Citrus Sinensis ID: 030771

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVCVFNANYCLPIMLLIITFAADFTWLCIILTMQVMR
cccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHccccccEEEEEEEEEcccEEEEcccEEEEEEEccHHHHHHHHHHccEEEEHHHHHHHccccccEEEEEccccccHHHHHHHHHcccHHHHHHHHHHHHcc
cccEEHccccccEcEccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHccccccEEEEEEEEccccEEEEccccEEEEEHHcHHHHHHHHHcccEEEEHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
mgidlvaggkskkskrtapksddIYLKLLVKLYRFLVRRTDSNFNKVILKRLFmskvnkpplslSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKaggecltfdqlalraplgqntvcvfnanyclPIMLLIITFAADFTWLCIILTMQVMR
mgidlvaggkskkskrtapksddiylKLLVKLYRFlvrrtdsnfnkvilkrlfmskvnkpplsLSRLINFMKGKEDKIAVVVGTvtddirayevpalkvtalRFTETARARIEKAGGECLTFDQLALRAPLGQNTVCVFNANYCLPIMLLIITFAADFTWLCIILTMQVMR
MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVCVFNANYCLPIMLLIITFAADFTWLCIILTMQVMR
**********************DIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVCVFNANYCLPIMLLIITFAADFTWLCIILTMQ***
MGID*******************IYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVCVFNANYCLPIMLLIITFAADFTWLCIILTMQVM*
*******************KSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVCVFNANYCLPIMLLIITFAADFTWLCIILTMQVMR
*GI******KSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVCVFNANYCLPIMLLIITFAADFTWLCIILTMQVMR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiii
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MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVCVFNANYCLPIMLLIITFAADFTWLCIILTMQVMR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query171 2.2.26 [Sep-21-2011]
Q940B0187 60S ribosomal protein L18 yes no 0.795 0.727 0.860 1e-64
P42791187 60S ribosomal protein L18 yes no 0.795 0.727 0.860 3e-64
O65729183 60S ribosomal protein L18 N/A no 0.748 0.699 0.843 1e-57
O22254188 Putative 60S ribosomal pr no no 0.795 0.723 0.773 2e-54
P12001188 60S ribosomal protein L18 yes no 0.789 0.718 0.644 8e-44
Q90YV0188 60S ribosomal protein L18 N/A no 0.789 0.718 0.652 9e-44
P02412188 60S ribosomal protein L18 N/A no 0.801 0.728 0.621 1e-43
Q4R5H8188 60S ribosomal protein L18 N/A no 0.789 0.718 0.644 5e-43
Q07020188 60S ribosomal protein L18 yes no 0.789 0.718 0.644 5e-43
D0VWQ3188 Ribosomal protein L18 OS= yes no 0.789 0.718 0.644 5e-43
>sp|Q940B0|RL183_ARATH 60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1 Back     alignment and function desciption
 Score =  245 bits (625), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 117/136 (86%), Positives = 130/136 (95%)

Query: 1   MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKP 60
           MGIDL+AGGKSKK+KRTAPKSDD+YLKLLVKLYRFLVRR++SNFN VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECL 120
           PLSLSRL+ FM GK+DKIAV+VGT+TDD+R +E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTV 136
           TFDQLALRAPLGQNTV
Sbjct: 121 TFDQLALRAPLGQNTV 136

