Citrus Sinensis ID: 030794

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLMNAGYEYGNTLHSCFLSVHSVACHLMAVVIGSESWW
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHccccccEEEEEcccccEEEEEEEEEccccccccccEEEEEEEccccccccccEEEEEcccccccccccccEEEEccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHcccccccEEEEEEccEEEEEEEEEEccccccccccEEEEEEEccccccccccEEEEccccccccEccccEEccHHHccccccccccccHHHcccccccHHEEEEEcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MAKSQASLLLQKQLKDlcknpvdgfsaglvdesnvfewsvsiigppdtlyeggffnaimtfpdnypvspptvrftsemwhpnvypdgkvcisilhppgddpngyelaterwtpvhtaasvwrslspgvlNYAWFLMNAGYEYGNTLHSCFLSVHSVACHLMAVVIGSESWW
Flexible Loop (DISEMBL)
MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLMNAGYEYGNTLHSCFLSVHSVACHLMAVVIGSESWW
Low Complexity Region (SEG)
MaksqaslllqkqlkDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLMNAGYEYGNTLHSCFLSVHSVACHLMAVVIGSESWW
Disordered region (IsUnstruct)
***********KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLMNAGYEYGNTLHSCFLSVHSVACHLMAVVIGS****
Disordered Region (DISOPRED)
*****AS***QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLMNAGYEYGNTLHSCFLSVHSVACHLMAVVIG*****
Disordered Region (DISEMBL)
MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLMNAGYEYGNTLHSCFLSVHSVACHLMAVVIGSESWW
Disordered Region (DISPRO)
****QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLMNAGYEYGNTLHSCFLSVHSVACHLMAVVIGSESW*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLMNAGYEYGNTLHSCFLSVHSVACHLMAVVIGSESWW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
P42747	167	Ubiquitin-conjugating enz	yes	no	0.725	0.742	0.854	7e-53
Q42540	166	Ubiquitin-conjugating enz	no	no	0.707	0.728	0.859	4e-52
Q42541	166	Ubiquitin-conjugating enz	no	no	0.707	0.728	0.834	2e-50
P25868	168	Ubiquitin-conjugating enz	N/A	no	0.602	0.613	0.778	3e-44
Q9Y818	167	Ubiquitin-conjugating enz	yes	no	0.725	0.742	0.604	5e-42
P34477	164	Probable ubiquitin-conjug	yes	no	0.853	0.890	0.5	4e-41
P62255	170	Ubiquitin-conjugating enz	yes	no	0.725	0.729	0.564	8e-40
P62254	170	Ubiquitin-conjugating enz	yes	no	0.725	0.729	0.564	8e-40
P62253	170	Ubiquitin-conjugating enz	yes	no	0.725	0.729	0.564	8e-40
Q4R5Y8	170	Ubiquitin-conjugating enz	N/A	no	0.725	0.729	0.556	7e-39

>sp|P42747|UBC14_ARATH Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1

 Score =  206 bits (523), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 106/124 (85%), Positives = 115/124 (92%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           MA +QASLLLQKQLKDLCK PVDGFSAGLVDE NVF+WSVSI+GPPDTLYEGGFFNAIM+
Sbjct: 1   MANNQASLLLQKQLKDLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMS 60

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           FP+NYPVSPPTV FTSEMWHPNVY DGKVCISILHPPGDDP+GYELA+ERWTPVHT  S+
Sbjct: 61  FPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESI 120

Query: 121 WRSL 124
             S+
Sbjct: 121 VLSI 124

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Involved in the formation of multiubiquitin chains. Signal the protein for selective degradation.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9

>sp|Q42540|UBC7_ARATH Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1

 Score =  203 bits (517), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 104/121 (85%), Positives = 113/121 (93%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
           SQASLLLQKQLKDLCK+PVDGFSAGLVDE N+FEWSV+IIGPPDTLYEGGFFNAIMTFP 
Sbjct: 3   SQASLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQ 62

Query: 64  NYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRS 123
           NYP SPPTVRFTS+MWHPNVY DG+VCISILHPPGDDP+GYELA+ERWTPVHT  S+  S
Sbjct: 63  NYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLS 122

Query: 124 L 124
           +
Sbjct: 123 I 123

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Involved in the formation of multiubiquitin chains. Signal the protein for selective degradation.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q42541|UBC13_ARATH Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1

 Score =  197 bits (502), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/121 (83%), Positives = 112/121 (92%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
           SQA LLLQKQLKDLCK+PVDGFSAGLVDE N+FEWSV+IIGPPDTLYEGGFF AIM+FP 
Sbjct: 3   SQACLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQ 62

Query: 64  NYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRS 123
           NYP SPPTVRFTS++WHPNVYPDG+VCISILHPPGDDP+GYELA+ERWTPVHT  S+  S
Sbjct: 63  NYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLS 122

Query: 124 L 124
           +
Sbjct: 123 I 123

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. Involved in the formation of multiubiquitin chains. Signal the protein for selective degradation.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P25868|UBC7_WHEAT Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1

 Score =  177 bits (449), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 81/104 (77%), Positives = 91/104 (87%), Gaps = 1/104 (0%)

Query: 21  PVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH 80
           P  GF  G VD+SNVFEW V+IIGPP+TLY+GG+FNAIM+FP NYP SPPTVRFTSEMWH
Sbjct: 23  PSMGFQLGFVDDSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWH 82

Query: 81  PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           PNVYPDG+VCISI HPPGDDPNGYELA+ERWTPVHT  S+  S+
Sbjct: 83  PNVYPDGRVCISI-HPPGDDPNGYELASERWTPVHTVESIVLSI 125

Catalyzes the covalent attachment of ubiquitin to other proteins so as to signal them for selective protein degradation. Involved in the formation of multiubiquitin chains.

Triticum aestivum (taxid: 4565)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q9Y818|UBC15_SCHPO Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubc15 PE=3 SV=1

 Score =  170 bits (430), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 75/124 (60%), Positives = 98/124 (79%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           M  S +  LL+KQLK++ KNP  GFS GLVD+ ++FEW V IIGP DTLYEGGFF+A ++
Sbjct: 1   MPSSASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLS 60

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           FP +YP+ PP ++FT+E+WHPNV+P+G+VCISILHPPGDD  GYE A ERW PVH+  ++
Sbjct: 61  FPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETI 120

Query: 121 WRSL 124
             S+
Sbjct: 121 LISV 124

Catalyzes the covalent attachment of ubiquitin to other proteins. Has a role in the formation of chromatin structures that influence the localization of transcriptional silencing factors.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P34477|UBC7_CAEEL Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1

 Score =  167 bits (422), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 103/156 (66%), Gaps = 10/156 (6%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
            Q+SLLL+KQL D+ + PVDGFSAGLVD++++++W V +IGPPDTLYEGGFF AI+ FP 
Sbjct: 2   EQSSLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPR 61

Query: 64  NYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRS 123
           +YP  PP ++F SE+WHPN+  +G VCISILH PGDD  GYE   ERW PVHT  ++  S
Sbjct: 62  DYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLS 121

Query: 124 L----------SPGVLNYAWFLMNAGYEYGNTLHSC 149
           +          SP  ++ A        E+   +  C
Sbjct: 122 VISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQC 157

Catalyzes the covalent attachment of ubiquitin to other proteins.

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P62255|UB2G1_RAT Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3

 Score =  162 bits (411), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 70/124 (56%), Positives = 96/124 (77%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           M + Q++LLL++QL +L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +T
Sbjct: 1   MTELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLT 60

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           FP +YP+ PP ++F +E+WHPNV  +G VCISILH PG+D  GYE   ERW P+HT  ++
Sbjct: 61  FPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETI 120

Query: 121 WRSL 124
             S+
Sbjct: 121 MISV 124

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-, as well as 'Lys-63'-linked polyubiquitination. May be involved in degradation of muscle-specific proteins. Mediates polyubiquitination of CYP3A4.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P62254|UB2G1_MOUSE Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3

 Score =  162 bits (411), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 70/124 (56%), Positives = 96/124 (77%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           M + Q++LLL++QL +L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +T
Sbjct: 1   MTELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLT 60

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           FP +YP+ PP ++F +E+WHPNV  +G VCISILH PG+D  GYE   ERW P+HT  ++
Sbjct: 61  FPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETI 120

Query: 121 WRSL 124
             S+
Sbjct: 121 MISV 124

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-, as well as 'Lys-63'-linked polyubiquitination. May be involved in degradation of muscle-specific proteins. Mediates polyubiquitination of CYP3A4.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P62253|UB2G1_HUMAN Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3

 Score =  162 bits (411), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 70/124 (56%), Positives = 96/124 (77%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           M + Q++LLL++QL +L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +T
Sbjct: 1   MTELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLT 60

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           FP +YP+ PP ++F +E+WHPNV  +G VCISILH PG+D  GYE   ERW P+HT  ++
Sbjct: 61  FPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETI 120

Query: 121 WRSL 124
             S+
Sbjct: 121 MISV 124

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-, as well as 'Lys-63'-linked polyubiquitination. May be involved in degradation of muscle-specific proteins. Mediates polyubiquitination of CYP3A4.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q4R5Y8|UB2G1_MACFA Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1

 Score =  159 bits (403), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 69/124 (55%), Positives = 95/124 (76%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           M + Q++LLL++QL +L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +T
Sbjct: 1   MTELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLT 60

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           FP +YP+ PP ++F +E+WHPNV  +G VCISILH PG+D  GYE    RW P+HT  ++
Sbjct: 61  FPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETI 120

Query: 121 WRSL 124
             S+
Sbjct: 121 MISV 124

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-, as well as 'Lys-63'-linked polyubiquitination. May be involved in degradation of muscle-specific proteins. Mediates polyubiquitination of CYP3A4.

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
255575056	167	ubiquitin-conjugating enzyme E2 G, putat	0.871	0.892	0.716	5e-60
224109530	164	predicted protein [Populus trichocarpa]	0.707	0.737	0.884	7e-60
224109528	167	predicted protein [Populus trichocarpa]	0.871	0.892	0.704	3e-59
388490688	167	unknown [Lotus japonicus] gi|388504240|g	0.725	0.742	0.862	5e-59
224100961	164	predicted protein [Populus trichocarpa]	0.853	0.890	0.717	6e-59
388490522	167	unknown [Lotus japonicus]	0.725	0.742	0.854	2e-58
224100959	167	predicted protein [Populus trichocarpa]	0.725	0.742	0.830	1e-57
326488721	169	predicted protein [Hordeum vulgare subsp	0.719	0.727	0.829	5e-57
357133379	169	PREDICTED: ubiquitin-conjugating enzyme	0.707	0.715	0.834	1e-56
242059181	169	hypothetical protein SORBIDRAFT_03g03932	0.707	0.715	0.826	4e-56

>gi|255575056|ref|XP_002528433.1| ubiquitin-conjugating enzyme E2 G, putative [Ricinus communis] gi|223532109|gb|EEF33916.1| ubiquitin-conjugating enzyme E2 G, putative [Ricinus communis]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 114/159 (71%), Positives = 127/159 (79%), Gaps = 10/159 (6%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           MA SQASLLLQKQL+DLCKNPVDGFSAGLVDE+NVFEWSVSI+GPPDTLYEGGFFNAIMT
Sbjct: 1   MASSQASLLLQKQLRDLCKNPVDGFSAGLVDENNVFEWSVSIMGPPDTLYEGGFFNAIMT 60

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           FP NYP SPPTVRFTSE+WHPNVY DGKVCISILHPPGDDPNGYELATERW+PVHT  S+
Sbjct: 61  FPQNYPNSPPTVRFTSELWHPNVYADGKVCISILHPPGDDPNGYELATERWSPVHTVESI 120

Query: 121 WRSL----------SPGVLNYAWFLMNAGYEYGNTLHSC 149
             S+          SP  ++ A    ++  E+   +  C
Sbjct: 121 VLSIISMLSSPNDESPANVDAAKQWRDSKEEFRKRVGRC 159

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109530|ref|XP_002315227.1| predicted protein [Populus trichocarpa] gi|222864267|gb|EEF01398.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (598), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 107/121 (88%), Positives = 116/121 (95%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
           SQASLLLQKQL+DLCKNPVDGFSAGL+DE+NVFEWSV+IIGPPDTLYEGGFFNAIM+FP 
Sbjct: 1   SQASLLLQKQLRDLCKNPVDGFSAGLIDETNVFEWSVTIIGPPDTLYEGGFFNAIMSFPQ 60

Query: 64  NYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRS 123
           NYPVSPPTVRFTSE+WHPNVYPDGKVCISILHPPGDDPNGYELATERW+PVHT  S+  S
Sbjct: 61  NYPVSPPTVRFTSEVWHPNVYPDGKVCISILHPPGDDPNGYELATERWSPVHTVESIVLS 120

Query: 124 L 124
           +
Sbjct: 121 I 121

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109528|ref|XP_002315226.1| predicted protein [Populus trichocarpa] gi|118481334|gb|ABK92610.1| unknown [Populus trichocarpa] gi|222864266|gb|EEF01397.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (593), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/159 (70%), Positives = 126/159 (79%), Gaps = 10/159 (6%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           MA SQA LLLQKQL+DLCKNPVDGFSAGLVDE+++FEWSVSIIGPPDTLY+GGFFNAIM+
Sbjct: 1   MAASQAILLLQKQLRDLCKNPVDGFSAGLVDETDMFEWSVSIIGPPDTLYDGGFFNAIMS 60

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           FP NYP SPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERW+PVHT  S+
Sbjct: 61  FPKNYPNSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWSPVHTVESI 120

Query: 121 WRSL----------SPGVLNYAWFLMNAGYEYGNTLHSC 149
             S+          SP  ++ A     +  E+   +  C
Sbjct: 121 VLSIISMLSSPNDESPANVDAAKQWRESREEFRKKVSRC 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490688|gb|AFK33410.1| unknown [Lotus japonicus] gi|388504240|gb|AFK40186.1| unknown [Lotus japonicus]

 Score =  232 bits (591), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 107/124 (86%), Positives = 116/124 (93%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           MA SQASLLLQKQL+DL KNPVDGFSAGLVD+SNVFEWSV+IIGPPDTLYEGGFFNAIM+
Sbjct: 1   MASSQASLLLQKQLRDLSKNPVDGFSAGLVDDSNVFEWSVTIIGPPDTLYEGGFFNAIMS 60

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           FP NYP SPPTV+FTSEMWHPNVYPDG+VCISILHPPGDDPNGYELA+ERWTPVHT  S+
Sbjct: 61  FPSNYPNSPPTVKFTSEMWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESI 120

Query: 121 WRSL 124
             S+
Sbjct: 121 VLSI 124

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100961|ref|XP_002312086.1| predicted protein [Populus trichocarpa] gi|222851906|gb|EEE89453.1| predicted protein [Populus trichocarpa]

 Score =  231 bits (590), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 112/156 (71%), Positives = 125/156 (80%), Gaps = 10/156 (6%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
           SQASLLLQKQL+DLCK PVDGFSAGLVDES+VFEWSVSI+GPPDTLYEGGFFNAIM+FP 
Sbjct: 1   SQASLLLQKQLRDLCKKPVDGFSAGLVDESDVFEWSVSIMGPPDTLYEGGFFNAIMSFPK 60

Query: 64  NYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRS 123
           NYP SPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERW+PVHT  S+  S
Sbjct: 61  NYPNSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWSPVHTVESIVLS 120

Query: 124 L----------SPGVLNYAWFLMNAGYEYGNTLHSC 149
           +          SP  ++ A    ++  E+   +  C
Sbjct: 121 IISMLSGPNDESPANVDAAKQWRDSREEFRKRVSRC 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490522|gb|AFK33327.1| unknown [Lotus japonicus]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/124 (85%), Positives = 116/124 (93%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           MA S+ASLLLQKQL+DL KNPVDGFSAGLVD+SNVFEWSV+IIGPPDTLYEGGFFNAIM+
Sbjct: 1   MASSRASLLLQKQLRDLSKNPVDGFSAGLVDDSNVFEWSVTIIGPPDTLYEGGFFNAIMS 60

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           FP NYP SPPTV+FTSEMWHPNVYPDG+VCISILHPPGDDPNGYELA+ERWTPVHT  S+
Sbjct: 61  FPSNYPNSPPTVKFTSEMWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESI 120

Query: 121 WRSL 124
             S+
Sbjct: 121 VLSI 124

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100959|ref|XP_002312085.1| predicted protein [Populus trichocarpa] gi|222851905|gb|EEE89452.1| predicted protein [Populus trichocarpa]

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/124 (83%), Positives = 115/124 (92%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           MA SQ SLLLQKQL++LCKNPVDGFSAGL+DE+NVFEW+V+IIGPPDTLYEGGFFNA M+
Sbjct: 1   MAASQGSLLLQKQLRNLCKNPVDGFSAGLIDENNVFEWNVTIIGPPDTLYEGGFFNATMS 60

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           FP NYPVSPPTVRFTSE+WHPNVY +GKVCISILHPPGDDPNGYELATERW+PVHT  S+
Sbjct: 61  FPQNYPVSPPTVRFTSEVWHPNVYANGKVCISILHPPGDDPNGYELATERWSPVHTVESI 120

Query: 121 WRSL 124
             S+
Sbjct: 121 VLSI 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326488721|dbj|BAJ97972.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  225 bits (573), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 102/123 (82%), Positives = 114/123 (92%)

Query: 2   AKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTF 61
           A SQASLLLQKQL+DL K+PVDGFSAGLVD+SNVFEW V+IIGPP+TLY+GG+FNAIM+F
Sbjct: 4   ASSQASLLLQKQLRDLAKHPVDGFSAGLVDDSNVFEWQVTIIGPPETLYDGGYFNAIMSF 63

Query: 62  PDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVW 121
           P NYP SPPTVRFTSEMWHPNVYPDG+VCISILHPPGDDPNGYELA+ERWTPVHT  S+ 
Sbjct: 64  PQNYPNSPPTVRFTSEMWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIV 123

Query: 122 RSL 124
            S+
Sbjct: 124 LSI 126

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357133379|ref|XP_003568302.1| PREDICTED: ubiquitin-conjugating enzyme E2 7-like [Brachypodium distachyon]

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 101/121 (83%), Positives = 113/121 (93%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
           SQASLLLQKQL+DL KNPVDGFSAGLVD+SNVFEW V+IIGPP+TLY+GG+FNAIMTFP 
Sbjct: 6   SQASLLLQKQLRDLSKNPVDGFSAGLVDDSNVFEWQVTIIGPPETLYDGGYFNAIMTFPQ 65

Query: 64  NYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRS 123
           NYP SPP+VRFTSEMWHPNVYPDG+VCISILHPPG+DPNGYELA+ERWTPVHT  S+  S
Sbjct: 66  NYPNSPPSVRFTSEMWHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTVESIVLS 125

Query: 124 L 124
           +
Sbjct: 126 I 126

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242059181|ref|XP_002458736.1| hypothetical protein SORBIDRAFT_03g039320 [Sorghum bicolor] gi|241930711|gb|EES03856.1| hypothetical protein SORBIDRAFT_03g039320 [Sorghum bicolor]

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 100/121 (82%), Positives = 113/121 (93%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
           SQASLLLQKQL+DL K+PVDGFSAGLVD+SNVFEW V+IIGPPDTLY+GG+FNAIM+FP 
Sbjct: 6   SQASLLLQKQLRDLAKHPVDGFSAGLVDDSNVFEWQVTIIGPPDTLYDGGYFNAIMSFPQ 65

Query: 64  NYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRS 123
           NYP SPP+VRFTSEMWHPNVYPDG+VCISILHPPG+DPNGYELA+ERWTPVHT  S+  S
Sbjct: 66  NYPNSPPSVRFTSEMWHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTVESIVLS 125

Query: 124 L 124
           +
Sbjct: 126 I 126

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2078231	166	UBC13 "AT3G46460" [Arabidopsis	0.637	0.656	0.825	1.7e-50
DICTYBASE|DDB_G0271726	171	DDB_G0271726 "Ubiquitin-conjug	0.608	0.608	0.647	1.5e-37
POMBASE|SPBC1105.09	167	ubc15 "ubiquitin conjugating e	0.614	0.628	0.628	2.4e-37
FB|FBgn0058045	168	CG40045 [Drosophila melanogast	0.614	0.625	0.628	2.1e-36
WB|WBGene00006704	164	ubc-7 [Caenorhabditis elegans	0.637	0.664	0.596	1.5e-35
FB|FBgn0038175	180	CG9602 [Drosophila melanogaste	0.637	0.605	0.596	1.3e-34
UNIPROTKB|F1NUK3	155	UBE2G1 "Uncharacterized protei	0.637	0.703	0.577	1.3e-34
UNIPROTKB|F1P0G0	172	UBE2G1 "Uncharacterized protei	0.637	0.633	0.577	1.3e-34
UNIPROTKB|A2VE20	170	UBE2G1 "Uncharacterized protei	0.637	0.641	0.577	1.3e-34
UNIPROTKB|J9NT64	170	UBE2G1 "Uncharacterized protei	0.637	0.641	0.577	1.3e-34

TAIR|locus:2078231 UBC13 "AT3G46460" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 90/109 (82%), Positives = 101/109 (92%)

Query:    16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
             DLCK+PVDGFSAGLVDE N+FEWSV+IIGPPDTLYEGGFF AIM+FP NYP SPPTVRFT
Sbjct:    15 DLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFT 74

Query:    76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
             S++WHPNVYPDG+VCISILHPPGDDP+GYELA+ERWTPVHT  S+  S+
Sbjct:    75 SDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSI 123

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA;TAS

DICTYBASE|DDB_G0271726 DDB_G0271726 "Ubiquitin-conjugating enzyme E2 G1" [Dictyostelium discoideum (taxid:44689)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 68/105 (64%), Positives = 85/105 (80%)

Query:    16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
             +L KNP+DGFSAGLVDESN++EW + I+GPPDTLYEGG FNA ++F   YPV PP ++F 
Sbjct:    22 ELNKNPIDGFSAGLVDESNIYEWQIMIMGPPDTLYEGGIFNATLSFTPEYPVKPPKMKFI 81

Query:    76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
             +EMWHPNVY +G+VCISILH  G+D  GYE + ERW+PVHT  S+
Sbjct:    82 TEMWHPNVYKEGEVCISILHE-GEDAYGYEKSNERWSPVHTVESI 125

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

POMBASE|SPBC1105.09 ubc15 "ubiquitin conjugating enzyme Ubc15" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 66/105 (62%), Positives = 86/105 (81%)

Query:    16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
             ++ KNP  GFS GLVD+ ++FEW V IIGP DTLYEGGFF+A ++FP +YP+ PP ++FT
Sbjct:    16 EIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFT 75

Query:    76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
             +E+WHPNV+P+G+VCISILHPPGDD  GYE A ERW PVH+  ++
Sbjct:    76 TEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETI 120

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISM

GO:0030466 "chromatin silencing at silent mating-type cassette" evidence=IMP

FB|FBgn0058045 CG40045 [Drosophila melanogaster (taxid:7227)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 66/105 (62%), Positives = 83/105 (79%)

Query:    16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
             +L KNPV+GFSAGL+DE+++F W V IIGPPDTLYEGGFF A + FP  YP+ PP ++F 
Sbjct:    16 ELNKNPVEGFSAGLIDENDIFRWEVLIIGPPDTLYEGGFFKAHLYFPKEYPLRPPRMKFV 75

Query:    76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
             +E+WHPN+  +G VCISILH PGDD  GYE A+ERW PVHT  ++
Sbjct:    76 TEIWHPNIEKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETI 120

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

WB|WBGene00006704 ubc-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 65/109 (59%), Positives = 84/109 (77%)

Query:    16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
             D+ + PVDGFSAGLVD++++++W V +IGPPDTLYEGGFF AI+ FP +YP  PP ++F 
Sbjct:    14 DMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFI 73

Query:    76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
             SE+WHPN+  +G VCISILH PGDD  GYE   ERW PVHT  ++  S+
Sbjct:    74 SEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSV 122

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

FB|FBgn0038175 CG9602 [Drosophila melanogaster (taxid:7227)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 65/109 (59%), Positives = 83/109 (76%)

Query:    16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
             +L ++PV+GFSAGLV +S++F+W V IIGPPDTLYEGGFF A + FP  YP+ PP ++F 
Sbjct:    28 ELQRHPVEGFSAGLVSDSDIFKWEVVIIGPPDTLYEGGFFKAHLIFPKEYPLRPPKMKFI 87

Query:    76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
             +E+WHPN+   G VCISILH PGDD  GYE A ERW PVHT  ++  S+
Sbjct:    88 TEIWHPNIDKAGDVCISILHEPGDDKWGYEKAEERWLPVHTVETILLSV 136

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

UNIPROTKB|F1NUK3 UBE2G1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 63/109 (57%), Positives = 84/109 (77%)

Query:    16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
             +L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +TFP +YP+ PP ++F 
Sbjct:     1 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFI 60

Query:    76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
             +E+WHPNV  +G VCISILH PG+D  GYE   ERW P+HT  ++  S+
Sbjct:    61 TEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISV 109

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

UNIPROTKB|F1P0G0 UBE2G1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 63/109 (57%), Positives = 84/109 (77%)

Query:    16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
             +L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +TFP +YP+ PP ++F 
Sbjct:    18 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFI 77

Query:    76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
             +E+WHPNV  +G VCISILH PG+D  GYE   ERW P+HT  ++  S+
Sbjct:    78 TEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISV 126

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

UNIPROTKB|A2VE20 UBE2G1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 63/109 (57%), Positives = 84/109 (77%)

Query:    16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
             +L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +TFP +YP+ PP ++F 
Sbjct:    16 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFI 75

Query:    76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
             +E+WHPNV  +G VCISILH PG+D  GYE   ERW P+HT  ++  S+
Sbjct:    76 TEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISV 124

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|J9NT64 UBE2G1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 63/109 (57%), Positives = 84/109 (77%)

Query:    16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
             +L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +TFP +YP+ PP ++F 
Sbjct:    16 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFI 75

Query:    76 SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
             +E+WHPNV  +G VCISILH PG+D  GYE   ERW P+HT  ++  S+
Sbjct:    76 TEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISV 124

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34477	UBC7_CAEEL	6, ., 3, ., 2, ., 1, 9	0.5	0.8538	0.8902	yes	no
P25868	UBC7_WHEAT	6, ., 3, ., 2, ., 1, 9	0.7788	0.6023	0.6130	N/A	no
P42747	UBC14_ARATH	6, ., 3, ., 2, ., 1, 9	0.8548	0.7251	0.7425	yes	no
Q9Y818	UBC15_SCHPO	6, ., 3, ., 2, ., 1, 9	0.6048	0.7251	0.7425	yes	no
Q02159	UBC7_YEAST	6, ., 3, ., 2, ., 1, 9	0.4569	0.8362	0.8666	yes	no
P62255	UB2G1_RAT	6, ., 3, ., 2, ., 1, 9	0.5645	0.7251	0.7294	yes	no
P62254	UB2G1_MOUSE	6, ., 3, ., 2, ., 1, 9	0.5645	0.7251	0.7294	yes	no
P62253	UB2G1_HUMAN	6, ., 3, ., 2, ., 1, 9	0.5645	0.7251	0.7294	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	0.991
3rd Layer	6.3.2	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	6e-47
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	4e-44
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	5e-44
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	2e-42
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	8e-24
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	4e-14

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  150 bits (380), Expect = 6e-47
 Identities = 54/120 (45%), Positives = 73/120 (60%), Gaps = 13/120 (10%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           M+   A   L K+LK L K+P  G SAG VD+ N+F W  +I GPPDT YEGG F   + 
Sbjct: 1   MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLE 60

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           FP++YP  PP VRFT++++HPNV P G VC+ IL              +RW+PV+T  ++
Sbjct: 61  FPEDYPFKPPKVRFTTKIFHPNVDPSGNVCLDILK-------------DRWSPVYTLETI 107

Length = 153

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  141 bits (359), Expect = 4e-44
 Identities = 52/115 (45%), Positives = 71/115 (61%), Gaps = 13/115 (11%)

Query: 10  LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
           LQK+LK+L K+P  G SA  VD+ N+FEW V+IIGP  T YEGG F   + FP++YP  P
Sbjct: 2   LQKELKELLKDPPPGISAFPVDD-NLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFKP 60

Query: 70  PTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           P V+FT++++HPNV P G++C+ IL              E W+P  T   V  S+
Sbjct: 61  PKVKFTTKIYHPNVDPSGEICLDILK------------DENWSPALTIEQVLLSI 103

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  141 bits (359), Expect = 5e-44
 Identities = 54/116 (46%), Positives = 72/116 (62%), Gaps = 13/116 (11%)

Query: 9   LLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVS 68
            LQK+LKDL K+P  G SA  V+E N+ EW  +I GPPDT YEGG F   + FP++YP  
Sbjct: 3   RLQKELKDLKKDPPSGISAEPVEE-NLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFK 61

Query: 69  PPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           PP VRF ++++HPNV  +GK+C+SIL             T  W+P +T  +V  SL
Sbjct: 62  PPKVRFVTKIYHPNVDENGKICLSILK------------THGWSPAYTLRTVLLSL 105

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score =  138 bits (349), Expect = 2e-42
 Identities = 48/115 (41%), Positives = 71/115 (61%), Gaps = 12/115 (10%)

Query: 10  LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
           L K+LK+L K+P  GF+A  VD+ N+ EW+ +I+GPP T YEGG F   + FP++YP  P
Sbjct: 2   LLKELKELRKDPPPGFTAYPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPFKP 61

Query: 70  PTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           P V+F ++++HPNV   G++C+ IL              E+W+P  T  +V  SL
Sbjct: 62  PKVKFITKIYHPNVDSSGEICLDILKQ------------EKWSPALTLETVLLSL 104

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 91.0 bits (225), Expect = 8e-24
 Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 14/120 (11%)

Query: 6   ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNY 65
           A+  +QK+ KDL K+P    SAG  DE N+F W+ SIIGP D+ Y GG F   + FP +Y
Sbjct: 2   ATKRIQKEHKDLLKDPPSNCSAGPSDE-NLFRWTASIIGPSDSPYAGGVFFLSILFPPDY 60

Query: 66  PVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           P  PP V+FT++++HPN+  +G +C+ IL              ++W+P  T + V  S+S
Sbjct: 61  PFKPPKVQFTTKIYHPNINSNGSICLDILR-------------DQWSPALTVSKVLLSIS 107

Length = 147

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 65.6 bits (160), Expect = 4e-14
 Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 10 LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
          ++K+ ++L  +P  G  A   D  N   + + + GP  T YEGG++   +  P+ YP+ P
Sbjct: 7  IEKETQNLANDPPPGIKAEP-DPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEP 65

Query: 70 PTVRFTSEMWHPNVYPDGKVCISIL 94
          P VRF ++++HPN+   G++C+ IL
Sbjct: 66 PKVRFLTKIYHPNIDKLGRICLDIL 90

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	100.0
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	100.0
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	99.98
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	99.97
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	99.96
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	99.96
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	99.95
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	99.92
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.83
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	99.79
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.72
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	99.6
KOG0897	122	consensus Predicted ubiquitin-conjugating enzyme [	99.11
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	98.69
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	98.36
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	97.84
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	97.64
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	97.19
KOG3357	167	consensus Uncharacterized conserved protein [Funct	97.16
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	96.54
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	95.89
smart00591	107	RWD domain in RING finger and WD repeat containing	95.77
PF09765	291	WD-3: WD-repeat region; InterPro: IPR019162 This e	87.77
KOG4018	215	consensus Uncharacterized conserved protein, conta	82.42
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	80.63

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-46  Score=280.74  Aligned_cols=142  Identities=42%  Similarity=0.786  Sum_probs=134.0

Q ss_pred             CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCcc
Q 030794            1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH   80 (171)
Q Consensus         1 Ma~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   80 (171)
                      |++..|.+||++|+++|++++++++++.+.+++|+++|+++|.||++||||||+|++.|.||++||++||+|+|+++|||
T Consensus         1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H   80 (153)
T COG5078           1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH   80 (153)
T ss_pred             CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence            67666999999999999999999999999866699999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHH
Q 030794           81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCF  150 (171)
Q Consensus        81 pnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~  150 (171)
                      |||+.+|.|||++|+             ++|+|+++|++||++|+++|.+          ++.++.++..+|.+++++++
T Consensus        81 PNV~~~G~vCLdIL~-------------~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~  147 (153)
T COG5078          81 PNVDPSGNVCLDILK-------------DRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWV  147 (153)
T ss_pred             CCcCCCCCChhHHHh-------------CCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHH
Confidence            999999999999997             9999999999999999999977          44489999999999999999


Q ss_pred             Hhhhh
Q 030794          151 LSVHS  155 (171)
Q Consensus       151 ~~~~~  155 (171)
                      +.++.
T Consensus       148 ~~~~~  152 (153)
T COG5078         148 KKYAE  152 (153)
T ss_pred             HHhcc
Confidence            98764

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-45  Score=271.66  Aligned_cols=136  Identities=35%  Similarity=0.703  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCC
Q 030794            6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP   85 (171)
Q Consensus         6 a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~   85 (171)
                      +.+||+||+++|.+++++|+++.+. ++|++.|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+.
T Consensus         2 a~~RI~kE~~~l~~dp~~~~~~~~~-~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~   80 (148)
T KOG0417|consen    2 ASKRIIKELQDLLRDPPPGCSAGPV-GDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS   80 (148)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccCCC-CCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence            3569999999999999999999985 999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCc----------HHHhhccchhhHHHHHHHHHhhhh
Q 030794           86 DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY----------AWFLMNAGYEYGNTLHSCFLSVHS  155 (171)
Q Consensus        86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  155 (171)
                      .|+||+++|+             +.|+|+++|++||++|+++|.++          +.++..+..+|.++||++++++|.
T Consensus        81 ~G~IclDILk-------------~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~  147 (148)
T KOG0417|consen   81 NGRICLDILK-------------DQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM  147 (148)
T ss_pred             cccchHHhhh-------------ccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            9999999998             88999999999999999999873          337888999999999999999885

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-43  Score=260.14  Aligned_cols=157  Identities=59%  Similarity=1.049  Sum_probs=148.4

Q ss_pred             CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCcc
Q 030794            1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH   80 (171)
Q Consensus         1 Ma~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   80 (171)
                      |+++++..-|+++|++|++++..|+++...|++|+++|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.|.+||
T Consensus         1 m~~~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwH   80 (171)
T KOG0425|consen    1 MTSSQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWH   80 (171)
T ss_pred             CccchhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcC
Confidence            78888999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHH
Q 030794           81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCF  150 (171)
Q Consensus        81 pnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~  150 (171)
                      ||||++|++|+++|.+++.++++.+.-++.|+|.+|+++||++|.+||.+          ++..++++..+|.++++.|+
T Consensus        81 PNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~v  160 (171)
T KOG0425|consen   81 PNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCV  160 (171)
T ss_pred             CCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999955          44578899999999999999


Q ss_pred             Hhhhhhh
Q 030794          151 LSVHSVA  157 (171)
Q Consensus       151 ~~~~~~~  157 (171)
                      ......+
T Consensus       161 r~s~e~~  167 (171)
T KOG0425|consen  161 RRSQEEA  167 (171)
T ss_pred             HHHHHhh
Confidence            8765443

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-43  Score=254.33  Aligned_cols=136  Identities=38%  Similarity=0.732  Sum_probs=129.7

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCc
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN   82 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   82 (171)
                      +++|.+||.+|+++|+++++.||+..|. ++|+++|.+.|+||.+|||+||.|++.|+|.++||.+||.|+|++.+||||
T Consensus         2 stpArrrLmrDfkrlqedpp~gisa~P~-~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN   80 (152)
T KOG0419|consen    2 STPARRRLMRDFKRLQEDPPAGISAAPV-ENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN   80 (152)
T ss_pred             CchHHHHHHHHHHHhhcCCCCCccCCCC-ccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence            4899999999999999999999999998 999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHh
Q 030794           83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      ||.+|.+|+++|.             .+|+|.|++.+||.+||+||.+          ++.+++++..+|.+++++.+.+
T Consensus        81 vya~G~iClDiLq-------------NrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veq  147 (152)
T KOG0419|consen   81 VYADGSICLDILQ-------------NRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQ  147 (152)
T ss_pred             cCCCCcchHHHHh-------------cCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHH
Confidence            9999999999997             8999999999999999999966          5558999999999999988765

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=2.3e-41  Score=255.08  Aligned_cols=136  Identities=26%  Similarity=0.518  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCC
Q 030794            6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP   85 (171)
Q Consensus         6 a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~   85 (171)
                      +.+||++|+++|.+++++|+.+.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus         3 ~~kRl~~E~~~l~~~~~~~i~~~~~-~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~   81 (152)
T PTZ00390          3 ISKRIEKETQNLANDPPPGIKAEPD-PGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK   81 (152)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEC-CCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC
Confidence            5799999999999999999999986 789999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhhhh
Q 030794           86 DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSVHS  155 (171)
Q Consensus        86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  155 (171)
                      +|.||+++|.             ++|+|++||.+||++|+++|.+          ++.++.++..+|.++++++++++|.
T Consensus        82 ~G~iCl~iL~-------------~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~  148 (152)
T PTZ00390         82 LGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK  148 (152)
T ss_pred             CCeEECccCc-------------ccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence            9999999996             8999999999999999999976          4447888999999999999998876

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-41  Score=243.17  Aligned_cols=151  Identities=45%  Similarity=0.829  Sum_probs=141.0

Q ss_pred             CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCcc
Q 030794            1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH   80 (171)
Q Consensus         1 Ma~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   80 (171)
                      || ..|.|||.+||++|..++++||.+.|.+++|+++|.+.|.||++|+|+||+|..++.||.|||.+||+++|.-.+||
T Consensus         1 m~-~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fH   79 (165)
T KOG0426|consen    1 MA-GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFH   79 (165)
T ss_pred             Cc-hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeeccccc
Confidence            55 78999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHH
Q 030794           81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCF  150 (171)
Q Consensus        81 pnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~  150 (171)
                      ||||++|++|+++|..++.+|++++.+.+.|+|.++++.||+++.++|..          +.-+-++++.+|.+.++..+
T Consensus        80 PNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lv  159 (165)
T KOG0426|consen   80 PNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLV  159 (165)
T ss_pred             CcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999966          33367777888888777766


Q ss_pred             Hh
Q 030794          151 LS  152 (171)
Q Consensus       151 ~~  152 (171)
                      .+
T Consensus       160 rK  161 (165)
T KOG0426|consen  160 RK  161 (165)
T ss_pred             HH
Confidence            54

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=4.4e-41  Score=252.41  Aligned_cols=134  Identities=36%  Similarity=0.700  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCCC
Q 030794            7 SLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPD   86 (171)
Q Consensus         7 ~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~   86 (171)
                      .+||++|+++|++++++++++.+. ++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.+
T Consensus         3 ~~Rl~kE~~~l~~~~~~~~~~~~~-~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~   81 (147)
T PLN00172          3 TKRIQKEHKDLLKDPPSNCSAGPS-DENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN   81 (147)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEEC-CCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence            589999999999999999999986 8899999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhhh
Q 030794           87 GKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSVH  154 (171)
Q Consensus        87 G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~~  154 (171)
                      |.||+++|.             ++|+|+++|++||.+|+++|.+          ++.++.++..+|.++++++++++|
T Consensus        82 G~iCl~il~-------------~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a  146 (147)
T PLN00172         82 GSICLDILR-------------DQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA  146 (147)
T ss_pred             CEEEcccCc-------------CCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence            999999996             8999999999999999999976          344788899999999999998765

