Citrus Sinensis ID: 030756

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVNINHELTHLK
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEccccccHHHHcHHHHHHHHHHccccccEEEEEEEcEcccccccccccHHHHHHHHccccHHHHHHHHHHHHHHccccEcccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHccHHHHccc
Coil and Loop (DISEMBL)
maqsvsssagkkliridvssdtvcpwcfvgkrnlDKAIAsskdqydfeirwhpfflnpsapkegvnkkdfyenkfgsqnqGIIARMTEVFRGLGLeynmsgltgntldSHRLLYLAGQQGLDKQHNLAEELFLGYFtqgkyigdkcayfsfdefffffpslVNINHELTHLK
Flexible Loop (DISEMBL)
maqsvsssagkkliridvssdtvcPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENkfgsqnqgiIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVNINHELTHLK
Low Complexity Region (SEG)
MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYfsfdefffffPSLVNINHELTHLK
Disordered region (IsUnstruct)
************LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPS*****VNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVNINHEL****
Disordered Region (DISOPRED)
****************DVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKF***********TEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVNINHELTHLK
Disordered Region (DISEMBL)
**********KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVNINHELTHLK
Disordered Region (DISPRO)
***********KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVNI********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVNINHELTHLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
P39598	200	Uncharacterized protein Y	yes	no	0.703	0.605	0.290	2e-06

>sp|P39598|YWBO_BACSU Uncharacterized protein YwbO OS=Bacillus subtilis (strain 168) GN=ywbO PE=4 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 14  IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
           + I V SD VCP+CFVGK   ++AI       D E+ W PF L PS P   ++  +    
Sbjct: 3   VHIKVYSDYVCPFCFVGKAAFEEAIKGK----DVEVEWMPFELRPS-PSPQLDPVNDPSK 57

Query: 74  KFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFL 133
           ++  Q    I  M E    LG+E N   ++ +             +  +K H     +F 
Sbjct: 58  QYMWQTS--IQPMAE---KLGVEINFPNVSPHPYTDLAFEGFHFAKEYNKGHEYNTRVFQ 112

Query: 134 GYFTQGKYIGD 144
            +F + + IGD
Sbjct: 113 AFFQEDQNIGD 123

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
224120676	217	predicted protein [Populus trichocarpa]	0.843	0.668	0.820	1e-68
255569918	217	protein disulfide oxidoreductase, putati	0.843	0.668	0.820	3e-68
298204452	250	unnamed protein product [Vitis vinifera]	0.843	0.58	0.820	4e-68
225451823	217	PREDICTED: uncharacterized protein ywbO	0.843	0.668	0.820	7e-68
15241578	217	DSBA oxidoreductase family protein [Arab	0.843	0.668	0.703	3e-59
449438729	218	PREDICTED: uncharacterized protein YwbO-	0.843	0.665	0.726	2e-58
449476397	259	PREDICTED: uncharacterized protein YwbO-	0.843	0.559	0.726	3e-58
297801728	217	DSBA oxidoreductase family protein [Arab	0.843	0.668	0.675	5e-58
356526550	213	PREDICTED: uncharacterized protein ywbO-	0.813	0.657	0.728	1e-57
242033733	241	hypothetical protein SORBIDRAFT_01g01511	0.837	0.597	0.724	2e-57

>gi|224120676|ref|XP_002330924.1| predicted protein [Populus trichocarpa] gi|222873118|gb|EEF10249.1| predicted protein [Populus trichocarpa]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 119/145 (82%), Positives = 136/145 (93%)

Query: 1   MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSA 60
           MA+SVS++ GKKL+RIDVSSDTVCPWCFVGKRNLDKAIA+SKD++DFEI+WHPFFLNPSA
Sbjct: 1   MAESVSNNTGKKLVRIDVSSDTVCPWCFVGKRNLDKAIAASKDRFDFEIKWHPFFLNPSA 60

Query: 61  PKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQG 120
           PKEGVNK DFY  KFGS+ +GI+ARMTE+F+GLGLEYN+SGLTGNTLDSHRL+  AGQQG
Sbjct: 61  PKEGVNKLDFYREKFGSRAEGILARMTEIFKGLGLEYNLSGLTGNTLDSHRLINFAGQQG 120

Query: 121 LDKQHNLAEELFLGYFTQGKYIGDK 145
           LDKQH LAEELFLGYFTQ KY+GD+
Sbjct: 121 LDKQHKLAEELFLGYFTQAKYVGDR 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569918|ref|XP_002525922.1| protein disulfide oxidoreductase, putative [Ricinus communis] gi|223534751|gb|EEF36442.1| protein disulfide oxidoreductase, putative [Ricinus communis]

 Score =  262 bits (670), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 119/145 (82%), Positives = 134/145 (92%)

Query: 1   MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSA 60
           M++S++SS+GKKLIRIDVSSDTVCPWCFVGKRNLDKA+A+SKD++DFEI+WHPFFLNPSA
Sbjct: 1   MSESITSSSGKKLIRIDVSSDTVCPWCFVGKRNLDKAVAASKDRFDFEIKWHPFFLNPSA 60

Query: 61  PKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQG 120
           PKEGVNK  +Y  KFGS+  GIIARMTEVFRGLGLEYN+SGLTGNTLDSHRL+  AGQQG
Sbjct: 61  PKEGVNKLQYYREKFGSRTDGIIARMTEVFRGLGLEYNISGLTGNTLDSHRLINFAGQQG 120

Query: 121 LDKQHNLAEELFLGYFTQGKYIGDK 145
           LDKQH L EELFLGYFTQ KYIGD+
Sbjct: 121 LDKQHKLVEELFLGYFTQAKYIGDR 145

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204452|emb|CBI16932.3| unnamed protein product [Vitis vinifera]

 Score =  262 bits (669), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 119/145 (82%), Positives = 135/145 (93%)

Query: 1   MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSA 60
           MAQS  SS GKKLI+ID+SSDTVCPWCFVGKRNLDKAIASS+DQ+DFE+RWHPFFLNPSA
Sbjct: 34  MAQSEGSSTGKKLIQIDISSDTVCPWCFVGKRNLDKAIASSQDQFDFELRWHPFFLNPSA 93

Query: 61  PKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQG 120
           PKEG+NK +FY+NKFG +++ I ARMTEVFRGLGL+YN+SGLTGNTLDSHRL+Y AG+QG
Sbjct: 94  PKEGINKIEFYKNKFGPRSEQIAARMTEVFRGLGLQYNLSGLTGNTLDSHRLIYFAGKQG 153

Query: 121 LDKQHNLAEELFLGYFTQGKYIGDK 145
           LDKQHNL EEL LGYFTQGKYIGD+
Sbjct: 154 LDKQHNLVEELCLGYFTQGKYIGDR 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451823|ref|XP_002281555.1| PREDICTED: uncharacterized protein ywbO [Vitis vinifera]

 Score =  261 bits (667), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 119/145 (82%), Positives = 135/145 (93%)

Query: 1   MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSA 60
           MAQS  SS GKKLI+ID+SSDTVCPWCFVGKRNLDKAIASS+DQ+DFE+RWHPFFLNPSA
Sbjct: 1   MAQSEGSSTGKKLIQIDISSDTVCPWCFVGKRNLDKAIASSQDQFDFELRWHPFFLNPSA 60

Query: 61  PKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQG 120
           PKEG+NK +FY+NKFG +++ I ARMTEVFRGLGL+YN+SGLTGNTLDSHRL+Y AG+QG
Sbjct: 61  PKEGINKIEFYKNKFGPRSEQIAARMTEVFRGLGLQYNLSGLTGNTLDSHRLIYFAGKQG 120

Query: 121 LDKQHNLAEELFLGYFTQGKYIGDK 145
           LDKQHNL EEL LGYFTQGKYIGD+
Sbjct: 121 LDKQHNLVEELCLGYFTQGKYIGDR 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241578|ref|NP_198706.1| DSBA oxidoreductase family protein [Arabidopsis thaliana] gi|9758068|dbj|BAB08647.1| frnE protein-like [Arabidopsis thaliana] gi|27754699|gb|AAO22793.1| putative frnE protein [Arabidopsis thaliana] gi|28394079|gb|AAO42447.1| putative frnE protein [Arabidopsis thaliana] gi|332006990|gb|AED94373.1| DSBA oxidoreductase family protein [Arabidopsis thaliana]

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 102/145 (70%), Positives = 130/145 (89%)

Query: 1   MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSA 60
           MA+S S++A KKLI+IDVSSD+VCPWCFVGK+NLDKAI +SKDQY+FEIRW PFFL+PSA
Sbjct: 1   MAESASNTASKKLIQIDVSSDSVCPWCFVGKKNLDKAIEASKDQYNFEIRWRPFFLDPSA 60

Query: 61  PKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQG 120
           PKEGV+KK+FY  K+G++ QG+ ARM+EVF+GLGLE++ +GLTGN+LDSHRL++  G+Q 
Sbjct: 61  PKEGVSKKEFYLQKYGNRYQGMFARMSEVFKGLGLEFDTAGLTGNSLDSHRLIHYTGKQA 120

Query: 121 LDKQHNLAEELFLGYFTQGKYIGDK 145
            +KQH L EELF+GYFTQGK+IGD+
Sbjct: 121 PEKQHTLVEELFIGYFTQGKFIGDR 145

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438729|ref|XP_004137140.1| PREDICTED: uncharacterized protein YwbO-like [Cucumis sativus]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/146 (72%), Positives = 129/146 (88%), Gaps = 1/146 (0%)

Query: 1   MAQSVSS-SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPS 59
           MA+SV S +  KKLI+ID+SSDTVCPWCFVGK+NLDKAI++S+DQYDFE+ WHPF LNP+
Sbjct: 1   MAESVGSRNMDKKLIQIDISSDTVCPWCFVGKKNLDKAISASQDQYDFELNWHPFQLNPT 60

Query: 60  APKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQ 119
           APKEGV K ++Y +KFG Q++ + ARM EVFRGLGL+Y+ SGLTGNTL+SH+L+YLAGQQ
Sbjct: 61  APKEGVVKTEYYRSKFGIQSEQMEARMAEVFRGLGLDYDTSGLTGNTLESHKLIYLAGQQ 120

Query: 120 GLDKQHNLAEELFLGYFTQGKYIGDK 145
           GL KQH+L EEL LGYFTQGKYIGD+
Sbjct: 121 GLGKQHDLVEELCLGYFTQGKYIGDR 146

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476397|ref|XP_004154726.1| PREDICTED: uncharacterized protein YwbO-like [Cucumis sativus]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/146 (72%), Positives = 129/146 (88%), Gaps = 1/146 (0%)

Query: 1   MAQSVSS-SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPS 59
           MA+SV S +  KKLI+ID+SSDTVCPWCFVGK+NLDKAI++S+DQYDFE+ WHPF LNP+
Sbjct: 42  MAESVGSRNMDKKLIQIDISSDTVCPWCFVGKKNLDKAISASQDQYDFELNWHPFQLNPT 101

Query: 60  APKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQ 119
           APKEGV K ++Y +KFG Q++ + ARM EVFRGLGL+Y+ SGLTGNTL+SH+L+YLAGQQ
Sbjct: 102 APKEGVVKTEYYRSKFGIQSEQMEARMAEVFRGLGLDYDTSGLTGNTLESHKLIYLAGQQ 161

Query: 120 GLDKQHNLAEELFLGYFTQGKYIGDK 145
           GL KQH+L EEL LGYFTQGKYIGD+
Sbjct: 162 GLGKQHDLVEELCLGYFTQGKYIGDR 187

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297801728|ref|XP_002868748.1| DSBA oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297314584|gb|EFH45007.1| DSBA oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  228 bits (582), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 98/145 (67%), Positives = 129/145 (88%)

Query: 1   MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSA 60
           MA+S S++  +KLI+IDVSSD+VCPWCFVGK+NLDKAI +SKDQY+FEIRW PFFL+PSA
Sbjct: 1   MAESASNTGSRKLIQIDVSSDSVCPWCFVGKKNLDKAIEASKDQYNFEIRWRPFFLDPSA 60

Query: 61  PKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQG 120
           PK+GV+KK+FY  K+G++ +G+ ARM+E+F+GLGLE++ +GLTGN+LDSHRL++  G+Q 
Sbjct: 61  PKDGVSKKEFYRQKYGNRYEGMFARMSEIFKGLGLEFDTAGLTGNSLDSHRLIHYTGKQA 120

Query: 121 LDKQHNLAEELFLGYFTQGKYIGDK 145
            DKQH L EELF+GYFTQGK+IGD+
Sbjct: 121 PDKQHKLVEELFIGYFTQGKFIGDR 145

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526550|ref|XP_003531880.1| PREDICTED: uncharacterized protein ywbO-like [Glycine max]

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 102/140 (72%), Positives = 125/140 (89%)

Query: 5   VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEG 64
           +S  + KKLIRID S+DTVCPWCFVGK+NLDKAIASSKD+Y+FEI WHPF LNP APKEG
Sbjct: 1   MSGISEKKLIRIDASADTVCPWCFVGKKNLDKAIASSKDKYNFEIIWHPFQLNPDAPKEG 60

Query: 65  VNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQ 124
           ++K++FY +KFGSQ++ + ARM+EVF+ +GLEY++SGLTGNT+DSHRL+Y A QQGLDKQ
Sbjct: 61  IDKREFYRSKFGSQSERMEARMSEVFKNVGLEYSLSGLTGNTIDSHRLIYFARQQGLDKQ 120

Query: 125 HNLAEELFLGYFTQGKYIGD 144
           H+L EEL +GYFTQGKYIGD
Sbjct: 121 HDLVEELNIGYFTQGKYIGD 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242033733|ref|XP_002464261.1| hypothetical protein SORBIDRAFT_01g015110 [Sorghum bicolor] gi|241918115|gb|EER91259.1| hypothetical protein SORBIDRAFT_01g015110 [Sorghum bicolor]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/145 (72%), Positives = 123/145 (84%), Gaps = 1/145 (0%)

Query: 2   AQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAP 61
           A+ ++S  GKKLI+IDVSSDTVCPWCFVGK+NL+KA+  SKD++DFE+RWHPFFLNP AP
Sbjct: 22  AKFMASDTGKKLIQIDVSSDTVCPWCFVGKKNLEKAMEQSKDKFDFEVRWHPFFLNPDAP 81

Query: 62  KEGVNKKDFYENKFGS-QNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQG 120
           KEGV K DF+  KFG  Q +  I+RMTE+FRGLGLEY+MSGLTGNT+DSHRL+ LAG QG
Sbjct: 82  KEGVRKTDFFRAKFGPVQYERAISRMTEIFRGLGLEYDMSGLTGNTMDSHRLITLAGHQG 141

Query: 121 LDKQHNLAEELFLGYFTQGKYIGDK 145
            DKQ+ L EELFL YF QGKYIGDK
Sbjct: 142 YDKQNALVEELFLNYFCQGKYIGDK 166

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2152307	217	AT5G38900 [Arabidopsis thalian	0.843	0.668	0.703	4.2e-56
UNIPROTKB|Q5LRQ5	218	SPO2070 "DSBA-like thioredoxin	0.738	0.582	0.411	4e-26
TIGR_CMR|SPO_2070	218	SPO_2070 "DSBA-like thioredoxi	0.738	0.582	0.411	4e-26
TIGR_CMR|SPO_1390	219	SPO_1390 "thioredoxin domain p	0.738	0.579	0.404	3.5e-20
UNIPROTKB|Q87XK1	215	PSPTO_4177 "2-hydroxychromene-	0.720	0.576	0.393	2.8e-18
UNIPROTKB|G4N6W8	285	MGG_06508 "Thioredoxin" [Magna	0.645	0.389	0.339	8.9e-18
ASPGD|ASPL0000031134	202	AN10641 [Emericella nidulans (	0.674	0.574	0.392	8.6e-17
ASPGD|ASPL0000068796	262	AN10938 [Emericella nidulans (	0.697	0.458	0.335	2.3e-14
UNIPROTKB|Q0C2F9	221	HNE_1367 "Putative frnE protei	0.744	0.579	0.318	6.2e-14
UNIPROTKB|Q9KMY8	217	VC_A0178 "FrnE protein" [Vibri	0.744	0.589	0.338	1.6e-13

TAIR|locus:2152307 AT5G38900 [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 102/145 (70%), Positives = 130/145 (89%)

Query:     1 MAQSVSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSA 60
             MA+S S++A KKLI+IDVSSD+VCPWCFVGK+NLDKAI +SKDQY+FEIRW PFFL+PSA
Sbjct:     1 MAESASNTASKKLIQIDVSSDSVCPWCFVGKKNLDKAIEASKDQYNFEIRWRPFFLDPSA 60

Query:    61 PKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQG 120
             PKEGV+KK+FY  K+G++ QG+ ARM+EVF+GLGLE++ +GLTGN+LDSHRL++  G+Q 
Sbjct:    61 PKEGVSKKEFYLQKYGNRYQGMFARMSEVFKGLGLEFDTAGLTGNSLDSHRLIHYTGKQA 120

Query:   121 LDKQHNLAEELFLGYFTQGKYIGDK 145
              +KQH L EELF+GYFTQGK+IGD+
Sbjct:   121 PEKQHTLVEELFIGYFTQGKFIGDR 145

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

UNIPROTKB|Q5LRQ5 SPO2070 "DSBA-like thioredoxin family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 56/136 (41%), Positives = 85/136 (62%)

Query:    14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
             +++D+ SD +CPWC++GK  LDKA+A+  D + F I WHPF LNP    EG++++++ E 
Sbjct:     5 VKLDILSDPICPWCYIGKTQLDKALAAIPD-HPFVIEWHPFQLNPDMAPEGMDRREYLER 63

Query:    74 KFGSQNQGIIARMTEVFR-----GLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLA 128
             KFG + +G +     V       GL +++     T NTLD+HRL++ AG +G  KQ    
Sbjct:    64 KFGGK-EGAVRAYAPVVEHAEKAGLAIDFEAMQRTPNTLDAHRLIHWAGVEG--KQTEAV 120

Query:   129 EELFLGYFTQGKYIGD 144
             + LF  YFT+G+ IGD
Sbjct:   121 DALFAAYFTEGRDIGD 136

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2070 SPO_2070 "DSBA-like thioredoxin family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 56/136 (41%), Positives = 85/136 (62%)

Query:    14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
             +++D+ SD +CPWC++GK  LDKA+A+  D + F I WHPF LNP    EG++++++ E 
Sbjct:     5 VKLDILSDPICPWCYIGKTQLDKALAAIPD-HPFVIEWHPFQLNPDMAPEGMDRREYLER 63

Query:    74 KFGSQNQGIIARMTEVFR-----GLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLA 128
             KFG + +G +     V       GL +++     T NTLD+HRL++ AG +G  KQ    
Sbjct:    64 KFGGK-EGAVRAYAPVVEHAEKAGLAIDFEAMQRTPNTLDAHRLIHWAGVEG--KQTEAV 120

Query:   129 EELFLGYFTQGKYIGD 144
             + LF  YFT+G+ IGD
Sbjct:   121 DALFAAYFTEGRDIGD 136

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_1390 SPO_1390 "thioredoxin domain protein, DsbA family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 55/136 (40%), Positives = 78/136 (57%)

Query:    14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
             ++ID+ SD VCPWC VG R LD+A+A++       +RWHPF LNP    EG N ++    
Sbjct:    10 LQIDIVSDVVCPWCIVGFRQLDQALAATGVLA--RLRWHPFELNPQMGPEGQNLREHIME 67

Query:    74 KFGS---QNQGIIARMTEVFRGLGLEYNMSGLTG--NTLDSHRLLYLAGQQGLDKQHNLA 128
             K+GS   Q+    AR+T +   LG  +N +  +   NT  +H+LL  A  QG  +QH L 
Sbjct:    68 KYGSTPEQSAEARARLTAIGAELGFTFNFTDDSRIVNTFAAHQLLDWAEGQG--RQHPLK 125

Query:   129 EELFLGYFTQGKYIGD 144
             + LF  YFT G+ + D
Sbjct:   126 QALFAAYFTDGRDVSD 141

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|Q87XK1 PSPTO_4177 "2-hydroxychromene-2-carboxylate isomerase family protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 52/132 (39%), Positives = 75/132 (56%)

Query:    14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
             ++ID  SD  CPWC +G R LD+A+ +  D+   +I + PF LNP+ P EG + K+    
Sbjct:     5 LKIDFISDVSCPWCVIGLRALDQALEALGDEVQAQIHFQPFELNPNMPAEGQDIKEHIAE 64

Query:    74 KFGSQNQGIIARMTEVFRGLGLEYNMSGLTG-----NTLDSHRLLYLAGQQGLDKQHNLA 128
             K+GS  + I A + E  R  G E   +   G     NT D+HRLL+ A Q+G  KQ  L 
Sbjct:    65 KYGSTPEQIEA-IHETIRERGAELGFTFGKGERRIYNTFDAHRLLHWAEQEG--KQPALK 121

Query:   129 EELFLGYFTQGK 140
             + LF+ YF++ K
Sbjct:   122 QALFVAYFSELK 133

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4N6W8 MGG_06508 "Thioredoxin" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 192 (72.6 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
 Identities = 39/115 (33%), Positives = 58/115 (50%)

Query:    15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQY---DFEIRWHPFFLNPSAPKEGVNKKDFY 71
             ++D+ SDT CPWC+VG ++L+ AIA    Q+    FE+ WHPFF+ P+        ++ Y
Sbjct:    30 KVDIYSDTACPWCYVGNKSLESAIADFTGQHPEASFELVWHPFFVFPNVKGSTYTYREIY 89

Query:    72 ENKFGSQNQGIIARMTEVFRG-LGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQH 125
                 G        R  EV    LG+ ++  G TG+   SH+LL  A +      H
Sbjct:    90 TRAHGPARAADFFRRLEVAGAPLGISFDWHGRTGDMAASHKLLLWASEMSSGSGH 144

GO:0008150 "biological_process" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

ASPGD|ASPL0000031134 AN10641 [Emericella nidulans (taxid:162425)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 49/125 (39%), Positives = 73/125 (58%)

Query:    16 IDVSSDTVCPWCFVGKRNLDKAIASSK--DQYD-FEIRWHPFFLNPSAPK-EGVNKKDFY 71
             I + SD+VCPWC+VG R L +AI + K  +  D F I W PF+LN S+P   GVNK+ FY
Sbjct:     6 IQIISDSVCPWCYVGYRRLSRAITTHKLTNPLDTFTITWSPFYLNASSPGYPGVNKRQFY 65

Query:    72 ENKFGSQNQG-IIARMTEVFRGLGLEYNM--SGLTGNTLDSHRLLYLAGQQGLDKQHNLA 128
             ENKFG+   G I  R+  V  G G+++    +G+ G  L + R++    +   +++ N+ 
Sbjct:    66 ENKFGAARTGAIFERLAAVGEGEGIKFRKIENGVIGG-LQT-RVVERLFRAYFEEEKNIT 123

Query:   129 EELFL 133
             E   L
Sbjct:   124 ERAVL 128

GO:0008150 "biological_process" evidence=ND

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

ASPGD|ASPL0000068796 AN10938 [Emericella nidulans (taxid:162425)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 43/128 (33%), Positives = 67/128 (52%)

Query:    13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQY------DFEIRWHPFFLNPSAPKEGVN 66
             +I I++ SD +CPWCF+G R L KAIA  K  Y      +F I W P+F++  AP+  V 
Sbjct:     3 VISIEIISDVICPWCFIGYRTLQKAIALYKKTYPGGSENEFVIEWKPYFIDQVAPETSVL 62

Query:    67 KKDFYENKFG-SQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLA-GQQGLDKQ 124
               D    +   SQ +    R+  +   +G+ +   G  G++  +HR L+LA  + G   Q
Sbjct:    63 INDRMARRMTRSQIEAAQKRLKRIGSTVGISFKFGGYIGSSRLAHRALHLALDKGGSQMQ 122

Query:   125 HNLAEELF 132
               +A+ LF
Sbjct:   123 CTVADTLF 130

GO:0008150 "biological_process" evidence=ND

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

UNIPROTKB|Q0C2F9 HNE_1367 "Putative frnE protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 44/138 (31%), Positives = 73/138 (52%)

Query:    14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
             + I++ SD VCPWC++G R +  AIA + D    ++ + P+ L+P+ P  GV+ K++  +
Sbjct:     3 VAIEMVSDPVCPWCWLGLRRIQAAIAQTPD-IKVQLLFRPYELDPTIPAAGVDYKEYMGS 61

Query:    74 KFGS-QNQGIIARMTEVFRGLG----LEYNMSGLTG--NTLDSHRLLYLAGQQGLDKQHN 126
             +  S + +  +A M +     G    + Y    +T   N+ D+HRL+  A  QG  K   
Sbjct:    62 RVSSPEGKERMAAMRQALIDYGAAEDIPYRFDAVTHRPNSFDAHRLVRWA--QGQGKGAE 119

Query:   127 LAEELFLGYFTQGKYIGD 144
               E LF  YF + + IGD
Sbjct:   120 AKEALFRAYFNEARNIGD 137

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|Q9KMY8 VC_A0178 "FrnE protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 46/136 (33%), Positives = 69/136 (50%)

Query:    14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
             + ID+ SD VCPWC +G   L  A+A   +  +  +RWHP+ LNP     G N ++    
Sbjct:     4 LTIDLVSDIVCPWCVIGYFRLRHALARLPE-VNVTLRWHPYELNPRLAIGGENLREHLNK 62

Query:    74 KFGSQ---NQGIIARMTEVFRGLGLEYNMSGLTG--NTLDSHRLLYLAGQQGLDKQHNLA 128
             K+G+    +Q     +TE+   +G  ++        NT  +H+LL  A QQ  DKQ  L 
Sbjct:    63 KYGTSLEASQQARKTLTELGNDVGFAFHFFDEMRIYNTRKAHQLLLWAHQQ--DKQLPLT 120

Query:   129 EELFLGYFTQGKYIGD 144
               L+  YF QG+ I +
Sbjct:   121 LALWSAYFQQGQAIDE 136

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.18	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_1550027	hypothetical protein (217 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.17523000101	hypothetical protein (108 aa)	•						•		0.466

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
cd03024	201	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; F	7e-57
COG2761	225	COG2761, FrnE, Predicted dithiol-disulfide isomera	2e-35
pfam01323	191	pfam01323, DSBA, DSBA-like thioredoxin domain	1e-23
cd02972	98	cd02972, DsbA_family, DsbA family; consists of Dsb	2e-08
cd03022	192	cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychro	2e-04

>gnl|CDD|239322 cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif

 Score =  177 bits (450), Expect = 7e-57
 Identities = 61/132 (46%), Positives = 83/132 (62%), Gaps = 5/132 (3%)

Query: 16  IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKF 75
           ID+ SD VCPWC++GKR L+KA+A   D+ D EI W PF LNP  P EG +++++   K+
Sbjct: 1   IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKY 60

Query: 76  GSQNQGIIA--RMTEVFRGLGLEYNMSGLT-GNTLDSHRLLYLAGQQGLDKQHNLAEELF 132
           GS  +   A  R+       GLE++   +   NT D+HRL++LA +QG  KQ  L E LF
Sbjct: 61  GSTAEQAAAMRRVEAAAAAEGLEFDFDRVRPPNTFDAHRLIHLAKEQG--KQDALVEALF 118

Query: 133 LGYFTQGKYIGD 144
             YFT+GK IGD
Sbjct: 119 RAYFTEGKDIGD 130

It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins. Length = 201

>gnl|CDD|225355 COG2761, FrnE, Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  122 bits (309), Expect = 2e-35
 Identities = 57/135 (42%), Positives = 80/135 (59%), Gaps = 5/135 (3%)

Query: 14  IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
           I IDV SD VCPWC++GKR L+KA+A    +   EIRW PF L+P  P EG+++K++   
Sbjct: 6   IEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQ 65

Query: 74  KFGSQ--NQGIIARMTEVFRGLGLEYNMSGL--TGNTLDSHRLLYLAGQQGLDKQHNLAE 129
           K+G     +   AR+ E+    G+++N   +    NTLD+HRL+  A  QG   Q    E
Sbjct: 66  KYGISEEQKAAHARLEELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQG-KAQDRFLE 124

Query: 130 ELFLGYFTQGKYIGD 144
            LF  YF +G+ IGD
Sbjct: 125 ALFEAYFEEGRNIGD 139

Length = 225

>gnl|CDD|216433 pfam01323, DSBA, DSBA-like thioredoxin domain

 Score = 91.3 bits (227), Expect = 1e-23
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 11/132 (8%)

Query: 15  RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENK 74
            +D   D +CP+C++ K  L+K  A      D ++ + PF L  +     V   +     
Sbjct: 1   TVDEFFDFLCPFCYLAKERLEKLAARYG---DVKVVYRPFPLAGAKKIGNVGPSNLPV-- 55

Query: 75  FGSQNQGIIARMTEVFRGLGLEYNMSGL-TGNTLDSHRLLYLAGQQGLDKQHNLAEELFL 133
              + + ++A +       G+         GN+  ++RL   AG +       +  ELF 
Sbjct: 56  ---KLKYMMADLERWAALYGIPLRFPANFLGNSTRANRLALAAGAE--GLAEKVVRELFN 110

Query: 134 GYFTQGKYIGDK 145
             + +G  I D 
Sbjct: 111 ALWGEGAAITDD 122

This family contains a diverse set of proteins with a thioredoxin-like structure pfam00085. This family also includes 2-hydroxychromene-2-carboxylate (HCCA) isomerase enzymes catalyze one step in prokaryotic polyaromatic hydrocarbon (PAH) catabolic pathways. This family also contains members with functions other than HCCA isomerisation, such as Kappa family GSTs, whose similarity to HCCA isomerases was not previously recognised. Some member sequences have been annotated as a dioxygenases, dehydrogenases, and putative glycerol-3-phosphate transfer proteins, but are most likely HCCA isomerase enzymes. Length = 191

>gnl|CDD|239270 cd02972, DsbA_family, DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVN 66
          I    D +CP+C++ +  L+K +    D     + + PF L    P   + 
Sbjct: 1  IVEFFDPLCPYCYLFEPELEKLLY--ADDGGVRVVYRPFPLLGGMPPNSLA 49

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. Length = 98

>gnl|CDD|239320 cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 24/135 (17%), Positives = 41/135 (30%), Gaps = 29/135 (21%)

Query: 21  DTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNP-------SAPKEGVNKKDFYEN 73
           D   P+ ++    L    A    ++   +R+ P  L           P      K  Y  
Sbjct: 6   DFSSPYSYLAHERLPALAA----RHGATVRYRPILLGGVFKATGNVPPANRPPAKGRY-- 59

Query: 74  KFGSQNQGIIARMTEVFRG---LGLEYNM-SGLTGNTLDSHRLLYLAGQQGLDKQHNLAE 129
                      R+ ++ R     G+          NTL + R    A  +G   +   A 
Sbjct: 60  -----------RLRDLERWARRYGIPLRFPPRFPPNTLRAMRAALAAQAEGDAAEA-FAR 107

Query: 130 ELFLGYFTQGKYIGD 144
            +F   + +G  I D
Sbjct: 108 AVFRALWGEGLDIAD 122

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK). Length = 192

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
COG2761	225	FrnE Predicted dithiol-disulfide isomerase involve	100.0
cd03024	201	DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a D	100.0
cd03021	209	DsbA_GSTK DsbA family, Glutathione (GSH) S-transfe	99.97
cd03022	192	DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car	99.96
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	99.96
COG3917	203	NahD 2-hydroxychromene-2-carboxylate isomerase [Se	99.94
cd03025	193	DsbA_FrnE_like DsbA family, FrnE-like subfamily; c	99.93
COG3531	212	Predicted protein-disulfide isomerase [Posttransla	99.9
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	99.75
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	99.45
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	99.23
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	98.98
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	98.71
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	98.04
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.16
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.07
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	96.9
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	95.73
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	93.65
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	93.35
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	90.48
COG3011	137	Predicted thiol-disulfide oxidoreductase [General	90.19
PRK11200	85	grxA glutaredoxin 1; Provisional	89.73
PF03227	108	GILT: Gamma interferon inducible lysosomal thiol r	89.2
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	88.63
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	88.58
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	87.39
PRK10329	81	glutaredoxin-like protein; Provisional	86.88
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	86.78
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	86.63
PRK10638	83	glutaredoxin 3; Provisional	84.58
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	83.62
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	82.03
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	82.02
PF13728	215	TraF: F plasmid transfer operon protein	81.64
COG3084	88	Uncharacterized protein conserved in bacteria [Fun	81.06
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	80.54
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	80.01

>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.3e-39  Score=247.21  Aligned_cols=152  Identities=38%  Similarity=0.702  Sum_probs=141.4

Q ss_pred             CcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCC--cHHHHHHHHHH
Q 030756           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGS--QNQGIIARMTE   88 (172)
Q Consensus        11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~   88 (172)
                      +.+++|++|+|++|||||+|+++|++++.+|++...++|+||||.|.|..++.|.+.++++..+||.  +.+.+..++++
T Consensus         3 ~~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~~~~~~~~~~~~~~   82 (225)
T COG2761           3 PMKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYGISEEQKAAHARLEE   82 (225)
T ss_pred             CceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEecccccCCCCCcccccHHHHHHHHhCccHHHHHHHHHHHH
Confidence            5679999999999999999999999999999888899999999999999988899999999999997  44777889999


Q ss_pred             HHHhcCCccccCCC--CCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756           89 VFRGLGLEYNMSGL--TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVN  163 (172)
Q Consensus        89 ~a~~~Gi~~~~~~~--~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~  163 (172)
                      .++..|+.|+++..  .+||+.||+++++|+.+|+ .+.+|+++||+|||++|+||+|.+||.+||+++|||.+++.
T Consensus        83 ~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~-~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~~GLD~~~~~  158 (225)
T COG2761          83 LAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGK-AQDRFLEALFEAYFEEGRNIGDEDVLADIAEEVGLDREEFK  158 (225)
T ss_pred             hhHhcCcccchhhccCCCchHHHHHHHHHHHHhCc-hHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhCCCHHHHH
Confidence            99999999999874  5999999999999999997 69999999999999999999999999999999999987543

>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif

Probab=100.00  E-value=6.9e-32  Score=205.35  Aligned_cols=145  Identities=41%  Similarity=0.760  Sum_probs=127.3

Q ss_pred             EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCC--cHHHHHHHHHHHHHhc
Q 030756           16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGS--QNQGIIARMTEVFRGL   93 (172)
Q Consensus        16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~a~~~   93 (172)
                      |++|+|++|||||+|.++|++++++|+.+.+++|+|+||.|.++.+..|......+..+++.  +...+..+++++++.+
T Consensus         1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~   80 (201)
T cd03024           1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAAAAE   80 (201)
T ss_pred             CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHc
Confidence            68999999999999999999999887533479999999999999888777766777776665  4455667999999999


Q ss_pred             CCccccCCCC-CChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756           94 GLEYNMSGLT-GNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV  162 (172)
Q Consensus        94 Gi~~~~~~~~-~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~  162 (172)
                      |++|++++.+ .||..||+++.+|+++|.  ..+|.++||+++|.+|+||+++++|.++|+++|||++.+
T Consensus        81 gi~~~~~~~~~~~s~~a~~~~~~a~~~~~--~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~  148 (201)
T cd03024          81 GLEFDFDRVRPPNTFDAHRLIHLAKEQGK--QDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEA  148 (201)
T ss_pred             CCcccCCCCccCCcHHHHHHHHHHhccCc--HHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHH
Confidence            9999988764 599999999999988876  899999999999999999999999999999999998643

It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates

Probab=99.97  E-value=1.2e-31  Score=206.03  Aligned_cols=140  Identities=14%  Similarity=0.172  Sum_probs=115.4

Q ss_pred             eEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHhcC
Q 030756           15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLG   94 (172)
Q Consensus        15 ~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~G   94 (172)
                      +|+||||++|||||+|+++|+++++.    .+++|+||||.|+|.++.+|.........    +.+++.++++++++.+|
T Consensus         2 ~Id~~~D~vcPwcylg~~~l~~~~~~----~~v~i~~~P~~L~~~~~~~g~~~~~~~~~----k~~~~~~~~~~~a~~~G   73 (209)
T cd03021           2 KIELYYDVVSPYSYLAFEVLCRYQTA----WNVDITYVPVFLGGIMKDSGNKPPIMLPN----KAKYMAKDRKRSAEFFG   73 (209)
T ss_pred             ceEEEEeCCChHHHHHHHHHHHHHHH----hCCeEEEEeeehhHHHhccCCCCcccCch----HHHHHHHHHHHHHHHhC
Confidence            69999999999999999999998863    57999999999999876655432221111    45778999999999999


Q ss_pred             CccccCCC----CCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHH----HHHHHhcCCCcccc
Q 030756           95 LEYNMSGL----TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAY----FSFDEFFFFFPSLV  162 (172)
Q Consensus        95 i~~~~~~~----~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL----~~ia~~~Gld~~~~  162 (172)
                      ++|++++.    +.||..|||++.+|++.|.+...++.+++|++||.+|.||+++.++    .++|+++|||++..
T Consensus        74 l~~~~~~~~~~~~~nt~~a~rl~~~a~~~~~~~~~~~~~~l~~a~f~~g~~i~~~~~l~~vL~~~a~~~Gld~~~~  149 (209)
T cd03021          74 VPIRQPKDFFFMKKGTLTAQRFLTAISEQHPESTLTALEALFREFWVRPWSLTEPITESQSISVAADKLGGSAEQA  149 (209)
T ss_pred             CCCCCCCCCcccCcccHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHcCCCcccH
Confidence            99998764    4899999999999988776323679999999999999999966555    79999999986543

It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.

>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

Probab=99.96  E-value=1.7e-29  Score=190.73  Aligned_cols=138  Identities=17%  Similarity=0.220  Sum_probs=113.8

Q ss_pred             EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCC-CHHHHHHHHhCCcHHHHHHHHHHHHHhcC
Q 030756           16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGV-NKKDFYENKFGSQNQGIIARMTEVFRGLG   94 (172)
Q Consensus        16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~a~~~G   94 (172)
                      |+||+|++|||||+|.++|+++.+++    +++|+|+||.|++..+..|. +.......    +..++..++.++++.+|
T Consensus         1 i~~~~D~~cP~cy~~~~~l~~~~~~~----~~~i~~~p~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~g   72 (192)
T cd03022           1 IDFYFDFSSPYSYLAHERLPALAARH----GATVRYRPILLGGVFKATGNVPPANRPPA----KGRYRLRDLERWARRYG   72 (192)
T ss_pred             CeEEEeCCChHHHHHHHHHHHHHHHh----CCeeEEeeeeHHHHHHHhCCCCCcccccH----HHHHHHHHHHHHHHHcC
Confidence            68999999999999999999988754    69999999999885433322 11111111    23567788999999999


Q ss_pred             CccccCCC-CCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756           95 LEYNMSGL-TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV  162 (172)
Q Consensus        95 i~~~~~~~-~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~  162 (172)
                      ++|++++. +.||..|++++.+|+.+| +...++.++||+++|.+|+||+|+++|.+++.++|||++.+
T Consensus        73 ~~~~~~~~~~~~s~~a~~~~~~a~~~~-~~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~  140 (192)
T cd03022          73 IPLRFPPRFPPNTLRAMRAALAAQAEG-DAAEAFARAVFRALWGEGLDIADPAVLAAVAAAAGLDADEL  140 (192)
T ss_pred             CCCCCCCCCCCChHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCCHHHH
Confidence            99998764 479999999999998888 33899999999999999999999999999999999998643

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=99.96  E-value=3.6e-29  Score=188.89  Aligned_cols=139  Identities=28%  Similarity=0.513  Sum_probs=112.5

Q ss_pred             eEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCC-CCCHHHHHHHHhCCcHHHHHHHHHHHHHhc
Q 030756           15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKE-GVNKKDFYENKFGSQNQGIIARMTEVFRGL   93 (172)
Q Consensus        15 ~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~   93 (172)
                      +|++|+|+.|||||+++++|+++++++.   +++|+|+||.|.+..+.. +.+..+ ...    +.+++.+++.++++.+
T Consensus         1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~---~~~i~~~p~~l~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~a~~~   72 (193)
T PF01323_consen    1 TIEFFFDFICPWCYLASPRLRKLRAEYP---DVEIEWRPFPLRPDMRRSGGAPPAE-DPA----KAEYMFQDLERWARRY   72 (193)
T ss_dssp             EEEEEEBTTBHHHHHHHHHHHHHHHHHT---TCEEEEEEESSSTHHHHCT-SCGCG-SHH----HHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCcEEEeccccccccccCCCCCccc-Chh----HHHHHHHHHHHHHHHh
Confidence            6999999999999999999999998762   699999999998874322 222222 111    3567789999999999


Q ss_pred             CCccccCCC-CCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756           94 GLEYNMSGL-TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVN  163 (172)
Q Consensus        94 Gi~~~~~~~-~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~  163 (172)
                      |+++++++. +.+|..|++++.+++.+|.  ..++.+++|+++|.+|+||+|+++|.++++++|+|++++.
T Consensus        73 gi~~~~~~~~~~~s~~a~~~~~~a~~~~~--~~~~~~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~  141 (193)
T PF01323_consen   73 GIPFNFPPPFPGNSRPAHRAAYAAQEQGK--ADAFADALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFD  141 (193)
T ss_dssp             T--TBTSSTHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHH
T ss_pred             cCcccCCchhhhhhHHHHHHHHHHHHhhh--hhHHHHHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHH
Confidence            999998865 2599999999999999884  8999999999999999999999999999999999987543

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.94  E-value=4.1e-26  Score=166.78  Aligned_cols=142  Identities=15%  Similarity=0.182  Sum_probs=118.6

Q ss_pred             cceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCC--CHHHHHHHHhCCcHHHHHHHHHHH
Q 030756           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGV--NKKDFYENKFGSQNQGIIARMTEV   89 (172)
Q Consensus        12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~   89 (172)
                      ...+|+|||||.|||+|++.++|..+.+.    ++..|.|||..|+.++..+|+  +..... .    .-++...+++|+
T Consensus         6 ~~ktIef~fdf~SP~ayL~~~~~~~laq~----~ga~v~~rP~llg~vfk~tG~~~Pl~~~~-~----~~dY~~~d~~R~   76 (203)
T COG3917           6 MNKTIEFYFDFSSPYAYLAWPRLPALAQA----YGAAVALRPILLGGVFKATGNGVPLIKTP-Q----PGDYITLDLKRE   76 (203)
T ss_pred             CCceeEEEEecCCchHHhhhhhhHHHHHH----cCCceEEEeeeeceeEeecCCCCcccccC-C----CCceehHHHHHH
Confidence            34569999999999999999999998875    578999999999998877764  222111 1    125678899999


Q ss_pred             HHhcCCccccCCC-CCChHHHHHHHHHHh-hcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccccc
Q 030756           90 FRGLGLEYNMSGL-TGNTLDSHRLLYLAG-QQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVNI  164 (172)
Q Consensus        90 a~~~Gi~~~~~~~-~~~s~~A~r~~~~a~-~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~~  164 (172)
                      ++++|+|+.++.. +.||.-+.|+++++. ..+.  ..+|+++++++.|.+|+|+++|||+..+|.++|||+.++..
T Consensus        77 akr~Glp~~f~~~fp~nt~~~~R~~~~~~~~g~~--a~~~~~a~lrAlw~d~~~l~epev~~~vA~~aGlDg~al~A  151 (203)
T COG3917          77 AKRHGLPLRFPRHFPPNTLGAARAMIALAMGGGL--AEQFAEAVLRALWADGQNLGEPEVVYAVANAAGLDGAALLA  151 (203)
T ss_pred             HHHcCCccccCCCCCCchHHHHHHHHHHHhccch--HHHHHHHHHHHHhhcccccCChHHHHHHHHHcCCCHHHHHh
Confidence            9999999988875 589999999998853 3444  89999999999999999999999999999999999986543

>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE

Probab=99.93  E-value=7.9e-25  Score=165.40  Aligned_cols=136  Identities=15%  Similarity=0.143  Sum_probs=109.2

Q ss_pred             eeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHHH-h
Q 030756           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR-G   92 (172)
Q Consensus        14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~-~   92 (172)
                      ++|++|+|++|||||++.++|+++.++|+  .+++|+|+++.|.+.....+....           .....++.++++ .
T Consensus         1 ~~i~~~~D~~cp~c~~~~~~l~~l~~~~~--~~~~v~~~~~~L~~~~~~~~~~~~-----------~~~~~~~~~~~~~~   67 (193)
T cd03025           1 LELYYFIDPLCGWCYGFEPLLEKLKEEYG--GGIEVELHLGGLLPGNNARQITKQ-----------WRIYVHWHKARIAL   67 (193)
T ss_pred             CeEEEEECCCCchhhCchHHHHHHHHHhC--CCceEEEEeccccCCCCCCCcchH-----------HHHHHhHHHHHHHh
Confidence            47999999999999999999999998873  379999998887765432211111           122344555566 8


Q ss_pred             cCCccccCCC-----CCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756           93 LGLEYNMSGL-----TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV  162 (172)
Q Consensus        93 ~Gi~~~~~~~-----~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~  162 (172)
                      .|++++.+..     +.+|..|++++.+|+.+|++....|.+++|+++|.+|+||++.++|.++++++|+|++.+
T Consensus        68 ~g~~~~~~~~~~~~~~~~s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~l~~ia~~~Gld~~~~  142 (193)
T cd03025          68 TGQPFGEDYLELLLFDLDSAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRDLADTEVLRELAIELGLDVEEF  142 (193)
T ss_pred             cCCccCchhHhcccCCCCchHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHH
Confidence            8999887642     357999999999999888766899999999999999999999999999999999998754

FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.

>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.7e-23  Score=155.42  Aligned_cols=136  Identities=13%  Similarity=0.152  Sum_probs=109.3

Q ss_pred             eeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCC-CCCHHHHHHHHhCCcHHHHHHHHHHHHHh
Q 030756           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKE-GVNKKDFYENKFGSQNQGIIARMTEVFRG   92 (172)
Q Consensus        14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~a~~   92 (172)
                      ++++|+|||+|.|||.+.+.++++.+    .-+++|++||-.|.++-... +..++           .+...+.+++++.
T Consensus         2 ~~lhYifDPmCgWCyGa~Pll~~l~~----~~gl~~~L~~GGl~aG~r~pl~~~~r-----------~~i~~hd~rIa~l   66 (212)
T COG3531           2 VTLHYIFDPMCGWCYGAAPLLEALSA----QPGLEVVLHGGGLRAGNRRPLDPAFR-----------AYILPHDQRIAQL   66 (212)
T ss_pred             ceeEEecCcchhhhhCccHHHHHHHh----cCCceEEEecCCccCCCCCCCChHHH-----------HHhhhhHHHHHHH
Confidence            57999999999999999999998765    23899999998776552111 11222           2345677888899


Q ss_pred             cCCcccc---C------CCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756           93 LGLEYNM---S------GLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVN  163 (172)
Q Consensus        93 ~Gi~~~~---~------~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~  163 (172)
                      .|.||..   +      +...||.+|++++.+|+..+.+....++++|++|||+||+||.+.+||.++|.+.||++++.+
T Consensus        67 TGqpFg~~y~~~lL~~~~~v~DSepa~~ai~aA~~l~~r~~l~ml~aIQrA~YvEGrdi~~t~vl~~laa~~GL~~~~f~  146 (212)
T COG3531          67 TGQPFGQAYFDGLLRDTGFVYDSEPACRAILAARLLDGRGRLTMLHAIQRAHYVEGRDITQTEVLAELAAAIGLAAEEFD  146 (212)
T ss_pred             hCCccchhHHhhhhcccCccccccHHHHHHHHHHHhCcccchHHHHHHHHHHHhccccchhhHHHHHHHHHcCCCHHHHH
Confidence            9999951   1      245899999999999998776655899999999999999999999999999999999987654


Q ss_pred             c
Q 030756          164 I  164 (172)
Q Consensus       164 ~  164 (172)
                      .
T Consensus       147 ~  147 (212)
T COG3531         147 N  147 (212)
T ss_pred             H
Confidence            3

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=99.75  E-value=7.8e-18  Score=126.26  Aligned_cols=117  Identities=18%  Similarity=0.198  Sum_probs=79.0

Q ss_pred             EEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHhcCCcc
Q 030756           18 VSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGLGLEY   97 (172)
Q Consensus        18 ~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gi~~   97 (172)
                      +|.||+|+|||...+.+.++..+|+.  .+++++.|+.+.++....   +..                       .+++.
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~--~i~~~~i~~~~~~~~~~~---~~~-----------------------~~~~~   53 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGN--KIEFRFIPGGLMPDINDF---MPR-----------------------MPING   53 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-T--TEEEEEEE--SS-S--SB-----H---------------------------T
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCC--cEEEEEEEccchHHHHHH---HHh-----------------------cCCCH
Confidence            79999999999999999999998864  689999998776653221   000                       11111


Q ss_pred             --ccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756           98 --NMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV  162 (172)
Q Consensus        98 --~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~  162 (172)
                        ..+....+|.+|+++++||+.+|++++.+|+.+|+++++.+|+|+++.++|.++|+++|||.+..
T Consensus        54 ~~~~~~~~~~~y~a~la~kAA~~qg~k~~~~fL~~lQ~a~~~~~~~~s~~~~l~~iA~~~gLD~~~F  120 (176)
T PF13743_consen   54 DFWRNEPRSSSYPACLAYKAAQLQGKKKARRFLRALQEALFLEGKNYSDEELLLEIAEELGLDVEMF  120 (176)
T ss_dssp             THHHS--BS--HHHHHHHHHHHTTT-H--HHHHHHHHHHHHTS---TTSHHHHHHHHHHTT--HHHH
T ss_pred             HHhcCCCCCCchHHHHHHHHHHHhChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCHHHH
Confidence              12334578999999999999999988999999999999999999999999999999999998744

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=99.45  E-value=1.1e-12  Score=97.52  Aligned_cols=104  Identities=15%  Similarity=0.075  Sum_probs=82.8

Q ss_pred             CcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHH
Q 030756           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVF   90 (172)
Q Consensus        11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a   90 (172)
                      ..+++|.+|+|+.||||+-.++.+.+++.+++  .++.++++|+.+....                              
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~------------------------------   61 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP--KDVKFEKVPVVFGGGE------------------------------   61 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC--CCceEEEcCCcccccc------------------------------
Confidence            45789999999999999999999999998774  3688888887543210                              


Q ss_pred             HhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756           91 RGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVN  163 (172)
Q Consensus        91 ~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~  163 (172)
                                     +..+.++..++...|.  ..+|..++|++.|.++.++++.++|.+++.++|+|.+.+.
T Consensus        62 ---------------~~~aa~a~~aa~~~~~--~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gl~~~~~~  117 (178)
T cd03019          62 ---------------GEPLARAFYAAEALGL--EDKLHAALFEAIHEKRKRLLDPDDIRKIFLSQGVDKKKFD  117 (178)
T ss_pred             ---------------chHHHHHHHHHHHcCc--HhhhhHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCHHHHH
Confidence                           1223455555555665  7789999999999999999999999999999999886543

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=99.23  E-value=2e-10  Score=82.95  Aligned_cols=101  Identities=12%  Similarity=0.082  Sum_probs=70.4

Q ss_pred             cCCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHH
Q 030756            9 AGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTE   88 (172)
Q Consensus         9 ~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   88 (172)
                      +...+++|.+|+|+.||||+-..+.+.++..+++   ++.|.++++.+...                             
T Consensus         2 ~~~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~---~~~~~~~~~p~~~~-----------------------------   49 (154)
T cd03023           2 NPNGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP---DVRVVFKEFPILGE-----------------------------   49 (154)
T ss_pred             CCCCCEEEEEEECCCChhHHHhhHHHHHHHHHCC---CceEEEEeCCccCc-----------------------------
Confidence            4457899999999999999999999998777654   47888887743211                             


Q ss_pred             HHHhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756           89 VFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV  162 (172)
Q Consensus        89 ~a~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~  162 (172)
                                      ++..+++++.++...+++..++|.+++|+    ++ ++.+.++|.++++++|+|.+.+
T Consensus        50 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~lf~----~~-~~~~~~~l~~~a~~~gl~~~~~  102 (154)
T cd03023          50 ----------------SSVLAARVALAVWKNGPGKYLEFHNALMA----TR-GRLNEESLLRIAKKAGLDEAKL  102 (154)
T ss_pred             ----------------chHHHHHHHHHHHHhChhHHHHHHHHHHh----cC-CCCCHHHHHHHHHHcCCCHHHH
Confidence                            01122344444443444446677777765    33 4678899999999999998643

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=98.98  E-value=8.2e-09  Score=68.35  Aligned_cols=42  Identities=24%  Similarity=0.498  Sum_probs=35.7

Q ss_pred             EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCC
Q 030756           16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPS   59 (172)
Q Consensus        16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~   59 (172)
                      |++|+|+.|||||.+.+.+.+++...  ..+++++|+|+.+.+.
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~   42 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYAD--DGGVRVVYRPFPLLGG   42 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhc--CCcEEEEEeccccCCC
Confidence            57999999999999999999986443  3589999999987764

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=98.71  E-value=1e-07  Score=73.17  Aligned_cols=101  Identities=10%  Similarity=-0.035  Sum_probs=67.0

Q ss_pred             ceeEEEEEecCCcchhhhHHHH---HHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHH
Q 030756           13 LIRIDVSSDTVCPWCFVGKRNL---DKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEV   89 (172)
Q Consensus        13 ~~~I~~~~D~~CPwcyl~~~~L---~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   89 (172)
                      +.+|..|||+.||+|+-..+.+   +.+.+.+++  ++.++..|+.+.+.       +...                   
T Consensus        38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~~~~~f~~~-------~~~~-------------------   89 (207)
T PRK10954         38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTKYHVEFLGP-------LGKE-------------------   89 (207)
T ss_pred             CCeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEEecccccch-------hhHH-------------------
Confidence            4679999999999999887755   555555543  55665555432210       0000                   


Q ss_pred             HHhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756           90 FRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVN  163 (172)
Q Consensus        90 a~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~  163 (172)
                                         +.++..+|+..|.  ..++..++|++++. ++++.+.+.|.+++++.|+|++.++
T Consensus        90 -------------------~~~a~~~a~~~~~--~~k~~~~lf~~i~~-~~~~~~~~~L~~~a~~~Gld~~~f~  141 (207)
T PRK10954         90 -------------------LTQAWAVAMALGV--EDKVTPPLFEGVQK-TQTIQSAADIRDVFIKAGVKGEDYD  141 (207)
T ss_pred             -------------------HHHHHHHHHHhCc--HHHHHHHHHHHHHc-cCCCCCHHHHHHHHHHcCCCHHHHH
Confidence                               1122223344444  45678889999854 6799999999999999999986543

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=98.04  E-value=9.9e-06  Score=58.93  Aligned_cols=53  Identities=19%  Similarity=0.253  Sum_probs=42.5

Q ss_pred             cCCccCCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeC
Q 030756            5 VSSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLN   57 (172)
Q Consensus         5 ~~~~~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~   57 (172)
                      ++..++..+++|+.|+|+.||+|.-.+..+.++++++-+.-.+.+.++|+.+.
T Consensus         5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~   57 (162)
T PF13462_consen    5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD   57 (162)
T ss_dssp             EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS
T ss_pred             CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc
Confidence            45566778999999999999999999999999999883344799999988433

...

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.16  E-value=0.00085  Score=53.07  Aligned_cols=44  Identities=14%  Similarity=0.128  Sum_probs=33.9

Q ss_pred             cCCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeee
Q 030756            9 AGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFL   56 (172)
Q Consensus         9 ~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L   56 (172)
                      +...+.+|.+|+|+.||||--.+..+.+++.    .-+++|+|.|+.+
T Consensus       114 ~~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~----~g~V~v~~ip~~~  157 (251)
T PRK11657        114 KADAPRIVYVFADPNCPYCKQFWQQARPWVD----SGKVQLRHILVGI  157 (251)
T ss_pred             CCCCCeEEEEEECCCChhHHHHHHHHHHHhh----cCceEEEEEeccc
Confidence            3456788999999999999987777776554    2358888888643

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.07  E-value=0.0012  Score=50.05  Aligned_cols=43  Identities=21%  Similarity=0.315  Sum_probs=34.0

Q ss_pred             CCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCC
Q 030756           10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNP   58 (172)
Q Consensus        10 ~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~   58 (172)
                      ...+.+|.+|+|+.||||.-.+..+.+ .     ..++.|.+++|.+..
T Consensus        75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~-~-----~~~v~v~~~~~p~~~  117 (197)
T cd03020          75 GNGKRVVYVFTDPDCPYCRKLEKELKP-N-----ADGVTVRIFPVPILG  117 (197)
T ss_pred             CCCCEEEEEEECCCCccHHHHHHHHhh-c-----cCceEEEEEEcCcCC
Confidence            346789999999999999988877765 1     247899999886544

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=96.90  E-value=0.0023  Score=50.04  Aligned_cols=43  Identities=19%  Similarity=0.313  Sum_probs=33.3

Q ss_pred             CCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeC
Q 030756           10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLN   57 (172)
Q Consensus        10 ~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~   57 (172)
                      ...+.+|.+|+|+.||||--.+..+.++..     .+++|.+.+|.+.
T Consensus       105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~-----~~v~v~~~~~P~~  147 (232)
T PRK10877        105 PQEKHVITVFTDITCGYCHKLHEQMKDYNA-----LGITVRYLAFPRQ  147 (232)
T ss_pred             CCCCEEEEEEECCCChHHHHHHHHHHHHhc-----CCeEEEEEeccCC
Confidence            356788999999999999988877776542     3688888776553

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.73  E-value=0.028  Score=43.75  Aligned_cols=49  Identities=16%  Similarity=0.171  Sum_probs=32.9

Q ss_pred             CccCCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCC
Q 030756            7 SSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNP   58 (172)
Q Consensus         7 ~~~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~   58 (172)
                      -.+...+++|..|+|+.||||=-....+.+   .+-....+.+.+++|.+.+
T Consensus        79 ~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~---~~i~~~~~~~~~~~~~f~~  127 (244)
T COG1651          79 LGNPYAPVTVVEFFDYTCPYCKEAFPELKK---KYIDDGKVRLVLREFPFLD  127 (244)
T ss_pred             ccCCCCCceEEEEecCcCccHHHHHHHHHH---HhhhcCCCceEEEEeecCC
Confidence            334455889999999999999444444444   3333346678888886544

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=93.65  E-value=0.23  Score=32.79  Aligned_cols=33  Identities=12%  Similarity=0.053  Sum_probs=28.8

Q ss_pred             cCCcceeEEEEEecCCcchhhhHHHHHHHHHhc
Q 030756            9 AGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASS   41 (172)
Q Consensus         9 ~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~   41 (172)
                      ....+++|.+|.++.||||=...+.++++.+.+
T Consensus         9 ~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~   41 (89)
T cd03026           9 RLNGPINFETYVSLSCHNCPDVVQALNLMAVLN   41 (89)
T ss_pred             hcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHC
Confidence            356789999999999999999999999888755

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=93.35  E-value=0.13  Score=32.78  Aligned_cols=28  Identities=25%  Similarity=0.527  Sum_probs=24.6

Q ss_pred             eeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (172)
Q Consensus        14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~   42 (172)
                      ++|+||+ .-||+|-...+.+++++++++
T Consensus         1 m~i~~~a-~~C~~C~~~~~~~~~~~~e~~   28 (76)
T TIGR00412         1 MKIQIYG-TGCANCQMTEKNVKKAVEELG   28 (76)
T ss_pred             CEEEEEC-CCCcCHHHHHHHHHHHHHHcC
Confidence            3689988 999999999999999998764

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=90.48  E-value=0.48  Score=29.87  Aligned_cols=29  Identities=21%  Similarity=0.611  Sum_probs=25.6

Q ss_pred             eeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (172)
Q Consensus        14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~   42 (172)
                      ++|++|+.+-||+|--..+.|+++.++++
T Consensus         1 ~~v~~f~~~~C~~C~~~~~~l~~l~~~~~   29 (82)
T TIGR00411         1 VKIELFTSPTCPYCPAAKRVVEEVAKEMG   29 (82)
T ss_pred             CEEEEEECCCCcchHHHHHHHHHHHHHhc
Confidence            47899999999999999999999887663

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]

Probab=90.19  E-value=0.37  Score=34.58  Aligned_cols=42  Identities=26%  Similarity=0.215  Sum_probs=28.6

Q ss_pred             CCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeC
Q 030756           10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLN   57 (172)
Q Consensus        10 ~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~   57 (172)
                      .|++..+.++||-.||.|..-.+.|.+.      ..+-.+++.+....
T Consensus         4 ~~~~p~~vvlyDG~C~lC~~~vrfLi~~------D~~~~i~f~~~q~e   45 (137)
T COG3011           4 QMKKPDLVVLYDGVCPLCDGWVRFLIRR------DQGGRIRFAALQSE   45 (137)
T ss_pred             CCCCCCEEEEECCcchhHHHHHHHHHHh------ccCCcEEEEeccCc
Confidence            4566778999999999999866665542      12445666665443

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=89.73  E-value=0.57  Score=30.26  Aligned_cols=36  Identities=22%  Similarity=0.464  Sum_probs=27.0

Q ss_pred             eeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEe
Q 030756           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (172)
Q Consensus        14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~   52 (172)
                      ++|++|+=+.||||--+.+.|+++..++   .++.++.+
T Consensus         1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~---~~i~~~~i   36 (85)
T PRK11200          1 MFVVIFGRPGCPYCVRAKELAEKLSEER---DDFDYRYV   36 (85)
T ss_pred             CEEEEEeCCCChhHHHHHHHHHhhcccc---cCCcEEEE
Confidence            4799999999999999999888765432   24555544

>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]

Probab=89.20  E-value=1.1  Score=30.54  Aligned_cols=40  Identities=18%  Similarity=0.287  Sum_probs=29.3

Q ss_pred             eeEEEEEecCCcchh-hhHHHHHHHH--HhcCCCCceEEEEeeee
Q 030756           14 IRIDVSSDTVCPWCF-VGKRNLDKAI--ASSKDQYDFEIRWHPFF   55 (172)
Q Consensus        14 ~~I~~~~D~~CPwcy-l~~~~L~~~~--~~~~~~~~~~v~~~p~~   55 (172)
                      ++|++|+...||.|- .-...|..++  ..+.  .-++|+++||.
T Consensus         1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~--~~~~l~lvP~G   43 (108)
T PF03227_consen    1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLS--DIMNLTLVPFG   43 (108)
T ss_pred             CEEEEEEEecCHhHHHHHHHHHHHHHHHhhcc--ceEEEEEEEEe
Confidence            579999999999994 3355566544  3343  36899999996

It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=88.63  E-value=1.5  Score=26.61  Aligned_cols=27  Identities=22%  Similarity=0.503  Sum_probs=22.6

Q ss_pred             eeEEEEEecCCcchhhhHHHHHHHHHh
Q 030756           14 IRIDVSSDTVCPWCFVGKRNLDKAIAS   40 (172)
Q Consensus        14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~   40 (172)
                      ++|.+|+-.-||||--+.+.|+++...
T Consensus         1 ~~v~~f~~~~C~~C~~~~~~l~~l~~~   27 (67)
T cd02973           1 VNIEVFVSPTCPYCPDAVQAANRIAAL   27 (67)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence            478999999999999888888877553

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=88.58  E-value=0.87  Score=28.41  Aligned_cols=31  Identities=16%  Similarity=0.109  Sum_probs=23.5

Q ss_pred             eEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEee
Q 030756           15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHP   53 (172)
Q Consensus        15 ~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p   53 (172)
                      +|++|+-+.||||.-+...|++        .++.++++.
T Consensus         2 ~v~ly~~~~C~~C~ka~~~L~~--------~gi~~~~~d   32 (73)
T cd03027           2 RVTIYSRLGCEDCTAVRLFLRE--------KGLPYVEIN   32 (73)
T ss_pred             EEEEEecCCChhHHHHHHHHHH--------CCCceEEEE
Confidence            5889999999999987776663        366666553

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=87.39  E-value=0.73  Score=30.97  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=19.5

Q ss_pred             CcceeEEEEEecCCcchhhhHHHHHH
Q 030756           11 KKLIRIDVSSDTVCPWCFVGKRNLDK   36 (172)
Q Consensus        11 ~~~~~I~~~~D~~CPwcyl~~~~L~~   36 (172)
                      ..+..|-+|+|+-||||--..+.+.+
T Consensus         4 ~~k~~v~~F~~~~C~~C~~~~~~~~~   29 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPYCKKLEKELFP   29 (112)
T ss_dssp             TSSEEEEEEE-TT-HHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHH
Confidence            45677889999999999988777774

...

>PRK10329 glutaredoxin-like protein; Provisional

Probab=86.88  E-value=1.2  Score=28.82  Aligned_cols=31  Identities=23%  Similarity=0.480  Sum_probs=23.1

Q ss_pred             eEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEee
Q 030756           15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHP   53 (172)
Q Consensus        15 ~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p   53 (172)
                      +|++|+-..||||-.+...|.+        .++.++...
T Consensus         2 ~v~lYt~~~Cp~C~~ak~~L~~--------~gI~~~~id   32 (81)
T PRK10329          2 RITIYTRNDCVQCHATKRAMES--------RGFDFEMIN   32 (81)
T ss_pred             EEEEEeCCCCHhHHHHHHHHHH--------CCCceEEEE
Confidence            6899999999999987766643        356655543

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=86.78  E-value=2.4  Score=26.80  Aligned_cols=27  Identities=26%  Similarity=0.426  Sum_probs=22.6

Q ss_pred             eeEEEEEecCCcchhhhHHHHHHHHHhc
Q 030756           14 IRIDVSSDTVCPWCFVGKRNLDKAIASS   41 (172)
Q Consensus        14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~   41 (172)
                      ++|.+ +...||+|-.....+.+++..+
T Consensus         1 m~I~v-~~~~C~~C~~~~~~~~~~~~~~   27 (76)
T PF13192_consen    1 MKIKV-FSPGCPYCPELVQLLKEAAEEL   27 (76)
T ss_dssp             EEEEE-ECSSCTTHHHHHHHHHHHHHHT
T ss_pred             CEEEE-eCCCCCCcHHHHHHHHHHHHhc
Confidence            57888 6777999999999999888764

...

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=86.63  E-value=1.1  Score=27.74  Aligned_cols=21  Identities=24%  Similarity=0.616  Sum_probs=18.2

Q ss_pred             eEEEEEecCCcchhhhHHHHH
Q 030756           15 RIDVSSDTVCPWCFVGKRNLD   35 (172)
Q Consensus        15 ~I~~~~D~~CPwcyl~~~~L~   35 (172)
                      +|.+|+=..||||--+...|.
T Consensus         2 ~v~lys~~~Cp~C~~ak~~L~   22 (72)
T cd03029           2 SVSLFTKPGCPFCARAKAALQ   22 (72)
T ss_pred             eEEEEECCCCHHHHHHHHHHH
Confidence            588999999999998877665

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PRK10638 glutaredoxin 3; Provisional

Probab=84.58  E-value=1.3  Score=28.40  Aligned_cols=22  Identities=23%  Similarity=0.733  Sum_probs=18.2

Q ss_pred             eEEEEEecCCcchhhhHHHHHH
Q 030756           15 RIDVSSDTVCPWCFVGKRNLDK   36 (172)
Q Consensus        15 ~I~~~~D~~CPwcyl~~~~L~~   36 (172)
                      +|++|+-..||||--+...|++
T Consensus         3 ~v~ly~~~~Cp~C~~a~~~L~~   24 (83)
T PRK10638          3 NVEIYTKATCPFCHRAKALLNS   24 (83)
T ss_pred             cEEEEECCCChhHHHHHHHHHH
Confidence            6889999999999987766653

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=83.62  E-value=2.6  Score=25.07  Aligned_cols=31  Identities=23%  Similarity=0.350  Sum_probs=23.2

Q ss_pred             EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeee
Q 030756           16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF   54 (172)
Q Consensus        16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~   54 (172)
                      |.+|+-..||||--+...|++        .+++.+++-+
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~--------~~i~y~~~dv   31 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDE--------KGIPYEEVDV   31 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH--------TTBEEEEEEG
T ss_pred             cEEEEcCCCcCHHHHHHHHHH--------cCCeeeEccc
Confidence            678999999999987777653        3666666544

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=82.03  E-value=2.3  Score=26.56  Aligned_cols=21  Identities=29%  Similarity=0.638  Sum_probs=16.6

Q ss_pred             eEEEEEecCCcchhhhHHHHH
Q 030756           15 RIDVSSDTVCPWCFVGKRNLD   35 (172)
Q Consensus        15 ~I~~~~D~~CPwcyl~~~~L~   35 (172)
                      +|++|+...||||.-....|.
T Consensus         1 ~i~Ly~~~~~p~c~kv~~~L~   21 (77)
T cd03040           1 KITLYQYKTCPFCCKVRAFLD   21 (77)
T ss_pred             CEEEEEcCCCHHHHHHHHHHH
Confidence            578999999999997665444

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=82.02  E-value=2.4  Score=26.95  Aligned_cols=24  Identities=29%  Similarity=0.499  Sum_probs=20.0

Q ss_pred             cceeEEEEEecCCcchhhhHHHHH
Q 030756           12 KLIRIDVSSDTVCPWCFVGKRNLD   35 (172)
Q Consensus        12 ~~~~I~~~~D~~CPwcyl~~~~L~   35 (172)
                      ...+|++|+=..||||--+...|.
T Consensus         6 ~~~~V~ly~~~~Cp~C~~ak~~L~   29 (79)
T TIGR02190         6 KPESVVVFTKPGCPFCAKAKATLK   29 (79)
T ss_pred             CCCCEEEEECCCCHhHHHHHHHHH
Confidence            456799999999999998777665

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PF13728 TraF: F plasmid transfer operon protein

Probab=81.64  E-value=3  Score=32.19  Aligned_cols=41  Identities=20%  Similarity=0.357  Sum_probs=31.7

Q ss_pred             cceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCC
Q 030756           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNP   58 (172)
Q Consensus        12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~   58 (172)
                      ...-+-||++.-||+|-...+.|..+..+    ++++|  .|+.+++
T Consensus       120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~----yg~~v--~~vs~DG  160 (215)
T PF13728_consen  120 QKYGLFFFYRSDCPYCQQQAPILQQFADK----YGFSV--IPVSLDG  160 (215)
T ss_pred             hCeEEEEEEcCCCchhHHHHHHHHHHHHH----hCCEE--EEEecCC
Confidence            45668899999999999999999887764    46666  5566654

>COG3084 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.06  E-value=2.4  Score=27.04  Aligned_cols=39  Identities=10%  Similarity=-0.022  Sum_probs=33.0

Q ss_pred             HHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccccccc
Q 030756          129 EELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVNINHE  167 (172)
Q Consensus       129 ~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~~~~~  167 (172)
                      -.|...+|...-|++-...|..+|.++|++....++-++
T Consensus        10 lellqp~w~k~~dlnl~q~lqkla~eagf~~~l~dltdd   48 (88)
T COG3084          10 IELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDD   48 (88)
T ss_pred             HHHhhHHhccCCCccHHHHHHHHHHHhcccccHHHccch
Confidence            346677899999999999999999999999887766554

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=80.54  E-value=4.2  Score=27.78  Aligned_cols=32  Identities=16%  Similarity=0.204  Sum_probs=24.3

Q ss_pred             EEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeee
Q 030756           16 IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF   55 (172)
Q Consensus        16 I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~   55 (172)
                      |++|+-+.||+|--+...|++        .+++++++.+.
T Consensus         1 i~iY~~~~C~~c~ka~~~L~~--------~~i~~~~idi~   32 (111)
T cd03036           1 LKFYEYPKCSTCRKAKKWLDE--------HGVDYTAIDIV   32 (111)
T ss_pred             CEEEECCCCHHHHHHHHHHHH--------cCCceEEeccc
Confidence            579999999999988776663        36777776553

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=80.01  E-value=1.6  Score=27.48  Aligned_cols=22  Identities=32%  Similarity=0.585  Sum_probs=18.1

Q ss_pred             eEEEEEecCCcchhhhHHHHHH
Q 030756           15 RIDVSSDTVCPWCFVGKRNLDK   36 (172)
Q Consensus        15 ~I~~~~D~~CPwcyl~~~~L~~   36 (172)
                      +|.+|+-.-||||--+...|.+
T Consensus         1 ~v~~y~~~~Cp~C~~~~~~l~~   22 (82)
T cd03419           1 PVVVFSKSYCPYCKRAKSLLKE   22 (82)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHH
Confidence            4789999999999987766654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	172
3gl5_A	239	Crystal Structure Of Probable Dsba Oxidoreductase S		3e-09

>pdb|3GL5|A Chain A, Crystal Structure Of Probable Dsba Oxidoreductase Sco1869 From Streptomyces Coelicolor Length = 239

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 15  RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKK-DFYEN 73
           R+++ SD  CPWC+VGK   +KA+A+   +   E+    F L+P   K+ V         
Sbjct: 4   RVEIWSDIACPWCYVGKARFEKALAAFPHRDGVEVVHRSFELDPGRAKDDVQPVLTXLTA 63
Query: 74  KFG-SQNQGIIARMTEVFRGLGLEYNMSGLT--------GNTLDSHRLLYLAGQQGLDKQ 124
           K+G SQ Q            LG +    GL         G+T D HRLL+LA ++G  + 
Sbjct: 64  KYGXSQEQAQAGEDN-----LGAQAAAEGLAYRTRDRDHGSTFDLHRLLHLAKERG--RH 116
Query: 125 HNLAEELFLGYFTQGKYI 142
             L +  + G F   + +
Sbjct: 117 EALLDAFYRGNFADERSV 134

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
3gl5_A	239	Putative DSBA oxidoreductase SCO1869; probable DSB	2e-29
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	1e-25
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	9e-21
3fz5_A	202	Possible 2-hydroxychromene-2-carboxylate isomeras;	7e-06
1r4w_A	226	Glutathione S-transferase, mitochondrial; glutathi	2e-05
3rpp_A	234	Glutathione S-transferase kappa 1; glutathione tra	8e-04

>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3} Length = 239

 Score =  107 bits (267), Expect = 2e-29
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 7/136 (5%)

Query: 14  IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGV-NKKDFYE 72
           +R+++ SD  CPWC+VGK   +KA+A+   +   E+    F L+P   K+ V        
Sbjct: 3   MRVEIWSDIACPWCYVGKARFEKALAAFPHRDGVEVVHRSFELDPGRAKDDVQPVLTMLT 62

Query: 73  NKFGS---QNQGIIARMTEVFRGLGLEYNMSGLTG-NTLDSHRLLYLAGQQGLDKQHNLA 128
            K+G    Q Q     +       GL Y        +T D HRLL+LA ++   +   L 
Sbjct: 63  AKYGMSQEQAQAGEDNLGAQAAAEGLAYRTRDRDHGSTFDLHRLLHLAKER--GRHEALL 120

Query: 129 EELFLGYFTQGKYIGD 144
           +  + G F   + + +
Sbjct: 121 DAFYRGNFADERSVFN 136

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus} Length = 208

 Score = 96.6 bits (240), Expect = 1e-25
 Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 19/137 (13%)

Query: 14  IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
           I++    D +C WC+  K  ++K           +  +    L P               
Sbjct: 3   IKLYYVHDPMCSWCWGYKPTIEKLKQQLPGV--IQFEYVVGGLAPDTN----------LP 50

Query: 74  KFGSQNQGIIARMTEVFRGLGLEYNMSGL-----TGNTLDSHRLLYLAGQQGLDKQHNLA 128
                 Q +     ++   LG ++N           +T  S R +  AG Q       + 
Sbjct: 51  MPPEMQQKLEGIWKQIETQLGTKFNYDFWKLCTPVRSTYQSCRAVIAAGFQD--SYEQML 108

Query: 129 EELFLGYFTQGKYIGDK 145
           E +   Y+ +     ++
Sbjct: 109 EAIQHAYYLRAMPPHEE 125

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea} Length = 216

 Score = 83.9 bits (207), Expect = 9e-21
 Identities = 14/137 (10%), Positives = 35/137 (25%), Gaps = 17/137 (12%)

Query: 14  IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYEN 73
             +   +D +C WC+     ++             ++  P  L P      + +K     
Sbjct: 8   PVLWYIADPMCSWCWGFAPVIENIRQEYSAF--LTVKIMPGGLRPGTNTPLLPEKRAQ-- 63

Query: 74  KFGSQNQGIIARMTEVFRGLGLEYNMSGLTG-----NTLDSHRLLYLAGQQGLDKQHNLA 128
                   I+     V    G  +            +T  + R +        +K     
Sbjct: 64  --------ILHHWHSVHITTGQPFTFENALPEGFIYDTEPACRGVVSVSLIEPEKVFPFF 115

Query: 129 EELFLGYFTQGKYIGDK 145
             +   ++   + +   
Sbjct: 116 AAIQRAFYVGQEDVAQL 132

>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2} Length = 202

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 29/135 (21%)

Query: 21  DTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFL-------NPSAPKEGVNKKDFYEN 73
           D    + F   + ++        +    + W P+ L                 K+D+   
Sbjct: 12  DFSSGYAFFAAQRIEAL----AAELGRTVLWRPYMLGAAFSVTGARGLSSTPLKRDY--- 64

Query: 74  KFGSQNQGIIARMTEVFR---GLGLEYNM-SGLTGNTLDSHRLLYLAGQQGLDKQHNLAE 129
                         +  R     GL +   +      L + R  Y    Q  D     A+
Sbjct: 65  -----------AQRDWARIARQRGLTFRPPADHPHVALAATRAFYWIEAQSPDAATAFAQ 113

Query: 130 ELFLGYFTQGKYIGD 144
            +F  YF+       
Sbjct: 114 RVFDLYFSDRLDTAS 128

>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13 Length = 226

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 17/133 (12%), Positives = 49/133 (36%), Gaps = 20/133 (15%)

Query: 21  DTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFL-------NPSAPKEGVNKKDF--Y 71
           D + P+ ++G     + +   +  ++ +++  P  L           P    +K  +   
Sbjct: 13  DVLSPYSWLGF----EVLCRYQHLWNIKLKLRPALLAGIMKDSGNQPPAMVPHKGQYILK 68

Query: 72  ENKFGSQNQGIIARMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEEL 131
           E     Q   +   + + F G         +   T+++ R L     +  +    ++ EL
Sbjct: 69  EIPLLKQLFQVPMSVPKDFFG-------EHVKKGTVNAMRFLTAVSMEQPEMLEKVSREL 121

Query: 132 FLGYFTQGKYIGD 144
           ++  +++ + I +
Sbjct: 122 WMRIWSRDEDITE 134

>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A* Length = 234

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 14/137 (10%), Positives = 44/137 (32%), Gaps = 28/137 (20%)

Query: 21  DTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFL-------NPSAPKEGVNKKDFYEN 73
           D + P+ ++G     + +   ++ ++  ++  P  +           P     K  +  N
Sbjct: 13  DVLSPYSWLGF----EILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLPRKGLYMAN 68

Query: 74  KFGSQNQGIIARMTEVFRGLGLEYNM------SGLTGNTLDSHRLLYLAGQQGLDKQHNL 127
                    +  +        +  +         L   +L + R L     +  +     
Sbjct: 69  D--------LKLLRHHL---QIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKA 117

Query: 128 AEELFLGYFTQGKYIGD 144
           + EL++  +++ + I +
Sbjct: 118 SRELWMRVWSRNEDITE 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
3gl5_A	239	Putative DSBA oxidoreductase SCO1869; probable DSB	100.0
3fz5_A	202	Possible 2-hydroxychromene-2-carboxylate isomeras;	100.0
3rpp_A	234	Glutathione S-transferase kappa 1; glutathione tra	100.0
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	99.97
1r4w_A	226	Glutathione S-transferase, mitochondrial; glutathi	99.97
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	99.97
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	99.94
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	99.7
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	99.66
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	99.56
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	99.56
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	99.56
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	99.45
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	99.45
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	99.4
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	99.4
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	99.38
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	99.29
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	99.28
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	99.25
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	99.21
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	99.13
1z6m_A	175	Conserved hypothetical protein; structural genomic	99.1
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	98.82
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	97.33
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	97.29
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	96.78
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	96.59
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	96.41
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	95.82
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	94.76
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	92.43
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	91.63
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	91.06
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	89.88
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	89.78
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	89.44
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	88.05
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	84.79
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	84.31
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	82.78
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	82.74
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	82.74
2ko6_A	89	Uncharacterized protein YIHD; alpha protein, struc	81.81
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	81.8
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	81.63
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	81.33
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	81.03
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	80.85
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	80.51
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	80.4

>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}

Probab=100.00  E-value=9.4e-37  Score=237.72  Aligned_cols=148  Identities=26%  Similarity=0.430  Sum_probs=135.4

Q ss_pred             ceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCC-CCHHHHHHHHhCC---cHHHHHHHHHH
Q 030756           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEG-VNKKDFYENKFGS---QNQGIIARMTE   88 (172)
Q Consensus        13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~l~~   88 (172)
                      +++|+||||++|||||+|+++|++++++|+++++++|+||||.|+|+++.+| .+..+++.+|+|.   +.+++..++++
T Consensus         2 ~~~I~~~~D~~cPwcyig~~~l~~a~~~~~~~~~v~v~~~P~~L~p~~~~~g~~~~~~~~~~k~g~~~~~~~~~~~~~~r   81 (239)
T 3gl5_A            2 HMRVEIWSDIACPWCYVGKARFEKALAAFPHRDGVEVVHRSFELDPGRAKDDVQPVLTMLTAKYGMSQEQAQAGEDNLGA   81 (239)
T ss_dssp             CEEEEEEECSSCHHHHHHHHHHHHHHHTCTTGGGEEEEEEECCSCTTCCTTCCEEHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEEEeCcCHhHHHHHHHHHHHHHhcCccCceEEEEEEeccccCCCCCCCCCHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999999998876679999999999999998764 5677888889984   67788999999


Q ss_pred             HHHhcCCccccCCC-CCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHhcCCCcccc
Q 030756           89 VFRGLGLEYNMSGL-TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGD-KCAYFSFDEFFFFFPSLV  162 (172)
Q Consensus        89 ~a~~~Gi~~~~~~~-~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd-~~vL~~ia~~~Gld~~~~  162 (172)
                      +++.+|++|++++. +.||.+|||++.+|+++|.  ..++.++||+++|.+|+||+| +++|.++|+++|||++.+
T Consensus        82 ~a~~~Gl~f~~~~~~~~nt~~a~r~~~~A~~~g~--~~~~~~alf~a~~~~g~~i~d~~~~L~~~a~~~Gld~~~~  155 (239)
T 3gl5_A           82 QAAAEGLAYRTRDRDHGSTFDLHRLLHLAKERGR--HEALLDAFYRGNFADERSVFNDDERLVELAVGAGLDAEEV  155 (239)
T ss_dssp             HHHHTTCCCCCSSCEECCCHHHHHHHHHHHTTTC--HHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHcCCCccCCCCCCCChHHHHHHHHHHHhhCc--HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCHHHH
Confidence            99999999999865 5899999999999999987  899999999999999999999 999999999999998754

>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}

Probab=100.00  E-value=4.3e-35  Score=222.71  Aligned_cols=142  Identities=15%  Similarity=0.187  Sum_probs=116.5

Q ss_pred             ceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHh
Q 030756           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRG   92 (172)
Q Consensus        13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~   92 (172)
                      +++|+||||++|||||+|+++|+++++++    +++|+||||.|++.++.+|.........    +.+++..+++++++.
T Consensus         4 ~~~I~~~~D~~cPwcyi~~~~l~~~~~~~----~~~v~~~p~~L~~~~~~~g~~~~~~~~~----k~~~~~~~~~r~a~~   75 (202)
T 3fz5_A            4 MNPIEFWFDFSSGYAFFAAQRIEALAAEL----GRTVLWRPYMLGAAFSVTGARGLSSTPL----KRDYAQRDWARIARQ   75 (202)
T ss_dssp             CSCEEEEECTTCHHHHHHHTTHHHHHHHH----TCCEEEEECTTC----------CCSHHH----HHHHHHHHHHHHHHH
T ss_pred             CceeEEEEeCCCHHHHHHHHHHHHHHHHh----CCeEEEEeeeccchhhhcCCCCcccCcH----HHHHHHHHHHHHHHH
Confidence            46799999999999999999999999854    7999999999999987766533222222    246788999999999


Q ss_pred             cCCccccCCC-CCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756           93 LGLEYNMSGL-TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV  162 (172)
Q Consensus        93 ~Gi~~~~~~~-~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~  162 (172)
                      +|++|+++.. +.||.+|||++.+|+++|+++..++.++||+++|.+|+||+|+++|.++|+++|||++.+
T Consensus        76 ~G~~f~~~~~~~~~t~~a~r~~~~a~~~g~~~~~~~~~alf~a~~~~g~~i~~~~~L~~~a~~~Gld~~~~  146 (202)
T 3fz5_A           76 RGLTFRPPADHPHVALAATRAFYWIEAQSPDAATAFAQRVFDLYFSDRLDTASPEAVSRLGPEVGLEPEAL  146 (202)
T ss_dssp             HTCCCCCCTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCCCTTCHHHHHTTHHHHTCCHHHH
T ss_pred             hCCCCCCCCCCCCChHHHHHHHHHHHhhCchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHH
Confidence            9999998764 579999999999999998666999999999999999999999999999999999998754

>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*

Probab=100.00  E-value=8.1e-34  Score=220.45  Aligned_cols=141  Identities=10%  Similarity=0.151  Sum_probs=116.1

Q ss_pred             cceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHHH
Q 030756           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR   91 (172)
Q Consensus        12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~   91 (172)
                      .+++|+||||++|||||+|+++|+++++    +++++|+|+||.|++.++..|+........    +..++..+++++++
T Consensus         4 ~~~~I~~~~D~~CPwcyi~~~~L~~~~~----~~~v~v~~~p~~L~~~~~~~g~~~~~~~~~----k~~y~~~~~~r~a~   75 (234)
T 3rpp_A            4 LPRTVELFYDVLSPYSWLGFEILCRYQN----IWNINLQLRPSLITGIMKDSGNKPPGLLPR----KGLYMANDLKLLRH   75 (234)
T ss_dssp             CCEEEEEEECTTCHHHHHHHHHHHHHTT----TSSEEEEEEECCHHHHCC----CCCSSSCH----HHHHHHHHHHHHHH
T ss_pred             CCceEEEEEeCCCHHHHHHHHHHHHHHH----HcCCeEEEEEeecchhhhhcCCCCcccChH----HHHHHHHHHHHHHH
Confidence            4588999999999999999999998875    458999999999998776543321100111    24567889999999


Q ss_pred             hcCCccccCCCC-C-----ChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcc
Q 030756           92 GLGLEYNMSGLT-G-----NTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPS  160 (172)
Q Consensus        92 ~~Gi~~~~~~~~-~-----~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~  160 (172)
                      .+|++|+++..+ .     ||.+|+|++.+|+++++++..++.++||+++|.+|+||+|+++|.++|+++|||++
T Consensus        76 ~~G~~f~~~~~~~~~~~~~nt~~a~r~~~aa~~~~~~~~~~~~~al~~A~~~~g~di~d~~~L~~~a~~~GLd~~  150 (234)
T 3rpp_A           76 HLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRELWMRVWSRNEDITEPQSILAAAEKAGMSAE  150 (234)
T ss_dssp             HHTCCCCCCSSCHHHHHHHCSHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHH
T ss_pred             HhCCCCCCCCCCcccccCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHH
Confidence            999999987643 3     99999999999987755568999999999999999999999999999999999984

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=99.97  E-value=6.1e-30  Score=194.73  Aligned_cols=135  Identities=16%  Similarity=0.198  Sum_probs=115.7

Q ss_pred             eeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHhc
Q 030756           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRGL   93 (172)
Q Consensus        14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~   93 (172)
                      ++|++|||++|||||++.++|+++.++|+  .+++|+|+|+.|.+..+. +.+  .   .    ...++..+++++++.+
T Consensus         3 ~~I~~~~D~~CP~cy~~~~~l~~l~~~~~--~~v~v~~~p~~L~~~~~~-~~~--~---~----~~~~~~~~~~r~a~~~   70 (208)
T 3kzq_A            3 IKLYYVHDPMCSWCWGYKPTIEKLKQQLP--GVIQFEYVVGGLAPDTNL-PMP--P---E----MQQKLEGIWKQIETQL   70 (208)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHSC--TTSEEEEEECCSSCSCCC-BCC--H---H----HHHHHHHHHHHHHHHH
T ss_pred             eEEEEEECCCCchhhhhhHHHHHHHHhCC--CCceEEEEecccccCCCC-CCC--H---H----HHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999885  379999999999876422 111  1   0    1234567888999999


Q ss_pred             CCccccC-----CCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756           94 GLEYNMS-----GLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV  162 (172)
Q Consensus        94 Gi~~~~~-----~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~  162 (172)
                      |++|+++     ..+.||.+|+|++.+|+++|.  ..++.++||+++|.+|+||+|+++|.++|+++|||++.+
T Consensus        71 G~~f~~~~~~~~~~~~~s~~a~r~~~aa~~~g~--~~~~~~~l~~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~  142 (208)
T 3kzq_A           71 GTKFNYDFWKLCTPVRSTYQSCRAVIAAGFQDS--YEQMLEAIQHAYYLRAMPPHEEATHLQLAKEIGLNVQQF  142 (208)
T ss_dssp             CCCCCTTHHHHSCCBCCCHHHHHHHHHHHTTTC--HHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHTTCCHHHH
T ss_pred             CCcccHHHHhcCCCcCCcHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHH
Confidence            9999987     345899999999999999998  789999999999999999999999999999999998754

>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13

Probab=99.97  E-value=1e-30  Score=201.58  Aligned_cols=139  Identities=12%  Similarity=0.177  Sum_probs=114.4

Q ss_pred             ceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHh
Q 030756           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRG   92 (172)
Q Consensus        13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~   92 (172)
                      +++|++|+|++|||||++.++|+++.+    +++++|+||||.|++.++..|.........    +..++..+++++++.
T Consensus         5 ~~~I~~~~D~~CP~Cy~~~~~l~~l~~----~~~~~v~~~p~~L~~~~~~~g~~~~~~~~~----~~~~~~~~~~r~a~~   76 (226)
T 1r4w_A            5 PRVLELFYDVLSPYSWLGFEVLCRYQH----LWNIKLKLRPALLAGIMKDSGNQPPAMVPH----KGQYILKEIPLLKQL   76 (226)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHTT----TSSEEEEEEECCHHHHHHHTTCCCTTSSHH----HHHHHHHHHHHHHHH
T ss_pred             CceEEEEEeCCChHHHHHHHHHHHHHH----HcCCeEEEEeeecccchhccCCCCcccChH----HHHHHHHHHHHHHHH
Confidence            478999999999999999999998765    458999999999987554333111000011    245678899999999


Q ss_pred             cCCccccCCCC------CChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCc
Q 030756           93 LGLEYNMSGLT------GNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFP  159 (172)
Q Consensus        93 ~Gi~~~~~~~~------~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~  159 (172)
                      +|++|++++.+      .||..|+|++.+|+++|+++..++.++||+++|.+|+||+|+++|.++|+++|||.
T Consensus        77 ~G~~~~~~~~~~~~~~~~~s~~a~r~~~aa~~~g~~~~~~~~~alf~a~~~~~~~i~~~~~L~~~a~~~Gl~~  149 (226)
T 1r4w_A           77 FQVPMSVPKDFFGEHVKKGTVNAMRFLTAVSMEQPEMLEKVSRELWMRIWSRDEDITESQNILSAAEKAGMAT  149 (226)
T ss_dssp             HTCCCCCCSSTTTHHHHHCSHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCH
T ss_pred             hCCCCCCCCccccccCCCCCHHHHHHHHHHHhhChHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCc
Confidence            99999986532      48999999999999988766799999999999999999999999999999999964

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*

Probab=99.97  E-value=1.8e-31  Score=202.54  Aligned_cols=138  Identities=12%  Similarity=0.102  Sum_probs=116.3

Q ss_pred             eeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCC--cHHHHHHHHHHHHH
Q 030756           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGS--QNQGIIARMTEVFR   91 (172)
Q Consensus        14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~a~   91 (172)
                      ++|++|+|+.|||||++.++|+++++++    +++|+||||.|++.++.+|...... .   |.  +..++..+++++++
T Consensus         1 m~I~~~~D~~CP~cy~~~~~l~~~~~~~----~~~v~~~p~~L~~~~~~~g~~~~~~-~---g~~~~~~~~~~~~~~~a~   72 (203)
T 2imf_A            1 MIVDFYFDFLSPFSYLANQRLSKLAQDY----GLTIRYNAIDLARVKIAIGNVGPSN-R---DLKVKLDYLKVDLQRWAQ   72 (203)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHH----CCEEEEEECCHHHHHHHHTCCSCCG-G---GCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHHHHHc----CCeEEEEeeecchhhHhhCCCCccc-c---cChHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999865    5899999999887654322211100 0   11  34667899999999


Q ss_pred             hcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756           92 GLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV  162 (172)
Q Consensus        92 ~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~  162 (172)
                      .+|++|+++. +.||.+|++++.+|+.+|.  ..++.++||+++|.+|+||+|+++|.++|+++|||++.+
T Consensus        73 ~~G~~~~~~~-~~~t~~a~r~~~~a~~~g~--~~~~~~~lf~a~~~~~~~i~~~~~L~~~a~~~Gld~~~~  140 (203)
T 2imf_A           73 LYGIPLVFPA-NYNSRRMNIGFYYSGAEAQ--AAAYVNVVFNAVWGEGIAPDLESLPALVSEKLGWDRSAF  140 (203)
T ss_dssp             HHTCCCCCCS-CCCCHHHHHHGGGCCSHHH--HHHHHHHHHHHHHHSCCCTTCTTHHHHHHHHHTCCHHHH
T ss_pred             HcCCCCCCCC-CCChHHHHHHHHHHhCcCh--HHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHH
Confidence            9999999888 9999999999999988775  899999999999999999999999999999999998644

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=99.94  E-value=1.3e-26  Score=176.60  Aligned_cols=140  Identities=11%  Similarity=0.106  Sum_probs=109.2

Q ss_pred             CcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHH
Q 030756           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVF   90 (172)
Q Consensus        11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a   90 (172)
                      |++++|++|+|+.|||||++.+.+.++.+ +. ..+++|+|+||.|.+..+.. .. ..        ...++..++.+++
T Consensus         5 m~~~~I~~f~D~~CP~C~~~~~~~~~l~~-~~-~~~v~v~~~~~~l~~~~~~~-~~-~~--------~~~~~~~~~~r~a   72 (216)
T 2in3_A            5 MEKPVLWYIADPMCSWCWGFAPVIENIRQ-EY-SAFLTVKIMPGGLRPGTNTP-LL-PE--------KRAQILHHWHSVH   72 (216)
T ss_dssp             -CCCEEEEEECTTCHHHHHHHHHHHHHHH-HH-TTTCEEEEEECC----CCSB-CC-HH--------HHHHHHHHHHHHH
T ss_pred             ccceeEEEEECCCCchhhcchHHHHHHHh-cC-CCCeEEEEeecccccCCCCC-CC-HH--------HHHHHHHHHHHHH
Confidence            44689999999999999987777776555 42 23699999999998765321 11 11        1245567889999


Q ss_pred             HhcCCccccC-----CCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756           91 RGLGLEYNMS-----GLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV  162 (172)
Q Consensus        91 ~~~Gi~~~~~-----~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~  162 (172)
                      +.+|++|+++     +...||..|++++.+|+.+++.+.++|.++||+++|.+|+||+|+++|.++|+++|||++.+
T Consensus        73 ~~~g~~~~~~~~~~~~~~~~s~~a~r~~~~a~~~~~~~~~~~~~~lf~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~  149 (216)
T 2in3_A           73 ITTGQPFTFENALPEGFIYDTEPACRGVVSVSLIEPEKVFPFFAAIQRAFYVGQEDVAQLAILKKLAVDLGIPESRF  149 (216)
T ss_dssp             HHHCCCCCCTTCSCTTCBCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTTCCCTTSHHHHHHHHHHTTCCHHHH
T ss_pred             HHHCCccChHHHccCCcccCcHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHH
Confidence            9999999864     24589999999999999885555899999999999999999999999999999999998654

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=99.70  E-value=1.3e-16  Score=118.74  Aligned_cols=110  Identities=13%  Similarity=0.038  Sum_probs=87.9

Q ss_pred             CccCCcceeEEEEEecCCcchhhhHHHHH-HHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHH
Q 030756            7 SSAGKKLIRIDVSSDTVCPWCFVGKRNLD-KAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIAR   85 (172)
Q Consensus         7 ~~~~~~~~~I~~~~D~~CPwcyl~~~~L~-~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (172)
                      ..+...+++|++|+|+.|||||.+.+.+. .+.++|.+..++.|+|+||.+.+                           
T Consensus         6 ~G~~~a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~p~~~---------------------------   58 (186)
T 3bci_A            6 TSSKNGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLG---------------------------   58 (186)
T ss_dssp             -----CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEECCCSC---------------------------
T ss_pred             cCCCCCCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEecCcCC---------------------------
Confidence            34556789999999999999999999985 45566765457999999985431                           


Q ss_pred             HHHHHHhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccc
Q 030756           86 MTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSL  161 (172)
Q Consensus        86 l~~~a~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~  161 (172)
                                        .+|..+++++.++..+|+++.++|.++||++.+.+|.++.+.++|.++|+++|||.+.
T Consensus        59 ------------------~~s~~aa~a~~~a~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~  116 (186)
T 3bci_A           59 ------------------KDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKET  116 (186)
T ss_dssp             ------------------TTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCCTTSCCCCHHHHHHHHHTTCCCHHH
T ss_pred             ------------------cchHHHHHHHHHHHHhCHHHHHHHHHHHHhcCcccCCCCCCHHHHHHHHHHcCCCHHH
Confidence                              1345567788888777866799999999999999999999999999999999999875

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=99.66  E-value=1.7e-15  Score=112.77  Aligned_cols=102  Identities=15%  Similarity=0.063  Sum_probs=84.5

Q ss_pred             CcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHH
Q 030756           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVF   90 (172)
Q Consensus        11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a   90 (172)
                      ..+++|.+|+|+.|||||.+.+.|.+++++++.  ++.+++.|+.+.+                                
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~~~~~--------------------------------   69 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK--DVRFTLVPAVFGG--------------------------------   69 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT--TEEEEEEECCCST--------------------------------
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC--ceEEEEeCcccCC--------------------------------
Confidence            457899999999999999999999999887753  5677666764321                                


Q ss_pred             HhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHhcCCCcccc
Q 030756           91 RGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGK---YIGDKCAYFSFDEFFFFFPSLV  162 (172)
Q Consensus        91 ~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~---disd~~vL~~ia~~~Gld~~~~  162 (172)
                                    ++..+++++.+|+.+|.  ..+|.++||+++|.+|.   ++++.++|.++++++|+|.+.+
T Consensus        70 --------------~s~~a~~a~~~a~~~~~--~~~~~~~lf~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~  128 (193)
T 2rem_A           70 --------------VWDPFARAYLAADVLGV--AKRSHTAMFEAIHEKGSVPIQNVGPDELAVFYAGYGVQPDRF  128 (193)
T ss_dssp             --------------THHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTCCSCSTTCCHHHHHHHHHTTTCCHHHH
T ss_pred             --------------CcHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHhcccCcCCCCHHHHHHHHHHcCCCHHHH
Confidence                          13446777778888877  88999999999999999   9999999999999999998643

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=99.56  E-value=2.5e-14  Score=106.63  Aligned_cols=102  Identities=11%  Similarity=0.035  Sum_probs=82.6

Q ss_pred             CcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHH
Q 030756           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVF   90 (172)
Q Consensus        11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a   90 (172)
                      ..+++|..|+|+.||+|+-..+.|.++.+++++  ++.+++.|+.+.+                                
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~~~~~--------------------------------   69 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA--DVHFVRLPALFGG--------------------------------   69 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECCCST--------------------------------
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC--CeEEEEEehhhcc--------------------------------
Confidence            467899999999999999999999998887754  5666655553221                                


Q ss_pred             HhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756           91 RGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV  162 (172)
Q Consensus        91 ~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~  162 (172)
                                    ++..+++++.+|+.+|.  .++|.++||+++|.+|+++++.++|.++++++|||.+.+
T Consensus        70 --------------~~~~aa~a~~aa~~~g~--~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~  125 (192)
T 3h93_A           70 --------------IWNVHGQMFLTLESMGV--EHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKF  125 (192)
T ss_dssp             --------------HHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHTSCCCCCSHHHHHHHHHTTTCCHHHH
T ss_pred             --------------chHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHcCCCHHHH
Confidence                          11234566777777787  889999999999999999999999999999999997654

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=99.56  E-value=3.7e-14  Score=105.76  Aligned_cols=104  Identities=14%  Similarity=0.055  Sum_probs=82.6

Q ss_pred             ccCCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHH
Q 030756            8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMT   87 (172)
Q Consensus         8 ~~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (172)
                      .+...+++|.+|+|+.|||||...+.|.++.++++.  ++.++..|+.+.+                             
T Consensus        18 g~~~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~~~~~-----------------------------   66 (195)
T 2znm_A           18 QEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS--DAYLRTEHVVWQP-----------------------------   66 (195)
T ss_dssp             CSSSSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT--TEEEEEEECCCSG-----------------------------
T ss_pred             CCCCCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC--ceEEEEeccccCc-----------------------------
Confidence            344568899999999999999999999999887753  4444444432110                             


Q ss_pred             HHHHhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhc-CCCccc
Q 030756           88 EVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFF-FFFPSL  161 (172)
Q Consensus        88 ~~a~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~-Gld~~~  161 (172)
                                       +|..+++++.+|+.+|.  .++|.+++|+++|.+|.++++.++|.+++++. |+|.+.
T Consensus        67 -----------------~s~~aa~a~~aa~~~~~--~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~~Gld~~~  122 (195)
T 2znm_A           67 -----------------EMLGLARMAAAVNLSGL--KYQANPAVFKAVYEQKIRLENRSVAGKWALSQKGFDGKK  122 (195)
T ss_dssp             -----------------GGHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCSSCTTSHHHHHHHHHTCSSSCHHH
T ss_pred             -----------------ccHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHcCCCCHHH
Confidence                             12345677777777777  89999999999999999999999999999999 999764

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=99.56  E-value=1.9e-14  Score=107.07  Aligned_cols=112  Identities=13%  Similarity=0.172  Sum_probs=78.3

Q ss_pred             ceeEEEEEecCCcchhhhHHHH-HHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHHH
Q 030756           13 LIRIDVSSDTVCPWCFVGKRNL-DKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR   91 (172)
Q Consensus        13 ~~~I~~~~D~~CPwcyl~~~~L-~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~   91 (172)
                      ...|+ |+|+.|||||.+.+.+ .++.++++    .+|+|+|+.+...    +. ....        .......+...++
T Consensus        19 ~~~ie-f~d~~CP~C~~~~~~l~~~l~~~~~----~~v~~~~~~l~~~----~~-~~~~--------~~~~~~~~~~~~~   80 (195)
T 3c7m_A           19 KTLIK-VFSYACPFCYKYDKAVTGPVSEKVK----DIVAFTPFHLETK----GE-YGKQ--------ASEVFAVLINKDK   80 (195)
T ss_dssp             TEEEE-EECTTCHHHHHHHHHTHHHHHHHTT----TTCEEEEEECTTS----ST-THHH--------HHHHHHHHHHHHH
T ss_pred             cEEEE-EEeCcCcchhhCcHHHHHHHHHhCC----CceEEEEEecCcc----cc-ccHH--------HHHHHHHHHHhhh
Confidence            34455 6789999999999999 88777653    3466777766543    11 1111        1222334455566


Q ss_pred             hcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHH----HHhcCCCcccc
Q 030756           92 GLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSF----DEFFFFFPSLV  162 (172)
Q Consensus        92 ~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~i----a~~~Gld~~~~  162 (172)
                      ..|++ +++        +|+           ...+|.++||+++|.+|+|++|+++|.++    ++++|||++.+
T Consensus        81 ~~~~~-~~~--------~~~-----------~~~~~~~~l~~a~~~~~~~~~~~~~l~~~~~~~a~~~Gld~~~~  135 (195)
T 3c7m_A           81 AAGIS-LFD--------ANS-----------QFKKAKFAYYAAYHDKKERWSDGKDPAAFIKTGLDAAGMSQADF  135 (195)
T ss_dssp             HTTCC-TTS--------TTC-----------HHHHHHHHHHHHHHTSCCCTTTTTCHHHHHHHHHHHHTCCHHHH
T ss_pred             hcCCC-chh--------HHH-----------HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhHHHHcCCCHHHH
Confidence            67776 432        222           25789999999999999999999999999    99999998643

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=99.45  E-value=4e-13  Score=101.57  Aligned_cols=111  Identities=13%  Similarity=0.030  Sum_probs=82.8

Q ss_pred             CccCCcceeEEEEEecCCcchhhhHHHHH-HHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHH
Q 030756            7 SSAGKKLIRIDVSSDTVCPWCFVGKRNLD-KAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIAR   85 (172)
Q Consensus         7 ~~~~~~~~~I~~~~D~~CPwcyl~~~~L~-~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (172)
                      ..++..+++|..|+|+.||+|+-..+.+. .+.+.|.+.-++.++|+|+.+.+         .                 
T Consensus        24 ~G~~~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~~~---------~-----------------   77 (202)
T 3gha_A           24 LGKDDAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHG---------K-----------------   77 (202)
T ss_dssp             ESCTTCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECCCSH---------H-----------------
T ss_pred             ecCCCCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecCccc---------h-----------------
Confidence            34556789999999999999998877764 44456754457999999986421         0                 


Q ss_pred             HHHHHHhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHh-cCCCcccc
Q 030756           86 MTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEF-FFFFPSLV  162 (172)
Q Consensus        86 l~~~a~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~-~Gld~~~~  162 (172)
                                         +|..|.+++.++..+++++.++|.++||++.+.++.++.+.++|.++|++ +|||.+.+
T Consensus        78 -------------------~s~~Aa~aa~a~~~~~~~~f~~~~~aLf~~~~~~~~~~~~~~~L~~~a~~~~Gld~~~~  136 (202)
T 3gha_A           78 -------------------GSRLAALASEEVWKEDPDSFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETL  136 (202)
T ss_dssp             -------------------HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHCCSSSSCCCCHHHHHHHHHHHSSSCHHHH
T ss_pred             -------------------hHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHhcCCCHHHH
Confidence                               01123344444433344559999999999999999999999999999999 99998754

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=99.45  E-value=6e-13  Score=99.70  Aligned_cols=102  Identities=17%  Similarity=0.089  Sum_probs=80.4

Q ss_pred             CcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHH
Q 030756           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVF   90 (172)
Q Consensus        11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a   90 (172)
                      ..+++|..|+|+.||+|+-..+.|.++.+++++  ++.+...|+...+                                
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~--~v~~~~~p~~~~~--------------------------------   68 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD--DMYLRTEHVVWQK--------------------------------   68 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCT--TEEEEEEECCCSG--------------------------------
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCC--CeEEEEecCCCCc--------------------------------
Confidence            357899999999999999999999998877754  4555544443111                                


Q ss_pred             HhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHH--HHHHHHHHHhcCCCCCCCHHHHHHHHHhc-CCCcccc
Q 030756           91 RGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHN--LAEELFLGYFTQGKYIGDKCAYFSFDEFF-FFFPSLV  162 (172)
Q Consensus        91 ~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~--~~~al~~a~~~eg~disd~~vL~~ia~~~-Gld~~~~  162 (172)
                                    ++..+.+++.+|+.+|.  .++  +.++||+++|.++.+++|.++|.++++++ |||++.+
T Consensus        69 --------------~~~~aa~a~~aa~~~g~--~~~~~~~~~lf~a~~~~~~~~~~~~~l~~~a~~~~Gld~~~~  127 (193)
T 3hz8_A           69 --------------EMLTLARLAAAVDMAAA--DSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTAFDGKKV  127 (193)
T ss_dssp             --------------GGHHHHHHHHHHHHHTG--GGHHHHHHHHHHHHHTSCCCTTSHHHHHHHHHHCTTTTHHHH
T ss_pred             --------------ccHHHHHHHHHHHHcCc--hhHHhHHHHHHHHHHHhCcCCCCHHHHHHHHHHccCCCHHHH
Confidence                          11234667777778887  555  99999999999999999999999999999 9998754

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=99.40  E-value=1.8e-12  Score=97.16  Aligned_cols=102  Identities=9%  Similarity=-0.043  Sum_probs=80.1

Q ss_pred             cceeEEEEEecCCcchhhhHHHH---HHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHH
Q 030756           12 KLIRIDVSSDTVCPWCFVGKRNL---DKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTE   88 (172)
Q Consensus        12 ~~~~I~~~~D~~CPwcyl~~~~L---~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   88 (172)
                      .+++|..|+|+.||+|+-..+.|   .++.+.+++  ++.++++|+.+...                             
T Consensus        21 ~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~--~v~~~~~~~~~~~~-----------------------------   69 (191)
T 3l9s_A           21 GEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPE--GTKMTKYHVEFLGP-----------------------------   69 (191)
T ss_dssp             SSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCT--TCCEEEEECSSSST-----------------------------
T ss_pred             CCCeEEEEECCCChhHHHhChhccchHHHHHhCCC--CcEEEEEecccccc-----------------------------
Confidence            36789999999999999988876   578887764  57788887754210                             


Q ss_pred             HHHhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756           89 VFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVN  163 (172)
Q Consensus        89 ~a~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~  163 (172)
                                      .+..+.++..+|+.+|.  ..+|.++||+++|.++. ++++++|.++++++|||++.++
T Consensus        70 ----------------~s~~aa~a~~aA~~~g~--~~~~~~~lf~a~~~~~~-~~~~~~L~~~a~~~Gld~~~~~  125 (191)
T 3l9s_A           70 ----------------LGKELTQAWAVAMALGV--EDKVTVPLFEAVQKTQT-VQSAADIRKVFVDAGVKGEDYD  125 (191)
T ss_dssp             ----------------THHHHHHHHHHHHHHTC--HHHHHHHHHHHHHTSCC-CSSHHHHHHHHHHTTCCHHHHH
T ss_pred             ----------------cCHHHHHHHHHHHHcCc--HHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence                            11223455666777787  67899999999999998 9999999999999999987543

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=99.40  E-value=1.7e-12  Score=96.79  Aligned_cols=101  Identities=16%  Similarity=0.129  Sum_probs=79.7

Q ss_pred             CcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHH
Q 030756           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVF   90 (172)
Q Consensus        11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a   90 (172)
                      ..+++|..|+|+.||+|+-..+.|.++.+++++  ++.+...|+...+                                
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~~~~~~~--------------------------------   69 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ--DVVLKQVPIAFNA--------------------------------   69 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECCSSG--------------------------------
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC--CeEEEEEecccCc--------------------------------
Confidence            357889999999999999999999999887754  5666655553211                                


Q ss_pred             HhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756           91 RGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV  162 (172)
Q Consensus        91 ~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~  162 (172)
                                    ++..+.+++.+++.+|   .+++.++||+++|.+|.++++.++|.++++++|+|++.+
T Consensus        70 --------------~s~~aa~a~~aa~~~g---~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~  124 (195)
T 3hd5_A           70 --------------GMKPLQQLYYTLQALE---RPDLHPKVFTAIHTERKRLFDKKAMGEWAASQGVDRAKF  124 (195)
T ss_dssp             --------------GGHHHHHHHHHHHHTT---CTTHHHHHHHHHHTSCCCCCSHHHHHHHHHHTTCCHHHH
T ss_pred             --------------chHHHHHHHHHHHhcC---HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHH
Confidence                          1223455566666666   578999999999999999999999999999999998644

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=99.38  E-value=2.4e-12  Score=95.87  Aligned_cols=107  Identities=9%  Similarity=0.004  Sum_probs=83.4

Q ss_pred             CcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHH
Q 030756           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVF   90 (172)
Q Consensus        11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a   90 (172)
                      ..+++|..|+|+.||||.-..+.+.+.++++ ..-.+.++||+|.+...                               
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~-~~g~v~~v~r~~p~~~h-------------------------------   60 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKAFFKLDDLLAQA-GEDNVTVRIRLQSQPWH-------------------------------   60 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHTTHHHHHHHH-CTTTEEEEEEECCCTTS-------------------------------
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHh-CCCCEEEEEEEcCCCCC-------------------------------
Confidence            4679999999999999999999998888876 12368899998754211                               


Q ss_pred             HhcCCccccCCCCCChHHHHHHHHHHhhcCc--hHHHHHHHHHHHH---H-hc-----CCCCCCCHHHHHHHHHhcCCCc
Q 030756           91 RGLGLEYNMSGLTGNTLDSHRLLYLAGQQGL--DKQHNLAEELFLG---Y-FT-----QGKYIGDKCAYFSFDEFFFFFP  159 (172)
Q Consensus        91 ~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~--~~~~~~~~al~~a---~-~~-----eg~disd~~vL~~ia~~~Gld~  159 (172)
                                   .+|..++|+..+|..+++  ++.++|.++||+.   + |.     .++|+++.++|.++|+.+|||.
T Consensus        61 -------------~~s~~aaraa~aa~~~~~~~~~f~~~~~aLf~~q~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~  127 (182)
T 3gn3_A           61 -------------MFSGVIVRCILAAATLEGGKESAKAVMTAVASHREEFEFEHHAGGPNLDATPNDIIARIERYSGLAL  127 (182)
T ss_dssp             -------------TTHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTGGGGSCBTTTBSGGGGCCHHHHHHHHHHHHTCCC
T ss_pred             -------------ccHHHHHHHHHHHHHhccChHHHHHHHHHHHhcCcccccccccccccCCCCHHHHHHHHHHHhCCCH
Confidence                         123445677777776643  5789999999997   3 43     3589999999999999999998


Q ss_pred             ccc
Q 030756          160 SLV  162 (172)
Q Consensus       160 ~~~  162 (172)
                      +.+
T Consensus       128 ~~~  130 (182)
T 3gn3_A          128 AEA  130 (182)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=99.29  E-value=2.3e-11  Score=89.00  Aligned_cols=100  Identities=10%  Similarity=0.072  Sum_probs=78.0

Q ss_pred             ccCCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHH
Q 030756            8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMT   87 (172)
Q Consensus         8 ~~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (172)
                      .+...+++|..|+|+.||||+-..+.|.++.++++   ++.|.|+++.+..                             
T Consensus        18 G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~---~v~~~~~~~p~~~-----------------------------   65 (175)
T 3gyk_A           18 GNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP---NVRLVYREWPILG-----------------------------   65 (175)
T ss_dssp             ECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TEEEEEEECCCSC-----------------------------
T ss_pred             CCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCC---CEEEEEEeCCCCC-----------------------------
Confidence            44567899999999999999999999999988765   4888888875421                             


Q ss_pred             HHHHhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756           88 EVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV  162 (172)
Q Consensus        88 ~~a~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~  162 (172)
                                      .+|..+++++.++..+|.  .++|.+++|.    ++.++ +.++|.++++++|+|.+.+
T Consensus        66 ----------------~~s~~aa~~~~~a~~~~~--~~~~~~~lf~----~~~~~-~~~~l~~~a~~~Gld~~~~  117 (175)
T 3gyk_A           66 ----------------EGSDFAARAALAARQQGK--YEAFHWALMG----MSGKA-NETGVLRIAREVGLDTEQL  117 (175)
T ss_dssp             ----------------HHHHHHHHHHHHGGGGTC--HHHHHHHHHT----CSSCC-SHHHHHHHHHHTTCCHHHH
T ss_pred             ----------------CChHHHHHHHHHHHHHhH--HHHHHHHHHh----cCCCC-CHHHHHHHHHHcCCCHHHH
Confidence                            023446778888887776  7777776654    56666 7899999999999998754

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=99.28  E-value=1.4e-11  Score=91.88  Aligned_cols=100  Identities=8%  Similarity=-0.100  Sum_probs=77.7

Q ss_pred             ceeEEEEEecCCcchhhhHHHH---HHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHH
Q 030756           13 LIRIDVSSDTVCPWCFVGKRNL---DKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEV   89 (172)
Q Consensus        13 ~~~I~~~~D~~CPwcyl~~~~L---~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   89 (172)
                      .++|..|+|+.||+|+-..+.+   .++.+.+++  ++.+.++++.+..      .                        
T Consensus        15 ~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~------~------------------------   62 (189)
T 3l9v_A           15 APAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQ--GSRMVKYHVSLLG------P------------------------   62 (189)
T ss_dssp             CCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCT--TCCEEEEECSSSS------T------------------------
T ss_pred             CCEEEEEECCCChhHHHHhHhccchHHHHHhCCC--CCEEEEEechhcc------c------------------------
Confidence            4677888899999999988875   455555643  6888888876421      0                        


Q ss_pred             HHhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhc-CCCcccc
Q 030756           90 FRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFF-FFFPSLV  162 (172)
Q Consensus        90 a~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~-Gld~~~~  162 (172)
                                     ++..+++++.+|+.+|.  .++|.+++|+++|.++. +.++++|.++++++ |||++.+
T Consensus        63 ---------------~s~~aa~a~~aA~~~g~--~~~~~~~lf~a~~~~~~-~~~~~~l~~~a~~~~Gld~~~~  118 (189)
T 3l9v_A           63 ---------------LGHELTRAWALAMVMKE--TDVIEKAFFTAGMVEKR-LHSPDDVRRVFMSATGISRGEY  118 (189)
T ss_dssp             ---------------THHHHHHHHHHHHHHTC--HHHHHHHHHHHHTTTCC-CCSHHHHHHHHHHHHCCCHHHH
T ss_pred             ---------------ccHHHHHHHHHHHHcCc--HHHHHHHHHHHHhhhcc-CCCHHHHHHHHHHccCCCHHHH
Confidence                           12234566667777887  78899999999999998 99999999999999 9998754

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=99.25  E-value=5.5e-12  Score=93.91  Aligned_cols=102  Identities=16%  Similarity=0.060  Sum_probs=77.6

Q ss_pred             cceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHHH
Q 030756           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR   91 (172)
Q Consensus        12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~   91 (172)
                      .+++|..|||+.||+|+-..+.+.++.+.+    ++.+...|+...+                                 
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~----~v~~~~~p~~~~~---------------------------------   64 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA----GTDIGKMHITFNQ---------------------------------   64 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH----TSCCEEEECCSSS---------------------------------
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh----CCeEEEEeccCCc---------------------------------
Confidence            367899999999999999999999888866    4566666654221                                 


Q ss_pred             hcCCccccCCCCCChHHHHHHHHHHhhc-CchHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHhcCC-Cccccc
Q 030756           92 GLGLEYNMSGLTGNTLDSHRLLYLAGQQ-GLDKQHNLAEELFLGYFTQGK--YIGDKCAYFSFDEFFFF-FPSLVN  163 (172)
Q Consensus        92 ~~Gi~~~~~~~~~~s~~A~r~~~~a~~~-g~~~~~~~~~al~~a~~~eg~--disd~~vL~~ia~~~Gl-d~~~~~  163 (172)
                                   ++..+.++..+|+.+ |....+++.++||+++|.++.  |++++++|.++++++|| |++.++
T Consensus        65 -------------~~~~aa~a~~Aa~~q~g~~~~~~~~~~lf~a~~~~~~~~~~~~~~~L~~~a~~~Gl~d~~~~~  127 (185)
T 3feu_A           65 -------------SAHIASMFYYAAEMQVDGAPDHAFMEDLFAATQMGEGTTLTEQQEAYSKAFTSRGLVSPYDFN  127 (185)
T ss_dssp             -------------HHHHHHHHHHHHHTTSSSSCCHHHHHHHHHHHTCCTTSCHHHHHHHHHHHHHTTTCCCGGGCC
T ss_pred             -------------cchHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence                         011235556666554 432257899999999999987  79999999999999999 887654

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=99.21  E-value=1.9e-11  Score=93.91  Aligned_cols=109  Identities=15%  Similarity=0.053  Sum_probs=77.9

Q ss_pred             CCccCCcceeEEEEEecCCcchhhhHHHH-HHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHH
Q 030756            6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNL-DKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIA   84 (172)
Q Consensus         6 ~~~~~~~~~~I~~~~D~~CPwcyl~~~~L-~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (172)
                      ...++..+++|..|+|+.||+|+-..+.+ .++.++|.+.-++.+.|++|.+.+           .              
T Consensus        33 ~~G~~~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~p~~~-----------~--------------   87 (226)
T 3f4s_A           33 LLGDPKAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPLDY-----------R--------------   87 (226)
T ss_dssp             EESCTTCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEECCCSH-----------H--------------
T ss_pred             ccCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeCCCCh-----------h--------------
Confidence            44556678999999999999999988764 566667754447999999986521           0              


Q ss_pred             HHHHHHHhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHhcCCCcccc
Q 030756           85 RMTEVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGK-YIGDKCAYFSFDEFFFFFPSLV  162 (172)
Q Consensus        85 ~l~~~a~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~-disd~~vL~~ia~~~Gld~~~~  162 (172)
                                           |..|++++.++..+  ++.++|.++||++.-..+. ++++.++|.++|+++|||++.+
T Consensus        88 ---------------------s~~Aa~aa~aa~~~--~~f~~~~~aLF~~q~~~~~~~~~~~~~L~~iA~~~Gld~~~~  143 (226)
T 3f4s_A           88 ---------------------GLKAAMLSHCYEKQ--EDYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAF  143 (226)
T ss_dssp             ---------------------HHHHHHHGGGCCSH--HHHHHHHHHHHHTGGGSCSSSTTCCHHHHHHHHHTTCCHHHH
T ss_pred             ---------------------HHHHHHHHHHhhCh--HHHHHHHHHHHHhCHhhcccccCcHHHHHHHHHHcCCCHHHH
Confidence                                 11233444444333  3489999999998543322 3789999999999999998754

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=99.13  E-value=4.7e-10  Score=82.11  Aligned_cols=104  Identities=8%  Similarity=-0.082  Sum_probs=78.5

Q ss_pred             cceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHHH
Q 030756           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR   91 (172)
Q Consensus        12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~   91 (172)
                      .+++|.-|+|+.||||+-.++.+.++++++.+  ++.+.++|+.+...      +.                        
T Consensus        21 ~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~------~~------------------------   68 (184)
T 4dvc_A           21 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPE--GAKFQKNHVSFMGG------NM------------------------   68 (184)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHTSCT--TCEEEEEECSSSSG------GG------------------------
T ss_pred             CCCEEEEEECCCCHhHHHHhHHHHHHHhhcCC--ceEEEEEecCCCCC------ch------------------------
Confidence            45678889999999999999999999998865  56666666543211      00                        


Q ss_pred             hcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756           92 GLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVN  163 (172)
Q Consensus        92 ~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~  163 (172)
                                    +..+.++..++...|.  ...+...+|.+.+.++.+..+.+.|.+++++.|+|.+.++
T Consensus        69 --------------~~~~a~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~  124 (184)
T 4dvc_A           69 --------------GQAMSKAYATMIALEV--EDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFD  124 (184)
T ss_dssp             --------------HHHHHHHHHHHHHHTC--HHHHHHHHHHHHHTSCCCCSSHHHHHHHHHTTTCCHHHHH
T ss_pred             --------------HHHHHHHHHHHHHcCc--HHHHHHHHHHHHHHHhhccchHHHHHHHHHHhCCCHHHHH
Confidence                          0112333444555666  7889999999999999999999999999999999987543

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=99.10  E-value=3.6e-10  Score=82.60  Aligned_cols=106  Identities=9%  Similarity=0.066  Sum_probs=70.9

Q ss_pred             ccCCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHH
Q 030756            8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMT   87 (172)
Q Consensus         8 ~~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (172)
                      .+...+++|.+|+|+.||||+...+.+.+++++|-+..++.|.|+||.+.+.      ...   ..           .  
T Consensus        23 G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~---~a-----------~--   80 (175)
T 1z6m_A           23 GESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKE------SLQ---RG-----------N--   80 (175)
T ss_dssp             SCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCST------TTH---HH-----------H--
T ss_pred             CCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCCCCcc------cHH---HH-----------H--
Confidence            3445689999999999999999999999988877212369999999876531      000   00           0  


Q ss_pred             HHHHhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH-HhcCCCcc
Q 030756           88 EVFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFD-EFFFFFPS  160 (172)
Q Consensus        88 ~~a~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia-~~~Gld~~  160 (172)
                                          .+++   ++...+.++.++|.++||++....+ ++ +.+.|.+++ +++|+|.+
T Consensus        81 --------------------~~~~---~~~~~~~~~~~~~~~~lf~~~~~~~-~~-~~~~l~~~a~~~~Gld~~  129 (175)
T 1z6m_A           81 --------------------VMHH---YIDYSAPEQALSALHKMFATQDEWG-NL-TLEEVATYAEKNLGLKEQ  129 (175)
T ss_dssp             --------------------HHHT---TCCTTCHHHHHHHHHHHHHTHHHHT-TS-CHHHHHHHHHHTSCCCCC
T ss_pred             --------------------HHHH---HHHhcChHHHHHHHHHHHHcChhhc-cC-CHHHHHHHHHHhcCCCcc
Confidence                                0011   1112233447899999999764434 34 677888876 57899874

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=98.82  E-value=6.2e-09  Score=78.70  Aligned_cols=51  Identities=12%  Similarity=0.059  Sum_probs=40.9

Q ss_pred             CCccCCcceeEEEEEecCCcchhhhHHHHHHHHH-hcCCCCceEEEEeeeee
Q 030756            6 SSSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIA-SSKDQYDFEIRWHPFFL   56 (172)
Q Consensus         6 ~~~~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~-~~~~~~~~~v~~~p~~L   56 (172)
                      ...++..+++|..|+|+.||+|--..+.+...++ +|-+.-.+.++|++|.|
T Consensus         9 ~~G~~~a~vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~pl   60 (205)
T 3gmf_A            9 LLGNPAAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFVR   60 (205)
T ss_dssp             EESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEECCC
T ss_pred             eecCCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhccCCeEEEEEEeCCC
Confidence            3455678999999999999999998887877776 67444579999999854

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=97.33  E-value=0.00029  Score=52.45  Aligned_cols=81  Identities=15%  Similarity=0.113  Sum_probs=56.6

Q ss_pred             cceeEEEEEecCCcchhhhHHHH---HHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHH
Q 030756           12 KLIRIDVSSDTVCPWCFVGKRNL---DKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTE   88 (172)
Q Consensus        12 ~~~~I~~~~D~~CPwcyl~~~~L---~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   88 (172)
                      .+++|.-|||+-||+|+-..+.+   +++.+.+++  ++.+...|+...+.         .                   
T Consensus       113 ~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~--~v~~~~~~v~~~~~---------~-------------------  162 (197)
T 1un2_A          113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE--GVKMTKYHVNFMGG---------D-------------------  162 (197)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT--TCCEEEEECSSSSH---------H-------------------
T ss_pred             CCCEEEEEECCCChhHHHhCcccccHHHHHHHCCC--CCEEEEeccCcCCc---------c-------------------
Confidence            34678888899999999988887   877776653  56776666543210         0                   


Q ss_pred             HHHhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCC
Q 030756           89 VFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGK  140 (172)
Q Consensus        89 ~a~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~  140 (172)
                                      ++..+.++..+++..|.  .+++..+||++...+..
T Consensus       163 ----------------~~~~~a~a~~aa~~~g~--~~~~~~~lF~ai~~~~~  196 (197)
T 1un2_A          163 ----------------LGKDLTQAWAVAMALGV--EDKVTVPLFEGVQKTLI  196 (197)
T ss_dssp             ----------------HHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHTTC-
T ss_pred             ----------------chHHHHHHHHHHHHcCC--HHHhhHHHHHHHHHHcC
Confidence                            01224566677778887  88999999999876643

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=97.29  E-value=0.00039  Score=53.21  Aligned_cols=44  Identities=16%  Similarity=0.164  Sum_probs=36.2

Q ss_pred             cCCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeee
Q 030756            9 AGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFL   56 (172)
Q Consensus         9 ~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L   56 (172)
                      +...+++|..|+|+.||||.-..+.+.++++.    .++.|.|++|.+
T Consensus        94 ~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~----g~v~v~~~~~p~  137 (241)
T 1v58_A           94 KKDAPVIVYVFADPFCPYCKQFWQQARPWVDS----GKVQLRTLLVGV  137 (241)
T ss_dssp             CTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT----TSEEEEEEECCC
T ss_pred             CCCCCeEEEEEECCCChhHHHHHHHHHHHHhC----CcEEEEEEECCc
Confidence            34567899999999999999999998887763    368999998854

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=96.78  E-value=0.0014  Score=49.04  Aligned_cols=43  Identities=16%  Similarity=0.308  Sum_probs=34.8

Q ss_pred             CCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeC
Q 030756           10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLN   57 (172)
Q Consensus        10 ~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~   57 (172)
                      ...+++|..|+|+-||||.-.++.|+++.+     .++.|.|+.|.+.
T Consensus        84 ~~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~-----~~v~v~~~~~p~~  126 (211)
T 1t3b_A           84 KNEKHVVTVFMDITCHYCHLLHQQLKEYND-----LGITVRYLAFPRA  126 (211)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHTTHHHHHH-----TTEEEEEEECCSS
T ss_pred             CCCCEEEEEEECCCCHhHHHHHHHHHHHHh-----CCcEEEEEECCcc
Confidence            356789999999999999999998888553     2688988877543

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=96.59  E-value=0.0014  Score=46.56  Aligned_cols=41  Identities=22%  Similarity=0.420  Sum_probs=31.5

Q ss_pred             CCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeC
Q 030756           10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLN   57 (172)
Q Consensus        10 ~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~   57 (172)
                      ...+++|.+|+|+.||||--..+.|.+    ++   ++.|.|+.|.+.
T Consensus        12 ~~a~~~vv~f~D~~Cp~C~~~~~~l~~----l~---~v~v~~~~~P~~   52 (147)
T 3gv1_A           12 GNGKLKVAVFSDPDCPFCKRLEHEFEK----MT---DVTVYSFMMPIA   52 (147)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHHHHTT----CC---SEEEEEEECCCT
T ss_pred             CCCCEEEEEEECCCChhHHHHHHHHhh----cC---ceEEEEEEcccc
Confidence            456789999999999999987766543    32   588888877653

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=96.41  E-value=0.0023  Score=50.06  Aligned_cols=39  Identities=21%  Similarity=0.280  Sum_probs=31.0

Q ss_pred             CcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeee
Q 030756           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFF   55 (172)
Q Consensus        11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~   55 (172)
                      ..+.+|.+|+|+.||||--.++.|++.+.      ++.|+|.+|.
T Consensus       146 ~gk~~I~vFtDp~CPYCkkl~~~l~~~l~------~~~Vr~i~~P  184 (273)
T 3tdg_A          146 NKDKILYIVSDPMCPHCQKELTKLRDHLK------ENTVRMVVVG  184 (273)
T ss_dssp             GTTCEEEEEECTTCHHHHHHHHTHHHHHH------HCEEEEEECC
T ss_pred             CCCeEEEEEECcCChhHHHHHHHHHHHhh------CCcEEEEEee
Confidence            45688999999999999999988887664      3667776543

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=95.82  E-value=0.0096  Score=44.49  Aligned_cols=42  Identities=19%  Similarity=0.296  Sum_probs=34.0

Q ss_pred             CCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeee
Q 030756           10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFL   56 (172)
Q Consensus        10 ~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L   56 (172)
                      ...+++|..|+|+-||+|.-.++.|.++..    . ++.|.++.|.+
T Consensus        84 ~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~----~-~v~v~~~~~p~  125 (216)
T 1eej_A           84 PQEKHVITVFTDITCGYCHKLHEQMADYNA----L-GITVRYLAFPR  125 (216)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHTTHHHHHH----T-TEEEEEEECCT
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHh----C-CcEEEEEECCc
Confidence            346788999999999999999988888654    2 68888887654

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=94.76  E-value=0.072  Score=32.63  Aligned_cols=39  Identities=21%  Similarity=0.537  Sum_probs=30.8

Q ss_pred             CcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEE
Q 030756           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (172)
Q Consensus        11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~   51 (172)
                      |+.++|.+|+.+-||+|--..+.|+++.+++++  ++.+..
T Consensus         1 m~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~   39 (85)
T 1fo5_A            1 MSKVKIELFTSPMCPHCPAAKRVVEEVANEMPD--AVEVEY   39 (85)
T ss_dssp             CCCEEEEEEECCCSSCCCTHHHHHHHHHHHCSS--SEEEEE
T ss_pred             CCceEEEEEeCCCCCchHHHHHHHHHHHHHcCC--ceEEEE
Confidence            345789999999999999999999998887753  455444

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=92.43  E-value=0.097  Score=33.87  Aligned_cols=24  Identities=17%  Similarity=0.405  Sum_probs=19.9

Q ss_pred             ceeEEEEEecCCcchhhhHHHHHH
Q 030756           13 LIRIDVSSDTVCPWCFVGKRNLDK   36 (172)
Q Consensus        13 ~~~I~~~~D~~CPwcyl~~~~L~~   36 (172)
                      ...|++|+-+.||||--+...|.+
T Consensus         3 ta~I~vYs~~~Cp~C~~aK~~L~~   26 (92)
T 2lqo_A            3 TAALTIYTTSWCGYCLRLKTALTA   26 (92)
T ss_dssp             SSCEEEEECTTCSSHHHHHHHHHH
T ss_pred             CCcEEEEcCCCCHhHHHHHHHHHh
Confidence            456999999999999987776654

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=91.63  E-value=0.18  Score=30.67  Aligned_cols=36  Identities=22%  Similarity=0.507  Sum_probs=28.8

Q ss_pred             eeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEE
Q 030756           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (172)
Q Consensus        14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~   51 (172)
                      ++|.+|+.+-||+|--..+.++++.+++++  ++.+..
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~   38 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGD--KIDVEK   38 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCS--SCCEEE
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcC--CeEEEE
Confidence            568899999999999999999998887753  344433

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=91.06  E-value=0.28  Score=32.65  Aligned_cols=35  Identities=14%  Similarity=0.047  Sum_probs=28.1

Q ss_pred             CccCCcceeEEEEEecCCcchhhhHHHHHHHHHhc
Q 030756            7 SSAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASS   41 (172)
Q Consensus         7 ~~~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~   41 (172)
                      |...+...+|.+|+-+-||+|-.+.+.|+++.+++
T Consensus        23 ~~~~~~m~~vv~y~~~~C~~C~~a~~~L~~l~~e~   57 (107)
T 2fgx_A           23 MNNQVEPRKLVVYGREGCHLCEEMIASLRVLQKKS   57 (107)
T ss_dssp             CCCCCCCCCEEEEECSSCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCccEEEEEeCCCChhHHHHHHHHHHHHHhc
Confidence            33334556799999999999999999999987754

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=89.88  E-value=0.5  Score=28.86  Aligned_cols=35  Identities=20%  Similarity=0.501  Sum_probs=26.9

Q ss_pred             eeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEE
Q 030756           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (172)
Q Consensus        14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~   51 (172)
                      ++|.+|+-.-||+|--+.+.|+++..++.   ++.+..
T Consensus         1 m~v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~   35 (85)
T 1ego_A            1 MQTVIFGRSGCPYCVRAKDLAEKLSNERD---DFQYQY   35 (85)
T ss_dssp             CEEEEECCTTSTHHHHHHHHHHHHHHHHS---SCEEEE
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHhcCC---CceEEE
Confidence            46888999999999999999988776542   455544

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=89.78  E-value=0.21  Score=30.91  Aligned_cols=22  Identities=18%  Similarity=0.711  Sum_probs=18.2

Q ss_pred             eeEEEEEecCCcchhhhHHHHH
Q 030756           14 IRIDVSSDTVCPWCFVGKRNLD   35 (172)
Q Consensus        14 ~~I~~~~D~~CPwcyl~~~~L~   35 (172)
                      ++|.+|+.+.||+|.-+...|.
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~   25 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFE   25 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHH
T ss_pred             eEEEEEEcCCChhHHHHHHHHH
Confidence            5699999999999997666554

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=89.44  E-value=0.43  Score=28.45  Aligned_cols=28  Identities=18%  Similarity=0.385  Sum_probs=24.5

Q ss_pred             eeEEEEEecCCcchhhhHHHHHHHHHhcC
Q 030756           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSK   42 (172)
Q Consensus        14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~   42 (172)
                      ++|+||.+ -||.|-...+.++++.+.++
T Consensus         2 ~~v~f~a~-wC~~C~~~~~~l~~~~~~~~   29 (77)
T 1ilo_A            2 MKIQIYGT-GCANCQMLEKNAREAVKELG   29 (77)
T ss_dssp             EEEEEECS-SSSTTHHHHHHHHHHHHHTT
T ss_pred             cEEEEEcC-CChhHHHHHHHHHHHHHHcC
Confidence            57999997 99999999999999888764

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=88.05  E-value=0.53  Score=28.69  Aligned_cols=33  Identities=15%  Similarity=0.375  Sum_probs=25.4

Q ss_pred             eEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEE
Q 030756           15 RIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (172)
Q Consensus        15 ~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~   51 (172)
                      +|++|+-+-||+|-.+.+.|+++++    +.+++++.
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~----~~~~~~~~   35 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAID----PSKYTVEI   35 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSC----TTTEEEEE
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHH----hcCCeEEE
Confidence            5889999999999999988887664    34555544

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=84.79  E-value=1  Score=28.00  Aligned_cols=32  Identities=19%  Similarity=0.135  Sum_probs=22.6

Q ss_pred             eEEEEEec----CCcchhhhHHHHHHHHHhcCCCCceEEEEeee
Q 030756           15 RIDVSSDT----VCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF   54 (172)
Q Consensus        15 ~I~~~~D~----~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~   54 (172)
                      +|.+|+-.    .||||.-+...|++        .+++++++.+
T Consensus         1 ~v~iY~~~~~~~~Cp~C~~ak~~L~~--------~gi~y~~idI   36 (87)
T 1aba_A            1 MFKVYGYDSNIHKCGPCDNAKRLLTV--------KKQPFEFINI   36 (87)
T ss_dssp             CEEEEECCTTTSCCHHHHHHHHHHHH--------TTCCEEEEES
T ss_pred             CEEEEEeCCCCCcCccHHHHHHHHHH--------cCCCEEEEEe
Confidence            36788888    99999987766653        3566666544

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=84.31  E-value=1.2  Score=34.68  Aligned_cols=31  Identities=16%  Similarity=0.204  Sum_probs=26.2

Q ss_pred             CcceeEEEEEecCCcchhhhHHHHHHHHHhc
Q 030756           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASS   41 (172)
Q Consensus        11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~   41 (172)
                      .++++|++|+-..||||--+...|.+...++
T Consensus        41 ~~~~~VelyTs~gCp~C~~Ak~lL~~~~~~~   71 (270)
T 2axo_A           41 AVKGVVELFTSQGCASCPPADEALRKMIQKG   71 (270)
T ss_dssp             CCCCEEEEEECTTCTTCHHHHHHHHHHHHHT
T ss_pred             CCCcEEEEEeCCCCCChHHHHHHHHHhhccC
Confidence            3458999999999999999999998876543

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=82.78  E-value=0.62  Score=29.07  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=17.8

Q ss_pred             eEEEEEecCCcchhhhHHHHHH
Q 030756           15 RIDVSSDTVCPWCFVGKRNLDK   36 (172)
Q Consensus        15 ~I~~~~D~~CPwcyl~~~~L~~   36 (172)
                      +|.+|+.+.||+|.-+...|.+
T Consensus        13 ~v~ly~~~~Cp~C~~~~~~L~~   34 (92)
T 3ic4_A           13 EVLMYGLSTCPHCKRTLEFLKR   34 (92)
T ss_dssp             SSEEEECTTCHHHHHHHHHHHH
T ss_pred             eEEEEECCCChHHHHHHHHHHH
Confidence            4788999999999987766654

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=82.74  E-value=2  Score=26.85  Aligned_cols=32  Identities=16%  Similarity=0.090  Sum_probs=26.6

Q ss_pred             cceeEEEEEecCCcchhhhHHHHHHHHHhcCC
Q 030756           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (172)
Q Consensus        12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~   43 (172)
                      .+..+-+|+..-||+|--..+.+.++.+.+++
T Consensus        19 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~   50 (106)
T 3die_A           19 SGVQLVDFWATACGPCKMIAPVLEELAADYEG   50 (106)
T ss_dssp             SSEEEEEEECSBCHHHHHHHHHHHHHHHHTTT
T ss_pred             CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC
Confidence            44567777789999999999999999988764

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=82.74  E-value=1.1  Score=28.86  Aligned_cols=26  Identities=19%  Similarity=0.503  Sum_probs=21.8

Q ss_pred             CcceeEEEEEecCCcchhhhHHHHHH
Q 030756           11 KKLIRIDVSSDTVCPWCFVGKRNLDK   36 (172)
Q Consensus        11 ~~~~~I~~~~D~~CPwcyl~~~~L~~   36 (172)
                      ....+|.+|+-+-||||--+...|++
T Consensus        13 ~~~~~v~vy~~~~Cp~C~~ak~~L~~   38 (99)
T 3qmx_A           13 AVSAKIEIYTWSTCPFCMRALALLKR   38 (99)
T ss_dssp             CCCCCEEEEECTTCHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEcCCChhHHHHHHHHHH
Confidence            45678999999999999988877765

>2ko6_A Uncharacterized protein YIHD; alpha protein, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}

Probab=81.81  E-value=1.5  Score=27.64  Aligned_cols=38  Identities=11%  Similarity=-0.015  Sum_probs=32.3

Q ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccccccc
Q 030756          130 ELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVNINHE  167 (172)
Q Consensus       130 al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~~~~~  167 (172)
                      .|..-+|....|++-.+.|..+|+++|++....++.++
T Consensus        11 ELL~p~W~k~~dLnL~q~Lqkla~Eagf~g~l~~LtDd   48 (89)
T 2ko6_A           11 ELLQPAWQKEPDFNLLQFLQKLAKESGFDGELADLTDD   48 (89)
T ss_dssp             HHTHHHHHSSTTSCHHHHHHHHHHHTTCSSCTTSCCHH
T ss_pred             HHhcHHhhcCCCccHHHHHHHHHHHhCCCCchhhcccc
Confidence            45567899999999999999999999999877666554

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=81.80  E-value=2.1  Score=26.90  Aligned_cols=32  Identities=16%  Similarity=0.070  Sum_probs=25.9

Q ss_pred             cceeEEEEEecCCcchhhhHHHHHHHHHhcCC
Q 030756           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (172)
Q Consensus        12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~   43 (172)
                      .+..+-+|+..-||+|-...+.+.++.+.+++
T Consensus        19 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~   50 (107)
T 1dby_A           19 SVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD   50 (107)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT
T ss_pred             CCcEEEEEECCCCHhHHHHHHHHHHHHHHhCC
Confidence            34556677789999999999999998887754

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=81.63  E-value=0.99  Score=26.65  Aligned_cols=22  Identities=27%  Similarity=0.579  Sum_probs=17.7

Q ss_pred             eEEEEEecCCcchhhhHHHHHH
Q 030756           15 RIDVSSDTVCPWCFVGKRNLDK   36 (172)
Q Consensus        15 ~I~~~~D~~CPwcyl~~~~L~~   36 (172)
                      +|.+|+...||+|.-....|++
T Consensus         2 ~i~~y~~~~C~~C~~~~~~l~~   23 (75)
T 1r7h_A            2 SITLYTKPACVQCTATKKALDR   23 (75)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHH
T ss_pred             eEEEEeCCCChHHHHHHHHHHH
Confidence            5789999999999976666553

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.33  E-value=2.2  Score=27.98  Aligned_cols=17  Identities=12%  Similarity=0.036  Sum_probs=14.8

Q ss_pred             ceeEEEEEecCCcchhh
Q 030756           13 LIRIDVSSDTVCPWCFV   29 (172)
Q Consensus        13 ~~~I~~~~D~~CPwcyl   29 (172)
                      .++|.+|+-..||+|-.
T Consensus         7 ~m~V~vy~~~~C~~C~~   23 (111)
T 2ct6_A            7 GMVIRVFIASSSGFVAI   23 (111)
T ss_dssp             CCCEEEEECSSCSCHHH
T ss_pred             ccEEEEEEcCCCCCccc
Confidence            46799999999999993

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=81.03  E-value=2.3  Score=26.58  Aligned_cols=32  Identities=13%  Similarity=0.089  Sum_probs=26.5

Q ss_pred             cceeEEEEEecCCcchhhhHHHHHHHHHhcCC
Q 030756           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (172)
Q Consensus        12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~   43 (172)
                      .+..|-+|+..-||+|--..+.+.++.+.+++
T Consensus        21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~   52 (109)
T 3tco_A           21 NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG   52 (109)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT
T ss_pred             CCeEEEEEECCCCHHHHhhhHHHHHHHHHhCC
Confidence            34557777889999999999999999888764

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=80.85  E-value=4.3  Score=27.72  Aligned_cols=39  Identities=15%  Similarity=0.123  Sum_probs=29.6

Q ss_pred             CcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEe
Q 030756           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWH   52 (172)
Q Consensus        11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~   52 (172)
                      ..+..|-+|+..-||.|-...+.|.++.++|+   ++.|...
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~---~v~vv~i   74 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR---EISVIAI   74 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT---TEEEEEE
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC---CcEEEEE
Confidence            33566777779999999999999999988774   4555443

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=80.51  E-value=2.7  Score=26.61  Aligned_cols=32  Identities=13%  Similarity=0.036  Sum_probs=26.4

Q ss_pred             cceeEEEEEecCCcchhhhHHHHHHHHHhcCC
Q 030756           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (172)
Q Consensus        12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~   43 (172)
                      .+..|-+|+..-||+|--..+.+.++.+.+++
T Consensus        25 ~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~   56 (115)
T 1thx_A           25 EQPVLVYFWASWCGPCQLMSPLINLAANTYSD   56 (115)
T ss_dssp             SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT
T ss_pred             CceEEEEEECCCCHHHHHhHHHHHHHHHHhCC
Confidence            44567778889999999999999998887753

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=80.40  E-value=2.5  Score=26.28  Aligned_cols=32  Identities=9%  Similarity=-0.019  Sum_probs=26.0

Q ss_pred             cceeEEEEEecCCcchhhhHHHHHHHHHhcCC
Q 030756           12 KLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (172)
Q Consensus        12 ~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~   43 (172)
                      .+..+-+|+..-||+|-...+.+.++.+.+++
T Consensus        18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~   49 (105)
T 1fb6_A           18 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG   49 (105)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT
T ss_pred             CCcEEEEEECCCChHHHHHHHHHHHHHHHhcC
Confidence            34557777789999999999999998887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	172
d1r4wa_	221	c.47.1.13 (A:) Mitochondrial class kappa glutathio	4e-13

>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Mitochondrial class kappa glutathione S-transferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.7 bits (151), Expect = 4e-13
 Identities = 16/131 (12%), Positives = 48/131 (36%), Gaps = 6/131 (4%)

Query: 16  IDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKF 75
           +++  D + P+ ++G   L +        ++ +++  P  L       G        +K 
Sbjct: 7   LELFYDVLSPYSWLGFEVLCRYQH----LWNIKLKLRPALLAGIMKDSGNQPPAMVPHKG 62

Query: 76  GSQNQGIIARMTEVFRGLGLEYNMSGLTG--NTLDSHRLLYLAGQQGLDKQHNLAEELFL 133
               + I          + +  +  G      T+++ R L     +  +    ++ EL++
Sbjct: 63  QYILKEIPLLKQLFQVPMSVPKDFFGEHVKKGTVNAMRFLTAVSMEQPEMLEKVSRELWM 122

Query: 134 GYFTQGKYIGD 144
             +++ + I +
Sbjct: 123 RIWSRDEDITE 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1r4wa_	221	Mitochondrial class kappa glutathione S-transferas	99.94
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	98.89
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	98.0
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.93
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	97.9
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	97.67
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.48
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.47
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	91.47
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	90.59
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	90.0
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	89.33
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	89.07
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	87.25
d1k0da2	92	Yeast prion protein ure2p, nitrogen regulation fra	86.51
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	85.55
d1z9ha2	113	Microsomal prostaglandin E synthase-2 {Crab-eating	84.67
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	83.14
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	82.11

>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Mitochondrial class kappa glutathione S-transferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=8.6e-28  Score=181.06  Aligned_cols=141  Identities=12%  Similarity=0.179  Sum_probs=107.6

Q ss_pred             ceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHh
Q 030756           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFRG   92 (172)
Q Consensus        13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~   92 (172)
                      +.+|+||+|++|||||+|.++|+++++    +++++|+||||.|++.++..+.........    .......+..+++..
T Consensus         4 ~k~I~~y~D~~sP~~Yl~~~~l~~l~~----~~~v~i~~rP~~L~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~   75 (221)
T d1r4wa_           4 PRVLELFYDVLSPYSWLGFEVLCRYQH----LWNIKLKLRPALLAGIMKDSGNQPPAMVPH----KGQYILKEIPLLKQL   75 (221)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHTT----TSSEEEEEEECCHHHHHHHTTCCCTTSSHH----HHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHH----HcCCEEEEEEEeccccchhccccchhhhhh----hhhhhHHHHHHHHHh
Confidence            348999999999999999999998775    568999999999987654443322111111    123445667778888


Q ss_pred             cCCccccCCC------CCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccc
Q 030756           93 LGLEYNMSGL------TGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSL  161 (172)
Q Consensus        93 ~Gi~~~~~~~------~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~  161 (172)
                      .++++..+..      ..++..++++..++..++.++..+|++++|+++|.+|.||+|+++|.++++++|++.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~g~di~d~~~l~~~a~~~gl~~~~  150 (221)
T d1r4wa_          76 FQVPMSVPKDFFGEHVKKGTVNAMRFLTAVSMEQPEMLEKVSRELWMRIWSRDEDITESQNILSAAEKAGMATAQ  150 (221)
T ss_dssp             HTCCCCCCSSTTTHHHHHCSHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHH
T ss_pred             hhhhhccccccccccccccchhHHHHHHHHHHhccchHHHHHHHHHHHHhccCCcccchHHHHHHHHHhCccccc
Confidence            8888876532      24566666666665555555589999999999999999999999999999999998763

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=98.89  E-value=1.1e-08  Score=72.86  Aligned_cols=104  Identities=8%  Similarity=-0.089  Sum_probs=77.6

Q ss_pred             CcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHH
Q 030756           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVF   90 (172)
Q Consensus        11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a   90 (172)
                      ..+++|..|+|+.||+|+-....+.++++++.+  .+.+.++|+.+...      +..                      
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~------~~~----------------------   66 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPE--GAKFQKNHVSFMGG------NMG----------------------   66 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCT--TCEEEEEECSSSSG------GGH----------------------
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhccc--ccceeEEecccccc------ccH----------------------
Confidence            456788889999999999999999999988764  56777776654321      000                      


Q ss_pred             HhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccc
Q 030756           91 RGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLV  162 (172)
Q Consensus        91 ~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~  162 (172)
                                      ..+.++...+...+.  ...+...++..++..+.++++.+.|..++...|+|.+.+
T Consensus        67 ----------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gvd~~~~  120 (181)
T d1beda_          67 ----------------QAMSKAYATMIALEV--EDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKF  120 (181)
T ss_dssp             ----------------HHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSCCCCCSHHHHHHHHHTTTCCHHHH
T ss_pred             ----------------HHHHHHHHHHHHhcc--hhhHHHHHHHHHHHhccccchHHHHHHHHHHhcCCHHHH
Confidence                            011222333344555  788999999999999999999999999999999997644

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.00  E-value=3.1e-06  Score=59.31  Aligned_cols=51  Identities=14%  Similarity=0.137  Sum_probs=41.7

Q ss_pred             ccCCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCC
Q 030756            8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNP   58 (172)
Q Consensus         8 ~~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~   58 (172)
                      .++..+++|..|+|+.||+|+-.++.+.+++.++.+...+.+.++|+.+.+
T Consensus        20 G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (172)
T d1z6ma1          20 GESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEK   70 (172)
T ss_dssp             SCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCS
T ss_pred             cCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccc
Confidence            455678999999999999999999999999888766556777777775543

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=8.1e-06  Score=57.74  Aligned_cols=46  Identities=15%  Similarity=0.140  Sum_probs=38.6

Q ss_pred             ccCCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeC
Q 030756            8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLN   57 (172)
Q Consensus         8 ~~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~   57 (172)
                      .+...+++|.+|+|+.||||.-.+..+++++..    ..+.|.|+||.+.
T Consensus        32 G~~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~----~~v~v~~~~~~~~   77 (169)
T d1v58a1          32 GKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS----GKVQLRTLLVGVI   77 (169)
T ss_dssp             SCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT----TSEEEEEEECCCS
T ss_pred             CCCCCCEEEEEEECCCCcchHHHHHHHHHHHhc----cceeEEEEecccC
Confidence            455678999999999999999999999888763    4799999998653

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=2.4e-05  Score=55.32  Aligned_cols=104  Identities=13%  Similarity=-0.001  Sum_probs=61.9

Q ss_pred             ceeEEEEEecCCcchhhhHHHHHHHHHhcC-CCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHHHHH
Q 030756           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSK-DQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTEVFR   91 (172)
Q Consensus        13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~-~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~   91 (172)
                      .++|.-|||+.||+|.-.++.+..+..... ....+.+.++|+.+..         ....                    
T Consensus        19 ~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--------------------   69 (188)
T d1fvka_          19 APQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMG---------GDLG--------------------   69 (188)
T ss_dssp             CCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECSSSS---------HHHH--------------------
T ss_pred             CCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecCcCC---------ChhH--------------------
Confidence            456777889999999988776644333111 1225666666543211         0000                    


Q ss_pred             hcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccccc
Q 030756           92 GLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYFTQGKYIGDKCAYFSFDEFFFFFPSLVN  163 (172)
Q Consensus        92 ~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~~eg~disd~~vL~~ia~~~Gld~~~~~  163 (172)
                                     ..+..+...++..|.  ...+...++...+ +..+..+.+.+..++.+.|+|.+.++
T Consensus        70 ---------------~~~a~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~d~~~~~  123 (188)
T d1fvka_          70 ---------------KDLTQAWAVAMALGV--EDKVTVPLFEGVQ-KTQTIRSASDIRDVFINAGIKGEEYD  123 (188)
T ss_dssp             ---------------HHHHHHHHHHHHHTC--HHHHHHHHHHHHH-TSCCCCSHHHHHHHHHHTTCCHHHHH
T ss_pred             ---------------HHHHHHHHHHHHHhh--hhhHHHHHHHHhh-hhcccchHHHHHHHHHHccCCHHHHH
Confidence                           011223334445555  5556666666654 45578889999999999999886543

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=1.6e-05  Score=57.63  Aligned_cols=77  Identities=14%  Similarity=0.128  Sum_probs=52.3

Q ss_pred             cceeEEEEEecCCcchhhhHHHHH---HHHHhcCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCcHHHHHHHHHH
Q 030756           12 KLIRIDVSSDTVCPWCFVGKRNLD---KAIASSKDQYDFEIRWHPFFLNPSAPKEGVNKKDFYENKFGSQNQGIIARMTE   88 (172)
Q Consensus        12 ~~~~I~~~~D~~CPwcyl~~~~L~---~~~~~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   88 (172)
                      ..++|.-|||+.||+||-..+.|.   ++.+.+++  ++.+.+.|+.+...         +                   
T Consensus       113 ~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~--~v~~~~~~~~~~~~---------~-------------------  162 (195)
T d1un2a_         113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE--GVKMTKYHVNFMGG---------D-------------------  162 (195)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT--TCCEEEEECSSSSH---------H-------------------
T ss_pred             CCceEEEEEecCCccccccchhhhHHHHHHhhcCC--CcEEEEEecCcCCC---------c-------------------
Confidence            456788888999999998877664   33334443  56666665532210         0                   


Q ss_pred             HHHhcCCccccCCCCCChHHHHHHHHHHhhcCchHHHHHHHHHHHHHh
Q 030756           89 VFRGLGLEYNMSGLTGNTLDSHRLLYLAGQQGLDKQHNLAEELFLGYF  136 (172)
Q Consensus        89 ~a~~~Gi~~~~~~~~~~s~~A~r~~~~a~~~g~~~~~~~~~al~~a~~  136 (172)
                                      ++..+.++..+|+.+|.  .+++.++||+|..
T Consensus       163 ----------------~~~~~A~a~~aA~~~g~--~~~~h~alF~aIh  192 (195)
T d1un2a_         163 ----------------LGKDLTQAWAVAMALGV--EDKVTVPLFEGVQ  192 (195)
T ss_dssp             ----------------HHHHHHHHHHHHHHHTC--HHHHHHHHHHHHH
T ss_pred             ----------------chHHHHHHHHHHHHcCC--HHHHHHHHHHHHH
Confidence                            11234677788888888  8899999999976

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.48  E-value=7.2e-05  Score=51.61  Aligned_cols=45  Identities=18%  Similarity=0.299  Sum_probs=36.2

Q ss_pred             ccCCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeC
Q 030756            8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLN   57 (172)
Q Consensus         8 ~~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~   57 (172)
                      .+...+.+|.+|+|+-||||--.++.+.+++..     +..|.++++.+.
T Consensus        22 g~~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~-----~~~v~~~~~~~~   66 (150)
T d1t3ba1          22 PAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDL-----GITVRYLAFPRA   66 (150)
T ss_dssp             CCTTCSEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCSS
T ss_pred             CCCCCCEEEEEEECCCCHHHHHHhHHHHHHhcc-----CceEEEEEeccc
Confidence            455678899999999999999999999888752     567777776543

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=6.8e-05  Score=52.02  Aligned_cols=46  Identities=20%  Similarity=0.294  Sum_probs=35.8

Q ss_pred             ccCCcceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCC
Q 030756            8 SAGKKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNP   58 (172)
Q Consensus         8 ~~~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~   58 (172)
                      .+...+.+|.+|+||-||||--.++.+.++..     .++.+.|+.|.+.+
T Consensus        22 g~~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~-----~~~~~~~~~~p~~~   67 (156)
T d1eeja1          22 KAPQEKHVITVFTDITCGYCHKLHEQMADYNA-----LGITVRYLAFPRQG   67 (156)
T ss_dssp             CCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH-----TTEEEEEEECCTTC
T ss_pred             cCCCCCEEEEEEeCCCCHHHHHHHHHHHHhhc-----cCceEEEEeccccc
Confidence            34456889999999999999998888888765     36788888775443

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=91.47  E-value=0.056  Score=31.96  Aligned_cols=23  Identities=26%  Similarity=0.616  Sum_probs=19.5

Q ss_pred             eeEEEEEecCCcchhhhHHHHHH
Q 030756           14 IRIDVSSDTVCPWCFVGKRNLDK   36 (172)
Q Consensus        14 ~~I~~~~D~~CPwcyl~~~~L~~   36 (172)
                      |+|++|+=+.||||--+...|.+
T Consensus         1 Mki~iYs~~~C~~C~~ak~~L~~   23 (76)
T d1h75a_           1 MRITIYTRNDCVQCHATKRAMEN   23 (76)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCccHHHHHHHHHh
Confidence            46899999999999988777654

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=90.59  E-value=0.077  Score=31.04  Aligned_cols=23  Identities=26%  Similarity=0.590  Sum_probs=19.4

Q ss_pred             eeEEEEEecCCcchhhhHHHHHH
Q 030756           14 IRIDVSSDTVCPWCFVGKRNLDK   36 (172)
Q Consensus        14 ~~I~~~~D~~CPwcyl~~~~L~~   36 (172)
                      |+|++|+=+.||||--+...|.+
T Consensus         1 M~v~iYt~~~C~~C~~ak~~L~~   23 (74)
T d1r7ha_           1 MSITLYTKPACVQCTATKKALDR   23 (74)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCChhHHHHHHHHHH
Confidence            57999999999999987776653

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=90.00  E-value=0.18  Score=30.21  Aligned_cols=35  Identities=20%  Similarity=0.501  Sum_probs=26.4

Q ss_pred             eeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEE
Q 030756           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRW   51 (172)
Q Consensus        14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~   51 (172)
                      ++|.+|+=..||||.-+...|.+.-..+.   +++++-
T Consensus         1 Mkvviysk~~Cp~C~~aK~ll~~~~~~~~---~i~~~~   35 (85)
T d1egoa_           1 MQTVIFGRSGCPYCVRAKDLAEKLSNERD---DFQYQY   35 (85)
T ss_dssp             CEEEEECCTTSTHHHHHHHHHHHHHHHHS---SCEEEE
T ss_pred             CEEEEEeCCCCHhHHHHHHHHHHcCCCCC---CceEEE
Confidence            57889999999999999888887654442   455543

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.33  E-value=0.17  Score=30.21  Aligned_cols=31  Identities=26%  Similarity=0.563  Sum_probs=27.9

Q ss_pred             ceeEEEEEecCCcchhhhHHHHHHHHHhcCC
Q 030756           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (172)
Q Consensus        13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~   43 (172)
                      .++|++|+-+-||.|--..+.++++.++|++
T Consensus         2 ~v~v~~F~a~wC~~C~~~~p~~~~l~~~~~~   32 (85)
T d1nhoa_           2 VVNIEVFTSPTCPYCPMAIEVVDEAKKEFGD   32 (85)
T ss_dssp             CCCEEEESCSSSCCSTTHHHHHHHHHHHHCS
T ss_pred             EEEEEEEECCCCcchHHHHHHHhhhcccccc
Confidence            4789999999999999999999999988864

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=89.07  E-value=0.13  Score=29.97  Aligned_cols=22  Identities=27%  Similarity=0.617  Sum_probs=18.9

Q ss_pred             eEEEEEecCCcchhhhHHHHHH
Q 030756           15 RIDVSSDTVCPWCFVGKRNLDK   36 (172)
Q Consensus        15 ~I~~~~D~~CPwcyl~~~~L~~   36 (172)
                      +|++|+-+.||||--+...|.+
T Consensus         6 ~I~iYs~~~C~~C~~ak~lL~~   27 (74)
T d1nm3a1           6 SISIFTKPGCPFCAKAKQLLHD   27 (74)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHH
Confidence            4899999999999988877664

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.25  E-value=0.52  Score=27.66  Aligned_cols=33  Identities=21%  Similarity=0.523  Sum_probs=28.8

Q ss_pred             CcceeEEEEEecCCcchhhhHHHHHHHHHhcCC
Q 030756           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASSKD   43 (172)
Q Consensus        11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~   43 (172)
                      |++++|.+|+-.-||.|-...+.++++.+.++.
T Consensus         1 m~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~   33 (85)
T d1fo5a_           1 MSKVKIELFTSPMCPHCPAAKRVVEEVANEMPD   33 (85)
T ss_dssp             CCCEEEEEEECCCSSCCCTHHHHHHHHHHHCSS
T ss_pred             CCceEEEEEECCCCcChHhhhhhcccccccccc
Confidence            567899999999999999999999998887643

>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Yeast prion protein ure2p, nitrogen regulation fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.51  E-value=0.32  Score=29.58  Aligned_cols=38  Identities=16%  Similarity=0.042  Sum_probs=26.5

Q ss_pred             ceeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeeeeeCC
Q 030756           13 LIRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPFFLNP   58 (172)
Q Consensus        13 ~~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~~L~~   58 (172)
                      .-.|++|....||+|+-..-    ++++    .++..+++.+.+..
T Consensus         3 ~~~~tLY~~~~sp~~~kV~~----~L~e----~gi~ye~~~v~~~~   40 (92)
T d1k0da2           3 LEGYTLFSHRSAPNGFKVAI----VLSE----LGFHYNTIFLDFNL   40 (92)
T ss_dssp             SSSEEEEECTTCHHHHHHHH----HHHH----TTCCEEEEECCTTT
T ss_pred             CCceEEeeCCCCccHHHHHH----HHHH----cCCCCEEEEeeccC
Confidence            34589999999999996443    3332    36777777776543

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=85.55  E-value=0.26  Score=29.24  Aligned_cols=22  Identities=23%  Similarity=0.705  Sum_probs=18.3

Q ss_pred             eEEEEEecCCcchhhhHHHHHH
Q 030756           15 RIDVSSDTVCPWCFVGKRNLDK   36 (172)
Q Consensus        15 ~I~~~~D~~CPwcyl~~~~L~~   36 (172)
                      .|++|+=+.||||--+...|++
T Consensus         2 ~I~iys~~~Cp~C~~ak~~L~~   23 (82)
T d1fova_           2 NVEIYTKETCPYCHRAKALLSS   23 (82)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHH
T ss_pred             cEEEEeCCCCHhHHHHHHHHHH
Confidence            4899999999999987766654

>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=84.67  E-value=0.53  Score=29.68  Aligned_cols=33  Identities=15%  Similarity=0.305  Sum_probs=23.5

Q ss_pred             eeEEEEEecCCcchhhhHHHHHHHHHhcCCCCceEEEEeee
Q 030756           14 IRIDVSSDTVCPWCFVGKRNLDKAIASSKDQYDFEIRWHPF   54 (172)
Q Consensus        14 ~~I~~~~D~~CPwcyl~~~~L~~~~~~~~~~~~~~v~~~p~   54 (172)
                      ++|++|.-..||||.-....|..        .+++.+.+.+
T Consensus         1 m~i~LY~~~~sP~~~kvr~~L~~--------k~l~~~~~~v   33 (113)
T d1z9ha2           1 LQLTLYQYKTCPFCSKVRAFLDF--------HALPYQVVEV   33 (113)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHH--------TTCCEEEEEC
T ss_pred             CEEEEEcCCCChHHHHHHHHHHH--------cCCeeEEecc
Confidence            57999999999999965544432        2566666654

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.14  E-value=1.3  Score=26.69  Aligned_cols=31  Identities=10%  Similarity=0.048  Sum_probs=26.3

Q ss_pred             CcceeEEEEEecCCcchhhhHHHHHHHHHhc
Q 030756           11 KKLIRIDVSSDTVCPWCFVGKRNLDKAIASS   41 (172)
Q Consensus        11 ~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~~   41 (172)
                      ..++.|.+|+-+-||+|--..+.++++...+
T Consensus        14 ~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~   44 (96)
T d1hyua4          14 DGDFEFETYYSLSCHNCPDVVQALNLMAVLN   44 (96)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHhC
Confidence            3567899999999999999999999877654

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.11  E-value=1.1  Score=27.20  Aligned_cols=31  Identities=26%  Similarity=0.364  Sum_probs=25.0

Q ss_pred             CCcceeEEEEEecCCcchhhhHHHHHHHHHh
Q 030756           10 GKKLIRIDVSSDTVCPWCFVGKRNLDKAIAS   40 (172)
Q Consensus        10 ~~~~~~I~~~~D~~CPwcyl~~~~L~~~~~~   40 (172)
                      ...++.|.+|+.+-||+|--..+.+.++...
T Consensus        13 ~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~   43 (107)
T d1a8la2          13 IDQDVRILVFVTPTCPYCPLAVRMAHKFAIE   43 (107)
T ss_dssp             CCSCEEEEEEECSSCTTHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEEcCccccchhhChhHHhhhhh
Confidence            3466788888899999999988888887543