Citrus Sinensis ID: 030828

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVMKKS
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEEEEEccccccccccHHHHHHccccccEEEEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEEEEEEcccccHHHccHHHHccccccEEEEEEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHcHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mqaqkeappdmqckdkfllqsvktndgttakDINAEMFNKEAGHVVEECKLRViyvsppqppspvpegseegssprgsvsdnghvnSAEFAAAARAFTERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRegkknrggvSFIFVILVGLVGIVLGYVMKKS
Flexible Loop (DISEMBL)
mqaqkeappdmqckdkflLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISklkdeknnavqqnnklrqdlELLRregkknrggvsfIFVILVGLVGIVLGYVMKKS
Low Complexity Region (SEG)
MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYvsppqppspvpegseegssprgsvsDNGHVNSaefaaaarafterIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNRGGVSfifvilvglvgivlgYVMKKS
Disordered region (IsUnstruct)
********************************INAEMFNKEAGHVVEECKLRVIYV******************************************************************************************GGVSFIFVILVGLVGIVLGYVM***
Disordered Region (DISOPRED)
*****EAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV*************************************************************************************************VILVGLVGIVLGYVMKK*
Disordered Region (DISEMBL)
**********MQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPP*********************DNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVMKKS
Disordered Region (DISPRO)
*******PPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPP*************************************************EARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVMKKS
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGKKNRGGVSFIFVILVGLVGIVLGYVMKKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
Q9SHC8	239	Vesicle-associated protei	yes	no	0.988	0.707	0.633	3e-53
Q8VZ95	256	Vesicle-associated protei	no	no	0.988	0.660	0.610	4e-49
Q84WW5	239	Vesicle-associated protei	no	no	0.970	0.694	0.561	5e-43
Q9SYC9	571	Vesicle-associated protei	no	no	0.508	0.152	0.659	8e-29
Q9LVU1	220	Vesicle-associated protei	no	no	0.807	0.627	0.333	4e-22
O82213	149	Vesicle-associated protei	no	no	0.333	0.382	0.631	4e-14
B9DHD7	386	Vesicle-associated protei	no	no	0.461	0.204	0.493	6e-13
O60119	383	Vesicle-associated membra	yes	no	0.508	0.227	0.369	0.0001

>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1

 Score =  207 bits (526), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 109/172 (63%), Positives = 144/172 (83%), Gaps = 3/172 (1%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
           MQAQKEAP D+QCKDKFLLQ V  + G T KD+  EMF+KEAGH VEE KLRV+YV+PP+
Sbjct: 70  MQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVVYVAPPR 129

Query: 61  PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDE 120
           PPSPV EGSEEGSSPR SVSDNG  N+++F AA R   +R++ QD S+EARAL++KL +E
Sbjct: 130 PPSPVREGSEEGSSPRASVSDNG--NASDFTAAPRFSADRVDAQDNSSEARALVTKLTEE 187

Query: 121 KNNAVQQNNKLRQDLELLRREGKKNR-GGVSFIFVILVGLVGIVLGYVMKKS 171
           KN+AVQ NN+L+Q+L+ LRRE K+++ GG+ F++V+LVGL+G++LGY+MK++
Sbjct: 188 KNSAVQLNNRLQQELDQLRRESKRSKSGGIPFMYVLLVGLIGLILGYIMKRT 239

Vesicle-associated protein that binds the oxysterol-binding protein ORP3A and allows its targeting to the ER.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1

 Score =  193 bits (491), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 105/172 (61%), Positives = 138/172 (80%), Gaps = 3/172 (1%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
           MQAQKEAP DMQCKDKFLLQ V  + G TAK++  EMF+KEAGH VEE KLRV YV+PP+
Sbjct: 87  MQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYVAPPR 146

Query: 61  PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDE 120
           PPSPV EGSEEGSSPR SVSDNGH   +EF+        +  HQ+ ++EARALI+KL +E
Sbjct: 147 PPSPVHEGSEEGSSPRASVSDNGH--GSEFSFERFIVDNKAGHQENTSEARALITKLTEE 204

Query: 121 KNNAVQQNNKLRQDLELLRREGKKNR-GGVSFIFVILVGLVGIVLGYVMKKS 171
           K +A+Q NN+L+++L+ LRRE KK++ GG+ F++V+LVGL+G++LGY+MK++
Sbjct: 205 KQSAIQLNNRLQRELDQLRRESKKSQSGGIPFMYVLLVGLIGLILGYIMKRT 256

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1

 Score =  173 bits (438), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 130/171 (76%), Gaps = 5/171 (2%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
           MQAQKEAP DMQCKDKFL+Q+V  +DGTT+K++ AEMFNKEAG V+E+ KLRV+Y+ P  
Sbjct: 72  MQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYI-PAN 130

Query: 61  PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDE 120
           PPSPVPEGSEEG+SP  S++D    +++ F   +R F E  E   KS+EA ++ISKL +E
Sbjct: 131 PPSPVPEGSEEGNSPMASLNDIASQSASLFDDVSRTFEETSE---KSSEAWSMISKLTEE 187

Query: 121 KNNAVQQNNKLRQDLELLRRE-GKKNRGGVSFIFVILVGLVGIVLGYVMKK 170
           K +A QQ+ KLR +LE+LR+E  KK  GG S + ++LVGL+G V+GY++ +
Sbjct: 188 KTSATQQSQKLRLELEMLRKETSKKQSGGHSLLLMLLVGLLGCVIGYLLNR 238

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score =  126 bits (316), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 69/88 (78%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
           MQA KEAP DMQC+DK L Q       TTAKD+ +EMF+KEAGH  EE +L+V+YV+PPQ
Sbjct: 241 MQALKEAPADMQCRDKLLFQCKVVEPETTAKDVTSEMFSKEAGHPAEETRLKVMYVTPPQ 300

Query: 61  PPSPVPEGSEEGSSPRGSVSDNGHVNSA 88
           PPSPV EG+EEGSSPR SVSDNG+ + A
Sbjct: 301 PPSPVQEGTEEGSSPRASVSDNGNASEA 328

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1

 Score =  103 bits (258), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 33/171 (19%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
           +QAQ+E PPDMQCKDKFLLQS      T   ++  + F K++G  + ECKL+V Y++P  
Sbjct: 74  LQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYITP-- 131

Query: 61  PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDE 120
                   + + SS  G+ + +G                      +S+E  + I +LK+E
Sbjct: 132 -------STTQRSSESGATNGDG----------------------QSSETISTIQRLKEE 162

Query: 121 KNNAVQQNNKLRQDLELL-RREGKKNRG-GVSFIFVILVGLVGIVLGYVMK 169
           ++ AV+Q  +L+ +LE + RR  ++N G G+S     +VGL+G+++G+++K
Sbjct: 163 RDAAVKQTQQLQHELETVRRRRNQRNSGNGLSLKLAAMVGLIGLIIGFILK 213

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 44/57 (77%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS 57
           MQAQKE P DMQ  +KF++QSV  + G TAK++  EMF+KE+GHVVEE KLRV YV 
Sbjct: 71  MQAQKEVPSDMQSFEKFMIQSVLASPGVTAKEVTREMFSKESGHVVEETKLRVTYVC 127

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 51/83 (61%), Gaps = 4/83 (4%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
           MQA KE PPDM CKDKFL+QS   +  TT +DI A MF+K  G  +EE KLRV  V    
Sbjct: 70  MQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLV---- 125

Query: 61  PPSPVPEGSEEGSSPRGSVSDNG 83
           PPS  PE S   +  +G+V ++ 
Sbjct: 126 PPSDSPELSPINTPKQGAVFEDS 148

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.05c PE=1 SV=1

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 1   MQAQKEAP-PDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEA---GHVVEECKLRVIYV 56
           +QA KE P PD +C+DKFL+QS+   D  T+   N   F  E    G  + + K+R +Y 
Sbjct: 66  LQAMKEEPAPDFKCRDKFLIQSMAIGDADTSNVENYHEFWTEMEKQGRSIFDRKIRCVY- 124

Query: 57  SPPQPPSPVPEGSEEGSSPRGSVSDNGHVNSA 88
           S  QPP    +  E  S+    VS  G  N A
Sbjct: 125 STKQPPQSADKQVENTSTSNPPVSVEGSENLA 156

