 TLVNSAGRFSPGNCILPQQRTARFYSGTARFPTGAPSFKASAQTLNAEPAVTES--VRRR 61

Query:    61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDP 120
               SLYE+L +   A+  EIKTAYR LA+V HPD +     E+    FM++H+AY TL+DP
Sbjct:    62 VSSLYELLKVNETASLTEIKTAYRSLAKVYHPDAS-----ESDGRDFMEIHKAYATLADP 116

Query:   121 KKRADYDRTL-FRRRRPSGSPFAVSGVANTMATSSNSRFCAYSRRTWETDQCW 172
               RA YD TL   RRR        SG           R  A +RR WETDQCW
Sbjct:   117 TTRAIYDSTLRVPRRRVHAGAMGRSG-----------RVYATTRR-WETDQCW 157

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2119465 J20 "AT4G13830" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 50/132 (37%), Positives = 71/132 (53%)

Query:     2 STLASSAHLIGPGFITNETHSQSQPTSVKFR-PRPLRVSASACASTAERTRTHHH--ITS 58
             S++ S+ H   P F   +  S  QPTS+      P R   S   ST  ++R  H   +  
Sbjct:     7 SSILSTNH--HPFFYKQQPISSLQPTSIPTTISYPTRTRFS---STRIQSRLTHDDPVKQ 61

Query:    59 PGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLS 118
                 S Y++LG+    T  EIK AY++LAR  HPDV+   + E    +F+++ EAYETLS
Sbjct:    62 SEDLSFYDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVEEYTDRFIRVQEAYETLS 121

Query:   119 DPKKRADYDRTL 130
             DP++R  YDR L
Sbjct:   122 DPRRRVLYDRDL 133

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TIGR_CMR|CHY_0416 CHY_0416 "chaperone protein dnaJ" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 185 (70.2 bits), Expect = 7.2e-14, P = 7.2e-14
 Identities = 38/64 (59%), Positives = 47/64 (73%)

Query:    65 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
             YEILG+   AT +EIK AYRKLAR  HPDV     + N+A KF +++EAYE LSDP+KRA
Sbjct:     6 YEILGVARNATPEEIKKAYRKLARKYHPDV--NKDDPNAAEKFKEINEAYEVLSDPEKRA 63

Query:   125 DYDR 128
              YD+
Sbjct:    64 RYDQ 67

GO:0006457 "protein folding" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

TIGR_CMR|BA_4538 BA_4538 "chaperone protein dnaJ" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 173 (66.0 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 35/64 (54%), Positives = 46/64 (71%)

Query:    65 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
             YE+LG+  GA+  EIK AYR+LA+  HPDV   S+ EN+  KF ++ EAYE LSD +KRA
Sbjct:     7 YEVLGLSKGASKDEIKKAYRRLAKKYHPDV---SKEENAIEKFKEVQEAYEVLSDDQKRA 63

Query:   125 DYDR 128
              YD+
Sbjct:    64 QYDQ 67

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|E1BWR7 DNAJB5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 172 (65.6 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 36/64 (56%), Positives = 47/64 (73%)

Query:    65 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
             Y+ILGIQ+GA   EIK AYRK+A   HPD   K+++ N+  KF ++ EAY+ LSDPKKRA
Sbjct:     6 YKILGIQSGANEDEIKKAYRKMALKYHPD---KNKDPNAEEKFKEIAEAYDVLSDPKKRA 62

Query:   125 DYDR 128
              YD+
Sbjct:    63 VYDQ 66

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

UNIPROTKB|Q5T657 DNAJB5 "DnaJ homolog subfamily B member 5" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 34/64 (53%), Positives = 44/64 (68%)

Query:    65 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
             Y+ILGI +GA   EIK AYRK+A   HPD   K++  N+  KF ++ EAY+ LSDPKKR 
Sbjct:     6 YKILGIPSGANEDEIKKAYRKMALKYHPD---KNKEPNAEEKFKEIAEAYDVLSDPKKRG 62

Query:   125 DYDR 128
              YD+
Sbjct:    63 LYDQ 66

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

TIGR_CMR|CJE_1364 CJE_1364 "co-chaperone protein DnaJ" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 163 (62.4 bits), Expect = 9.0e-12, P = 9.0e-12
 Identities = 33/66 (50%), Positives = 45/66 (68%)

Query:    63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKK 122
             SLYE LG+   A+  EIK AYR+LAR  HPD+   ++ + +  KF +++ AYE LSD KK
Sbjct:     3 SLYETLGVSKNASADEIKKAYRRLARKYHPDI---NKEKGAEEKFKEINAAYEILSDEKK 59

Query:   123 RADYDR 128
             RA YD+
Sbjct:    60 RAQYDQ 65

GO:0006457 "protein folding" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

MGI|MGI:1913576 Dnajc5b "DnaJ (Hsp40) homolog, subfamily C, member 5 beta" [Mus musculus (taxid:10090)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 37/87 (42%), Positives = 54/87 (62%)

Query:    42 ACASTAERTRTHHHITSPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNE 101
             AC +  +R RT   +++ G  SLYEILG+  GA+C+EIK  YRKLA   HPD      + 
Sbjct:     2 ACNAPNQRQRT---LSTSGE-SLYEILGLHKGASCEEIKKTYRKLALRHHPD--KNPDDP 55

Query:   102 NSAYKFMKLHEAYETLSDPKKRADYDR 128
             ++A KF +++ A+  L+D  KR  YD+
Sbjct:    56 SAAEKFKEINNAHTILTDTSKRNIYDK 82

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00020187	hypothetical protein (171 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0261001401	hypothetical protein (124 aa)			•						0.503
	eugene3.02610008	hypothetical protein (132 aa)			•						0.503
	eugene3.00860035	hypothetical protein (705 aa)			•						0.503
	estExt_fgenesh4_pg.C_1500058	hypothetical protein (706 aa)			•						0.503
	gw1.XIII.1526.1	annotation not avaliable (81 aa)			•						0.502
	fgenesh4_pg.C_LG_X000812	hypothetical protein (572 aa)			•						0.502
	fgenesh4_pg.C_LG_VIII000455	hypothetical protein (651 aa)			•						0.502
	eugene3.00130164	hypothetical protein (660 aa)			•						0.502
	eugene3.00120231	hypothetical protein (668 aa)			•						0.502
	estExt_fgenesh4_pm.C_LG_I0291	SubName- Full=Putative uncharacterized protein; (666 aa)			•						0.502

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
pfam00226	63	pfam00226, DnaJ, DnaJ domain	1e-25
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	4e-23
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	2e-22
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	6e-21
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	4e-20
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	3e-19
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	3e-18
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	4e-17
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	7e-17
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	1e-16
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	1e-16
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	2e-16
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	2e-16
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	8e-16
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	1e-15
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	2e-15
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	2e-15
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	3e-15
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	4e-15
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	6e-15
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	9e-15
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	2e-14
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	2e-14
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	5e-14
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	5e-14
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	1e-13
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-13
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	1e-13
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	3e-13
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	3e-13
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	7e-13
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	7e-13
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	9e-13
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	2e-12
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	9e-11
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	2e-09
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	2e-09
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	1e-06
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	1e-05
TIGR00714	155	TIGR00714, hscB, Fe-S protein assembly co-chaperon	3e-05
PRK00294	173	PRK00294, hscB, co-chaperone HscB; Provisional	9e-05
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	1e-04

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 92.6 bits (231), Expect = 1e-25
 Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 2/64 (3%)

Query: 64  LYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKR 123
            YEILG+   A+ +EIK AYRKLA   HPD      +  +  KF +++EAYE LSDP+KR
Sbjct: 2   YYEILGVPRDASDEEIKKAYRKLALKYHPDKN--PGDPAAEEKFKEINEAYEVLSDPEKR 59

Query: 124 ADYD 127
           A YD
Sbjct: 60  AIYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 93.5 bits (233), Expect = 4e-23
 Identities = 33/66 (50%), Positives = 45/66 (68%), Gaps = 2/66 (3%)

Query: 63  SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKK 122
             YEILG+   A+ +EIK AYRKLA+  HPD      ++ +  KF +++EAYE LSDP+K
Sbjct: 5   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNP--GDKEAEEKFKEINEAYEVLSDPEK 62

Query: 123 RADYDR 128
           RA YD+
Sbjct: 63  RAAYDQ 68

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 91.5 bits (228), Expect = 2e-22
 Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 5/94 (5%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YEILG+   A+ +EIK AYRKLA+  HPD    ++++ +  KF +++EAYE LSDP+KRA
Sbjct: 3   YEILGVSKDASEEEIKKAYRKLAKKYHPDR---NKDKEAEEKFKEINEAYEVLSDPEKRA 59

Query: 125 DYDRTLFRRRRPSGSPFAVSGVANTMATSSNSRF 158
            YD+  F     +G      G  N         F
Sbjct: 60  QYDQ--FGHAGFNGGGGGGGGGFNGFDIGFFGDF 91

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 80.7 bits (200), Expect = 6e-21
 Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 63  SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKK 122
             YEILG+   A+  EIK AYRKLA   HPD     + E +  KF +++EAYE LSDP+K
Sbjct: 2   DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDK-EEAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 85.2 bits (211), Expect = 4e-20
 Identities = 31/64 (48%), Positives = 44/64 (68%), Gaps = 3/64 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YE+LG+   A+  EIK AYRKL++  HPD+   ++ E +  KF ++ EAYE LSD +KRA
Sbjct: 7   YEVLGVSKSASKDEIKKAYRKLSKKYHPDI---NKEEGADEKFKEISEAYEVLSDDQKRA 63

Query: 125 DYDR 128
            YD+
Sbjct: 64  QYDQ 67

Length = 376

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 76.0 bits (188), Expect = 3e-19
 Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 2/55 (3%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSD 119
           Y+ILG+   A+ +EIK AYRKLA   HPD      +  +  KF +++EAYE LSD
Sbjct: 3   YDILGVPPDASDEEIKKAYRKLALKYHPDKN--PDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 79.8 bits (198), Expect = 3e-18
 Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 4/65 (6%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQ-NENSAYKFMKLHEAYETLSDPKKR 123
           YE+LG+   A+  EIK AYRKLA   HPD   ++  ++ +  KF ++ EAYE LSDP+KR
Sbjct: 7   YEVLGVSRNASEDEIKKAYRKLAMKYHPD---RNPGDKEAEEKFKEIKEAYEVLSDPQKR 63

Query: 124 ADYDR 128
           A YD+
Sbjct: 64  AAYDQ 68

Length = 371

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 77.1 bits (190), Expect = 4e-17
 Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 2/65 (3%)

Query: 64  LYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKR 123
            YEILG+   AT +EIK AYR+LA+  HPD      ++ +  KF +++EAYE LSDP+KR
Sbjct: 7   YYEILGVDRNATEEEIKKAYRRLAKKYHPD--LNPGDKEAEQKFKEINEAYEILSDPQKR 64

Query: 124 ADYDR 128
           A YD+
Sbjct: 65  AQYDQ 69

Length = 386

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 76.1 bits (187), Expect = 7e-17
 Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 5/83 (6%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YE+LG+   A+  EIK+AYRKLA   HPD   +++ + +A KF +++EAY  LSD +KRA
Sbjct: 5   YELLGVSRTASADEIKSAYRKLALKYHPD---RNKEKGAAEKFAQINEAYAVLSDAEKRA 61

Query: 125 DYDR--TLFRRRRPSGSPFAVSG 145
            YDR  T      P G PF   G
Sbjct: 62  HYDRFGTAPGAGMPGGDPFGGMG 84

Length = 371

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 76.0 bits (187), Expect = 1e-16
 Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 3/64 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YE+LG+   A  +EIK AYRKLAR  HPDV   S+ E +  KF ++ EAY  LSD +KR 
Sbjct: 8   YEVLGVDRNADKKEIKKAYRKLARKYHPDV---SEEEGAEEKFKEISEAYAVLSDDEKRQ 64

Query: 125 DYDR 128
            YD+
Sbjct: 65  RYDQ 68

Length = 378

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 75.6 bits (186), Expect = 1e-16
 Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 3/63 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YEILG+   AT +EIK AYR+LAR  HPD     + E    KF +++EAY+ LSDP+KR 
Sbjct: 6   YEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEE---KFKEINEAYQVLSDPEKRK 62

Query: 125 DYD 127
            YD
Sbjct: 63  LYD 65

Length = 382

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 75.2 bits (185), Expect = 2e-16
 Identities = 32/65 (49%), Positives = 46/65 (70%), Gaps = 4/65 (6%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSA-YKFMKLHEAYETLSDPKKR 123
           YE+LG++ GA+  EIK A+RKLA   HPD   K++    A  KF +++EAY+ LSDP+K+
Sbjct: 7   YEVLGLEKGASDDEIKKAFRKLAIKYHPD---KNKGNKEAEEKFKEINEAYQVLSDPQKK 63

Query: 124 ADYDR 128
           A YD+
Sbjct: 64  AQYDQ 68

Length = 380

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 32/63 (50%), Positives = 41/63 (65%), Gaps = 3/63 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y +LG+   A+  EIK AYRKLAR LHPDV   + +E +  KF ++  AYE LSDP+KR 
Sbjct: 6   YGLLGVSRNASDAEIKRAYRKLARELHPDV---NPDEEAQEKFKEISVAYEVLSDPEKRR 62

Query: 125 DYD 127
             D
Sbjct: 63  IVD 65

Length = 378

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 73.2 bits (180), Expect = 8e-16
 Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 64  LYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKR 123
            Y+ LG+   A+  EIK AYRKL++  HPD+  +   E    K+ ++ EAYETLSDP+KR
Sbjct: 6   YYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEE---KYKEVQEAYETLSDPQKR 62

Query: 124 ADYDR 128
           A YD+
Sbjct: 63  AAYDQ 67

Length = 380

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 3/68 (4%)

Query: 61  PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDP 120
               YEILG+   A   E+K AYR+LAR  HPDV  +   E+   +F +++ AYE LSDP
Sbjct: 2   AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAED---RFKEINRAYEVLSDP 58

Query: 121 KKRADYDR 128
           + RA YD+
Sbjct: 59  ETRARYDQ 66

Length = 374

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 72.5 bits (178), Expect = 2e-15
 Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 1/64 (1%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YEILG+   AT +EIK AY++L +  HPD   +++ E +  KF ++ EAYE LSDP+KRA
Sbjct: 7   YEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKE-AEQKFKEIQEAYEVLSDPQKRA 65

Query: 125 DYDR 128
            YDR
Sbjct: 66  MYDR 69

Length = 369

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 72.5 bits (178), Expect = 2e-15
 Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 9/81 (11%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y+ LG+ + A+ +EIK AYRKLAR LHPD  A   +  +  +F  + EA++ LSDP KR 
Sbjct: 12  YKELGVSSDASAEEIKKAYRKLARELHPD--ANPGDPAAEERFKAVSEAHDVLSDPAKRK 69

Query: 125 DYDRTL-------FRRRRPSG 138
           +YD T        F  RR  G
Sbjct: 70  EYDETRRLFAGGGFGGRRFDG 90

Length = 392

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 71.6 bits (175), Expect = 3e-15
 Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 3/64 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YE+LG+   A+  E+K AYRKLAR  HPDV   ++  ++  KF ++ EAY+TLSDP+K+A
Sbjct: 7   YEVLGVDRNASVDEVKKAYRKLARKYHPDV---NKAPDAEDKFKEVKEAYDTLSDPQKKA 63