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-38  Score=238.91  Aligned_cols=140  Identities=29%  Similarity=0.517  Sum_probs=130.1

Q ss_pred             CchHHHHHHHHHHHHHHhhCC---CCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecC
Q 030794            1 MAKSQASLLLQKQLKDLCKNP---VDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE   77 (171)
Q Consensus         1 Ma~~~a~~Rl~~El~~l~~~~---~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   77 (171)
                      |+ + +.+||++|.+++.+++   ..||.++.. .+|+.+..+.|.||++||||||.|.++|++|++||++||+|+|.|+
T Consensus         1 m~-~-~~~ri~~e~k~v~~~~eisq~~I~ve~v-n~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~Tk   77 (200)
T KOG0418|consen    1 MS-N-AFKRINREQKEVLDDPEISQAGIIVEMV-NENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITK   77 (200)
T ss_pred             Cc-c-HHHHHHHHHHHhccChhhhhcceEEEEc-cCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeee
Confidence            55 4 9999999999999998   689999998 7899999999999999999999999999999999999999999999


Q ss_pred             CccCccCC-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH----------HhhccchhhHHHH
Q 030794           78 MWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW----------FLMNAGYEYGNTL  146 (171)
Q Consensus        78 i~HpnV~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~----------~~~~~~~~~~~~~  146 (171)
                      ||||||++ +|.|||++|.             +.|++++||+++|++||++|.++++          ++.++..-|.+++
T Consensus        78 IwHPnVSs~tGaICLDilk-------------d~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TA  144 (200)
T KOG0418|consen   78 IWHPNVSSQTGAICLDILK-------------DQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTA  144 (200)
T ss_pred             eecCCCCcccccchhhhhh-------------cccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHH
Confidence            99999988 9999999997             9999999999999999999977444          6777888899999


Q ss_pred             HHHHHhhhhh
Q 030794          147 HSCFLSVHSV  156 (171)
Q Consensus       147 ~~~~~~~~~~  156 (171)
                      +.|...+|..
T Consensus       145 r~WT~~fA~~  154 (200)
T KOG0418|consen  145 RYWTTEFAGG  154 (200)
T ss_pred             HHHHHHHhCC
Confidence            9999998874

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.7e-38  Score=227.11  Aligned_cols=142  Identities=30%  Similarity=0.536  Sum_probs=129.5

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCC----CCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCC
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDE----SNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM   78 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~----~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   78 (171)
                      |+.+..||++|-+.+.++.+-|+++.|...    .|++.|.|.|.|+++|+||||.|.+.+.||++||.+||+++|.+++
T Consensus         2 s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl   81 (158)
T KOG0424|consen    2 SGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPL   81 (158)
T ss_pred             cchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCC
Confidence            477899999999999999999999998733    4799999999999999999999999999999999999999999999


Q ss_pred             ccCccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH----------HhhccchhhHHHHHH
Q 030794           79 WHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW----------FLMNAGYEYGNTLHS  148 (171)
Q Consensus        79 ~HpnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~----------~~~~~~~~~~~~~~~  148 (171)
                      ||||||+.|.|||++|..           ..+|+|+.||.+||..||+||.+++.          .|..+..+|.+++|+
T Consensus        82 ~HPNVypsgtVcLsiL~e-----------~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~  150 (158)
T KOG0424|consen   82 FHPNVYPSGTVCLSILNE-----------EKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRA  150 (158)
T ss_pred             cCCCcCCCCcEehhhhcc-----------ccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHH
Confidence            999999999999999973           24599999999999999999966322          688899999999999


Q ss_pred             HHHhhhh
Q 030794          149 CFLSVHS  155 (171)
Q Consensus       149 ~~~~~~~  155 (171)
                      +++.++.
T Consensus       151 qak~~a~  157 (158)
T KOG0424|consen  151 QAKEYAK  157 (158)
T ss_pred             HHHHhcc
Confidence            9988764

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=2.1e-37  Score=230.36  Aligned_cols=129  Identities=40%  Similarity=0.771  Sum_probs=112.7

Q ss_pred             HHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCCCCc
Q 030794            9 LLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGK   88 (171)
Q Consensus         9 Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~   88 (171)
                      ||++|+++|+++++.|+.+.+.+++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+|+
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~   80 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR   80 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred             CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999984459999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHH
Q 030794           89 VCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSC  149 (171)
Q Consensus        89 iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~  149 (171)
                      ||+++|.            .+.|+|+++|.+||.+|+++|.+          ++.++.++..+|.+++++|
T Consensus        81 icl~~l~------------~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~  139 (140)
T PF00179_consen   81 ICLDILN------------PESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREW  139 (140)
T ss_dssp             BGHGGGT------------TTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             chhhhhh------------cccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHc
Confidence            9999997            25699999999999999999965          3336777777788777776

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=100.00  E-value=7.5e-36  Score=222.33  Aligned_cols=129  Identities=43%  Similarity=0.748  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCCCC
Q 030794            8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDG   87 (171)
Q Consensus         8 ~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G   87 (171)
                      +||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+.+|
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~~~-~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G   80 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAEPV-EENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG   80 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEEEC-CCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence            79999999999999999999996 77999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCc----------HHHhhccchhhHHHHHHH
Q 030794           88 KVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY----------AWFLMNAGYEYGNTLHSC  149 (171)
Q Consensus        88 ~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~----------~~~~~~~~~~~~~~~~~~  149 (171)
                      .||+++|..            ++|+|+++|.+||.+|+++|.++          +.++.++..+|.+++++|
T Consensus        81 ~icl~~l~~------------~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~  140 (141)
T cd00195          81 KICLSILKT------------HGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREW  140 (141)
T ss_pred             CCchhhcCC------------CCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHh
Confidence            999999971            35999999999999999999762          224555555555555554

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=100.00  E-value=4.2e-35  Score=219.23  Aligned_cols=134  Identities=37%  Similarity=0.708  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCCCC
Q 030794            8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDG   87 (171)
Q Consensus         8 ~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G   87 (171)
                      +||++|++++++++++|+.+.+.+++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.++++||||+++|
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G   80 (145)
T smart00212        1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG   80 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence            59999999999999999999987445999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhh
Q 030794           88 KVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSV  153 (171)
Q Consensus        88 ~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~  153 (171)
                      .||++.|.            .++|+|+++|.+||.+|+++|.+          ++.++.++...|.++++.+++++
T Consensus        81 ~icl~~l~------------~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~  144 (145)
T smart00212       81 EICLDILK------------QEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKY  144 (145)
T ss_pred             CEehhhcC------------CCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence            99999995            26899999999999999999966          34477888888989998888764

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-35  Score=215.88  Aligned_cols=135  Identities=33%  Similarity=0.572  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCcc
Q 030794            4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV   83 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   83 (171)
                      ....|||++||..|+....+||++.|. .+|++.|..+|.||++|+|+|..|++.+.||.+||++||.|.|+|+.|||||
T Consensus        28 ~~V~KRLq~ELm~Lmms~~~gISAFP~-~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV  106 (175)
T KOG0421|consen   28 HSVTKRLQSELMGLMMSNTPGISAFPE-SDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV  106 (175)
T ss_pred             chHHHHHHHHHHHHHhcCCCCcccCcC-cCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence            457899999999999999999999996 8899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCc---------HHHhhccchhhHHHHHHHHHh
Q 030794           84 YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY---------AWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~---------~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      +..|.|||++|.             +.|+..|.+++||++||++|-++         +..+-.+..+|.+.+.++.++
T Consensus       107 D~~GnIcLDILk-------------dKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~d~~eykk~l~~~Y~~  171 (175)
T KOG0421|consen  107 DLSGNICLDILK-------------DKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWSDQEEYKKYLEALYKE  171 (175)
T ss_pred             cccccchHHHHH-------------HHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhcCHHHHHHHHHHHhhc
Confidence            999999999997             99999999999999999999442         224555778898888887765

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-32  Score=210.12  Aligned_cols=120  Identities=28%  Similarity=0.574  Sum_probs=111.1

Q ss_pred             CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCcc
Q 030794            1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH   80 (171)
Q Consensus         1 Ma~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   80 (171)
                      ||+..|.+||+|||+.|+++|+++|.+.|. ++|+.+||.+|.||++|||+||.|+.++.||++||++||.|++.||-  
T Consensus         1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~-p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPN--   77 (244)
T KOG0894|consen    1 MASKAAVKRLQKEYRALCKDPVPYIVARPN-PNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPN--   77 (244)
T ss_pred             CcchHHHHHHHHHHHHHHhCCchhhccCCC-ccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCC--
Confidence            899999999999999999999999999997 99999999999999999999999999999999999999999999982  


Q ss_pred             CccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH
Q 030794           81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW  133 (171)
Q Consensus        81 pnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~  133 (171)
                      ..+-.+-++||++.+          +|.+.|+|+++|.+||..|.++|.+..+
T Consensus        78 GRFktntRLCLSiSD----------fHPdsWNP~WsVStILtGLlSFM~e~~p  120 (244)
T KOG0894|consen   78 GRFKTNTRLCLSISD----------FHPDSWNPGWSVSTILTGLLSFMTEDSP  120 (244)
T ss_pred             CceecCceEEEeccc----------cCcCcCCCcccHHHHHHHHHHHHhcCCC
Confidence            344456799999987          7889999999999999999999977433

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=3.5e-32  Score=197.14  Aligned_cols=137  Identities=28%  Similarity=0.530  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCC
Q 030794            6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP   85 (171)
Q Consensus         6 a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~   85 (171)
                      +.+||+|||.+|+++....+.-...+++|++.|++.|. |++-||..|.|.++|.||.+|||+||+|.|.|.||||||++
T Consensus         3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe   81 (153)
T KOG0422|consen    3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE   81 (153)
T ss_pred             hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence            78999999999999998766554456889999999999 89999999999999999999999999999999999999999


Q ss_pred             CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcH----------HHhhccchhhHHHHHHHHHhhhh
Q 030794           86 DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYA----------WFLMNAGYEYGNTLHSCFLSVHS  155 (171)
Q Consensus        86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  155 (171)
                      .|.+|+.++.            .+.|.|+.+.++||++|.+++-+++          ..|.++.-.|.+++.+++++++.
T Consensus        82 ~gqvClPiis------------~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e  149 (153)
T KOG0422|consen   82 KGQVCLPIIS------------AENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE  149 (153)
T ss_pred             CCceeeeeee------------cccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence            9999999997            4999999999999999999996633          36888888899999999888753

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.2e-30  Score=186.11  Aligned_cols=115  Identities=30%  Similarity=0.645  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCC-ccCc
Q 030794            4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM-WHPN   82 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpn   82 (171)
                      ..|++||||||.+++.+++.|+....  .+|+..|.+-+.|.+||.|+|..|.++++||+.||++.|.|.|+.++ .||+
T Consensus        14 ~~at~RLqKEl~e~q~~pP~G~~~~v--~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPH   91 (161)
T KOG0427|consen   14 KIATNRLQKELSEWQNNPPTGFKHRV--TDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPH   91 (161)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcceeec--ccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCc
Confidence            57899999999999999999999984  68999999999999999999999999999999999999999999996 8999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH
Q 030794           83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW  133 (171)
Q Consensus        83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~  133 (171)
                      ||+||-|||++|.             +.|+|+.++.+|+++|.+||.+-..
T Consensus        92 iYSNGHICL~iL~-------------d~WsPAmsv~SvClSIlSMLSSs~e  129 (161)
T KOG0427|consen   92 IYSNGHICLDILY-------------DSWSPAMSVQSVCLSILSMLSSSKE  129 (161)
T ss_pred             eecCCeEEEEeec-------------ccCCcchhhHHHHHHHHHHHccCcc
Confidence            9999999999997             9999999999999999999977444

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.2e-29  Score=189.65  Aligned_cols=137  Identities=22%  Similarity=0.566  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccC
Q 030794            5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVY   84 (171)
Q Consensus         5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~   84 (171)
                      ...||+..|+..|...   +..+... ++++.++++.+.||.+|||+||+++++|.+|++||++.|.|.|+++||||||+
T Consensus         3 ~~~rRid~Dv~KL~~s---~yeV~~i-nd~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNID   78 (189)
T KOG0416|consen    3 SGKRRIDTDVMKLLMS---DYEVTII-NDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNID   78 (189)
T ss_pred             CcccchhhHHHHHHhc---CCeEEEe-cCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCch
Confidence            5679999999988754   3556665 77899999999999999999999999999999999999999999999999999


Q ss_pred             C-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC-----------cHHHhhccchhhHHHHHHHHHh
Q 030794           85 P-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN-----------YAWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        85 ~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~-----------~~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      . +|.|||++++             ..|+|.|.|..|+....-.|+.           ++.++..+..+|.+++++|+++
T Consensus        79 e~SGsVCLDViN-------------QtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~k  145 (189)
T KOG0416|consen   79 EASGSVCLDVIN-------------QTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKK  145 (189)
T ss_pred             hccCccHHHHHh-------------hhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHH
Confidence            8 9999999998             8899999999999888777755           5558888999999999999999


Q ss_pred             hhhhhh
Q 030794          153 VHSVAC  158 (171)
Q Consensus       153 ~~~~~~  158 (171)
                      +|....
T Consensus       146 YA~~~~  151 (189)
T KOG0416|consen  146 YATPEA  151 (189)
T ss_pred             hcChhh
Confidence            998764

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=6.6e-29  Score=185.90  Aligned_cols=132  Identities=31%  Similarity=0.537  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecC-CCCce--EEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCcc
Q 030794            4 SQASLLLQKQLKDLCKNPVDGFSAGLVD-ESNVF--EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH   80 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~-~~n~~--~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   80 (171)
                      +.+..||++|+.++  +.+++++....+ .++..  +..++|. |+++.|+||.|.|.+.+|+.||+.||+|.|+|+|||
T Consensus        27 s~a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~H  103 (184)
T KOG0420|consen   27 SAALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYH  103 (184)
T ss_pred             cHHHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecccc
Confidence            56888999998888  556666543222 33443  5999998 999999999999999999999999999999999999


Q ss_pred             CccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHH
Q 030794           81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCF  150 (171)
Q Consensus        81 pnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~  150 (171)
                      |||+.+|.|||++|+             ++|+|+.+|.+|+..|+.+|.+          |+.++..+...|..++|...
T Consensus       104 PNId~~GnVCLnILR-------------edW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m  170 (184)
T KOG0420|consen  104 PNIDLDGNVCLNILR-------------EDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAM  170 (184)
T ss_pred             CCcCCcchHHHHHHH-------------hcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHH
Confidence            999999999999998             8899999999999999999976          44466677777777777654


Q ss_pred             H
Q 030794          151 L  151 (171)
Q Consensus       151 ~  151 (171)
                      .
T Consensus       171 ~  171 (184)
T KOG0420|consen  171 S  171 (184)
T ss_pred             h
Confidence            3

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=7.3e-29  Score=185.89  Aligned_cols=137  Identities=25%  Similarity=0.436  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCC
Q 030794            6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP   85 (171)
Q Consensus         6 a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~   85 (171)
                      .++.+.+|++.+...+++||.+.+. +.|.....+.|-||.+|||++|+|++.+.+..|||++||+-.|+|+||||||-.
T Consensus        11 vik~~~kEl~~l~~~PPdGIKV~~N-eeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaa   89 (223)
T KOG0423|consen   11 VIKQLAKELKSLDESPPDGIKVVVN-EEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAA   89 (223)
T ss_pred             HHHHHHHHHHhcccCCCCceEEecC-hHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCccc
Confidence            5788999999999999999999985 889999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH----------HhhccchhhHHHHHHHHHhhhh
Q 030794           86 DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW----------FLMNAGYEYGNTLHSCFLSVHS  155 (171)
Q Consensus        86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  155 (171)
                      ||.||...|.             .+|+|+..|+.||..|+.+|..+.+          ++.++-++|.+++|.+..-+++
T Consensus        90 NGEICVNtLK-------------kDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~  156 (223)
T KOG0423|consen   90 NGEICVNTLK-------------KDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAK  156 (223)
T ss_pred             Cceehhhhhh-------------cccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence            9999999997             8999999999999999999977444          5667778888888888887776


Q ss_pred             h
Q 030794          156 V  156 (171)
Q Consensus       156 ~  156 (171)
                      .
T Consensus       157 p  157 (223)
T KOG0423|consen  157 P  157 (223)
T ss_pred             C
Confidence            5

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=4.9e-25  Score=173.54  Aligned_cols=115  Identities=30%  Similarity=0.588  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCcc
Q 030794            4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV   83 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   83 (171)
                      +++.|||.||.++|+ +|.+.+.+.|. ++|+|+|+++|.||.+|-|+||+||.+|.||.+||++||.+-.+|+  +..+
T Consensus        10 npaVkRlmkEa~El~-~Ptd~yha~pl-EdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRF   85 (314)
T KOG0428|consen   10 NPAVKRLMKEAAELK-DPTDHYHAQPL-EDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRF   85 (314)
T ss_pred             CHHHHHHHHHHHHhc-Cchhhhhhccc-hhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCce
Confidence            789999999999998 88888889998 9999999999999999999999999999999999999999999988  2445


Q ss_pred             CCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcH
Q 030794           84 YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYA  132 (171)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~  132 (171)
                      .-|-+|||++.+          +|.+.|.|+++|++.|+.|..+|-+.+
T Consensus        86 E~nkKiCLSISg----------yHPEtWqPSWSiRTALlAlIgFmPt~p  124 (314)
T KOG0428|consen   86 EVNKKICLSISG----------YHPETWQPSWSIRTALLALIGFMPTKP  124 (314)
T ss_pred             eeCceEEEEecC----------CCccccCcchhHHHHHHHHHccccCCC
Confidence            557789999986          778999999999999999999996533

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=6.8e-21  Score=174.07  Aligned_cols=133  Identities=32%  Similarity=0.475  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecC--CccCcc
Q 030794            6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE--MWHPNV   83 (171)
Q Consensus         6 a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HpnV   83 (171)
                      ..+..+.|++.|..+.+.||.+... ++.|....+.|.||++|||.+|+|.|++.||++||..||.|...+.  .++||.
T Consensus       852 ~~~~~~~~~~~~~~~~~~~~~vr~~-e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnl  930 (1101)
T KOG0895|consen  852 WAKKVQTEWKILPLSLPSGIFVRAY-EDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNL  930 (1101)
T ss_pred             HHHHHHHHHHhhhccCCCceEEEec-hHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccc
Confidence            3455667888888899999999985 9999999999999999999999999999999999999999999987  689999


Q ss_pred             CCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHHHhhccchhhHHH
Q 030794           84 YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLMNAGYEYGNT  145 (171)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~~~~~~~~~~~~~  145 (171)
                      |.+|++|+++|+.+.+-+.      +.|+|+-++.+||.+||.|++.+.+.||+.|++-.+.
T Consensus       931 y~~g~vc~s~l~tw~g~~~------e~w~~~s~~lq~l~s~q~l~l~~~py~ne~gy~~~~g  986 (1101)
T KOG0895|consen  931 YEDGKVCLSLLNTWHGRGN------EVWNPSSSILQVLVSIQGLVLNEEPYFNEAGYEKQRG  986 (1101)
T ss_pred             ccccceehhhhccccCCCc------cccCcchhHHHHHHHhhhhhcccccccCccccccccc
Confidence            9999999999987766555      8999999999999999999999999899988765443

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.3e-18  Score=135.33  Aligned_cols=137  Identities=20%  Similarity=0.367  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCC--CCCeeEEecCCccCccCC
Q 030794            8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPV--SPPTVRFTSEMWHPNVYP   85 (171)
Q Consensus         8 ~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~HpnV~~   85 (171)
                      .-|..|+..+.+.+.+||++.|. ..|-+.|.++|+ ...+.|.||+|+|+|.+|++||.  .-|+|.|.++++||+|.+
T Consensus        22 y~llAEf~lV~~ekL~gIyviPS-yan~l~WFGViF-vr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp   99 (258)
T KOG0429|consen   22 YALLAEFVLVCREKLDGIYVIPS-YANKLLWFGVIF-VRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICP   99 (258)
T ss_pred             HHHHHHHHHHHhccCCceEEccc-ccccceEEEEEE-EecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCC
Confidence            35677888889999999999997 889999999999 57889999999999999999994  679999999999999988


Q ss_pred             -CCceeeccCCCCCCCCCCCCCCCCCCCccC-cHHHHHHHHHHhhcC------------cHHHhhccchhhHHHHHHHHH
Q 030794           86 -DGKVCISILHPPGDDPNGYELATERWTPVH-TAASVWRSLSPGVLN------------YAWFLMNAGYEYGNTLHSCFL  151 (171)
Q Consensus        86 -~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~-~l~~il~~i~~ll~~------------~~~~~~~~~~~~~~~~~~~~~  151 (171)
                       ++.+|+.-..             ..|+-.. .|..||..||..|.+            ++.++.++..+|.+++++|++
T Consensus       100 ~skeLdl~raf-------------~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk  166 (258)
T KOG0429|consen  100 KSKELDLNRAF-------------PEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVK  166 (258)
T ss_pred             CccceeHhhhh-------------hhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHH
Confidence             8999998765             4599966 999999999999965            556899999999999999999


Q ss_pred             hhhhhhhh
Q 030794          152 SVHSVACH  159 (171)
Q Consensus       152 ~~~~~~~~  159 (171)
                      ...+.-++
T Consensus       167 ~sr~~iyD  174 (258)
T KOG0429|consen  167 ASRSMIYD  174 (258)
T ss_pred             HHHHHhcC
Confidence            87775544

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=2.9e-17  Score=150.56  Aligned_cols=128  Identities=34%  Similarity=0.530  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecC---CccC
Q 030794            5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE---MWHP   81 (171)
Q Consensus         5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~Hp   81 (171)
                      -..+|+++|++.+.++.++|+.+.+. +.+|...++.|.||.++||++|+|.|+|.||..||..||.|.+++.   .+.|
T Consensus       282 ~~skrv~ke~~llskdlpEgifvrp~-e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nP  360 (1101)
T KOG0895|consen  282 NWSKKVAKELKLLSKDLPEGIFVRPD-EGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNP  360 (1101)
T ss_pred             hhHHHHHHHhhhhcccCCCCcccccc-ccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecC
Confidence            45789999999999999999999986 9999999999999999999999999999999999999999999998   5899


Q ss_pred             ccCCCCceeeccCCCCCCCCCCCCCCCCCCCcc-CcHHHHHHHHHHhhcCcHHHhhccc
Q 030794           82 NVYPDGKVCISILHPPGDDPNGYELATERWTPV-HTAASVWRSLSPGVLNYAWFLMNAG  139 (171)
Q Consensus        82 nV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~-~~l~~il~~i~~ll~~~~~~~~~~~  139 (171)
                      |.|.+|+||+++|..+.+-.+      +.|+|. .+|.++|..||.++....+.+++.+
T Consensus       361 NlYn~GKVcLslLgTwtg~~~------e~wtp~~~sl~qvL~sIQ~Li~~e~Py~ne~g  413 (1101)
T KOG0895|consen  361 NLYNDGKVCLSLLGTWTGSRR------EKWTPNGSSLLQVLESIQGLILNEEPYFNEPG  413 (1101)
T ss_pred             CcccCceEEeeeeeecccccc------cCCCccccchhhhhhhhhhhhcccCccccccc
Confidence            999999999999976654433      899998 7999999999999987644444443

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=2.9e-15  Score=108.46  Aligned_cols=122  Identities=29%  Similarity=0.452  Sum_probs=98.8

Q ss_pred             CchHHHHHHHHHHHHHHhhCCCCC-eEEEecCCCCce--EEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecC
Q 030794            1 MAKSQASLLLQKQLKDLCKNPVDG-FSAGLVDESNVF--EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE   77 (171)
Q Consensus         1 Ma~~~a~~Rl~~El~~l~~~~~~~-i~~~~~~~~n~~--~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   77 (171)
                      |+..++..||.+|+.+=++...++ ++....|.+|+.  .|..+|.||+.|+||+.+|.++|...++||..||+|+|.++
T Consensus         1 ~~~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tk   80 (138)
T KOG0896|consen    1 MVKVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTK   80 (138)
T ss_pred             CCccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEE
Confidence            555678899999999877766655 555554455544  89999999999999999999999999999999999999999


Q ss_pred             CccCccCC-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH
Q 030794           78 MWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW  133 (171)
Q Consensus        78 i~HpnV~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~  133 (171)
                      +--+-|.. +|.+.-..+..           ..+|+-.|+++.+|..++..++...+
T Consensus        81 inm~gvn~~~g~Vd~~~i~~-----------L~~W~~~y~~~~vl~~lr~~m~~~eN  126 (138)
T KOG0896|consen   81 INMNGVNSSNGVVDPRDITV-----------LARWQRSYSIKMVLGQLRKEMMSKEN  126 (138)
T ss_pred             eeecccccCCCccCccccch-----------hhcccccchhhHHHHhhhHHHHHHHh
Confidence            97777766 67764433221           27999999999999999988776555

>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=9.5e-11  Score=82.82  Aligned_cols=100  Identities=16%  Similarity=0.302  Sum_probs=76.6

Q ss_pred             EEEEEEcCCCCCCCCCeeEEecCCc-cCccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH
Q 030794           55 FNAIMTFPDNYPVSPPTVRFTSEMW-HPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW  133 (171)
Q Consensus        55 f~~~i~fp~~YP~~pP~v~f~t~i~-HpnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~  133 (171)
                      .-+.+.|+++||+.||++|.+.|+- ..-|-.+|.||+.+|+.            ++|+.+|+|+.++++|-..+.....
T Consensus        13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~------------qgwssay~Ve~vi~qiaatlVkG~~   80 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTK------------QGWSSAYEVERVIMQIAATLVKGGA   80 (122)
T ss_pred             eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHcc------------ccccchhhHHHHHHHHHHHhhccce
Confidence            3567789999999999999998853 34566789999999984            8999999999999999999865332


Q ss_pred             HhhccchhhHH--HHHHHHHhhhhhhhhhHHHHhcccCCC
Q 030794          134 FLMNAGYEYGN--TLHSCFLSVHSVACHLMAVVIGSESWW  171 (171)
Q Consensus       134 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~  171 (171)
                           +.++..  ....+..+.|...+..+.-.++..+|.
T Consensus        81 -----ri~~~a~k~sk~~s~~qa~~sfksLv~~heksg~~  115 (122)
T KOG0897|consen   81 -----RIEFPAEKSSKLYSHSQAQQSFKSLVQIHEKSGWV  115 (122)
T ss_pred             -----eEecCcchhhhHhhHHHHHHHHHHHHHHHHhcCCc
Confidence                 222222  222666667777788888888888874

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=98.69  E-value=8.9e-08  Score=70.62  Aligned_cols=66  Identities=29%  Similarity=0.583  Sum_probs=59.2

Q ss_pred             CCcEEEEEEEcCCCCCCCCCeeEEecCC---ccCccCCCCceee---ccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHH
Q 030794           51 EGGFFNAIMTFPDNYPVSPPTVRFTSEM---WHPNVYPDGKVCI---SILHPPGDDPNGYELATERWTPVHTAASVWRSL  124 (171)
Q Consensus        51 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HpnV~~~G~iCl---~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i  124 (171)
                      .|+.+.+.|.||++||..||.|....+.   +=|||+.+|.+|+   +..             .+.|+|.-++.++|...
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~-------------~D~~~P~~~~~~~l~~a  100 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELV-------------LDPWDPEGIIADCLERA  100 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcc-------------cCccCHHHHHHHHHHHH
Confidence            6899999999999999999999998764   6799999999999   444             38999999999999999


Q ss_pred             HHhhc
Q 030794          125 SPGVL  129 (171)
Q Consensus       125 ~~ll~  129 (171)
                      +.+|.
T Consensus       101 ~~lL~  105 (133)
T PF14461_consen  101 IRLLE  105 (133)
T ss_pred             HHHHH
Confidence            99987

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=98.36  E-value=5.5e-07  Score=65.46  Aligned_cols=81  Identities=23%  Similarity=0.389  Sum_probs=55.6

Q ss_pred             ceEEEEEEECCCCCCCCCcEEEEE--EEcCCCCCCCCCeeEEecCC-----ccCccCCCCceeeccCCCCCCCCCCCCCC
Q 030794           35 VFEWSVSIIGPPDTLYEGGFFNAI--MTFPDNYPVSPPTVRFTSEM-----WHPNVYPDGKVCISILHPPGDDPNGYELA  107 (171)
Q Consensus        35 ~~~w~~~i~Gp~~tpy~gg~f~~~--i~fp~~YP~~pP~v~f~t~i-----~HpnV~~~G~iCl~~l~~~~~~~~~~~~~  107 (171)
                      +....++|.    -.|+|..|.+-  |-+|.+||.+||.|......     -+.+|+.+|+|.+..|             
T Consensus        32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-------------   94 (121)
T PF05743_consen   32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-------------   94 (121)
T ss_dssp             EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-------------
T ss_pred             EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-------------
Confidence            445555553    36888888654  55799999999999775442     3459999999999999             


Q ss_pred             CCCCCc-cCcHHHHHHHHHHhhcCcHH
Q 030794          108 TERWTP-VHTAASVWRSLSPGVLNYAW  133 (171)
Q Consensus       108 ~~~W~p-~~~l~~il~~i~~ll~~~~~  133 (171)
                       +.|++ ..+|.+++..++..|...++
T Consensus        95 -~~W~~~~s~L~~lv~~l~~~F~~~pP  120 (121)
T PF05743_consen   95 -QNWNPPSSNLVDLVQELQAVFSEEPP  120 (121)
T ss_dssp             -HT--TTTS-HHHHHHHHHHCCCHS-S
T ss_pred             -ccCCCCCCCHHHHHHHHHHHHhHcCC
Confidence             68999 77999999999988765543

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=97.84  E-value=9.1e-06  Score=59.97  Aligned_cols=77  Identities=22%  Similarity=0.336  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHhh-------CCCCCeEEEecCCCCceEEEEEEECCCCCCCCCc----------EEEEEEEcCCCCC
Q 030794            4 SQASLLLQKQLKDLCK-------NPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGG----------FFNAIMTFPDNYP   66 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~-------~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP   66 (171)
                      ....+||++||+.|-+       +..+-+.++.              -++||-|.|.          .|.+++.+|..||
T Consensus        23 ~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~les--------------n~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP   88 (161)
T PF08694_consen   23 DLWVQRLKEEYQALIKYVENNKENDNDWFRLES--------------NKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYP   88 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT---EEEEE---------------TTSSEEEEEEEEEETTEEEEEEEEEE--TTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCCeEEecc--------------CCCCCccccEEEEEeeeeeEEEeeecCCCccCC
Confidence            3467899999998743       2223344442              2444444442          3556677799999


Q ss_pred             CCCCeeEEecC-CccCccCCCCceeeccC
Q 030794           67 VSPPTVRFTSE-MWHPNVYPDGKVCISIL   94 (171)
Q Consensus        67 ~~pP~v~f~t~-i~HpnV~~~G~iCl~~l   94 (171)
                      ..||.|....- --..-.|.+|+|||+.-
T Consensus        89 ~t~pEi~lPeLdGKTaKMYRGGkIClt~H  117 (161)
T PF08694_consen   89 TTAPEIALPELDGKTAKMYRGGKICLTDH  117 (161)
T ss_dssp             TS----B-GGGTTT-SSBCCCCBB---TT
T ss_pred             CCCcceeccccCCchhhhhcCceEeeecc
Confidence            99999987543 13345678999999864

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.64  E-value=0.0003  Score=58.87  Aligned_cols=81  Identities=23%  Similarity=0.396  Sum_probs=63.9

Q ss_pred             EECCCCCCCCCcEEEEEEE--cCCCCCCCCCeeEEecC-----CccCccCCCCceeeccCCCCCCCCCCCCCCCCCCCc-
Q 030794           42 IIGPPDTLYEGGFFNAIMT--FPDNYPVSPPTVRFTSE-----MWHPNVYPDGKVCISILHPPGDDPNGYELATERWTP-  113 (171)
Q Consensus        42 i~Gp~~tpy~gg~f~~~i~--fp~~YP~~pP~v~f~t~-----i~HpnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p-  113 (171)
                      +.|---.+|.|..|.+-|.  +.+.||..||.+.....     -.|-+|+.+|+|.|..|              ..|.+ 
T Consensus        55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL--------------h~W~~p  120 (365)
T KOG2391|consen   55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL--------------HNWDPP  120 (365)
T ss_pred             ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh--------------ccCCCc
Confidence            3343335889988887665  59999999999966433     14899999999999999              57998 


Q ss_pred             cCcHHHHHHHHHHhhcCcHHHhh
Q 030794          114 VHTAASVWRSLSPGVLNYAWFLM  136 (171)
Q Consensus       114 ~~~l~~il~~i~~ll~~~~~~~~  136 (171)
                      +..|..++..|.+.|.+.++.+.
T Consensus       121 ssdLv~Liq~l~a~f~~~pP~ys  143 (365)
T KOG2391|consen  121 SSDLVGLIQELIAAFSEDPPVYS  143 (365)
T ss_pred             cchHHHHHHHHHHHhcCCCcccc
Confidence            66899999999999887776554

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=97.19  E-value=0.0057  Score=44.47  Aligned_cols=103  Identities=16%  Similarity=0.275  Sum_probs=69.5

Q ss_pred             CCeEEEecCCCCceEEEEEEEC--CCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCCCCce--eeccC-CCC
Q 030794           23 DGFSAGLVDESNVFEWSVSIIG--PPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKV--CISIL-HPP   97 (171)
Q Consensus        23 ~~i~~~~~~~~n~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~i--Cl~~l-~~~   97 (171)
                      .|+..+-+.+ .-..|.+ |.|  .+.+.|....-.+.|.+|+.||..+|.+.+..|-....  .+|.+  |-+.. ...
T Consensus        12 ~g~~~E~v~e-g~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~   87 (122)
T PF14462_consen   12 RGLRWETVTE-GGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFD   87 (122)
T ss_pred             cCceEEEEEe-CCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcC
Confidence            3566666523 3334544 544  67778999999999999999999999998887732211  12223  33222 222


Q ss_pred             CCCCCCCCCCCCCCCccC-cHHHHHHHHHHhhc
Q 030794           98 GDDPNGYELATERWTPVH-TAASVWRSLSPGVL  129 (171)
Q Consensus        98 ~~~~~~~~~~~~~W~p~~-~l~~il~~i~~ll~  129 (171)
                      |..=+.|+-|...|+|.. +|.+.|..|...|.
T Consensus        88 G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~  120 (122)
T PF14462_consen   88 GRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA  120 (122)
T ss_pred             CeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence            344456777788999987 89999998887764

>KOG3357 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.16  E-value=0.00051  Score=50.10  Aligned_cols=83  Identities=19%  Similarity=0.295  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCc----------EEEEEEEcCCCCCCCCCeeEE
Q 030794            5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGG----------FFNAIMTFPDNYPVSPPTVRF   74 (171)
Q Consensus         5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f   74 (171)
                      ...+||++||+.|-.-.      + .+.++-..|.-.-.-+++|-|-|.          .|.+++.+|-.||..+|.|..
T Consensus        27 ~wvqrlkeey~sli~yv------q-nnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeial   99 (167)
T KOG3357|consen   27 LWVQRLKEEYQSLIAYV------Q-NNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIAL   99 (167)
T ss_pred             HHHHHHHHHHHHHHHHH------H-hCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccc
Confidence            46789999999874311      1 111222223222234677777663          355666779999999999975


Q ss_pred             ecCC-ccCccCCCCceeeccC
Q 030794           75 TSEM-WHPNVYPDGKVCISIL   94 (171)
Q Consensus        75 ~t~i-~HpnV~~~G~iCl~~l   94 (171)
                      ..-- -.--.|.+|+||+..-
T Consensus       100 peldgktakmyrggkiclt~h  120 (167)
T KOG3357|consen  100 PELDGKTAKMYRGGKICLTDH  120 (167)
T ss_pred             cccCchhhhhhcCceEeeccc
Confidence            4321 1224567899999654

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=96.54  E-value=0.012  Score=40.97  Aligned_cols=69  Identities=17%  Similarity=0.188  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEEC--CCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCC
Q 030794            8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIG--PPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM   78 (171)
Q Consensus         8 ~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   78 (171)
                      .+.+.|+..|+.--+..+ ... ...+...+.+.+.+  ...+.-....+++.+.||++||..+|.|.+.++.
T Consensus         4 e~~~~EieaL~sIy~~~~-~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~   74 (113)
T PF05773_consen    4 EQQEEEIEALQSIYPDDF-IEI-ESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK   74 (113)
T ss_dssp             HHHHHHHHHHHHHSSSSE-SSS-TSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred             HHHHHHHHHHHHHcCCCc-ccc-ccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence            467788888887666555 111 23445556666632  2334445578999999999999999999876553

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=95.89  E-value=0.011  Score=45.08  Aligned_cols=65  Identities=20%  Similarity=0.317  Sum_probs=52.1

Q ss_pred             EEEEcCCCCCCCCCeeEEecCCc---cCccCCC-----CceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhh
Q 030794           57 AIMTFPDNYPVSPPTVRFTSEMW---HPNVYPD-----GKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGV  128 (171)
Q Consensus        57 ~~i~fp~~YP~~pP~v~f~t~i~---HpnV~~~-----G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll  128 (171)
                      +.|.|+.+||..+|.|.++.+.|   +||++..     ..+|+-.-.            ...|.++.+++.+|..|..-|
T Consensus        57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~------------~~e~~~~~g~~~~l~rl~~Wl  124 (162)
T PF14457_consen   57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGP------------WSEWRPSWGPEGFLDRLFDWL  124 (162)
T ss_pred             EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCC------------HHHhhhccCHHHHHHHHHHHH
Confidence            56889999999999888877643   5777665     679997654            278999999999999999998


Q ss_pred             cCcHH
Q 030794          129 LNYAW  133 (171)
Q Consensus       129 ~~~~~  133 (171)
                      ..++.
T Consensus       125 ~~aA~  129 (162)
T PF14457_consen  125 RDAAQ  129 (162)
T ss_pred             HHHhh
Confidence            66443

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=95.77  E-value=0.074  Score=36.64  Aligned_cols=27  Identities=19%  Similarity=0.423  Sum_probs=22.5

Q ss_pred             CCcEEEEEEEcCCCCCCCCCeeEEecC
Q 030794           51 EGGFFNAIMTFPDNYPVSPPTVRFTSE   77 (171)
Q Consensus        51 ~gg~f~~~i~fp~~YP~~pP~v~f~t~   77 (171)
                      ....+.+.+.||++||..+|.|.+.+.
T Consensus        39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~   65 (107)
T smart00591       39 QYVSLTLQVKLPENYPDEAPPISLLNS   65 (107)
T ss_pred             cceEEEEEEECCCCCCCCCCCeEEECC
Confidence            446688999999999999999977653

>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL

Probab=87.77  E-value=0.82  Score=38.06  Aligned_cols=90  Identities=13%  Similarity=0.296  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCCC
Q 030794            7 SLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPD   86 (171)
Q Consensus         7 ~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~   86 (171)
                      .++|.+|+.++..+..  +.+..  ++++....+++..-      .....++|.+|.+||.++|.+...-|+        
T Consensus       101 ys~ll~EIe~IGW~kl--~~i~~--d~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P~--------  162 (291)
T PF09765_consen  101 YSNLLKEIEAIGWDKL--VQIQF--DDDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLPI--------  162 (291)
T ss_dssp             C-CHHHHHHHHHCGCC--EEEEE---CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TTS--------
T ss_pred             HHHHHHHHHHhccccc--eEEec--CCCccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCCc--------
Confidence            4578888888876654  33322  45777888888621      256779999999999999976433222        


Q ss_pred             CceeeccCCCCCCCCCCCCCCCCCCCc-cCcHHHHHHHHHHhhcCcHH
Q 030794           87 GKVCISILHPPGDDPNGYELATERWTP-VHTAASVWRSLSPGVLNYAW  133 (171)
Q Consensus        87 G~iCl~~l~~~~~~~~~~~~~~~~W~p-~~~l~~il~~i~~ll~~~~~  133 (171)
                           ..              ...|.+ ..+|.+++...+..+..-..
T Consensus       163 -----~~--------------~~~w~~~~ssL~~v~~qF~~~le~lq~  191 (291)
T PF09765_consen  163 -----PF--------------SLSWSPSQSSLKDVVQQFQEALESLQE  191 (291)
T ss_dssp             ------H--------------HHHHHCHT-SHHHHHHHHHHHHHHTHH
T ss_pred             -----ch--------------hhhhcccccCHHHHHHHHHHHHHHHHH
Confidence                 11              156999 66999999999888765444

FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.

