Citrus Sinensis ID: 030768

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MRKIRGFKIGKRLVRVTRWIIRKTRGGSGYQRLGAPDMSCECKSKPISKLISWGRRLTNGAKSLCLAKPASGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAGNGARTRKLTWKRNH
Secondary Structure (PSIPRED)
ccccccEEccccHHEEEEHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHEEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEcccccccEEEEEEEEHcccHHHHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
mrkirgfkigkrLVRVTRWIIRKtrggsgyqrlgapdmsceckskpisklISWGRRLTNGAKslclakpasgyvpmdqdpirekpvsvpkghlavyvgqkdgdfhrVLVPVIYFNHPLFGKLLRDAEEeygfnqqggitipcrfseFEQVQTRIAagngartrkltwkrnh
Flexible Loop (DISEMBL)
mrkirgfkigkrlvrvtrwiirktrggsgyqrlgapdmsceckSKPISKLISWGRRLTNGAKSLCLAKPASGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRiaagngartrkltwkrnh
Low Complexity Region (SEG)
MRKIRGFKIGKRLVRVTRWIIRKTRGGSGYQRLGAPDMSCECKSKPISKLISWGRRLTNGAKSLCLAKPASGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAGNGARTRKLTWKRNH
Disordered region (IsUnstruct)
****RGFKIGKRLVRVTRWIIRKTRGGSGYQRLGAPDMSCECKSKPISKLISWGRRLTNGAKSLCLAKPASGYV***********VSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAG**************
Disordered Region (DISOPRED)
****RGFKIGKRLVRVTRWIIRK*******************************************************************GHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQ********************
Disordered Region (DISEMBL)
MRKIRGFKIGKRLVRVTRWIIRKTRGGSGYQRLGAPDMSCECKSKPISKLISWGRRLTNGAKSLCLAKPASGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAGNGAR**********
Disordered Region (DISPRO)
**KIRGFKIGKRLVRVTRWIIRKTRGGS*************CKSKPISKLISWGRRLTNGAKSLCLA*****************PVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAA***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRKIRGFKIGKRLVRVTRWIIRKTRGGSGYQRLGAPDMSCECKSKPISKLISWGRRLTNGAKSLCLAKPASGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAGNGARTRKLTWKRNH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
P33080	92	Auxin-induced protein X10	no	no	0.397	0.739	0.5	4e-12
P33079	93	Auxin-induced protein 10A	no	no	0.397	0.731	0.486	6e-11
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.409	0.760	0.432	7e-11
P33082	82	Auxin-induced protein X15	no	no	0.362	0.756	0.484	3e-10
P33081	82	Auxin-induced protein 15A	no	no	0.385	0.804	0.457	4e-10
P33083	90	Auxin-induced protein 6B	no	no	0.385	0.733	0.471	4e-10

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 70.9 bits (172), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 84  KPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQ-QGGITIPC 142
           K V VPKG+L VYVG K     R L+PV Y N P F  LL  AEEE+G++   GG+TIPC
Sbjct: 21  KSVEVPKGYLVVYVGDK---MRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPC 77

Query: 143 RFSEFEQVQTRI 154
           +  EF  V + +
Sbjct: 78  KEDEFLTVTSHL 89

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 67.0 bits (162), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 4/72 (5%)

Query: 84  KPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQ-QGGITIPC 142
           K V VPKG+ AVYVG K     R  +PV Y N P F +LL  AEEE+G++   GG+TIPC
Sbjct: 22  KRVDVPKGYAAVYVGDK---MRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPC 78

Query: 143 RFSEFEQVQTRI 154
           +  EF  V   +
Sbjct: 79  KEEEFLNVTAHL 90

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 48/74 (64%), Gaps = 4/74 (5%)

Query: 84  KPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQ-QGGITIPC 142
           K +  PKG+LAVYVG+   +  R ++PV + N PLF  LL  AEEE+G++   GG+TIPC
Sbjct: 21  KVLDAPKGYLAVYVGE---NMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPC 77

Query: 143 RFSEFEQVQTRIAA 156
               F+ + + ++A
Sbjct: 78  SEDLFQHITSCLSA 91

Vigna radiata var. radiata (taxid: 3916)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 4/66 (6%)

Query: 86  VSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQ-QGGITIPCRF 144
           V  PKG+LAVYVG+K     R ++PV Y N P F  LL  AEEE+G++   GG+TIPC  
Sbjct: 15  VDAPKGYLAVYVGEK---MKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSE 71

Query: 145 SEFEQV 150
             F+++
Sbjct: 72  EVFQRI 77

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 4/70 (5%)

Query: 84  KPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQ-QGGITIPC 142
           K    PKG+LAVYVG+K     R ++PV Y N P F  LL  AEEE+G++   GG+TIPC
Sbjct: 13  KAADAPKGYLAVYVGEK---LKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPC 69

Query: 143 RFSEFEQVQT 152
               F+ + +
Sbjct: 70  SEDVFQCITS 79

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 4/70 (5%)