Targets proteins containing a FFAT motif to endoplasmic reticulum membranes.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
356495613	241	PREDICTED: vesicle-associated protein 1-	1.0	0.709	0.766	3e-73
356540611	241	PREDICTED: vesicle-associated protein 1-	1.0	0.709	0.754	1e-70
388501352	239	unknown [Lotus japonicus]	0.988	0.707	0.725	1e-70
255576068	240	vesicle-associated membrane protein, put	0.994	0.708	0.823	2e-70
224074143	241	predicted protein [Populus trichocarpa]	1.0	0.709	0.801	3e-68
356563322	241	PREDICTED: vesicle-associated protein 1-	1.0	0.709	0.766	8e-66
357482017	243	Vesicle-associated membrane protein [Med	1.0	0.703	0.666	7e-65
357476871	242	Vesicle-associated membrane protein-asso	1.0	0.706	0.766	7e-65
357482019	171	Vesicle-associated membrane protein [Med	1.0	1.0	0.666	9e-65
356496332	241	PREDICTED: vesicle-associated protein 1-	1.0	0.709	0.654	1e-64

>gi|356495613|ref|XP_003516669.1| PREDICTED: vesicle-associated protein 1-2-like [Glycine max]

 Score =  279 bits (714), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 131/171 (76%), Positives = 152/171 (88%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
           MQAQK+AP DMQCKDKFLLQSVK +DGTTAKDI AEMFNKE GHVVEECKLRV+YVSP Q
Sbjct: 71  MQAQKDAPADMQCKDKFLLQSVKVDDGTTAKDITAEMFNKEVGHVVEECKLRVVYVSPTQ 130

Query: 61  PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDE 120
           PPSPVPEGSEEGSSPRGSVSDNG+ + A+ AA ARAF ER E  +KS EA+ALIS+L +E
Sbjct: 131 PPSPVPEGSEEGSSPRGSVSDNGNASGADSAAVARAFVERHEGPEKSAEAKALISRLAEE 190

Query: 121 KNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVMKKS 171
           KNNA+QQNNKLRQ+L+LLRRE  K+RGGVS + VIL+GL+GI++GY+MKK+
Sbjct: 191 KNNAIQQNNKLRQELDLLRRESNKSRGGVSMVIVILIGLLGIIMGYLMKKN 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540611|ref|XP_003538781.1| PREDICTED: vesicle-associated protein 1-2-like [Glycine max]

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 129/171 (75%), Positives = 149/171 (87%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
           MQAQK+AP DMQCKDKFLLQSVK +DGTTAKDI AEMFNKEAGHVVEECKLRV+YVSP Q
Sbjct: 71  MQAQKDAPADMQCKDKFLLQSVKVDDGTTAKDITAEMFNKEAGHVVEECKLRVVYVSPTQ 130

Query: 61  PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDE 120
           PPSPVPEGSEEGSSPRGSVSDNG+V+  + AA ARAF ER E  +KS E +ALIS+L +E
Sbjct: 131 PPSPVPEGSEEGSSPRGSVSDNGNVSGVDSAAVARAFVERHEGPEKSAEGKALISRLVEE 190

Query: 121 KNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVMKKS 171
           KNNA+QQNNKL Q+L+LLRRE  K+RGGVS   VIL+ L+GI++GY+MKK+
Sbjct: 191 KNNAIQQNNKLCQELDLLRRESNKSRGGVSMAIVILIVLLGIIMGYLMKKT 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501352|gb|AFK38742.1| unknown [Lotus japonicus]

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 124/171 (72%), Positives = 149/171 (87%), Gaps = 2/171 (1%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
           MQAQKEAPPDMQCKDKFLLQSVK  DG TAKDI AEMFNKEAGH+VEECKLRV+YV+PPQ
Sbjct: 71  MQAQKEAPPDMQCKDKFLLQSVKVEDGVTAKDITAEMFNKEAGHIVEECKLRVVYVAPPQ 130

Query: 61  PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDE 120
           PPSPV EGSEEGSSPRGSVS+NG+VN ++ A   R FTER    DKS EA+ALI++L +E
Sbjct: 131 PPSPVAEGSEEGSSPRGSVSENGNVNGSDSATGTRGFTER--ASDKSAEAKALIARLTEE 188

Query: 121 KNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVMKKS 171
           KNNA+QQNNKL Q+L++LRRE  ++RGG+S + VIL+GL+GI++GY+MKK+
Sbjct: 189 KNNAIQQNNKLSQELDMLRRESNESRGGISMLIVILIGLLGIIMGYIMKKA 239

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576068|ref|XP_002528929.1| vesicle-associated membrane protein, putative [Ricinus communis] gi|223531631|gb|EEF33458.1| vesicle-associated membrane protein, putative [Ricinus communis]

 Score =  270 bits (689), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 140/170 (82%), Positives = 158/170 (92%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
           MQAQKEAPPD+QCKDKFLLQSVKT+DG +AKDINAEMFNKEAGHVVEECKLRV+YVSPPQ
Sbjct: 71  MQAQKEAPPDLQCKDKFLLQSVKTHDGASAKDINAEMFNKEAGHVVEECKLRVLYVSPPQ 130

Query: 61  PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDE 120
           PPSPVPEGSEE SSPRGSVSDNG+V  +EF+ AA+AF ER E QDKS+EA++LISKL +E
Sbjct: 131 PPSPVPEGSEEESSPRGSVSDNGNVTGSEFSNAAKAFGERFETQDKSSEAKSLISKLNEE 190

Query: 121 KNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVMKK 170
           KNNA+QQNNKLRQ+LELL+REG KNR GVSFIFVI VGL+GI+LGY+MKK
Sbjct: 191 KNNAIQQNNKLRQELELLKREGNKNRAGVSFIFVIFVGLLGIILGYLMKK 240

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074143|ref|XP_002304271.1| predicted protein [Populus trichocarpa] gi|222841703|gb|EEE79250.1| predicted protein [Populus trichocarpa]

 Score =  262 bits (670), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 137/171 (80%), Positives = 152/171 (88%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
           MQAQKEAP DMQCKDKFLLQSVKTNDG TAKDINAEMF+KEAGH VEECKLRV+YVSPPQ
Sbjct: 71  MQAQKEAPTDMQCKDKFLLQSVKTNDGVTAKDINAEMFSKEAGHHVEECKLRVLYVSPPQ 130

Query: 61  PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDE 120
           PPSPV EGSEEGSSPRGSVSDNG+V   + + A RAF ER+E Q+KS EARALISKL DE
Sbjct: 131 PPSPVQEGSEEGSSPRGSVSDNGNVTGTDLSTATRAFVERLEPQEKSLEARALISKLTDE 190

Query: 121 KNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVMKKS 171
           KNNA+QQNNKLRQ+LELLR +G KNRGGVS +FVI VGL+GI LGY++KK+
Sbjct: 191 KNNAIQQNNKLRQELELLRHQGNKNRGGVSIMFVIFVGLLGIFLGYLVKKT 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563322|ref|XP_003549913.1| PREDICTED: vesicle-associated protein 1-2-like [Glycine max]

 Score =  254 bits (649), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 131/171 (76%), Positives = 154/171 (90%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
           MQAQKEAP DMQCKDKFLLQSVKT DGT+ KDI A+MFNKEAGHVVEECKLRV+YVSPPQ
Sbjct: 71  MQAQKEAPADMQCKDKFLLQSVKTVDGTSPKDITADMFNKEAGHVVEECKLRVLYVSPPQ 130

Query: 61  PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDE 120
           PPSPVPEGSEEGSSPRGSVS+NG+ N ++F  AAR FTER E QD+S EARALIS+L +E
Sbjct: 131 PPSPVPEGSEEGSSPRGSVSENGNANGSDFTQAARGFTERPESQDRSAEARALISRLTEE 190

Query: 121 KNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVMKKS 171
           KNNA+QQN+KL Q+LELL+REG K+RGGVSF+ V+L+GL+GI++GY+MK +
Sbjct: 191 KNNAIQQNSKLCQELELLKREGNKSRGGVSFVIVVLIGLLGIIMGYLMKTT 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482017|ref|XP_003611294.1| Vesicle-associated membrane protein [Medicago truncatula] gi|355512629|gb|AES94252.1| Vesicle-associated membrane protein [Medicago truncatula]

 Score =  251 bits (641), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 114/171 (66%), Positives = 143/171 (83%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
           MQAQKE PPDMQCKDKFLLQSV+ NDG  AK+I  EMFNKEAGHVVEECKLRV+YV+PPQ
Sbjct: 73  MQAQKEVPPDMQCKDKFLLQSVRVNDGADAKEITPEMFNKEAGHVVEECKLRVVYVAPPQ 132