Arabidopsis thaliana (taxid: 3702)
>sp|P42791|RL182_ARATH 60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2 Back     alignment and function description
>sp|O65729|RL18_CICAR 60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1 Back     alignment and function description
>sp|O22254|RL181_ARATH Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3 Back     alignment and function description
>sp|P12001|RL18_RAT 60S ribosomal protein L18 OS=Rattus norvegicus GN=Rpl18 PE=2 SV=2 Back     alignment and function description
>sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18 OS=Ictalurus punctatus GN=rpl18 PE=2 SV=3 Back     alignment and function description
>sp|P02412|RL18B_XENLA 60S ribosomal protein L18-B OS=Xenopus laevis GN=rpl18-b PE=2 SV=4 Back     alignment and function description
>sp|Q4R5H8|RL18_MACFA 60S ribosomal protein L18 OS=Macaca fascicularis GN=RPL18 PE=2 SV=1 Back     alignment and function description
>sp|Q07020|RL18_HUMAN 60S ribosomal protein L18 OS=Homo sapiens GN=RPL18 PE=1 SV=2 Back     alignment and function description
>sp|D0VWQ3|RL18_CANFA Ribosomal protein L18 OS=Canis familiaris GN=RPL18 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query171
224064456187 predicted protein [Populus trichocarpa] 0.795 0.727 0.933 2e-66
449454059187 PREDICTED: 60S ribosomal protein L18-3-l 0.795 0.727 0.919 8e-66
351734388187 uncharacterized protein LOC100306301 [Gl 0.795 0.727 0.926 9e-66
147839223187 hypothetical protein VITISV_022459 [Viti 0.795 0.727 0.926 1e-65
449435988 389 PREDICTED: uncharacterized protein LOC10 0.795 0.349 0.926 1e-65
296089720249 unnamed protein product [Vitis vinifera] 0.795 0.546 0.926 2e-65
351725505187 uncharacterized protein LOC100499789 [Gl 0.795 0.727 0.926 2e-65
359487647 429 PREDICTED: uncharacterized protein LOC10 0.795 0.317 0.926 3e-65
356572966187 PREDICTED: 60S ribosomal protein L18-3-l 0.795 0.727 0.911 4e-65
388491902188 unknown [Medicago truncatula] 0.795 0.723 0.911 6e-65
>gi|224064456|ref|XP_002301485.1| predicted protein [Populus trichocarpa] gi|222843211|gb|EEE80758.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 127/136 (93%), Positives = 130/136 (95%)

Query: 1   MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKP 60
           MGIDL AGGKSKK+KRTAPKSDDIYLKLLVKLYRFLVRRT S FN VILKRLFMSK+NKP
Sbjct: 1   MGIDLKAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKINKP 60

Query: 61  PLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECL 120
           PLSLSRLI FMKGKEDKIAVVVGT+TDDIR YEVPALKVTALRFTETARARIEKAGGECL
Sbjct: 61  PLSLSRLITFMKGKEDKIAVVVGTITDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALRAPLGQNTV 136
           TFDQLALRAPLGQNTV
Sbjct: 121 TFDQLALRAPLGQNTV 136

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449454059|ref|XP_004144773.1| PREDICTED: 60S ribosomal protein L18-3-like [Cucumis sativus] gi|449490874|ref|XP_004158733.1| PREDICTED: 60S ribosomal protein L18-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|351734388|ref|NP_001236701.1| uncharacterized protein LOC100306301 [Glycine max] gi|255628147|gb|ACU14418.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|147839223|emb|CAN65685.1| hypothetical protein VITISV_022459 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449435988|ref|XP_004135776.1| PREDICTED: uncharacterized protein LOC101207642 [Cucumis sativus] gi|449524956|ref|XP_004169487.1| PREDICTED: uncharacterized protein LOC101228164 [Cucumis sativus] Back     alignment and taxonomy information
>gi|296089720|emb|CBI39539.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|351725505|ref|NP_001236071.1| uncharacterized protein LOC100499789 [Glycine max] gi|255626631|gb|ACU13660.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|359487647|ref|XP_002283392.2| PREDICTED: uncharacterized protein LOC100259659 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356572966|ref|XP_003554636.1| PREDICTED: 60S ribosomal protein L18-3-like [Glycine max] Back     alignment and taxonomy information
>gi|388491902|gb|AFK34017.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query171
TAIR|locus:2143330187 AT5G27850 [Arabidopsis thalian 0.795 0.727 0.860 5.7e-59
TAIR|locus:2078077187 RPL18 "ribosomal protein L18" 0.795 0.727 0.860 1.9e-58
MGI|MGI:98003188 Rpl18 "ribosomal protein L18" 0.789 0.718 0.652 4.6e-41
RGD|621182188 Rpl18 "ribosomal protein L18" 0.789 0.718 0.644 5.9e-41
UNIPROTKB|G3V203164 RPL18 "60S ribosomal protein L 0.789 0.823 0.644 1.6e-40
UNIPROTKB|Q07020188 RPL18 "60S ribosomal protein L 0.789 0.718 0.644 1.6e-40
UNIPROTKB|D0VWQ3188 RPL18 "Ribosomal protein L18" 0.789 0.718 0.644 2e-40
UNIPROTKB|Q5E973188 RPL18 "60S ribosomal protein L 0.789 0.718 0.644 3.3e-40
UNIPROTKB|I3L6F1188 RPL18 "60S ribosomal protein L 0.789 0.718 0.644 3.3e-40
UNIPROTKB|J3QQ67190 RPL18 "60S ribosomal protein L 0.783 0.705 0.642 5.3e-40
TAIR|locus:2143330 AT5G27850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 117/136 (86%), Positives = 130/136 (95%)