Query: 84  KPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQ-QGGITIPC 142
           K V V KG+LAVYVG+K     R ++PV Y N P F  LL  AEEE+G++   GG+TIPC
Sbjct: 21  KAVDVEKGYLAVYVGEK---MRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPC 77

Query: 143 RFSEFEQVQT 152
               F+ + +
Sbjct: 78  SEDVFQHITS 87

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
224127334	170	SAUR family protein [Populus trichocarpa	0.982	0.988	0.744	4e-67
255541222	168	Auxin-induced protein X10A, putative [Ri	0.976	0.994	0.713	2e-64
224063729	171	SAUR family protein [Populus trichocarpa	0.988	0.988	0.697	4e-58
449498805	169	PREDICTED: uncharacterized LOC101208334	0.947	0.958	0.588	3e-50
449459820	169	PREDICTED: uncharacterized protein LOC10	0.947	0.958	0.588	6e-50
225453979	172	PREDICTED: uncharacterized protein LOC10	0.947	0.941	0.594	1e-49
312283221	172	unnamed protein product [Thellungiella h	0.976	0.970	0.567	2e-47
356498236	162	PREDICTED: uncharacterized protein LOC10	0.923	0.975	0.563	2e-45
15232400	170	SAUR-like auxin-responsive protein [Arab	0.964	0.970	0.561	3e-45
388521103	162	unknown [Medicago truncatula]	0.894	0.944	0.579	2e-43

>gi|224127334|ref|XP_002320048.1| SAUR family protein [Populus trichocarpa] gi|222860821|gb|EEE98363.1| SAUR family protein [Populus trichocarpa]

 Score =  259 bits (661), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 128/172 (74%), Positives = 143/172 (83%), Gaps = 4/172 (2%)

Query: 1   MRKIRGFKIGKRLVRVTRWIIRKTR-GGSGYQRLGAPDMSCECKSKPISKLISWGRRLTN 59
           MRKIRGFKIGKRLVR++ WI R+TR    GY  LG  + +C  K K ISK+I+WGRRLT 
Sbjct: 1   MRKIRGFKIGKRLVRISTWIFRRTRIHPPGYNLLGQSESTCRSKPKSISKIINWGRRLTK 60

Query: 60  GAKSLCLAKPASGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLF 119
           GAKSLC AKP SGY+PM  + + +KPV+VPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLF
Sbjct: 61  GAKSLCGAKPGSGYIPMGHELVCDKPVTVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLF 120

Query: 120 GKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAGNGARTRKLTWKRNH 171
           G+LLR+AEEEYGFNQQGGITIPCRFSEFE VQTRI AG+G    K TWKRNH
Sbjct: 121 GELLREAEEEYGFNQQGGITIPCRFSEFESVQTRIKAGSGG---KPTWKRNH 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541222|ref|XP_002511675.1| Auxin-induced protein X10A, putative [Ricinus communis] gi|223548855|gb|EEF50344.1| Auxin-induced protein X10A, putative [Ricinus communis]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 122/171 (71%), Positives = 142/171 (83%), Gaps = 4/171 (2%)

Query: 1   MRKIRGFKIGKRLVRVTRWIIRKTRGGSGYQRLGAPDMSCECKSKPISKLISWGRRLTNG 60
           M K +GFKIGKRLVR++RWI R+TR    Y RL +   +C  + KP++KLI+WGRRLT G
Sbjct: 1   MMKFKGFKIGKRLVRISRWIFRRTRNNPRYDRLCSSGPTC--RLKPLTKLINWGRRLTKG 58

Query: 61  AKSLCLAKPASGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFG 120
           AKSLC AKP SGY  + ++PI EKPV+VPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFG
Sbjct: 59  AKSLCSAKPGSGYTHIGEEPIHEKPVTVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFG 118

Query: 121 KLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAGNGARTRKLTWKRNH 171
           +LLR+AE EYGFNQQGGITIPCR+SEFE+VQTRIAAG+G R   L  +RNH
Sbjct: 119 ELLREAEREYGFNQQGGITIPCRYSEFERVQTRIAAGSGVRA--LMRRRNH 167

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063729|ref|XP_002301272.1| SAUR family protein [Populus trichocarpa] gi|222842998|gb|EEE80545.1| SAUR family protein [Populus trichocarpa]

 Score =  229 bits (583), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 120/172 (69%), Positives = 142/172 (82%), Gaps = 3/172 (1%)

Query: 1   MRKIRGFKIGKRLVRVTRWIIRKTR-GGSGYQRLGAPDMSCECKSKPISKLISWGRRLTN 59
           MRK RGFKIGKR VR++ WI  +TR    G   +G  + +C  KSK +SK+I+WGRRLT 
Sbjct: 1   MRKNRGFKIGKRFVRISTWIFSRTRIHPPGCNSIGPSESTCSSKSKSLSKIINWGRRLTK 60