>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=82.42  E-value=5.5  Score=31.64  Aligned_cols=63  Identities=19%  Similarity=0.236  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHhhCCCCCe-EEEecCCCCceEEEEEEECCCCCC---CCCcEEEEEEEcCCCCCCCCCeeEEe
Q 030794            8 LLLQKQLKDLCKNPVDGF-SAGLVDESNVFEWSVSIIGPPDTL---YEGGFFNAIMTFPDNYPVSPPTVRFT   75 (171)
Q Consensus         8 ~Rl~~El~~l~~~~~~~i-~~~~~~~~n~~~w~~~i~Gp~~tp---y~gg~f~~~i~fp~~YP~~pP~v~f~   75 (171)
                      .-..+|+.-|....+..+ .+.   ..++..+.++|. ...+-   |.| .+.+.+.++++||..+|.|.+.
T Consensus         5 EeQe~E~EaLeSIY~de~~~i~---~~~~~~f~v~iq-~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~   71 (215)
T KOG4018|consen    5 EEQEEELEALESIYPDEFKHIN---SEDPPIFEVTIQ-YEEGENDEPKG-SFILVFSLTENYPDEAPLIEAF   71 (215)
T ss_pred             HHHHHHHHHHHHhccchhhhhh---ccCCccceeeee-cccccCCCccc-cEEEEEEccCCCCCCCcceecc
Confidence            345567777776665554 332   223333556665 33322   333 7889999999999999999443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=80.63  E-value=8.8  Score=36.16  Aligned_cols=68  Identities=19%  Similarity=0.370  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCc-EEEEEEEcCCCCCC-CCCeeEEecC
Q 030794            7 SLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGG-FFNAIMTFPDNYPV-SPPTVRFTSE   77 (171)
Q Consensus         7 ~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg-~f~~~i~fp~~YP~-~pP~v~f~t~   77 (171)
                      .+-|.+|+.-|-.. .+.+.++..|-. -.+-.+++-||-.-. .|- ..++.|.||.+||. .+|.++|..+
T Consensus       422 pQnLgeE~S~Ig~k-~~nV~fEkidva-~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~  491 (1081)
T KOG0309|consen  422 PQNLGEEFSLIGVK-IRNVNFEKIDVA-DRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP  491 (1081)
T ss_pred             hhhHHhHHhHhhcc-ccccceEeeccc-cceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence            34566777766433 234555544222 224455555543322 343 44788999999997 6799999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	171
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		1e-37
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		1e-35
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		2e-33
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		2e-33
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		2e-33
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		2e-33
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		1e-31
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		1e-31
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		7e-31
1jas_A	152	Hsubc2b Length = 152		2e-16
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		3e-16
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		4e-16
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		1e-15
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		1e-15
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		2e-15
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-15
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		2e-15
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		5e-15
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		6e-15
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		1e-14
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		1e-14
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		2e-14
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		2e-14
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		3e-14
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		3e-14
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		3e-14
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		3e-14
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		3e-14
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		3e-14
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		3e-14
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		3e-14
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		3e-14
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		6e-14
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		7e-14
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		1e-13
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-13
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-13
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		2e-13
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		3e-13
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		4e-13
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		4e-13
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		5e-13
3jvz_A	146	E2~ubiquitin-Hect Length = 146		7e-13
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		1e-12
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		1e-12
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		1e-12
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		1e-12
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		1e-12
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		1e-12
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		1e-12
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		1e-12
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		2e-12
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		2e-12
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		2e-12
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		2e-12
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		2e-12
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		3e-12
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		3e-12
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		3e-12
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		3e-12
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		4e-12
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		4e-12
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		5e-12
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		7e-12
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		7e-12
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		9e-12
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		1e-11
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		1e-11
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		2e-11
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		3e-11
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		5e-11
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		5e-11
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		1e-10
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		2e-10
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		2e-10
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		2e-10
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		2e-10
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		5e-10
2a7l_A	136	Structure Of The Human Hypothetical Ubiquitin-Conju		6e-10
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		7e-10
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		7e-10
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		7e-10
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		7e-10
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		8e-10
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		9e-10
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		2e-09
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		2e-09
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		4e-09
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		4e-09
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		4e-09
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		4e-09
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		4e-09
3ceg_A	323	Crystal Structure Of The Ubc Domain Of Baculoviral		8e-09
2h2y_A	136	Crystal Structure Of Ubiquitin Conjugating Enzyme E		3e-08
3fn1_B	167	E2-Ring Expansion Of The Nedd8 Cascade Confers Spec		4e-08
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		5e-08
2edi_A	173	Solution Structure Of The Uq_con Domain From Human		6e-08
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		8e-08
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		2e-07
2fo3_A	125	Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Le		3e-07
2q0v_A	156	Crystal Structure Of Ubiquitin Conjugating Enzyme E		9e-07
3e95_C	158	Crystal Structure Of The Plasmodium Falciparum Ubiq		1e-06
4ds2_A	167	Ubiquitin Conjugating Enzyme (Putative) From Trypan		4e-06
2f4w_A	187	Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 1		2e-05
1yf9_A	171	Structural Analysis Of Leishmania Major Ubiquitin C		2e-05
1y8x_A	160	Structural Basis For Recruitment Of Ubc12 By An E2-		4e-05
3o2u_A	190	S. Cerevisiae Ubc12 Length = 190		1e-04
2nvu_C	180	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		6e-04

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score =  151 bits (382), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/144 (48%), Positives = 93/144 (64%), Gaps = 10/144 (6%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           D+ + PVDGFSAGLVD++++++W V +IGPPDTLYEGGFF AI+ FP +YP  PP ++F 
Sbjct: 14  DMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFI 73
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL----------S 125
           SE+WHPN+  +G VCISILH PGDD  GYE   ERW PVHT  ++  S+          S
Sbjct: 74  SEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFES 133
Query: 126 PGVLNYAWFLMNAGYEYGNTLHSC 149
           P  ++ A        E+   +  C
Sbjct: 134 PANVDAAKMQRENYAEFKKKVAQC 157

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 63/109 (57%), Positives = 84/109 (77%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           +L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +TFP +YP+ PP ++F 
Sbjct: 28  ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFI 87
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           +E+WHPNV  +G VCISILH PG+D  GYE   ERW P+HT  ++  S+
Sbjct: 88  TEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISV 136

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 79/109 (72%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
            L  NP +G  AG ++E N FEW   I+GP DT +E G F AI++FP +YP+SPP +RFT
Sbjct: 20  QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 79
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
            EM+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV +   +  S+
Sbjct: 80  CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 128

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 79/109 (72%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
            L  NP +G  AG ++E N FEW   I+GP DT +E G F AI++FP +YP+SPP +RFT
Sbjct: 14  QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 73
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
            EM+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV +   +  S+
Sbjct: 74  CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 122

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 79/109 (72%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
            L  NP +G  AG ++E N FEW   I+GP DT +E G F AI++FP +YP+SPP +RFT
Sbjct: 17  QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 76
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
            EM+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV +   +  S+
Sbjct: 77  CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 125

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 79/109 (72%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
            L  NP +G  AG ++E N FEW   I+GP DT +E G F AI++FP +YP+SPP +RFT
Sbjct: 18  QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFT 77
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
            EM+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV +   +  S+
Sbjct: 78  CEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 126

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 57/108 (52%), Positives = 74/108 (68%)
Query: 17  LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
           L + PV+GF   LVDE +++ W V+I GPP+T YEGG+F A + FP +YP SPP  RF +
Sbjct: 19  LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT 78
Query: 77  EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           +MWHPN+Y  G VCISILHPP DDP   EL +ERW P     ++  S+
Sbjct: 79  KMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 126

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 57/108 (52%), Positives = 74/108 (68%)
Query: 17  LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
           L + PV+GF   LVDE +++ W V+I GPP+T YEGG+F A + FP +YP SPP  RF +
Sbjct: 16  LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT 75
Query: 77  EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           +MWHPN+Y  G VCISILHPP DDP   EL +ERW P     ++  S+
Sbjct: 76  KMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 123

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score =  129 bits (324), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 63/136 (46%), Positives = 81/136 (59%), Gaps = 7/136 (5%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
            L K+   G  AG   E+N+F W   I GPPDT Y  G FNA + FP +YP+SPP + FT
Sbjct: 15  QLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFT 74
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFL 135
             + HPN+YP+G+VCISILH PGDDPN YELA ERW+PV +   +       +L+    L
Sbjct: 75  PSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKI-------LLSVMSML 127
Query: 136 MNAGYEYGNTLHSCFL 151
                E G  + +C L
Sbjct: 128 SEPNIESGANIDACIL 143

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 17  LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
           L ++P  G S G   E+N+ +W+  I GP  T +E G F  ++ F + YP  PPTVRF S
Sbjct: 16  LQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLS 74
Query: 77  EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           +M+HPNVY DG +C+ IL               RW+P +  +S+  S+ 
Sbjct: 75  KMFHPNVYADGSICLDILQ-------------NRWSPTYDVSSILTSIQ 110

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 13/92 (14%)
Query: 34  NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
           NV  W+  IIGP DT YE G F  ++ F + YP  PP V+F SEM+HPNVY +G++C+ I
Sbjct: 32  NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDI 91
Query: 94  LHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           L               RWTP +  AS+  S+ 
Sbjct: 92  LQ-------------NRWTPTYDVASILTSIQ 110

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 80.5 bits (197), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 14/109 (12%)
Query: 17  LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
           L ++P  G S G   ++N+  W+  I GP DT ++GG F   + F ++YP  PPTVRF S
Sbjct: 16  LQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS 74
Query: 77  EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
            M+HPN+Y DG +C+ IL               +W+P++  A++  S+ 
Sbjct: 75  RMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQ 110

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 17  LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
           L ++P  G S G   E N+  W   I GP +T +E G F   + F + YP  PPTV+F S
Sbjct: 16  LQEDPPAGVS-GAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFIS 74
Query: 77  EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           +M+HPNVY DG +C+ IL               RW+P +  A++  S+ 
Sbjct: 75  KMFHPNVYADGSICLDILQ-------------NRWSPTYDVAAILTSIQ 110

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 17  LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
           L ++P  G S G   E N+  W   I GP +T +E G F   + F + YP  PPTV+F S
Sbjct: 19  LQEDPPAGVS-GAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFIS 77
Query: 77  EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           +M+HPNVY DG +C+ IL               RW+P +  A++  S+ 
Sbjct: 78  KMFHPNVYADGSICLDILQ-------------NRWSPTYDVAAILTSIQ 113

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GPPD+ Y+GG F   + FP +YP  PP + FT
Sbjct: 18  DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 76
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           ++++HPN+  +G +C+ IL               +W+P  T + V  S+
Sbjct: 77  TKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSI 112

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GPPD+ Y+GG F   + FP +YP  PP + FT
Sbjct: 30  DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 88
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           ++++HPN+  +G +C+ IL               +W+P  T + V  S+
Sbjct: 89  TKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSI 124

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GPPD+ Y+GG F   + FP +YP  PP + FT
Sbjct: 14  DLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 72
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           ++++HPN+  +G +C+ IL               +W+P  T + V  S+
Sbjct: 73  TKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSI 108

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 14/110 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL K+P    SAG V + ++F W  +I+GP D+ Y GG F   + FP +YP  PP V FT
Sbjct: 12  DLGKDPPSSSSAGPVGD-DLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFT 70
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           + ++HPN+  +G +C+ IL              ++W+P  T + V  S+S
Sbjct: 71  TRIYHPNINSNGSICLDILR-------------DQWSPALTISKVLLSIS 107

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 14/110 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL K+P    SAG V + ++F W  +I+GP D+ Y GG F   + FP +YP  PP V FT
Sbjct: 32  DLSKDPPTNCSAGPVGD-DMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFT 90
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           ++++HPN+   G +C+ IL              ++W+P  T + V  S+S
Sbjct: 91  TKIYHPNINSQGAICLDIL-------------KDQWSPALTISKVLLSIS 127

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GPP++ Y+GG F   + FP +YP  PP V FT
Sbjct: 15  DLGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFT 73
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + ++HPN+  +G +C+ IL               +W+P  T + V  S+
Sbjct: 74  TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 109

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 17  DLQRDPPAQCSAGPVGD-DLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 75
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           ++++HPN+  +G +C+ IL               +W+P  T + V  S+
Sbjct: 76  TKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSI 111

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 34  NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
           ++  W V I G P T +EGG +   M FP+ YP  PP  RFT  ++HPNVYP G VC+SI
Sbjct: 43  DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSI 102
Query: 94  LH 95
           L+
Sbjct: 103 LN 104

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 14  DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + ++HPN+  +G +C+ IL               +W+P  T + V  S+
Sbjct: 73  TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 108

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 14  DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + ++HPN+  +G +C+ IL               +W+P  T + V  S+
Sbjct: 73  TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 108

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 30  DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 88
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + ++HPN+  +G +C+ IL               +W+P  T + V  S+
Sbjct: 89  TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 124

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 17  DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 75
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + ++HPN+  +G +C+ IL               +W+P  T + V  S+
Sbjct: 76  TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 111

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 14  DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + ++HPN+  +G +C+ IL               +W+P  T + V  S+
Sbjct: 73  TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 108

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 22  DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 80
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + ++HPN+  +G +C+ IL               +W+P  T + V  S+
Sbjct: 81  TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 116

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 22  DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 80
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + ++HPN+  +G +C+ IL               +W+P  T + V  S+
Sbjct: 81  TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 116

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 12  DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 70
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + ++HPN+  +G +C+ IL               +W+P  T + V  S+
Sbjct: 71  TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 106

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 11  DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 69
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + ++HPN+  +G +C+ IL               +W+P  T + V  S+
Sbjct: 70  TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 105

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 20  DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 78
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + ++HPN+  +G +C+ IL               +W+P  T + V  S+
Sbjct: 79  TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 114

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
          DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 14 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76 SEMWHPNVYPDGKVCISILH 95
          + ++HPN+  +G +C+ IL 
Sbjct: 73 TRIYHPNINSNGSICLDILR 92

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + +++ W  SI+GP D+ Y GG F   + FP +YP  PP + FT
Sbjct: 13  DLERDPPTSCSAGPVGD-DLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFT 71
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           ++++HPN+  +G +C+ IL              ++W+P  T + V  S+
Sbjct: 72  TKIYHPNINANGNICLDILK-------------DQWSPALTLSKVLLSI 107

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P     AG V + ++F W  +I+GPPD+ Y+GG F   + FP +YP  PP + FT
Sbjct: 18  DLQRDPPAHCRAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT 76
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           ++++HPN+  +G + + IL               +W+P  T + V  S+
Sbjct: 77  TKIYHPNINSNGSIKLDILR-------------SQWSPALTVSKVLLSI 112

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 14  DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + ++HPN+  +G +C+  L               +W+P  T + V  S+
Sbjct: 73  TRIYHPNINSNGSICLDALR-------------SQWSPALTISKVLLSI 108

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  + +GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 14  DLARDPPAQCSAGPVGD-DMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + ++HPN+  +G +C+ IL               +W+P  T + V  S+
Sbjct: 73  TRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 108

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 14  DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 72
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + ++HPN+  +G + + IL               +W+P  T + V  S+
Sbjct: 73  TRIYHPNINSNGSISLDILR-------------SQWSPALTISKVLLSI 108

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 15  DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 73
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + ++HPN+  +G + + IL               +W+P  T + V  S+
Sbjct: 74  TRIYHPNINSNGSISLDILR-------------SQWSPALTISKVLLSI 109

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 12  DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 70
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + ++HPN+  +G + + IL               +W+P  T + V  S+
Sbjct: 71  TRIYHPNINSNGSISLDILR-------------SQWSPALTISKVLLSI 106

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 30  DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 88
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + ++HPN+  +G + + IL               +W+P  T + V  S+
Sbjct: 89  TRIYHPNINSNGSIXLDILR-------------SQWSPALTISKVLLSI 124

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 31  DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVC 90
           D  N+F+W  ++ GP DT+YE   +   + FP +YP  PP V+FT+  WHPNV   G +C
Sbjct: 34  DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNIC 93
Query: 91  ISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGV--------LN-YAWFLMNAGYE 141
           + IL              E WT  +   ++  SL   +        LN  A  + +   E
Sbjct: 94  LDILK-------------ENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSNQTE 140
Query: 142 YGNTLHSCFLSVHS 155
           Y   LH  + +  S
Sbjct: 141 YKKVLHEKYKTAQS 154

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 16 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
          DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 11 DLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 69
Query: 76 SEMWHPNVYPDGKVCISILH 95
          + ++HPN+  +G + + IL 
Sbjct: 70 TRIYHPNINSNGSISLDILR 89

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34  NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
           N+  W  +I G   T +EGG F   M F D+YP SPP  +F   ++HPNVYP G VC+SI
Sbjct: 40  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 94  LHPPGD 99
           L    D
Sbjct: 100 LEEDKD 105

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34  NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
           N+  W  +I G   T +EGG F   M F D+YP SPP  +F   ++HPNVYP G VC+SI
Sbjct: 40  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 94  LHPPGD 99
           L    D
Sbjct: 100 LEEDKD 105

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34  NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
           N+  W  +I G   T +EGG F   M F D+YP SPP  +F   ++HPNVYP G VC+SI
Sbjct: 39  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 94  LHPPGD 99
           L    D
Sbjct: 99  LEEDKD 104

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34  NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
           N+  W  +I G   T +EGG F   M F D+YP SPP  +F   ++HPNVYP G VC+SI
Sbjct: 38  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 97
Query: 94  LHPPGD 99
           L    D
Sbjct: 98  LEEDKD 103

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34  NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
           N+  W  +I G   T +EGG F   M F D+YP SPP  +F   ++HPNVYP G VC+SI
Sbjct: 40  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 99
Query: 94  LHPPGD 99
           L    D
Sbjct: 100 LEEDKD 105

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34  NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
           N+  W  +I G   T +EGG F   M F D+YP SPP  +F   ++HPNVYP G VC+SI
Sbjct: 39  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98
Query: 94  LHPPGD 99
           L    D
Sbjct: 99  LEEDKD 104

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34  NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
           N+  W  +I G   T +EGG F   M F D+YP SPP  +F   ++HPNVYP G VC+SI
Sbjct: 42  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 101
Query: 94  LHPPGD 99
           L    D
Sbjct: 102 LEEDKD 107

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 34  NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
           N+  W  +I G   T +EGG F   M F D+YP SPP  +F   ++HPNVYP G VC+SI
Sbjct: 37  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 96
Query: 94  LHPPGD 99
           L    D
Sbjct: 97  LEEDKD 102

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 17  LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
           L   PV G  A   DESN   + V I GP D+ +EGG F   +  P+ YP++ P VRF +
Sbjct: 15  LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 73
Query: 77  EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           +++HPNV   G++C+ IL              ++W+P     +V  S+ 
Sbjct: 74  KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQ 109

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 17  LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
           L   PV G  A   DESN   + V I GP D+ +EGG F   +  P+ YP++ P VRF +
Sbjct: 18  LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 76
Query: 77  EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           +++HPNV   G++C+ IL              ++W+P     +V  S+ 
Sbjct: 77  KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQ 112

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 17  LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
           L   PV G  A   DESN   + V I GP D+ +EGG F   +  P+ YP++ P VRF +
Sbjct: 17  LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 75
Query: 77  EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           +++HPNV   G++C+ IL              ++W+P     +V  S+ 
Sbjct: 76  KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQ 111

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 17  LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
           L   PV G  A   DESN   + V I GP D+ +EGG F   +  P+ YP++ P VRF +
Sbjct: 20  LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 78
Query: 77  EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           +++HPNV   G++C+ IL              ++W+P     +V  S+ 
Sbjct: 79  KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQ 114

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 17  LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
           L   PV G  A   DESN   + V I GP D+ +EGG F   +  P+ YP++ P VRF +
Sbjct: 13  LLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMT 71
Query: 77  EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           +++HPNV   G++C+ IL              ++W+P     +V  S+ 
Sbjct: 72  KIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSIQ 107

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 30  VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPD-GK 88
           + +SN FEW   I GP  T YEGG F   +T P++YP +PP ++F +++WHPN+    G 
Sbjct: 47  IKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGA 106
Query: 89  VCISILH 95
           +C+ +L 
Sbjct: 107 ICLDVLK 113

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 23  DGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN 82
           +     LVDE N  E    I GPPDT YEGG +   +  P+ YP +PP VRF +++WHPN
Sbjct: 42  NQIKVDLVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 100
Query: 83  VYP-DGKVCISILH 95
           +    G +C+ IL 
Sbjct: 101 ISSVTGAICLDILK 114

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 29  LVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP-DG 87
           LVDE N  E    I GPPDT YEGG +   +  P+ YP +PP VRF +++WHPN+    G
Sbjct: 84  LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 142
Query: 88  KVCISILH 95
            +C+ IL 
Sbjct: 143 AICLDILK 150

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 23 DGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN 82
          +     LVDE N  E    I GPPDT YEGG +   +  P+ YP +PP VRF +++WHPN
Sbjct: 27 NQIKVDLVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 85
Query: 83 VYP-DGKVCISILH 95
          +    G +C+ IL 
Sbjct: 86 ISSVTGAICLDILK 99

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 23 DGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN 82
          +     LVDE N  E    I GPPDT YEGG +   +  P+ YP +PP VRF +++WHPN
Sbjct: 26 NQIKVDLVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 84
Query: 83 VYP-DGKVCISILH 95
          +    G +C+ IL 
Sbjct: 85 ISSVTGAICLDILK 98

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 23  DGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN 82
           +     LVDE N  E    I GPPDT YEGG +   +  P+ YP +PP VRF +++WHPN
Sbjct: 29  NQIKVDLVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 87
Query: 83  VYP-DGKVCISILH 95
           +    G +C+ IL 
Sbjct: 88  ISSVTGAICLDILK 101

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%)
Query: 34  NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
           N+  W  +I G   T +EGG F   M F D+YP SPP  +F   ++HP VYP G VC+SI
Sbjct: 40  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSI 99
Query: 94  LHPPGD 99
           L    D
Sbjct: 100 LEEDKD 105

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL ++P     AG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  PP V FT
Sbjct: 12  DLARDPPAQCRAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT 70
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + ++HP +  +G + + IL               +W+P  T + V  S+
Sbjct: 71  TRIYHPAINSNGSISLDILR-------------SQWSPALTISKVLLSI 106

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           D+  +P    SAG   + N++EW  +I+GPP ++YEGG F   +TF   YP  PP V F 
Sbjct: 59  DITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFR 117
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + ++H N+   G +C+ IL              + W+P  T + V  S+
Sbjct: 118 TRIYHCNINSQGVICLDILK-------------DNWSPALTISKVLLSI 153

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 66.2 bits (160), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Query: 34  NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
           N++EW  +I+GPP ++YEGG F   +TF  +YP  PP V F + ++H N+   G +C+ I
Sbjct: 31  NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDI 90
Query: 94  LHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           L              + W+P  T + V  S+
Sbjct: 91  LK-------------DNWSPALTISKVLLSI 108

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%)
Query: 34  NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
           N+  W  +I G   T +EGG F   M F D+YP SPP  +F   ++HPNV P G VC+SI
Sbjct: 40  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSI 99
Query: 94  LHPPGD 99
           L    D
Sbjct: 100 LEEDKD 105

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 14/110 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           ++ ++P    SAG V + ++F W+ +I GP D+ Y+GG F   + FP +YP   P V F 
Sbjct: 15  EIQQDPPCNCSAGPVGD-DIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFM 73
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           ++++HPN+  +G +C+ IL              ++W+P  T + V  S+S
Sbjct: 74  TKVYHPNINKNGVICLDILK-------------DQWSPALTLSRVLLSIS 110

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%)
Query: 34  NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
           N+  W  +I G   T +EGG F   M F D+YP SPP  +F   ++HPNVYP G V +SI
Sbjct: 37  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSI 96
Query: 94  LHPPGD 99
           L    D
Sbjct: 97  LEEDKD 102

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 38/66 (57%)
Query: 34  NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
           N+  W  +I G   T +EGG F   M F D+YP SPP  +F   ++HPNVYP G V +SI
Sbjct: 37  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSI 96
Query: 94  LHPPGD 99
           L    D
Sbjct: 97  LEEDKD 102

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
          L  +PV G +A   D+ N+  + V+I GP  + YE G F   +  PD+YP+  P VRF +
Sbjct: 15 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
Query: 77 EMWHPNVYPDGKVCISILH 95
          +++HPN+   G++C+ +L 
Sbjct: 74 KIYHPNIDRLGRICLDVLK 92

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
          L  +PV G +A   D+ N+  + V+I GP  + YE G F   +  PD+YP+  P VRF +
Sbjct: 17 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 75
Query: 77 EMWHPNVYPDGKVCISILH 95
          +++HPN+   G++C+ +L 
Sbjct: 76 KIYHPNIDRLGRICLDVLK 94

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 20/121 (16%)
Query: 16  DLCKNPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVR 73
           D   NP  G    L  +DE+++ +W   I GP DT YE   F  ++  P +YP++PP + 
Sbjct: 26  DPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKIS 85
Query: 74  F-TSEMWHPNVY-PDGKVCISILHPPGDDPNGYELATERWTPV----HTAASVWRSLSPG 127
           F  + + H NV    G++C++IL P            E WTPV    H   +VWR L   
Sbjct: 86  FMQNNILHSNVKSATGEICLNILKP------------EEWTPVWDLLHCVHAVWRLLREP 133
Query: 128 V 128
           V
Sbjct: 134 V 134

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 20/119 (16%)
Query: 20  NPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRF-TS 76
           NP  G    L  +DE+++ +W   I GP DT YE   F  ++  P +YP++PP + F  +
Sbjct: 30  NPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQN 89
Query: 77  EMWHPNVY-PDGKVCISILHPPGDDPNGYELATERWTPV----HTAASVWRSLSPGVLN 130
            + H NV    G++C++IL P            E WTPV    H   +VWR L   V +
Sbjct: 90  NILHCNVKSATGEICLNILKP------------EEWTPVWDLLHCVHAVWRLLREPVCD 136

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 20/119 (16%)
Query: 20  NPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRF-TS 76
           NP  G    L  +DE+++ +W   I GP DT YE   F  ++  P +YP++PP + F  +
Sbjct: 30  NPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQN 89
Query: 77  EMWHPNVY-PDGKVCISILHPPGDDPNGYELATERWTPV----HTAASVWRSLSPGVLN 130
            + H NV    G++C++IL P            E WTPV    H   +VWR L   V +
Sbjct: 90  NILHCNVKSATGEICLNILKP------------EEWTPVWDLLHCVHAVWRLLREPVCD 136

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           +L   P  G  A  V E N   +++ I GP  T YEGG +   +  P+ YP+ PP VRF 
Sbjct: 12  NLANEPPPGIMAVPVPE-NYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFL 70
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           ++++HPN+   G++C+ IL              ++W+P     +V  S+ 
Sbjct: 71  TKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQ 107

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 14/110 (12%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           +L   P  G  A  V E N   +++ I GP  T YEGG +   +  P+ YP+ PP VRF 
Sbjct: 12  NLANEPPPGIMAVPVPE-NYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFL 70
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           ++++HPN+   G++C+ IL              ++W+P     +V  S+ 
Sbjct: 71  TKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQ 107

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
          L  +PV G +A   D+ N+  + V+I GP  + YE G F   +  PD+YP+  P VRF +
Sbjct: 15 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
Query: 77 EMWHPNVYPDGKVCISILH 95
          +++HPN+   G++ + +L 
Sbjct: 74 KIYHPNIDRLGRISLDVLK 92

>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 15/95 (15%)
Query: 32  ESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW--HPNVYPDGKV 89
           ++++ +W V + G P TLYEG  F  +  F   YP   P V FT E    HP+VY +G +
Sbjct: 50  QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHI 109
Query: 90  CISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           C+SIL             TE W+P  +  SV  S+
Sbjct: 110 CLSIL-------------TEDWSPALSVQSVCLSI 131

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 22  VDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHP 81
           +  F    VDE+N+  W   +I P +  Y+ G F   + FP  YP  PP + F ++++HP
Sbjct: 19  MKNFRNIQVDEANLLTWQ-GLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHP 77
Query: 82  NVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           N+   G+VC+ +            ++ E W P      V +SL
Sbjct: 78  NIDEKGQVCLPV------------ISAENWKPATKTDQVIQSL 108

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 22  VDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHP 81
           +  F    VDE+N+  W   +I P +  Y+ G F   + FP  YP  PP + F ++++HP
Sbjct: 21  MKNFRNIQVDEANLLTWQ-GLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHP 79
Query: 82  NVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           N+   G+VC+ +            ++ E W P      V +SL
Sbjct: 80  NIDEKGQVCLPV------------ISAENWKPATKTDQVIQSL 110

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 24  GFSAGLVDESN----VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79
           GF A  V +++    + +W   I G   T + GG +   + +P+ YP  PP V+F +  +
Sbjct: 23  GFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY 82
Query: 80  HPNVYPDGKVCISILHPPGD 99
           HPNVYP G +C+SIL+   D
Sbjct: 83  HPNVYPSGTICLSILNEDQD 102

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 24  GFSAGLVDESN----VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79
           GF A  V +++    + +W   I G   T + GG +   + +P+ YP  PP V+F +  +
Sbjct: 25  GFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY 84
Query: 80  HPNVYPDGKVCISILHPPGD 99
           HPNVYP G +C+SIL+   D
Sbjct: 85  HPNVYPSGTICLSILNEDQD 104

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL K P         D++NV  W  +++ P    Y    FN  ++FP  YP  PP ++FT
Sbjct: 15  DLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFT 73
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           ++++HPNV  +G++C+ I            +++E W P      V  +L+
Sbjct: 74  TKIYHPNVDENGQICLPI------------ISSENWKPCTKTCQVLEALN 111

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL K P         D++NV  W  +++ P    Y    FN  ++FP  YP  PP ++FT
Sbjct: 12  DLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFT 70
Query: 76  SEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           ++++HPNV  +G++C+ I            +++E W P      V  +L+
Sbjct: 71  TKIYHPNVDENGQICLPI------------ISSENWKPCTKTCQVLEALN 108

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 31  DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVC 90
           D+  + +    I+G  +T YE G F   +  P+ YP  PP +RF + ++HPN+   G++C
Sbjct: 29  DKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRIC 88
Query: 91  ISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           + +L  P   P G       W P    A+V  S+ 
Sbjct: 89  LDVLKLP---PKGA------WRPSLNIATVLTSIQ 114

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 24  GFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV 83
           G SA +V   ++  W   I GP  T YEGG F   +  P +YP +PP ++F +++WHPN+
Sbjct: 64  GVSAQIVG-GDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNI 122
Query: 84  YPD-GKVCISIL 94
               G +C+ IL
Sbjct: 123 SSQTGAICLDIL 134

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 17  LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
           L  +P DG      +E ++ +  V+I GP  T Y GG F   +    ++P SPP   F +
Sbjct: 25  LTADPPDGIKV-FPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLT 83
Query: 77  EMWHPNVYPDGKVCISILH 95
           +++HPNV  +G++C+++L 
Sbjct: 84  KIFHPNVGANGEICVNVLK 102

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 20  NPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79
           +P    +   V ES++     + +GPP T YEGG F   +  P  YP  PP ++F ++++
Sbjct: 16  DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVY 75
Query: 80  HPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           HPN+    G +C+ IL                W+PV T  S   SL 
Sbjct: 76  HPNISSVTGAICLDIL-------------KNAWSPVITLKSALISLQ 109

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 17 LCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS 76
          L  +PV G +A   D+ N+  + V+I GP  + YE G F   +  PD+YP+  P VRF +
Sbjct: 15 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
Query: 77 EMWHPNVYPDGKVCISILH 95
          +++HP +   G++ + +L 
Sbjct: 74 KIYHPAIDRLGRISLDVLK 92

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 37  EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV-YPDGKVCISILH 95
           ++ V   GP  T YEGG +   +T PD+YP + P++ F +++ HPNV    G VC+ +++
Sbjct: 30  DFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVIN 89
Query: 96  PPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY 131
                        + WTP+++  +V+    P +L Y
Sbjct: 90  -------------QTWTPLYSLVNVFEVFLPQLLTY 112

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 20  NPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW 79
           +P    +   V ES++     + +GPP T YEGG F   +  P  YP  PP ++F ++++
Sbjct: 17  DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVY 76
Query: 80  HPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           HPN+    G +C+ IL                W+PV T  S   SL 
Sbjct: 77  HPNISSVTGAICLDILR-------------NAWSPVITLKSALISLQ 110

>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap Repeat- Containing Protein 6 Length = 323

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 31  DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH-----PNVYP 85
           DE  +    V I GP DT Y  G F   + FP +YP SPP V   +   H     PN+Y 
Sbjct: 105 DEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN 164
Query: 86  DGKVCISILHPPGDDPNGYELATERWTPVHTA-ASVWRSLSPGVLNYAWFLMNAGYE 141
           DGKVC+SIL+     P       E+W P  ++   V  S+   +L    +    GYE
Sbjct: 165 DGKVCLSILNTWHGRPE------EKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYE 215

>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From Plasmodium Falciparum Length = 136

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 30  VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE-MWHPNVYPDGK 88
           V  SN+  W V  +G  +T+Y    +   + FPDNYP+ PP V F  +   H +VY +G 
Sbjct: 44  VHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGD 103
Query: 89  VCISILHPPGDDPN 102
           +C+S+L   GDD N
Sbjct: 104 ICLSVL---GDDYN 114

>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity To Cullin Modification Length = 167

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 43  IGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPN 102
           + P +  Y+GG F      PD Y + PP V+  +++WHPN+   G++C+S+L     D  
Sbjct: 51  VTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGT 110
Query: 103 GYELATERWTPVHTAASV---WRSLSPGVLNY 131
           G       W P  T   V     SL   +LN+
Sbjct: 111 G-------WAPTRTLKDVVWGLNSLFTDLLNF 135

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 16  DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT 75
           DL +N   G +A  V E ++ EW V I G  +++++G  F   + F   Y  +PP V+F 
Sbjct: 34  DLKENNYKGITAKPVSE-DMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFI 92
Query: 76  SEMWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           +  +HPNV P  G+ CI  L  P           E+W   +T +S+  +L 
Sbjct: 93  TIPFHPNVDPHTGQPCIDFLDNP-----------EKWNTNYTLSSILLALQ 132

>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8- Conjugating Enzyme Nce2 Length = 173

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 43  IGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPN 102
           + P +  Y+GG F      PD Y + PP V+  +++WHPN+   G++C+S+L     D  
Sbjct: 51  VTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGT 110
Query: 103 GYELATERWTPVHTAASV---WRSLSPGVLNY 131
           G       W P  T   V     SL   +LN+
Sbjct: 111 G-------WAPTRTLKDVVWGLNSLFTDLLNF 135

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 37  EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV-YPDGKVCISILH 95
           E+ V   GP  T YEGG +   +  PD YP   P++ F ++++HPN+    G VC+ +++
Sbjct: 52  EFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVIN 111
Query: 96  PPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY 131
                        + WT ++   +++ S  P +L Y
Sbjct: 112 -------------QTWTALYDLTNIFESFLPQLLAY 134

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 31  DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVC 90
           +  N+F+W  +I G   T+YE   +   + FP  YP + PTV+F +  +HPNV   G + 
Sbjct: 55  ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNIS 114
Query: 91  ISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           + IL              E+W+ ++   ++  S+ 
Sbjct: 115 LDILK-------------EKWSALYDVRTILLSIQ 136

>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Length = 125

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 30  VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE-MWHPNVYPDGK 88
           V  +N+  W V  +G  +T+Y    +   + FPD+YP+ PP V F  +   H +VY +G 
Sbjct: 30  VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGD 89
Query: 89  VCISILHPPGDDPN 102
           +C+S+L   GDD N
Sbjct: 90  ICLSLL---GDDYN 100

>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2, Putative, From Plasmodium Falciparum Length = 156

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 16/130 (12%)
Query: 20  NPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77
           N  +G S GL   D+  +  WS +I G P T++E   ++  +   DNYP SPPTV+F ++
Sbjct: 37  NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 96
Query: 78  MWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLM- 136
           +    V   G+V  + LH             + W   +T  ++  SL   +L+ A   + 
Sbjct: 97  IEMSCVDNCGRVIKNNLH-----------ILKNWNRNYTIETILISLRQEMLSSANKRLP 145
Query: 137 --NAGYEYGN 144
             N G  Y N
Sbjct: 146 QPNEGEVYSN 155

>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 158

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 20  NPVDGFSAGL--VDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE 77
           N  +G S GL   D+  +  WS +I G P T++E   ++  +   DNYP SPPTV+F ++
Sbjct: 41  NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 100
Query: 78  MWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYA 132
           +    V   G+V  + LH             + W   +T  ++  SL   +L+ A
Sbjct: 101 IEMSCVDNCGRVIKNNLH-----------ILKNWNRNYTIETILISLRQEMLSSA 144