Query:     1 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKP 60
             MGIDL+AGGKSKK+KRTAPKSDD+YLKLLVKLYRFLVRR++SNFN VILKRLFMSKVNK 
Sbjct:     1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query:    61 PLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECL 120
             PLSLSRL+ FM GK+DKIAV+VGT+TDD+R +E+PA+KVTALRFTE ARARIEKAGGECL
Sbjct:    61 PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query:   121 TFDQLALRAPLGQNTV 136
             TFDQLALRAPLGQNTV
Sbjct:   121 TFDQLALRAPLGQNTV 136
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA
GO:0006412 "translation" evidence=IEA;ISS
GO:0015934 "large ribosomal subunit" evidence=ISS
GO:0005773 "vacuole" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
TAIR|locus:2078077 RPL18 "ribosomal protein L18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:98003 Rpl18 "ribosomal protein L18" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621182 Rpl18 "ribosomal protein L18" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V203 RPL18 "60S ribosomal protein L18" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q07020 RPL18 "60S ribosomal protein L18" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|D0VWQ3 RPL18 "Ribosomal protein L18" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E973 RPL18 "60S ribosomal protein L18" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3L6F1 RPL18 "60S ribosomal protein L18" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J3QQ67 RPL18 "60S ribosomal protein L18" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P35980RL18_MOUSENo assigned EC number0.64280.80110.7287yesno
O65729RL18_CICARNo assigned EC number0.84370.74850.6994N/Ano
O45946RL18_CAEELNo assigned EC number0.53620.78940.7180yesno
P69091RL18_ORENINo assigned EC number0.60860.78940.7180yesno
Q54VZ4RL18_DICDINo assigned EC number0.58590.74260.7016yesno
Q4UFD5RL18_THEANNo assigned EC number0.57570.77190.7173yesno
D0VWQ3RL18_CANFANo assigned EC number0.64490.78940.7180yesno
Q5E973RL18_BOVINNo assigned EC number0.64490.78940.7180yesno
Q7QJM5RL18_ANOGANo assigned EC number0.57550.78940.7142yesno
Q8TFH1RL18B_SCHPONo assigned EC number0.58780.83620.7647yesno
Q9VS34RL18_DROMENo assigned EC number0.61590.78940.7180yesno
Q940B0RL183_ARATHNo assigned EC number0.86020.79530.7272yesno
P0CX50RL18B_YEASTNo assigned EC number0.61590.79530.7311yesno
Q2M0G4RL18_DROPSNo assigned EC number0.59850.78360.7089yesno
Q4N438RL18_THEPANo assigned EC number0.60150.77770.7228yesno
P42791RL182_ARATHNo assigned EC number0.86020.79530.7272yesno
Q07020RL18_HUMANNo assigned EC number0.64490.78940.7180yesno
Q10192RL18A_SCHPONo assigned EC number0.59450.83620.7647yesno
Q4QG98RL18_LEIMANo assigned EC number0.52410.77770.6717yesno
P12001RL18_RATNo assigned EC number0.64490.78940.7180yesno
P0CX49RL18A_YEASTNo assigned EC number0.61590.79530.7311yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query171
PTZ00469187 PTZ00469, PTZ00469, 60S ribosomal subunit protein 3e-48
PTZ00195198 PTZ00195, PTZ00195, 60S ribosomal protein L18; Pro 3e-45
COG1727122 COG1727, RPL18A, Ribosomal protein L18E [Translati 8e-36
pfam00828122 pfam00828, Ribosomal_L18e, Ribosomal protein L18e/ 7e-34
PRK04005111 PRK04005, PRK04005, 50S ribosomal protein L18e; Pr 1e-07
PRK06419148 PRK06419, rpl15p, 50S ribosomal protein L15P; Revi 4e-04
PRK05592146 PRK05592, rplO, 50S ribosomal protein L15; Reviewe 0.001
>gnl|CDD|185648 PTZ00469, PTZ00469, 60S ribosomal subunit protein L18; Provisional Back     alignment and domain information 
 Score =  154 bits (390), Expect = 3e-48
 Identities = 82/136 (60%), Positives = 96/136 (70%)