Query: 61  PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDE 120
           P SPVPE SEEGSSPRGSV++NG+ N ++     R FTER    +KS EA+AL+ +L +E
Sbjct: 133 PQSPVPESSEEGSSPRGSVTENGNANGSDSTTVMRGFTERNGTPEKSAEAKALMLRLTEE 192

Query: 121 KNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVMKKS 171
           KNNA+Q N+KLRQ+L++LRR+  K+RG VS IFVIL+GL+G+++GY++KK+
Sbjct: 193 KNNAIQLNSKLRQELDMLRRQSNKSRGNVSMIFVILIGLLGLIMGYLLKKT 243

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476871|ref|XP_003608721.1| Vesicle-associated membrane protein-associated protein [Medicago truncatula] gi|355509776|gb|AES90918.1| Vesicle-associated membrane protein-associated protein [Medicago truncatula] gi|388505190|gb|AFK40661.1| unknown [Medicago truncatula]

 Score =  251 bits (641), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 131/171 (76%), Positives = 151/171 (88%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
           MQAQKEAP DMQCKDKFLLQSVKTNDG + KDI+AEMFNKEAGHVVEECKLRV+YVSPPQ
Sbjct: 72  MQAQKEAPADMQCKDKFLLQSVKTNDGVSPKDISAEMFNKEAGHVVEECKLRVVYVSPPQ 131

Query: 61  PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDE 120
           PPSPVPEGSEEGSSPRGS S+NG+ N  EFA   R   ER E QDKS EARALIS+L +E
Sbjct: 132 PPSPVPEGSEEGSSPRGSFSENGNANGPEFAQVTRGSAERPEAQDKSAEARALISRLTEE 191

Query: 121 KNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVMKKS 171
           KNNA+QQ ++LRQ+LELL+REG +NRGGVSFI VIL+GL+G+++GY+MKK+
Sbjct: 192 KNNAIQQTSRLRQELELLKREGNRNRGGVSFIIVILIGLLGLIMGYLMKKA 242

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482019|ref|XP_003611295.1| Vesicle-associated membrane protein [Medicago truncatula] gi|355512630|gb|AES94253.1| Vesicle-associated membrane protein [Medicago truncatula]

 Score =  251 bits (640), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 114/171 (66%), Positives = 143/171 (83%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
           MQAQKE PPDMQCKDKFLLQSV+ NDG  AK+I  EMFNKEAGHVVEECKLRV+YV+PPQ
Sbjct: 1   MQAQKEVPPDMQCKDKFLLQSVRVNDGADAKEITPEMFNKEAGHVVEECKLRVVYVAPPQ 60

Query: 61  PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDE 120
           P SPVPE SEEGSSPRGSV++NG+ N ++     R FTER    +KS EA+AL+ +L +E
Sbjct: 61  PQSPVPESSEEGSSPRGSVTENGNANGSDSTTVMRGFTERNGTPEKSAEAKALMLRLTEE 120

Query: 121 KNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVMKKS 171
           KNNA+Q N+KLRQ+L++LRR+  K+RG VS IFVIL+GL+G+++GY++KK+
Sbjct: 121 KNNAIQLNSKLRQELDMLRRQSNKSRGNVSMIFVILIGLLGLIMGYLLKKT 171

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496332|ref|XP_003517022.1| PREDICTED: vesicle-associated protein 1-2-like [Glycine max]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 112/171 (65%), Positives = 145/171 (84%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQ 60
           MQAQKEAPPDMQCKDKFLLQSV  + G T KDI  EMFNKE+GH VEECKLRV+YV+PPQ
Sbjct: 71  MQAQKEAPPDMQCKDKFLLQSVVASPGATTKDITPEMFNKESGHDVEECKLRVVYVAPPQ 130

Query: 61  PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDE 120
           PPSPV EGS+E SSPR SVS+NGH ++AEF  A++AF ER EHQD S EARA ISK+ +E
Sbjct: 131 PPSPVREGSDEDSSPRASVSENGHSSAAEFTGASKAFNERAEHQDASFEARAHISKVTEE 190

Query: 121 KNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVMKKS 171
           +N+ V+QN +L+Q+LELLRR+  ++ GGV F++V+LVG++G++LG+++K++
Sbjct: 191 RNSVVEQNRRLQQELELLRRDASRSHGGVPFMYVVLVGIIGLILGFLLKRT 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2055557	239	PVA12 "plant VAP homolog 12" [	0.988	0.707	0.430	6.9e-31
TAIR|locus:2101766	256	VAP27-1 "VAMP/SYNAPTOBREVIN-AS	0.988	0.660	0.424	1.6e-29
TAIR|locus:2126921	239	AT4G00170 [Arabidopsis thalian	0.321	0.230	0.727	7.6e-29
TAIR|locus:2171594	220	AT5G47180 [Arabidopsis thalian	0.321	0.25	0.509	1.4e-17
TAIR|locus:2061461	149	AT2G23830 [Arabidopsis thalian	0.321	0.369	0.636	3.8e-14
TAIR|locus:2025585	386	VAP27-2 "vamp/synaptobrevin-as	0.309	0.137	0.603	1.2e-13
TAIR|locus:2008231	637	AT1G51270 [Arabidopsis thalian	0.321	0.086	0.6	5.3e-12
POMBASE|SPBC16G5.05c	383	SPBC16G5.05c "VAP family prote	0.321	0.143	0.389	0.00029

TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 74/172 (43%), Positives = 98/172 (56%)

Query:     1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYXXXXX 60
             MQAQKEAP D+QCKDKFLLQ V  + G T KD+  EMF+KEAGH VEE KLRV+Y     
Sbjct:    70 MQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVVYVAPPR 129

Query:    61 XXXXXXXXXXXXXXXXXXXXDNGHVNSXXXXXXXXXXXXXIEHQDKSTEARALISKLKDE 120
                                 DNG  N+             ++ QD S+EARAL++KL +E
Sbjct:   130 PPSPVREGSEEGSSPRASVSDNG--NASDFTAAPRFSADRVDAQDNSSEARALVTKLTEE 187

Query:   121 KNNAVQQNNKLRQDLELLRREGKKNR-GGVSXXXXXXXXXXXXXXXYVMKKS 171
             KN+AVQ NN+L+Q+L+ LRRE K+++ GG+                Y+MK++
Sbjct:   188 KNSAVQLNNRLQQELDQLRRESKRSKSGGIPFMYVLLVGLIGLILGYIMKRT 239

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006605 "protein targeting" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 73/172 (42%), Positives = 96/172 (55%)

Query:     1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYXXXXX 60
             MQAQKEAP DMQCKDKFLLQ V  + G TAK++  EMF+KEAGH VEE KLRV Y     
Sbjct:    87 MQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYVAPPR 146

Query:    61 XXXXXXXXXXXXXXXXXXXXDNGHVNSXXXXXXXXXXXXXIEHQDKSTEARALISKLKDE 120
                                 DNGH +                HQ+ ++EARALI+KL +E
Sbjct:   147 PPSPVHEGSEEGSSPRASVSDNGHGSEFSFERFIVDNKAG--HQENTSEARALITKLTEE 204

Query:   121 KNNAVQQNNKLRQDLELLRREGKKNR-GGVSXXXXXXXXXXXXXXXYVMKKS 171
             K +A+Q NN+L+++L+ LRRE KK++ GG+                Y+MK++
Sbjct:   205 KQSAIQLNNRLQRELDQLRRESKKSQSGGIPFMYVLLVGLIGLILGYIMKRT 256

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0000326 "protein storage vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006886 "intracellular protein transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
 Identities = 40/55 (72%), Positives = 49/55 (89%)

Query:     1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIY 55
             MQAQKEAP DMQCKDKFL+Q+V  +DGTT+K++ AEMFNKEAG V+E+ KLRV+Y
Sbjct:    72 MQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVY 126

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
 Identities = 28/55 (50%), Positives = 37/55 (67%)

Query:     1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIY 55
             +QAQ+E PPDMQCKDKFLLQS      T   ++  + F K++G  + ECKL+V Y
Sbjct:    74 LQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSY 128

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2061461 AT2G23830 [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 35/55 (63%), Positives = 43/55 (78%)