Query: 125 DYDR 128
            YD+
Sbjct: 64  HYDQ 67

Length = 371

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 71.4 bits (175), Expect = 4e-15
 Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y++LG+   AT  EIK AYRKLAR  HPD  A   +  +  +F ++ EAY+ LSD KKR 
Sbjct: 12  YKVLGVPKDATEAEIKKAYRKLAREYHPD--ANKGDAKAEERFKEISEAYDVLSDEKKRK 69

Query: 125 DYD--RTLF 131
           +YD  R+LF
Sbjct: 70  EYDEARSLF 78

Length = 389

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 71.0 bits (174), Expect = 6e-15
 Identities = 33/65 (50%), Positives = 41/65 (63%), Gaps = 4/65 (6%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYK-FMKLHEAYETLSDPKKR 123
           Y ILG+   A+ +EIK AYRKLA   HPD   K+  +  A K F ++ EAYE LSD +KR
Sbjct: 4   YTILGVSKTASPEEIKKAYRKLAVKYHPD---KNPGDAEAEKRFKEVSEAYEVLSDAQKR 60

Query: 124 ADYDR 128
             YDR
Sbjct: 61  ESYDR 65

Length = 391

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 69.9 bits (171), Expect = 9e-15
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 3/72 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y I+G++     + IKTAYR+LAR  HPDV   S+  ++  +F ++ EA+E LSD ++RA
Sbjct: 7   YAIMGVKPTDDLKTIKTAYRRLARKYHPDV---SKEPDAEARFKEVAEAWEVLSDEQRRA 63

Query: 125 DYDRTLFRRRRP 136
           +YD+    R  P
Sbjct: 64  EYDQLWQHRNDP 75

Length = 306

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 69.5 bits (170), Expect = 2e-14
 Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 3/64 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YEILG+   A+ ++IK AYRKLA   HPD   K++  ++  KF ++ EAY  LSD +KRA
Sbjct: 8   YEILGLSKDASVEDIKKAYRKLAMKYHPD---KNKEPDAEEKFKEISEAYAVLSDAEKRA 64

Query: 125 DYDR 128
            YDR
Sbjct: 65  QYDR 68

Length = 377

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 67.9 bits (165), Expect = 2e-14
 Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 63  SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKK 122
             YEILG+   A+ +EIK AYRKLA   HPD       + +  KF +++EAYE LSDP++
Sbjct: 7   DYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGD-PKVAEEKFKEINEAYEILSDPER 65

Query: 123 RADYDR 128
           RA+YD+
Sbjct: 66  RAEYDK 71

Length = 237

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 68.0 bits (166), Expect = 5e-14
 Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 1/65 (1%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y+ILG+   A+ ++IK A+R+LA+  HPD+   ++ E +  KF ++ EAYE LSDP+KR 
Sbjct: 6   YKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAE-AEEKFKEISEAYEVLSDPQKRR 64

Query: 125 DYDRT 129
            YD+T
Sbjct: 65  QYDQT 69

Length = 365

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 68.3 bits (166), Expect = 5e-14
 Identities = 31/64 (48%), Positives = 46/64 (71%), Gaps = 3/64 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YE+LGI   A  QEIK A+RKLA+  HPD   +++  ++A  F +++EA + LS+PKKRA
Sbjct: 5   YEVLGIDRDADEQEIKKAFRKLAKKYHPD---RNKAPDAASIFAEINEANDVLSNPKKRA 61

Query: 125 DYDR 128
           +YD+
Sbjct: 62  NYDK 65

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 32/64 (50%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YE+LG+   A+  EIK AYRKLA   HPD      N  +  KF +  EAYE L D +KRA
Sbjct: 7   YEVLGVSRDASEDEIKKAYRKLALQYHPD--RNPDNPEAEQKFKEAAEAYEVLRDAEKRA 64

Query: 125 DYDR 128
            YDR
Sbjct: 65  RYDR 68

Length = 373

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 2/64 (3%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YEILG+   A+ +EIK +YRKLA   HPD      ++ +   F +  EAYE LSDPKKR 
Sbjct: 7   YEILGVTRDASEEEIKKSYRKLAMKYHPD--RNPGDKEAEELFKEAAEAYEVLSDPKKRG 64

Query: 125 DYDR 128
            YD+
Sbjct: 65  IYDQ 68

Length = 366

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 66.9 bits (163), Expect = 1e-13
 Identities = 32/64 (50%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YEILG+  GA+  EIK AYRK+A   HPD      N+ +   F +  EAYE L D  KRA
Sbjct: 6   YEILGLSKGASKDEIKKAYRKIAIKYHPD--KNKGNKEAESIFKEATEAYEVLIDDNKRA 63

Query: 125 DYDR 128
            YDR
Sbjct: 64  QYDR 67

Length = 365

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 65.7 bits (160), Expect = 3e-13
 Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y ILG+   A+  EIK A++KLAR  HPDV      E    KF +++EAY  LSDP+KR 
Sbjct: 7   YAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEE---KFKEINEAYTVLSDPEKRR 63

Query: 125 DYDR 128
            YD 
Sbjct: 64  IYDT 67

Length = 291

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 65.8 bits (160), Expect = 3e-13
 Identities = 34/66 (51%), Positives = 41/66 (62%), Gaps = 2/66 (3%)

Query: 63  SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKK 122
           S Y+ILG+   A  +EIK+AYRKLA   HPD      N+ S  KF +  EAYE L DPKK
Sbjct: 5   SYYDILGVSKSANDEEIKSAYRKLAIKYHPD--KNKGNKESEEKFKEATEAYEILRDPKK 62

Query: 123 RADYDR 128
           R  YD+
Sbjct: 63  RQAYDQ 68

Length = 372

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 64.8 bits (158), Expect = 7e-13
 Identities = 30/64 (46%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 64  LYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKR 123
           LYE+L +    T  EIK AYRKLA   HPD     +      KF ++  AYE LSDP+KR
Sbjct: 30  LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPE------KFKEISRAYEVLSDPEKR 83

Query: 124 ADYD 127
             YD
Sbjct: 84  KIYD 87

Length = 421

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 64.8 bits (158), Expect = 7e-13
 Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YE+LG+   A   EIK AYRKLA   HPD      N+ +   F +++EAYE LS+  KR 
Sbjct: 6   YEVLGVSRSADKDEIKKAYRKLALKYHPD--KNPDNKEAEEHFKEVNEAYEVLSNDDKRR 63

Query: 125 DYDR 128
            YD+
Sbjct: 64  RYDQ 67

Length = 397

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 64.6 bits (157), Expect = 9e-13
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YE+LG+   A+ QEI+ AYRKLA+  HPD+       +   K ++++EA + L D  KR 
Sbjct: 7   YEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHD---KMVEINEAADVLLDKDKRK 63

Query: 125 DYDR 128
            YD+
Sbjct: 64  QYDQ 67

Length = 372

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 63.7 bits (155), Expect = 2e-12
 Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSA-YKFMKLHEAYETLSDPKKR 123
           YE+LG+   AT  EIK AYRK A   HPD   K+  +  A  KF +  EAY+ LSDP KR
Sbjct: 8   YEVLGVSKTATVDEIKKAYRKKAIQYHPD---KNPGDKEAEEKFKEAAEAYDVLSDPDKR 64

Query: 124 ADYDR 128
           + YD+
Sbjct: 65  SRYDQ 69

Length = 386

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 58.9 bits (142), Expect = 9e-11
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y+ILG+   A+  ++K AY KLA+  HPD       E    KF +++ AY+ L D +KRA
Sbjct: 6   YQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEK---KFKEINAAYDVLKDEQKRA 62

Query: 125 DYDR 128
            YDR
Sbjct: 63  AYDR 66

Length = 372

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 55.1 bits (132), Expect = 2e-09
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 63  SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKK 122
           S YEIL ++  +  + IK +YRKLA   HPD  A  +     +K   ++EAY  LSD KK
Sbjct: 4   SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKL--INEAYGVLSDEKK 61

Query: 123 RADYDR 128
           RA YDR
Sbjct: 62  RALYDR 67

Length = 369

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNE-NSAY--KFMKLHEAYETLSDPK 121
           YEILGI    + ++IK  YR L+   HPD A    NE  S Y  K+  + +AY  L+D K
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160

Query: 122 KRADY 126
           +R +Y
Sbjct: 161 RRENY 165

Length = 610

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 64  LYEILGI---QTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDP 120
           LY +LG+   +T A   +I  A++K     HPD  A   N+     F  + +A E L D 
Sbjct: 45  LYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDR 104

Query: 121 KKRADYDRTLF 131
           K R  YD   F
Sbjct: 105 KLRLQYDSNDF 115

Length = 379

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 12/112 (10%)

Query: 18  NETHSQSQPTSVKFRPRPLRVSASACASTAERTRTHHHITSPGPGSL-YEILGIQTGATC 76
            E H + + ++ +     +   AS     +E   T        P +L Y+ILG+   A  
Sbjct: 536 AEEHVEEEISTAE---EHIEEPASDVQQDSEAAPTIEI-----PDTLFYDILGVGVNADM 587

Query: 77  QEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 128
           +EI   Y KLA   +P    +S NE   +KF K++EAY+ L D  K+  Y++
Sbjct: 588 KEISERYFKLAENYYP--PKRSGNE-GFHKFKKINEAYQILGDIDKKKMYNK 636

Length = 1136

>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 77  QEIKTAYRKLARVLHPDVAAKSQNENSAY-KFMKLHEAYETLSDPKKRADY 126
             ++  YR+L    HPD +  +Q + +A  +   L++AY TL DP +RA+Y
Sbjct: 6   SRLRKRYRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEY 56

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock [Protein fate, Protein folding and stabilization]. Length = 155

>gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional

 Score = 40.6 bits (95), Expect = 9e-05
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 77  QEIKTAYRKLARVLHPDV---AAKSQNENSAYKFMKLHEAYETLSDPKKRADY 126
            ++ T YR+LAR +HPD    A + +   +  +   L+EAY+TL  P +RA Y
Sbjct: 21  DQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARY 73

Length = 173

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPD-VAAK 97
           Y++LG+      QEIK AYRKL    HPD + AK
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAK 236

Length = 267

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.91
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.89
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.84
PRK14288	369	chaperone protein DnaJ; Provisional	99.83
PRK14296	372	chaperone protein DnaJ; Provisional	99.81
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.8
PRK14279	392	chaperone protein DnaJ; Provisional	99.8
PRK14286	372	chaperone protein DnaJ; Provisional	99.79
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.78
PRK14282	369	chaperone protein DnaJ; Provisional	99.78
PRK14287	371	chaperone protein DnaJ; Provisional	99.77
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.77
PRK14285	365	chaperone protein DnaJ; Provisional	99.77
PRK14295	389	chaperone protein DnaJ; Provisional	99.77
PRK14299	291	chaperone protein DnaJ; Provisional	99.77
PRK14278	378	chaperone protein DnaJ; Provisional	99.77
PRK14291	382	chaperone protein DnaJ; Provisional	99.77
PRK14283	378	chaperone protein DnaJ; Provisional	99.76
PRK14298	377	chaperone protein DnaJ; Provisional	99.76
PRK14276	380	chaperone protein DnaJ; Provisional	99.76
PRK14277	386	chaperone protein DnaJ; Provisional	99.76
PRK14280	376	chaperone protein DnaJ; Provisional	99.75
PRK14294	366	chaperone protein DnaJ; Provisional	99.75
PRK14301	373	chaperone protein DnaJ; Provisional	99.75
PRK14284	391	chaperone protein DnaJ; Provisional	99.75
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.75
PRK14297	380	chaperone protein DnaJ; Provisional	99.75
PRK14281	397	chaperone protein DnaJ; Provisional	99.75
PRK10767	371	chaperone protein DnaJ; Provisional	99.74
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.73
PRK14290	365	chaperone protein DnaJ; Provisional	99.73
PRK14300	372	chaperone protein DnaJ; Provisional	99.73
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.73
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.72
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.72
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.72
PRK14289	386	chaperone protein DnaJ; Provisional	99.72
PRK14293	374	chaperone protein DnaJ; Provisional	99.72
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.72
PRK14292	371	chaperone protein DnaJ; Provisional	99.71
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.7
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.7
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.66
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.64
PRK05014	171	hscB co-chaperone HscB; Provisional	99.62
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.62
PRK01356	166	hscB co-chaperone HscB; Provisional	99.61
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.6
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.6
PRK03578	176	hscB co-chaperone HscB; Provisional	99.59
PRK00294	173	hscB co-chaperone HscB; Provisional	99.58
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.57
PHA03102	153	Small T antigen; Reviewed	99.56
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.49
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.44
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.38
PRK01773	173	hscB co-chaperone HscB; Provisional	99.37
PTZ00100	116	DnaJ chaperone protein; Provisional	99.37
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.36
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.28
PHA02624	647	large T antigen; Provisional	99.27
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.26
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.18
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	99.06
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.4
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.3
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.25
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	98.24
KOG0431	453	consensus Auxilin-like protein and related protein	97.27
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.16
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.1
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	96.14
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	92.34
PF13446	62	RPT: A repeated domain in UCH-protein	89.68
KOG0724	335	consensus Zuotin and related molecular chaperones	88.59
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	82.0

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.2e-24  Score=185.25  Aligned_cols=73  Identities=45%  Similarity=0.682  Sum_probs=66.9

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q 030733           60 GPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRR  134 (172)
Q Consensus        60 ~~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~~  134 (172)
                      +.+|||+||||+++|+.+|||+|||+|+++||||+++.  .++++++|++|++||+||+||++|++||++.....
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g--~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~   74 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPG--DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGF   74 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCcccc
Confidence            36799999999999999999999999999999999764  58999999999999999999999999998876443

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=3e-23  Score=173.40  Aligned_cols=75  Identities=43%  Similarity=0.625  Sum_probs=68.8

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCC
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPS  137 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~~~~~  137 (172)
                      .+|||+||||+.+|+..|||+|||+|++++|||||++  .+.+.+.|+.|+.||+||+||++|+.||......-...
T Consensus        15 ~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpd--dp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~   89 (336)
T KOG0713|consen   15 GRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPD--DPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDE   89 (336)
T ss_pred             CCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccc
Confidence            5799999999999999999999999999999999775  68999999999999999999999999999997555433

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=4e-21  Score=161.91  Aligned_cols=74  Identities=43%  Similarity=0.636  Sum_probs=66.9

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCCCC
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSGS  139 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~~~~~~~  139 (172)
                      +..||+||||+++|+.+|||+|||+|+++|||||++.     +.++|++|.+||+||+||++|+.||+.....-..++.
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~   76 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-----AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGG   76 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCC
Confidence            5689999999999999999999999999999999764     7889999999999999999999999999766554443

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1.2e-20  Score=162.47  Aligned_cols=69  Identities=45%  Similarity=0.571  Sum_probs=63.2

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.  ...+.++|++|++||+||+||.+|+.||++..
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~--~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~   70 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAG--DKEAEEKFKLINEAYGVLSDEKKRALYDRYGK   70 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence            4699999999999999999999999999999999753  35688999999999999999999999998654