>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma Cruzi Length = 167

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 15/95 (15%)
Query: 30  VDESNVFEWSVSIIGPPDTLY--EGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDG 87
           VD   ++ W + +  P D++Y   G  +   + F D+YP  PPTVRF + ++ P V  +G
Sbjct: 44  VDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEG 103
Query: 88  KVCISILHPPGDDPNGYELATERWTPVHTAASVWR 122
            +C  +++             + WTP   A+ V +
Sbjct: 104 GICDRMVN-------------DFWTPDQHASDVIK 125

>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 187

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 31/140 (22%)
Query: 33  SNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN--VYPDGKVC 90
           SN+ EW   + GP  T YEGG+++  + FP  +P  PP++     M  PN     + ++C
Sbjct: 41  SNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIY----MITPNGRFKCNTRLC 96
Query: 91  ISI--LHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAWFLMNAGYEYGNTLHS 148
           +SI   HP            + W P  + +++      G+L+   F++  G   G+   S
Sbjct: 97  LSITDFHP------------DTWNPAWSVSTILT----GLLS---FMVEKGPTLGSIETS 137
Query: 149 CF----LSVHSVACHLMAVV 164
            F    L+V S+A +L   V
Sbjct: 138 DFTKRQLAVQSLAFNLKDKV 157

>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 35  VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV-YPDGKVCISI 93
           V E+ V   GP  T YE G +   +  P +YP   P++ F + + HPNV    G VC+ +
Sbjct: 37  VAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDV 96
Query: 94  LHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY 131
           ++             + WTP++   +++    P +L Y
Sbjct: 97  IN-------------QTWTPMYQLENIFDVFLPQLLRY 121

>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding Domain In Nedd8's E1 Length = 160

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 42  IIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDP 101
           +I P +  Y+ G F         YP  PP V+  + ++HPN+  +G VC++IL       
Sbjct: 40  VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILR------ 93
Query: 102 NGYELATERWTPVHTAASVWRSLS 125
                  E W PV T  S+   L 
Sbjct: 94  -------EDWKPVLTINSIIYGLQ 110

>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12 Length = 190

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 42  IIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDP 101
           I+ P +  Y  G  N  + F + YP+ PP V    +++HPN+   G VC++IL       
Sbjct: 69  IVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILR------ 122
Query: 102 NGYELATERWTPVHTAASVWRSL 124
                  E W+P     S+   L
Sbjct: 123 -------EDWSPALDLQSIITGL 138

>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 180

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 42  IIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDP 101
           +I P +  Y+ G F         YP  PP V+  + ++HPN+  +G V ++IL       
Sbjct: 60  VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILR------ 113
Query: 102 NGYELATERWTPVHTAASVWRSLS 125
                  E W PV T  S+   L 
Sbjct: 114 -------EDWKPVLTINSIIYGLQ 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	171
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	6e-67
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	4e-66
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	2e-64
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	2e-64
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	3e-51
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	2e-49
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	6e-49
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	6e-49
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	2e-48
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	4e-48
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	7e-48
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	4e-47
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	2e-46
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	5e-46
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	6e-45
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	7e-45
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	8e-45
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	8e-44
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	4e-43
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	8e-41
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	8e-41
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	3e-40
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	3e-40
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	6e-40
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	7e-40
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	8e-40
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	1e-39
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	2e-39
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	5e-39
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	8e-39
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	2e-38
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	2e-38
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	3e-38
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	4e-38
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	4e-38
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	5e-38
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	7e-38
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	4e-37
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	9e-37
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	2e-36
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	7e-36
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	3e-35
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	1e-33
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	2e-33
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	2e-32
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	8e-32
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	7e-31
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	1e-30
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	3e-30
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	2e-29
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	2e-05

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score =  201 bits (512), Expect = 6e-67
 Identities = 61/124 (49%), Positives = 80/124 (64%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           M    +   L  +LK L + PV+GF   LVDE +++ W V+I GPP+T YEGG+F A + 
Sbjct: 3   MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLK 62

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           FP +YP SPP  RF ++MWHPN+Y  G VCISILHPP DDP   EL +ERW P     ++
Sbjct: 63  FPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTI 122

Query: 121 WRSL 124
             S+
Sbjct: 123 LLSV 126

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score =  198 bits (506), Expect = 4e-66
 Identities = 69/121 (57%), Positives = 93/121 (76%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
            + SLLL++QL +L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +TFP 
Sbjct: 16  PRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPK 75

Query: 64  NYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRS 123
           +YP+ PP ++F +E+WHPNV  +G VCISILH PG+D  GYE   ERW P+HT  ++  S
Sbjct: 76  DYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMIS 135

Query: 124 L 124
           +
Sbjct: 136 V 136

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score =  194 bits (494), Expect = 2e-64
 Identities = 63/123 (51%), Positives = 80/123 (65%), Gaps = 1/123 (0%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           M+   A   L K+L+ L K+   G  AG   E+N+F W   I GPPDT Y  G FNA + 
Sbjct: 1   MS-KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLE 59

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           FP +YP+SPP + FT  + HPN+YP+G+VCISILH PGDDPN YELA ERW+PV +   +
Sbjct: 60  FPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKI 119

Query: 121 WRS 123
             S
Sbjct: 120 LLS 122

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score =  194 bits (494), Expect = 2e-64
 Identities = 64/120 (53%), Positives = 82/120 (68%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
             A   L  + K L  NP +G  AG ++E N FEW   I+GP DT +E G F AI++FP 
Sbjct: 2   GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPL 61

Query: 64  NYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRS 123
           +YP+SPP +RFT EM+HPN+YPDG+VCISILH PGDDP GYE + ERW+PV +   +  S
Sbjct: 62  DYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLS 121

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score =  160 bits (407), Expect = 3e-51
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 8/121 (6%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
           S    LL K++ +L  N          D + +  + +  + P +  Y+GG F      PD
Sbjct: 13  SVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQL-TVTPDEGYYQGGKFQFETEVPD 71

Query: 64  NYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRS 123
            Y + PP V+  +++WHPN+   G++C+S+L     D          W P  T   V   
Sbjct: 72  AYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDG-------TGWAPTRTLKDVVWG 124

Query: 124 L 124
           L
Sbjct: 125 L 125

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score =  155 bits (395), Expect = 2e-49
 Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 16/124 (12%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDES----NVFEWSVSIIGPPDTLYEGGFFN 56
           M+ S     LQ++ K   K+   GF A  V ++    ++ +W   I G   T + GG + 
Sbjct: 1   MS-SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYP 59

Query: 57  AIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHT 116
             + +P+ YP  PP V+F +  +HPNVYP G +C+SIL+             + W P  T
Sbjct: 60  ITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNED-----------QDWRPAIT 108

Query: 117 AASV 120
              +
Sbjct: 109 LKQI 112

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score =  155 bits (393), Expect = 6e-49
 Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 15/120 (12%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           M+ + A   L +  K + ++   G SA  + + NV  W+  IIGP DT YE G F  ++ 
Sbjct: 1   MS-TPARRRLMRDFKRMKEDAPPGVSASPLPD-NVMVWNAMIIGPADTPYEDGTFRLLLE 58

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           F + YP  PP V+F SEM+HPNVY +G++C+ IL               RWTP +  AS+
Sbjct: 59  FDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ-------------NRWTPTYDVASI 105

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  154 bits (392), Expect = 6e-49
 Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 13/122 (10%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
            +A LLL +   DL +N   G +A  V E ++ EW V I G  +++++G  F   + F  
Sbjct: 22  GRAYLLLHRDFCDLKENNYKGITAKPVSE-DMMEWEVEIEGLQNSVWQGLVFQLTIHFTS 80

Query: 64  NYPVSPPTVRFTSEMWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWR 122
            Y  +PP V+F +  +HPNV P  G+ CI  L  P           E+W   +T +S+  
Sbjct: 81  EYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNP-----------EKWNTNYTLSSILL 129

Query: 123 SL 124
           +L
Sbjct: 130 AL 131

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score =  153 bits (389), Expect = 2e-48
 Identities = 43/121 (35%), Positives = 57/121 (47%), Gaps = 15/121 (12%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDES----NVFEWSVSIIGPPDTLYEGGFFNAIM 59
           S     LQ++ K   ++   GF A     S    ++  W V I G P T +EGG +   M
Sbjct: 9   SLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTM 68

Query: 60  TFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAAS 119
            FP+ YP  PP  RFT  ++HPNVYP G VC+SIL+             E W P  T   
Sbjct: 69  AFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEE-----------EGWKPAITIKQ 117

Query: 120 V 120
           +
Sbjct: 118 I 118

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score =  152 bits (386), Expect = 4e-48
 Identities = 41/124 (33%), Positives = 55/124 (44%), Gaps = 16/124 (12%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDE----SNVFEWSVSIIGPPDTLYEGGFFN 56
           M+   A   L ++ K   K+   GF A          N+  W  +I G   T +EGG F 
Sbjct: 4   MS-GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 62

Query: 57  AIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHT 116
             M F D+YP SPP  +F   ++HPNVYP G VC+SIL              + W P  T
Sbjct: 63  LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED-----------KDWRPAIT 111

Query: 117 AASV 120
              +
Sbjct: 112 IKQI 115

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score =  151 bits (384), Expect = 7e-48
 Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 15/120 (12%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           M+ + A   L +  K L ++P  G S    D  N+  W+  I GP DT ++GG F   + 
Sbjct: 1   MS-TPARKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLSLQ 58

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           F ++YP  PPTVRF S M+HPN+Y DG +C+ IL               +W+P++  A++
Sbjct: 59  FSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAI 105

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score =  149 bits (379), Expect = 4e-47
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 16/124 (12%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           MA   AS  L K+L+++ K  +  F    VDE+N+  W   +I P +  Y+ G F   + 
Sbjct: 1   MA---ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQG-LIVPDNPPYDKGAFRIEIN 56

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           FP  YP  PP + F ++++HPN+   G+VC+ ++              E W P      V
Sbjct: 57  FPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISA------------ENWKPATKTDQV 104

Query: 121 WRSL 124
            +SL
Sbjct: 105 IQSL 108

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score =  148 bits (375), Expect = 2e-46
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 13/123 (10%)

Query: 2   AKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTF 61
               AS+ + K+L+DL K P         D++NV  W   ++ P    Y    FN  ++F
Sbjct: 1   GSHMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHA-LLLPDQPPYHLKAFNLRISF 59

Query: 62  PDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVW 121
           P  YP  PP ++FT++++HPNV  +G++C+ I+              E W P      V 
Sbjct: 60  PPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISS------------ENWKPCTKTCQVL 107

Query: 122 RSL 124
            +L
Sbjct: 108 EAL 110

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score =  147 bits (372), Expect = 5e-46
 Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 14/124 (11%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
             +   S  LQ++L+ L  +   G +A   D  N+F+W  ++ GP DT+YE   +   + 
Sbjct: 5   KERHSVSKRLQQELRTLLMSGDPGITAFP-DGDNLFKWVATLDGPKDTVYESLKYKLTLE 63

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           FP +YP  PP V+FT+  WHPNV   G +C+ IL              E WT  +   ++
Sbjct: 64  FPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILK-------------ENWTASYDVRTI 110

Query: 121 WRSL 124
             SL
Sbjct: 111 LLSL 114

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score =  143 bits (363), Expect = 6e-45
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 15/118 (12%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
             A+  +QK+L +  KNP    +   V  SN+  W V  +G  +T+Y    +   + FPD
Sbjct: 19  GNANYRIQKELNNFLKNPPINCTID-VHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPD 77

Query: 64  NYPVSPPTVRF-TSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           NYP+ PP V F      H +VY +G +C+S+L              + + P  + + +
Sbjct: 78  NYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLG-------------DDYNPSLSISGL 122

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score =  143 bits (362), Expect = 7e-45
 Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 15/118 (12%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
             A+  +QK+L +   NP    +   V  +N+  W V  +G  +T+Y    +   + FPD
Sbjct: 5   GNANYRIQKELHNFLNNPPINCTLD-VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPD 63

Query: 64  NYPVSPPTVRF-TSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           +YP+ PP V F      H +VY +G +C+S+L              + + P  + + +
Sbjct: 64  DYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLG-------------DDYNPSLSISGL 108

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score =  144 bits (366), Expect = 8e-45
 Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 14/120 (11%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
            A+      LQ++L  L  +   G SA    + N+F+W  +I G   T+YE   +   + 
Sbjct: 26  AARGPVGKRLQQELMTLMMSGDKGISAFPESD-NLFKWVGTIHGAAGTVYEDLRYKLSLE 84

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           FP  YP + PTV+F +  +HPNV   G + + IL              E+W+ ++   ++
Sbjct: 85  FPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILK-------------EKWSALYDVRTI 131

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score =  140 bits (356), Expect = 8e-44
 Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 16/120 (13%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVD-ESNVFEWSVSIIGPPDTLYEGGFFNAIMTFP 62
           +     LQK+L  L  +P  G +      ++++ +W V + G P TLYEG  F  +  F 
Sbjct: 21  ASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFS 80

Query: 63  DNYPVSPPTVRFTSEM--WHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
             YP   P V FT E    HP+VY +G +C+SIL              E W+P  +  SV
Sbjct: 81  SRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILT-------------EDWSPALSVQSV 127

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score =  139 bits (353), Expect = 4e-43
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 18/131 (13%)

Query: 1   MAKSQASLLLQKQLKDLCK-NPVDGFSAGLV--DESNVFEWSVSIIGPPDTLYEGGFFNA 57
                 S  L  +L+   K N  +G S GL   D+  +  WS +I G P T++E   ++ 
Sbjct: 17  QGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSL 76

Query: 58  IMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTA 117
            +   DNYP SPPTV+F +++    V   G+V  + LH             + W   +T 
Sbjct: 77  TIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHIL-----------KNWNRNYTI 125

Query: 118 A----SVWRSL 124
                S+ + +
Sbjct: 126 ETILISLRQEM 136

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score =  133 bits (337), Expect = 8e-41
 Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 14/115 (12%)

Query: 10  LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
           +QK+L+DL ++P    SAG V + ++F W  +I+GPP++ Y+GG F   + FP +YP  P
Sbjct: 9   IQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKP 67

Query: 70  PTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           P V FT+ ++HPN+  +G +C+ IL               +W+P  T + V  S+
Sbjct: 68  PKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 109

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  134 bits (339), Expect = 8e-41
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 10/123 (8%)

Query: 2   AKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTF 61
              Q +  L+++L  L   P  G +    D+  + +    I+G  +T YE G F   +  
Sbjct: 1   GSMQRASRLKRELHMLATEPPPGITCWQ-DKDQMDDLRAQILGGANTPYEKGVFKLEVII 59

Query: 62  PDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVW 121
           P+ YP  PP +RF + ++HPN+   G++C+ +L  P             W P    A+V 
Sbjct: 60  PERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKG---------AWRPSLNIATVL 110

Query: 122 RSL 124
            S+
Sbjct: 111 TSI 113

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score =  132 bits (335), Expect = 3e-40
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 26/137 (18%)

Query: 1   MAKSQASLLLQKQLKDLCK---------NPVDGF--SAGLVDESNVFEWSVSIIGPPDTL 49
           MA       + K+ K + K         NP  G   S   +DE+++ +W   I GP DT 
Sbjct: 3   MA-DTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTP 61

Query: 50  YEGGFFNAIMTFPDNYPVSPPTVRF-TSEMWHPNV-YPDGKVCISILHPPGDDPNGYELA 107
           YE   F  ++  P +YP++PP + F  + + H NV    G++C++IL P           
Sbjct: 62  YENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKP----------- 110

Query: 108 TERWTPVHTAASVWRSL 124
            E WTPV        ++
Sbjct: 111 -EEWTPVWDLLHCVHAV 126

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score =  132 bits (335), Expect = 3e-40
 Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 14/115 (12%)

Query: 10  LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
           + K+L DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP +YP  P
Sbjct: 24  IHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 82

Query: 70  PTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           P V FT+ ++HPN+  +G +C+ IL               +W+P  T + V  S+
Sbjct: 83  PKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSI 124

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score =  131 bits (332), Expect = 6e-40
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 14/117 (11%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
                L+ K++  L  +P DG      +E ++ +  V+I GP  T Y GG F   +    
Sbjct: 12  PHIIRLVYKEVTTLTADPPDGIKVFP-NEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGK 70

Query: 64  NYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           ++P SPP   F ++++HPNV  +G++C+++L                WT       V
Sbjct: 71  DFPASPPKGYFLTKIFHPNVGANGEICVNVLK-------------RDWTAELGIRHV 114

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score =  131 bits (332), Expect = 7e-40
 Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 26/135 (19%)

Query: 3   KSQASLLLQKQLKDL-----------CKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLY- 50
           K+ ++  + K LK L                   +   VD   ++ W + +  P D++Y 
Sbjct: 6   KNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYG 65

Query: 51  -EGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATE 109
             G  +   + F D+YP  PPTVRF + ++ P V  +G +C  +++             +
Sbjct: 66  GAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVN-------------D 112

Query: 110 RWTPVHTAASVWRSL 124
            WTP   A+ V + +
Sbjct: 113 FWTPDQHASDVIKLV 127

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score =  131 bits (331), Expect = 8e-40
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 14/116 (12%)

Query: 10  LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
           + K+++ +  +P    +   V ES++     + +GPP T YEGG F   +  P  YP  P
Sbjct: 6   IMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKP 65

Query: 70  PTVRFTSEMWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           P ++F ++++HPN+    G +C+ IL                W+PV T  S   SL
Sbjct: 66  PKMQFDTKVYHPNISSVTGAICLDILK-------------NAWSPVITLKSALISL 108

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score =  130 bits (330), Expect = 1e-39
 Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 14/115 (12%)

Query: 10  LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
           + K+L DL K+P    SAG V + ++F W  +I+GP D+ Y GG F   + FP +YP  P
Sbjct: 26  INKELNDLSKDPPTNCSAGPVGD-DMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKP 84

Query: 70  PTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           P V FT++++HPN+   G +C+ IL              ++W+P  T + V  S+
Sbjct: 85  PKVNFTTKIYHPNINSQGAICLDILK-------------DQWSPALTISKVLLSI 126

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score =  129 bits (326), Expect = 2e-39
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 16/128 (12%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDG-FSAGLV--DESNVFEWSVSIIGPPDTLYEGGFFNA 57
           M+K   +  L ++L+   K       S GL   D+  + +W+ +I+GPP + +E   ++ 
Sbjct: 2   MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSL 61

Query: 58  IMTFPDNYPVSPPTVRFTSEMWHPNVYPD-GKVCISILHPPGDDPNGYELATERWTPVHT 116
            +    NYP SPP V F S++  P V P  G+V                     W   +T
Sbjct: 62  SIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDF------------HTLRDWKRAYT 109

Query: 117 AASVWRSL 124
             ++   L
Sbjct: 110 METLLLDL 117

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score =  131 bits (330), Expect = 5e-39
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 14/116 (12%)

Query: 10  LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
           + K+++ +  +P    +   V ES++     + +GPP T YEGG F   +  P  YP  P
Sbjct: 7   IMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKP 66

Query: 70  PTVRFTSEMWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           P ++F ++++HPN+    G +C+ IL                W+PV T  S   SL
Sbjct: 67  PKMQFDTKVYHPNISSVTGAICLDILR-------------NAWSPVITLKSALISL 109

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score =  133 bits (336), Expect = 8e-39
 Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 15/131 (11%)

Query: 3   KSQASLLLQKQLKDLCKNPVDGFSAGL---VDESNVFEWSVSIIGPPDTLYEGGFFNAIM 59
            +  +  L ++   L  +     S+ +    DE  +    V I GP DT Y  G F   +
Sbjct: 74  SAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDV 133

Query: 60  TFPDNYPVSPPTVRFTS-----EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTP- 113
            FP +YP SPP V   +       ++PN+Y DGKVC+SIL+     P       E+W P 
Sbjct: 134 YFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPE------EKWNPQ 187

Query: 114 VHTAASVWRSL 124
             +   V  S+
Sbjct: 188 TSSFLQVLVSV 198

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score =  127 bits (322), Expect = 2e-38
 Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 14/115 (12%)

Query: 10  LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
           + K+ ++L   P  G  A  V E N   +++ I GP  T YEGG +   +  P+ YP+ P
Sbjct: 6   ITKETQNLANEPPPGIMAVPVPE-NYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEP 64

Query: 70  PTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           P VRF ++++HPN+   G++C+ IL              ++W+P     +V  S+
Sbjct: 65  PKVRFLTKIYHPNIDKLGRICLDILK-------------DKWSPALQIRTVLLSI 106

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score =  128 bits (323), Expect = 2e-38
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 16/121 (13%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
           S A L +QK + +L             D  ++  + + +I P +  Y+ G F        
Sbjct: 25  SAAQLRIQKDINELNLPK--TCDISFSDPDDLLNFKL-VICPDEGFYKSGKFVFSFKVGQ 81

Query: 64  NYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRS 123
            YP  PP V+  + ++HPN+  +G V ++IL              E W PV T  S+   
Sbjct: 82  GYPHDPPKVKCETMVYHPNIDLEGNVALNILR-------------EDWKPVLTINSIIYG 128

Query: 124 L 124
           L
Sbjct: 129 L 129

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score =  127 bits (321), Expect = 3e-38
 Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 17/124 (13%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           MA S A L +QK + +L             D  ++  + + +I P +  Y+ G F     
Sbjct: 3   MA-SAAQLRIQKDINELNLPK--TCDISFSDPDDLLNFKL-VICPDEGFYKSGKFVFSFK 58

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
               YP  PP V+  + ++HPN+  +G VC++IL              E W PV T  S+
Sbjct: 59  VGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSI 105

Query: 121 WRSL 124
              L
Sbjct: 106 IYGL 109

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score =  133 bits (336), Expect = 4e-38
 Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 14/117 (11%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
           + A   + K+L DL ++P    SAG V + ++F W  +I+GP D+ Y+GG F   + FP 
Sbjct: 2   AMALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPT 60

Query: 64  NYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASV 120
           +YP  PP V FT+ ++HPN+  +G + + IL               +W+P  T + V
Sbjct: 61  DYPFKPPKVAFTTRIYHPNINSNGSISLDILR-------------SQWSPALTISKV 104

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score =  128 bits (323), Expect = 4e-38
 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 14/115 (12%)

Query: 10  LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
           +QK+L D+  +P    SAG   + N++EW  +I+GPP ++YEGG F   +TF   YP  P
Sbjct: 53  IQKELADITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKP 111

Query: 70  PTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           P V F + ++H N+   G +C+ IL              + W+P  T + V  S+
Sbjct: 112 PKVTFRTRIYHCNINSQGVICLDILK-------------DNWSPALTISKVLLSI 153

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score =  126 bits (319), Expect = 5e-38
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 14/115 (12%)

Query: 10  LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
           + K+ + L   PV G  A   DESN   + V I GP D+ +EGG F   +  P+ YP++ 
Sbjct: 10  IIKETQRLLAEPVPGIKAEP-DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 68

Query: 70  PTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           P VRF ++++HPNV   G++C+ IL              ++W+P     +V  S+
Sbjct: 69  PKVRFMTKIYHPNVDKLGRICLDILK-------------DKWSPALQIRTVLLSI 110

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score =  126 bits (318), Expect = 7e-38
 Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 14/115 (12%)

Query: 10  LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
           + K+ + L  +PV G +A   D+ N+  + V+I GP  + YE G F   +  PD+YP+  
Sbjct: 10  IIKETEKLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA 68

Query: 70  PTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           P VRF ++++HPN+   G++C+ +L                W+P     +V  S+
Sbjct: 69  PKVRFLTKIYHPNIDRLGRICLDVLK-------------TNWSPALQIRTVLLSI 110

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score =  124 bits (314), Expect = 4e-37
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 21/129 (16%)

Query: 3   KSQASLLLQKQLKDLCKNPVDGFSAGLV---DESNVFEWSVSIIGPPDTLYEGGFFNAIM 59
           K   +  L ++L++  K   DG  +  +   ++  +  W+  IIGPP T+YE   ++  +
Sbjct: 33  KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKI 92

Query: 60  TFPDNYPVSPPTVRFTSEMWHPNVYPDGKV----CISILHPPGDDPNGYELATERWTPVH 115
                YP +PP VRF +++    V     V     IS+L               +W   +
Sbjct: 93  ECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA--------------KWQNSY 138

Query: 116 TAASVWRSL 124
           +   V + L
Sbjct: 139 SIKVVLQEL 147

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score =  123 bits (311), Expect = 9e-37
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 21/129 (16%)

Query: 3   KSQASLLLQKQLKDLCKNPVDGFSAGLV---DESNVFEWSVSIIGPPDTLYEGGFFNAIM 59
           K   +  L ++L++  K   DG  +  +   ++  +  W+  IIGPP T+YE   ++  +
Sbjct: 23  KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKI 82

Query: 60  TFPDNYPVSPPTVRFTSEMWHPNVYPDGKV----CISILHPPGDDPNGYELATERWTPVH 115
                YP +PP VRF +++    V     V     IS+L               +W   +
Sbjct: 83  ECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA--------------KWQNSY 128

Query: 116 TAASVWRSL 124
           +   V + L
Sbjct: 129 SIKVVLQEL 137

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score =  124 bits (314), Expect = 2e-36
 Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 15/122 (12%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
           S+  L LQK+LKD+    V    A + D  N FEW   I GP  T YEGG F   +T P+
Sbjct: 22  SKELLRLQKELKDIENENVQEIDAHIKDS-NFFEWVGFIKGPEGTPYEGGHFTLAITIPN 80

Query: 64  NYPVSPPTVRFTSEMWHPNVYPD-GKVCISILHPPGDDPNGYELATERWTPVHTAASVWR 122
           +YP +PP ++F +++WHPN+    G +C+ +L                W+P  T  +   
Sbjct: 81  DYPYNPPKIKFVTKIWHPNISSQTGAICLDVLK-------------NEWSPALTIRTALL 127

Query: 123 SL 124
           S+
Sbjct: 128 SI 129

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score =  122 bits (307), Expect = 7e-36
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 13/123 (10%)

Query: 2   AKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTF 61
           A + A+  L++    + K+PV    A     SN+ EW   + GP  T YEGG+++  + F
Sbjct: 11  APTTATQRLKQDYLRIKKDPVPYICAEP-LPSNILEWHYVVRGPEMTPYEGGYYHGKLIF 69

Query: 62  PDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVW 121
           P  +P  PP++       +     + ++C+SI               + W P  + +++ 
Sbjct: 70  PREFPFKPPSIYMI--TPNGRFKCNTRLCLSITDFHP----------DTWNPAWSVSTIL 117

Query: 122 RSL 124
             L
Sbjct: 118 TGL 120

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score =  120 bits (303), Expect = 3e-35
 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 18/125 (14%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVS----IIGPPDTLYEGGFFNAIM 59
           S A + L++ L  L   P    +     + +           I+ P +  Y  G  N  +
Sbjct: 28  SAARIRLKRDLDSLDLPPTVTLNVITSPD-SADRSQSPKLEVIVRPDEGYYNYGSINFNL 86

Query: 60  TFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAAS 119
            F + YP+ PP V    +++HPN+   G VC++IL              E W+P     S
Sbjct: 87  DFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILR-------------EDWSPALDLQS 133

Query: 120 VWRSL 124
           +   L
Sbjct: 134 IITGL 138

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score =  115 bits (290), Expect = 1e-33
 Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 15/123 (12%)

Query: 10  LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
           L ++  D  K  + G+   L +  +  ++ V   GP  T YEGG +   +T PD+YP + 
Sbjct: 4   LTRKQCDFTKLIMAGYDLELNNG-STQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFAS 62

Query: 70  PTVRFTSEMWHPNV-YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGV 128
           P++ F +++ HPNV    G VC+ +++             + WTP+++  +V+    P +
Sbjct: 63  PSIGFMNKLLHPNVDEASGSVCLDVIN-------------QTWTPLYSLVNVFEVFLPQL 109

Query: 129 LNY 131
           L Y
Sbjct: 110 LTY 112

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score =  115 bits (290), Expect = 2e-33
 Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 19/129 (14%)

Query: 1   MAKSQASLL-LQKQLKDLCKN---PVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFN 56
           MA +  ++  ++++ K++ K+     +     LVDE N  E    I GPPDT YEGG + 
Sbjct: 3   MAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDE-NFTELRGEIAGPPDTPYEGGRYQ 61

Query: 57  AIMTFPDNYPVSPPTVRFTSEMWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVH 115
             +  P+ YP +PP VRF +++WHPN+    G +C+ IL              ++W    
Sbjct: 62  LEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK-------------DQWAAAM 108

Query: 116 TAASVWRSL 124
           T  +V  SL
Sbjct: 109 TLRTVLLSL 117

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score =  113 bits (285), Expect = 2e-32
 Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 15/125 (12%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           +A  Q              +   G SA +V   ++  W   I GP  T YEGG F   + 
Sbjct: 41  LADIQQLQRAHDSEPAATHSTSHGVSAQIVGG-DIHRWRGFIAGPLGTPYEGGHFTLDIV 99

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYPD-GKVCISILHPPGDDPNGYELATERWTPVHTAAS 119
            P +YP +PP ++F +++WHPN+    G +C+ IL                W+P  T  +
Sbjct: 100 IPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILK-------------HEWSPALTIRT 146

Query: 120 VWRSL 124
              S+
Sbjct: 147 ALLSI 151

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score =  112 bits (281), Expect = 8e-32
 Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 19/128 (14%)

Query: 1   MAKSQASLLLQKQLKDLCKN---PVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNA 57
           MA + A   ++++ K++ K+     +     LVDE N  E    I GPPDT YEGG +  
Sbjct: 2   MA-NIAVQRIKREFKEVLKSEETSKNQIKVDLVDE-NFTELRGEIAGPPDTPYEGGRYQL 59

Query: 58  IMTFPDNYPVSPPTVRFTSEMWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHT 116
            +  P+ YP +PP VRF +++WHPN+    G +C+ IL              ++W    T
Sbjct: 60  EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK-------------DQWAAAMT 106

Query: 117 AASVWRSL 124
             +V  SL
Sbjct: 107 LRTVLLSL 114

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score =  109 bits (273), Expect = 7e-31
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 29/137 (21%)

Query: 4   SQASLLLQKQLKDLCKNPVDG---FSAGLVDESNVFEWSVSIIG-PPDTLYEGG------ 53
            QAS  L K+L+D+ ++       +S  L+++ ++++W V +    PD+           
Sbjct: 26  VQASDRLMKELRDIYRSQSYKTGIYSVELIND-SLYDWHVKLQKVDPDSPLHSDLQILKE 84

Query: 54  -----FFNAIMTFPDNYPVSPPTVRFTSEMWHPN-VYPDGKVCISILHPPGDDPNGYELA 107
                +     +F DN+P  PP VR    +     V   G +C+ +L   G         
Sbjct: 85  KEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQG--------- 135

Query: 108 TERWTPVHTAASVWRSL 124
              W+  ++  SV   +
Sbjct: 136 ---WSSAYSIESVIMQI 149

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score =  108 bits (272), Expect = 1e-30
 Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 19/123 (15%)

Query: 10  LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
           +   +  L ++  +    G      + E+ V   GP  T YEGG +   +  PD YP   
Sbjct: 30  MDTDVIKLIESKHEVTILG-----GLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKS 84

Query: 70  PTVRFTSEMWHPNV-YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGV 128
           P++ F ++++HPN+    G VC+ +++             + WT ++   +++ S  P +
Sbjct: 85  PSIGFMNKIFHPNIDEASGTVCLDVIN-------------QTWTALYDLTNIFESFLPQL 131

Query: 129 LNY 131
           L Y
Sbjct: 132 LAY 134

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score =  109 bits (274), Expect = 3e-30
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 18/125 (14%)

Query: 4   SQASLLLQKQLKDLCKNP---VDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           + A   ++++ K++ K+     +     LVDE N  E    I GPPDT YEGG +   + 
Sbjct: 56  NIAVQRIKREFKEVLKSEETSKNQIKVDLVDE-NFTELRGEIAGPPDTPYEGGRYQLEIK 114

Query: 61  FPDNYPVSPPTVRFTSEMWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAAS 119
            P+ YP +PP VRF +++WHPN+    G +C+ IL              ++W    T  +
Sbjct: 115 IPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK-------------DQWAAAMTLRT 161

Query: 120 VWRSL 124
           V  SL
Sbjct: 162 VLLSL 166

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score =  105 bits (263), Expect = 2e-29
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 16/132 (12%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMT 60
           M+ +      +++  D  +           D   V E+ V   GP  T YE G +   + 
Sbjct: 5   MSGAGNLRSNRRREMDYMRLCNSTRKVYPSD--TVAEFWVEFKGPEGTPYEDGTWMLHVQ 62

Query: 61  FPDNYPVSPPTVRFTSEMWHPNV-YPDGKVCISILHPPGDDPNGYELATERWTPVHTAAS 119
            P +YP   P++ F + + HPNV    G VC+ +++             + WTP++   +
Sbjct: 63  LPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVIN-------------QTWTPMYQLEN 109

Query: 120 VWRSLSPGVLNY 131
           ++    P +L Y
Sbjct: 110 IFDVFLPQLLRY 121

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Length = 146

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 40  VSIIGPPDTLYEGGFFNA--IMTFPDNYPVSPPTV--RFTSEMW---HPNVYPDGKVCIS 92
           +++ G     Y G  +N    +   D YP +PP    + TS M      +V  +GK+ + 
Sbjct: 54  MNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLP 113

Query: 93  ILH 95
            LH
Sbjct: 114 YLH 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	100.0
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	100.0
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.93
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.74
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.72
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.56
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	96.58
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	95.89
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	95.85
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	95.47
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	95.17
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	93.69
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	93.64
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	90.55

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=1.9e-45  Score=279.78  Aligned_cols=154  Identities=42%  Similarity=0.781  Sum_probs=142.9

Q ss_pred             CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCcc
Q 030794            1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH   80 (171)
Q Consensus         1 Ma~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   80 (171)
                      |+ +.+.+||++|+++|++++++|+++.+.+++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         1 M~-~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   79 (165)
T 2ucz_A            1 MS-KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILH   79 (165)
T ss_dssp             -C-HHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSC
T ss_pred             CC-hHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCcc
Confidence            77 68999999999999999999999999866899999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHH
Q 030794           81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCF  150 (171)
Q Consensus        81 pnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~  150 (171)
                      |||+.+|+||+++|+.++.+++|.+.+.++|+|+++|.+||++|+++|.+          ++.++.++..+|.+++++++
T Consensus        80 PNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~  159 (165)
T 2ucz_A           80 PNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSI  159 (165)
T ss_dssp             TTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             CCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHH
Confidence            99999999999999888888888888889999999999999999999976          33478889999999999999


Q ss_pred             Hhhhh
Q 030794          151 LSVHS  155 (171)
Q Consensus       151 ~~~~~  155 (171)
                      ++++.
T Consensus       160 ~~~~~  164 (165)
T 2ucz_A          160 LKSLG  164 (165)
T ss_dssp             HHHTT
T ss_pred             HHHhh
Confidence            88753

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=8e-45  Score=276.09  Aligned_cols=152  Identities=42%  Similarity=0.780  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCcc
Q 030794            4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV   83 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   83 (171)
                      +.|.+||++|+++|++++++|+++.+.+++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV   81 (164)
T 3h8k_A            2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI   81 (164)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence            57899999999999999999999999866699999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhh
Q 030794           84 YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSV  153 (171)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~  153 (171)
                      +.+|+||+++|++.+.++++.+.+.++|+|+++|.+||.+|+++|.+          ++.++.++..+|.++++++++++
T Consensus        82 ~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s  161 (164)
T 3h8k_A           82 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS  161 (164)
T ss_dssp             CTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence            99999999999988888999999999999999999999999999976          34478899999999999999987


Q ss_pred             hh
Q 030794          154 HS  155 (171)
Q Consensus       154 ~~  155 (171)
                      +.
T Consensus       162 ~~  163 (164)
T 3h8k_A          162 LG  163 (164)
T ss_dssp             HT
T ss_pred             hc
Confidence            64

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=1.1e-44  Score=279.93  Aligned_cols=158  Identities=41%  Similarity=0.805  Sum_probs=132.6

Q ss_pred             CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCcc
Q 030794            1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH   80 (171)
Q Consensus         1 Ma~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   80 (171)
                      ||++.+.+||++||++|++++++|+++.+.+++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         3 m~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   82 (183)
T 3rz3_A            3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWH   82 (183)
T ss_dssp             --CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCC
T ss_pred             CcchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCcc
Confidence            88899999999999999999999999996668899999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhc------cchhhHH
Q 030794           81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMN------AGYEYGN  144 (171)
Q Consensus        81 pnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~------~~~~~~~  144 (171)
                      |||+.+|+||+++|++.+.++++.+...++|+|+++|++||++|+++|.+          ++.++.+      +..+|.+
T Consensus        83 PnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~  162 (183)
T 3rz3_A           83 PNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTD  162 (183)
T ss_dssp             TTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHH
T ss_pred             CCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHH
Confidence            99999999999999877777888777789999999999999999999976          3346766      6788999


Q ss_pred             HHHHHHHhhhhhhh
Q 030794          145 TLHSCFLSVHSVAC  158 (171)
Q Consensus       145 ~~~~~~~~~~~~~~  158 (171)
                      +++++++++...+.
T Consensus       163 ~v~~~v~~s~~~~~  176 (183)
T 3rz3_A          163 IIRKQVLGTKVDAE  176 (183)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887654

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=1.6e-43  Score=270.12  Aligned_cols=142  Identities=34%  Similarity=0.629  Sum_probs=132.9

Q ss_pred             CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCcc
Q 030794            1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH   80 (171)
Q Consensus         1 Ma~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   80 (171)
                      |+ +.+.+||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         1 Ms-~~a~~RL~kEl~~l~~~~~~gi~~~p~-~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~H   78 (169)
T 1ayz_A            1 MS-TPARRRLMRDFKRMKEDAPPGVSASPL-PDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFH   78 (169)
T ss_dssp             -C-CHHHHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             CC-hHHHHHHHHHHHHHHhCCCCCEEEEec-CCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCcc
Confidence            65 689999999999999999999999997 8899999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHH
Q 030794           81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCF  150 (171)
Q Consensus        81 pnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~  150 (171)
                      |||+.+|.||+++|.             ++|+|+++|.+||.+|+++|.+          ++.++.++..+|.+++++++
T Consensus        79 PNI~~~G~ICl~iL~-------------~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~  145 (169)
T 1ayz_A           79 PNVYANGEICLDILQ-------------NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETV  145 (169)
T ss_dssp             TTBCTTSBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCCCCCeEeehhhc-------------cCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHH
Confidence            999999999999997             8899999999999999999976          34478889999999999999


Q ss_pred             Hhhhhhh
Q 030794          151 LSVHSVA  157 (171)
Q Consensus       151 ~~~~~~~  157 (171)
                      ++++...
T Consensus       146 ~~~a~~~  152 (169)
T 1ayz_A          146 EKSWEDD  152 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHcCCC
Confidence            9998753

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=3e-43  Score=264.20  Aligned_cols=139  Identities=30%  Similarity=0.599  Sum_probs=131.8