Query:     1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIY 55
             MQAQKE P DMQ  +KF++QSV  + G TAK++  EMF+KE+GHVVEE KLRV Y
Sbjct:    71 MQAQKEVPSDMQSFEKFMIQSVLASPGVTAKEVTREMFSKESGHVVEETKLRVTY 125

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0042991 "transcription factor import into nucleus" evidence=RCA

TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 32/53 (60%), Positives = 37/53 (69%)

Query:     1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRV 53
             MQA KE PPDM CKDKFL+QS   +  TT +DI A MF+K  G  +EE KLRV
Sbjct:    70 MQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRV 122

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2008231 AT1G51270 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 5.3e-12, P = 5.3e-12
 Identities = 33/55 (60%), Positives = 40/55 (72%)

Query:     1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIY 55
             MQA KEAP DMQC+DK L Q       TTAKD+ +EMF+KEAGH  EE +L+V+Y
Sbjct:   241 MQALKEAPADMQCRDKLLFQCKVVEPETTAKDVTSEMFSKEAGHPAEETRLKVMY 295

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

POMBASE|SPBC16G5.05c SPBC16G5.05c "VAP family protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 97 (39.2 bits), Expect = 0.00029, P = 0.00029
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query:     1 MQAQKEAP-PDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEA---GHVVEECKLRVIY 55
             +QA KE P PD +C+DKFL+QS+   D  T+   N   F  E    G  + + K+R +Y
Sbjct:    66 LQAMKEEPAPDFKCRDKFLIQSMAIGDADTSNVENYHEFWTEMEKQGRSIFDRKIRCVY 124


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.127   0.343    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      171       118   0.00091  102 3  11 23  0.42    31
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  504 (54 KB)
  Total size of DFA:  107 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.52u 0.09s 12.61t   Elapsed:  00:00:00
  Total cpu time:  12.52u 0.09s 12.61t   Elapsed:  00:00:00
  Start:  Thu May  9 23:28:29 2013   End:  Thu May  9 23:28:29 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006020 "inositol metabolic process" evidence=ISS

GO:0008654 "phospholipid biosynthetic process" evidence=ISO

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SHC8	VAP12_ARATH	No assigned EC number	0.6337	0.9883	0.7071	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
COG5066	242	SCS2 VAMP-associated protein involved in inositol	99.41
KOG0439	218	consensus VAMP-associated protein involved in inos	98.79
PRK10884	206	SH3 domain-containing protein; Provisional	96.39
PF05957	94	DUF883: Bacterial protein of unknown function (DUF	94.79
PRK10132	108	hypothetical protein; Provisional	93.79
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	93.46
PRK10404	101	hypothetical protein; Provisional	92.02
PF00635	109	Motile_Sperm: MSP (Major sperm protein) domain; In	91.6
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	91.06
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	89.83
PF03302	397	VSP: Giardia variant-specific surface protein; Int	89.13
PRK15422	79	septal ring assembly protein ZapB; Provisional	88.97
PRK10884	206	SH3 domain-containing protein; Provisional	88.55
PRK13169	110	DNA replication intiation control protein YabA; Re	88.36
PF11120	62	DUF2636: Protein of unknown function (DUF2636); In	88.2
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	87.41
TIGR03493	62	cellullose_BcsF celllulose biosynthesis operon pro	87.15
COG4467	114	Regulator of replication initiation timing [Replic	85.34
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	84.64
PF04420	161	CHD5: CHD5-like protein; InterPro: IPR007514 Membe	84.13
PRK15422	79	septal ring assembly protein ZapB; Provisional	83.72
PRK13169	110	DNA replication intiation control protein YabA; Re	82.63
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	82.15
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	81.61
PF15188	85	CCDC-167: Coiled-coil domain-containing protein 16	80.86
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	80.33
PRK00888	105	ftsB cell division protein FtsB; Reviewed	80.32
PF13807	82	GNVR: G-rich domain on putative tyrosine kinase	80.32
COG4575	104	ElaB Uncharacterized conserved protein [Function u	80.04

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

Probab=99.41  E-value=1.1e-13  Score=113.41  Aligned_cols=56  Identities=30%  Similarity=0.585  Sum_probs=52.1

Q ss_pred             CCCCCCCC-CCCCCCceeEEEEEeeCCCCCccccchhhhccccCceeeEEEeEEEEeC
Q 030828            1 MQAQKEAP-PDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS   57 (171)
Q Consensus         1 ~Qa~~e~P-pd~kckDKFLVQSv~v~~~~~~~~i~~~~f~k~~~~~i~e~KLrVv~~~   57 (171)
                      ||+|+|.| ||+||||||||||+..+......|+ .|+|...++.-|.++||||+|--
T Consensus        66 lq~l~eEpapdfKCrdKFLiqs~~~~~~l~g~d~-ad~wt~~sk~~i~~rkIrcvyse  122 (242)
T COG5066          66 LQGLTEEPAPDFKCRDKFLIQSYRFDWRLSGSDF-ADHWTSSSKKPIWTRKIRCVYSE  122 (242)
T ss_pred             eeccccCCCCCccccceeEEEEeccChhhccchH-HHHHHhhccccchhhheeEEeec
Confidence            69999998 9999999999999999998888899 49999999999999999999983

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=8.9e-09  Score=83.95  Aligned_cols=64  Identities=33%  Similarity=0.578  Sum_probs=52.4

Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeeCCCCCccccchhhhcccc--CceeeEEEeEEEEeCCCCCCCCCC
Q 030828            1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEA--GHVVEECKLRVIYVSPPQPPSPVP   66 (171)
Q Consensus         1 ~Qa~~e~Ppd~kckDKFLVQSv~v~~~~~~~~i~~~~f~k~~--~~~i~e~KLrVv~~~p~~~~s~~~   66 (171)
                      |||.+..|+|++|||||+||++.++.+ +..++ .+.|.-..  +..+.+.|++|+|+.|..+++...
T Consensus        74 ~q~~~~~P~d~~~r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~  139 (218)
T KOG0439|consen   74 HQPFEKSPPDFKSRHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTETDSVVA  139 (218)
T ss_pred             eccCccCchhhcccceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCCccccc
Confidence            588788899999999999999999987 33344 57776555  899999999999999877765543

>PRK10884 SH3 domain-containing protein; Provisional

Probab=96.39  E-value=0.0095  Score=49.14  Aligned_cols=67  Identities=19%  Similarity=0.304  Sum_probs=40.3

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--ch-HHHHHHHHHHHHHHHHHh
Q 030828          102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNRGG--VS-FIFVILVGLVGIVLGYVM  168 (171)
Q Consensus       102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~~~~~~~G--~~-~~~V~~v~ll~~llgy~~  168 (171)
                      +++.+++++...|..|++|.+.+.+|...++.|++.++.........  +- +++=.+|+++|+|||.++
T Consensus       122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlil  191 (206)
T PRK10884        122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLL  191 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence            45666666777777777777777777777777666555432211111  12 222366777777788664

>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD

Probab=94.79  E-value=0.35  Score=34.53  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.4

Q ss_pred             chHHHHHHHHHHHHHHHHHhcCC
Q 030828          149 VSFIFVILVGLVGIVLGYVMKKS  171 (171)
Q Consensus       149 ~~~~~V~~v~ll~~llgy~~~~~  171 (171)
                      =|+.-|.+.+.+|||||+++.|+
T Consensus        72 ~P~~svgiAagvG~llG~Ll~RR   94 (94)
T PF05957_consen   72 NPWQSVGIAAGVGFLLGLLLRRR   94 (94)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCC
Confidence            48888999999999999999875

>PRK10132 hypothetical protein; Provisional

Probab=93.79  E-value=0.7  Score=34.46  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=20.6

Q ss_pred             CchHHHHHHHHHHHHHHHHHhcCC
Q 030828          148 GVSFIFVILVGLVGIVLGYVMKKS  171 (171)
Q Consensus       148 G~~~~~V~~v~ll~~llgy~~~~~  171 (171)
                      .=|..-|.+.+-+|||||+++.|+
T Consensus        84 ~~Pw~svgiaagvG~llG~Ll~RR  107 (108)
T PRK10132         84 ERPWCSVGTAAAVGIFIGALLSLR  107 (108)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHhcc
Confidence            458888889999999999999875

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=93.46  E-value=0.4  Score=33.25  Aligned_cols=37  Identities=24%  Similarity=0.308  Sum_probs=26.9