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=3.6e-20  Score=159.57  Aligned_cols=68  Identities=38%  Similarity=0.612  Sum_probs=62.7

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.   +.+.++|++|++||+||+||.+|+.||+...
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~---~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~   70 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS---PDAHDKMVEINEAADVLLDKDKRKQYDQFGH   70 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---chHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence            3699999999999999999999999999999999753   5688999999999999999999999998654

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.80  E-value=5.3e-20  Score=120.57  Aligned_cols=64  Identities=45%  Similarity=0.802  Sum_probs=59.5

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHH
Q 030733           63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYD  127 (172)
Q Consensus        63 ~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD  127 (172)
                      |||+||||+++++.++||++|+++++.+|||++.... ..+.+.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~-~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE-AEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH-HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh-hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            5899999999999999999999999999999976533 568899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=8.7e-20  Score=158.18  Aligned_cols=68  Identities=44%  Similarity=0.714  Sum_probs=63.1

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTL  130 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l  130 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.  .+.+.++|++|++||+||+||.+|+.||+..
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G   75 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPG--DPAAEERFKAVSEAHDVLSDPAKRKEYDETR   75 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ChHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence            4699999999999999999999999999999999753  3678899999999999999999999999975

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=2.1e-19  Score=154.83  Aligned_cols=69  Identities=49%  Similarity=0.677  Sum_probs=63.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.  .+.+.++|++|++||+||+||.+|+.||+...
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   71 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKG--NKESEEKFKEATEAYEILRDPKKRQAYDQFGK   71 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence            3699999999999999999999999999999999753  35688999999999999999999999998643

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.78  E-value=2.9e-19  Score=156.03  Aligned_cols=65  Identities=46%  Similarity=0.642  Sum_probs=59.7

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.      .++|++|++||+||+||.+|+.||....
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~------~e~F~~i~~AYevLsD~~kR~~YD~~G~   91 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD------PEKFKEISRAYEVLSDPEKRKIYDEYGE   91 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch------HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence            5699999999999999999999999999999998632      4799999999999999999999998654

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=3.3e-19  Score=153.43  Aligned_cols=70  Identities=46%  Similarity=0.748  Sum_probs=63.1

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.. ...+.++|++|++||+||+||.+|+.||....
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~   72 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN-RKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY   72 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc-hhHHHHHHHHHHHHHHHhcChhhHHHHhhcCc
Confidence            46999999999999999999999999999999997542 24578999999999999999999999998654

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=4.9e-19  Score=152.51  Aligned_cols=68  Identities=47%  Similarity=0.777  Sum_probs=62.4

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.   +.+.++|++|++||++|+||.+|+.||+...
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~---~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~   70 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA---PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGH   70 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCC
Confidence            3599999999999999999999999999999998653   5678899999999999999999999998653

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=4.8e-19  Score=144.32  Aligned_cols=69  Identities=43%  Similarity=0.612  Sum_probs=64.2

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..++|+||||+++++.++|||+||+|++++|||+++++  +++.++|++||+||+||+||.+|..||.++.
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~--P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~   98 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN--PEATDKFKEINTAYAILSDPTKRNVYDEYGE   98 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC--chhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence            45899999999999999999999999999999998763  7889999999999999999999999999853

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=6.1e-19  Score=151.64  Aligned_cols=69  Identities=46%  Similarity=0.657  Sum_probs=63.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.  .+.+.++|++|++||+||+|+.+|+.||.+..
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~   70 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKG--NKEAESIFKEATEAYEVLIDDNKRAQYDRFGH   70 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--CHHHHHHHHHHHHHHHHHcCcchhHHHHhcCc
Confidence            3699999999999999999999999999999999753  36678899999999999999999999998653

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=6.5e-19  Score=152.59  Aligned_cols=67  Identities=45%  Similarity=0.739  Sum_probs=61.9

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRT  129 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~  129 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.  ...+.++|++|++||+||+||.+|+.||+.
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~   74 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKG--DAKAEERFKEISEAYDVLSDEKKRKEYDEA   74 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCC--chhHHHHHHHHHHHHHHHCchhhHHHHHHH
Confidence            4699999999999999999999999999999999753  356889999999999999999999999983

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=7.2e-19  Score=147.04  Aligned_cols=68  Identities=44%  Similarity=0.649  Sum_probs=62.7

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|++++|||++++   ..+.++|++|++||++|+||.+|+.||....
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~   70 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS---PGAEEKFKEINEAYTVLSDPEKRRIYDTYGT   70 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence            4699999999999999999999999999999999753   5678899999999999999999999999654

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=6e-19  Score=152.29  Aligned_cols=66  Identities=48%  Similarity=0.678  Sum_probs=61.6

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTL  130 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l  130 (172)
                      .|||+||||+++|+.+|||+|||+|+++||||+++.   +.+.++|++|++||+||+||.+|+.||...
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~---~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G   68 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD---EEAQEKFKEISVAYEVLSDPEKRRIVDLGG   68 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc---HHHHHHHHHHHHHHHHhchhhhhhhhhccC
Confidence            589999999999999999999999999999999763   668899999999999999999999999854

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=6.5e-19  Score=152.27  Aligned_cols=68  Identities=47%  Similarity=0.724  Sum_probs=63.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.   +.+.++|++|++||+||+||.+|+.||....
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~   69 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN---PEAEEKFKEINEAYQVLSDPEKRKLYDQFGH   69 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence            4699999999999999999999999999999999764   5678899999999999999999999999764

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=7.6e-19  Score=151.66  Aligned_cols=68  Identities=47%  Similarity=0.719  Sum_probs=63.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.   +.+.++|++|++||++|+|+.+|+.||+...
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~   71 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE---EGAEEKFKEISEAYAVLSDDEKRQRYDQFGH   71 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence            5699999999999999999999999999999999753   5788999999999999999999999999654

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=6.3e-19  Score=152.10  Aligned_cols=68  Identities=46%  Similarity=0.702  Sum_probs=62.5

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.   ..+.++|++|++||+||+||.+|+.||+...
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   71 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE---PDAEEKFKEISEAYAVLSDAEKRAQYDRFGH   71 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC---hhHHHHHHHHHHHHHHhcchHhhhhhhhcCc
Confidence            4699999999999999999999999999999999753   5678899999999999999999999998653

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=6.4e-19  Score=152.23  Aligned_cols=68  Identities=44%  Similarity=0.708  Sum_probs=62.5

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.   ..+.++|++|++||+||+||.+|+.||.+..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~---~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   70 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE---PGAEEKYKEVQEAYETLSDPQKRAAYDQYGA   70 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence            3699999999999999999999999999999999763   5678899999999999999999999998653

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.2e-18  Score=150.89  Aligned_cols=69  Identities=48%  Similarity=0.775  Sum_probs=63.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.  ...++++|++|++||+||+||.+|+.||....
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~   72 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPG--DKEAEQKFKEINEAYEILSDPQKRAQYDQFGH   72 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCC--chHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence            3699999999999999999999999999999999753  35688899999999999999999999998653

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.4e-18  Score=149.88  Aligned_cols=67  Identities=46%  Similarity=0.745  Sum_probs=62.0

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      .|||+||||+++|+.+|||+|||+|+++||||+++.   +.+.++|++|++||+||+||.+|+.||....
T Consensus         4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~---~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~   70 (376)
T PRK14280          4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE---EGADEKFKEISEAYEVLSDDQKRAQYDQFGH   70 (376)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhccHhHHHHHHhcCc
Confidence            599999999999999999999999999999999753   5678899999999999999999999998643

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=2e-18  Score=148.46  Aligned_cols=69  Identities=45%  Similarity=0.643  Sum_probs=63.1

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.  .+.+.++|++|++||+||+||.+|+.||....
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~   71 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPG--DKEAEELFKEAAEAYEVLSDPKKRGIYDQYGH   71 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--chHHHHHHHHHHHHHHHhccHHHHHHHHhhcc
Confidence            4699999999999999999999999999999999753  35678899999999999999999999998754

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.6e-18  Score=149.42  Aligned_cols=69  Identities=46%  Similarity=0.664  Sum_probs=63.2

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.++||+|||+|++++|||+++.  ...+.++|++|++||+||+||.+|+.||.+..
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~   71 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPD--NPEAEQKFKEAAEAYEVLRDAEKRARYDRFGH   71 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCC--ChHHHHHHHHHHHHHHHhcchhhhhhhhhccc
Confidence            4699999999999999999999999999999999754  35688899999999999999999999998754

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=2e-18  Score=149.60  Aligned_cols=67  Identities=45%  Similarity=0.667  Sum_probs=62.2

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        63 ~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      |||+||||+++|+.+|||+|||+|+++||||+++.  ...+.++|++|++||+||+|+.+|+.||+...
T Consensus         2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   68 (391)
T PRK14284          2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPG--DAEAEKRFKEVSEAYEVLSDAQKRESYDRYGK   68 (391)
T ss_pred             CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence            89999999999999999999999999999999754  46688899999999999999999999998754

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=2.4e-18  Score=143.65  Aligned_cols=68  Identities=44%  Similarity=0.728  Sum_probs=64.7

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 030733           63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRR  133 (172)
Q Consensus        63 ~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~  133 (172)
                      |||+||||.++|+..|||+||++|+|+||||.+..   .++.++|++|.+|||||+|+++|..||..+...
T Consensus        44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~---~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD---KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC---cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            89999999999999999999999999999998765   489999999999999999999999999999865

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.6e-18  Score=149.75  Aligned_cols=69  Identities=45%  Similarity=0.721  Sum_probs=62.9

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.  .+.++++|++|++||+||+||.+|+.||+...
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~   71 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKG--NKEAEEKFKEINEAYQVLSDPQKKAQYDQFGT   71 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cHHHHHHHHHHHHHHHHhcCHhhhCchhhcCc
Confidence            3599999999999999999999999999999999753  35688999999999999999999999998643

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=2e-18  Score=149.87  Aligned_cols=69  Identities=42%  Similarity=0.634  Sum_probs=63.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|++++|||+++.  ...+.++|++|++||++|+|+.+|+.||....
T Consensus         2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~   70 (397)
T PRK14281          2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPD--NKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH   70 (397)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCC--chHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence            3599999999999999999999999999999999753  35678899999999999999999999998654

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=3.5e-18  Score=147.20  Aligned_cols=69  Identities=46%  Similarity=0.713  Sum_probs=62.8

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|++++|||+++.  ...+.++|++|++||++|+|+.+|+.||....
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~--~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~   71 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPG--DKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGH   71 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--cHHHHHHHHHHHHHHHHhcchhhhhHhhhccc
Confidence            4699999999999999999999999999999999753  35688899999999999999999999998654

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=7.3e-18  Score=140.57  Aligned_cols=75  Identities=43%  Similarity=0.578  Sum_probs=68.9

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCC
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPS  137 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~~~~~  137 (172)
                      ..|||+||||..+++..+|+++|+..++++||||+++  ++.+.+.|+.|.+||+||+|+..|+.||..+.....+.
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~--dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~   78 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPG--DPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ   78 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--ChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence            5699999999999999999999999999999999876  45599999999999999999999999999998666555

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=5.2e-18  Score=145.88  Aligned_cols=69  Identities=42%  Similarity=0.716  Sum_probs=62.4

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      .|||+||||+++|+.+|||+|||+|++++|||+++.. ...+.++|++|++||++|+|+.+|+.||....
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~   71 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN-KAEAEEKFKEISEAYEVLSDPQKRRQYDQTGT   71 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hhHHHHHHHHHHHHHHHhcChhhhhhhcccCC
Confidence            5999999999999999999999999999999997532 34688999999999999999999999998543

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=5.4e-18  Score=146.11  Aligned_cols=67  Identities=39%  Similarity=0.660  Sum_probs=61.6

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      .|||+||||+++|+.+|||+|||+|++++|||+++.   ..+.++|++|++||++|+|+.+|+.||....
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~   69 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA---KDAEKKFKEINAAYDVLKDEQKRAAYDRFGH   69 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---cCHHHHHHHHHHHHHHhhhHhHhhHHHhccc
Confidence            599999999999999999999999999999999653   4577899999999999999999999999643

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=8.2e-18  Score=145.30  Aligned_cols=71  Identities=41%  Similarity=0.617  Sum_probs=65.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFR  132 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~  132 (172)
                      .+.||+||||..+++..+||++||+|++++||||++. ..+++.++|++|+.||+||+||..|+.||....+
T Consensus         7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd-~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreq   77 (508)
T KOG0717|consen    7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPD-RIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQ   77 (508)
T ss_pred             hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCc-cHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHH
Confidence            4579999999999999999999999999999999765 3488999999999999999999999999977653

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.72  E-value=7e-18  Score=144.41  Aligned_cols=66  Identities=50%  Similarity=0.792  Sum_probs=61.1

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        63 ~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      |||+||||+++|+.++||+||++|++++|||+++   ...+.++|++|++||++|+|+.+|+.||....
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~---~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~   66 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK---DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGH   66 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC---CccHHHHHHHHHHHHHHhhChHHHHhhhhccc
Confidence            6999999999999999999999999999999975   35678899999999999999999999998654

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.72  E-value=1.4e-17  Score=107.39  Aligned_cols=59  Identities=49%  Similarity=0.756  Sum_probs=53.9

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChh
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPK  121 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~  121 (172)
                      .|||+||||+++++.++||++|+++++.+|||++... ...+.+.|.+|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~-~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD-KEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHHHcCCC
Confidence            3799999999999999999999999999999997643 4778899999999999999985

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=7.6e-18  Score=145.72  Aligned_cols=80  Identities=40%  Similarity=0.611  Sum_probs=70.3

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCccc-CCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCCCC
Q 030733           60 GPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAK-SQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSG  138 (172)
Q Consensus        60 ~~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~~~~~~  138 (172)
                      ++.+||.+|+|+++|+.+|||+|||++++.|||||..+ +.+..+++.|+.|.+|||||+||.+|+.||....++-.-.|
T Consensus         7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~g   86 (546)
T KOG0718|consen    7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTEG   86 (546)
T ss_pred             chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccccC
Confidence            35689999999999999999999999999999999874 44577889999999999999999999999999876554444


Q ss_pred             C
Q 030733          139 S  139 (172)
Q Consensus       139 ~  139 (172)
                      .
T Consensus        87 w   87 (546)
T KOG0718|consen   87 W   87 (546)
T ss_pred             c
Confidence            3

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=1.3e-17  Score=144.31  Aligned_cols=69  Identities=43%  Similarity=0.653  Sum_probs=63.3

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|++++|||+++.  .+.+.++|++|++||++|+||.+|+.||....
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~   72 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPG--DKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH   72 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--ChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence            4699999999999999999999999999999999764  35688999999999999999999999998654

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=9.9e-18  Score=144.54  Aligned_cols=68  Identities=44%  Similarity=0.714  Sum_probs=62.2

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|++++|||+++.   ..+.++|++|++||+||+||.+|+.||....
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~   69 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE---PGAEDRFKEINRAYEVLSDPETRARYDQFGE   69 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---cCHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence            3599999999999999999999999999999999753   4578899999999999999999999998654

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.72  E-value=1.1e-17  Score=140.86  Aligned_cols=66  Identities=41%  Similarity=0.734  Sum_probs=61.5