Query: 1   MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKP 60
           MGI L   G+ KK  R    S + YL+LLVKLYRFL RRT++NFNK+I KRL M K  +P
Sbjct: 1   MGIALKNVGRIKKHGRKNLVSKNPYLRLLVKLYRFLARRTNANFNKIIAKRLIMPKRFRP 60

Query: 61  PLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECL 120
           PLSLS+L   M    D +AVVVG++TDD R Y+   LKV ALRFTETAR RI  AGGECL
Sbjct: 61  PLSLSKLHRHMASYPDDVAVVVGSITDDKRLYDCKKLKVCALRFTETARKRILDAGGECL 120

Query: 121 TFDQLALRAPLGQNTV 136
           TFDQLAL+ P GQ  +
Sbjct: 121 TFDQLALKYPTGQKCI 136

Length = 187
>gnl|CDD|140222 PTZ00195, PTZ00195, 60S ribosomal protein L18; Provisional Back     alignment and domain information
>gnl|CDD|224641 COG1727, RPL18A, Ribosomal protein L18E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216140 pfam00828, Ribosomal_L18e, Ribosomal protein L18e/L15 Back     alignment and domain information
>gnl|CDD|235196 PRK04005, PRK04005, 50S ribosomal protein L18e; Provisional Back     alignment and domain information
>gnl|CDD|235799 PRK06419, rpl15p, 50S ribosomal protein L15P; Reviewed Back     alignment and domain information
>gnl|CDD|235523 PRK05592, rplO, 50S ribosomal protein L15; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 171
PTZ00469187 60S ribosomal subunit protein L18; Provisional 100.0
PTZ00195198 60S ribosomal protein L18; Provisional 100.0
COG1727122 RPL18A Ribosomal protein L18E [Translation, riboso 100.0
KOG1714188 consensus 60s ribosomal protein L18 [Translation, 100.0
PRK04005111 50S ribosomal protein L18e; Provisional 100.0
PF00828129 Ribosomal_L18e: Ribosomal protein L18e/L15; InterP 99.74
PRK05592146 rplO 50S ribosomal protein L15; Reviewed 99.69
TIGR01071145 rplO_bact ribosomal protein L15, bacterial/organel 99.67
COG0200152 RplO Ribosomal protein L15 [Translation, ribosomal 99.57
PRK06419148 rpl15p 50S ribosomal protein L15P; Reviewed 99.51
PTZ00160147 60S ribosomal protein L27a; Provisional 99.25
KOG0846274 consensus Mitochondrial/chloroplast ribosomal prot 98.46
KOG1742147 consensus 60s ribosomal protein L15/L27 [Translati 97.46
>PTZ00469 60S ribosomal subunit protein L18; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.6e-51  Score=337.51  Aligned_cols=144  Identities=57%  Similarity=0.832  Sum_probs=139.9

Q ss_pred             CceeeccCCccccCCCCCCCCCCHHHHHHHHHHHHhhhccCChHHHHHHHhhhcCCCCCCccchHHHHhhhccCCCcEEE
Q 030771            1 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAV   80 (171)
Q Consensus         1 mg~~~~~~~~~~~~~rk~~~stN~~L~~Li~~lk~~ar~t~~pl~rrI~KRlf~~r~~~~~VNLs~L~~~~~~~e~k~vv   80 (171)
                      ||||+.+++++++++|++|+||||||++||++|+++||+|++|||++|++||++|+++++|||||+|++++++.|++++|
T Consensus         1 mgid~~~~~~~~k~~r~~~~stN~yL~~Lik~yk~larrt~a~fwk~Va~RL~~srrnr~pVnLSkI~r~~~~ke~~~~V   80 (187)
T PTZ00469          1 MGIALKNVGRIKKHGRKNLVSKNPYLRLLVKLYRFLARRTNANFNKIIAKRLIMPKRFRPPLSLSKLHRHMASYPDDVAV   80 (187)
T ss_pred             CceecccCccccCCCccCCCCCCHHHHHHHHHHHHHHHhhCChHHHHHHHHHhcccccCCceeHHHHHHHhccCCCCEEE
Confidence            99999966899999999999999999999999999999999999999999999999999999999999999666899999