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828          100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE  136 (171)
Q Consensus       100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~  136 (171)
                      .+.|+.|...|..+|..|+.|...+..+|..|.++-.
T Consensus         6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~   42 (72)
T PF06005_consen    6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENE   42 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            4578888888888888888888887777555544433

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK10404 hypothetical protein; Provisional

Probab=92.02  E-value=1.6  Score=32.13  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=19.7

Q ss_pred             chHHHHHHHHHHHHHHHHHhcCC
Q 030828          149 VSFIFVILVGLVGIVLGYVMKKS  171 (171)
Q Consensus       149 ~~~~~V~~v~ll~~llgy~~~~~  171 (171)
                      =|..-|.+.+.+|||||+++.|+
T Consensus        79 ~Pw~avGiaagvGlllG~Ll~RR  101 (101)
T PRK10404         79 KPWQGIGVGAAVGLVLGLLLARR  101 (101)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhcC
Confidence            57778888888999999999875

>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm

Probab=91.60  E-value=0.15  Score=36.43  Aligned_cols=28  Identities=32%  Similarity=0.470  Sum_probs=17.8

Q ss_pred             CceeEEEEEeeCCCCCcc-ccchhhhccc
Q 030828           14 KDKFLLQSVKTNDGTTAK-DINAEMFNKE   41 (171)
Q Consensus        14 kDKFLVQSv~v~~~~~~~-~i~~~~f~k~   41 (171)
                      +|||+||++.++++.... .....+|...
T Consensus        79 ~dkf~I~~~~~~~~~~~~~~~~~~~~~~~  107 (109)
T PF00635_consen   79 KDKFLIQSIVVPDNATDPKKDFKQIWKNG  107 (109)
T ss_dssp             SEEEEEEEEEE-TT-SSSHHHHHCCHHHS
T ss_pred             CCEEEEEEEEcCCCccchhhhHHHHHhcc
Confidence            999999999998775433 2223555543

These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=91.06  E-value=0.83  Score=34.00  Aligned_cols=38  Identities=21%  Similarity=0.321  Sum_probs=19.2

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828          102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLR  139 (171)
Q Consensus       102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr  139 (171)
                      .++.++.+..++|..|+.+...++.||..|+-|...||
T Consensus        12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr   49 (107)
T PF06156_consen   12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLR   49 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555544444444

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.83  E-value=1.3  Score=30.90  Aligned_cols=37  Identities=24%  Similarity=0.245  Sum_probs=27.0

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828          100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE  136 (171)
Q Consensus       100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~  136 (171)
                      .+.|++|...|..+|.-|+-|...+...|+.|++|..
T Consensus         6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q   42 (79)
T COG3074           6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ   42 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence            3467788888888888887777777777777765544

>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein)

Probab=89.13  E-value=0.2  Score=44.90  Aligned_cols=24  Identities=33%  Similarity=0.667  Sum_probs=20.4

Q ss_pred             CCchHHHHHHHH-HHHHHHHHHhcC
Q 030828          147 GGVSFIFVILVG-LVGIVLGYVMKK  170 (171)
Q Consensus       147 ~G~~~~~V~~v~-ll~~llgy~~~~  170 (171)
                      .|++|..|++|+ |+|||.+||+.|
T Consensus       370 aGIsvavvvvVgglvGfLcWwf~cr  394 (397)
T PF03302_consen  370 AGISVAVVVVVGGLVGFLCWWFICR  394 (397)
T ss_pred             eeeeehhHHHHHHHHHHHhhheeec
Confidence            799988776665 999999999987

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=88.97  E-value=1.6  Score=30.89  Aligned_cols=37  Identities=24%  Similarity=0.245  Sum_probs=27.5

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828          100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE  136 (171)
Q Consensus       100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~  136 (171)
                      .+.|++|...|..+|.-|+-|+..+..+|..|.+|..
T Consensus         6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~   42 (79)
T PRK15422          6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ   42 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467888888888888888777777777777766544

>PRK10884 SH3 domain-containing protein; Provisional

Probab=88.55  E-value=1.5  Score=36.11  Aligned_cols=64  Identities=17%  Similarity=0.128  Sum_probs=32.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCCchHHHHHHHHHHHHHHHHHh
Q 030828          102 EHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKN---RGGVSFIFVILVGLVGIVLGYVM  168 (171)
Q Consensus       102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~~~~~---~~G~~~~~V~~v~ll~~llgy~~  168 (171)
                      ..+....+.+++-.+|++|+..+..++..|+.+++.+++.....   .||.   .+++=.|||+||-|+.
T Consensus       129 ~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~---v~~~GlllGlilp~l~  195 (206)
T PRK10884        129 QSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGG---VAGIGLLLGLLLPHLI  195 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchH---HHHHHHHHHHHhcccc
Confidence            34444444555555555555555555555555555444432111   1332   2222334888888876

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=88.36  E-value=1.8  Score=32.41  Aligned_cols=38  Identities=24%  Similarity=0.242  Sum_probs=22.3

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828          101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELL  138 (171)
Q Consensus       101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~l  138 (171)
                      ..+-.++.+.++.+..|-||...+.-||..|++.|..+
T Consensus        18 ~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169         18 GVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455555556666666666666666666666555544

>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []

Probab=88.20  E-value=0.38  Score=32.56  Aligned_cols=20  Identities=30%  Similarity=0.629  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcC
Q 030828          151 FIFVILVGLVGIVLGYVMKK  170 (171)
Q Consensus       151 ~~~V~~v~ll~~llgy~~~~  170 (171)
                      +++|++.++++|.+||++++
T Consensus         7 iQii~l~AlI~~pLGyl~~~   26 (62)
T PF11120_consen    7 IQIIILCALIFFPLGYLARR   26 (62)
T ss_pred             HHHHHHHHHHHHhHHHHHHH
Confidence            57889999999999999875

Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=87.41  E-value=5  Score=27.76  Aligned_cols=44  Identities=20%  Similarity=0.245  Sum_probs=32.6

Q ss_pred             HHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828           94 ARAFTERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL  137 (171)
Q Consensus        94 ~~~~~~~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~  137 (171)
                      ...+.++..|+-+..+.+..-..|.+++..+.++|++|++|...
T Consensus        14 ~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~   57 (72)
T PF06005_consen   14 QQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNA   57 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            33444566778888888888888888888888888888877553

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT

Probab=87.15  E-value=0.67  Score=31.32  Aligned_cols=21  Identities=33%  Similarity=0.651  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCC
Q 030828          151 FIFVILVGLVGIVLGYVMKKS  171 (171)
Q Consensus       151 ~~~V~~v~ll~~llgy~~~~~  171 (171)
                      ++.|++-+|+.|-+||+++++
T Consensus         7 lQli~lcALIf~pLgyl~~r~   27 (62)
T TIGR03493         7 LQLVLLCALIFFPLGYLARRS   27 (62)
T ss_pred             HHHHHHHHHHHHhHHHHHHhh
Confidence            578888888999999998874

Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=85.34  E-value=3.3  Score=31.06  Aligned_cols=42  Identities=24%  Similarity=0.219  Sum_probs=29.9

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828          100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE  141 (171)
Q Consensus       100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~  141 (171)
                      ++.++.++-+.-++|..|+..+.+++.||..|+=|.+.||++
T Consensus        10 v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~R   51 (114)
T COG4467          10 VDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRER   51 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHH
Confidence            345677777777777777777777777777777776666654

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=84.64  E-value=5.5  Score=29.57  Aligned_cols=41  Identities=22%  Similarity=0.264  Sum_probs=36.8

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828          100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR  140 (171)
Q Consensus       100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~  140 (171)
                      +..+-+++.+.+..+..|-||...+..||..|++.|..+.+
T Consensus        17 l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen   17 LGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55788899999999999999999999999999988887654

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein

Probab=84.13  E-value=1.8  Score=34.13  Aligned_cols=43  Identities=26%  Similarity=0.305  Sum_probs=29.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhccCC
Q 030828          103 HQDKSTEARALISKLKDEKNN------------AVQQNNKLRQDLELLRREGKKN  145 (171)
Q Consensus       103 l~~kl~ea~a~I~kL~eE~~~------------~~~q~~~Lq~El~~lr~~~~~~  145 (171)
                      ...+..+.+.+|.+|++|+++            +.|+-.++.+|++.+.+.....
T Consensus        38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~   92 (161)
T PF04420_consen   38 SSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSE   92 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777888888887763            5666667778888776654333

The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=83.72  E-value=4.2  Score=28.80  Aligned_cols=37  Identities=14%  Similarity=0.264  Sum_probs=28.4