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTL  130 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l  130 (172)
                      .|||+||||+++++.+|||+|||+|++++|||+++.   ..+.++|++|++||++|+|+.+|+.||...
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~---~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g   69 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE---PDAEARFKEVAEAWEVLSDEQRRAEYDQLW   69 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence            599999999999999999999999999999999653   568889999999999999999999999864

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.4e-17  Score=143.48  Aligned_cols=67  Identities=48%  Similarity=0.704  Sum_probs=61.9

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      .|||+||||+++|+.++||+||++|++++|||+++.   ..+.++|++|++||++|+||.+|+.||....
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~---~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~   68 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE---KGAAEKFAQINEAYAVLSDAEKRAHYDRFGT   68 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---hhHHHHHHHHHHHHHHhcchhhhhhHhhcCC
Confidence            489999999999999999999999999999999753   5688999999999999999999999999643

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1.8e-17  Score=132.66  Aligned_cols=71  Identities=45%  Similarity=0.651  Sum_probs=66.5

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..++|+||||..+|+..+|++||++|++++|||+++..+..++.+.|++|+.||.||+|..+|+.||....
T Consensus        13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~   83 (264)
T KOG0719|consen   13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS   83 (264)
T ss_pred             ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence            45899999999999999999999999999999998877778899999999999999999999999998754

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.70  E-value=4.7e-17  Score=103.05  Aligned_cols=55  Identities=47%  Similarity=0.735  Sum_probs=50.9

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCC
Q 030733           63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSD  119 (172)
Q Consensus        63 ~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsd  119 (172)
                      |||+||||+++++.++||++|+++++++|||++...  ..+.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~--~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD--PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcC
Confidence            689999999999999999999999999999997543  6788999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.66  E-value=1.6e-16  Score=147.57  Aligned_cols=69  Identities=32%  Similarity=0.475  Sum_probs=63.2

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           60 GPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        60 ~~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ...+||+||||+++|+..+||+|||+|++++|||+++.   ..+.++|+.|++||+||+||.+|+.||....
T Consensus       571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~---~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~  639 (1136)
T PTZ00341        571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSG---NEGFHKFKKINEAYQILGDIDKKKMYNKFGY  639 (1136)
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHHhCCHHHHHHHhhccc
Confidence            36799999999999999999999999999999999764   2577899999999999999999999998654

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=4.2e-16  Score=121.87  Aligned_cols=70  Identities=46%  Similarity=0.689  Sum_probs=63.3

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 030733           60 GPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTL  130 (172)
Q Consensus        60 ~~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l  130 (172)
                      ...+||+||||.++++.+|||++|+++++++|||+++.... .+.+.|+.|++||++|+|+.+|+.||...
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~-~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPK-VAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchh-HHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            35689999999999999999999999999999999875332 58899999999999999999999999863

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.62  E-value=1e-15  Score=119.11  Aligned_cols=69  Identities=28%  Similarity=0.501  Sum_probs=60.4

Q ss_pred             CccccccCCCC--CCHHHHHHHHHHHHHhhCCCCcccCCC---hHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           63 SLYEILGIQTG--ATCQEIKTAYRKLARVLHPDVAAKSQN---ENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        63 ~~YevLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~~---~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      |||+||||++.  ++..+|+++|+++++++|||+......   ..+.+.+..||+||++|+||.+|+.|+..|.
T Consensus         2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~   75 (171)
T PRK05014          2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH   75 (171)
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence            89999999995  788999999999999999999764321   2356789999999999999999999998887

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=9.7e-16  Score=121.56  Aligned_cols=68  Identities=37%  Similarity=0.583  Sum_probs=62.2

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTL  130 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l  130 (172)
                      .-|+||||||+++++..|||++||+|++++||||.++.  ++.++.|..|++||+.|+|+..|+.|....
T Consensus        98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~--~~~e~~~~~I~KAY~aLTD~~sreN~ekYG  165 (230)
T KOG0721|consen   98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE--EGDEEFFEAIAKAYQALTDKKSRENWEKYG  165 (230)
T ss_pred             cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc--chhHHHHHHHHHHHHHhcchhhHHHHHHhC
Confidence            45899999999999999999999999999999997653  677788999999999999999999998764

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.61  E-value=9.9e-16  Score=118.62  Aligned_cols=70  Identities=27%  Similarity=0.405  Sum_probs=59.4

Q ss_pred             cCccccccCCCC--CCHHHHHHHHHHHHHhhCCCCcccC-CChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           62 GSLYEILGIQTG--ATCQEIKTAYRKLARVLHPDVAAKS-QNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        62 ~~~YevLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~-~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      .|||+||||++.  ++..+|+++|+++++++|||+.... ....+...+..||+||+||+||.+|+.|+..|.
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~   74 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ   74 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence            389999999996  7899999999999999999996531 112234568899999999999999999998885

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.60  E-value=1.3e-15  Score=128.85  Aligned_cols=72  Identities=40%  Similarity=0.628  Sum_probs=64.4

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCC-ChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           60 GPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQ-NENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        60 ~~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..+|||.||||.++|+..||.+|||+++.++|||-..+.+ +..++++|..|..|-+||+||++|+.||..-.
T Consensus       392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeD  464 (504)
T KOG0624|consen  392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGED  464 (504)
T ss_pred             ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCC
Confidence            4679999999999999999999999999999999765433 45688999999999999999999999998653

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.60  E-value=2e-15  Score=137.66  Aligned_cols=67  Identities=46%  Similarity=0.701  Sum_probs=62.1

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      .|||+||||+++|+.++||++||+|++++|||+++.   ..+.++|+.|++||++|+||.+|+.||....
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~---~eAeekFqeINEAYEVLSDP~KRa~YD~fG~   68 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA---PDAASIFAEINEANDVLSNPKKRANYDKYGH   68 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence            589999999999999999999999999999999654   5677899999999999999999999998765

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.59  E-value=5e-15  Score=115.68  Aligned_cols=72  Identities=28%  Similarity=0.406  Sum_probs=60.9

Q ss_pred             ccCccccccCCCC--CCHHHHHHHHHHHHHhhCCCCcccCCC---hHHHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 030733           61 PGSLYEILGIQTG--ATCQEIKTAYRKLARVLHPDVAAKSQN---ENSAYKFMKLHEAYETLSDPKKRADYDRTLFR  132 (172)
Q Consensus        61 ~~~~YevLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~~---~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~  132 (172)
                      ..|||+||||++.  ++..+|+++|+++++++|||+......   ..+.+.+..||+||++|+||.+|+.|+..|.+
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G   81 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRG   81 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcC
Confidence            4699999999985  689999999999999999999764322   12345578999999999999999999998873

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.58  E-value=5.6e-15  Score=115.05  Aligned_cols=72  Identities=31%  Similarity=0.467  Sum_probs=62.6

Q ss_pred             ccCccccccCCCC--CCHHHHHHHHHHHHHhhCCCCcccCC---ChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 030733           61 PGSLYEILGIQTG--ATCQEIKTAYRKLARVLHPDVAAKSQ---NENSAYKFMKLHEAYETLSDPKKRADYDRTLFR  132 (172)
Q Consensus        61 ~~~~YevLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~  132 (172)
                      ..|||++|||++.  ++..+|+++|+++++++|||+.....   ...+.+.+..||+||+||+||.+|+.|+..|.+
T Consensus         3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g   79 (173)
T PRK00294          3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSG   79 (173)
T ss_pred             CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence            5699999999996  67899999999999999999975432   234567899999999999999999999999873

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=3.5e-15  Score=129.07  Aligned_cols=70  Identities=31%  Similarity=0.496  Sum_probs=65.9

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRR  133 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~  133 (172)
                      ..|+|.||||+.+++.++||+.||+++..+|||||-   .+.+++.|+.|+.||++|+|+++|..||..+.+.
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~---~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke  303 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM---IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE  303 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC---ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence            569999999999999999999999999999999976   4899999999999999999999999999999754

>PHA03102 Small T antigen; Reviewed

Probab=99.56  E-value=2.9e-15  Score=114.30  Aligned_cols=64  Identities=20%  Similarity=0.290  Sum_probs=58.0

Q ss_pred             cCccccccCCCCC--CHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           62 GSLYEILGIQTGA--TCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        62 ~~~YevLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..+|+||||+++|  +.++||+|||++++++|||+.+      ..++|+.|++||++|+|+.+|..||....
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg------~~e~~k~in~Ay~~L~d~~~r~~yd~~g~   70 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG------DEEKMKELNTLYKKFRESVKSLRDLDGEE   70 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc------hhHHHHHHHHHHHHHhhHHHhccccccCC
Confidence            3579999999999  9999999999999999999843      34699999999999999999999998764

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=1.6e-14  Score=117.18  Aligned_cols=73  Identities=38%  Similarity=0.567  Sum_probs=66.1

Q ss_pred             CCCCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 030733           57 TSPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFR  132 (172)
Q Consensus        57 ~~~~~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~  132 (172)
                      .-++..|+|+||||.++++..||.+|||+|++++|||++++   ++..+.|+.|..||++|.|...|..||-.|..
T Consensus        28 LYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~---~e~k~~F~~iAtayeilkd~e~rt~ydyaldh  100 (329)
T KOG0722|consen   28 LYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD---PESKKLFVKIATAYEILKDNETRTQYDYALDH  100 (329)
T ss_pred             hcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC---chhhhhhhhhhcccccccchhhHHhHHHHhcC
Confidence            34567899999999999999999999999999999999876   44558999999999999999999999999864

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=1.2e-13  Score=118.86  Aligned_cols=72  Identities=46%  Similarity=0.614  Sum_probs=65.3

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRR  133 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~  133 (172)
                      .++||.||||..+++..|||++|+++++.+|||++... ..+++.+|++|.+||.+|+||.+|..||..-.-.
T Consensus       372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags-q~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle  443 (486)
T KOG0550|consen  372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS-QKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLE  443 (486)
T ss_pred             hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch-hHHHHHHHHHHHHHHHHhcCHHHHhhcccccchh
Confidence            46999999999999999999999999999999997654 4788889999999999999999999999776533

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=3e-13  Score=110.38  Aligned_cols=70  Identities=47%  Similarity=0.645  Sum_probs=64.3

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..++|+||+|.++++.++||+||+++++++|||+++.. ...+..+|++|.+||++|+|+.+|..||....
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc-hhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            45899999999999999999999999999999997766 56676799999999999999999999999887

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.37  E-value=1.8e-12  Score=100.99  Aligned_cols=70  Identities=23%  Similarity=0.306  Sum_probs=60.9

Q ss_pred             cCccccccCCCC--CCHHHHHHHHHHHHHhhCCCCcccCC---ChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           62 GSLYEILGIQTG--ATCQEIKTAYRKLARVLHPDVAAKSQ---NENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        62 ~~~YevLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      .|||++|||++.  .+..+|++.|++|++.+|||+.....   ...+.+....||+||.+|+||.+|+.|-..|.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence            489999999985  89999999999999999999975433   13345677899999999999999999999988

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.37  E-value=4.9e-13  Score=97.47  Aligned_cols=52  Identities=33%  Similarity=0.417  Sum_probs=46.4

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcC
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLS  118 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLs  118 (172)
                      ..++|+||||+++++.+|||++||+|++++|||+.      +..+.|++|++||++|.
T Consensus        64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg------Gs~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG------GSTYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC------CCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999999999999972      34567899999999985

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.36  E-value=7.6e-13  Score=109.59  Aligned_cols=59  Identities=34%  Similarity=0.465  Sum_probs=51.8

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCC-----ChHHHHHHHHHHHHHHHcCC
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQ-----NENSAYKFMKLHEAYETLSD  119 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-----~~~~~~~f~~I~~Ay~vLsd  119 (172)
                      ..++|+||||+++++.++||++||+|++++|||+.....     .+.+.++|++|++||++|+.
T Consensus       199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999964321     25678999999999999985

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.28  E-value=3.1e-12  Score=110.97  Aligned_cols=71  Identities=32%  Similarity=0.461  Sum_probs=63.8

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCccc---CCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAK---SQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      .-|+||||||..+++..+||++||+|..++||||.++   ....+-++.+++|++||+.|.|...|..|-.+..
T Consensus        97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt  170 (610)
T COG5407          97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT  170 (610)
T ss_pred             CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence            3489999999999999999999999999999999886   4456778899999999999999999999987643

>PHA02624 large T antigen; Provisional

Probab=99.27  E-value=8.5e-12  Score=112.60  Aligned_cols=60  Identities=25%  Similarity=0.430  Sum_probs=55.2

Q ss_pred             ccCccccccCCCCC--CHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHH
Q 030733           61 PGSLYEILGIQTGA--TCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADY  126 (172)
Q Consensus        61 ~~~~YevLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~Y  126 (172)
                      ..++|+||||+++|  +.++||+|||++++++|||+.      ++.+.|++|++||++|+|+.+|..|
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg------Gdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG------GDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC------CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            45799999999999  999999999999999999983      3457999999999999999999998

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.26  E-value=1.6e-11  Score=94.32  Aligned_cols=59  Identities=32%  Similarity=0.467  Sum_probs=51.1

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCCcccCC---ChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           73 GATCQEIKTAYRKLARVLHPDVAAKSQ---NENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        73 ~as~~eIk~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      +.+..+|+++|+++++++|||+.....   ...+...+..||+||++|+||.+|+.|+..|.
T Consensus         2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~   63 (157)
T TIGR00714         2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH   63 (157)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            357899999999999999999865432   23466789999999999999999999999998

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=5.2e-11  Score=93.84  Aligned_cols=68  Identities=29%  Similarity=0.399  Sum_probs=60.3

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 030733           60 GPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR  128 (172)
Q Consensus        60 ~~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~  128 (172)
                      -+.|+|+||.|.++.+.++||+.||+|++.+||||+++ +.+.+...|..|.+||.+|-|+..|...+.
T Consensus        51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~D-d~~rAqkAFdivkKA~k~l~n~~~rkr~~~  118 (250)
T KOG1150|consen   51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPD-DAERAQKAFDIVKKAYKLLENDKIRKRCLD  118 (250)
T ss_pred             cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcc-cHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            36799999999999999999999999999999999875 347888999999999999999986665443

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.3e-10  Score=95.40  Aligned_cols=73  Identities=32%  Similarity=0.393  Sum_probs=64.6

Q ss_pred             ccCccccccCCC---CCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 030733           61 PGSLYEILGIQT---GATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRR  133 (172)
Q Consensus        61 ~~~~YevLgv~~---~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~  133 (172)
                      ..|+|.+|||+.   .+.+.+|.++.++.+.+||||+............|++|++||+||+|+.+|..||.--+..
T Consensus        42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~a  117 (379)
T COG5269          42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDA  117 (379)
T ss_pred             hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccccc
Confidence            469999999986   5788999999999999999999766666778889999999999999999999999766543

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=3e-07  Score=74.42  Aligned_cols=56  Identities=32%  Similarity=0.692  Sum_probs=48.8

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHH-HcCCh
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYE-TLSDP  120 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~-vLsdp  120 (172)
                      ..+|.||||..+|+.++++.+|.+|++.+|||...   .+.+.++|.+|.+||. ||+..
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs---~~adaa~f~qideafrkvlq~~  103 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGS---EEADAARFIQIDEAFRKVLQEK  103 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCC---ccccHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999643   3667789999999999 77643