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCc
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN   82 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   82 (171)
                      ++.|.+||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   80 (151)
T 4gpr_A            2 AAMAMRRIQKELREIQQDPPCNCSAGPV-GDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPN   80 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEES-SSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEEc-CCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccce
Confidence            4678999999999999999999999996 789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHh
Q 030794           83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      |+.+|+||+++|.             ++|+|+++|.+||.+|+++|.+          ++.++.++..+|.+++++++++
T Consensus        81 v~~~G~iCl~iL~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~  147 (151)
T 4gpr_A           81 INKNGVICLDILK-------------DQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRM  147 (151)
T ss_dssp             BCTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ECCCCEEEccccc-------------CCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            9999999999997             8999999999999999999977          3448899999999999999999


Q ss_pred             hhh
Q 030794          153 VHS  155 (171)
Q Consensus       153 ~~~  155 (171)
                      +|.
T Consensus       148 ya~  150 (151)
T 4gpr_A          148 YAR  150 (151)
T ss_dssp             HCC
T ss_pred             hcC
Confidence            875

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=1.6e-43  Score=270.93  Aligned_cols=147  Identities=49%  Similarity=0.965  Sum_probs=114.2

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCc
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN   82 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   82 (171)
                      ++.+.+||++|+++|++++++||++.+.+++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus        15 ~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPN   94 (172)
T 2awf_A           15 VPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPN   94 (172)
T ss_dssp             CCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCC
Confidence            46789999999999999999999999986689999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCc----------HHHhhccch-hhHHHHHHH
Q 030794           83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY----------AWFLMNAGY-EYGNTLHSC  149 (171)
Q Consensus        83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~----------~~~~~~~~~-~~~~~~~~~  149 (171)
                      |+.+|+||+++|...+.++++++...++|+|+++|++||++|+++|.++          +.++.++.. +|.++|++|
T Consensus        95 V~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~  172 (172)
T 2awf_A           95 VDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC  172 (172)
T ss_dssp             BCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred             CCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence            9999999999998766677777777899999999999999999999763          336777777 787777764

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=4.3e-43  Score=263.60  Aligned_cols=140  Identities=32%  Similarity=0.686  Sum_probs=131.5

Q ss_pred             CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCcc
Q 030794            1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH   80 (171)
Q Consensus         1 Ma~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   80 (171)
                      |+ +.+.+||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         1 Ms-~~a~~RL~~E~~~l~~~~~~~i~~~~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   78 (152)
T 2aak_A            1 MS-TPARKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFH   78 (152)
T ss_dssp             CC-CHHHHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             CC-hHHHHHHHHHHHHHHhCCCCCEEEEeC-CCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence            65 688999999999999999999999986 8899999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHH
Q 030794           81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCF  150 (171)
Q Consensus        81 pnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~  150 (171)
                      |||+.+|.||+++|.             ++|+|+++|.+||.+|+++|.+          ++.++.++..+|.+++++++
T Consensus        79 Pnv~~~G~iCl~iL~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~  145 (152)
T 2aak_A           79 PNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVV  145 (152)
T ss_dssp             TTBCTTSBBCCGGGT-------------TSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEechhhc-------------CCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHH
Confidence            999999999999996             8899999999999999999976          33478889999999999999


Q ss_pred             Hhhhh
Q 030794          151 LSVHS  155 (171)
Q Consensus       151 ~~~~~  155 (171)
                      +++|.
T Consensus       146 ~~~a~  150 (152)
T 2aak_A          146 EQSWT  150 (152)
T ss_dssp             HHHCC
T ss_pred             HHHcc
Confidence            98874

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=5.8e-43  Score=264.45  Aligned_cols=138  Identities=25%  Similarity=0.446  Sum_probs=129.8

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCc
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN   82 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   82 (171)
                      +..+.+||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus        11 s~~~~~RL~kEl~~l~~~~~~gi~~~~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   89 (158)
T 1zdn_A           11 PPHIIRLVYKEVTTLTADPPDGIKVFPN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPN   89 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEEC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCEEEEEC-CCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCC
Confidence            4678999999999999999999999985 889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHh
Q 030794           83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      |+.+|+||+++|.             ++|+|+++|.+||.+|+++|.+          ++.++.++..+|.+++++++++
T Consensus        90 v~~~G~iCl~iL~-------------~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~  156 (158)
T 1zdn_A           90 VGANGEICVNVLK-------------RDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEI  156 (158)
T ss_dssp             BCTTSBBCHHHHT-------------TTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEehhhcC-------------CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            9999999999997             8999999999999999999976          3337888999999999999988


Q ss_pred             hh
Q 030794          153 VH  154 (171)
Q Consensus       153 ~~  154 (171)
                      +|
T Consensus       157 ~A  158 (158)
T 1zdn_A          157 HG  158 (158)
T ss_dssp             HC
T ss_pred             hC
Confidence            75

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=6.9e-43  Score=261.94  Aligned_cols=138  Identities=32%  Similarity=0.661  Sum_probs=129.8

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCc
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN   82 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   82 (171)
                      |+.+.+||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~~~~~~~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   80 (150)
T 1z2u_A            2 SHMALKRIQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN   80 (150)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCSSEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEEC-CCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCc
Confidence            4678999999999999999999999996 789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHh
Q 030794           83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      |+.+|+||+++|.             ++|+|+++|.+||.+|+++|.+          ++.++.++..+|.+++++++++
T Consensus        81 v~~~G~iCl~iL~-------------~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~  147 (150)
T 1z2u_A           81 INSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQK  147 (150)
T ss_dssp             BCTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEeecccc-------------CCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997             8999999999999999999976          3347888999999999999998


Q ss_pred             hh
Q 030794          153 VH  154 (171)
Q Consensus       153 ~~  154 (171)
                      +|
T Consensus       148 ~a  149 (150)
T 1z2u_A          148 YA  149 (150)
T ss_dssp             HC
T ss_pred             Hh
Confidence            76

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=8.9e-43  Score=265.31  Aligned_cols=137  Identities=34%  Similarity=0.672  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCcc
Q 030794            4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV   83 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   83 (171)
                      +.+.+||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus        20 ~~~~~RL~kEl~~l~~~~~~gi~~~~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI   98 (166)
T 2ayv_A           20 QGALKRINKELNDLSKDPPTNCSAGPV-GDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNI   98 (166)
T ss_dssp             TTHHHHHHHHHHHHHHSCCTTEEEEEC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEc-CCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcC
Confidence            468899999999999999999999996 7899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCc----------HHHhhccchhhHHHHHHHHHhh
Q 030794           84 YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY----------AWFLMNAGYEYGNTLHSCFLSV  153 (171)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~----------~~~~~~~~~~~~~~~~~~~~~~  153 (171)
                      +.+|.||+++|.             ++|+|+++|.+||.+|+++|.++          +.++.++..+|.++++++++++
T Consensus        99 ~~~G~ICL~iL~-------------~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~  165 (166)
T 2ayv_A           99 NSQGAICLDILK-------------DQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKY  165 (166)
T ss_dssp             CTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEccccc-------------ccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence            999999999997             89999999999999999999763          3478889999999999999887


Q ss_pred             h
Q 030794          154 H  154 (171)
Q Consensus       154 ~  154 (171)
                      |
T Consensus       166 A  166 (166)
T 2ayv_A          166 A  166 (166)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.5e-43  Score=265.45  Aligned_cols=138  Identities=28%  Similarity=0.462  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCcc
Q 030794            4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV   83 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   83 (171)
                      ..+.+||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         4 ~~~~~RL~kEl~~l~~~~~~~i~~~~~-~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   82 (154)
T 2c2v_B            4 AGLPRRIIKETQRLLAEPVPGIKAEPD-ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV   82 (154)
T ss_dssp             CSCCHHHHHHHHHHHHSCCTTEEEEEC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEEC-CCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcC
Confidence            567899999999999999999999986 7899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhh
Q 030794           84 YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSV  153 (171)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~  153 (171)
                      +.+|+||+++|.             ++|+|+++|.+||.+|+++|.+          ++.++.++..+|.++++++++++
T Consensus        83 ~~~G~iCl~iL~-------------~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~  149 (154)
T 2c2v_B           83 DKLGRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLY  149 (154)
T ss_dssp             CTTCBBCCHHHH-------------TSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEEchhcc-------------CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence            999999999997             8999999999999999999976          34478889999999999999998


Q ss_pred             hh
Q 030794          154 HS  155 (171)
Q Consensus       154 ~~  155 (171)
                      |.
T Consensus       150 a~  151 (154)
T 2c2v_B          150 AM  151 (154)
T ss_dssp             SS
T ss_pred             cC
Confidence            85

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=8.2e-43  Score=263.09  Aligned_cols=138  Identities=33%  Similarity=0.578  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCcc
Q 030794            4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV   83 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   83 (171)
                      +.+.+||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         8 ~~~~~RL~kEl~~l~~~~~~~i~~~p~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   86 (156)
T 2e2c_A            8 HSVSKRLQQELRTLLMSGDPGITAFPD-GDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNV   86 (156)
T ss_dssp             CCHHHHHHHHHHHHHHHCCTTEEEEES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEEC-CCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCC
Confidence            558999999999999999999999986 7899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhh
Q 030794           84 YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSV  153 (171)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~  153 (171)
                      +.+|.||+++|.             ++|+|+++|.+||.+|+++|.+          ++.++ ++..+|.++++++++++
T Consensus        87 ~~~G~iCl~iL~-------------~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~  152 (156)
T 2e2c_A           87 DQSGNICLDILK-------------ENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTA  152 (156)
T ss_dssp             CTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred             ccCceEECcccc-------------ccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHh
Confidence            999999999997             8999999999999999999976          33467 78899999999999998


Q ss_pred             hhh
Q 030794          154 HSV  156 (171)
Q Consensus       154 ~~~  156 (171)
                      ++.
T Consensus       153 ~~~  155 (156)
T 2e2c_A          153 QSD  155 (156)
T ss_dssp             HHC
T ss_pred             ccC
Confidence            763

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=1.5e-42  Score=263.91  Aligned_cols=139  Identities=32%  Similarity=0.643  Sum_probs=130.2

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCc
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN   82 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   82 (171)
                      .+.+.+||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus        17 ~~~~~~RL~kEl~~l~~~~~~gi~~~p~-~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPn   95 (165)
T 2c4o_A           17 GSMALKRIHKELNDLARDPPAQCSAGPV-GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN   95 (165)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCTTEEEEES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTT
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCEEEEEc-CCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCc
Confidence            3678999999999999999999999996 789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHh
Q 030794           83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      |+.+|+||+++|.             ++|+|+++|.+||.+|+++|.+          ++.++.++..+|.+++++++++
T Consensus        96 V~~~G~ICl~iL~-------------~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~  162 (165)
T 2c4o_A           96 INSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK  162 (165)
T ss_dssp             BCTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEeehhhc-------------CCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997             8999999999999999999976          3347888999999999999998


Q ss_pred             hhh
Q 030794          153 VHS  155 (171)
Q Consensus       153 ~~~  155 (171)
                      +|.
T Consensus       163 ~a~  165 (165)
T 2c4o_A          163 YAM  165 (165)
T ss_dssp             TTC
T ss_pred             HhC
Confidence            763

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=1.1e-42  Score=264.17  Aligned_cols=142  Identities=31%  Similarity=0.587  Sum_probs=129.7

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCC-C---CceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCC
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDE-S---NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM   78 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~-~---n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   78 (171)
                      |.+|++||++|+++|++++++|+++.+.++ +   |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus         8 ~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i   87 (163)
T 3rcz_B            8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPL   87 (163)
T ss_dssp             -CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCC
Confidence            468999999999999999999999998733 2   899999999999999999999999999999999999999999999


Q ss_pred             ccCccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHH
Q 030794           79 WHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHS  148 (171)
Q Consensus        79 ~HpnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~  148 (171)
                      |||||+.+|+||+++|..           .++|+|+++|.+||.+|+++|.+          ++.++.++..+|.+++++
T Consensus        88 ~HPnV~~~G~iCl~iL~~-----------~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~  156 (163)
T 3rcz_B           88 FHPNVYPSGTVCLSILNE-----------EEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRA  156 (163)
T ss_dssp             CSTTBCTTSBBCCGGGCT-----------TTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHH
T ss_pred             ccCCCCCCCcEeccccCC-----------CCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHH
Confidence            999999999999999962           24699999999999999999976          334788899999999999


Q ss_pred             HHHhhhh
Q 030794          149 CFLSVHS  155 (171)
Q Consensus       149 ~~~~~~~  155 (171)
                      +++++|.
T Consensus       157 ~~~~ya~  163 (163)
T 3rcz_B          157 QARENAP  163 (163)
T ss_dssp             HHHHTCC
T ss_pred             HHHHhCc
Confidence            9998873

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=9.1e-43  Score=261.05  Aligned_cols=135  Identities=26%  Similarity=0.501  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCCC
Q 030794            7 SLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPD   86 (171)
Q Consensus         7 ~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~   86 (171)
                      .+||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus         3 ~~RL~kEl~~l~~~~~~~i~~~~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~   81 (149)
T 2r0j_A            3 PRRITKETQNLANEPPPGIMAVPV-PENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL   81 (149)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEC-CCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCC
Confidence            589999999999999999999996 7899999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhhhh
Q 030794           87 GKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSVHS  155 (171)
Q Consensus        87 G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  155 (171)
                      |+||+++|.             ++|+|+++|.+||.+|+++|.+          ++.++.++..+|.++++++++++|.
T Consensus        82 G~iCl~iL~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~  147 (149)
T 2r0j_A           82 GRICLDILK-------------DKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYAN  147 (149)
T ss_dssp             CBBCCGGGT-------------TTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             CEEechhcC-------------CCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence            999999997             8999999999999999999976          3347888999999999999999875

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=9.6e-43  Score=262.99  Aligned_cols=143  Identities=27%  Similarity=0.489  Sum_probs=129.3

Q ss_pred             CchHHHHHHHHHHHHHHhhCCCCCeEEEecCC----CCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEec
Q 030794            1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDE----SNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS   76 (171)
Q Consensus         1 Ma~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~----~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   76 (171)
                      |+ +.+.+||++|+++|++++++|+++.+.+.    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus         1 Ms-~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   79 (157)
T 2gjd_A            1 MS-SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPA   79 (157)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCT
T ss_pred             CC-hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccC
Confidence            65 68999999999999999999999998632    48999999999999999999999999999999999999999999


Q ss_pred             CCccCccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHH
Q 030794           77 EMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTL  146 (171)
Q Consensus        77 ~i~HpnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~  146 (171)
                      ++|||||+.+|.||+++|+.           .++|+|+++|.+||.+|+++|.+          ++.++.++..+|.+++
T Consensus        80 ~i~HPnv~~~G~iCl~iL~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~  148 (157)
T 2gjd_A           80 GFYHPNVYPSGTICLSILNE-----------DQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV  148 (157)
T ss_dssp             TCCCTTBCTTSBBCCGGGCT-----------TTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHH
T ss_pred             CCccCCCCCCCcEeeecccC-----------CCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHH
Confidence            99999999999999999972           13799999999999999999976          3347888999999999


Q ss_pred             HHHHHhhhh
Q 030794          147 HSCFLSVHS  155 (171)
Q Consensus       147 ~~~~~~~~~  155 (171)
                      +++++++|.
T Consensus       149 ~~~~~~~a~  157 (157)
T 2gjd_A          149 LLQAKQYSK  157 (157)
T ss_dssp             HHHHHHTBC
T ss_pred             HHHHHHhcC
Confidence            999998873

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=7.3e-43  Score=261.54  Aligned_cols=137  Identities=27%  Similarity=0.514  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCC
Q 030794            6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP   85 (171)
Q Consensus         6 a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~   85 (171)
                      +.+||++|+++|++++++|+++.+.+++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~   81 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS   81 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence            46999999999999999999999975559999999999999999999999999999999999999999999999999998


Q ss_pred             -CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhhh
Q 030794           86 -DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSVH  154 (171)
Q Consensus        86 -~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~~  154 (171)
                       +|.||+++|.             ++|+|+++|.+||.+|+++|.+          ++.++.++..+|.++++++++++|
T Consensus        82 ~~G~iCl~iL~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a  148 (149)
T 1fxt_A           82 VTGAICLDILK-------------NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA  148 (149)
T ss_dssp             SSCCBCCHHHH-------------TSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHC
T ss_pred             CCCeEeCCcCC-------------CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence             9999999997             8999999999999999999966          344788899999999999999887


Q ss_pred             h
Q 030794          155 S  155 (171)
Q Consensus       155 ~  155 (171)
                      .
T Consensus       149 ~  149 (149)
T 1fxt_A          149 S  149 (149)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4e-42  Score=262.44  Aligned_cols=144  Identities=22%  Similarity=0.418  Sum_probs=132.7

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCc
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN   82 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   82 (171)
                      |.++.+||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~-~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN   80 (169)
T 1yh2_A            2 SMQRASRLKRELHMLATEPPPGITCWQD-KDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPN   80 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEeC-CCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCcccc
Confidence            5689999999999999999999999985 889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHh
Q 030794           83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      |+.+|.||+++|+...         .++|+|+++|.+||.+|+++|.+          ++.++.++..+|.++++++++.
T Consensus        81 v~~~G~iCl~iL~~~~---------~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~  151 (169)
T 1yh2_A           81 IDSAGRICLDVLKLPP---------KGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEK  151 (169)
T ss_dssp             BCTTCBBCCGGGSCTT---------TSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCcCCeEecccccCCc---------ccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            9999999999996321         27899999999999999999976          3347888899999999999999


Q ss_pred             hhhh
Q 030794          153 VHSV  156 (171)
Q Consensus       153 ~~~~  156 (171)
                      +|..
T Consensus       152 ~a~~  155 (169)
T 1yh2_A          152 HARQ  155 (169)
T ss_dssp             HSCC
T ss_pred             Hccc
Confidence            9874

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=3.4e-42  Score=260.48  Aligned_cols=139  Identities=29%  Similarity=0.535  Sum_probs=129.1

Q ss_pred             hHHHHHHHHHHHHHHhhC---CCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCc
Q 030794            3 KSQASLLLQKQLKDLCKN---PVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW   79 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~---~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   79 (171)
                      ++.+.+||++|+++|+++   ++.|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus         6 s~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   84 (159)
T 2bep_A            6 ANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW   84 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHCHHHHTTSEEEEEC-SSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCCEEEEeC-CCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence            368999999999999985   5789999996 779999999999999999999999999999999999999999999999


Q ss_pred             cCccCC-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHH
Q 030794           80 HPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHS  148 (171)
Q Consensus        80 HpnV~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~  148 (171)
                      ||||+. +|.||+++|.             ++|+|+++|.+||.+|+++|.+          ++.++.++..+|.+++++
T Consensus        85 HPni~~~~G~iCl~iL~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~  151 (159)
T 2bep_A           85 HPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARL  151 (159)
T ss_dssp             BTTBCTTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHH
T ss_pred             ccCCCCCCCEEeChhhh-------------ccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHH
Confidence            999995 9999999997             8899999999999999999976          334788899999999999


Q ss_pred             HHHhhhh
Q 030794          149 CFLSVHS  155 (171)
Q Consensus       149 ~~~~~~~  155 (171)
                      +++++|.
T Consensus       152 ~~~~~a~  158 (159)
T 2bep_A          152 WAHVYAG  158 (159)
T ss_dssp             HHHHHSC
T ss_pred             HHHHhhc
Confidence            9999874

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=1.5e-42  Score=261.42  Aligned_cols=138  Identities=25%  Similarity=0.464  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCcc
Q 030794            4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV   83 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   83 (171)
                      +.+.+||++|+++|++++++||++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         4 ~~~~~RL~kE~~~l~~~~~~~i~~~~~-~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   82 (155)
T 1jat_A            4 ASLPKRIIKETEKLVSDPVPGITAEPH-DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI   82 (155)
T ss_dssp             CSCCHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEEC-CCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCC
Confidence            457799999999999999999999986 7899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhh
Q 030794           84 YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSV  153 (171)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~  153 (171)
                      +.+|.||+++|.             ++|+|+++|.+||.+|+++|.+          ++.++.++..+|.++++++++++
T Consensus        83 ~~~G~iCl~iL~-------------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~  149 (155)
T 1jat_A           83 DRLGRICLDVLK-------------TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLY  149 (155)
T ss_dssp             CTTCCBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEchhhc-------------cCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence            999999999996             8999999999999999999966          44578889999999999999998


Q ss_pred             hh
Q 030794          154 HS  155 (171)
Q Consensus       154 ~~  155 (171)
                      |.
T Consensus       150 a~  151 (155)
T 1jat_A          150 AK  151 (155)
T ss_dssp             SE
T ss_pred             cc
Confidence            85

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=4e-42  Score=260.58  Aligned_cols=142  Identities=30%  Similarity=0.511  Sum_probs=130.1

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecC----CCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCC
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVD----ESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM   78 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~----~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   78 (171)
                      ++.+.+||++|+++|++++++|+.+.+.+    ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus         5 ~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i   84 (161)
T 2grr_A            5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPL   84 (161)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCc
Confidence            47899999999999999999999998862    36899999999999999999999999999999999999999999999


Q ss_pred             ccCccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHH
Q 030794           79 WHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHS  148 (171)
Q Consensus        79 ~HpnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~  148 (171)
                      |||||+.+|.||+++|..           .++|+|+++|.+||.+|+++|.+          ++.++.++..+|.+++++
T Consensus        85 ~HPnv~~~G~iCl~iL~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~  153 (161)
T 2grr_A           85 FHPNVYPSGTVCLSILEE-----------DKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRA  153 (161)
T ss_dssp             CSTTBCTTSBBCCGGGCT-----------TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHH
T ss_pred             ccCCCCCCCeEeehhcCC-----------CCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHH
Confidence            999999999999999961           14899999999999999999976          334788899999999999


Q ss_pred             HHHhhhh
Q 030794          149 CFLSVHS  155 (171)
Q Consensus       149 ~~~~~~~  155 (171)
                      +++++|.
T Consensus       154 ~~~~~a~  160 (161)
T 2grr_A          154 QAKKFAP  160 (161)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHhc
Confidence            9998874

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=6.1e-42  Score=268.01  Aligned_cols=141  Identities=30%  Similarity=0.543  Sum_probs=130.2

Q ss_pred             CchHHHHHHHHHHHHHHhhCC---CCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecC
Q 030794            1 MAKSQASLLLQKQLKDLCKNP---VDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE   77 (171)
Q Consensus         1 Ma~~~a~~Rl~~El~~l~~~~---~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   77 (171)
                      |+ +.|.+||++|+++|++++   +.||++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         2 Ms-~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~   79 (201)
T 3k9o_A            2 MA-NIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK   79 (201)
T ss_dssp             ---CTTHHHHHHHHHHHHTCHHHHTTSEEEEEC-STTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             Cc-HHHHHHHHHHHHHHHhCCCCCCCCEEEEEC-CCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccC
Confidence            55 678999999999999873   679999997 7899999999999999999999999999999999999999999999


Q ss_pred             CccCccCC-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHH
Q 030794           78 MWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTL  146 (171)
Q Consensus        78 i~HpnV~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~  146 (171)
                      +|||||+. +|.||+++|.             ++|+|+++|.+||.+|+++|.+          ++.++.++..+|.+++
T Consensus        80 i~HPnv~~~~G~iCl~iL~-------------~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a  146 (201)
T 3k9o_A           80 IWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTA  146 (201)
T ss_dssp             CCBTTBCTTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHH
T ss_pred             cccCCCcCCCCeeeCcccc-------------cCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHH
Confidence            99999995 9999999997             8999999999999999999977          3347899999999999


Q ss_pred             HHHHHhhhhh
Q 030794          147 HSCFLSVHSV  156 (171)
Q Consensus       147 ~~~~~~~~~~  156 (171)
                      +++++.+|..
T Consensus       147 ~~~~~~~a~~  156 (201)
T 3k9o_A          147 RLWAHVYAGA  156 (201)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHhccc
Confidence            9999999974

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=3.8e-42  Score=271.45  Aligned_cols=141  Identities=31%  Similarity=0.591  Sum_probs=131.8

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCc
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN   82 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   82 (171)
                      ++.+.+||++|+++|++++++||++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus        21 ~s~a~~RL~kEl~~l~~~~~~gi~~~p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPN   99 (216)
T 2pwq_A           21 GSKELLRLQKELKDIENENVQEIDAHIK-DSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPN   99 (216)
T ss_dssp             SCHHHHHHHHHHHHHHHSCTTTEEEEEC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             cCHHHHHHHHHHHHHHhCCCCCEEEEEc-CCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCC
Confidence            3679999999999999999999999997 789999999999999999999999999999999999999999999999999


Q ss_pred             cCC-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCc----------HHHhhccchhhHHHHHHHHH
Q 030794           83 VYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY----------AWFLMNAGYEYGNTLHSCFL  151 (171)
Q Consensus        83 V~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~----------~~~~~~~~~~~~~~~~~~~~  151 (171)
                      |+. +|.||+++|.             ++|+|+++|.+||.+|+++|.++          +.++.++..+|.++++++++
T Consensus       100 I~~~~G~ICL~iL~-------------~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~  166 (216)
T 2pwq_A          100 ISSQTGAICLDVLK-------------NEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTK  166 (216)
T ss_dssp             BCTTTCBBCCHHHH-------------HHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CcCCCCEEEchhhc-------------ccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence            995 9999999997             78999999999999999999763          33788899999999999999


Q ss_pred             hhhhhh
Q 030794          152 SVHSVA  157 (171)
Q Consensus       152 ~~~~~~  157 (171)
                      .+|...
T Consensus       167 ~ya~~~  172 (216)
T 2pwq_A          167 TFATGP  172 (216)
T ss_dssp             HHSCCC
T ss_pred             HhcCCC
Confidence            999743

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=5.2e-42  Score=263.84  Aligned_cols=138  Identities=25%  Similarity=0.451  Sum_probs=127.9

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCc
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN   82 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   82 (171)
                      ++.+.+||++||++|++++++||++.+. ++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++||||
T Consensus        28 ~~~~~~RL~kEl~~l~~~~~~gi~~~p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN  106 (179)
T 1i7k_A           28 RGPVGKRLQQELMTLMMSGDKGISAFPE-SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPN  106 (179)
T ss_dssp             --CHHHHHHHHHHHHHHHCCTTEEEEEE-TTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTT
T ss_pred             ChHHHHHHHHHHHHHHhCCCCCEEEEEc-CCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCc
Confidence            4668899999999999999999999986 789999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHh
Q 030794           83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      |+.+|+||+++|.             ++|+|+++|.+||.+|+++|.+          ++.++ ++..+|.+++++++++
T Consensus       107 V~~~G~ICL~iL~-------------~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~  172 (179)
T 1i7k_A          107 VDTQGNISLDILK-------------EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSK  172 (179)
T ss_dssp             BCTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHT
T ss_pred             cccCCeEEcccCc-------------CcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHH
Confidence            9999999999997             8999999999999999999966          33477 8889999999999988


Q ss_pred             hhh
Q 030794          153 VHS  155 (171)
Q Consensus       153 ~~~  155 (171)
                      ++.
T Consensus       173 ~~~  175 (179)
T 1i7k_A          173 QVT  175 (179)
T ss_dssp             TCC
T ss_pred             Hhc
Confidence            764

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=7.9e-42  Score=265.56  Aligned_cols=138  Identities=28%  Similarity=0.559  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHHhhCCC-------------CCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCC
Q 030794            4 SQASLLLQKQLKDLCKNPV-------------DGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPP   70 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~-------------~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP   70 (171)
                      ..+.+||++|+++|+++++             .||++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus        31 ~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP  109 (193)
T 2f4z_A           31 PREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIV-GGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPP  109 (193)
T ss_dssp             -CHHHHHHHHHHHHHHC----------------CEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred             CHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEc-CCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCC
Confidence            4578999999999999987             79999997 789999999999999999999999999999999999999


Q ss_pred             eeEEecCCccCccCC-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccc
Q 030794           71 TVRFTSEMWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAG  139 (171)
Q Consensus        71 ~v~f~t~i~HpnV~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~  139 (171)
                      +|+|.|++|||||+. +|.||+++|.             ++|+|+++|.+||++|+++|.+          ++.++.++.
T Consensus       110 ~V~F~T~i~HPNI~~~~G~ICL~iL~-------------~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~  176 (193)
T 2f4z_A          110 KMKFVTKIWHPNISSQTGAICLDILK-------------HEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENH  176 (193)
T ss_dssp             EEEESSCCCBTTBCTTTCBBCCGGGT-------------TTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCH
T ss_pred             eEEEecCCccCCCcCCCCEEECcccc-------------ccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCH
Confidence            999999999999995 9999999997             7899999999999999999976          344788999


Q ss_pred             hhhHHHHHHHHHhhhh
Q 030794          140 YEYGNTLHSCFLSVHS  155 (171)
Q Consensus       140 ~~~~~~~~~~~~~~~~  155 (171)
                      .+|.++++++++++|.
T Consensus       177 ~~f~~~ar~~t~~ya~  192 (193)
T 2f4z_A          177 PLFVQTAKLWTETFAK  192 (193)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHcc
Confidence            9999999999998874

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=1.7e-41  Score=263.94  Aligned_cols=137  Identities=31%  Similarity=0.593  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCcc
Q 030794            4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV   83 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   83 (171)
                      +.+.+||++||++|++++++||++.+. ++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++|||||
T Consensus        47 s~a~~RL~kEl~~l~~~~~~gi~~~p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV  125 (194)
T 3bzh_A           47 STSAKRIQKELADITLDPPPNCSAGPK-GDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNI  125 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCceeecc-cCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceE
Confidence            568999999999999999999999986 8899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCc----------HHHhhccchhhHHHHHHHHHhh
Q 030794           84 YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY----------AWFLMNAGYEYGNTLHSCFLSV  153 (171)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~----------~~~~~~~~~~~~~~~~~~~~~~  153 (171)
                      +.+|.|||++|.             ++|+|+++|.+||++|+++|.++          +.++.++..+|.++++++++++
T Consensus       126 ~~~G~ICL~iL~-------------~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~y  192 (194)
T 3bzh_A          126 NSQGVICLDILK-------------DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY  192 (194)
T ss_dssp             CTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCceechhhh-------------ccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence            999999999996             89999999999999999999763          3378889999999999999987


Q ss_pred             h
Q 030794          154 H  154 (171)
Q Consensus       154 ~  154 (171)
                      |
T Consensus       193 a  193 (194)
T 3bzh_A          193 A  193 (194)
T ss_dssp             C
T ss_pred             h
Confidence            6

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=2.8e-41  Score=257.25  Aligned_cols=144  Identities=23%  Similarity=0.446  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCcc
Q 030794            4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV   83 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   83 (171)
                      +.+.+||++|+++|++++++|+++.+.+++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus        13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv   91 (167)
T 3fn1_B           13 SVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI   91 (167)
T ss_dssp             CHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCC
Confidence            579999999999999999999999977678999999998 8999999999999999999999999999999999999999


Q ss_pred             CCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCc-----------HHHhhccchhhHHHHHHHHHh
Q 030794           84 YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY-----------AWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~-----------~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      +.+|+||+++|...       +...++|+|+++|.+||.+|+++|.+.           +.++.++..+|.+++++++++
T Consensus        92 ~~~G~iCl~iL~~~-------~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~  164 (167)
T 3fn1_B           92 TETGEICLSLLREH-------SIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKR  164 (167)
T ss_dssp             CTTCCBCCGGGSBC-------SSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCCEEechhhccC-------CCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            99999999999731       112358999999999999999999772           237888999999999999999


Q ss_pred             hhh
Q 030794          153 VHS  155 (171)
Q Consensus       153 ~~~  155 (171)
                      +|+
T Consensus       165 ~A~  167 (167)
T 3fn1_B          165 YAR  167 (167)
T ss_dssp             HCC
T ss_pred             hcC
Confidence            874

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=6.6e-41  Score=269.73  Aligned_cols=140  Identities=29%  Similarity=0.529  Sum_probs=130.7

Q ss_pred             hHHHHHHHHHHHHHHhhC---CCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCc
Q 030794            3 KSQASLLLQKQLKDLCKN---PVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW   79 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~---~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   79 (171)
                      ++.+.+||++||++|+++   ++.||++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus        55 s~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~-~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~  133 (253)
T 3e46_A           55 ANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW  133 (253)
T ss_dssp             CHHHHHHHHHHHHHHHHCHHHHTTSEEEEEC-STTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCEEEEEC-CCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCc
Confidence            378999999999999987   4689999997 789999999999999999999999999999999999999999999999


Q ss_pred             cCccCC-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCc----------HHHhhccchhhHHHHHH
Q 030794           80 HPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY----------AWFLMNAGYEYGNTLHS  148 (171)
Q Consensus        80 HpnV~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~----------~~~~~~~~~~~~~~~~~  148 (171)
                      ||||+. +|.||+++|.             ++|+|+++|.+||++|+++|.++          +.++.++..+|.+++++
T Consensus       134 HPNV~~~~G~ICL~iL~-------------~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~  200 (253)
T 3e46_A          134 HPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARL  200 (253)
T ss_dssp             BTTBCTTTCBBCCGGGT-------------TCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHH
T ss_pred             cCCccCCCCeeeccccc-------------CCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHH
Confidence            999995 9999999997             89999999999999999999773          34788999999999999


Q ss_pred             HHHhhhhh
Q 030794          149 CFLSVHSV  156 (171)
Q Consensus       149 ~~~~~~~~  156 (171)
                      |++.+|..
T Consensus       201 ~t~~yA~~  208 (253)
T 3e46_A          201 WAHVYAGA  208 (253)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHhccc
Confidence            99999974

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3e-41  Score=257.50  Aligned_cols=138  Identities=30%  Similarity=0.522  Sum_probs=124.4

Q ss_pred             CchHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCcc
Q 030794            1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH   80 (171)
Q Consensus         1 Ma~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   80 (171)
                      |+ +.+.+||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus        20 M~-~~a~~RL~kEl~~l~~~~~~gi~~~p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H   97 (169)
T 1yrv_A           20 MH-GRAYLLLHRDFCDLKENNYKGITAKPV-SEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFH   97 (169)
T ss_dssp             GG-CHHHHHHHHHHHHHHHHCCTTEEEEEC-STTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCC
T ss_pred             cC-hHHHHHHHHHHHHHHhCCCCCEEEEEc-CCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCcc
Confidence            44 689999999999999999999999986 7899999999999999999999999999999999999999999999999


Q ss_pred             Ccc-CCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHH
Q 030794           81 PNV-YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSC  149 (171)
Q Consensus        81 pnV-~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~  149 (171)
                      ||| +.+|+||+++|+.           .++|+|+++|.+||.+|+++|.+          ++.++.++..+|.++ +++
T Consensus        98 PNI~~~~G~ICL~iL~~-----------~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~  165 (169)
T 1yrv_A           98 PNVDPHTGQPCIDFLDN-----------PEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRL  165 (169)
T ss_dssp             TTBCTTTCCBCCHHHHC-----------GGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHH
T ss_pred             CcccCCCCeEeehhhcC-----------CcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHH
Confidence            999 7899999999951           26899999999999999999976          334778888888877 777


Q ss_pred             HHh
Q 030794          150 FLS  152 (171)
Q Consensus       150 ~~~  152 (171)
                      ++.
T Consensus       166 v~~  168 (169)
T 1yrv_A          166 FNR  168 (169)
T ss_dssp             HC-
T ss_pred             hhC
Confidence            653

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=6e-41  Score=252.63  Aligned_cols=137  Identities=29%  Similarity=0.559  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEE-EecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCcc
Q 030794            5 QASLLLQKQLKDLCKNPVDGFSA-GLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV   83 (171)
Q Consensus         5 ~a~~Rl~~El~~l~~~~~~~i~~-~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   83 (171)
                      .+.+||++|+++|++++++|+++ .+ +++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         4 ~~~~RL~kEl~~l~~~~~~~i~~~~~-~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV   81 (155)
T 1wzv_A            4 MASMRVVKELEDLQKKPPPYLRNLSS-DDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNV   81 (155)
T ss_dssp             -CHHHHHHHHHHHHHSCCTTEEEEEE-CSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEec-CCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcC
Confidence            47899999999999999999999 55 5889999999999 999999999999999999999999999999999999999


Q ss_pred             CCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhh
Q 030794           84 YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSV  153 (171)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~  153 (171)
                      +.+|.||+++|+            .++|+|+++|.+||.+|+++|.+          ++.++.++..+|.++++++++++
T Consensus        82 ~~~G~iCl~iL~------------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~  149 (155)
T 1wzv_A           82 DENGQICLPIIS------------SENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRF  149 (155)
T ss_dssp             CTTCBCCCGGGC------------TTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEeecCCC------------ccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999993            28999999999999999999976          34478889999999999999998


Q ss_pred             hh
Q 030794          154 HS  155 (171)
Q Consensus       154 ~~  155 (171)
                      |.
T Consensus       150 a~  151 (155)
T 1wzv_A          150 GV  151 (155)
T ss_dssp             CE
T ss_pred             cc
Confidence            86

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=2.4e-40  Score=253.28  Aligned_cols=143  Identities=24%  Similarity=0.409  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHhh-C-C------CC---CeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCee
Q 030794            4 SQASLLLQKQLKDLCK-N-P------VD---GFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTV   72 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~-~-~------~~---~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v   72 (171)
                      +.+.+||++|+++|++ + +      +.   ++.+.+.+++|+++|+++|.||++|||+||.|+++|.||++||++||+|
T Consensus         5 ~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v   84 (172)
T 2y9m_A            5 DTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKI   84 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred             HHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEE
Confidence            6799999999999998 5 3      33   4566774588999999999999999999999999999999999999999


Q ss_pred             EEec-CCccCccC-CCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhc-cc
Q 030794           73 RFTS-EMWHPNVY-PDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMN-AG  139 (171)
Q Consensus        73 ~f~t-~i~HpnV~-~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~-~~  139 (171)
                      +|.| ++|||||+ .+|.||+++|+            .++|+|+++|.+||.+|+++|.+          ++.++.+ +.
T Consensus        85 ~f~t~~i~HPni~~~~G~iCl~iL~------------~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~  152 (172)
T 2y9m_A           85 SFMQNNILHCNVKSATGEICLNILK------------PEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDM  152 (172)
T ss_dssp             EECTTSCCCTTEETTTTEECCGGGS------------TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCH
T ss_pred             EEeeCCeecCCCcCCCCEEeccccC------------CCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCH
Confidence            9999 99999995 79999999996            27899999999999999999976          3447888 88


Q ss_pred             hhhHHHHHHHHHhhhhhhh
Q 030794          140 YEYGNTLHSCFLSVHSVAC  158 (171)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~  158 (171)
                      .+|.++++++++.++..+.
T Consensus       153 ~~f~~~~~~~~~~~~~~~~  171 (172)
T 2y9m_A          153 SAYQGIVKYFLAERERINN  171 (172)
T ss_dssp             HHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHhhhc
Confidence            9999999999999877553

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=1.2e-41  Score=268.33  Aligned_cols=139  Identities=27%  Similarity=0.498  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccC
Q 030794            5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVY   84 (171)
Q Consensus         5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~   84 (171)
                      .+.+||++|+++|++++++||++.+.+++++++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~   81 (215)
T 1tte_A            2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS   81 (215)
T ss_dssp             TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence            46899999999999999999999997555677999999999999999999999999999999999999999999999999


Q ss_pred             C-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCc----------HHHhhccchhhHHHHHHHHHhh
Q 030794           85 P-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY----------AWFLMNAGYEYGNTLHSCFLSV  153 (171)
Q Consensus        85 ~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~----------~~~~~~~~~~~~~~~~~~~~~~  153 (171)
                      . +|.||+++|.             ++|+|++||.+||.+|+++|.++          +.++.++..+|.++++++++.+
T Consensus        82 ~~~G~ICL~iL~-------------~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~y  148 (215)
T 1tte_A           82 SVTGAICLDILR-------------NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLY  148 (215)
T ss_dssp             SSSSCCCSSTTT-------------CCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEECccCC-------------CCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence            9 9999999997             89999999999999999999773          3478889999999999999999


Q ss_pred             hhh
Q 030794          154 HSV  156 (171)
Q Consensus       154 ~~~  156 (171)
                      |..
T Consensus       149 A~~  151 (215)
T 1tte_A          149 ASE  151 (215)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            864

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=1.4e-40  Score=242.40  Aligned_cols=116  Identities=26%  Similarity=0.528  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCC-ccCc
Q 030794            4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM-WHPN   82 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpn   82 (171)
                      +.+.+||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||||
T Consensus         5 ~~a~~RL~kEl~~l~~~~~~~~~~~~~-~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn   83 (125)
T 2fo3_A            5 GNANYRIQKELHNFLNNPPINCTLDVH-PNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTH   83 (125)
T ss_dssp             ----CHHHHHHHHHHHSCCTTEEEEEC-TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEeC-cchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCc
Confidence            478899999999999999999999985 88999999999999999999999999999999999999999999996 9999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH
Q 030794           83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW  133 (171)
Q Consensus        83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~  133 (171)
                      |+.+|+||+++|.             ++|+|+++|++||.+|+++|.++..
T Consensus        84 v~~~G~iCl~iL~-------------~~W~P~~~i~~vl~si~~ll~~p~~  121 (125)
T 2fo3_A           84 VYSNGDICLSLLG-------------DDYNPSLSISGLVLSIISMLSSAKE  121 (125)
T ss_dssp             BCTTSBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHC----
T ss_pred             CCCCCEEEchhcC-------------CCCCCCCcHHHHHHHHHHHHhCccc
Confidence            9999999999997             8999999999999999999987654

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=1e-40  Score=251.15  Aligned_cols=139  Identities=27%  Similarity=0.521  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccC
Q 030794            5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVY   84 (171)
Q Consensus         5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~   84 (171)
                      .+.+||++|+++|++++++|+.+.+.+++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   80 (154)
T 1c4z_D            2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID   80 (154)
T ss_dssp             --CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             cHHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCC
Confidence            367999999999999999999877666889999999998 9999999999999999999999999999999999999999


Q ss_pred             CCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhhh
Q 030794           85 PDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSVH  154 (171)
Q Consensus        85 ~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~~  154 (171)
                      .+|.||+++|.            .++|+|+++|.+||.+|+++|.+          ++.++.++..+|.++++++++++|
T Consensus        81 ~~G~iCl~iL~------------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a  148 (154)
T 1c4z_D           81 EKGQVCLPVIS------------AENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYG  148 (154)
T ss_dssp             TTCBBCCTTTS------------SSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC-
T ss_pred             CCCEEECCCCC------------CCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence            99999999996            27899999999999999999966          344788899999999999999988


Q ss_pred             hh
Q 030794          155 SV  156 (171)
Q Consensus       155 ~~  156 (171)
                      ..
T Consensus       149 ~~  150 (154)
T 1c4z_D          149 EK  150 (154)
T ss_dssp             --
T ss_pred             cc
Confidence            63

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=7.1e-40  Score=247.99  Aligned_cols=133  Identities=28%  Similarity=0.498  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCcc
Q 030794            4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV   83 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   83 (171)
                      +.+.+||++|+++|  ++++|+++...+++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   81 (160)
T 1y8x_A            5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI   81 (160)
T ss_dssp             CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcC
Confidence            57899999999999  57889999843588999999998 9999999999999999999999999999999999999999


Q ss_pred             CCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHh
Q 030794           84 YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      +.+|.||+++|.             ++|+|+++|.+||.+|+++|.+          ++.++.++..+|.++++++++.
T Consensus        82 ~~~G~iCl~iL~-------------~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~  147 (160)
T 1y8x_A           82 DLEGNVCLNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG  147 (160)
T ss_dssp             CTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred             CCCCeEEcccch-------------hhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence            999999999997             8899999999999999999966          3447888999999999998875

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=9.5e-40  Score=241.24  Aligned_cols=115  Identities=29%  Similarity=0.566  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCC-ccCc
Q 030794            4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM-WHPN   82 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpn   82 (171)
                      +.+.+||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||||
T Consensus        19 ~~~~~RL~kEl~~l~~~~~~~~~~~~~-~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn   97 (136)
T 2h2y_A           19 GNANYRIQKELNNFLKNPPINCTIDVH-PSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTH   97 (136)
T ss_dssp             TSHHHHHHHHHHHHHHSCCTTEEEEEC-TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEEec-cccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCc
Confidence            468899999999999999999999985 88999999999999999999999999999999999999999999996 9999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcH
Q 030794           83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYA  132 (171)
Q Consensus        83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~  132 (171)
                      |+.+|+||+++|.             ++|+|+++|.+||.+|+++|.++.
T Consensus        98 v~~~G~ICl~iL~-------------~~WsP~~ti~~vL~si~sll~~p~  134 (136)
T 2h2y_A           98 VYSNGDICLSVLG-------------DDYNPSLSISGLILSIISMLSSAK  134 (136)
T ss_dssp             BCTTCCBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHSSSC
T ss_pred             CCCCCEEECcccc-------------CCCCCCCcHHHHHHHHHHHHhCcC
Confidence            9999999999997             899999999999999999987654

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.8e-39  Score=249.93  Aligned_cols=135  Identities=27%  Similarity=0.455  Sum_probs=123.3

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCc
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN   82 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   82 (171)
                      ++.+.+||++|+++|  ++++|+++...+++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus        24 ~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPN  100 (180)
T 2nvu_C           24 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN  100 (180)
T ss_dssp             CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred             ccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCC
Confidence            367899999999999  57889999843589999999998 999999999999999999999999999999999999999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHh
Q 030794           83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      |+.+|.||+++|.             ++|+|+++|.+||.+|+++|.+          ++.++.++..+|.++++++++.
T Consensus       101 V~~~G~iCl~iL~-------------~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~  167 (180)
T 2nvu_C          101 IDLEGNVALNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG  167 (180)
T ss_dssp             BCTTSBBCCGGGT-------------TSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHS
T ss_pred             CCCCCcEEccccc-------------ccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence            9999999999997             8899999999999999999976          3347888889999999998875


Q ss_pred             h
Q 030794          153 V  153 (171)
Q Consensus       153 ~  153 (171)
                      .
T Consensus       168 ~  168 (180)
T 2nvu_C          168 G  168 (180)
T ss_dssp             E
T ss_pred             C
Confidence            3

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=4e-40  Score=247.45  Aligned_cols=135  Identities=27%  Similarity=0.515  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccC
Q 030794            5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVY   84 (171)
Q Consensus         5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~   84 (171)
                      .+.+||++|+++|+++   |+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 sa~~Rl~kEl~~l~~~---~~~v~~~-~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~   77 (152)
T 2onu_A            2 TSLTRKQCDFTKLIMA---GYDLELN-NGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVD   77 (152)
T ss_dssp             -CCCHHHHTHHHHHHH---TCCEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             hHHHHHHHHHHhcCcC---CCEEEEc-cCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCc
Confidence            4678999999999874   7888886 78999999999999999999999999999999999999999999999999999


Q ss_pred             C-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHH-HHHhhcC----------cHHHhhccchhhHHHHHHHHHh
Q 030794           85 P-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRS-LSPGVLN----------YAWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        85 ~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~-i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      . +|.||+++|.             ++|+|+++|.+||.+ |++||.+          ++.++.++..+|.++++++++.
T Consensus        78 ~~~G~iCl~il~-------------~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~  144 (152)
T 2onu_A           78 EASGSVCLDVIN-------------QTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKL  144 (152)
T ss_dssp             TTTCBBCHHHHH-------------HHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CcCCeEeccccc-------------ccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            5 9999999997             889999999999999 6899865          4447888999999999999999


Q ss_pred             hhhh
Q 030794          153 VHSV  156 (171)
Q Consensus       153 ~~~~  156 (171)
                      +|..
T Consensus       145 ~a~~  148 (152)
T 2onu_A          145 YASK  148 (152)
T ss_dssp             HSCG
T ss_pred             hccC
Confidence            8864

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.4e-39  Score=239.01  Aligned_cols=110  Identities=36%  Similarity=0.682  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEE--ecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCc--cC
Q 030794            6 ASLLLQKQLKDLCKNPVDGFSAG--LVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW--HP   81 (171)
Q Consensus         6 a~~Rl~~El~~l~~~~~~~i~~~--~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--Hp   81 (171)
                      +.+||++|+++|++++++|+++.  + +++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|  ||
T Consensus        23 ~~~RL~kEl~~l~~~~~~gi~v~~~~-~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HP  101 (136)
T 2a7l_A           23 MQKRLQKELLALQNDPPPGMTLNEKS-VQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHP  101 (136)
T ss_dssp             SCHHHHHHHHHHHHSCCTTCCCCTTC-CCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEee-CccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCc
Confidence            34999999999999999999965  5 4889999999999999999999999999999999999999999999998  99


Q ss_pred             ccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhc
Q 030794           82 NVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVL  129 (171)
Q Consensus        82 nV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~  129 (171)
                      ||+.+|+||+++|.             ++|+|+++|++||++|+++|.
T Consensus       102 NV~~~G~ICL~iL~-------------~~WsP~~ti~~vL~sI~slL~  136 (136)
T 2a7l_A          102 HVYSNGHICLSILT-------------EDWSPALSVQSVCLSIISMLS  136 (136)
T ss_dssp             TBCTTCBBCCGGGT-------------TTCCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCeEEchhcC-------------CCCCCCCcHHHHHHHHHHHhC
Confidence            99999999999997             899999999999999999873

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.7e-40  Score=251.02  Aligned_cols=134  Identities=22%  Similarity=0.504  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccC
Q 030794            5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVY   84 (171)
Q Consensus         5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~   84 (171)
                      .+.+||++|+++|++   +|+++.+.  +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus        25 ~a~~RL~kEl~~l~~---~g~~v~~~--ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~   99 (179)
T 2z5d_A           25 PGKRRMDTDVIKLIE---SKHEVTIL--GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNID   99 (179)
T ss_dssp             HHHHHHHHHHHHHHH---SSSCEEEE--EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred             HHHHHHHHHHHhcCc---CCCEEEEC--CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCC
Confidence            689999999999985   57888885  4789999999999999999999999999999999999999999999999999


Q ss_pred             C-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHH-HHHhhcC----------cHHHhhccchhhHHHHHHHHHh
Q 030794           85 P-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRS-LSPGVLN----------YAWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        85 ~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~-i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      . +|.||+++|.             ++|+|+++|.+||.+ |+++|.+          ++.++.++..+|.+++++++++
T Consensus       100 ~~~G~ICL~iL~-------------~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~  166 (179)
T 2z5d_A          100 EASGTVCLDVIN-------------QTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQK  166 (179)
T ss_dssp             TTTCBBCHHHHH-------------HHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCCeEeccccc-------------cCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            9 9999999997             889999999999999 9999976          3447888999999999999999


Q ss_pred             hhhh
Q 030794          153 VHSV  156 (171)
Q Consensus       153 ~~~~  156 (171)
                      +|..
T Consensus       167 ~a~~  170 (179)
T 2z5d_A          167 YATE  170 (179)
T ss_dssp             HSSH
T ss_pred             Hccc
Confidence            9874

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=2.2e-39  Score=247.65  Aligned_cols=137  Identities=21%  Similarity=0.422  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccC
Q 030794            5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVY   84 (171)
Q Consensus         5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~   84 (171)
                      ++.+||++|+++|++++. ++   +. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus        12 ~~~~RL~~El~~l~~~~~-~v---~~-~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~   86 (171)
T 1yf9_A           12 RSNRRREMDYMRLCNSTR-KV---YP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVD   86 (171)
T ss_dssp             -CCHHHHHHHHHHHSSSS-CE---EE-CSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHhCCC-CC---CC-CCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCc
Confidence            578999999999999874 43   33 78999999999999999999999999999999999999999999999999999


Q ss_pred             C-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHH-HHhhcC----------cHHHhhccchhhHHHHHHHHHh
Q 030794           85 P-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL-SPGVLN----------YAWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        85 ~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i-~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      . +|.||+++|.             ++|+|+++|.+||.+| ++||.+          ++.++.++..+|.+++++++++
T Consensus        87 ~~~G~iCl~iL~-------------~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~  153 (171)
T 1yf9_A           87 ERSGSVCLDVIN-------------QTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVST  153 (171)
T ss_dssp             TTTCBBCHHHHH-------------HHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ccCCeEeccccc-------------cCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            5 9999999997             8899999999999997 788865          3447888999999999999999


Q ss_pred             hhhhhhh
Q 030794          153 VHSVACH  159 (171)
Q Consensus       153 ~~~~~~~  159 (171)
                      +|.....
T Consensus       154 ~a~~~~~  160 (171)
T 1yf9_A          154 HATPQKA  160 (171)
T ss_dssp             HCCHHHH
T ss_pred             HcChhhH
Confidence            9876443

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=1.1e-38  Score=236.06  Aligned_cols=119  Identities=29%  Similarity=0.450  Sum_probs=106.9

Q ss_pred             CchHHHHHHHHHHHHHHhhC-CCCCeEEEecCCC--CceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecC
Q 030794            1 MAKSQASLLLQKQLKDLCKN-PVDGFSAGLVDES--NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE   77 (171)
Q Consensus         1 Ma~~~a~~Rl~~El~~l~~~-~~~~i~~~~~~~~--n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   77 (171)
                      |++.++.+||++|+++|+++ +++|+++.+.+++  |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         2 m~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   81 (138)
T 1jat_B            2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK   81 (138)
T ss_dssp             -CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             cchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence            77778899999999999998 7889999986444  59999999999999999999999999999999999999999999


Q ss_pred             CccCccCCC-Cce--eeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH
Q 030794           78 MWHPNVYPD-GKV--CISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW  133 (171)
Q Consensus        78 i~HpnV~~~-G~i--Cl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~  133 (171)
                      +|||||+.+ |.|  |+++|              ++|+|+++|++||.+|+++|.++.+
T Consensus        82 i~HPnv~~~~G~i~~cL~~l--------------~~W~p~~~i~~vl~~i~~ll~~pn~  126 (138)
T 1jat_B           82 INLPCVNPTTGEVQTDFHTL--------------RDWKRAYTMETLLLDLRKEMATPAN  126 (138)
T ss_dssp             CCCTTBCTTTCBBCTTSHHH--------------HTCCTTCCHHHHHHHHHHHHTSHHH
T ss_pred             cccCCEeCCCCEEeeecccC--------------CCCCCcCcHHHHHHHHHHHHcCCCC
Confidence            999999996 999  99988              4799999999999999999987655

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=5.8e-38  Score=267.54  Aligned_cols=144  Identities=29%  Similarity=0.574  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCcc
Q 030794            4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV   83 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   83 (171)
                      +.|.+||++|+++|++++++|+++.|. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus         2 s~a~~RL~kEl~~l~~~~~~~~~~~p~-~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv   80 (399)
T 4ddg_A            2 AMALKRIHKELNDLARDPPAQCSAGPV-GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI   80 (399)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSEEEEEE-TTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEc-CCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeecccccccc
Confidence            578999999999999999999999997 8899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCc----------HHHhhccchhhHHHHHHHHHhh
Q 030794           84 YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY----------AWFLMNAGYEYGNTLHSCFLSV  153 (171)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~----------~~~~~~~~~~~~~~~~~~~~~~  153 (171)
                      +.+|.||+++|.             ++|+|+++|.+||.+|+++|.++          +.++.++..+|.++++++++++
T Consensus        81 ~~~G~iCl~il~-------------~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~  147 (399)
T 4ddg_A           81 NSNGSISLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY  147 (399)
T ss_dssp             CTTCBBCCGGGT-------------TSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEeCcccc-------------cCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence            999999999997             89999999999999999999773          3378899999999999999999


Q ss_pred             hhhhhhhH
Q 030794          154 HSVACHLM  161 (171)
Q Consensus       154 ~~~~~~~~  161 (171)
                      |......-
T Consensus       148 a~~~v~~D  155 (399)
T 4ddg_A          148 AMGGSAYD  155 (399)
T ss_dssp             TSCTTHHH
T ss_pred             hccccchh
Confidence            87654443

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=7.2e-38  Score=236.71  Aligned_cols=119  Identities=26%  Similarity=0.436  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHhhCCCCC-eEEEecCCCC--ceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCcc
Q 030794            4 SQASLLLQKQLKDLCKNPVDG-FSAGLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH   80 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~-i~~~~~~~~n--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   80 (171)
                      .++.+||++|+++|++++++| +++.+.+++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus        24 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H  103 (160)
T 2a4d_A           24 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM  103 (160)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             chHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCcee
Confidence            578999999999999999988 7787755665  8999999999999999999999999999999999999999999999


Q ss_pred             CccC-CCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH
Q 030794           81 PNVY-PDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW  133 (171)
Q Consensus        81 pnV~-~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~  133 (171)
                      |||+ .+|+||+++|..           .++|+|+++|++||++|+++|.+.++
T Consensus       104 PNV~~~~G~ICl~iL~~-----------~~~WsP~~ti~~vL~sI~~ll~~~pn  146 (160)
T 2a4d_A          104 NGVNSSNGVVDPRAISV-----------LAKWQNSYSIKVVLQELRRLMMSKEN  146 (160)
T ss_dssp             TTBCTTTCBBCGGGSHH-----------HHTCCTTCCHHHHHHHHHHHHTSTTT
T ss_pred             CCEECCCCEEehhhcCC-----------ccCCCccCcHHHHHHHHHHHHccCCC
Confidence            9999 599999999841           16899999999999999999976443

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=7.5e-38  Score=242.78  Aligned_cols=134  Identities=25%  Similarity=0.428  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEe---cCCCCce---EEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecC
Q 030794            4 SQASLLLQKQLKDLCKNPVDGFSAGL---VDESNVF---EWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE   77 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~i~~~~---~~~~n~~---~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   77 (171)
                      +.+.+||++||++|+  +++|+++..   .+++|++   +|+++|. |++|||+||.|+++|.||++||++||+|+|.|+
T Consensus        28 s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~  104 (190)
T 3o2u_A           28 SAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKK  104 (190)
T ss_dssp             CHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSC
T ss_pred             cHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecC
Confidence            678999999999998  678999982   3589999   9999997 888999999999999999999999999999999


Q ss_pred             CccCccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHH
Q 030794           78 MWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLH  147 (171)
Q Consensus        78 i~HpnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~  147 (171)
                      +|||||+.+|.||+++|.             ++|+|+++|.+||.+|+++|.+          ++.++.++..+|.++++
T Consensus       105 i~HPnV~~~G~iCl~iL~-------------~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar  171 (190)
T 3o2u_A          105 IFHPNIDLKGNVCLNILR-------------EDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR  171 (190)
T ss_dssp             CCCTTBCTTSBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHH
T ss_pred             cccCCCCCCCeEechhcc-------------CCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHH
Confidence            999999999999999997             8999999999999999999976          33478889999999999


Q ss_pred             HHHHhh
Q 030794          148 SCFLSV  153 (171)
Q Consensus       148 ~~~~~~  153 (171)
                      ++++..
T Consensus       172 ~~~~~~  177 (190)
T 3o2u_A          172 LTMSGG  177 (190)
T ss_dssp             HHHBTC
T ss_pred             HHHHhc
Confidence            998654

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=8.2e-38  Score=235.67  Aligned_cols=117  Identities=31%  Similarity=0.475  Sum_probs=107.7

Q ss_pred             hHHHHHHHHHHHHHHhhC-CCCCeEEEecCCC--CceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCc
Q 030794            3 KSQASLLLQKQLKDLCKN-PVDGFSAGLVDES--NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW   79 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~-~~~~i~~~~~~~~--n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   79 (171)
                      +.++.+||++|+++|+++ +++|+++.+.+++  |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus        19 ~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~   98 (156)
T 2q0v_A           19 IVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIE   98 (156)
T ss_dssp             CCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             cchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccc
Confidence            356889999999999998 7889999986443  5999999999999999999999999999999999999999999999


Q ss_pred             cCccCCCCce---eeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH
Q 030794           80 HPNVYPDGKV---CISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW  133 (171)
Q Consensus        80 HpnV~~~G~i---Cl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~  133 (171)
                      ||||+.+|+|   |+++|.              .|+|+++|++||++|+++|.++.+
T Consensus        99 HPNV~~~G~icisCL~iL~--------------~WsP~~ti~~vL~sI~~ll~~Pn~  141 (156)
T 2q0v_A           99 MSCVDNCGRVIKNNLHILK--------------NWNRNYTIETILISLRQEMLSSAN  141 (156)
T ss_dssp             CTTBCTTSBBCGGGSHHHH--------------TCCTTCCHHHHHHHHHHHTTSTTT
T ss_pred             cCCCccCCeEehhhccccc--------------CCCCcCcHHHHHHHHHHHHhCCCC
Confidence            9999999999   889884              499999999999999999987544

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=6.8e-38  Score=238.59  Aligned_cols=132  Identities=23%  Similarity=0.484  Sum_probs=115.1

Q ss_pred             CchHHHHHHHHHHHHHHhhCC------------CCCeEEEecCCCCceEEEEEEECCCCCCCC--CcEEEEEEEcCCCCC
Q 030794            1 MAKSQASLLLQKQLKDLCKNP------------VDGFSAGLVDESNVFEWSVSIIGPPDTLYE--GGFFNAIMTFPDNYP   66 (171)
Q Consensus         1 Ma~~~a~~Rl~~El~~l~~~~------------~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~--gg~f~~~i~fp~~YP   66 (171)
                      |+ +.+.+||++|+++|++++            +.++.+.+. ++|+++|+++|.||++|||+  ||.|+++|.||++||
T Consensus         5 Ms-~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP   82 (167)
T 4ds2_A            5 MK-NISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVD-TDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYP   82 (167)
T ss_dssp             CC-CCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEE-ESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTT
T ss_pred             cc-HHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeC-CCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCC
Confidence            55 578999999999999987            678999885 88999999999999999999  999999999999999


Q ss_pred             CCCCeeEEecCCccCccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHH-HHHHhhcC------------cHH
Q 030794           67 VSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWR-SLSPGVLN------------YAW  133 (171)
Q Consensus        67 ~~pP~v~f~t~i~HpnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~-~i~~ll~~------------~~~  133 (171)
                      ++||+|+|.|++|||||+.+|.||+++|.             ++|+|++++.++|+ .|++++..            ++.
T Consensus        83 ~~pP~v~f~t~i~HPnv~~~G~iCl~il~-------------~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~  149 (167)
T 4ds2_A           83 HEPPTVRFVTPVYSPLVTGEGGICDRMVN-------------DFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARH  149 (167)
T ss_dssp             TSCCEEEESSCCCCSSCCTTSCCCTHHHH-------------TTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHH
T ss_pred             CCCCEEEEeCCcccccCCCCCEEEcccCc-------------CCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHH
Confidence            99999999999999999999999999997             89999999999765 56666643            333


Q ss_pred             HhhccchhhHHHHH
Q 030794          134 FLMNAGYEYGNTLH  147 (171)
Q Consensus       134 ~~~~~~~~~~~~~~  147 (171)
                      ++.++..+|.++++
T Consensus       150 l~~~d~~~f~~~vr  163 (167)
T 4ds2_A          150 YLEKFPQDFAARVR  163 (167)
T ss_dssp             HHHHCHHHHHHHHT
T ss_pred             HHHHCHHHHHHHHh
Confidence            56666666666665

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=100.00  E-value=6.9e-38  Score=242.21  Aligned_cols=138  Identities=21%  Similarity=0.391  Sum_probs=121.2

Q ss_pred             chHHHHHHHHHHHHHHhhCC---CCCeEEEecCCCCceEEEEEEECC-CCCCCCC-----------cEEEEEEEcCCCCC
Q 030794            2 AKSQASLLLQKQLKDLCKNP---VDGFSAGLVDESNVFEWSVSIIGP-PDTLYEG-----------GFFNAIMTFPDNYP   66 (171)
Q Consensus         2 a~~~a~~Rl~~El~~l~~~~---~~~i~~~~~~~~n~~~w~~~i~Gp-~~tpy~g-----------g~f~~~i~fp~~YP   66 (171)
                      ++..+.+||++||++|++++   +.++++.+. ++|+++|+++|.|| ++|||+|           |.|+++|.||++||
T Consensus        24 ~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~-~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP  102 (186)
T 1zuo_A           24 GSVQASDRLMKELRDIYRSQSYKTGIYSVELI-NDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFP  102 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEE-TTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTT
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEc-CCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCC
Confidence            34789999999999999998   688999987 78999999999997 9999998           89999999999999


Q ss_pred             CCCCeeEEecCCccC-ccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH--HhhccchhhH
Q 030794           67 VSPPTVRFTSEMWHP-NVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW--FLMNAGYEYG  143 (171)
Q Consensus        67 ~~pP~v~f~t~i~Hp-nV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~--~~~~~~~~~~  143 (171)
                      ++||+|+|.|++||| ||+.+|.|||++|.            .++|+|+++|++||++|+++|.++++  .+..+..+|.
T Consensus       103 ~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~------------~~~WsP~~ti~~VL~sI~slL~~p~a~~~~~~~~~~Y~  170 (186)
T 1zuo_A          103 FDPPFVRVVLPVLSGGYVLGGGALCMELLT------------KQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYN  170 (186)
T ss_dssp             SSCCEEEEEESCEESTTBCGGGBBCCGGGS------------TTTCCTTSCHHHHHHHHHHHHHHTTCEECTTCCTTCCC
T ss_pred             CCCCeEEEeCCccCCCccCCCCcEEeccCC------------CCCCCCcCcHHHHHHHHHHHHcCCChhHhhccCHHHHh
Confidence            999999999999999 69999999999996            27899999999999999999977444  3444556777


Q ss_pred             HHHHHHHHh
Q 030794          144 NTLHSCFLS  152 (171)
Q Consensus       144 ~~~~~~~~~  152 (171)
                      +.++.++.+
T Consensus       171 ~~~~~~~~~  179 (186)
T 1zuo_A          171 LARAQQSYN  179 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            766665544

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=100.00  E-value=2e-36  Score=250.28  Aligned_cols=147  Identities=27%  Similarity=0.385  Sum_probs=125.9

Q ss_pred             chHHHHHHHHHHHHHHhhCCCCC----eEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecC
Q 030794            2 AKSQASLLLQKQLKDLCKNPVDG----FSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE   77 (171)
Q Consensus         2 a~~~a~~Rl~~El~~l~~~~~~~----i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   77 (171)
                      +++.+.+||++|+++|++++++|    +.+.+. ++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+
T Consensus        73 ~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~-ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~  151 (323)
T 3ceg_A           73 NSAARARRLAQEAVTLSTSLPLSSSSSVFVRCD-EERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETT  151 (323)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEE-SSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCS
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCcccceeeccc-CCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEecc
Confidence            35789999999999999998875    445564 8899999999999999999999999999999999999999999999


Q ss_pred             -----CccCccCCCCceeeccCCCCCCCCCCCCCCCCCCCccC-cHHHHHHHHHHhhcCcH--------------HHhhc
Q 030794           78 -----MWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVH-TAASVWRSLSPGVLNYA--------------WFLMN  137 (171)
Q Consensus        78 -----i~HpnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~-~l~~il~~i~~ll~~~~--------------~~~~~  137 (171)
                           +|||||+.+|+|||++|+.+.+      ...++|+|++ +|.+||++|++||.+..              .++.+
T Consensus       152 ~g~~~ifHPNV~~~G~ICLsiL~~~~g------~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~  225 (323)
T 3ceg_A          152 GGHSVRFNPNLYNDGKVCLSILNTWHG------RPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQ  225 (323)
T ss_dssp             TTTTCCCBTTBCTTCBBCCGGGTSSCC------CGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHH
T ss_pred             CCCcccccCCCCcCCeEechhhccccC------CCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhh
Confidence                 9999999999999999963211      2236899999 89999999999996322              23455


Q ss_pred             cchhhHHHHHHHHHhhhh
Q 030794          138 AGYEYGNTLHSCFLSVHS  155 (171)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~  155 (171)
                      +..+|.++++.+++++|.
T Consensus       226 d~~~Y~~~vr~~t~k~A~  243 (323)
T 3ceg_A          226 SSREYDGNIRQATVKWAM  243 (323)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHhh
Confidence            677888999999988764

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=2.4e-37  Score=236.04  Aligned_cols=119  Identities=26%  Similarity=0.436  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHHHhhCCCCC-eEEEecCCCC--ceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCcc
Q 030794            4 SQASLLLQKQLKDLCKNPVDG-FSAGLVDESN--VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH   80 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~-i~~~~~~~~n--~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   80 (171)
                      .++.+||++|+++|++++++| +++.+.+++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus        34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H  113 (170)
T 2hlw_A           34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM  113 (170)
T ss_dssp             CCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence            468999999999999999888 6777755654  9999999999999999999999999999999999999999999999


Q ss_pred             CccC-CCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH
Q 030794           81 PNVY-PDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW  133 (171)
Q Consensus        81 pnV~-~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~  133 (171)
                      |||+ .+|+||+++|+.           .++|+|+++|++||++|+++|.+.++
T Consensus       114 PNV~~~~G~ICl~iL~~-----------~~~WsP~~ti~~vL~sI~~ll~~~pn  156 (170)
T 2hlw_A          114 NGVNSSNGVVDPRAISV-----------LAKWQNSYSIKVVLQELRRLMMSKEN  156 (170)
T ss_dssp             SSBCSSSCBBCTTTCHH-----------HHTCCSSCCHHHHHHHHHHHHHSTTT
T ss_pred             CCEeCCCCEEEhhhcCC-----------CCCCCccCcHHHHHHHHHHHHccCCC
Confidence            9999 699999998841           16899999999999999999976433

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.8e-36  Score=232.09  Aligned_cols=118  Identities=24%  Similarity=0.520  Sum_probs=102.1

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCc
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN   82 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   82 (171)
                      ++.+.+||++|+++|++++++||++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+  |||
T Consensus        12 ~~~a~~RL~kEl~~l~~~~~~~i~~~p~-~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~   88 (187)
T 2f4w_A           12 PTTATQRLKQDYLRIKKDPVPYICAEPL-PSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGR   88 (187)
T ss_dssp             --CHHHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSS
T ss_pred             ccHHHHHHHHHHHHHHhCCCCCEEEEEc-CCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cce
Confidence            3568899999999999999999999986 8899999999999999999999999999999999999999999999  999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH
Q 030794           83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW  133 (171)
Q Consensus        83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~  133 (171)
                      |+.+|+||+++|+.          +.+.|+|+++|.+||.+|+++|.++.+
T Consensus        89 ~~~~G~ICL~iL~~----------~~~~W~P~~ti~~vL~si~sll~~p~p  129 (187)
T 2f4w_A           89 FKCNTRLCLSITDF----------HPDTWNPAWSVSTILTGLLSFMVEKGP  129 (187)
T ss_dssp             BCTTSCBC--------------------CCTTCCHHHHHHHHHHHHHSCCC
T ss_pred             eccCCeEeeecccc----------CccCCCCcCcHHHHHHHHHHHhcCCCC
Confidence            99999999999941          128899999999999999999987665

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.93  E-value=5e-28  Score=181.53  Aligned_cols=99  Identities=17%  Similarity=0.238  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCc----------EEEEEEEcCCCCCCCCCeeEE
Q 030794            5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGG----------FFNAIMTFPDNYPVSPPTVRF   74 (171)
Q Consensus         5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f   74 (171)
                      ...+||++|++.|.+      ++.+. .+|++.|.+.+.||++|+|+||          .|.+++.||++||.+||+|+|
T Consensus        32 ~w~~RL~eE~k~L~k------~v~p~-k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F  104 (172)
T 2z6o_A           32 LWVQRLKEEYQSLIR------YVENN-KNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAV  104 (172)
T ss_dssp             HHHHHHHHHHHHHHH------HHHHH-HHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred             HHHHHHHHHHHHHHH------HhccC-ccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeee
Confidence            349999999999998      35554 6799999999999999999999          999999999999999999999


Q ss_pred             ecC-CccCccCCCCceeeccCCCCCCCCCCCCCCCC---CCCccCcHHHHHH
Q 030794           75 TSE-MWHPNVYPDGKVCISILHPPGDDPNGYELATE---RWTPVHTAASVWR  122 (171)
Q Consensus        75 ~t~-i~HpnV~~~G~iCl~~l~~~~~~~~~~~~~~~---~W~p~~~l~~il~  122 (171)
                      .+. +||||||.+|+|||++|.            ..   .|+|+++|.++|.
T Consensus       105 ~~~~~~hpnmY~~G~ICLdIL~------------kp~Ws~~~P~~~IahiL~  144 (172)
T 2z6o_A          105 PELDGKTAKMYRGGKICLTDHF------------KPLWARNVPKFGLAHLMA  144 (172)
T ss_dssp             GGGTTTCSSBCTTSBBCCCTTH------------HHHHHHHTTSCCHHHHHH
T ss_pred             CCCCCCCCCCCCCCcEechhhc------------cccccccCCccCHHHHHh
Confidence            998 999999999999999994            13   4559999999994

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.74  E-value=5.2e-18  Score=127.82  Aligned_cols=110  Identities=21%  Similarity=0.231  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHhhCCCCCeEE----EecCCCCceEEEEEEECCCCCCCCCcE---EEEEEEcCCCCCCCCCeeEEecC---
Q 030794            8 LLLQKQLKDLCKNPVDGFSA----GLVDESNVFEWSVSIIGPPDTLYEGGF---FNAIMTFPDNYPVSPPTVRFTSE---   77 (171)
Q Consensus         8 ~Rl~~El~~l~~~~~~~i~~----~~~~~~n~~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t~---   77 (171)
                      +|..+|+.++.+.-+ .+..    ... +|...++-+.+.|.-..+|+|+.   |.+.|.||.+||++||.|.|.++   
T Consensus        31 ~~~~~dv~~~l~~yp-~L~p~t~~yt~-~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~  108 (162)
T 3r3q_A           31 RTTFHDSLALLDNFH-SLRPRTRVFTH-SDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFD  108 (162)
T ss_dssp             HHHHHHHHHHHHHCT-TEEEEEEEEEC-TTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCC
T ss_pred             hHHHHHHHHHHHhCC-CCceeeeeEEc-CCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcc
Confidence            567788887755432 3332    223 56666777777777779999998   88999999999999999977541   


Q ss_pred             -------Cc-cCccCCCCceeeccCCCCCCCCCCCCCCCCCCCc-cCcHHHHHHHHHHhhcCcHH
Q 030794           78 -------MW-HPNVYPDGKVCISILHPPGDDPNGYELATERWTP-VHTAASVWRSLSPGVLNYAW  133 (171)
Q Consensus        78 -------i~-HpnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p-~~~l~~il~~i~~ll~~~~~  133 (171)
                             ++ ||||+.+|+||++.|              ++|+| +.+|.++|.+|+++|.++.+
T Consensus       109 m~~~~~~I~~hpnVD~~G~I~lpyL--------------~~W~p~~s~L~~ll~~l~~lf~ep~~  159 (162)
T 3r3q_A          109 MNTISSSLPIQEYIDSNGWIALPIL--------------HAWDPAAMNLIMVVQELMSLLHEPPQ  159 (162)
T ss_dssp             TTTSCTTSTHHHHBCTTSBBCCGGG--------------GSCCGGGCCHHHHHHHHHHTTSCCCC
T ss_pred             ccccccccCCCCCCCCCCcEeCccc--------------ccCCCCcCcHHHHHHHHHHHhcCCCC
Confidence                   77 999999999999999              46999 67999999999999876543

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.72  E-value=2.1e-19  Score=132.13  Aligned_cols=83  Identities=19%  Similarity=0.353  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCc----------EEEEEEEcCCCCCCCCCeeEE
Q 030794            5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGG----------FFNAIMTFPDNYPVSPPTVRF   74 (171)
Q Consensus         5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~f   74 (171)
                      .-.+||++||+.|-+      +++. +.++-..|...+.||++|+|+|+          .|.+++.||.+||.+||+|+|
T Consensus        34 ~w~~RlkeEy~alI~------yv~~-nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~F  106 (168)
T 3kpa_A           34 KWTARLKEEYASLIT------YVEH-NKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIAL  106 (168)
T ss_dssp             HHHHHHHHHHHHHHH------HHHH-HHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBC
T ss_pred             HHHHHHHHHHHHHHH------HHHh-cccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeec
Confidence            467899999999843      1222 23344578899999999999999          999999999999999999999


Q ss_pred             ecC-CccCccCCCCceeeccC
Q 030794           75 TSE-MWHPNVYPDGKVCISIL   94 (171)
Q Consensus        75 ~t~-i~HpnV~~~G~iCl~~l   94 (171)
                      .+. .+|||+|.+|+|||+++
T Consensus       107 p~ldgkt~kmYr~GkICLdIh  127 (168)
T 3kpa_A          107 PELEGKTVKMYRGGKICMTTH  127 (168)
T ss_dssp             GGGTTTCSSEETTTEECCCTT
T ss_pred             ccccCcCccccCCCcEEeccc
Confidence            995 89999999999999865

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.56  E-value=3.2e-15  Score=110.77  Aligned_cols=86  Identities=19%  Similarity=0.326  Sum_probs=75.6

Q ss_pred             CCCceEEEEEEECCCCCCCCCcEEEE--EEEcCCCCCCCCCeeEEecC------CccCccCCCCceeeccCCCCCCCCCC
Q 030794           32 ESNVFEWSVSIIGPPDTLYEGGFFNA--IMTFPDNYPVSPPTVRFTSE------MWHPNVYPDGKVCISILHPPGDDPNG  103 (171)
Q Consensus        32 ~~n~~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~------i~HpnV~~~G~iCl~~l~~~~~~~~~  103 (171)
                      ..+++.|.++|.    .+|+|+.|.+  .|-||.+||++||.| |.++      .+||||+.+|+||++.|.        
T Consensus        50 ~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~--------  116 (146)
T 3obq_A           50 SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLH--------  116 (146)
T ss_dssp             TCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHH--------
T ss_pred             hheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEeccccc--------
Confidence            358999999996    6899999995  888999999999999 7776      589999999999999994        


Q ss_pred             CCCCCCCCCc-cCcHHHHHHHHHHhhcCcHHHhh
Q 030794          104 YELATERWTP-VHTAASVWRSLSPGVLNYAWFLM  136 (171)
Q Consensus       104 ~~~~~~~W~p-~~~l~~il~~i~~ll~~~~~~~~  136 (171)
                            .|++ ..+|.+++..+++.|...++++.
T Consensus       117 ------~W~~~~snL~~ll~~l~~~F~~epPv~s  144 (146)
T 3obq_A          117 ------EWKHPQSDLLGLIQVMIVVFGDEPPVFS  144 (146)
T ss_dssp             ------TCCTTTCCHHHHHHHHHHHHHHSCSEEE
T ss_pred             ------ccCCCCCCHHHHHHHHHHHHhhCCCCcc
Confidence                  5998 78999999999999987777543

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.58  E-value=0.01  Score=41.85  Aligned_cols=68  Identities=16%  Similarity=0.160  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEec
Q 030794            6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTS   76 (171)
Q Consensus         6 a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   76 (171)
                      ...+...|+..|..--+..+.+.   .+....+.+.|..-.+..-+.-.+.+.|.||++||..||.|.+.+
T Consensus        11 ~~e~q~~EleaL~sIy~d~~~~~---~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           11 YGEEQRNELEALESIYPDSFTVL---SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEEC---CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             hHHHHHHHHHHHHHHccCceEEc---cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            35567889999987766656542   223456666665222222234478899999999999999997654

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=95.89  E-value=0.088  Score=37.42  Aligned_cols=68  Identities=10%  Similarity=0.191  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEecCC-------CCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecC
Q 030794            7 SLLLQKQLKDLCKNPVDGFSAGLVDE-------SNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE   77 (171)
Q Consensus         7 ~~Rl~~El~~l~~~~~~~i~~~~~~~-------~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   77 (171)
                      ..+-..|+..|..--+..+..  .+.       +....+.+.|....+ .-..-.+.+.|.+|++||..||.|.+.+.
T Consensus        12 ~e~q~~EleaL~SIY~d~~~~--~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~   86 (138)
T 2yz0_A           12 YEIQCNELEAIRSIYMDDFTD--LTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV   86 (138)
T ss_dssp             HHHHHHHHHHHHTTSSSSEEC--CSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHChhhhee--cccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence            455678888888766555433  212       124567777763222 21234788999999999999999987653

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=95.85  E-value=0.077  Score=37.18  Aligned_cols=68  Identities=13%  Similarity=0.203  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhhCCCCCeEEEecCC--CCceEEEEEEECCCCCCC--CCcEEEEEEEcCCCCCCCCCeeEEec
Q 030794            8 LLLQKQLKDLCKNPVDGFSAGLVDE--SNVFEWSVSIIGPPDTLY--EGGFFNAIMTFPDNYPVSPPTVRFTS   76 (171)
Q Consensus         8 ~Rl~~El~~l~~~~~~~i~~~~~~~--~n~~~w~~~i~Gp~~tpy--~gg~f~~~i~fp~~YP~~pP~v~f~t   76 (171)
                      .+...|+..|+.--+..+...-. .  .+...+.+.+..+.+..-  ..-.+.+.|.+|++||..+|.|.+.+
T Consensus        11 e~~~~EleaL~SIY~de~~~~~~-~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~   82 (128)
T 2day_A           11 WVLPSEVEVLESIYLDELQVIKG-NGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN   82 (128)
T ss_dssp             CHHHHHHHHHHHHSTTTEEEECC-TTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCceEEecC-CCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence            45788999888777666655321 1  234556666652222111  12478899999999999999998775

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=95.47  E-value=0.11  Score=39.42  Aligned_cols=88  Identities=13%  Similarity=0.203  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCCCC
Q 030794            8 LLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDG   87 (171)
Q Consensus         8 ~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G   87 (171)
                      .+|.+|+.+|-=+.     +... .+++....+++...     .|....++|.++.+||.+||.+...-|.  |      
T Consensus         4 ~~li~Ei~~iGW~~-----l~~i-d~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~------   64 (186)
T 3zqs_A            4 SSLIEEIGTLGWDK-----LVYA-DTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPV--P------   64 (186)
T ss_dssp             CSHHHHHHHHCGGG-----EEEE-CTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSS--C------
T ss_pred             HHHHHHHHHhCCce-----eeee-cCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCC--C------
Confidence            36788888882211     2223 35677888888733     3788899999999999999988655443  1      


Q ss_pred             ceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH
Q 030794           88 KVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW  133 (171)
Q Consensus        88 ~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~  133 (171)
                            +             .-.|+|..+|.+++...+..+..-..
T Consensus        65 ------~-------------~~~w~~~ssL~~v~~qF~~~Le~lq~   91 (186)
T 3zqs_A           65 ------F-------------CASWTPQSSLISIYSQFLAAIESLKA   91 (186)
T ss_dssp             ------C-------------CCCCCTTCCHHHHHHHHHHHHHHTHH
T ss_pred             ------c-------------ccccCCCccHHHHHHHHHHHHHHHHH
Confidence                  0             14699999999999999988765444

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.17  E-value=0.045  Score=38.49  Aligned_cols=66  Identities=14%  Similarity=0.161  Sum_probs=40.5

Q ss_pred             HHHHHHHHHhhCCCC--CeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEe
Q 030794            9 LLQKQLKDLCKNPVD--GFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFT   75 (171)
Q Consensus         9 Rl~~El~~l~~~~~~--~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~   75 (171)
                      +...|+..|+.--+.  .+...-....+...+.+.|.. .+..-..-.+.+.|.+|++||..||.|.+.
T Consensus        11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~   78 (128)
T 2ebk_A           11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISIN   78 (128)
T ss_dssp             HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred             HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence            456788877765443  343321112234577777763 221111247899999999999999998543

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=93.69  E-value=0.32  Score=34.26  Aligned_cols=66  Identities=15%  Similarity=0.098  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEecCCC------CceEEEEEEECCCC-C-CCCCcEEEEEEEcCCCCCCCCCeeEEe
Q 030794            7 SLLLQKQLKDLCKNPVDGFSAGLVDES------NVFEWSVSIIGPPD-T-LYEGGFFNAIMTFPDNYPVSPPTVRFT   75 (171)
Q Consensus         7 ~~Rl~~El~~l~~~~~~~i~~~~~~~~------n~~~w~~~i~Gp~~-t-py~gg~f~~~i~fp~~YP~~pP~v~f~   75 (171)
                      ..+...|+..|+.--+..+...  +.+      ....+.+.|. +.+ + .-..-.+.+.|.||++||..||.|.+.
T Consensus        12 ~e~q~~EleaL~SIY~d~~~~~--~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~   85 (137)
T 1ukx_A           12 SQRQDHELQALEAIYGSDFQDL--RPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK   85 (137)
T ss_dssp             HHHHHHHHHHHHHHTSSSEEEC--CCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred             HHHHHHHHHHHHHHCcccceec--cCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEe
Confidence            4566788888887665555442  121      1345666665 222 1 001246889999999999999999774

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=93.64  E-value=0.36  Score=35.08  Aligned_cols=69  Identities=14%  Similarity=0.080  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHhhCCC--CCeEEEec-----------C--CC--CceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCC
Q 030794            5 QASLLLQKQLKDLCKNPV--DGFSAGLV-----------D--ES--NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPV   67 (171)
Q Consensus         5 ~a~~Rl~~El~~l~~~~~--~~i~~~~~-----------~--~~--n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~   67 (171)
                      -...+-..|+..|..--+  .-+.+.-.           +  .+  ..+.+.+.|.- .+ +  ...+.+.|.+|.+||.
T Consensus        14 ~~~e~Q~eElEaL~SIY~~~de~~v~d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~-~~-~--~~~i~L~v~lP~~YP~   89 (154)
T 2daw_A           14 ESLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQI-EE-P--KVKIDLQVTMPHSYPY   89 (154)
T ss_dssp             HHHHHHHHHHHHHHHHCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEE-TT-T--TEEEEEEEEECSSTTS
T ss_pred             hhHHHHHHHHHHHHHhCCCCCeEEEeccchHHHHHHhhcccccCCCCceEEEEEEec-CC-C--CceEEEEEEcCCCCCC
Confidence            344566778888877655  44544200           0  01  11345544432 11 1  2378999999999999


Q ss_pred             CCCeeEEecC
Q 030794           68 SPPTVRFTSE   77 (171)
Q Consensus        68 ~pP~v~f~t~   77 (171)
                      .+|.|...+.
T Consensus        90 ~~P~i~l~~~   99 (154)
T 2daw_A           90 LALQLFGRSS   99 (154)
T ss_dssp             SCCEEEEECS
T ss_pred             CCCcEEEEeC
Confidence            9999976643

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=90.55  E-value=0.19  Score=36.32  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=21.3

Q ss_pred             cEEEEEEEcCCCCCCCCCeeEEecC
Q 030794           53 GFFNAIMTFPDNYPVSPPTVRFTSE   77 (171)
Q Consensus        53 g~f~~~i~fp~~YP~~pP~v~f~t~   77 (171)
                      -.+.+.|.+|.+||..||.|.+...
T Consensus        73 ~~l~L~v~lP~~YP~~~P~i~l~~~   97 (152)
T 2dax_A           73 AMFSLACILPFKYPAVLPEITVRSV   97 (152)
T ss_dssp             EEEEEEEEECSSTTSSCCCCEEECT
T ss_pred             ceEEEEEECCCCCCCCCCeEEEEcc
Confidence            3688999999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	171
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	9e-42
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	2e-40
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-33
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	2e-25
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-24
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	7e-24
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	9e-24
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	9e-24
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	9e-24
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	1e-22
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	1e-22
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	2e-22
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-22
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	5e-22
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	8e-22
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	1e-21
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	4e-21
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	8e-21
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	2e-20
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	3e-20
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	9e-20
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-19
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	5e-19
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	7e-19
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-18
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	1e-17
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	7e-17
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	9e-17
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	1e-16
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	3e-12
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	8e-11

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score =  134 bits (337), Expect = 9e-42
 Identities = 69/118 (58%), Positives = 92/118 (77%)

Query: 7   SLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYP 66
           SLLL++QL +L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +TFP +YP
Sbjct: 1   SLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYP 60

Query: 67  VSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           + PP ++F +E+WHPNV  +G VCISILH PG+D  GYE   ERW P+HT  ++  S+
Sbjct: 61  LRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISV 118

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score =  132 bits (332), Expect = 2e-40
 Identities = 72/119 (60%), Positives = 93/119 (78%)

Query: 6   ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNY 65
           +SLLL+KQL D+ + PVDGFSAGLVD++++++W V +IGPPDTLYEGGFF AI+ FP +Y
Sbjct: 1   SSLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDY 60

Query: 66  PVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           P  PP ++F SE+WHPN+  +G VCISILH PGDD  GYE   ERW PVHT  ++  S+
Sbjct: 61  PQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSV 119

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score =  114 bits (286), Expect = 1e-33
 Identities = 62/121 (51%), Positives = 79/121 (65%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
             A   L K+L+ L K+   G  AG   E+N+F W   I GPPDT Y  G FNA + FP 
Sbjct: 2   KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPK 61

Query: 64  NYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRS 123
           +YP+SPP + FT  + HPN+YP+G+VCISILH PGDDPN YELA ERW+PV +   +  S
Sbjct: 62  DYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLS 121

Query: 124 L 124
           +
Sbjct: 122 V 122

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.4 bits (229), Expect = 2e-25
 Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 16/118 (13%)

Query: 10  LQKQLKDLCKNPVDGFSAGLV-DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVS 68
           LQK+L  L  +P  G +      ++++ +W V + G P TLYEG  F  +  F   YP  
Sbjct: 8   LQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFD 67

Query: 69  PPTVRFTSEMW--HPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
            P V FT E    HP+VY +G +C+SIL             TE W+P  +  SV  S+
Sbjct: 68  SPQVMFTGENIPVHPHVYSNGHICLSIL-------------TEDWSPALSVQSVCLSI 112

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 91.0 bits (225), Expect = 2e-24
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 12/116 (10%)

Query: 10  LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
           + K+++ +  +P    +   V ES++     + +GPP T YEGG F   +  P  YP  P
Sbjct: 6   IMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKP 65

Query: 70  PTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           P ++F ++++HPN+          +                W+PV T  S   SL 
Sbjct: 66  PKMQFDTKVYHPNISSVTGAICLDILKN------------AWSPVITLKSALISLQ 109

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 89.5 bits (221), Expect = 7e-24
 Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 10/122 (8%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
           S ++  +QK+L ++  +P    SAG     N++EW  +I+GPP ++YEGG F   +TF  
Sbjct: 1   STSAKRIQKELAEITLDPPPNCSAG-PKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSP 59

Query: 64  NYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRS 123
           +YP  PP V F + ++H N+   G +C+ IL          +  +   T      S+   
Sbjct: 60  DYPFKPPKVTFRTRIYHCNINSQGVICLDILK---------DNWSPALTISKVLLSICSL 110

Query: 124 LS 125
           L+
Sbjct: 111 LT 112

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 88.7 bits (219), Expect = 9e-24
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 10  LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
           L K+L+++ K  +  F    VDE+N+  W   +I P +  Y+ G F   + FP  YP  P
Sbjct: 4   LMKELEEIRKCGMKNFRNIQVDEANLLTWQG-LIVPDNPPYDKGAFRIEINFPAEYPFKP 62

Query: 70  PTVRFTSEMWHPNVYPDGKVCISILHPPGDDPN 102
           P + F ++++HPN+   G+VC+ ++      P 
Sbjct: 63  PKITFKTKIYHPNIDEKGQVCLPVISAENWKPA 95

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 89.1 bits (220), Expect = 9e-24
 Identities = 36/87 (41%), Positives = 58/87 (66%), Gaps = 1/87 (1%)

Query: 10 LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
          +QK+L+DL ++P    SAG V + ++F W  +I+GPP++ Y+GG F   + FP +YP  P
Sbjct: 6  IQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKP 64

Query: 70 PTVRFTSEMWHPNVYPDGKVCISILHP 96
          P V FT+ ++HPN+  +G +C+ IL  
Sbjct: 65 PKVAFTTRIYHPNINSNGSICLDILRS 91

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 89.0 bits (220), Expect = 9e-24
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 6   ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNY 65
           AS+ + K+L+DL K P         D++NV  W   ++ P    Y    FN  ++FP  Y
Sbjct: 1   ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHA-LLLPDQPPYHLKAFNLRISFPPEY 59

Query: 66  PVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDP 101
           P  PP ++FT++++HPNV  +G++C+ I+      P
Sbjct: 60  PFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKP 95

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 85.9 bits (212), Expect = 1e-22
 Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 13/122 (10%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
            +A LLL +   DL +N   G +A  V E ++ EW V I G  +++++G  F   + F  
Sbjct: 3   GRAYLLLHRDFCDLKENNYKGITAKPVSE-DMMEWEVEIEGLQNSVWQGLVFQLTIHFTS 61

Query: 64  NYPVSPPTVRFTSEMWHPNVYPDG-KVCISILHPPGDDPNGYELATERWTPVHTAASVWR 122
            Y  +PP V+F +  +HPNV P   + CI  L  P           E+W   +T +S+  
Sbjct: 62  EYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNP-----------EKWNTNYTLSSILL 110

Query: 123 SL 124
           +L
Sbjct: 111 AL 112

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 86.0 bits (212), Expect = 1e-22
 Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 15/119 (12%)

Query: 10  LQKQLKDLCKNPVDGFSAGLVDE----SNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNY 65
           L ++ K   K+   GF A          N+  W  +I G   T +EGG F   M F D+Y
Sbjct: 7   LAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDY 66

Query: 66  PVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           P SPP  +F   ++HPNVYP G V +SIL    D           W P  T   +   +
Sbjct: 67  PSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKD-----------WRPAITIKQILLGI 114

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 84.4 bits (208), Expect = 2e-22
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)

Query: 10  LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
           +QK+L +   NP    +   V  +N+  W V  +G  +T+Y    +   + FPD+YP+ P
Sbjct: 3   IQKELHNFLNNPPINCTLD-VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 61

Query: 70  PTVRF-TSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           P V F      H +VY +G +C+S+L              + + P  + + +  S+
Sbjct: 62  PIVYFLQKPPKHTHVYSNGDICLSLLG-------------DDYNPSLSISGLVLSI 104

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 85.2 bits (210), Expect = 3e-22
 Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 14/121 (11%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
           + A   L +  K + ++   G SA  + + NV  W+  IIGP DT YE G F  ++ F +
Sbjct: 2   TPARRRLMRDFKRMKEDAPPGVSASPLPD-NVMVWNAMIIGPADTPYEDGTFRLLLEFDE 60

Query: 64  NYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRS 123
            YP  PP V+F SEM+HPNVY +G++C+ IL               RWTP +  AS+  S
Sbjct: 61  EYPNKPPHVKFLSEMFHPNVYANGEICLDILQ-------------NRWTPTYDVASILTS 107

Query: 124 L 124
           +
Sbjct: 108 I 108

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 84.4 bits (208), Expect = 5e-22
 Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 14/123 (11%)

Query: 2   AKSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTF 61
            +   S  LQ++L+ L  +   G +A   D  N+F+W  ++ GP DT+YE   +   + F
Sbjct: 6   ERHSVSKRLQQELRTLLMSGDPGITAF-PDGDNLFKWVATLDGPKDTVYESLKYKLTLEF 64

Query: 62  PDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVW 121
           P +YP  PP V+FT+  WHPNV   G +C+ IL              E WT  +   ++ 
Sbjct: 65  PSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILK-------------ENWTASYDVRTIL 111

Query: 122 RSL 124
            SL
Sbjct: 112 LSL 114

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 83.5 bits (206), Expect = 8e-22
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 15/119 (12%)

Query: 10  LQKQLKDLCKNPVDGFSAGLV---DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYP 66
           L ++L++  K   DG  +  +   ++  +  W+  IIGPP T+YE   ++  +     YP
Sbjct: 10  LLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYP 69

Query: 67  VSPPTVRFTSEMWHPNV-YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
            +PP VRF +++    V   +G V    +               +W   ++   V + L
Sbjct: 70  EAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-----------KWQNSYSIKVVLQEL 117

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 84.0 bits (207), Expect = 1e-21
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 4  SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
          S A L +QK + +L             D  ++  + + +I P +  Y+ G F        
Sbjct: 2  SAAQLRIQKDINELNLPK--TCDISFSDPDDLLNFKL-VICPDEGFYKSGKFVFSFKVGQ 58

Query: 64 NYPVSPPTVRFTSEMWHPNVYPDGKVCISILHP 96
           YP  PP V+  + ++HPN+  +G VC++IL  
Sbjct: 59 GYPHDPPKVKCETMVYHPNIDLEGNVCLNILRE 91

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 82.1 bits (202), Expect = 4e-21
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 10 LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
          + K+ + L   PV G  A   DESN   + V I GP D+ +EGG F   +  P+ YP++ 
Sbjct: 7  IIKETQRLLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 65

Query: 70 PTVRFTSEMWHPNVYPDGKVCISILHPP 97
          P VRF ++++HPNV   G++C+ IL   
Sbjct: 66 PKVRFMTKIYHPNVDKLGRICLDILKDK 93

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 81.7 bits (201), Expect = 8e-21
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 13/119 (10%)

Query: 6   ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNY 65
           A+  L++    + K+PV    A     SN+ EW   + GP  T YEGG+++  + FP  +
Sbjct: 2   ATQRLKQDYLRIKKDPVPYICAEP-LPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREF 60

Query: 66  PVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSL 124
           P  PP++   +         + ++C+SI               + W P  + +++   L
Sbjct: 61  PFKPPSIYMITPNGRFKC--NTRLCLSITD----------FHPDTWNPAWSVSTILTGL 107

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 2e-20
 Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 13/141 (9%)

Query: 5   QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDN 64
           Q +  L+++L  L   P  G +    D+  + +    I+G  +T YE G F   +  P+ 
Sbjct: 2   QRASRLKRELHMLATEPPPGITCW-QDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER 60

Query: 65  YPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVW--- 121
           YP  PP +RF + ++HPN+   G++C+ +L  P             W P    A+V    
Sbjct: 61  YPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGA---------WRPSLNIATVLTSI 111

Query: 122 RSLSPGVLNYAWFLMNAGYEY 142
           + L          + +   E+
Sbjct: 112 QLLMSEPNPDDPLMADISSEF 132

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 79.3 bits (195), Expect = 3e-20
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 14/126 (11%)

Query: 2   AKSQASLLLQKQLKDLCKNPVDGF-SAGLVDESNVF--EWSVSIIGPPDTLYEGGFFNAI 58
           +K   +  L ++L+   K       S GL D  ++   +W+ +I+GPP + +E   ++  
Sbjct: 1   SKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLS 60

Query: 59  MTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAA 118
           +    NYP SPP V F S++  P V P      +  H               W   +T  
Sbjct: 61  IDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTL-----------RDWKRAYTME 109

Query: 119 SVWRSL 124
           ++   L
Sbjct: 110 TLLLDL 115

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 78.6 bits (193), Expect = 9e-20
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 14/121 (11%)

Query: 4   SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
           + +   L +  K L ++P  G S     E N+  W   I GP +T +E G F   + F +
Sbjct: 2   TPSRRRLMRDFKKLQEDPPAGVSGAP-TEDNILTWEAIIFGPQETPFEDGTFKLSLEFTE 60

Query: 64  NYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRS 123
            YP  PPTV+F S+M+HPNVY DG +C+ IL                W+P +  A++  S
Sbjct: 61  EYPNKPPTVKFISKMFHPNVYADGSICLDILQNR-------------WSPTYDVAAILTS 107

Query: 124 L 124
           +
Sbjct: 108 I 108

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 77.5 bits (190), Expect = 2e-19
 Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 3/90 (3%)

Query: 6  ASLL--LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPD 63
          ASL   + K+ + L  +PV G +A    + N+  + V+I GP  + YE G F   +  PD
Sbjct: 2  ASLPKRIIKETEKLVSDPVPGITAEP-HDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60

Query: 64 NYPVSPPTVRFTSEMWHPNVYPDGKVCISI 93
          +YP+  P VRF ++++HPN+   G++C+ +
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRLGRICLDV 90

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 77.2 bits (189), Expect = 5e-19
 Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 28/129 (21%)

Query: 10  LQKQLKDLCK-------------NPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFN 56
           L K+L D+ +             +   G SA +V   ++  W   I GP  T YEGG F 
Sbjct: 6   LLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGG-DIHRWRGFIAGPLGTPYEGGHFT 64

Query: 57  AIMTFPDNYPVSPPTVRF-TSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVH 115
             +  P +YP +PP ++F T           G +C+ IL                W+P  
Sbjct: 65  LDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILK-------------HEWSPAL 111

Query: 116 TAASVWRSL 124
           T  +   S+
Sbjct: 112 TIRTALLSI 120

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 74.8 bits (183), Expect = 2e-18
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 10 LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
          LQ++L  L  +   G SA   +  N+F+W  +I G   T+YE   +   + FP  YP + 
Sbjct: 6  LQQELMTLMMSGDKGISAF-PESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNA 64

Query: 70 PTVRFTSEMWHPNVYPDGKVCISILH 95
          PTV+F +  +HPNV   G + + IL 
Sbjct: 65 PTVKFLTPCYHPNVDTQGNISLDILK 90

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 72.9 bits (178), Expect = 1e-17
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 1/98 (1%)

Query: 3   KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFP 62
                 L+ K++  L  +P DG      +E ++ +  V+I GP  T Y GG F   +   
Sbjct: 4   PPHIIRLVYKEVTTLTADPPDGIKV-FPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLG 62

Query: 63  DNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDD 100
            ++P SPP   F ++++HPNV  +G++C+++L      
Sbjct: 63  KDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTA 100

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (173), Expect = 7e-17
 Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 20/103 (19%)

Query: 30  VDESNVFEWSVSIIGPPDTLYEGGFFNAIMT--FPDNYPVSPPTVRFTSEM-----WHPN 82
           V         +++ G     Y G  +N  +     D YP +PP                +
Sbjct: 41  VFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKH 100

Query: 83  VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           V  +GK+ +  LH             E   P      + + + 
Sbjct: 101 VDANGKIYLPYLH-------------EWKHPQSDLLGLIQVMI 130

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.0 bits (173), Expect = 9e-17
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 3/104 (2%)

Query: 1   MAKSQASLLLQKQLKDLCKNPVDGFSAGLVD--ESNVFEWSVSIIGPPDTLYEGGFFNAI 58
           MA + A   ++++ K++ K+     +   VD  + N  E    I GPPDT YEGG +   
Sbjct: 1   MA-NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLE 59

Query: 59  MTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPN 102
           +  P+ YP +PP VRF +++WHPN+          +        
Sbjct: 60  IKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAA 103

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 70.5 bits (172), Expect = 1e-16
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 10  LQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSP 69
            +     LC +    +         V E+ V   GP  T YE G +   +  P +YP   
Sbjct: 5   REMDYMRLCNSTRKVY-----PSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKS 59

Query: 70  PTVRFTSEMWHPNVYPDGKVCISILHPPGDDP 101
           P++ F + + HPNV          +      P
Sbjct: 60  PSIGFCNRILHPNVDERSGSVCLDVINQTWTP 91

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (142), Expect = 3e-12
 Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 29/138 (21%)

Query: 4   SQASLLLQKQLKDLCKNPVDG---FSAGLVDESNVFEWSVSIIG-PPDTLYEGG------ 53
            QAS  L K+L+D+ ++       +S  L+++ ++++W V +    PD+           
Sbjct: 3   VQASDRLMKELRDIYRSQSYKTGIYSVELIND-SLYDWHVKLQKVDPDSPLHSDLQILKE 61

Query: 54  -----FFNAIMTFPDNYPVSPPTVRFTSE-MWHPNVYPDGKVCISILHPPGDDPNGYELA 107
                +     +F DN+P  PP VR     +    V   G +C+ +L             
Sbjct: 62  KEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTK----------- 110

Query: 108 TERWTPVHTAASVWRSLS 125
            + W+  ++  SV   ++
Sbjct: 111 -QGWSSAYSIESVIMQIN 127

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.0 bits (132), Expect = 8e-11
 Identities = 20/100 (20%), Positives = 29/100 (29%), Gaps = 27/100 (27%)

Query: 40  VSIIGPPDTLYEGG---FFNAIMTFPDNYPVSPPTVRFTSEMW-----------HPNVYP 85
           +SI G   T  +G        IM  P  YPV PP +    E +              +  
Sbjct: 56  LSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDS 115

Query: 86  DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLS 125
           +G + + ILH                        V + L 
Sbjct: 116 NGWIALPILH-------------CWDPAAMNLIMVVQELM 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	100.0
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	100.0
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	100.0
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.83
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.7
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	97.65
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	96.39
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	92.43
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	90.36
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	89.41

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=7.8e-43  Score=263.28  Aligned_cols=153  Identities=42%  Similarity=0.774  Sum_probs=142.2

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCc
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN   82 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   82 (171)
                      |..|.|||++|+++|++++++|+++.+.+++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++||||
T Consensus         1 s~~a~kRL~~E~~~l~~~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   80 (164)
T d2ucza_           1 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPN   80 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTT
T ss_pred             CHHHHHHHHHHHHHHhhCCCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCceece
Confidence            46899999999999999999999999977889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHh
Q 030794           83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      |+.+|+||+++|+..+....+.+.+.+.|+|+++|.+||.+|+++|.+          ++.++.++..+|.+++++++.+
T Consensus        81 v~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~~r~~~~k  160 (164)
T d2ucza_          81 IYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILK  160 (164)
T ss_dssp             BCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             EcCCCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            999999999999988777888888889999999999999999999966          3457888899999999999988


Q ss_pred             hhh
Q 030794          153 VHS  155 (171)
Q Consensus       153 ~~~  155 (171)
                      +..
T Consensus       161 ~~~  163 (164)
T d2ucza_         161 SLG  163 (164)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            653

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=2.9e-42  Score=256.42  Aligned_cols=137  Identities=32%  Similarity=0.652  Sum_probs=129.2

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCc
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN   82 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   82 (171)
                      |++|.|||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         1 ~~pa~rRl~~E~~~l~~~~~~gi~~~p~-~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPn   79 (149)
T d1z3da1           1 TTPSRRRLMRDFKKLQEDPPAGVSGAPT-EDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPN   79 (149)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             CCHHHHHHHHHHHHHhhCCCCCEEEEEC-CCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCccccee
Confidence            4789999999999999999999999996 889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHh
Q 030794           83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      |+.+|.||+++|.             +.|+|+++|.+||.+|+++|.+          ++.++.++..+|.+++++++++
T Consensus        80 I~~~G~iCl~~l~-------------~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~k  146 (149)
T d1z3da1          80 VYADGSICLDILQ-------------NRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ  146 (149)
T ss_dssp             BCTTCBBCCGGGT-------------TSCCTTCCHHHHHHHHHHTTSSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             EcCCCCEEecccc-------------ccCCCCCCHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997             7899999999999999999965          4447888999999999999987


Q ss_pred             h
Q 030794          153 V  153 (171)
Q Consensus       153 ~  153 (171)
                      +
T Consensus       147 s  147 (149)
T d1z3da1         147 S  147 (149)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=6.1e-42  Score=255.46  Aligned_cols=140  Identities=34%  Similarity=0.626  Sum_probs=131.4

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCc
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN   82 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   82 (171)
                      |++|.|||++|+++|+++++.|+++.+. ++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         1 st~A~kRl~~El~~l~~~~~~gi~~~p~-~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPn   79 (153)
T d1ayza_           1 STPARRRLMRDFKRMKEDAPPGVSASPL-PDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN   79 (153)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             CCHHHHHHHHHHHHHhHCCCCCEEEEEC-CCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCccC
Confidence            4789999999999999999999999997 889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHh
Q 030794           83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      |+.+|.||+++|.             +.|+|+++|.+||.+|+++|.+          ++.++.++..+|.+++++++++
T Consensus        80 I~~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~eaa~l~~~~~~~f~~~~~~~~~k  146 (153)
T d1ayza_          80 VYANGEICLDILQ-------------NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEK  146 (153)
T ss_dssp             BCTTSBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCCCcccccccc-------------ccCCCcCcHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997             8999999999999999999966          3457888889999999999998


Q ss_pred             hhhh
Q 030794          153 VHSV  156 (171)
Q Consensus       153 ~~~~  156 (171)
                      +...
T Consensus       147 s~~~  150 (153)
T d1ayza_         147 SWED  150 (153)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            7643

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=5.7e-42  Score=254.54  Aligned_cols=138  Identities=30%  Similarity=0.591  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCcc
Q 030794            4 SQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV   83 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV   83 (171)
                      +.|.|||++|+++|+++++.|+++.+. ++|++.|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||
T Consensus         1 s~~~kRi~~E~~~l~~~~~~gi~~~~~-~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv   79 (148)
T d1y6la_           1 STSAKRIQKELAEITLDPPPNCSAGPK-GDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNI   79 (148)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             ChHHHHHHHHHHHHhhCCCCCEEEEEC-CcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCceE
Confidence            478999999999999999999999996 8899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhh
Q 030794           84 YPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSV  153 (171)
Q Consensus        84 ~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~  153 (171)
                      +.+|.||+++|.             +.|+|+++|.+||.+|+++|.+          ++.++.++..+|.++++++++++
T Consensus        80 ~~~G~iCl~~l~-------------~~W~p~~~l~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~k~  146 (148)
T d1y6la_          80 NSQGVICLDILK-------------DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY  146 (148)
T ss_dssp             CTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecC-------------CcCCCcEeHHHHHHHHHHHHhCCCCcccccHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence            999999999996             8899999999999999999966          34478888899999999999998


Q ss_pred             hh
Q 030794          154 HS  155 (171)
Q Consensus       154 ~~  155 (171)
                      |+
T Consensus       147 A~  148 (148)
T d1y6la_         147 AT  148 (148)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=1.3e-41  Score=252.09  Aligned_cols=135  Identities=33%  Similarity=0.678  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCC
Q 030794            6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP   85 (171)
Q Consensus         6 a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~   85 (171)
                      |.|||++|+++|+++++.||++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus         2 a~kRL~~E~~~l~~~~~~~i~~~~~-~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~   80 (147)
T d1z2ua1           2 ALKRIQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS   80 (147)
T ss_dssp             HHHHHHHHHHHHHHSCCSSEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEC-CCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceeeECC
Confidence            6899999999999999999999997 889999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhhh
Q 030794           86 DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSVH  154 (171)
Q Consensus        86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~~  154 (171)
                      +|+||+++|.             +.|+|++++.+||.+|+++|.+          ++.++.++...|.++++++++++|
T Consensus        81 ~G~iCl~~l~-------------~~w~p~~~i~~Il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~k~A  146 (147)
T d1z2ua1          81 NGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA  146 (147)
T ss_dssp             TCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCEeeehhc-------------ccCCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            9999999997             7899999999999999999966          334788888999999999999876

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=1.6e-41  Score=255.43  Aligned_cols=149  Identities=50%  Similarity=0.968  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCC
Q 030794            6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP   85 (171)
Q Consensus         6 a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~   85 (171)
                      +..||+||+++|++++++|+++.+.+++|++.|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.
T Consensus         1 ~~~~L~kE~~~l~~~~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~   80 (161)
T d1pzva_           1 SSLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDK   80 (161)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTBCT
T ss_pred             CChHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCcccCC
Confidence            35799999999999999999999986788999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhhh
Q 030794           86 DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSVH  154 (171)
Q Consensus        86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~~  154 (171)
                      +|.||+++|...+...++++...+.|+|+++|.+||.+|+++|.+          ++.++.++..+|.++|+++++++.
T Consensus        81 ~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~v~k~~  159 (161)
T d1pzva_          81 EGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQ  159 (161)
T ss_dssp             TSBBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             CCccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence            999999999877777777777778899999999999999999966          444788899999999999998753

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=3.2e-41  Score=251.85  Aligned_cols=141  Identities=23%  Similarity=0.434  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccC
Q 030794            5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVY   84 (171)
Q Consensus         5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~   84 (171)
                      ++.+||++|+++|.+++++||++.+. ++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+
T Consensus         2 ~~~~Rl~kE~~~l~~~~~~gi~~~p~-~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnV~   80 (154)
T d1yh2a1           2 QRASRLKRELHMLATEPPPGITCWQD-KDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNID   80 (154)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHHCcCCCEEEEEC-CcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCCcC
Confidence            57899999999999999999999996 89999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhhh
Q 030794           85 PDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSVH  154 (171)
Q Consensus        85 ~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~~  154 (171)
                      ++|.||+++|....         .+.|+|++++.+||++|+++|.+          ++.++.++..+|.++++++++++|
T Consensus        81 ~~g~icl~~l~~~~---------~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~k~a  151 (154)
T d1yh2a1          81 SAGRICLDVLKLPP---------KGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHA  151 (154)
T ss_dssp             TTCBBCCGGGSCTT---------TSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CCCCcccccccCCc---------cccCCccccHHHHHHHHHHHhccCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence            99999999996321         26899999999999999999965          345788888999999999999987


Q ss_pred             h
Q 030794          155 S  155 (171)
Q Consensus       155 ~  155 (171)
                      .
T Consensus       152 ~  152 (154)
T d1yh2a1         152 R  152 (154)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=8.3e-41  Score=249.14  Aligned_cols=137  Identities=25%  Similarity=0.453  Sum_probs=128.4

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCc
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN   82 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   82 (171)
                      +..+.|||++||++|++++++|+++.+. ++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++||||
T Consensus         4 ~~~~~kRl~kEl~~l~~~~~~gi~v~p~-~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   82 (151)
T d1zdna1           4 PPHIIRLVYKEVTTLTADPPDGIKVFPN-EEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPN   82 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEEC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCeEEEEc-CcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCCCce
Confidence            4788999999999999999999999986 889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHh
Q 030794           83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      |+.+|.+|++++.             +.|+|+++|.+||..|+++|.+          ++.++.++...|.+++|++++.
T Consensus        83 I~~~G~ic~~~l~-------------~~W~p~~~l~~il~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~ar~~~~~  149 (151)
T d1zdna1          83 VGANGEICVNVLK-------------RDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEI  149 (151)
T ss_dssp             BCTTSBBCHHHHT-------------TTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ecCCCCccccccc-------------ccCCccccHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHh
Confidence            9999999999997             8999999999999999999965          3447788889999999999887


Q ss_pred             h
Q 030794          153 V  153 (171)
Q Consensus       153 ~  153 (171)
                      +
T Consensus       150 ~  150 (151)
T d1zdna1         150 H  150 (151)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=9.4e-41  Score=248.28  Aligned_cols=135  Identities=29%  Similarity=0.475  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCCC
Q 030794            7 SLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPD   86 (171)
Q Consensus         7 ~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~   86 (171)
                      -|||++|+++|+++++.|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus         4 ~kRl~kEl~~l~~~~~~gi~~~p~-~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~   82 (149)
T d1j7db_           4 PRRIIKETQRLLAEPVPGIKAEPD-ESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL   82 (149)
T ss_dssp             CHHHHHHHHHHTTSCCTTEEEEEC-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred             cHHHHHHHHHHHhCCCCCEEEEEC-CCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceECCC
Confidence            389999999999999999999996 8899999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhhhh
Q 030794           87 GKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSVHS  155 (171)
Q Consensus        87 G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  155 (171)
                      |+||+++|.             +.|+|++++.+||.+|+++|.+          ++.++.++..+|.++++++++++|.
T Consensus        83 G~icl~~l~-------------~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~ar~~~~kyA~  148 (149)
T d1j7db_          83 GRICLDILK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM  148 (149)
T ss_dssp             CBBCCGGGT-------------TSCCTTSCHHHHHHHHHHHHHSCCTTCTTCCSHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             CcEehHHhc-------------CCCCCCccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence            999999997             8899999999999999999965          3457888999999999999999874

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=4e-41  Score=251.09  Aligned_cols=137  Identities=25%  Similarity=0.465  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccC
Q 030794            5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVY   84 (171)
Q Consensus         5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~   84 (171)
                      .+.|||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|+|++|||||+
T Consensus         3 ~~~rRl~~E~~~l~~~~~~g~~~~p~-~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~   81 (152)
T d1jata_           3 SLPKRIIKETEKLVSDPVPGITAEPH-DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID   81 (152)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHhCCCCCEEEEEc-CCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCCCcCC
Confidence            45689999999999999999999996 88999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhhh
Q 030794           85 PDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSVH  154 (171)
Q Consensus        85 ~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~~  154 (171)
                      .+|.+|++++.             +.|+|+++|.+||..|+++|.+          ++.++.++..+|.++++++++++|
T Consensus        82 ~~G~icl~~~~-------------~~W~p~~~i~~il~~i~~ll~~P~~~~p~n~eaa~l~~~d~~~f~~~~r~~~~~~a  148 (152)
T d1jata_          82 RLGRICLDVLK-------------TNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA  148 (152)
T ss_dssp             TTCCBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CCCCeeecccc-------------ccCCchhHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHh
Confidence            99999999997             8899999999999999999966          445788889999999999999987


Q ss_pred             h
Q 030794          155 S  155 (171)
Q Consensus       155 ~  155 (171)
                      .
T Consensus       149 ~  149 (152)
T d1jata_         149 K  149 (152)
T ss_dssp             E
T ss_pred             c
Confidence            5

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=5.1e-41  Score=249.00  Aligned_cols=136  Identities=26%  Similarity=0.447  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccC
Q 030794            5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVY   84 (171)
Q Consensus         5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~   84 (171)
                      ++.|||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         1 p~~kRl~~El~~l~~~~~~~i~~~~~-~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   79 (146)
T d1i7ka_           1 PVGKRLQQELMTLMMSGDKGISAFPE-SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD   79 (146)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTEEEEEE-TTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBC
T ss_pred             CHHHHHHHHHHHHhhCCCCCEEEEEc-CCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcccCC
Confidence            47899999999999999999999986 89999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCc----------HHHhhccchhhHHHHHHHHHhhh
Q 030794           85 PDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY----------AWFLMNAGYEYGNTLHSCFLSVH  154 (171)
Q Consensus        85 ~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~----------~~~~~~~~~~~~~~~~~~~~~~~  154 (171)
                      .+|.||+++|.             +.|+|+++|.+||.+|+++|.++          +.++ ++..+|.+.++++++++|
T Consensus        80 ~~G~icl~~l~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~l~-~n~~~f~k~~~~~~~K~~  145 (146)
T d1i7ka_          80 TQGNISLDILK-------------EKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQV  145 (146)
T ss_dssp             TTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTC
T ss_pred             CCCcccccccc-------------ccCCCCcCHHHHHHHHHHHHhCCCCCCchhHHHHHHh-hCHHHHHHHHHHHHHccC
Confidence            99999999997             89999999999999999999762          3455 477889999999998876


Q ss_pred             h
Q 030794          155 S  155 (171)
Q Consensus       155 ~  155 (171)
                      +
T Consensus       146 ~  146 (146)
T d1i7ka_         146 T  146 (146)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=1.1e-40  Score=241.30  Aligned_cols=124  Identities=56%  Similarity=1.121  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCCC
Q 030794            7 SLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPD   86 (171)
Q Consensus         7 ~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~   86 (171)
                      ..||+||+++|++++++|+++.+.+++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+
T Consensus         1 s~~L~kEl~~l~~~~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~   80 (125)
T d2awfa1           1 SLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKN   80 (125)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTT
T ss_pred             CchHHHHHHHHHhCCCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccCCC
Confidence            36999999999999999999998878899999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC
Q 030794           87 GKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN  130 (171)
Q Consensus        87 G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~  130 (171)
                      |.||+++|+..+....+++...++|+|++|+++||++|+++|.+
T Consensus        81 G~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll~~  124 (125)
T d2awfa1          81 GDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLAD  124 (125)
T ss_dssp             CBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSC
T ss_pred             CEEEeccccCccccccccccccCCcCccCcHHHHHHHHHHHhhC
Confidence            99999999887777777888889999999999999999999865

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=1.9e-40  Score=248.40  Aligned_cols=140  Identities=29%  Similarity=0.493  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCC----CCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCcc
Q 030794            5 QASLLLQKQLKDLCKNPVDGFSAGLVDE----SNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH   80 (171)
Q Consensus         5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~----~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   80 (171)
                      .|++||++|+++|+++++.|+++.|.+.    +|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||
T Consensus         2 ~a~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (156)
T d2uyza1           2 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFH   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCS
T ss_pred             hHHHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeecccccc
Confidence            5799999999999999999999998722    289999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHH
Q 030794           81 PNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCF  150 (171)
Q Consensus        81 pnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~  150 (171)
                      |||+.+|.+|+++|..           .++|+|++||.+||.+|+++|.+          ++.++.++..+|.+.+++++
T Consensus        82 PnV~~~G~icl~~l~~-----------~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~  150 (156)
T d2uyza1          82 PNVYPSGTVSLSILEE-----------DKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQA  150 (156)
T ss_dssp             TTBCTTSBBCCGGGCT-----------TTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             ccccccceeeecccCc-----------ccccCCcccHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHH
Confidence            9999999999999962           25799999999999999999965          33467888889999999999


Q ss_pred             Hhhhh
Q 030794          151 LSVHS  155 (171)
Q Consensus       151 ~~~~~  155 (171)
                      +++|.
T Consensus       151 ~k~A~  155 (156)
T d2uyza1         151 KKFAP  155 (156)
T ss_dssp             HHTCC
T ss_pred             HHHCC
Confidence            99874

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=2.1e-40  Score=246.28  Aligned_cols=137  Identities=27%  Similarity=0.514  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCC
Q 030794            6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP   85 (171)
Q Consensus         6 a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~   85 (171)
                      +.|||++|+++|++++++|+++.+.+++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus         2 ~~kRL~~El~~l~~~~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~   81 (149)
T d1fzya_           2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS   81 (149)
T ss_dssp             HHHHHHHHHHHHHTCGGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCcccC
Confidence            67999999999999999999999877889999999999999999999999999999999999999999999999999998


Q ss_pred             -CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhhh
Q 030794           86 -DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSVH  154 (171)
Q Consensus        86 -~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~~  154 (171)
                       +|.+|++++.             +.|+|++||.+||.+|+++|.+          ++.++.++..+|.++++++++++|
T Consensus        82 ~~~~~~~~~~~-------------~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~k~A  148 (149)
T d1fzya_          82 VTGAICLDILK-------------NAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA  148 (149)
T ss_dssp             TTCCBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             Ccceeechhhc-------------ccCCCcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence             7889999886             8999999999999999999975          345788899999999999999987


Q ss_pred             h
Q 030794          155 S  155 (171)
Q Consensus       155 ~  155 (171)
                      +
T Consensus       149 ~  149 (149)
T d1fzya_         149 S  149 (149)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-40  Score=247.10  Aligned_cols=140  Identities=30%  Similarity=0.544  Sum_probs=129.4

Q ss_pred             CchHHHHHHHHHHHHHHhhCC---CCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecC
Q 030794            1 MAKSQASLLLQKQLKDLCKNP---VDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE   77 (171)
Q Consensus         1 Ma~~~a~~Rl~~El~~l~~~~---~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   77 (171)
                      |+ +.|.+||++|+++|.++.   ..++++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         1 Ms-~~a~~Rl~kE~~~l~~~~~~~~~~i~~~~~-~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   78 (154)
T d2bepa1           1 MA-NIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK   78 (154)
T ss_dssp             CC-HHHHHHHHHHHHHHHHCHHHHTTSEEEEEC-SSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             Cc-hHHHHHHHHHHHHHHHCCCCCCCcEEEEcC-CCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceeccc
Confidence            66 899999999999998764   578999986 7899999999999999999999999999999999999999999999


Q ss_pred             CccCccCC-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCc----------HHHhhccchhhHHHH
Q 030794           78 MWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY----------AWFLMNAGYEYGNTL  146 (171)
Q Consensus        78 i~HpnV~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~----------~~~~~~~~~~~~~~~  146 (171)
                      +|||||+. +|.+|++++.             +.|+|++||.+||.+|+++|.++          +.++.++...|.+++
T Consensus        79 i~Hpni~~~~g~ic~~~~~-------------~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a  145 (154)
T d2bepa1          79 IWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTA  145 (154)
T ss_dssp             CCBTTBCTTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHH
T ss_pred             CCCCCeeCCCCcccccccc-------------ccCCCcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHCHHHHHHHH
Confidence            99999997 8999999996             89999999999999999999763          337888999999999


Q ss_pred             HHHHHhhhh
Q 030794          147 HSCFLSVHS  155 (171)
Q Consensus       147 ~~~~~~~~~  155 (171)
                      +++++++|.
T Consensus       146 ~~~t~k~A~  154 (154)
T d2bepa1         146 RLWAHVYAG  154 (154)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHHhcC
Confidence            999999873

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=2.1e-40  Score=246.51  Aligned_cols=137  Identities=29%  Similarity=0.530  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCC
Q 030794            6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP   85 (171)
Q Consensus         6 a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~   85 (171)
                      |.+||++|+++|++++++|+.+.+.+++|++.|++.| ||++|||+||.|+++|.||++||++||+|+|+|++|||||+.
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~~~~~~~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~   79 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE   79 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEecCCCceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcceECC
Confidence            5789999999999999999999998778999999866 899999999999999999999999999999999999999999


Q ss_pred             CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhhhh
Q 030794           86 DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSVHS  155 (171)
Q Consensus        86 ~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  155 (171)
                      +|.||+++|.            .++|+|+++|.+||.+|+++|.+          ++.++.++..+|.++++++++++|.
T Consensus        80 ~G~icl~~l~------------~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~a~~~~~kya~  147 (150)
T d1wzva1          80 NGQICLPIIS------------SENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGV  147 (150)
T ss_dssp             TCBCCCGGGC------------TTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCE
T ss_pred             CCCccccccc------------ccCCCchhHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence            9999999996            37899999999999999999965          3457888999999999999999874

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=3e-40  Score=247.25  Aligned_cols=135  Identities=33%  Similarity=0.587  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccC
Q 030794            5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVY   84 (171)
Q Consensus         5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~   84 (171)
                      .+.|||++|+++|++++++|+++.|. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         9 ~~~kRl~kEl~~l~~~~~~gi~~~p~-~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   87 (156)
T d2e2ca_           9 SVSKRLQQELRTLLMSGDPGITAFPD-GDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD   87 (156)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTEEEEES-SSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHhHCCCCCEEEEEC-CCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccCcCCCCC
Confidence            47899999999999999999999995 89999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhhh
Q 030794           85 PDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSVH  154 (171)
Q Consensus        85 ~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~~  154 (171)
                      .+|.||+++|.             +.|+|+++|.+||.+|+++|.+          ++.++. +..+|.+.++++++...
T Consensus        88 ~~G~icl~~l~-------------~~Wsp~~~i~~vl~~i~~ll~~P~~~~p~n~~aa~l~~-n~~~y~k~~~e~~~~~~  153 (156)
T d2e2ca_          88 QSGNICLDILK-------------ENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHEKYKTAQ  153 (156)
T ss_dssp             TTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred             CCCCccccccC-------------CCCCCcccHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-CHHHHHHHHHHHHHHHh
Confidence            99999999996             8899999999999999999965          233454 55689999988887654

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=3.4e-40  Score=245.06  Aligned_cols=135  Identities=31%  Similarity=0.553  Sum_probs=122.4

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCc
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN   82 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   82 (171)
                      +++|.+||+||++++++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         2 ~~~a~~~L~kE~~~l~~~~~~gi~v~p~-~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   80 (148)
T d1yrva1           2 HGRAYLLLHRDFCDLKENNYKGITAKPV-SEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPN   80 (148)
T ss_dssp             GCHHHHHHHHHHHHHHHHCCTTEEEEEC-STTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTT
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEEEEC-CCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccccccCc
Confidence            4899999999999999999999999997 889999999999999999999999999999999999999999999999999


Q ss_pred             cCC-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHH
Q 030794           83 VYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSC  149 (171)
Q Consensus        83 V~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~  149 (171)
                      |+. +|+||+++|..           .++|+|++||.+||.+|+++|.+          ++.++.++..+|.+.+|.+
T Consensus        81 V~~~~G~iC~~~l~~-----------~~~W~p~~tl~~vL~~I~~ll~~p~~~~p~n~eaa~ly~~~~~~f~~~~r~~  147 (148)
T d1yrva1          81 VDPHTGQPCIDFLDN-----------PEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLF  147 (148)
T ss_dssp             BCTTTCCBCCHHHHC-----------GGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHHHHHH
T ss_pred             eecCcccccccccCc-----------hhhcCccccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHhh
Confidence            995 89999999851           26899999999999999999965          3346777777777777754

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-40  Score=237.28  Aligned_cols=114  Identities=37%  Similarity=0.669  Sum_probs=106.1

Q ss_pred             CchHHHHHHHHHHHHHHhhCCCCCeEEEec-CCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCC-
Q 030794            1 MAKSQASLLLQKQLKDLCKNPVDGFSAGLV-DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM-   78 (171)
Q Consensus         1 Ma~~~a~~Rl~~El~~l~~~~~~~i~~~~~-~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-   78 (171)
                      ||  .+.|||++|+++|++++++|+++.+. +++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ 
T Consensus         1 m~--~~~kRL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~   78 (117)
T d2a7la1           1 MA--SMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENI   78 (117)
T ss_dssp             GT--TSCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCC
T ss_pred             CC--cHHHHHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCc
Confidence            67  46799999999999999999988753 367899999999999999999999999999999999999999999986 


Q ss_pred             -ccCccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhc
Q 030794           79 -WHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVL  129 (171)
Q Consensus        79 -~HpnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~  129 (171)
                       |||||+.+|+||+++|.             ++|+|++||++||++|+++|.
T Consensus        79 ~~Hpnv~~~G~iCl~~l~-------------~~Wsp~~ti~~vl~~i~~lLs  117 (117)
T d2a7la1          79 PVHPHVYSNGHICLSILT-------------EDWSPALSVQSVCLSIISMLS  117 (117)
T ss_dssp             CCBTTBCTTCBBCCGGGT-------------TTCCTTSCHHHHHHHHHHHTC
T ss_pred             cccccCcCCCeEEeecCc-------------CCCCCcCcHHHHHHHHHHHhC
Confidence             99999999999999996             889999999999999999873

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=4.1e-40  Score=243.47  Aligned_cols=134  Identities=28%  Similarity=0.526  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCCC
Q 030794            7 SLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPD   86 (171)
Q Consensus         7 ~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~   86 (171)
                      +|||++|+++|++++.+|+.+.+.+++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus         1 ~rRl~kEl~~l~~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~   79 (144)
T d1c4zd_           1 SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEK   79 (144)
T ss_dssp             CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred             CHHHHHHHHHHHhCCCCCeEEEECCCCcceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCccC
Confidence            389999999999999999998888788999999998 9999999999999999999999999999999999999999999


Q ss_pred             CceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHhh
Q 030794           87 GKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSV  153 (171)
Q Consensus        87 G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~  153 (171)
                      |.||+++|.            .+.|+|++++.+||.+|+++|.+          ++.++.++...|.++++++++++
T Consensus        80 G~icl~~l~------------~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~ky  144 (144)
T d1c4zd_          80 GQVCLPVIS------------AENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY  144 (144)
T ss_dssp             CBBCCTTTS------------SSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC
T ss_pred             Ccccccccc------------CCCCCCcccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999997            37899999999999999999966          34478888999999999998764

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=9.2e-39  Score=240.27  Aligned_cols=136  Identities=28%  Similarity=0.575  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHhh-------------CCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCee
Q 030794            6 ASLLLQKQLKDLCK-------------NPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTV   72 (171)
Q Consensus         6 a~~Rl~~El~~l~~-------------~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v   72 (171)
                      ..+||+||+++|++             +...|+++.+. ++|+++|+++|.||++|||+||.|+|+|.||++||++||+|
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V   80 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIV-GGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKM   80 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEec-CCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEE
Confidence            57899999999977             44568999998 78999999999999999999999999999999999999999


Q ss_pred             EEecCCccCccCC-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchh
Q 030794           73 RFTSEMWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYE  141 (171)
Q Consensus        73 ~f~t~i~HpnV~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~  141 (171)
                      +|+|++|||||+. +|.||++++.             +.|+|+++|.+||.+|+++|.+          ++.++.++..+
T Consensus        81 ~F~t~i~HPni~~~~G~icl~~l~-------------~~W~p~~si~~iL~~I~~ll~~P~~~dp~n~eaa~l~~~d~~~  147 (161)
T d2f4za1          81 KFVTKIWHPNISSQTGAICLDILK-------------HEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPL  147 (161)
T ss_dssp             EESSCCCBTTBCTTTCBBCCGGGT-------------TTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHH
T ss_pred             EecCCCCCCceECCCCCeecCccc-------------ccCCCcccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHH
Confidence            9999999999865 8999999996             7899999999999999999976          34478899999


Q ss_pred             hHHHHHHHHHhhhh
Q 030794          142 YGNTLHSCFLSVHS  155 (171)
Q Consensus       142 ~~~~~~~~~~~~~~  155 (171)
                      |.++|+++++++|+
T Consensus       148 y~~~v~~~t~~~a~  161 (161)
T d2f4za1         148 FVQTAKLWTETFAK  161 (161)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999999874

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=100.00  E-value=2.1e-38  Score=224.15  Aligned_cols=107  Identities=27%  Similarity=0.577  Sum_probs=103.1

Q ss_pred             HHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCC-ccCccCCCC
Q 030794            9 LLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEM-WHPNVYPDG   87 (171)
Q Consensus         9 Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HpnV~~~G   87 (171)
                      ||+||+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ +||||+.+|
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~~~-~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~~~G   80 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLDVH-PNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNG   80 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEEC-TTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTS
T ss_pred             HHHHHHHHHHhCCCCCEEEEEc-CCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceECCCC
Confidence            9999999999999999999985 89999999999999999999999999999999999999999999985 899999999


Q ss_pred             ceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhc
Q 030794           88 KVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVL  129 (171)
Q Consensus        88 ~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~  129 (171)
                      +||+++|.             ++|+|++|+++||++|+++|.
T Consensus        81 ~iCl~il~-------------~~Wsp~~ti~~vl~~i~~lls  109 (109)
T d2fo3a1          81 DICLSLLG-------------DDYNPSLSISGLVLSIISMLS  109 (109)
T ss_dssp             BBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHC
T ss_pred             eEEeeccc-------------CCCCccCCHHHHHHHHHHHhC
Confidence            99999997             899999999999999999873

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=100.00  E-value=2.4e-37  Score=231.65  Aligned_cols=135  Identities=27%  Similarity=0.471  Sum_probs=121.8

Q ss_pred             hHHHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCc
Q 030794            3 KSQASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPN   82 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   82 (171)
                      ++.|.+||++|+++|++.  +++.+...+++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.+++||||
T Consensus         1 ~~~a~~Rl~kEl~~l~~~--~~~~i~~~~~~~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~HPn   77 (157)
T d1y8xa1           1 ASAAQLRIQKDINELNLP--KTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN   77 (157)
T ss_dssp             CCHHHHHHHHHHHTCCCC--TTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred             CCHHHHHHHHHHHHhCCC--CCCcEEEcCCCcceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCCcc
Confidence            478999999999999754  46666666789999999988 899999999999999999999999999999999999999


Q ss_pred             cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcC----------cHHHhhccchhhHHHHHHHHHh
Q 030794           83 VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLN----------YAWFLMNAGYEYGNTLHSCFLS  152 (171)
Q Consensus        83 V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~  152 (171)
                      |+.+|.||++++.             +.|+|+++|.+||.+|+++|.+          ++.++.++..+|.++++++++.
T Consensus        78 v~~~G~ic~~~~~-------------~~W~p~~~i~~il~~I~~ll~~Pn~~~p~n~eaa~l~~~~~~~f~~~v~~~~~~  144 (157)
T d1y8xa1          78 IDLEGNVCLNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG  144 (157)
T ss_dssp             BCTTCBBCCGGGT-------------TTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred             ccccceeeeeecc-------------cCCCCCCcHHHHHHHHHHHHcCCCCcChHHHHHHHHHHHCHHHHHHHHHHHHcC
Confidence            9999999999986             8999999999999999999965          3337888889999999999875


Q ss_pred             h
Q 030794          153 V  153 (171)
Q Consensus       153 ~  153 (171)
                      .
T Consensus       145 ~  145 (157)
T d1y8xa1         145 G  145 (157)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=100.00  E-value=8.5e-36  Score=223.11  Aligned_cols=116  Identities=24%  Similarity=0.523  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccC
Q 030794            5 QASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVY   84 (171)
Q Consensus         5 ~a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~   84 (171)
                      +|.|||++|+++|++++++|+++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++|+|++
T Consensus         1 tA~kRl~kE~~~l~~~p~~g~~~~p~-~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~   79 (157)
T d2f4wa1           1 TATQRLKQDYLRIKKDPVPYICAEPL-PSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCN   79 (157)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCTT
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEEEc-CcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccCCC
Confidence            48999999999999999999999996 88999999999999999999999999999999999999999999998887776


Q ss_pred             CCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH
Q 030794           85 PDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW  133 (171)
Q Consensus        85 ~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~  133 (171)
                        |.+|+.++.          ...++|+|++||.+||++|+++|.++.+
T Consensus        80 --g~~~~~~l~----------~~~~~Wsp~~ti~~il~~i~~ll~~p~p  116 (157)
T d2f4wa1          80 --TRLCLSITD----------FHPDTWNPAWSVSTILTGLLSFMVEKGP  116 (157)
T ss_dssp             --SCBC--------------------CCTTCCHHHHHHHHHHHHHSCCC
T ss_pred             --CCeeeeecc----------ccCCCCCccCcHHHHHHHHHHHccCCCC
Confidence              555554442          1137899999999999999999987554

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=100.00  E-value=1e-35  Score=217.75  Aligned_cols=119  Identities=27%  Similarity=0.408  Sum_probs=104.0

Q ss_pred             hHHHHHHHHHHHHHHhhCCC-CCeEEEecCCC--CceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCc
Q 030794            3 KSQASLLLQKQLKDLCKNPV-DGFSAGLVDES--NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMW   79 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~-~~i~~~~~~~~--n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   79 (171)
                      ..++.+||.|||++++++.+ .++++.+.+++  |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|
T Consensus         2 ~~p~~~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~   81 (136)
T d1jatb_           2 KVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN   81 (136)
T ss_dssp             CCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             CCchHHHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEecccc
Confidence            35789999999999999865 45666665444  4999999999999999999999999999999999999999999999


Q ss_pred             cCccCC-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH
Q 030794           80 HPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW  133 (171)
Q Consensus        80 HpnV~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~  133 (171)
                      ||||+. +|.||++++.            .++|+|++||.+||++|+++|.++.+
T Consensus        82 HpnV~~~~G~icl~~l~------------~~~Wsp~~ti~~IL~~i~~lL~~P~n  124 (136)
T d1jatb_          82 LPCVNPTTGEVQTDFHT------------LRDWKRAYTMETLLLDLRKEMATPAN  124 (136)
T ss_dssp             CTTBCTTTCBBCTTSHH------------HHTCCTTCCHHHHHHHHHHHHTSHHH
T ss_pred             ccccccCCCeEECCCCc------------ccCcCccCcHHHHHHHHHHHHcCCCC
Confidence            999996 6999999875            27899999999999999999987655

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=100.00  E-value=5.5e-35  Score=214.61  Aligned_cols=119  Identities=23%  Similarity=0.377  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCeEEEecC---CCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCcc
Q 030794            4 SQASLLLQKQLKDLCKNPVDGFSAGLVD---ESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWH   80 (171)
Q Consensus         4 ~~a~~Rl~~El~~l~~~~~~~i~~~~~~---~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   80 (171)
                      -++.+||+|||+++++++++++.+.+.+   ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         4 ~~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~H   83 (139)
T d2a4da1           4 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM   83 (139)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             cchhHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence            3689999999999999999987766642   3379999999999999999999999999999999999999999999999


Q ss_pred             CccCC-CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcHH
Q 030794           81 PNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYAW  133 (171)
Q Consensus        81 pnV~~-~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~~  133 (171)
                      |||+. +|.+|++.+..           .++|+|++||++||++|+++|.++++
T Consensus        84 pnV~~~~g~~~~~~l~~-----------l~~Wsp~~ti~~iL~~i~slL~~peN  126 (139)
T d2a4da1          84 NGVNSSNGVVDPRAISV-----------LAKWQNSYSIKVVLQELRRLMMSKEN  126 (139)
T ss_dssp             TTBCTTTCBBCGGGSHH-----------HHTCCTTCCHHHHHHHHHHHHTSTTT
T ss_pred             ccCcCCCCEEcceecCc-----------ccCCCccCcHHHHHHHHHHHHCCCCC
Confidence            99987 57776655521           15799999999999999999987544

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=1.4e-35  Score=222.06  Aligned_cols=134  Identities=22%  Similarity=0.434  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHhhCCCCCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEEEEEcCCCCCCCCCeeEEecCCccCccCC
Q 030794            6 ASLLLQKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP   85 (171)
Q Consensus         6 a~~Rl~~El~~l~~~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~   85 (171)
                      +.|||++|+++|.+++..   +.+  .+|+++|+++|.||++|||+||.|+++|.||++||.+||+|+|.|++|||||+.
T Consensus         1 ~~rr~~~e~~~l~~~~~~---~~~--~d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~   75 (158)
T d1yf9a1           1 SNRRREMDYMRLCNSTRK---VYP--SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE   75 (158)
T ss_dssp             CCHHHHHHHHHHHSSSSC---EEE--CSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred             CchHHHHHHHHHhcCCCc---CCC--CCCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCCcc
Confidence            368999999999987743   555  479999999999999999999999999999999999999999999999999987


Q ss_pred             -CCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHH-HHHhhcC----------cHHHhhccchhhHHHHHHHHHhh
Q 030794           86 -DGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRS-LSPGVLN----------YAWFLMNAGYEYGNTLHSCFLSV  153 (171)
Q Consensus        86 -~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~-i~~ll~~----------~~~~~~~~~~~~~~~~~~~~~~~  153 (171)
                       +|.||+++|.             +.|+|++++.++|.. |+.||..          ++.++.++..+|.++++++++++
T Consensus        76 ~~G~vcl~il~-------------~~W~p~~~i~~il~~~i~~ll~~P~~~~p~N~eaa~l~~~n~~~f~~~~k~~~~k~  142 (158)
T d1yf9a1          76 RSGSVCLDVIN-------------QTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTH  142 (158)
T ss_dssp             TTCBBCHHHHH-------------HHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             Ccccccccccc-------------cccCchHhhhhHHHHHHHHHhcCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence             8999999997             889999999999976 5566643          34478899999999999999998


Q ss_pred             hhhh
Q 030794          154 HSVA  157 (171)
Q Consensus       154 ~~~~  157 (171)
                      |...
T Consensus       143 a~~~  146 (158)
T d1yf9a1         143 ATPQ  146 (158)
T ss_dssp             CCHH
T ss_pred             CChh
Confidence            8543

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=222.48  Aligned_cols=117  Identities=25%  Similarity=0.520  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHHHHHHhhCCC--CC-eEEEecCCCCceEEEEEEEC-CCCCCCCCcE-----------EEEEEEcCCCCCC
Q 030794            3 KSQASLLLQKQLKDLCKNPV--DG-FSAGLVDESNVFEWSVSIIG-PPDTLYEGGF-----------FNAIMTFPDNYPV   67 (171)
Q Consensus         3 ~~~a~~Rl~~El~~l~~~~~--~~-i~~~~~~~~n~~~w~~~i~G-p~~tpy~gg~-----------f~~~i~fp~~YP~   67 (171)
                      |.+|++||+|||++|++++.  .| +.+.+. ++|+++|++.|.| |++|||++|.           |+++|.||++||+
T Consensus         2 s~~a~~RL~kEl~~l~k~~~~~~~~~~v~~~-~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~   80 (162)
T d1zuoa1           2 SVQASDRLMKELRDIYRSQSYKTGIYSVELI-NDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPF   80 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEE-TTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTS
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCeEEeecC-CCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhh
Confidence            67899999999999998875  34 456665 7899999999999 8999999886           9999999999999


Q ss_pred             CCCeeEEecCCccCc-cCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCcH
Q 030794           68 SPPTVRFTSEMWHPN-VYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNYA  132 (171)
Q Consensus        68 ~pP~v~f~t~i~Hpn-V~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~~  132 (171)
                      +||+|+|+|++|||| ++.+|.||+++|+            .++|+|++||++||++|+++|.+++
T Consensus        81 ~PP~v~f~t~i~hpn~~~~~G~iCl~iL~------------~~~WsP~~ti~~IL~~i~~ll~~~~  134 (162)
T d1zuoa1          81 DPPFVRVVLPVLSGGYVLGGGALCMELLT------------KQGWSSAYSIESVIMQINATLVKGK  134 (162)
T ss_dssp             SCCEEEEEESCEESTTBCGGGBBCCGGGS------------TTTCCTTSCHHHHHHHHHHHHHHTT
T ss_pred             hcceEEEEEEeeccccccCCceeeccccc------------CCCCCCcccHHHHHHHHHHHHcCCC
Confidence            999999999999998 5779999999997            3789999999999999999997643

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.5e-21  Score=141.55  Aligned_cols=111  Identities=15%  Similarity=0.219  Sum_probs=90.9

Q ss_pred             HHHHHHHHHhhCCC---CCeEEEecCCCCceEEEEEEECCCCCCCCCcEEEE--EEEcCCCCCCCCCeeEEecC-----C
Q 030794            9 LLQKQLKDLCKNPV---DGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNA--IMTFPDNYPVSPPTVRFTSE-----M   78 (171)
Q Consensus         9 Rl~~El~~l~~~~~---~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~-----i   78 (171)
                      +.++|+.++.+.-+   ++..+... +|+...|.+.|.|+.+++|+||.|++  .|.||.+||++||.|.|.+.     +
T Consensus        18 ~~~~d~~~~l~~~~~l~p~~~~f~~-~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~   96 (141)
T d1s1qa_          18 LTVRETVNVITLYKDLKPVLDSYVF-NDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIK   96 (141)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEEC-TTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEEC
T ss_pred             hHHHHHHHHHHhCCCCCCccceEEe-CCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCcccc
Confidence            45667777766543   45555554 77899999999999999999999999  45589999999999988754     6


Q ss_pred             ccCccCCCCceeeccCCCCCCCCCCCCCCCCCCC-ccCcHHHHHHHHHHhhcCcHHH
Q 030794           79 WHPNVYPDGKVCISILHPPGDDPNGYELATERWT-PVHTAASVWRSLSPGVLNYAWF  134 (171)
Q Consensus        79 ~HpnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~-p~~~l~~il~~i~~ll~~~~~~  134 (171)
                      +||||+.+|+||++.|.              .|. +..+|.+++..|+++|..++++
T Consensus        97 ~h~~V~~~G~V~lp~L~--------------~W~~~~s~L~~ll~~L~~~f~~e~Pl  139 (141)
T d1s1qa_          97 TGKHVDANGKIYLPYLH--------------EWKHPQSDLLGLIQVMIVVFGDEPPV  139 (141)
T ss_dssp             CSSSBCTTCBBCCHHHH--------------TCCTTTCCHHHHHHHHHHHHHHSCSE
T ss_pred             CCCeECCCCCCcchhhc--------------CCCcccccHHHHHHHHHHHhCCCCCC
Confidence            89999999999999994              465 5669999999999998776553

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1.8e-17  Score=122.16  Aligned_cols=111  Identities=20%  Similarity=0.137  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHhhCCC---CCeEEEecCCCCceEEEEEEECCCCCCCCCcE---EEEEEEcCCCCCCCCCeeEEecC---
Q 030794            7 SLLLQKQLKDLCKNPV---DGFSAGLVDESNVFEWSVSIIGPPDTLYEGGF---FNAIMTFPDNYPVSPPTVRFTSE---   77 (171)
Q Consensus         7 ~~Rl~~El~~l~~~~~---~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t~---   77 (171)
                      .+|+.+|+..+.++-+   +....... +|......+.+.|.-..+|+|+.   |.+.|.||++||++||.|+|.++   
T Consensus        21 ~~~v~~dv~~~l~~y~~L~p~~~~~~~-~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~   99 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFHSLRPRTRVFTH-SDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFD   99 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEEC-TTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTTCC
T ss_pred             cchHHHHHHHHHHhCCCCCcccceeec-CCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCccc
Confidence            4578888888776643   12222222 45566788889998899999995   67778899999999999999765   


Q ss_pred             --------CccCccCCCCceeeccCCCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHhhcCc
Q 030794           78 --------MWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTAASVWRSLSPGVLNY  131 (171)
Q Consensus        78 --------i~HpnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W~p~~~l~~il~~i~~ll~~~  131 (171)
                              ++||||+.+|+||++.|.             +-|.|+.+|.+++..|+.+|.++
T Consensus       100 ~~~~~~~i~~hp~Vd~~G~V~lp~L~-------------~W~~~~s~L~~ll~~l~~~f~~~  148 (152)
T d1uzxa_         100 MNTISSSLPIQEYIDSNGWIALPILH-------------CWDPAAMNLIMVVQELMSLLHEP  148 (152)
T ss_dssp             SCC----CGGGGGBCTTSCBCCHHHH-------------SCCTTTCCHHHHHHHHHTGGGSC
T ss_pred             ccCCCcccccCCCCCCCCcEehHHhc-------------CCCCccCcHHHHHHHHHHHhcCC
Confidence                    569999999999999995             44567889999999999998654

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=4.1e-06  Score=58.97  Aligned_cols=91  Identities=20%  Similarity=0.306  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHhh-------CCCCCeEEEecCCCCceEEEEEEECCCCCCCCC----------cEEEEEEEcCCCCCC
Q 030794            5 QASLLLQKQLKDLCK-------NPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEG----------GFFNAIMTFPDNYPV   67 (171)
Q Consensus         5 ~a~~Rl~~El~~l~~-------~~~~~i~~~~~~~~n~~~w~~~i~Gp~~tpy~g----------g~f~~~i~fp~~YP~   67 (171)
                      .-.+||++||+.|-+       +..+-+.++..              +++|-|.|          -.|.+++.+|..||.
T Consensus        25 ~W~~RLKEEy~aLI~Yv~nNK~~dndWF~lesn--------------~~GT~W~GkCWyihnl~kYeFd~eFdIP~tYP~   90 (162)
T d2in1a1          25 LWVQRLKEEYQSLIRYVENNKNADNDWFRLESN--------------KEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPT   90 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEC--------------TTSSEEEEEEEEEETTEEEEEEEEEECCTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCeEEeccC--------------CCCCeeeceeeEEEeeeEEEEEEEeccCCCCCC
Confidence            467899999998743       22334444432              34444443          235666778999999


Q ss_pred             CCCeeEEecC-CccCccCCCCceeeccCCCCCCCCCCCCCCCCCC---CccCcHHHHH
Q 030794           68 SPPTVRFTSE-MWHPNVYPDGKVCISILHPPGDDPNGYELATERW---TPVHTAASVW  121 (171)
Q Consensus        68 ~pP~v~f~t~-i~HpnV~~~G~iCl~~l~~~~~~~~~~~~~~~~W---~p~~~l~~il  121 (171)
                      .||.|....- --..-.|.+|+|||+.-.            ..-|   .|.+.|...|
T Consensus        91 t~pEi~lPeLdGKTaKMYRGGkIClt~HF------------kPLWarN~PkfGIaHal  136 (162)
T d2in1a1          91 TAPEIAVPELDGKTAKMYRGGKICLTDHF------------KPLWARNVPKFGLAHLM  136 (162)
T ss_dssp             SCCCCBCGGGSSSCSSSCGGGBCCCCTTS------------HHHHHTTTTSCCHHHHH
T ss_pred             CCcceeccccCCchhhhhcCceeeccccc------------hhhhhhcCCchhHHHHH
Confidence            9999976432 123356779999998653            1223   4666777766

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0093  Score=39.57  Aligned_cols=67  Identities=15%  Similarity=0.188  Sum_probs=43.2

Q ss_pred             HHHHHHHHhhCCCCCeEEEecCCCCce--EEEEEEECC--CCCCCCCcEEEEEEEcCCCCCCCCCeeEEecC
Q 030794           10 LQKQLKDLCKNPVDGFSAGLVDESNVF--EWSVSIIGP--PDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE   77 (171)
Q Consensus        10 l~~El~~l~~~~~~~i~~~~~~~~n~~--~w~~~i~Gp--~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   77 (171)
                      +..|+..|+.--+..+..... .++..  ...+.+...  .+..-......+.+.+|++||..+|.+.+.+.
T Consensus         6 ~~~EleaL~SIY~d~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~~~   76 (115)
T d2daya1           6 LPSEVEVLESIYLDELQVIKG-NGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP   76 (115)
T ss_dssp             HHHHHHHHHHHSTTTEEEECC-TTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             HHHHHHHHHhHCCCceEEecc-CCCCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEeecc
Confidence            578999998877777765532 33333  344444421  11122235688999999999999999987643

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.43  E-value=0.29  Score=32.85  Aligned_cols=71  Identities=14%  Similarity=0.035  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHhhCCCCCeEEEecCCC----CceEEEEEEECC-CCCCCCCcEEEEEEEcCCCCCCCCCeeEEecC
Q 030794            7 SLLLQKQLKDLCKNPVDGFSAGLVDES----NVFEWSVSIIGP-PDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSE   77 (171)
Q Consensus         7 ~~Rl~~El~~l~~~~~~~i~~~~~~~~----n~~~w~~~i~Gp-~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   77 (171)
                      ..+-..|+..|..--+..+.....+..    ......+.+... .+.......+.+.+.||.+||..+|.+.+...
T Consensus        12 ~E~Q~~EleaL~SIY~dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P~i~~~~~   87 (137)
T d1ukxa_          12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNA   87 (137)
T ss_dssp             HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCceEEecccccccccCCCeEEEEEeccCCCCccceEEEEEEEECCCCCCcccceEEEecC
Confidence            345577888887766555554321111    111334445421 22233446789999999999999999987643

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.36  E-value=0.11  Score=34.91  Aligned_cols=25  Identities=20%  Similarity=0.436  Sum_probs=21.0

Q ss_pred             CCcEEEEEEEcCCCCCCCCCeeEEe
Q 030794           51 EGGFFNAIMTFPDNYPVSPPTVRFT   75 (171)
Q Consensus        51 ~gg~f~~~i~fp~~YP~~pP~v~f~   75 (171)
                      ..-...+.+.+|.+||..+|.|.+.
T Consensus        64 ~~~~l~L~~~lP~~YP~~~P~i~l~   88 (140)
T d2daxa1          64 KMAMFSLACILPFKYPAVLPEITVR   88 (140)
T ss_dssp             CEEEEEEEEEECSSTTSSCCCCEEE
T ss_pred             cCceEEEEEEecCcCCCcCCceecc
Confidence            3456889999999999999999764

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.41  E-value=0.18  Score=33.99  Aligned_cols=23  Identities=17%  Similarity=0.169  Sum_probs=19.8

Q ss_pred             cEEEEEEEcCCCCCCCCCeeEEe
Q 030794           53 GFFNAIMTFPDNYPVSPPTVRFT   75 (171)
Q Consensus        53 g~f~~~i~fp~~YP~~pP~v~f~   75 (171)
                      -.+.+.+.+|++||..+|.|.+.
T Consensus        68 ~~i~L~~~lp~~YP~~~P~i~~~   90 (141)
T d2dawa1          68 VKIDLQVTMPHSYPYLALQLFGR   90 (141)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEE
T ss_pred             ceEEEEEEeCCCCCCCCCCceee
Confidence            45788899999999999999765