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828          100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLE  136 (171)
Q Consensus       100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~  136 (171)
                      ++++|++-..+...+..++..+..+.++|++|++|..
T Consensus        27 ieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~   63 (79)
T PRK15422         27 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN   63 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            5677777777777777777777778889999887755

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=82.63  E-value=7.3  Score=29.15  Aligned_cols=43  Identities=16%  Similarity=0.139  Sum_probs=39.2

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030828          100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREG  142 (171)
Q Consensus       100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~~  142 (171)
                      +..++.++....+++..|+.+...++.||..|+-|-+.||++.
T Consensus        10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l   52 (110)
T PRK13169         10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERL   52 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999888773

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=82.15  E-value=7.3  Score=24.52  Aligned_cols=34  Identities=26%  Similarity=0.379  Sum_probs=20.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828          107 STEARALISKLKDEKNNAVQQNNKLRQDLELLRR  140 (171)
Q Consensus       107 l~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~  140 (171)
                      ++-.++..-.|+.+-+++.+||+.|+.|+..|+.
T Consensus         7 y~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~   40 (45)
T PF02183_consen    7 YDALKASYDSLKAEYDSLKKENEKLRAEVQELKE   40 (45)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555666666666667777766666554

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.61  E-value=3.8  Score=28.54  Aligned_cols=36  Identities=11%  Similarity=0.250  Sum_probs=27.3

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828          100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDL  135 (171)
Q Consensus       100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El  135 (171)
                      +++||+|-.....+.+.++..+..+.++|++|++|-
T Consensus        27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~   62 (79)
T COG3074          27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQ   62 (79)
T ss_pred             HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667788777777777777777777888888887663

>PF15188 CCDC-167: Coiled-coil domain-containing protein 167

Probab=80.86  E-value=5.4  Score=28.61  Aligned_cols=42  Identities=21%  Similarity=0.362  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHH
Q 030828          119 DEKNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLG  165 (171)
Q Consensus       119 eE~~~~~~q~~~Lq~El~~lr~~~~~~~~G~~~~~V~~v~ll~~llg  165 (171)
                      +|.+.....-....++|..||+.. +.    ++++.++++++.||+.
T Consensus        43 ~E~~~l~~~l~~~E~eL~~LrkEN-rK----~~~ls~~l~~v~~LvY   84 (85)
T PF15188_consen   43 KELNELKEKLENNEKELKLLRKEN-RK----SMLLSVALFFVCFLVY   84 (85)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhh-hh----hHHHHHHHHHHHHHHc
Confidence            444444444444456777888763 22    3455555566666553

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=80.33  E-value=5.7  Score=26.63  Aligned_cols=30  Identities=20%  Similarity=0.298  Sum_probs=16.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828          102 EHQDKSTEARALISKLKDEKNNAVQQNNKL  131 (171)
Q Consensus       102 ~l~~kl~ea~a~I~kL~eE~~~~~~q~~~L  131 (171)
                      .++.++.+...+|.+|+++...+.++.+.|
T Consensus        21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l   50 (80)
T PF04977_consen   21 QLNQEIAELQKEIEELKKENEELKEEIERL   50 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445555555555555555555555555555

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=80.32  E-value=5.3  Score=29.41  Aligned_cols=34  Identities=15%  Similarity=0.194  Sum_probs=22.9

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828          100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQ  133 (171)
Q Consensus       100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~  133 (171)
                      +..++.+++++++++.+|+++...+.++.+.|+.
T Consensus        29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~   62 (105)
T PRK00888         29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG   62 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            4456667777777777777766666666666664

>PF13807 GNVR: G-rich domain on putative tyrosine kinase

Probab=80.32  E-value=14  Score=25.38  Aligned_cols=16  Identities=25%  Similarity=0.521  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHH
Q 030828          151 FIFVILVGLVGIVLGY  166 (171)
Q Consensus       151 ~~~V~~v~ll~~llgy  166 (171)
                      .+++++.+++|+++|.
T Consensus        59 ~lil~l~~~~Gl~lgi   74 (82)
T PF13807_consen   59 ALILALGLFLGLILGI   74 (82)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4677777788888773

>COG4575 ElaB Uncharacterized conserved protein [Function unknown]

Probab=80.04  E-value=10  Score=28.22  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=19.2

Q ss_pred             chHHHHHHHHHHHHHHHHHhcCC
Q 030828          149 VSFIFVILVGLVGIVLGYVMKKS  171 (171)
Q Consensus       149 ~~~~~V~~v~ll~~llgy~~~~~  171 (171)
                      =|-+-|.+-+-+|||||.++.|+
T Consensus        82 ~PWq~VGvaAaVGlllGlLlsRR  104 (104)
T COG4575          82 NPWQGVGVAAAVGLLLGLLLSRR  104 (104)
T ss_pred             CCchHHHHHHHHHHHHHHHHhcC
Confidence            46777888899999999998774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	171
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	1e-15
2cri_A	147	Vesicle-associated membrane protein-associated pro	2e-11
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	1e-07
1z9l_A	128	Vesicle-associated membrane protein-associated pro	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152

 Score = 69.0 bits (168), Expect = 1e-15
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEA-GHVVEECKLRVIYVSPP 59
           +         +  +D+FL+ + +    +         F KE   + V E +LR   V   
Sbjct: 80  IIVSPHGGLTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESS 139

Query: 60  QPPSPVPEGSEEG 72
           +P S +  G   G
Sbjct: 140 KPNSLMLSGPSSG 152

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147

 Score = 58.2 bits (140), Expect = 2e-11
 Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 8   PPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPE 67
            P+ + K KF++Q++      +  +    ++ +     + + KLR ++  P +       
Sbjct: 86  DPNEKSKHKFMVQTIFAPPNISDME---AVWKEAKPDELMDSKLRCVFEMPNENDKLNDS 142

Query: 68  GSEEG 72
           G   G
Sbjct: 143 GPSSG 147

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 4/55 (7%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIY 55
                 A  D+   D+  ++   T DG   K    E F  +   +V    L + Y
Sbjct: 74  CDTFNAATEDL-NNDRITIEWTNTPDGAA-KQFRREWFQGDG--MVRRKNLPIEY 124

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 8/48 (16%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 8   PPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIY 55
            P+ + K KF++Q++      +  +    ++ +     + + KLR ++
Sbjct: 82  DPNEKSKHKFMVQTIFAPPNISDME---AVWKEAKPDELMDSKLRCVF 126

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 4e-04
 Identities = 34/182 (18%), Positives = 56/182 (30%), Gaps = 52/182 (28%)

Query: 10  DMQCKD---KFLLQSVKTNDGTTAKDINAEMF-NKEAGHVV-----EECKLRVIYVSPPQ 60
             Q KD    F    V   D    +D+   +   +E  H++         LR+ +    +
Sbjct: 15  QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 61  PPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDE 120
               V +  EE               + +F  +      + E +  S   R  I + +D 
Sbjct: 75  QEEMVQKFVEEVLRI-----------NYKFLMSPI----KTEQRQPSMMTRMYIEQ-RDR 118

Query: 121 KNNAVQ-----------QNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVMK 169
             N  Q              KLRQ L  LR              V++ G++G   G    
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK----------NVLIDGVLGS--G---- 162

Query: 170 KS 171
           K+
Sbjct: 163 KT 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	99.53
2cri_A	147	Vesicle-associated membrane protein-associated pro	99.35
1z9l_A	128	Vesicle-associated membrane protein-associated pro	99.21
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	98.6
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	97.5
1row_A	109	SSP-19, MSP-domain protein like family member; bet	97.1
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	92.13
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	88.94
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	86.82
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	84.42
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	82.22
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	81.51

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2

Probab=99.53  E-value=4.8e-15  Score=115.02  Aligned_cols=66  Identities=20%  Similarity=0.374  Sum_probs=56.7

Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeeC--CCCCccccchhhhccccCceeeEEEeEEEEeCCCCCCCCCCCCCCC
Q 030828            1 MQAQKEAPPDMQCKDKFLLQSVKTN--DGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPEGSEE   71 (171)
Q Consensus         1 ~Qa~~e~Ppd~kckDKFLVQSv~v~--~~~~~~~i~~~~f~k~~~~~i~e~KLrVv~~~p~~~~s~~~e~~e~   71 (171)
                      ||++++    .+|||||||||+.++  ++.+..|+. ++|.+..+..|+++||||+|+.|++|++++.+|.++
T Consensus        84 lq~~~~----~~~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g~~~  151 (152)
T 1wic_A           84 PHGGLT----VSAQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSS  151 (152)
T ss_dssp             ECSSSC----CCSSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSC
T ss_pred             ecCccc----CCCCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCCCCCccccCCCC
Confidence            567654    389999999999999  666677885 999999999999999999999999999999888554