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=9e-07  Score=63.24  Aligned_cols=50  Identities=32%  Similarity=0.403  Sum_probs=42.9

Q ss_pred             cccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCCh
Q 030733           65 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDP  120 (172)
Q Consensus        65 YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp  120 (172)
                      -.||||.+.++.+.||+++|+++...|||+      .+....-..||||+++|...
T Consensus        59 ~lIL~v~~s~~k~KikeaHrriM~~NHPD~------GGSPYlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   59 ALILGVTPSLDKDKIKEAHRRIMLANHPDR------GGSPYLASKINEAKDLLEGT  108 (112)
T ss_pred             HHHhCCCccccHHHHHHHHHHHHHcCCCcC------CCCHHHHHHHHHHHHHHhcc
Confidence            469999999999999999999999999997      34444567899999999753

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=1.3e-06  Score=82.95  Aligned_cols=53  Identities=32%  Similarity=0.423  Sum_probs=45.6

Q ss_pred             ccCccccccCCCC----CCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcC
Q 030733           61 PGSLYEILGIQTG----ATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLS  118 (172)
Q Consensus        61 ~~~~YevLgv~~~----as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLs  118 (172)
                      ..+-|+||.|+-+    -..+.||++|++|+.+|||||+     ++-.++|..||+||+.|.
T Consensus      1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN-----PEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN-----PEGREMFERVNKAYELLS 1336 (2235)
T ss_pred             hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC-----chHHHHHHHHHHHHHHHH
Confidence            4467999999863    3458999999999999999996     466789999999999998

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=1.9e-06  Score=65.61  Aligned_cols=77  Identities=29%  Similarity=0.533  Sum_probs=61.5

Q ss_pred             ccCccccccCCC--CCCHHHHHHHHHHHHHhhCCCCcccC---CChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcC
Q 030733           61 PGSLYEILGIQT--GATCQEIKTAYRKLARVLHPDVAAKS---QNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRR  135 (172)
Q Consensus        61 ~~~~YevLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~---~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~~~  135 (172)
                      ..+||.+||...  ...++.++.-|....+++|||+....   ....+.+....||+||.+|.||.+|+.|-..|.+...
T Consensus         7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g~e~   86 (168)
T KOG3192|consen    7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKGQEQ   86 (168)
T ss_pred             HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCC
Confidence            458999998755  46777788799999999999984322   2235677889999999999999999999999986544


Q ss_pred             CC
Q 030733          136 PS  137 (172)
Q Consensus       136 ~~  137 (172)
                      .+
T Consensus        87 ~s   88 (168)
T KOG3192|consen   87 TS   88 (168)
T ss_pred             ch
Confidence            43

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=97.27  E-value=0.00036  Score=61.98  Aligned_cols=47  Identities=28%  Similarity=0.338  Sum_probs=33.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCCcccCCC-----hHHHHHHHHHHHHHHHc
Q 030733           71 QTGATCQEIKTAYRKLARVLHPDVAAKSQN-----ENSAYKFMKLHEAYETL  117 (172)
Q Consensus        71 ~~~as~~eIk~ayr~l~~~~HPDk~~~~~~-----~~~~~~f~~I~~Ay~vL  117 (172)
                      ..-++.++||++||+.++.+||||......     -.+++.|..+++|++..
T Consensus       397 tDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f  448 (453)
T KOG0431|consen  397 TDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF  448 (453)
T ss_pred             hhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence            334689999999999999999999876432     23445566666666543

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.00034  Score=54.46  Aligned_cols=56  Identities=38%  Similarity=0.525  Sum_probs=47.4

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCC-----ChHHHHHHHHHHHHHHHc
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQ-----NENSAYKFMKLHEAYETL  117 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-----~~~~~~~f~~I~~Ay~vL  117 (172)
                      .+.|.+||+.......+|+++|+++...+|||+.....     .+...+.+++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            57899999999999999999999999999999855332     145667889999999864

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.00056  Score=53.25  Aligned_cols=69  Identities=29%  Similarity=0.476  Sum_probs=54.6

Q ss_pred             CccccccCCCCC--CHHHHHHHHHHHHHhhCCCCcccCCCh---HHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           63 SLYEILGIQTGA--TCQEIKTAYRKLARVLHPDVAAKSQNE---NSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        63 ~~YevLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~---~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      +++.++|+....  ..+.++..|+.+.+.+|||+.......   ...+.+..++.||.+|.||.+|+.|-..+.
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~   75 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA   75 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence            455666666643  567899999999999999986543322   244678899999999999999999998887

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=96.14  E-value=0.0089  Score=44.42  Aligned_cols=53  Identities=25%  Similarity=0.325  Sum_probs=39.8

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChh
Q 030733           63 SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPK  121 (172)
Q Consensus        63 ~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~  121 (172)
                      .-..||+|++..+.++|.+.|.+|....+|++      .+....-..|..|.+.|....
T Consensus        59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~k------GGSfYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   59 EARQILNVKEELSREEIQKRYKHLFKANDPSK------GGSFYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             HHHHHHT--G--SHHHHHHHHHHHHHHT-CCC------TS-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHhccCCCc------CCCHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999996      466667778999999887544

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=92.34  E-value=0.32  Score=38.67  Aligned_cols=38  Identities=21%  Similarity=0.258  Sum_probs=30.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcC
Q 030733           71 QTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLS  118 (172)
Q Consensus        71 ~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLs  118 (172)
                      +++|+.|||.+|+.++..+|--|.          +.-..|..||+.|.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd~----------~~~~~IEaAYD~IL   38 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGDE----------KSREAIEAAYDAIL   38 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHH
Confidence            478999999999999999996662          23466899999543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>PF13446 RPT: A repeated domain in UCH-protein

Probab=89.68  E-value=0.74  Score=29.39  Aligned_cols=26  Identities=31%  Similarity=0.451  Sum_probs=24.1

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHH
Q 030733           63 SLYEILGIQTGATCQEIKTAYRKLAR   88 (172)
Q Consensus        63 ~~YevLgv~~~as~~eIk~ayr~l~~   88 (172)
                      +-|++|||+++.+.+.|..+|+....
T Consensus         6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    6 EAYEILGIDEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence            46999999999999999999999888

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=88.59  E-value=0.49  Score=40.15  Aligned_cols=57  Identities=26%  Similarity=0.306  Sum_probs=42.5

Q ss_pred             CCHHHHHHHHHHHHHhhCCCCccc--CCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 030733           74 ATCQEIKTAYRKLARVLHPDVAAK--SQNENSAYKFMKLHEAYETLSDPKKRADYDRTL  130 (172)
Q Consensus        74 as~~eIk~ayr~l~~~~HPDk~~~--~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l  130 (172)
                      ++..+|..+|+..++.+||++...  .......+.+++|.+||.+|.+...|...|...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~   62 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD   62 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence            467789999999999999997431  112245567999999999999866655555554

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=82.00  E-value=2.5  Score=30.64  Aligned_cols=47  Identities=15%  Similarity=0.312  Sum_probs=30.4

Q ss_pred             CCCHHHHHHHHHHHHHhhCCCCcccCC--ChHHHHHHHHHHHHHHHcCC
Q 030733           73 GATCQEIKTAYRKLARVLHPDVAAKSQ--NENSAYKFMKLHEAYETLSD  119 (172)
Q Consensus        73 ~as~~eIk~ayr~l~~~~HPDk~~~~~--~~~~~~~f~~I~~Ay~vLsd  119 (172)
                      ..+..+++.+.|...+++|||......  ...-++-++.|+.-.+.|..
T Consensus         5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~   53 (112)
T PF14687_consen    5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK   53 (112)
T ss_pred             hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence            345678999999999999999765422  12233445555555444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	172
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		1e-11
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		4e-11
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		1e-10
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		2e-09
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		4e-09
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		5e-09
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		5e-09
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		7e-09
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		7e-09
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		9e-09
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		1e-08
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		1e-08
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		1e-08
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		2e-08
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		4e-08
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		5e-08
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		6e-08
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		9e-08
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		1e-07
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		1e-05
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		2e-05
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		3e-05
2ys8_A	90	Solution Structure Of The Dnaj-Like Domain From Hum		5e-04

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 58  SPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETL 117
           S G  + YE+LG+Q  A+ ++IK AYRKLA   HPD    ++ E +  KF  + EAYE L
Sbjct: 5   SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNK-EEAEKKFKLVSEAYEVL 63
Query: 118 SDPKKRADYDRT 129
           SD KKR+ YDR 
Sbjct: 64  SDSKKRSLYDRA 75

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y ILG+Q     + IKTAYR+LAR  HPDV   S+  ++  KF  L EA+E L D ++RA
Sbjct: 31  YAILGVQPTDDLKTIKTAYRRLARKYHPDV---SKENDAEAKFKDLAEAWEVLKDEQRRA 87
Query: 125 DYDRTLFRRRRPS 137
           +YD+    R  P 
Sbjct: 88  EYDQLWQHRNDPG 100

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)
Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y++LG++  AT +E+K AYRKLA   HPD     +N N   KF ++ +AYE LSD KKR 
Sbjct: 9   YDVLGVKPNATQEELKKAYRKLALKYHPD-----KNPNEGEKFKQISQAYEVLSDAKKRE 63
Query: 125 DYDR 128
            YD+
Sbjct: 64  LYDK 67

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 5/64 (7%)
Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y++LG++  A+  E+K AYRK+A   HPD     +N + A +F ++ +AYE LSD KKR 
Sbjct: 11  YDVLGVKPDASDNELKKAYRKMALKFHPD-----KNPDGAEQFKQISQAYEVLSDEKKRQ 65
Query: 125 DYDR 128
            YD+
Sbjct: 66  IYDQ 69

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y I+G++     + IKTAYR+LAR  HPDV   S+  ++  +F ++ EA+E LSD ++RA
Sbjct: 8   YAIMGVKPTDDLKTIKTAYRRLARKYHPDV---SKEPDAEARFKEVAEAWEVLSDEQRRA 64
Query: 125 DYDR 128
           +YD+
Sbjct: 65  EYDQ 68

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 62  GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPK 121
           G  YEILG+  GA+ +++K AYR+LA   HPD   K+    +   F  +  AY  LS+P+
Sbjct: 7   GDYYEILGVSRGASDEDLKKAYRRLALKFHPD---KNHAPGATEAFKAIGTAYAVLSNPE 63
Query: 122 KRADYDR 128
           KR  YD+
Sbjct: 64  KRKQYDQ 70

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 62  GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPK 121
           G  Y+ILG+   A+ +EIK AY +LA+  HPD      +  +  KF +L EAYE LSD  
Sbjct: 7   GDYYQILGVPRNASQKEIKKAYYQLAKKYHPDT--NKDDPKAKEKFSQLAEAYEVLSDEV 64
Query: 122 KRADYD 127
           KR  YD
Sbjct: 65  KRKQYD 70

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 58  SPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETL 117
           S G    YE+L +   A+ + IK AYRKLA   HPD   +++ E +  +F ++ EAYE L
Sbjct: 5   SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENK-EEAERRFKQVAEAYEVL 63
Query: 118 SDPKKRADYDR 128
           SD KKR  YDR
Sbjct: 64  SDAKKRDIYDR 74

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y+ LG+  GA+ +EIK AYR+ A   HPD   K++   +  KF ++ EAY+ LSDP+KR 
Sbjct: 6   YQTLGLARGASDEEIKRAYRRQALRYHPD---KNKEPGAEEKFKEIAEAYDVLSDPRKRE 62
Query: 125 DYDR 128
            +DR
Sbjct: 63  IFDR 66

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y+ILG+   A+ ++IK A+ KLA   HPD   K+++ ++  KF ++ EAYETLSD  +R 
Sbjct: 10  YDILGVPKSASERQIKKAFHKLAMKYHPD---KNKSPDAEAKFREIAEAYETLSDANRRK 66
Query: 125 DYD 127
           +YD
Sbjct: 67  EYD 69

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 63  SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAY-KFMKLHEAYETLSDPK 121
             YEILG+   A  +EI+ AY++LA   HPD   ++Q +  A  KF ++ EAYE L+D +
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPD---RNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 122 KRADYDR 128
           KRA YD+
Sbjct: 61  KRAAYDQ 67

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 63  SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAY-KFMKLHEAYETLSDPK 121
             YEILG+   A  +EI+ AY++LA   HPD   ++Q +  A  KF ++ EAYE L+D +
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPD---RNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 122 KRADYDR 128
           KRA YD+
Sbjct: 61  KRAAYDQ 67

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 63  SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAY-KFMKLHEAYETLSDPK 121
             YEILG+   A  +EI+ AY++LA   HPD   ++Q +  A  KF ++ EAYE L+D +
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPD---RNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 122 KRADYDR 128
           KRA YD+
Sbjct: 61  KRAAYDQ 67

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y +LG+   A+  +IK AY+KLAR  HPD   K+++  +  +F+++ +AYE LS+ +KR 
Sbjct: 20  YRVLGVSRTASQADIKKAYKKLAREWHPD---KNKDPGAEDRFIQISKAYEILSNEEKRT 76
Query: 125 DYD 127
           +YD
Sbjct: 77  NYD 79

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 63  SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKK 122
           + Y +LG+   A+ +EI+ A++KLA  LHPD      N N+   F+K++ AYE L D   
Sbjct: 22  NFYSLLGVSKTASSREIRQAFKKLALKLHPD--KNPNNPNAHGDFLKINRAYEVLKDEDL 79
Query: 123 RADYDR 128
           R  YD+
Sbjct: 80  RKKYDK 85

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 63  SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKK 122
           SLY +LG+   AT  +IK +YRKLA   HPD      N  +A KF +++ A+  L+D  K
Sbjct: 18  SLYHVLGLDKNATSDDIKKSYRKLALKYHPD--KNPDNPEAADKFKEINNAHAILTDATK 75
Query: 123 RADYDR 128
           R  YD+
Sbjct: 76  RNIYDK 81

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 63  SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKK 122
           + Y +LG+   A+ +EI+ A++KLA  LHPD      N N+   F+K++ AYE L D   
Sbjct: 3   NFYSLLGVSKTASSREIRQAFKKLALKLHPD--KNPNNPNAHGDFLKINRAYEVLKDEDL 60
Query: 123 RADYDR 128
           R  YD+
Sbjct: 61  RKKYDK 66

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 64  LYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKR 123
           LY++LG+   A  QE+K  YRK A   HPD            KF ++ EA+E L+DP+KR
Sbjct: 10  LYDLLGVSPSANEQELKKGYRKAALKYHPDKPT-----GDTEKFKEISEAFEILNDPQKR 64
Query: 124 ADYDR 128
             YD+
Sbjct: 65  EIYDQ 69

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 63  SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKK 122
           S YEIL +   A+  +IK AYR+ A   HPD    ++ E +  KF ++ EAYE LSD  K
Sbjct: 3   SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNK-EFAEKKFKEVAEAYEVLSDKHK 61
Query: 123 RADYDR 128
           R  YDR
Sbjct: 62  REIYDR 67

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPD-VAAKSQNENSAYKFMKLHEAYETLSDPKKR 123
           Y+ILG++  A  QEI  AYRKLA   HPD    + + + +  KF+ +  A E LSDP+ R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXR 444
Query: 124 ADYD 127
             +D
Sbjct: 445 KKFD 448