Q ss_pred             EEeeecCCceeecccCeEEEEEecCHHHHHHHHHhCCEEEeHHHHHHhCCCCCcEEEeecCCCc
Q 030771           81 VVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVCVFNANYC  144 (171)
Q Consensus        81 v~~KVLg~G~lt~v~kl~V~A~kfS~sAreKIekAGGkv~~ldqL~~~~P~G~~v~ll~g~~~~  144 (171)
                      +||||||||+|.|||+++|||++||++|+++|++|||+|++||||+++||+|+||+||+||+-+
T Consensus        81 VvGkVl~dgrl~~vpkvtVaAL~fS~~Ar~kI~~AGGe~lT~dqLa~~~P~G~nv~Ll~g~r~~  144 (187)
T PTZ00469         81 VVGSITDDKRLYDCKKLKVCALRFTETARKRILDAGGECLTFDQLALKYPTGQKCILLRGPTKA  144 (187)
T ss_pred             EEeeEccCccccccCceEEEEEecCHHHHHHHHHhCCEEEeHHHHHHHCCCCCceEEEECCCch
Confidence            9999999999999999999999999999999999999999999999999999999999999764

>PTZ00195 60S ribosomal protein L18; Provisional Back     alignment and domain information
>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1714 consensus 60s ribosomal protein L18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04005 50S ribosomal protein L18e; Provisional Back     alignment and domain information
>PF00828 Ribosomal_L18e: Ribosomal protein L18e/L15; InterPro: IPR021131 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK05592 rplO 50S ribosomal protein L15; Reviewed Back     alignment and domain information
>TIGR01071 rplO_bact ribosomal protein L15, bacterial/organelle Back     alignment and domain information
>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06419 rpl15p 50S ribosomal protein L15P; Reviewed Back     alignment and domain information
>PTZ00160 60S ribosomal protein L27a; Provisional Back     alignment and domain information
>KOG0846 consensus Mitochondrial/chloroplast ribosomal protein L15/L10 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1742 consensus 60s ribosomal protein L15/L27 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query171
3izr_R188 Localization Of The Large Subunit Ribosomal Protein 3e-60
3izs_R186 Localization Of The Large Subunit Ribosomal Protein 4e-39
2zkr_o188 Structure Of A Mammalian Ribosomal 60s Subunit With 4e-38
3zf7_I193 High-resolution Cryo-electron Microscopy Structure 3e-35
3jyw_O121 Structure Of The 60s Proteins For Eukaryotic Riboso 6e-34
4a17_N181 T.Thermophila 60s Ribosomal Subunit In Complex With 7e-34
1s1i_O120 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 2e-33
3j21_P120 Promiscuous Behavior Of Proteins In Archaeal Riboso 5e-04
>pdb|3IZR|R Chain R, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 188 Back     alignment and structure 
Iteration: 1