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.35  E-value=1.1e-12  Score=100.86  Aligned_cols=57  Identities=19%  Similarity=0.404  Sum_probs=47.8

Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeeCCCCCccccchhhhccccCceeeEEEeEEEEeCCCCC
Q 030828            1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQP   61 (171)
Q Consensus         1 ~Qa~~e~Ppd~kckDKFLVQSv~v~~~~~~~~i~~~~f~k~~~~~i~e~KLrVv~~~p~~~   61 (171)
                      |||++. +|+++|||||||||+.++++.  .++ .++|.+..+..++++||||+|+.|++.
T Consensus        80 l~~~~~-~p~~~~kDKFlVqs~~~~~~~--~d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~  136 (147)
T 2cri_A           80 LQPFDY-DPNEKSKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFEMPNEN  136 (147)
T ss_dssp             ECCCCC-CTTCCSCCCEEEEEEECCTTC--CCH-HHHHHHSCTTTCEEEEEEEEEECSCCS
T ss_pred             ECCCcC-CccccCCCEEEEEEEEcCCCc--ccH-HHHhhcCCCCceEEEEEEEEEecCCCC
Confidence            577754 457899999999999999864  356 699999989999999999999988654

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A

Probab=99.21  E-value=1.6e-11  Score=91.97  Aligned_cols=52  Identities=19%  Similarity=0.406  Sum_probs=44.2

Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeeCCCCCccccchhhhccccCceeeEEEeEEEEe
Q 030828            1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV   56 (171)
Q Consensus         1 ~Qa~~e~Ppd~kckDKFLVQSv~v~~~~~~~~i~~~~f~k~~~~~i~e~KLrVv~~   56 (171)
                      |||++.. |+++|||||+|||+.+++|.  .|+ .++|.+.++..++|+||||+|.
T Consensus        76 ~~~~~~~-p~~~~~dkF~V~s~~~~~~~--~~~-~~~w~~~~~~~i~e~kLrv~f~  127 (128)
T 1z9l_A           76 LQPFDYD-PNEKSKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFE  127 (128)
T ss_dssp             ECCCCCC-TTCCCCCEEEEEEEECCTTC--SCH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred             ECcCcCC-cccccCCEEEEEEEECCCCc--chH-HHHhhcCCCCceEEEEEEEEEe
Confidence            5777554 57899999999999999864  356 6999999999999999999995

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A

Probab=98.60  E-value=4.3e-08  Score=73.43  Aligned_cols=52  Identities=23%  Similarity=0.365  Sum_probs=41.0

Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeeCCCCCccccchhhhccccCceeeEEEeEEEEe
Q 030828            1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV   56 (171)
Q Consensus         1 ~Qa~~e~Ppd~kckDKFLVQSv~v~~~~~~~~i~~~~f~k~~~~~i~e~KLrVv~~   56 (171)
                      |||+++.|++. +||||||||+.+++|.+ +++..++| ..+ ..+..++|+|-|-
T Consensus        74 ~q~~~~~~~~~-~kDKf~Vq~~~~p~~~~-~~~~~~wf-~~d-~~~~~k~L~V~Yn  125 (126)
T 1msp_A           74 CDTFNAATEDL-NNDRITIEWTNTPDGAA-KQFRREWF-QGD-GMVRRKNLPIEYN  125 (126)
T ss_dssp             ECCCCGGGSCC-SSCEEEEEEEECCTTCC-SSCCTHHH-HSS-SCCEEEEEEEEEE
T ss_pred             ecCCCCCCCcc-CCCEEEEEEEECCCCcc-hhhhHHhh-cCC-CceEEEEEEEEec
Confidence            68999888776 49999999999998864 67874444 333 4689999999984

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=97.50  E-value=0.00011  Score=54.51  Aligned_cols=38  Identities=21%  Similarity=0.240  Sum_probs=29.0

Q ss_pred             CCCceeEEEEEeeCCCCCccccchhhhccccCceeeEEEeEEE
Q 030828           12 QCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVI   54 (171)
Q Consensus        12 kckDKFLVQSv~v~~~~~~~~i~~~~f~k~~~~~i~e~KLrVv   54 (171)
                      .|+||||||++.++++.  .|. .++|.+..+  ..+.+|+++
T Consensus        77 ~k~DKflVq~~~~~~d~--~d~-~~~fk~~~~--~g~~~i~l~  114 (116)
T 1m1s_A           77 PKEDKIVIQYAEVPAEE--TDP-MAPFKAGAQ--QGEIIVKLI  114 (116)
T ss_dssp             SCEEEEEEEEEEECTTC--CCT-THHHHTTCC--CEEEEEEEE
T ss_pred             CCCCEEEEEEEECCCCC--CCH-HHHHhcCCC--CceEEEEEE
Confidence            58999999999999753  344 599988755  566777764

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=97.10  E-value=0.00053  Score=50.00  Aligned_cols=37  Identities=14%  Similarity=0.148  Sum_probs=27.1

Q ss_pred             CCCceeEEEEEeeCCCCCccccchhhhccccCceeeEEEeEE
Q 030828           12 QCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRV   53 (171)
Q Consensus        12 kckDKFLVQSv~v~~~~~~~~i~~~~f~k~~~~~i~e~KLrV   53 (171)
                      .||||||||++.++++.  .|. .++|.+.....  +.+|++
T Consensus        69 ~~~dKflvq~~~~~~~~--~d~-~~~fk~~~~~g--~~~i~l  105 (109)
T 1row_A           69 PKEDKLVVHFASAPADA--TDA-QAAFVAVAPAG--TVTIPM  105 (109)
T ss_dssp             CEEEEEEEEEEECCTTC--SCH-HHHHTTCCCCE--EEEEEE
T ss_pred             CCCCEEEEEEEECCCCC--CCH-HHHhhcCCCCc--eEEEEE
Confidence            59999999999998763  345 69998865533  445554

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=92.13  E-value=0.42  Score=33.00  Aligned_cols=38  Identities=24%  Similarity=0.212  Sum_probs=28.7

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828          100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL  137 (171)
Q Consensus       100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~  137 (171)
                      .+.|++|...|..+|.-|+.|...+.++|..|.++...
T Consensus         8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e   45 (81)
T 2jee_A            8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN   45 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788888899998888888888887777776554443

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=88.94  E-value=1  Score=30.58  Aligned_cols=36  Identities=33%  Similarity=0.471  Sum_probs=30.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828          106 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE  141 (171)
Q Consensus       106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~  141 (171)
                      -|..|..+|..|+++...+..+...|+.+...|+++
T Consensus        41 iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~   76 (80)
T 1nlw_A           41 LLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ   76 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            378899999999999988999999998887777665

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=86.82  E-value=1.7  Score=29.35  Aligned_cols=35  Identities=17%  Similarity=0.299  Sum_probs=28.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828          107 STEARALISKLKDEKNNAVQQNNKLRQDLELLRRE  141 (171)
Q Consensus       107 l~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~  141 (171)
                      |..|..+|..|+++...+..+...|+++...|+++
T Consensus        42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~   76 (83)
T 1nkp_B           42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQ   76 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888899999988888888888888877777665

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=84.42  E-value=2.9  Score=25.25  Aligned_cols=34  Identities=18%  Similarity=0.220  Sum_probs=23.8

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828          101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQD  134 (171)
Q Consensus       101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~E  134 (171)
                      ++|+++-.+.....+.|.+..+.+.+||.-|+|-
T Consensus         6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqv   39 (42)
T 2oqq_A            6 SELENRVKDLENKNSELEERLSTLQNENQMLRHI   39 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3566677777777777777777777777777654

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=82.22  E-value=4.3  Score=27.90  Aligned_cols=38  Identities=13%  Similarity=0.219  Sum_probs=28.5

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828          100 RIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL  137 (171)
Q Consensus       100 ~~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~  137 (171)
                      +++|+.+-..+.++...++..+..+.++|++|++|...
T Consensus        29 ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~   66 (81)
T 2jee_A           29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG   66 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            55677777777777777777777788888888887653