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPD-VAAKSQNENSAYKFMKLHEAYETLSDPKKR 123
           Y+ILG++  A  QEI  AYRKLA   HPD    + + + +  KF+ +  A E LSDP+ R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444
Query: 124 ADYD 127
             +D
Sbjct: 445 KKFD 448

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 63  SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKK 122
           +LY++LG+ + AT  +IK AY +   + HPD    S +  +A +F ++ +AY  L     
Sbjct: 18  ALYDLLGVPSTATQAQIKAAYYRQCFLYHPD--RNSGSAEAAERFTRISQAYVVLGSATL 75
Query: 123 RADYDRTLF 131
           R  YDR L 
Sbjct: 76  RRKYDRGLL 84

>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras- Associated Protein Rap1 Length = 90

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 65 YEILGIQTGATCQEIKTAYRKLARVLHPD 93
          +++LG++ GA+  E+  AYRKLA +LHPD
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPD 58

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	2e-24
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	2e-24
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	1e-23
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	2e-23
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	2e-23
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	3e-23
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	3e-23
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	4e-23
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	6e-23
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	6e-23
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	7e-23
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	8e-23
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	1e-22
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	3e-22
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	4e-22
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	5e-22
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	1e-21
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	1e-21
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	1e-21
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	2e-21
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	3e-21
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	6e-21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-19
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-18
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	3e-17
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	3e-17
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	5e-15
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	2e-13
2guz_A	71	Mitochondrial import inner membrane translocase su	7e-13
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	1e-12
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	7e-12
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	3e-11
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	4e-09
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	2e-07

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 92.2 bits (229), Expect = 2e-24
 Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 4/104 (3%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDV----AAKSQNENSAYKFMKLHEAYETLSDP 120
           Y ILG    A   ++K  Y+KL  + HPD           E    KF+++ +A++ L + 
Sbjct: 13  YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72

Query: 121 KKRADYDRTLFRRRRPSGSPFAVSGVANTMATSSNSRFCAYSRR 164
           + + +YD         +  P         M+ +        S R
Sbjct: 73  ETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCR 116

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 89.6 bits (223), Expect = 2e-24
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 3/64 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y+ LG+  GA+ +EIK AYR+ A   HPD   K++   +  KF ++ EAY+ LSDP+KR 
Sbjct: 6   YQTLGLARGASDEEIKRAYRRQALRYHPD---KNKEPGAEEKFKEIAEAYDVLSDPRKRE 62

Query: 125 DYDR 128
            +DR
Sbjct: 63  IFDR 66

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 87.3 bits (217), Expect = 1e-23
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 5/65 (7%)

Query: 64  LYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKR 123
            Y++LG++  A+  E+K AYRK+A   HPD     +N + A +F ++ +AYE LSD KKR
Sbjct: 10  YYDVLGVKPDASDNELKKAYRKMALKFHPD-----KNPDGAEQFKQISQAYEVLSDEKKR 64

Query: 124 ADYDR 128
             YD+
Sbjct: 65  QIYDQ 69

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 87.7 bits (218), Expect = 2e-23
 Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 3/64 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y+ILG+   A+ ++IK A+ KLA   HPD   K+++ ++  KF ++ EAYETLSD  +R 
Sbjct: 10  YDILGVPKSASERQIKKAFHKLAMKYHPD---KNKSPDAEAKFREIAEAYETLSDANRRK 66

Query: 125 DYDR 128
           +YD 
Sbjct: 67  EYDT 70

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 87.3 bits (217), Expect = 2e-23
 Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YEILG+  GA+ +++K AYR+LA   HPD   K+    +   F  +  AY  LS+P+KR 
Sbjct: 10  YEILGVSRGASDEDLKKAYRRLALKFHPD---KNHAPGATEAFKAIGTAYAVLSNPEKRK 66

Query: 125 DYDR 128
            YD+
Sbjct: 67  QYDQ 70

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 87.0 bits (216), Expect = 3e-23
 Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 3/64 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y +LG+   A+  +IK AY+KLAR  HPD   K+++  +  +F+++ +AYE LS+ +KR 
Sbjct: 20  YRVLGVSRTASQADIKKAYKKLAREWHPD---KNKDPGAEDRFIQISKAYEILSNEEKRT 76

Query: 125 DYDR 128
           +YD 
Sbjct: 77  NYDH 80

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 92.7 bits (231), Expect = 3e-23
 Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y ILG+Q     + IKTAYR+LAR  HPDV   S+  ++  KF  L EA+E L D ++RA
Sbjct: 31  YAILGVQPTDDLKTIKTAYRRLARKYHPDV---SKENDAEAKFKDLAEAWEVLKDEQRRA 87

Query: 125 DYDRTLFRRRRPSGSPFAVSG 145
           +YD+    + R          
Sbjct: 88  EYDQ--LWQHRNDPGFGRQRQ 106

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 86.6 bits (215), Expect = 4e-23
 Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 64  LYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKR 123
           LY++LG+   A  QE+K  YRK A   HPD     +      KF ++ EA+E L+DP+KR
Sbjct: 10  LYDLLGVSPSANEQELKKGYRKAALKYHPD-----KPTGDTEKFKEISEAFEILNDPQKR 64

Query: 124 ADYDR 128
             YD+
Sbjct: 65  EIYDQ 69

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 86.3 bits (214), Expect = 6e-23
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 64  LYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKR 123
           LY++LG+ + AT  +IK AY +   + HPD    S +  +A +F ++ +AY  L     R
Sbjct: 19  LYDLLGVPSTATQAQIKAAYYRQCFLYHPD--RNSGSAEAAERFTRISQAYVVLGSATLR 76

Query: 124 ADYDR---TLFRRRRPSGSPFA 142
             YDR   +    R P   P +
Sbjct: 77  RKYDRGLLSDEDLRGPGSGPSS 98

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 86.5 bits (215), Expect = 6e-23
 Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 4/65 (6%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSA-YKFMKLHEAYETLSDPKKR 123
           YEILG+   A  +EI+ AY++LA   HPD   ++Q +  A  KF ++ EAYE L+D +KR
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPD---RNQGDKEAEAKFKEIKEAYEVLTDSQKR 62

Query: 124 ADYDR 128
           A YD+
Sbjct: 63  AAYDQ 67

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 86.3 bits (214), Expect = 7e-23
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDV----AAKSQNENSAYKFMKLHEAYETLSDP 120
           Y ILG    A   ++K  Y+KL  + HPD           E    KF+++ +A++ L + 
Sbjct: 19  YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 121 KKRADYDR 128
           + +  YD 
Sbjct: 79  ETKKKYDL 86

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 86.3 bits (214), Expect = 8e-23
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y +LG    ++ ++I   ++  A   HPD     +N  +   F KL +A E L++ + RA
Sbjct: 23  YTLLGCDELSSVEQILAEFKVRALECHPDK--HPENPKAVETFQKLQKAKEILTNEESRA 80

Query: 125 DYDRTLFRRRRPSGSPFAVSGVANTMATSSNS 156
            YD   +RR + S        + +++ TS  S
Sbjct: 81  RYDH--WRRSQMSMPFQQWEALNDSVKTSGPS 110

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 88.8 bits (220), Expect = 1e-22
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 4/65 (6%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSA-YKFMKLHEAYETLSDPKKR 123
           Y +LG+   A+ +EI+ A++KLA  LHPD   K+ N  +A   F+K++ AYE L D   R
Sbjct: 5   YSLLGVSKTASSREIRQAFKKLALKLHPD---KNPNNPNAHGDFLKINRAYEVLKDEDLR 61

Query: 124 ADYDR 128
             YD+
Sbjct: 62  KKYDK 66

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 84.8 bits (210), Expect = 3e-22
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 65  YEILGIQTGA-TCQEIKTAYRKLARVLHPDVAAKSQNENSA-YKFMKLHEAYETLSDPKK 122
           Y++L +       Q++  AYR LAR  HPD     + +  A  +F  +  AYETL D + 
Sbjct: 18  YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77

Query: 123 RADYDR 128
           + +YD 
Sbjct: 78  KTNYDY 83

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 84.8 bits (210), Expect = 4e-22
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 63  SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQ-NENSAYKFMKLHEAYETLSDPK 121
           SLY +LG+   AT  +IK +YRKLA   HPD   K+  N  +A KF +++ A+  L+D  
Sbjct: 18  SLYHVLGLDKNATSDDIKKSYRKLALKYHPD---KNPDNPEAADKFKEINNAHAILTDAT 74

Query: 122 KRADYDR 128
           KR  YD+
Sbjct: 75  KRNIYDK 81

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 83.4 bits (207), Expect = 5e-22
 Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 4/65 (6%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSA-YKFMKLHEAYETLSDPKKR 123
           Y+ILG+   A+ +EIK AY +LA+  HPD    ++++  A  KF +L EAYE LSD  KR
Sbjct: 10  YQILGVPRNASQKEIKKAYYQLAKKYHPD---TNKDDPKAKEKFSQLAEAYEVLSDEVKR 66

Query: 124 ADYDR 128
             YD 
Sbjct: 67  KQYDA 71

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 83.1 bits (206), Expect = 1e-21
 Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YE+LG+Q  A+ ++IK AYRKLA   HPD    ++ E    KF  + EAYE LSD KKR+
Sbjct: 12  YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEK-KFKLVSEAYEVLSDSKKRS 70

Query: 125 DYDR 128
            YDR
Sbjct: 71  LYDR 74

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 82.7 bits (205), Expect = 1e-21
 Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YE+L +   A+ + IK AYRKLA   HPD   +++ E    +F ++ EAYE LSD KKR 
Sbjct: 12  YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAER-RFKQVAEAYEVLSDAKKRD 70

Query: 125 DYDR 128
            YDR
Sbjct: 71  IYDR 74

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 83.2 bits (206), Expect = 1e-21
 Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           YEIL +   A+  +IK AYR+ A   HPD       E +  KF ++ EAYE LSD  KR 
Sbjct: 5   YEILDVPRSASADDIKKAYRRKALQWHPD-KNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63

Query: 125 DYDR 128
            YDR
Sbjct: 64  IYDR 67

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 82.9 bits (205), Expect = 2e-21
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 64  LYEILGIQTGA--TCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPK 121
           L ++LG++  A      ++ AY K  +  HPD   K  +E    K  K++  Y+ + D  
Sbjct: 10  LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD---KGGDEE---KMKKMNTLYKKMEDGV 63

Query: 122 KRADYDR 128
           K A    
Sbjct: 64  KYAHQPD 70

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 82.1 bits (203), Expect = 3e-21
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           +++LG++ GA+  E+  AYRKLA +LHPD   K     S   F  +  A   L    K  
Sbjct: 30  WDMLGVKPGASRDEVNKAYRKLAVLLHPD---KCVAPGSEDAFKAVVNARTALLKNIKSG 86

Query: 125 DYD 127
              
Sbjct: 87  PSS 89

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 83.4 bits (206), Expect = 6e-21
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 64  LYEILGIQTGATC--QEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPK 121
           L ++LG++  A      ++ AY K  +  HPD   K  +E    K  K++  Y+ + D  
Sbjct: 13  LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPD---KGGDEE---KMKKMNTLYKKMEDGV 66

Query: 122 KRADYDR--TLFRRRRPSGSPF 141
           K A        +       S  
Sbjct: 67  KYAHQPDFGGFWDATEVFASSL 88

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 81.3 bits (201), Expect = 8e-19
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAY-KFMKLHEAYETLSDPKKR 123
           Y+ILG++  A  QEI  AYRKLA   HPD     + +  A  KF+ +  A E LSDP+ R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444

Query: 124 ADYDR 128
             +D 
Sbjct: 445 KKFDD 449

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 81.3 bits (200), Expect = 1e-18
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 7/92 (7%)

Query: 50  TRTHHHITSPGPGSL-----YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSA 104
           +  HHH +S           Y +LG+   A+ +EI+ A++KLA  LHPD      N N+ 
Sbjct: 4   SHHHHHHSSGHIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPN--NPNAH 61

Query: 105 YKFMKLHEAYETLSDPKKRADYDRTLFRRRRP 136
             F+K++ AYE L D   R  YD+   +    
Sbjct: 62  GDFLKINRAYEVLKDEDLRKKYDKYGEKGLED 93

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 73.8 bits (181), Expect = 3e-17
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 65  YEILGIQTGATC--QEIKTAYRKLARVLHPDVAAKSQN---ENSAYKFMKLHEAYETLSD 119
           + + G+        Q +   ++ L R  HPD  A         +  +   +++A++TL  
Sbjct: 4   FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 120 PKKRADYDRTL 130
           P  RA+Y  +L
Sbjct: 64  PLMRAEYLLSL 74

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 68.1 bits (166), Expect = 5e-15
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 12/84 (14%)

Query: 56  ITSPGPGSLYEILGIQTGATC-------QEIKTAYRKLARVLHPDVAAKSQNENSAYKFM 108
           +      + YE+                  ++  YR+L    HPD+      +  + +  
Sbjct: 5   VQRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDM-----AQQGSEQSS 59

Query: 109 KLHEAYETLSDPKKRADYDRTLFR 132
            L++AY TL DP +R+ Y   L R
Sbjct: 60  TLNQAYHTLKDPLRRSQYMLKLLR 83

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 62.0 bits (151), Expect = 2e-13
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 4/64 (6%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
             ++         E K   R+L    HPD      ++ +   F  L      L    K+A
Sbjct: 19  TSVVEQAWKLPESERKKIIRRLYLKWHPD-KNPENHDIANEVFKHLQNEINRLE---KQA 74

Query: 125 DYDR 128
             D+
Sbjct: 75  FLDQ 78

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 59.7 bits (145), Expect = 7e-13
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 65  YEILGIQTGA-TCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKR 123
            +IL +     T +++K  +RK+    HPD         S +   K++EA + L      
Sbjct: 17  LQILNLTENTLTKKKLKEVHRKIMLANHPDKG------GSPFLATKINEAKDFLEKRGIS 70

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 59.2 bits (143), Expect = 1e-12
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 64  LYEILGIQTGA--TCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPK 121
           L E+L +          ++ AY++ + +LHPD   K  +        +L+  + T     
Sbjct: 13  LLELLKLPRQLWGDFGRMQQAYKQQSLLLHPD---KGGSHA---LMQELNSLWGTFKTEV 66

Query: 122 KRADYD 127
                +
Sbjct: 67  YNLRMN 72

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 59.9 bits (144), Expect = 7e-12
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 55  HITSPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAY-KFMKLHEA 113
           H       + ++ +G+    T +++K  YRK   V+HPD A     E  A   FM+L++A
Sbjct: 110 HTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDA 169

Query: 114 YETLSDPKKRADY 126
           +    +  ++  Y
Sbjct: 170 WSEFENQGQKPLY 182

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 58.6 bits (141), Expect = 3e-11
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 65  YEILGIQTGATC--QEIKTAYRKLARVLHPDVAAKSQN---ENSAYKFMKLHEAYETLSD 119
           + ++           +++  Y++L R++HPD  ++      + S      +++AY+TL  
Sbjct: 46  FSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLA 105