 Score =  227 bits (578), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 111/137 (81%), Positives = 124/137 (90%), Gaps = 1/137 (0%)
Query: 1   MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKP 60
           MGIDLVAGG++K++KR APKSDD+YLKLLVKLYRFLVRRT S FN VILKRLFMSK N+P
Sbjct: 1   MGIDLVAGGRNKRTKRVAPKSDDVYLKLLVKLYRFLVRRTKSKFNAVILKRLFMSKTNRP 60
Query: 61  PLSLSRLINFMKGKEDK-IAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGEC 119
           PLS+ RL NFMKGKE+K IAVVVGT+TDD+R  EVPA+KVTALRFTETARARI  AGGEC
Sbjct: 61  PLSMRRLSNFMKGKEEKNIAVVVGTITDDMRIQEVPAMKVTALRFTETARARIINAGGEC 120
Query: 120 LTFDQLALRAPLGQNTV 136
           LTFDQLALRAP G+NT+
Sbjct: 121 LTFDQLALRAPTGENTI 137
>pdb|3IZS|R Chain R, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 186 Back     alignment and structure
>pdb|2ZKR|OO Chain o, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 188 Back     alignment and structure
>pdb|3ZF7|I Chain I, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 193 Back     alignment and structure
>pdb|3JYW|O Chain O, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 121 Back     alignment and structure
>pdb|4A17|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 181 Back     alignment and structure
>pdb|1S1I|O Chain O, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 120 Back     alignment and structure
>pdb|3J21|P Chain P, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 120 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query171
3iz5_R188 60S ribosomal protein L18 (L18E); eukaryotic ribos 2e-64
2zkr_o188 60S ribosomal protein L18; protein-RNA complex, 60 1e-61
3izc_R186 60S ribosomal protein RPL18 (L18E); eukaryotic rib 2e-61
4a17_N181 RPL18, 60S ribosomal protein L5; eukaryotic riboso 6e-58
3jyw_O121 60S ribosomal protein L18(A); eukaryotic ribosome, 8e-50
1vq8_O116 50S ribosomal protein L18E; ribosome 50S, protein- 1e-43
2zjr_I156 50S ribosomal protein L15; ribosome, large ribosom 2e-05
3v2d_P150 50S ribosomal protein L15; ribosome associated inh 3e-04
3r8s_L143 50S ribosomal protein L15; protein biosynthesis, R 4e-04
3bbo_N257 Ribosomal protein L15; large ribosomal subunit, sp 8e-04
>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 188 Back     alignment and structure
>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N Length = 181 Back     alignment and structure
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O Length = 121 Back     alignment and structure
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ... Length = 116 Back     alignment and structure
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M Length = 156 Back     alignment and structure
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ... Length = 150 Back     alignment and structure
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L 2i2v_L ... Length = 143 Back     alignment and structure
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 257 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query171
3iz5_R188 60S ribosomal protein L18 (L18E); eukaryotic ribos 100.0
4a17_N181 RPL18, 60S ribosomal protein L5; eukaryotic riboso 100.0
3izc_R186 60S ribosomal protein RPL18 (L18E); eukaryotic rib 100.0
2zkr_o188 60S ribosomal protein L18; protein-RNA complex, 60 100.0
3jyw_O121 60S ribosomal protein L18(A); eukaryotic ribosome, 100.0
3j21_P120 50S ribosomal protein L18E; archaea, archaeal, KIN 100.0
1vq8_O116 50S ribosomal protein L18E; ribosome 50S, protein- 100.0
3r8s_L143 50S ribosomal protein L15; protein biosynthesis, R 99.72
3v2d_P150 50S ribosomal protein L15; ribosome associated inh 99.63
2zjr_I156 50S ribosomal protein L15; ribosome, large ribosom 99.62
3j21_L147 50S ribosomal protein L15P; archaea, archaeal, KIN 99.58
1vq8_L165 50S ribosomal protein L15P; ribosome 50S, protein- 99.58
2zkr_l148 60S ribosomal protein L27A; protein-RNA complex, 6 99.53
3bbo_N257 Ribosomal protein L15; large ribosomal subunit, sp 99.47
4a17_K149 L29, RPL27A, 60S ribosomal protein L27A; eukaryoti 99.36
3o58_Y149 60S ribosomal protein L28; ribosomal RNA and prote 99.14
3iz5_O144 60S ribosomal protein L27A (L15P); eukaryotic ribo 98.92
>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N Back     alignment and structure
>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O Back     alignment and structure
>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ... Back     alignment and structure
>3r8s_L 50S ribosomal protein L15; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_L 3j19_L 2wwq_L 3oat_L* 3oas_L* 3ofd_L 3ofc_L 3ofr_L* 3ofz_L* 3og0_L 3ofq_L 3r8t_L 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L ... Back     alignment and structure
>3v2d_P 50S ribosomal protein L15; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ... Back     alignment and structure
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 3pio_I* 3pip_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M Back     alignment and structure
>3j21_L 50S ribosomal protein L15P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ... Back     alignment and structure
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>4a17_K L29, RPL27A, 60S ribosomal protein L27A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_K 4a1c_K 4a1e_K Back     alignment and structure
>3o58_Y 60S ribosomal protein L28; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3o5h_Y 3izc_O 3izs_O 3u5e_a 3u5i_a 4b6a_a 1s1i_V 3jyw_V Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 171
d1vqoo1115 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeo 2e-34
d2zjri1141 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {D 3e-06
d2gycj1140 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {E 2e-05
d2j01p1146 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {T 9e-04
d1vqol1150 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {A 0.001
>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 115 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L18e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  115 bits (289), Expect = 2e-34
 Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 23  DIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVV 82
           +  L  L+   +   R +       + +RL   +     ++L R+  +   +ED+  VV 
Sbjct: 4   NPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYA--QEDETVVVP 61