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=81.51  E-value=1.8  Score=28.89  Aligned_cols=37  Identities=16%  Similarity=0.204  Sum_probs=18.4

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828          101 IEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLEL  137 (171)
Q Consensus       101 ~~l~~kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~  137 (171)
                      .+|+.++.+.......|..|...+..++..|+.|+..
T Consensus        32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~   68 (70)
T 1gd2_E           32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI   68 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555444455555555545443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	171
d1wica_	152	b.1.11.2 (A:) MSP domain containing protein 2, Mos	3e-19
d1grwa_	124	b.1.11.2 (A:) Major sperm protein, MSP {Nematode (	7e-11

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.3 bits (190), Expect = 3e-19
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 4   QKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEA-GHVVEECKLRVIYVSPPQPP 62
                  +  +D+FL+ + +    +         F KE   + V E +LR   V   +P 
Sbjct: 83  SPHGGLTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPN 142

Query: 63  SPVPEGSEEG 72
           S +  G   G
Sbjct: 143 SLMLSGPSSG 152

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.5 bits (131), Expect = 7e-11
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 4/55 (7%)

Query: 1   MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIY 55
             A      +    D+  ++   T DG  AK    E F  +   +V    L + Y
Sbjct: 72  CDAFAF-GQEDTNNDRITVEWTNTPDG-AAKQFRREWFQGDG--MVRRKNLPIEY 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d1wica_	152	MSP domain containing protein 2, Mospd2 {Mouse (Mu	99.08
d1grwa_	124	Major sperm protein, MSP {Nematode (Caenorhabditis	98.66
d1rowa_	107	SSP-19 {Nematode (Caenorhabditis elegans) [TaxId:	94.76
d1m1sa_	109	WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623	93.11
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	84.71
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	84.13
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	82.9
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	82.21

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=4.7e-11  Score=90.65  Aligned_cols=62  Identities=18%  Similarity=0.363  Sum_probs=50.0

Q ss_pred             CCCCCCCceeEEEEEeeCCCCCc--cccchhhhccccCceeeEEEeEEEEeCCCCCCCCCCCCCC
Q 030828            8 PPDMQCKDKFLLQSVKTNDGTTA--KDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPEGSE   70 (171)
Q Consensus         8 Ppd~kckDKFLVQSv~v~~~~~~--~~i~~~~f~k~~~~~i~e~KLrVv~~~p~~~~s~~~e~~e   70 (171)
                      +++++||||||||++.++++.+.  .|+ .++|....+..|+++||||+|+.++.|++++-.+.+
T Consensus        87 ~~~~~~kdKFli~~~~v~~~~~~~~~d~-~~~wk~~~~~~i~~~kLkv~~~~~~~p~s~~~~~~~  150 (152)
T d1wica_          87 GLTVSAQDRFLIMAAEMEQSSGTGPAEL-SQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPS  150 (152)
T ss_dssp             SSCCCSSCCEEEEEEECCSSCCCSHHHH-HHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCS
T ss_pred             CCcccCCCcEEEEEEEeCCCCCCCccCH-HHHhhcCCcCcEEEEEEEEEEeCCCCCCCccccCCC
Confidence            45789999999999999876433  345 488988888899999999999999888877755533

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.66  E-value=1.6e-08  Score=73.93  Aligned_cols=53  Identities=19%  Similarity=0.209  Sum_probs=40.4

Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeeCCCCCccccchhhhccccCceeeEEEeEEEEeC
Q 030828            1 MQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS   57 (171)
Q Consensus         1 ~Qa~~e~Ppd~kckDKFLVQSv~v~~~~~~~~i~~~~f~k~~~~~i~e~KLrVv~~~   57 (171)
                      ||++.. .++.+||||||||++.++++. .+++. +.|...+ ..+.++||+|.|.+
T Consensus        72 ~~~~~~-~~~~~~~dkF~v~~~~~p~~~-~~~~~-~~w~~~~-~~~~~~~l~V~Y~p  124 (124)
T d1grwa_          72 CDAFAF-GQEDTNNDRITVEWTNTPDGA-AKQFR-REWFQGD-GMVRRKNLPIEYNP  124 (124)
T ss_dssp             ECCCCG-GGSCCTTCEEEEEEEECCSSC-CSSCC-GGGGTSS-SCCEEEEEEEEEEC
T ss_pred             EecCCC-CCcccCCceEEEEEEECCCcc-HHHHH-HHHhccC-CceEEEEEEEEeCC
Confidence            466644 457789999999999999764 45674 6666554 47889999999984

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.76  E-value=0.017  Score=40.04  Aligned_cols=39  Identities=13%  Similarity=0.098  Sum_probs=26.7

Q ss_pred             CCCCCceeEEEEEeeCCCCCccccchhhhccccCceeeEEEe
Q 030828           10 DMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKL   51 (171)
Q Consensus        10 d~kckDKFLVQSv~v~~~~~~~~i~~~~f~k~~~~~i~e~KL   51 (171)
                      ...++|||+||++.++++.  .|. .++|.........--||
T Consensus        65 ~~~~~DKf~I~~~~~~~~~--~d~-~~~fk~~~~~~~~~ikl  103 (107)
T d1rowa_          65 GAPKEDKLVVHFASAPADA--TDA-QAAFVAVAPAGTVTIPM  103 (107)
T ss_dssp             CCCEEEEEEEEEEECCTTC--SCH-HHHHTTCCCCEEEEEEE
T ss_pred             CCCCCCEEEEEEEECCCCC--cCH-HHHhhcCCCCCcEEEEE
Confidence            4468999999999999764  344 68997655444333333

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.11  E-value=0.055  Score=37.28  Aligned_cols=31  Identities=19%  Similarity=0.182  Sum_probs=23.6

Q ss_pred             CCCceeEEEEEeeCCCCCccccchhhhccccCce
Q 030828           12 QCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHV   45 (171)
Q Consensus        12 kckDKFLVQSv~v~~~~~~~~i~~~~f~k~~~~~   45 (171)
                      .++|||+||++.++++.  .|. .++|+......
T Consensus        70 ~~~DKf~I~~~~~~~~~--~d~-~~~fk~~~~~~  100 (109)
T d1m1sa_          70 PKEDKIVIQYAEVPAEE--TDP-MAPFKAGAQQG  100 (109)
T ss_dssp             SCEEEEEEEEEEECTTC--CCT-THHHHTTCCCE
T ss_pred             CCCCEEEEEEEECCCCC--cCH-HHHHhcCCCCC
Confidence            47999999999999864  455 48897655443

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.71  E-value=1.1  Score=28.39  Aligned_cols=35  Identities=20%  Similarity=0.165  Sum_probs=29.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828          106 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLRR  140 (171)
Q Consensus       106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~  140 (171)
                      =|..|..+|..|+++...+.+++..|++++..+++
T Consensus        44 iL~~a~~yI~~L~~~~~~L~~e~~~lk~~~~~~~~   78 (80)
T d1am9a_          44 VLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSKS   78 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            37889999999999999999999999888776553

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.13  E-value=1.3  Score=27.92  Aligned_cols=35  Identities=34%  Similarity=0.505  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828          107 STEARALISKLKDEKNNAVQQNNKLRQDLELLRRE  141 (171)
Q Consensus       107 l~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~  141 (171)
                      |.+|..+|..|+++...+..++..|+.+...|+++
T Consensus        42 L~~A~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~   76 (79)
T d1nlwa_          42 LTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ   76 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888999999998888888888888877777654

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.90  E-value=1.2  Score=26.88  Aligned_cols=30  Identities=20%  Similarity=0.103  Sum_probs=24.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030828          106 KSTEARALISKLKDEKNNAVQQNNKLRQDL  135 (171)
Q Consensus       106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El  135 (171)
                      =|.+|..+|..|+++...+.+|+..|+.++
T Consensus        27 iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~   56 (61)
T d1uklc_          27 VLRKAIDYIKYLQQVNHKLRQENMVLKLAN   56 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            377899999999998888888888776654

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.21  E-value=1.6  Score=27.98  Aligned_cols=36  Identities=22%  Similarity=0.335  Sum_probs=25.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030828          106 KSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRE  141 (171)
Q Consensus       106 kl~ea~a~I~kL~eE~~~~~~q~~~Lq~El~~lr~~  141 (171)
                      -|..|..+|..|+++...+..+...|+++.+.|+++
T Consensus        46 iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~   81 (88)
T d1nkpa_          46 ILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHK   81 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367778888888887777777777777666655544