Query: 60  GAKSLCLAKPASGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLF 119
           GAKS+C AKP SGY+P+  +P+ +KPV VPKGHLAVYVGQKDG+FHRVLVP+IYFNHPLF
Sbjct: 61  GAKSICSAKPRSGYIPVGHEPVCDKPVPVPKGHLAVYVGQKDGEFHRVLVPLIYFNHPLF 120

Query: 120 GKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAGNGARTRKLTWKRNH 171
           G+LLR+AEEEYGFNQQGGITIPCRFSEFE+VQTRI +G+    RKLTWKRNH
Sbjct: 121 GELLREAEEEYGFNQQGGITIPCRFSEFERVQTRIKSGSCG--RKLTWKRNH 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449498805|ref|XP_004160639.1| PREDICTED: uncharacterized LOC101208334 [Cucumis sativus]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 100/170 (58%), Positives = 128/170 (75%), Gaps = 8/170 (4%)

Query: 1   MRKIRGFKIGKRLVRVTRWII-RKTRGGSGYQRLGAPDMSCECKSKPISKLISWGRRLTN 59
           MR+IRGFK+GK + R++ WI+ R+ R  SGY  L     S    +KPI+KL+ WGRRL +
Sbjct: 1   MRRIRGFKLGKHIRRISNWILHRRRRNRSGYSLL-----SSRRSTKPIAKLLRWGRRLRD 55

Query: 60  GAKSLCLAKPASGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLF 119
           GAKS+C ++    YVP+D+D   +K  +VPKGHLAVYVGQ DG+FHRVLVPVIYFNHPLF
Sbjct: 56  GAKSICSSRRRLSYVPLDRDLKEKKSAAVPKGHLAVYVGQNDGEFHRVLVPVIYFNHPLF 115

Query: 120 GKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAGNGARTRKLTWKR 169
           G+LLR+AEEEYGF  +GGITIPC ++EFE VQ+RI +G+    RK  WK+
Sbjct: 116 GELLREAEEEYGFEHEGGITIPCPYAEFENVQSRIKSGSSG--RKAPWKK 163

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459820|ref|XP_004147644.1| PREDICTED: uncharacterized protein LOC101208334 [Cucumis sativus]

 Score =  201 bits (512), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 100/170 (58%), Positives = 128/170 (75%), Gaps = 8/170 (4%)

Query: 1   MRKIRGFKIGKRLVRVTRWII-RKTRGGSGYQRLGAPDMSCECKSKPISKLISWGRRLTN 59
           MR+IRGFK+GK + R++ WI+ R+ R  SGY  L     S    +KPI+KL+ WGRRL +
Sbjct: 1   MRRIRGFKLGKHIRRISNWILHRRRRNRSGYSLL-----SSGRSTKPIAKLLRWGRRLRD 55

Query: 60  GAKSLCLAKPASGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLF 119
           GAKS+C ++    YVP+D+D   +K  +VPKGHLAVYVGQ DG+FHRVLVPVIYFNHPLF
Sbjct: 56  GAKSICSSRRRLSYVPLDRDLKEKKSAAVPKGHLAVYVGQNDGEFHRVLVPVIYFNHPLF 115

Query: 120 GKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAGNGARTRKLTWKR 169
           G+LLR+AEEEYGF  +GGITIPC ++EFE VQ+RI +G+    RK  WK+
Sbjct: 116 GELLREAEEEYGFEHEGGITIPCPYAEFENVQSRIKSGSSG--RKAPWKK 163

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453979|ref|XP_002280387.1| PREDICTED: uncharacterized protein LOC100260776 [Vitis vinifera]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 104/175 (59%), Positives = 126/175 (72%), Gaps = 13/175 (7%)

Query: 1   MRKIRGFKIGKRLVRVTRWIIRKTRGGSGYQRLGAPDMSCECKSKPISKLISWGRRLTNG 60
           MRKIRGFK+GKR+V+   W  R++R  SGY RLG        K+K IS+L +WG+RL   
Sbjct: 1   MRKIRGFKLGKRVVKFCGWFFRRSRNPSGYHRLGQSTG----KTKTISRLCNWGQRLKTK 56

Query: 61  AKSLCLAKPA----SGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNH 116
           AK +C   P     SGY+P+ ++       +VPKGHLAVYVGQKDGDF RVLVPVIYFNH
Sbjct: 57  AKRICSLNPGPACFSGYLPVGEE---MPAATVPKGHLAVYVGQKDGDFQRVLVPVIYFNH 113

Query: 117 PLFGKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAGNGARTRKLTWKRNH 171
           PLFG+LLR++EEEYGF   GGITIPCR SEFE VQTRIAA  G   RK+TW+R++
Sbjct: 114 PLFGELLRESEEEYGFQHPGGITIPCRISEFESVQTRIAACQGC--RKMTWRRHY 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283221|dbj|BAJ34476.1| unnamed protein product [Thellungiella halophila]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/171 (56%), Positives = 132/171 (77%), Gaps = 4/171 (2%)

Query: 1   MRKIRGFKIGKRLVRVTRWIIRKTR-GGSGYQRLGAPDMSCECKSKPISKLISWGRRLT- 58
           MR++RG KI + + R++RWI+RKTR   S + RL      C+ +++ I+KLISWGR LT 
Sbjct: 1   MRRLRGIKIRRPIQRISRWILRKTRIRRSRHIRLTPTRPVCKPRARAITKLISWGRSLTS 60

Query: 59  NGAKSLCLAKPASGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPL 118
           + A+ L   +  SGY+P+ Q+PIR+KP  VPKGH AVYVG++DGDFHRVLVP++YFNHPL
Sbjct: 61  HSARFLGSKRSNSGYIPIGQEPIRDKPDPVPKGHSAVYVGKQDGDFHRVLVPIVYFNHPL 120

Query: 119 FGKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAGNGARTRKLTWKR 169
           FG+LLR+AEEE+GF Q+GGITIPC +S+F++VQTRI +G+G    K +W R
Sbjct: 121 FGELLREAEEEFGFCQEGGITIPCPYSDFKRVQTRIESGSGF--GKFSWSR 169

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498236|ref|XP_003517959.1| PREDICTED: uncharacterized protein LOC100783436 [Glycine max]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/172 (56%), Positives = 122/172 (70%), Gaps = 14/172 (8%)

Query: 1   MRKIRGFKIGKRLVRVTRWIIRK--TRGGSGYQRLGAPDMSCECKSKPISKLISWGRRLT 58
           M K RGF + +RL+RV++WI RK  TR    Y  LG      +    P+ KL++WGR+LT
Sbjct: 1   MSKNRGFNLRRRLIRVSKWIFRKIRTRAPREYHCLG------DSPPSPMVKLLTWGRKLT 54

Query: 59  NGAKSLCLAKPASGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPL 118
            GAKS       SGY  +  DP      SVPKGHLAVYVGQKDG+ HRVLVPVIYFNHPL
Sbjct: 55  AGAKSRLKVASGSGYAQLGTDP----DPSVPKGHLAVYVGQKDGELHRVLVPVIYFNHPL 110

Query: 119 FGKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAGN--GARTRKLTWK 168
           FG+LL+ AEEE+GF+ +GGITIPCRF+EFE+V+TRIA+G+  G R ++L W+
Sbjct: 111 FGELLKQAEEEFGFHHEGGITIPCRFTEFERVKTRIASGSRRGTRPKRLAWR 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232400|ref|NP_191628.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana] gi|14190479|gb|AAK55720.1|AF380639_1 AT3g60690/T4C21_100 [Arabidopsis thaliana] gi|7329679|emb|CAB82673.1| putative protein [Arabidopsis thaliana] gi|15809736|gb|AAL06796.1| AT3g60690/T4C21_100 [Arabidopsis thaliana] gi|332646576|gb|AEE80097.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 131/171 (76%), Gaps = 6/171 (3%)

Query: 1   MRKIRGFKIGKRLVRVTRWIIRKTR-GGSGYQRLGAPDMSCECKSKPISKLISWGRRLTN 59
           MRK+RG KI + + +++RWI+R+ +   S Y RL +P+    CK + I+KLISWGR LT+
Sbjct: 1   MRKLRGIKIRRPIKQISRWILRRIKIRRSRYTRL-SPNRPV-CKPRAITKLISWGRSLTS 58

Query: 60  GAKSLCLAKPA-SGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPL 118
            +     +K + SGY+P+ Q+PIREKP  VPKGH AVY+G+KDGDF RVLVP++YFNHPL
Sbjct: 59  HSARFIGSKCSNSGYIPIGQEPIREKPDPVPKGHSAVYIGKKDGDFQRVLVPIVYFNHPL 118

Query: 119 FGKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAGNGARTRKLTWKR 169
           FG+LLR+AEEE+GF+Q+GGITIPC +S+F++VQTRI +G+G    K  W R
Sbjct: 119 FGELLREAEEEFGFSQEGGITIPCPYSDFKRVQTRIESGSGF--CKFPWSR 167

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521103|gb|AFK48613.1| unknown [Medicago truncatula]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/169 (57%), Positives = 130/169 (76%), Gaps = 16/169 (9%)

Query: 7   FKIGKRLVRVTRWIIRKTRGGSGYQRLGA-PDMSCECKSKPISKLISWGRRLTNGAKSLC 65
           FK+GK+++RV++WI R TR    Y+RLGA P+     K+   +KL+SWGR++T  A+SLC
Sbjct: 3   FKLGKKVIRVSKWIFR-TR--LRYRRLGASPE-----KNHLTTKLLSWGRKITTKARSLC 54

Query: 66  LAKPASG---YVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKL 122
            +K  SG   Y+P+  DP+ +    VPKGHLAVYVGQKDG+F RVLVPV+YFNHPLFG+L
Sbjct: 55  -SKAGSGKFGYLPVGSDPVEQSGSPVPKGHLAVYVGQKDGEFRRVLVPVVYFNHPLFGEL 113

Query: 123 LRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAGNGARTRKLTWKRNH 171
           L++AE+EYGF  QGGITIPCR +EFE+V+TRIA+G+   TR+LT +R H
Sbjct: 114 LKEAEKEYGFCHQGGITIPCRVTEFERVKTRIASGSD--TRRLT-RRGH 159

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2101771	170	AT3G60690 [Arabidopsis thalian	0.964	0.970	0.561	2.6e-47
TAIR|locus:2050832	162	SAUR36 "AT2G45210" [Arabidopsi	0.923	0.975	0.532	1.5e-42
TAIR|locus:2127555	160	AT4G22620 "AT4G22620" [Arabido	0.912	0.975	0.476	2.9e-32
TAIR|locus:2139124	157	AT4G12410 "AT4G12410" [Arabido	0.883	0.961	0.447	6.9e-31
TAIR|locus:2079552	136	AT3G61900 "AT3G61900" [Arabido	0.391	0.492	0.611	5.3e-17
TAIR|locus:2062759	121	AT2G46690 "AT2G46690" [Arabido	0.415	0.586	0.563	6.7e-17
TAIR|locus:2134598	122	AT4G00880 "AT4G00880" [Arabido	0.409	0.573	0.591	8.6e-17
TAIR|locus:2047007	98	AT2G21210 "AT2G21210" [Arabido	0.421	0.734	0.5	3.8e-14
TAIR|locus:2168611	142	AT5G53590 "AT5G53590" [Arabido	0.374	0.450	0.515	3.8e-14
TAIR|locus:2116885	94	AT4G34800 "AT4G34800" [Arabido	0.350	0.638	0.573	1.6e-13

TAIR|locus:2101771 AT3G60690 [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 96/171 (56%), Positives = 131/171 (76%)

Query:     1 MRKIRGFKIGKRLVRVTRWIIRKTR-GGSGYQRLGAPDMSCECKSKPISKLISWGRRLTN 59
             MRK+RG KI + + +++RWI+R+ +   S Y RL +P+    CK + I+KLISWGR LT+
Sbjct:     1 MRKLRGIKIRRPIKQISRWILRRIKIRRSRYTRL-SPNRPV-CKPRAITKLISWGRSLTS 58

Query:    60 GAKSLCLAKPA-SGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPL 118
              +     +K + SGY+P+ Q+PIREKP  VPKGH AVY+G+KDGDF RVLVP++YFNHPL
Sbjct:    59 HSARFIGSKCSNSGYIPIGQEPIREKPDPVPKGHSAVYIGKKDGDFQRVLVPIVYFNHPL 118

Query:   119 FGKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAGNGARTRKLTWKR 169
             FG+LLR+AEEE+GF+Q+GGITIPC +S+F++VQTRI +G+G    K  W R
Sbjct:   119 FGELLREAEEEFGFSQEGGITIPCPYSDFKRVQTRIESGSGFC--KFPWSR 167

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2050832 SAUR36 "AT2G45210" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 91/171 (53%), Positives = 122/171 (71%)

Query:     1 MRKIRGFKIGKRLVRVTRWIIRKTR-GGSGYQRLGAPDMSCECKSKPISKLISWGRRLTN 59
             MRKI GF+IG+R   V+RWI RKTR   SGY R+ +   +C    +P++KL SWG+RL  
Sbjct:     1 MRKIIGFRIGRR---VSRWIFRKTRIQRSGYNRIHSTQQACMLM-RPLAKLKSWGQRLKQ 56

Query:    60 GAKSLCLAKPASGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLF 119
               +     +  S Y+P+D     +K   VP+GHLA+YVGQKDGD HRVLVP++YFNHPLF
Sbjct:    57 SFRRRSTRR--SAYIPVDH----KKADPVPRGHLAIYVGQKDGDCHRVLVPIVYFNHPLF 110

Query:   120 GKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAGNGARTRKLTWKRN 170
             G+LLR+AE+EYGF  +GGITIPC +S+FE+V+TRIA+G+ +R     W R+
Sbjct:   111 GELLREAEKEYGFCHEGGITIPCLYSDFERVKTRIASGSSSRV--FPWGRH 159

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:1900057 "positive regulation of leaf senescence" evidence=IMP

TAIR|locus:2127555 AT4G22620 "AT4G22620" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 81/170 (47%), Positives = 107/170 (62%)

Query:     1 MRKIRGFKIGKRLVRVTRWIIRKTRGGSGYQRLGAPDMSCECKSKPISKLISWGRR-LTN 59
             M+++RGFKIG R V++ +WIIR  R  +G ++     ++      P++K+ S  RR L  
Sbjct:     1 MKRLRGFKIGHRFVKIFKWIIRSRRNQTGKRQCLTGILN------PVTKIYSLARRCLRR 54

Query:    60 GAKSLCLA-KPASGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPL 118
             GA  LC   KP  G   +  +P   K  +VP+GHL V+VG+   D  RV+VPVIYFNHPL
Sbjct:    55 GANRLCGGMKP--GQTRLGNEP---KTPTVPRGHLVVHVGESGEDTRRVVVPVIYFNHPL 109

Query:   119 FGKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAGNGARTRKLTWK 168
             FG+LL  AE  YGF Q G I IPCR S+FE+VQ RIAA +  R RK T+K
Sbjct:   110 FGELLEQAERVYGFEQPGRIMIPCRVSDFEKVQMRIAAWDHCR-RKSTFK 158

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2139124 AT4G12410 "AT4G12410" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 77/172 (44%), Positives = 105/172 (61%)

Query:     1 MRKIRGFKIGKRLVRVTRWIIRKTRGGSGYQRLGAPDMSCECK-SKPISKLISWGRRLTN 59
             M+++RGFKIG R V++ +WI               P   C  + + P++ + S  R L+ 
Sbjct:     1 MKRVRGFKIGHRFVKIFKWI---------------PRNRCPTRITNPVTGIRSLARCLSR 45

Query:    60 GAKSLC---LAKPASGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNH 116
             GAK LC      P    + + +DP +   V VP+GHL V+VG+ D D  RV+VPVIYFNH
Sbjct:    46 GAKRLCGGSKKNPGQNQIRLGKDPKKSNRV-VPRGHLVVHVGESDDDTRRVVVPVIYFNH 104

Query:   117 PLFGKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAGNGARTRKLTWK 168
             PLFG+LL  AE  +GF+Q G ITIPCR S+FE+VQ RIAA +  R RK ++K
Sbjct:   105 PLFGELLEQAERVHGFDQPGRITIPCRVSDFEKVQLRIAAWDHCR-RKNSYK 155

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2079552 AT3G61900 "AT3G61900" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 41/67 (61%), Positives = 48/67 (71%)

Query:    88 VPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQQGGITIPCRFSEF 147
             VPKG LA+ VG K+ +  R +VPV YFNHPLF +LLR+AEEEYGF Q+G ITIPC    F
Sbjct:    30 VPKGCLAIKVGSKEEEKQRFVVPVFYFNHPLFMQLLREAEEEYGFEQKGTITIPCHVEVF 89

Query:   148 EQVQTRI 154
               VQ  I
Sbjct:    90 RYVQDMI 96

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2062759 AT2G46690 "AT2G46690" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 40/71 (56%), Positives = 51/71 (71%)

Query:    84 KPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQQGGITIPCR 143
             K   VPKG LA+ VG +  +  R +VPV+YFNHPLF +LL++AE+EYGF+Q+G ITIPC 
Sbjct:    20 KVKDVPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGTITIPCH 79

Query:   144 FSEFEQVQTRI 154
               EF  VQ  I
Sbjct:    80 VEEFRYVQALI 90

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0006816 "calcium ion transport" evidence=RCA

TAIR|locus:2134598 AT4G00880 "AT4G00880" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 42/71 (59%), Positives = 52/71 (73%)

Query:    88 VPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQQGGITIPCRFSEF 147
             VPKG LAV VGQ + +  R ++PV+YFNHPLFG+LL++AEEE+GF Q+G ITIPC   EF
Sbjct:    28 VPKGCLAVKVGQGE-EQERFVIPVMYFNHPLFGQLLKEAEEEFGFAQKGTITIPCHVEEF 86

Query:   148 EQVQTRIAAGN 158
               VQ  I   N
Sbjct:    87 RYVQGLIDREN 97

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2047007 AT2G21210 "AT2G21210" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 37/74 (50%), Positives = 50/74 (67%)

Query:    86 VSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQ-QGGITIPCRF 144
             V++PKGHLAVYVG+      R +VPV Y +HP F KLLR AEEE+GF+   GG+TIPC  
Sbjct:    26 VAIPKGHLAVYVGEMMQK-RRFVVPVTYLSHPCFQKLLRKAEEEFGFDHPMGGLTIPCTE 84

Query:   145 SEFEQVQTRIAAGN 158
               F  + +R++  +
Sbjct:    85 QIFIDLASRLSTSS 98

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

TAIR|locus:2168611 AT5G53590 "AT5G53590" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 34/66 (51%), Positives = 47/66 (71%)

Query:    88 VPKGHLAVYVGQKDGD--FHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQQGGITIPCRFS 145
             VPKG +A+ VG +D +   HR +VP+++ +HPLF  LL++AE+EYGF   G ITIPC   
Sbjct:    46 VPKGCVAIMVGHEDDEEGLHRFVVPLVFLSHPLFLDLLKEAEKEYGFKHDGPITIPCGVD 105

Query:   146 EFEQVQ 151
             EF+ VQ
Sbjct:   106 EFKHVQ 111

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116885 AT4G34800 "AT4G34800" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 35/61 (57%), Positives = 42/61 (68%)

Query:    88 VPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQQ-GGITIPCRFSE 146
             VPKGH+AVYVG++     R +VP+ Y NHP F  LL  AEEE+GFN   GG+TIPCR   
Sbjct:    21 VPKGHVAVYVGEEMESKKRFVVPISYLNHPSFQGLLSRAEEEFGFNHPIGGLTIPCREET 80

Query:   147 F 147
             F
Sbjct:    81 F 81

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	3e-32
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	3e-17
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	4e-16
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	8e-16

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  110 bits (278), Expect = 3e-32
 Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 53  WGRRLTNGAKSLCLAKPASGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVI 112
              +  + AK   L+  +           +     VPKGH AVYVG++     R +VP+ 
Sbjct: 3   SRLKKASSAKKWILSAASGR---SRGSSSKSSSADVPKGHFAVYVGEE---TRRFVVPIS 56

Query: 113 YFNHPLFGKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRI 154
           Y NHPLF +LL  AEEE+GF+Q GG+TIPC    FE +   +
Sbjct: 57  YLNHPLFQELLDRAEEEFGFDQDGGLTIPCDVVVFEHLLWML 98

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 72.5 bits (178), Expect = 3e-17
 Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 3/58 (5%)

Query: 85  PVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQQGGITIPC 142
           P+ VPKGH  VYVG+      R +VP+ +  HP F  LL+ AEEE+GF+   G+TIPC
Sbjct: 37  PLDVPKGHFPVYVGENRS---RYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPC 91

Length = 104

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 69.8 bits (170), Expect = 4e-16
 Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 2/62 (3%)

Query: 88  VPKGHLAVYVGQK-DGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQ-QGGITIPCRFS 145
           VPKGH+AVYVG++ + +  R +VP+ + NHP F + L  AEEE+GFN   GG+TIPCR  
Sbjct: 35  VPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREE 94

Query: 146 EF 147
            F
Sbjct: 95  VF 96

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 69.0 bits (168), Expect = 8e-16
 Identities = 34/61 (55%), Positives = 43/61 (70%), Gaps = 2/61 (3%)

Query: 88  VPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQQ-GGITIPCRFSE 146
           VPKGH+AVYVG++  +  R +VP+ Y NHPLF + L  AEEE GF+   GG+TIPCR   
Sbjct: 39  VPKGHVAVYVGEQ-MEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREES 97

Query: 147 F 147
           F
Sbjct: 98  F 98

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	99.97
PLN03219	108	uncharacterized protein; Provisional	99.97
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	87.43
PRK02899	197	adaptor protein; Provisional	82.72

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=1.6e-34  Score=217.24  Aligned_cols=95  Identities=41%  Similarity=0.723  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHhhHhhhccCCCCCCCccCCCCCCCcCCCCCCCCeEEEEEcccCCcceEEEEEeeccCChhHHHHHHHHHH
Q 030768           49 KLISWGRRLTNGAKSLCLAKPASGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEE  128 (171)
Q Consensus        49 KL~~~~rKwq~~A~~~rk~~s~~~~~r~~~~~~~s~~~~vpkG~~aVYVG~~~~d~rRFvVP~~yLnhPlF~eLL~~aeE  128 (171)
                      |.++.++||++.++..++..+   .    .+  .++..++|+||||||||+   +++||+||++|||||+|++||++|||
T Consensus         6 k~~~~~~k~~~~~~~~~~~~~---~----~~--~~~~~~vp~G~~~VyVG~---~~~Rfvvp~~~L~hp~f~~LL~~aee   73 (100)
T PF02519_consen    6 KSLASAKKWQSRARSKSSSSS---S----SR--SSSESDVPKGHFAVYVGE---ERRRFVVPVSYLNHPLFQELLEQAEE   73 (100)
T ss_pred             HHHHHHHhhhhhhhhcccccc---c----cc--ccccCCCCCCeEEEEeCc---cceEEEechHHcCchhHHHHHHHHhh
Confidence            445555788777655544322   0    00  112367999999999997   79999999999999999999999999


Q ss_pred             hcCccCCCceEecCcHHHHHHHHHHHH
Q 030768          129 EYGFNQQGGITIPCRFSEFEQVQTRIA  155 (171)
Q Consensus       129 EfGf~~~G~LtIPCd~~~Fe~vl~~i~  155 (171)
                      ||||+++|+|+||||+++||+++|+|+
T Consensus        74 EfG~~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   74 EFGFDQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             hcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence            999999999999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=3.3e-34  Score=217.69  Aligned_cols=92  Identities=41%  Similarity=0.767  Sum_probs=79.3

Q ss_pred             hhHHHHHHHHHHhhHhhhccCCCCCCCccCCCCCCCcCCCCCCCCeEEEEEcccCCcceEEEEEeeccCChhHHHHHHHH
Q 030768           47 ISKLISWGRRLTNGAKSLCLAKPASGYVPMDQDPIREKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDA  126 (171)
Q Consensus        47 l~KL~~~~rKwq~~A~~~rk~~s~~~~~r~~~~~~~s~~~~vpkG~~aVYVG~~~~d~rRFvVP~~yLnhPlF~eLL~~a  126 (171)
                      +..|+++.++|.++++..       ++   +++.   .+.+||+||||||||+   +++||+||++|||||+|++||++|
T Consensus        12 ~~~~kq~l~r~~s~~~~~-------~~---~~~~---~~~~vpkG~~aVyVG~---~~~RfvVp~~~L~hP~F~~LL~~a   75 (104)
T PLN03090         12 TAMLKQILKRCSSLGKKQ-------GY---DEDG---LPLDVPKGHFPVYVGE---NRSRYIVPISFLTHPEFQSLLQQA   75 (104)
T ss_pred             HHHHHHHHHHHHHhcccC-------Cc---cccc---CCCCCCCCcEEEEECC---CCEEEEEEHHHcCCHHHHHHHHHH
Confidence            567889999998774421       11   1111   4678999999999997   689999999999999999999999


Q ss_pred             HHhcCccCCCceEecCcHHHHHHHHHHH
Q 030768          127 EEEYGFNQQGGITIPCRFSEFEQVQTRI  154 (171)
Q Consensus       127 eEEfGf~~~G~LtIPCd~~~Fe~vl~~i  154 (171)
                      ||||||+|+|+|+||||+++||+++|+|
T Consensus        76 eeEfGf~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         76 EEEFGFDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             HHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence            9999999999999999999999999998

>PLN03220 uncharacterized protein; Provisional

Probab=99.97  E-value=2e-31  Score=202.59  Aligned_cols=69  Identities=48%  Similarity=0.877  Sum_probs=63.2

Q ss_pred             CCCCCCCCeEEEEEcccC-CcceEEEEEeeccCChhHHHHHHHHHHhcCccC-CCceEecCcHHHHHHHHH
Q 030768           84 KPVSVPKGHLAVYVGQKD-GDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQ-QGGITIPCRFSEFEQVQT  152 (171)
Q Consensus        84 ~~~~vpkG~~aVYVG~~~-~d~rRFvVP~~yLnhPlF~eLL~~aeEEfGf~~-~G~LtIPCd~~~Fe~vl~  152 (171)
                      .+++|||||||||||+++ .+++||+||++|||||+|++||++|||||||+| +|+|+||||++.|++++.
T Consensus        31 ~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~  101 (105)
T PLN03220         31 SSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIA  101 (105)
T ss_pred             ccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHH
Confidence            456899999999999732 358999999999999999999999999999998 599999999999999985

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=6.1e-31  Score=200.76  Aligned_cols=71  Identities=49%  Similarity=0.883  Sum_probs=64.7

Q ss_pred             CcCCCCCCCCeEEEEEcccCCcceEEEEEeeccCChhHHHHHHHHHHhcCccC-CCceEecCcHHHHHHHHHH
Q 030768           82 REKPVSVPKGHLAVYVGQKDGDFHRVLVPVIYFNHPLFGKLLRDAEEEYGFNQ-QGGITIPCRFSEFEQVQTR  153 (171)
Q Consensus        82 ~s~~~~vpkG~~aVYVG~~~~d~rRFvVP~~yLnhPlF~eLL~~aeEEfGf~~-~G~LtIPCd~~~Fe~vl~~  153 (171)
                      ++++.+|||||||||||+. ++++||+||++|||||+|++||++|||||||+| +|+|+||||++.|++++..
T Consensus        33 ~~~~~~vpkGh~aVYVG~~-~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~  104 (108)
T PLN03219         33 TTTSGLVPKGHVAVYVGEQ-MEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITS  104 (108)
T ss_pred             CCCCCCCCCCeEEEEECCC-CCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence            3356789999999999973 368999999999999999999999999999997 5999999999999999875

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=87.43  E-value=1.1  Score=31.92  Aligned_cols=54  Identities=13%  Similarity=0.074  Sum_probs=42.4

Q ss_pred             ceEEEEEeeccC-C--hhHHHHHHHHHHhcCccCCCceEecCcHHHHHHHHHHHHcC
Q 030768          104 FHRVLVPVIYFN-H--PLFGKLLRDAEEEYGFNQQGGITIPCRFSEFEQVQTRIAAG  157 (171)
Q Consensus       104 ~rRFvVP~~yLn-h--PlF~eLL~~aeEEfGf~~~G~LtIPCd~~~Fe~vl~~i~~~  157 (171)
                      .+.|.++.+.|. +  ..|..|+........-+.+|.+-|-++...|++|+.-+..+
T Consensus         7 G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    7 GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            389999999888 4  48999988653222234569999999999999999999985

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=82.72  E-value=0.97  Score=37.70  Aligned_cols=25  Identities=36%  Similarity=0.828  Sum_probs=21.6

Q ss_pred             ChhHHHHHHHHHHhcCccCCCceEe
Q 030768          116 HPLFGKLLRDAEEEYGFNQQGGITI  140 (171)
Q Consensus       116 hPlF~eLL~~aeEEfGf~~~G~LtI  140 (171)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            3577888999999999999999875

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00