Query: 120 PKKRADYD 127
           P  R  Y 
Sbjct: 106 PLSRGLYL 113

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 50.4 bits (120), Expect = 4e-09
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 55  HITSPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYK-FMKLHEA 113
           H       + ++ +G+    T +++K  YRK   V+HP  A     E  A   FM+L++A
Sbjct: 26  HTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDA 85

Query: 114 YETLSD 119
           +    +
Sbjct: 86  WSEFEN 91

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 61  PGSLYEILGIQTGATCQEIKTAYRKLARVLHPD-----VAAKSQNENSAYKFMKLHEAYE 115
            GS ++ + +        ++ +Y++   +LHPD      A+ +Q   +   F  L EA++
Sbjct: 39  SGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWD 98

Query: 116 TLS 118
             +
Sbjct: 99  HFN 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.87
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.87
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.86
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.86
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.85
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.85
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.85
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.85
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.85
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.85
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.84
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.84
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.84
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.83
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.82
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.81
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.81
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.78
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.77
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.77
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.76
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.75
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.71
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.7
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.7
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.69
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.69
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.69
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.66
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.65
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.65
2guz_A	71	Mitochondrial import inner membrane translocase su	99.62
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.59
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.13
2guz_B	65	Mitochondrial import inner membrane translocase su	98.98
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	90.55

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.87  E-value=2.6e-22  Score=135.47  Aligned_cols=69  Identities=41%  Similarity=0.616  Sum_probs=63.3

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFR  132 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~  132 (172)
                      ..|||+||||+++++.++||++|++|++++|||+++.   +.+.+.|+.|++||++|+||.+|+.||..+..
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   70 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE---PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE   70 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC---TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCHHHHHHHHHHccc
Confidence            4689999999999999999999999999999999764   46788999999999999999999999987653

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=2.6e-22  Score=138.93  Aligned_cols=72  Identities=40%  Similarity=0.628  Sum_probs=65.5

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcC
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRR  135 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~~~  135 (172)
                      ..|||+||||+++++.++||++|++|++++|||+++.   +.+.+.|++|++||++|+||.+|+.||..+...-.
T Consensus         6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   77 (88)
T 2ctr_A            6 SGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS---PDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFT   77 (88)
T ss_dssp             CCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS---HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHT
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            5689999999999999999999999999999999763   67889999999999999999999999998764433

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=5.7e-22  Score=138.17  Aligned_cols=70  Identities=47%  Similarity=0.682  Sum_probs=64.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++++.++||++|++|++++|||+++.. .+.+.+.|++|++||++|+||.+|+.||..+.
T Consensus         8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   77 (92)
T 2dmx_A            8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDN-KEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC   77 (92)
T ss_dssp             CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSC-SHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred             CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCcc-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            45899999999999999999999999999999997642 36788999999999999999999999998865

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=2.6e-22  Score=141.89  Aligned_cols=69  Identities=33%  Similarity=0.598  Sum_probs=63.9

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..+||+||||+++++.++||++|++|++++|||+++.  .+.+.+.|++|++||+||+||.+|+.||..|.
T Consensus        16 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   84 (99)
T 2yua_A           16 RTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSG--SAEAAERFTRISQAYVVLGSATLRRKYDRGLL   84 (99)
T ss_dssp             SSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSS--CSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred             ccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            5689999999999999999999999999999999764  35788999999999999999999999999775

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.85  E-value=7.8e-22  Score=137.68  Aligned_cols=71  Identities=39%  Similarity=0.631  Sum_probs=63.2

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhhcCC
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRP  136 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~~~~  136 (172)
                      ..|||+||||+++++.++||++|++|++++|||+++.     ..+.|++|++||++|+||.+|+.||..+......
T Consensus         7 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~   77 (92)
T 2o37_A            7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTG-----DTEKFKEISEAFEILNDPQKREIYDQYGLEAARS   77 (92)
T ss_dssp             CCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTC-----CHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----hHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence            5689999999999999999999999999999999753     2458999999999999999999999988755443

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=8.8e-22  Score=133.21  Aligned_cols=68  Identities=40%  Similarity=0.672  Sum_probs=63.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++++.++||++|++|++++|||++..   +.+.+.|++|++||++|+||.+|+.||..+.
T Consensus         6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   73 (78)
T 2ctp_A            6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA---PGATEAFKAIGTAYAVLSNPEKRKQYDQFGS   73 (78)
T ss_dssp             SCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS---HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            5689999999999999999999999999999999754   6788999999999999999999999998754

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.85  E-value=1.3e-21  Score=135.49  Aligned_cols=70  Identities=36%  Similarity=0.558  Sum_probs=64.1

Q ss_pred             CCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           59 PGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        59 ~~~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ....|||+||||+++++.++||++|++|++++|||+++.   +.+.+.|++|++||++|+||.+|..||..+.
T Consensus        14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   83 (88)
T 2cug_A           14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD---PGAEDRFIQISKAYEILSNEEKRTNYDHYGS   83 (88)
T ss_dssp             SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS---TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence            346799999999999999999999999999999999764   5678899999999999999999999998754

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.85  E-value=5.8e-22  Score=138.45  Aligned_cols=71  Identities=27%  Similarity=0.492  Sum_probs=64.3

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCC----ChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQ----NENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++++.++||++|++|++++|||+++...    .+.+.+.|++|++||+||+||.+|+.||..|.
T Consensus        15 ~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             CSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            569999999999999999999999999999999976321    25677899999999999999999999999886

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=8.9e-22  Score=133.40  Aligned_cols=69  Identities=43%  Similarity=0.654  Sum_probs=63.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++++.++||++|++|++++|||+++.  .+.+.+.|++|++||++|+||.+|+.||..+.
T Consensus         6 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   74 (79)
T 2dn9_A            6 SGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKD--DPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGS   74 (79)
T ss_dssp             CSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSS--CTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence            5689999999999999999999999999999999764  35678899999999999999999999998653

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=2.9e-21  Score=139.37  Aligned_cols=72  Identities=26%  Similarity=0.396  Sum_probs=65.6

Q ss_pred             CccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 030733           60 GPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRR  133 (172)
Q Consensus        60 ~~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~  133 (172)
                      ...|||+||||+++++.++||++|++|++++|||+++.  .+.+.+.|++|++||++|+||.+|+.||..+...
T Consensus        18 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~   89 (112)
T 2ctq_A           18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPE--NPKAVETFQKLQKAKEILTNEESRARYDHWRRSQ   89 (112)
T ss_dssp             CCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTT--CSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhc
Confidence            46799999999999999999999999999999999764  2468899999999999999999999999998743

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=3.3e-21  Score=131.45  Aligned_cols=70  Identities=43%  Similarity=0.600  Sum_probs=63.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++++.++||++|++|++++|||+++.. .+.+.+.|++|++||++|+||.+|+.||..+.
T Consensus         8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   77 (82)
T 2ej7_A            8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN-KEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS   77 (82)
T ss_dssp             SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTT-HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred             CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            46899999999999999999999999999999997542 24678899999999999999999999998653

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.84  E-value=3.6e-21  Score=136.18  Aligned_cols=71  Identities=42%  Similarity=0.578  Sum_probs=64.1

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRR  133 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~  133 (172)
                      .|||+||||+++++.++||++|++|++++|||+++.. .+.+.+.|++|++||++|+||.+|+.||..+...
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~   72 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDN-KEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREG   72 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSC-CHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCcc-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            3899999999999999999999999999999997642 4678899999999999999999999999987643

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.84  E-value=8.8e-21  Score=136.27  Aligned_cols=72  Identities=40%  Similarity=0.578  Sum_probs=64.9

Q ss_pred             CCCccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           58 SPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        58 ~~~~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      .....+||+||||+++++.++||++|++|++++|||+++.  .+.+.+.|++|++||++|+||.+|+.||....
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~--~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~   84 (109)
T 2ctw_A           13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPD--NPEAADKFKEINNAHAILTDATKRNIYDKYGS   84 (109)
T ss_dssp             TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTT--CHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--cHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence            3446799999999999999999999999999999999764  36788999999999999999999999998654

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.83  E-value=8.1e-21  Score=126.95  Aligned_cols=65  Identities=42%  Similarity=0.668  Sum_probs=59.4

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTL  130 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l  130 (172)
                      ..+||+||||+++++.++||++|++|++++|||+++.     ..+.|++|++||++|+||.+|+.||...
T Consensus         7 ~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~YD~~g   71 (73)
T 2och_A            7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD-----GAEQFKQISQAYEVLSDEKKRQIYDQGG   71 (73)
T ss_dssp             CCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT-----CHHHHHHHHHHHHHHTSHHHHHHHHHTC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC-----HHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            5689999999999999999999999999999998753     2578999999999999999999999853

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.82  E-value=8.2e-21  Score=136.24  Aligned_cols=72  Identities=32%  Similarity=0.498  Sum_probs=65.2

Q ss_pred             CccCccccccCCCCC-CHHHHHHHHHHHHHhhCCCCccc-CCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           60 GPGSLYEILGIQTGA-TCQEIKTAYRKLARVLHPDVAAK-SQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        60 ~~~~~YevLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~-~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ...|||+||||++++ +.++||++|++|++++|||+++. ...+.+.+.|++|++||++|+||.+|+.||..+.
T Consensus        13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~   86 (109)
T 2qsa_A           13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD   86 (109)
T ss_dssp             TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            467999999999999 99999999999999999999763 2336678899999999999999999999999886

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.81  E-value=3e-21  Score=137.23  Aligned_cols=71  Identities=39%  Similarity=0.630  Sum_probs=64.1

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhh
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRR  133 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~  133 (172)
                      ..|||+||||+++++.++||++|++|++++|||+++.  .+.+.+.|++|++||++|+||.+|+.||..+...
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   72 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG--DKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA   72 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTT--TCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--cHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhh
Confidence            4689999999999999999999999999999999764  2467789999999999999999999999877643

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.81  E-value=3.2e-20  Score=140.75  Aligned_cols=74  Identities=26%  Similarity=0.499  Sum_probs=65.7

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCC----hHHHHHHHHHHHHHHHcCChhHHHHHHHHHHhhc
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQN----ENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRR  134 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~----~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~~~  134 (172)
                      ..|||+||||+++++.++||++|++|++++||||++....    +.+.+.|++|++||++|+||.+|+.||..+....
T Consensus         9 ~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~   86 (155)
T 2l6l_A            9 KKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDD   86 (155)
T ss_dssp             CSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHHH
T ss_pred             CCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchhh
Confidence            5689999999999999999999999999999999875432    3467899999999999999999999999987543

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.78  E-value=4.1e-19  Score=140.79  Aligned_cols=71  Identities=21%  Similarity=0.401  Sum_probs=62.7

Q ss_pred             ccCccccccCCCC--CCHHHHHHHHHHHHHhhCCCCcccCCC---hHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTG--ATCQEIKTAYRKLARVLHPDVAAKSQN---ENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~~---~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++  ++.++||++||+|++++|||+++....   ..+.+.|+.|++||+||+||.+|+.||..+.
T Consensus        42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~  117 (207)
T 3bvo_A           42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH  117 (207)
T ss_dssp             TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence            5699999999986  789999999999999999999875321   2356789999999999999999999999886

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=9e-20  Score=126.76  Aligned_cols=61  Identities=33%  Similarity=0.509  Sum_probs=56.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA  124 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~  124 (172)
                      ..|||+||||+++++.++||++|++|++++|||+++.   +.+.+.|++|++||++|+|+.+|+
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~   86 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA---PGSEDAFKAVVNARTALLKNIKSG   86 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC---TTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCccccc
Confidence            4699999999999999999999999999999999764   567889999999999999998774

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.76  E-value=7.4e-19  Score=137.57  Aligned_cols=69  Identities=38%  Similarity=0.643  Sum_probs=63.1

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFR  132 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~  132 (172)
                      .|||+||||+++++.++||++||+|++++|||+++.  .+.+.++|+.|++||++|+||.+|+.||.....
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~--~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~   70 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPN--NPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK   70 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTT--CTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccc
Confidence            489999999999999999999999999999999764  356888999999999999999999999997653

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.75  E-value=7.1e-19  Score=135.67  Aligned_cols=69  Identities=23%  Similarity=0.428  Sum_probs=62.1

Q ss_pred             CccccccCCCCC--CHHHHHHHHHHHHHhhCCCCcccCCC---hHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           63 SLYEILGIQTGA--TCQEIKTAYRKLARVLHPDVAAKSQN---ENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        63 ~~YevLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~---~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      |||+||||++++  +..+||++||+|++++|||+++....   ..+.+.|+.|++||+||+||.+|+.||..+.
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~   75 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence            799999999998  99999999999999999999875332   2456799999999999999999999999886

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.71  E-value=6.5e-19  Score=148.39  Aligned_cols=68  Identities=44%  Similarity=0.707  Sum_probs=0.0

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++|+.+|||+|||+|++++|||+++.   +.+.++|++|++||++|+||.+|+.||..+.
T Consensus        27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~---~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~   94 (329)
T 3lz8_A           27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE---NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ   94 (329)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC---hHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence            4699999999999999999999999999999999764   4678899999999999999999999998754

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.70  E-value=2.4e-19  Score=129.84  Aligned_cols=62  Identities=26%  Similarity=0.389  Sum_probs=56.8

Q ss_pred             ccCccccccCCCCCCH--HHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 030733           61 PGSLYEILGIQTGATC--QEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR  128 (172)
Q Consensus        61 ~~~~YevLgv~~~as~--~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~  128 (172)
                      ..++|+||||+++++.  ++||++||+|++++|||+++.      .++|++|++||+||+||.+|+.||.
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~------~e~f~~I~~AYevL~d~~~R~~~~~   70 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDGVKYAHQPD   70 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT------TTTTHHHHHHHHHHHHHHHSCCSSC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc------HHHHHHHHHHHHHHCCHHHHHHhhh
Confidence            3589999999999998  999999999999999999654      3689999999999999999999984

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.70  E-value=3.6e-18  Score=118.33  Aligned_cols=62  Identities=16%  Similarity=0.137  Sum_probs=54.9

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKR  123 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R  123 (172)
                      ..++|+||||.++++.++||++|++|++++|||+++.. .+.+.+.|++|++||++|+|...|
T Consensus        15 ~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~-~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN-HDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC-HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-hHHHHHHHHHHHHHHHHHHhhccc
Confidence            46899999999999999999999999999999997642 256889999999999999987554

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.69  E-value=7.2e-18  Score=131.10  Aligned_cols=66  Identities=29%  Similarity=0.551  Sum_probs=59.6

Q ss_pred             ccCccccc------cCCC-CCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEIL------GIQT-GATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevL------gv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||      |+++ +++..+||++||+|++++|||+++.     +.+.|+.|++||+||+||.+|+.||..|.
T Consensus        10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-----a~~~f~~i~~AY~vL~dp~~R~~Yd~~l~   82 (181)
T 3uo3_A           10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-----GSEQSSTLNQAYHTLKDPLRRSQYMLKLL   82 (181)
T ss_dssp             SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-----CSSGGGSHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-----HHHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence            56999999      4665 8999999999999999999999754     55689999999999999999999999994

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.69  E-value=4.5e-18  Score=115.52  Aligned_cols=58  Identities=21%  Similarity=0.331  Sum_probs=52.5

Q ss_pred             cCccccccCCCC--CCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHH
Q 030733           62 GSLYEILGIQTG--ATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRAD  125 (172)
Q Consensus        62 ~~~YevLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~  125 (172)
                      .++|+||||+++  ++.++||++||+|++++|||+++      ..+.|++|++||++|+|+.+|..
T Consensus        11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~------~~~~f~~i~~AYe~L~~~~~r~~   70 (79)
T 1faf_A           11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG------SHALMQELNSLWGTFKTEVYNLR   70 (79)
T ss_dssp             HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC------CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC------CHHHHHHHHHHHHHHhhHHHHHH
Confidence            479999999999  99999999999999999999853      24789999999999999988765

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.69  E-value=4.3e-18  Score=132.19  Aligned_cols=65  Identities=26%  Similarity=0.466  Sum_probs=58.4

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCCh-HHHHHHHHHHHHHHHcCChhHHHHH
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNE-NSAYKFMKLHEAYETLSDPKKRADY  126 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~-~~~~~f~~I~~Ay~vLsdp~~R~~Y  126 (172)
                      .++|+||||+++++.++||++||++++++||||++....+ .+.+.|+.|++||++|+|+.+|+.|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            5899999999999999999999999999999998753322 3788999999999999999999876

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.66  E-value=2.8e-18  Score=132.42  Aligned_cols=64  Identities=25%  Similarity=0.347  Sum_probs=56.1

Q ss_pred             ccCccccccCCCCCC--HHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGAT--CQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTL  130 (172)
Q Consensus        61 ~~~~YevLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l  130 (172)
                      ..++|+||||+++++  .++||+|||++++++|||+++.      .++|++|++||++|+||.+|+.||...
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~------~e~F~~I~~AYevLsdp~kR~~YD~~G   75 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDGVKYAHQPDFG   75 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C------CTTTTHHHHHHHHHHHHHHHHTSCGGG
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC------HHHHHHHHHHHHHhCCHHHHHHHhccC
Confidence            358999999999998  6999999999999999999654      368999999999999999999999865

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.65  E-value=5e-17  Score=116.20  Aligned_cols=60  Identities=15%  Similarity=0.237  Sum_probs=52.2

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCC-----hHHHHHHHHHHHHHHHcCChh
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQN-----ENSAYKFMKLHEAYETLSDPK  121 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~-----~~~~~~f~~I~~Ay~vLsdp~  121 (172)
                      ..+||+|||++. ++.++||++||++++++||||++....     ..+.++|+.|++||++|+|+.
T Consensus        40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            469999999996 999999999999999999999764221     246789999999999999985

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.65  E-value=4.8e-17  Score=113.40  Aligned_cols=58  Identities=24%  Similarity=0.426  Sum_probs=51.4

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCC-hHHHHHHHHHHHHHHHcCC
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQN-ENSAYKFMKLHEAYETLSD  119 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~-~~~~~~f~~I~~Ay~vLsd  119 (172)
                      .++|++|||.+.++.++||+|||++++++||||++.... ..+.+.|+.|++||+||.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            479999999999999999999999999999999875332 3578899999999999964

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.62  E-value=4.4e-17  Score=108.37  Aligned_cols=57  Identities=25%  Similarity=0.306  Sum_probs=50.0

Q ss_pred             ccCccccccCCC-CCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHH
Q 030733           61 PGSLYEILGIQT-GATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKR  123 (172)
Q Consensus        61 ~~~~YevLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R  123 (172)
                      ..++|+||||++ +++.++||++||+|++++|||+.+      ..+.|++|++||++|+|+..|
T Consensus        13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g------~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG------SPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC------CHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC------CHHHHHHHHHHHHHHhhhhhc
Confidence            357999999999 799999999999999999999842      345899999999999987654

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.59  E-value=1.3e-16  Score=146.01  Aligned_cols=70  Identities=37%  Similarity=0.630  Sum_probs=40.5

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFR  132 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~  132 (172)
                      ..|||+||||+++|+.++||+|||+|++++|||+++.  .+.+.++|++|++||++|+||.+|+.||.....
T Consensus        20 ~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~--~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~   89 (780)
T 3apo_A           20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPN--NPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK   89 (780)
T ss_dssp             ---CHHHHTCCTTCCHHHHHHHHCC-------------------------CTHHHHHHSHHHHHHHTTC---
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ChHHHHHHHHHHHHHHHHcChHHHHHHHhhccc
Confidence            5699999999999999999999999999999999753  356788999999999999999999999987653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.13  E-value=2.4e-11  Score=101.19  Aligned_cols=67  Identities=40%  Similarity=0.626  Sum_probs=55.4

Q ss_pred             cCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCC-ChHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 030733           62 GSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQ-NENSAYKFMKLHEAYETLSDPKKRADYDR  128 (172)
Q Consensus        62 ~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~  128 (172)
                      .++|.+||+...++.++|+++|+++++++|||+.+... .+.+.+.|+.|++||++|+|+.+|..||.
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            48999999999999999999999999999999875421 24578899999999999999999999996

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.98  E-value=2.6e-10  Score=74.28  Aligned_cols=51  Identities=24%  Similarity=0.210  Sum_probs=45.0

Q ss_pred             CccccccCCCC---CCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCC
Q 030733           63 SLYEILGIQTG---ATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSD  119 (172)
Q Consensus        63 ~~YevLgv~~~---as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsd  119 (172)
                      .-|.||||+++   ++.++|+++||+|+..+|||+      .+.......|++|+++|..
T Consensus         5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDk------GGS~yl~~ki~~Ake~l~~   58 (65)
T 2guz_B            5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEK------GGSFYLQSKVYRAAERLKW   58 (65)
T ss_dssp             HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGG------TCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCC------CCCHHHHHHHHHHHHHHHH
Confidence            35889999999   999999999999999999997      4556678899999999864

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=90.55  E-value=0.17  Score=45.24  Aligned_cols=46  Identities=22%  Similarity=0.270  Sum_probs=36.1

Q ss_pred             ccCccccccCCCCCCH--HHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATC--QEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYET  116 (172)
Q Consensus        61 ~~~~YevLgv~~~as~--~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~v  116 (172)
                      ..+||.|||++.+...  .+|+++||++++..+++          .+++..|..|+.|
T Consensus       628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----------RHRYTLVDMANKV  675 (681)
T ss_dssp             CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----------HHHHHHHHHHHHH
T ss_pred             CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----------HHHHHHHHHhccc
Confidence            4569999999776654  77999999999965555          2578888888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	172
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	2e-16
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	6e-16
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	9e-16
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	1e-15
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	3e-14
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	4e-14
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	1e-12
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-11

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.2 bits (166), Expect = 2e-16
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYK----FMKLHEAYETLSDP 120
           Y ILG    A   ++K  Y+KL  + HPD  +      +  +    F+++ +A++ L + 
Sbjct: 19  YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 121 KKRADYDRTLFRRRRPSG 138
           + +  YD    +R  PS 
Sbjct: 79  ETKKKYDL---QRSGPSS 93

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 66.6 bits (162), Expect = 6e-16
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 65  YEILGIQTGATC--QEIKTAYRKLARVLHPDVAAKSQNENSAY---KFMKLHEAYETLSD 119
           + + G+        Q +   ++ L R  HPD  A            +   +++A++TL  
Sbjct: 4   FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 120 PKKRADYDRTL 130
           P  RA+Y  +L
Sbjct: 64  PLMRAEYLLSL 74

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 66.2 bits (161), Expect = 9e-16
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 2/65 (3%)

Query: 64  LYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKR 123
            YEILG+   A  +EI+ AY++LA   HPD      ++ +  KF ++ EAYE L+D +KR
Sbjct: 5   YYEILGVSKTAEEREIRKAYKRLAMKYHPDRN--QGDKEAEAKFKEIKEAYEVLTDSQKR 62

Query: 124 ADYDR 128
           A YD+
Sbjct: 63  AAYDQ 67

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.5 bits (162), Expect = 1e-15
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 52  THHHITSPGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFM-KL 110
           T H +   G  + ++ +G+    T +++K  YRK   V+HPD A     E  A     +L
Sbjct: 24  TMHTVLWAGE-TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMEL 82

Query: 111 HEAYETLSDPKKRADY 126
           ++A+    +  ++  Y
Sbjct: 83  NDAWSEFENQGQKPLY 98

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (151), Expect = 3e-14
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 3/64 (4%)

Query: 65  YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRA 124
           Y+ LG+  GA+ +EIK AYR+ A   HPD   K++   +  KF ++ EAY+ LSDP+KR 
Sbjct: 6   YQTLGLARGASDEEIKRAYRRQALRYHPD---KNKEPGAEEKFKEIAEAYDVLSDPRKRE 62

Query: 125 DYDR 128
            +DR
Sbjct: 63  IFDR 66

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 62.3 bits (151), Expect = 4e-14
 Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 8/78 (10%)

Query: 53  HHHITSPGPGSLYEILGIQTGA--TCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKL 110
              ++      L E+L +          ++ AY++ + +LHPD         S     +L
Sbjct: 2   DRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG------SHALMQEL 55

Query: 111 HEAYETLSDPKKRADYDR 128
           +  + T          + 
Sbjct: 56  NSLWGTFKTEVYNLRMNL 73

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (141), Expect = 1e-12
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 53  HHHITSPGPG--SLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKL 110
           HHH+   G     +  ++         E K   R+L    HPD   ++ +  +   F  L
Sbjct: 5   HHHLVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANE-VFKHL 63

Query: 111 HEAYETLSDPKKRADYDRTLFRRRR 135
                 L   +K+A  D+   R  R
Sbjct: 64  QNEINRL---EKQAFLDQNADRASR 85

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 56.0 bits (134), Expect = 2e-11
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 8/68 (11%)

Query: 64  LYEILGIQTGATC--QEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPK 121
           L ++LG++  A      ++ AY K  +  HP             K  K++  Y+ + D  
Sbjct: 10  LMDLLGLERSAWGNIPLMRKAYLKKCKEFHP------DKGGDEEKMKKMNTLYKKMEDGV 63

Query: 122 KRADYDRT 129
           K A     
Sbjct: 64  KYAHQPDF 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.89
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.85
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.79
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.77
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.72
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.68
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.63

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2.7e-23  Score=138.56  Aligned_cols=68  Identities=41%  Similarity=0.664  Sum_probs=62.4

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTL  130 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l  130 (172)
                      .+|||+||||+++|+.++||++|+++++++|||+++.  .+.+.+.|+.|++||+||+||.+|..||...
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~--~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g   69 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG--DKEAEAKFKEIKEAYEVLTDSQKRAAYDQYG   69 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTT--TCHHHHHHHHHHHHHHHTTSSHHHHHHHHHT
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHhC
Confidence            4699999999999999999999999999999999764  3567788999999999999999999999864

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.9e-23  Score=137.85  Aligned_cols=69  Identities=41%  Similarity=0.616  Sum_probs=62.8

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFR  132 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~~  132 (172)
                      .+|||+||||+++++.++||++|+++++++|||++..   +.+.+.|+.|++||+||+||.+|+.||+.+..
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~---~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~   70 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE---PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE   70 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC---TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccc---hhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhh
Confidence            5699999999999999999999999999999998754   56778899999999999999999999986543

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.5e-22  Score=140.38  Aligned_cols=71  Identities=27%  Similarity=0.498  Sum_probs=63.7

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCC----hHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQN----ENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~----~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      ..|||+||||+++++.++||++|++|++++|||++.....    ..+.+.|+.|++||+||+||.+|+.||..+.
T Consensus        15 ~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~   89 (94)
T d1wjza_          15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             CSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             ccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccC
Confidence            5699999999999999999999999999999999765432    4567889999999999999999999999854

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.7e-20  Score=123.93  Aligned_cols=69  Identities=23%  Similarity=0.432  Sum_probs=60.0

Q ss_pred             CccccccCCCC--CCHHHHHHHHHHHHHhhCCCCcccCC---ChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 030733           63 SLYEILGIQTG--ATCQEIKTAYRKLARVLHPDVAAKSQ---NENSAYKFMKLHEAYETLSDPKKRADYDRTLF  131 (172)
Q Consensus        63 ~~YevLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~---~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~l~  131 (172)
                      |||+||||++.  ++.++||++|+++++++|||+.....   ...+.+.|+.|++||+||+||.+|+.|+..|.
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l~   75 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence            79999999985  55899999999999999999976433   23466789999999999999999999998775

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.77  E-value=3.9e-21  Score=137.47  Aligned_cols=63  Identities=25%  Similarity=0.397  Sum_probs=57.0

Q ss_pred             ccCccccccCCCCC--CHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHHH
Q 030733           61 PGSLYEILGIQTGA--TCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRT  129 (172)
Q Consensus        61 ~~~~YevLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~~  129 (172)
                      ..+||+||||+++|  +.++||+||++|++++||||++.      .++|++|++||+||+|+.+|+.||..
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~------~e~F~~I~~AY~vLsd~~kR~~YD~~   71 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDGVKYAHQPDF   71 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT------TTTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh------HHHHHHHHHHHHHhCCHHHHHHHhcc
Confidence            45899999999998  78899999999999999999764      24799999999999999999999954

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.72  E-value=2.8e-19  Score=119.86  Aligned_cols=62  Identities=18%  Similarity=0.285  Sum_probs=55.8

Q ss_pred             ccCccccccCCCCC--CHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 030733           61 PGSLYEILGIQTGA--TCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR  128 (172)
Q Consensus        61 ~~~~YevLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~  128 (172)
                      ..++|+||||++++  +.++||+||+++++++|||+.+.      .+.|++||+||++|+|+.+|..||.
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~------~e~~~~in~Ay~~L~d~~~r~~~~~   73 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS------HALMQELNSLWGTFKTEVYNLRMNL   73 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC------HHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC------HHHHHHHHHHHHHHCCHHHHHHHcc
Confidence            45899999999987  89999999999999999998532      3589999999999999999999874

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=3e-18  Score=119.24  Aligned_cols=66  Identities=24%  Similarity=0.441  Sum_probs=58.8

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCC-hHHHHHHHHHHHHHHHcCChhHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQN-ENSAYKFMKLHEAYETLSDPKKRADY  126 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~-~~~~~~f~~I~~Ay~vLsdp~~R~~Y  126 (172)
                      ..++|++|||...++.++||++|+++++.+|||++..... ..+.+.|+.|++||++|+||.+|+.|
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            4578999999999999999999999999999999775433 45778999999999999999999876

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.8e-17  Score=113.05  Aligned_cols=64  Identities=19%  Similarity=0.194  Sum_probs=54.9

Q ss_pred             ccCccccccCCCCCCHHHHHHHHHHHHHhhCCCCcccCCChHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 030733           61 PGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR  128 (172)
Q Consensus        61 ~~~~YevLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~~~~f~~I~~Ay~vLsdp~~R~~YD~  128 (172)
                      -.++|+||||..+++.+|||+||++|++++|||+++.. .+.+.+.|+.|++||++|++   +..||.
T Consensus        15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~~---~~~~d~   78 (88)
T d1iura_          15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN-HDIANEVFKHLQNEINRLEK---QAFLDQ   78 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC-HHHHHHHHHHHHHHHHHHHH---HTTCSS
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccch-hhHHHHHHHHHHHHHHHHHH---HHHhhc
Confidence            35899999999999999999999999999999997653 46688999999999999964   444443