Query: 83  GTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTV 136
           G V           + V A+ F+ TA  +I++ G   ++ +Q     P G +  
Sbjct: 62  GKVLGSGVL--QKDVTVAAVDFSGTAETKIDQVGE-AVSLEQAIENNPEGSHVR 112
>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]} Length = 141 Back     information, alignment and structure
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]} Length = 140 Back     information, alignment and structure
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]} Length = 146 Back     information, alignment and structure
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query171
d1vqoo1115 Ribosomal protein L18e {Archaeon Haloarcula marism 100.0
d2zjri1141 Ribosomal protein L15 (L15p) {Deinococcus radiodur 99.57
d2j01p1146 Ribosomal protein L15 (L15p) {Thermus thermophilus 99.46
d1vqol1150 Ribosomal protein L15 (L15p) {Archaeon Haloarcula 99.45
d2gycj1140 Ribosomal protein L15 (L15p) {Escherichia coli [Ta 99.37
>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L18e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.5e-40  Score=252.35  Aligned_cols=114  Identities=20%  Similarity=0.285  Sum_probs=110.3

Q ss_pred             CCCHHHHHHHHHHHHhhhccCChHHHHHHHhhhcCCCCCCccchHHHHhhhccCCCcEEEEEeeecCCceeecccCeEEE
Q 030771           21 SDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVT  100 (171)
Q Consensus        21 stN~~L~~Li~~lk~~ar~t~~pl~rrI~KRlf~~r~~~~~VNLs~L~~~~~~~e~k~vvv~~KVLg~G~lt~v~kl~V~  100 (171)
                      +|||||+.||++|+++||++++|||++|++||++|+++|++|||++|+++++  +++++++||||||+|+++  ++++|+
T Consensus         2 kTNp~l~~lI~~lk~~sr~~~a~iwk~va~rL~~~rr~r~~VnLski~~~~k--~~~~vvvpgKVLg~G~l~--~k~~V~   77 (115)
T d1vqoo1           2 KTNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQ--EDETVVVPGKVLGSGVLQ--KDVTVA   77 (115)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHSCGGGSEEEEHHHHHHHCC--TTSEEEEEEEEECCSCCC--SCCEEE
T ss_pred             CCCHHHHHHHHHHHHHHhhhcCHHHHHHHHHHhcccccCCCccHHHHHHhcc--CCCEEEEeeEEecccEEc--CCEEEE
Confidence            6899999999999999999999999999999999999999999999999987  789999999999999999  999999


Q ss_pred             EEecCHHHHHHHHHhCCEEEeHHHHHHhCCCCCcEEEee
Q 030771          101 ALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVCVF  139 (171)
Q Consensus       101 A~kfS~sAreKIekAGGkv~~ldqL~~~~P~G~~v~ll~  139 (171)
                      |++||++|++|||+||| +++++||++.||+|+||+||+
T Consensus        78 A~~fS~sA~~kI~~aGg-~iti~el~~~nP~G~~v~ilr  115 (115)
T d1vqoo1          78 AVDFSGTAETKIDQVGE-AVSLEQAIENNPEGSHVRVIR  115 (115)
T ss_dssp             EEEECHHHHHHHHHHSE-EEEHHHHHHHCTTCCSEEECC
T ss_pred             EeecCHHHHHHHHHcCC-EEEHHHHHHHCCCCCCeEEeC
Confidence            99999999999999975 889999999999999999985
>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure