Citrus Sinensis ID: 030836

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
MCSLQSQHFLNSPLLIFPKFNDNRKFHLNRTRNFGQRIGALSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINM
ccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEcccEEEEccEEEEEccccHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHcc
cccccccccccccEEEccccccccEEEEcccccccccEEEEccHHHccHHHHHHcccccccccEEEEEEcccEEEEEEEccccEEcccEEEEcccccHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcc
mcslqsqhflnspllifpkfndnrkfHLNRTRNFGQRIGALSSVEeflpnatrrkkdslwrggfslgvdlglsrtglalskgfcvrpltVLKLRGEKLELQLLEIAQReetdefiiglpkswdgsetpqsnkvrSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINM
mcslqsqhflnspllifPKFNDNRKFHLNRTRNFgqrigalssveeflpnatrrkkdslwrgGFSLGVDLGLSrtglalskgfcvRPLTVLKLRGEKLELQLLEiaqreetdeFIIGlpkswdgsetpqsnkvrsvagRLAVRaaergwrvylldehrtsaeavdrminm
MCSLQSQHFLNSPLLIFPKFNDNRKFHLNRTRNFGQRIGALSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINM
********FLNSPLLIFPKFNDNRKFHLNRTRNFGQRIGALSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW*************VAGRLAVRAAERGWRVYLLDE**************
*******HFLNSPLLIFPKFNDNRKF*************************************FSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINM
MCSLQSQHFLNSPLLIFPKFNDNRKFHLNRTRNFGQRIGALSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD************VAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINM
*C*LQSQHFLNSPLLIFPKFNDNRKFHLNRTRNFGQRIGALSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MCSLQSQHFLNSPLLIFPKFNDNRKFHLNRTRNFGQRIGALSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query170 2.2.26 [Sep-21-2011]
A1SJC8156 Putative Holliday junctio yes no 0.617 0.673 0.391 2e-08
Q2IQC1137 Putative Holliday junctio yes no 0.588 0.729 0.377 6e-07
Q2RHZ7140 Putative Holliday junctio yes no 0.558 0.678 0.346 8e-07
A5CCV6157 Putative Holliday junctio yes no 0.652 0.707 0.309 1e-06
B4UH04137 Putative Holliday junctio yes no 0.588 0.729 0.367 5e-06
B3CU37157 Putative Holliday junctio yes no 0.652 0.707 0.301 5e-06
B8JDZ9137 Putative Holliday junctio yes no 0.588 0.729 0.367 5e-06
A7HDE0137 Putative Holliday junctio yes no 0.582 0.722 0.380 6e-06
A7MJR8138 Putative Holliday junctio yes no 0.576 0.710 0.336 8e-06
Q3SFS3145 Putative Holliday junctio yes no 0.570 0.668 0.390 1e-05
>sp|A1SJC8|RUVX_NOCSJ Putative Holliday junction resolvase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=Noca_2408 PE=3 SV=1 Back     alignment and function desciption
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 10/115 (8%)

Query: 60  WRGGFSLGVDLGLSRTGLALS--KGFCVRPL-TVLKLRGEKLELQLLEIAQREETD---E 113
            R G  +G+D G +R G+A S   GF   P+ TV + +G+   +  +  A+ +E     E
Sbjct: 1   MRAGVRIGIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLE 60

Query: 114 FIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT--SAEAVDR 166
            ++GLP+S  G E P + KVR  AGRLA R A     V L+DE  T  SAEA+ R
Sbjct: 61  VVVGLPRSLSGREGPAAAKVREFAGRLAARVAP--VPVRLVDERMTTVSAEAMLR 113
Could be a nuclease that resolves Holliday junction intermediates in genetic recombination.
Nocardioides sp. (strain BAA-499 / JS614) (taxid: 196162)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|Q2IQC1|RUVX_ANADE Putative Holliday junction resolvase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=Adeh_1232 PE=3 SV=1 Back     alignment and function description
>sp|Q2RHZ7|RUVX_MOOTA Putative Holliday junction resolvase OS=Moorella thermoacetica (strain ATCC 39073) GN=Moth_1640 PE=3 SV=1 Back     alignment and function description
>sp|A5CCV6|RUVX_ORITB Putative Holliday junction resolvase OS=Orientia tsutsugamushi (strain Boryong) GN=OTBS_0498 PE=3 SV=1 Back     alignment and function description
>sp|B4UH04|RUVX_ANASK Putative Holliday junction resolvase OS=Anaeromyxobacter sp. (strain K) GN=AnaeK_2633 PE=3 SV=1 Back     alignment and function description
>sp|B3CU37|RUVX_ORITI Putative Holliday junction resolvase OS=Orientia tsutsugamushi (strain Ikeda) GN=OTT_1426 PE=3 SV=1 Back     alignment and function description
>sp|B8JDZ9|RUVX_ANAD2 Putative Holliday junction resolvase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=A2cp1_2727 PE=3 SV=1 Back     alignment and function description
>sp|A7HDE0|RUVX_ANADF Putative Holliday junction resolvase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=Anae109_2535 PE=3 SV=1 Back     alignment and function description
>sp|A7MJR8|RUVX_CROS8 Putative Holliday junction resolvase OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=ESA_00393 PE=3 SV=1 Back     alignment and function description
>sp|Q3SFS3|RUVX_THIDA Putative Holliday junction resolvase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=Tbd_2580 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query170
224129716254 predicted protein [Populus trichocarpa] 0.911 0.610 0.705 2e-55
356506432226 PREDICTED: putative Holliday junction re 0.782 0.588 0.746 6e-51
297734533 679 unnamed protein product [Vitis vinifera] 0.782 0.195 0.783 7e-51
359489199229 PREDICTED: putative Holliday junction re 0.752 0.558 0.796 4e-50
449431960235 PREDICTED: putative Holliday junction re 0.752 0.544 0.744 6e-48
297844086238 DNA binding protein [Arabidopsis lyrata 0.952 0.680 0.6 2e-45
255573708239 hydrolase, acting on ester bonds, putati 0.988 0.702 0.613 2e-44
79317769254 putative holliday junction resolvase [Ar 0.770 0.515 0.725 1e-41
414867730235 TPA: holliday junction resolvase [Zea ma 0.711 0.514 0.682 6e-39
226500782235 holliday junction resolvase [Zea mays] g 0.711 0.514 0.682 8e-39
>gi|224129716|ref|XP_002328785.1| predicted protein [Populus trichocarpa] gi|222839083|gb|EEE77434.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/156 (70%), Positives = 125/156 (80%), Gaps = 1/156 (0%)

Query: 15  LIFPKFNDNRKFHLNRTRNFGQRIGALSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSR 74
           L+FP F  +    L+  +   +R+ AL S+ E  PNA RRK D LWRGGFSLGVDLGLSR
Sbjct: 42  LLFPNFTTS-SLQLDSDKPCRRRLRALLSIHEIPPNALRRKNDPLWRGGFSLGVDLGLSR 100

Query: 75  TGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVR 134
           +G+ALSKGF VRPLTVL+LRG+KLEL+LLEIA+ EE DEFIIGLPKSWDG ETPQSNKVR
Sbjct: 101 SGVALSKGFTVRPLTVLELRGQKLELRLLEIAENEEVDEFIIGLPKSWDGKETPQSNKVR 160

Query: 135 SVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINM 170
           SVAGR AV AA RGWRVYL DEH TS EA +RMI+M
Sbjct: 161 SVAGRFAVLAAHRGWRVYLQDEHGTSTEATNRMIDM 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356506432|ref|XP_003521987.1| PREDICTED: putative Holliday junction resolvase-like [Glycine max] Back     alignment and taxonomy information
>gi|297734533|emb|CBI16584.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359489199|ref|XP_002275849.2| PREDICTED: putative Holliday junction resolvase [Vitis vinifera] Back     alignment and taxonomy information
>gi|449431960|ref|XP_004133768.1| PREDICTED: putative Holliday junction resolvase-like [Cucumis sativus] gi|449522992|ref|XP_004168509.1| PREDICTED: putative Holliday junction resolvase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297844086|ref|XP_002889924.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata] gi|297335766|gb|EFH66183.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255573708|ref|XP_002527775.1| hydrolase, acting on ester bonds, putative [Ricinus communis] gi|223532810|gb|EEF34585.1| hydrolase, acting on ester bonds, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|79317769|ref|NP_001031028.1| putative holliday junction resolvase [Arabidopsis thaliana] gi|332190735|gb|AEE28856.1| putative holliday junction resolvase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|414867730|tpg|DAA46287.1| TPA: holliday junction resolvase [Zea mays] Back     alignment and taxonomy information
>gi|226500782|ref|NP_001149481.1| holliday junction resolvase [Zea mays] gi|195627468|gb|ACG35564.1| holliday junction resolvase [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query170
TAIR|locus:1009023117254 AT1G12244 [Arabidopsis thalian 0.970 0.649 0.607 6.9e-47
UNIPROTKB|P0A8I1138 yqgF [Escherichia coli K-12 (t 0.576 0.710 0.317 1e-06
UNIPROTKB|Q8EBZ8141 SO_3347 "Putative Holliday jun 0.6 0.723 0.268 9e-06
TIGR_CMR|SO_3347141 SO_3347 "conserved hypothetica 0.6 0.723 0.268 9e-06
UNIPROTKB|Q0BZU8151 HNE_2300 "Putative Holliday ju 0.605 0.682 0.342 0.00013
UNIPROTKB|Q81LK2137 BAS4282 "Putative Holliday jun 0.582 0.722 0.268 0.00022
TIGR_CMR|BA_4614137 BA_4614 "conserved hypothetica 0.582 0.722 0.268 0.00022
UNIPROTKB|Q5LQY2154 SPO2350 "Putative Holliday jun 0.570 0.629 0.311 0.00048
TIGR_CMR|SPO_2350154 SPO_2350 "conserved hypothetic 0.570 0.629 0.311 0.00048
TAIR|locus:1009023117 AT1G12244 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 107/176 (60%), Positives = 129/176 (73%)

Query:     1 MCSLQSQHFLNSPLLIF--PKFNDNRKFHLNRTRNFGQRI----GALSSVEEFLPNATRR 54
             MCSL   H  +S  + F   K+ +    H  R    G R      A++S++E  PNA RR
Sbjct:    18 MCSL---HSFSSVAISFRTQKYVNTSLVH--RLSPIGYRNYPLPWAVTSIDEIPPNAVRR 72

Query:    55 KKDSLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEF 114
             K D  WRGGFSLGVDLGLSRTG+A+SKG+ V+PLTVLK RG+KLE +LLEIA+ EE DEF
Sbjct:    73 KIDRNWRGGFSLGVDLGLSRTGIAISKGYTVKPLTVLKSRGQKLETRLLEIAEEEEADEF 132

Query:   115 IIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINM 170
             IIGLP+S DG ET QSNK+RSVAGRLA++AAERGWRVY+ DEH T++EA DRMI M
Sbjct:   133 IIGLPRSSDGKETIQSNKIRSVAGRLAIQAAERGWRVYVFDEHGTTSEASDRMIVM 188
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA
GO:0006281 "DNA repair" evidence=IEA
GO:0006310 "DNA recombination" evidence=IEA
GO:0006974 "response to DNA damage stimulus" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016788 "hydrolase activity, acting on ester bonds" evidence=IEA
UNIPROTKB|P0A8I1 yqgF [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EBZ8 SO_3347 "Putative Holliday junction resolvase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3347 SO_3347 "conserved hypothetical protein TIGR00250" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q0BZU8 HNE_2300 "Putative Holliday junction resolvase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
UNIPROTKB|Q81LK2 BAS4282 "Putative Holliday junction resolvase" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4614 BA_4614 "conserved hypothetical protein TIGR00250" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LQY2 SPO2350 "Putative Holliday junction resolvase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2350 SPO_2350 "conserved hypothetical protein TIGR00250" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query170
pfam03652134 pfam03652, UPF0081, Uncharacterized protein family 9e-19
PRK00109138 PRK00109, PRK00109, Holliday junction resolvase-li 1e-13
COG0816141 COG0816, COG0816, Predicted endonuclease involved 7e-13
smart0073299 smart00732, YqgFc, Likely ribonuclease with RNase 2e-11
TIGR00250130 TIGR00250, RNAse_H_YqgF, RNAse H-fold protein YqgF 1e-08
>gnl|CDD|217659 pfam03652, UPF0081, Uncharacterized protein family (UPF0081) Back     alignment and domain information 
 Score = 77.1 bits (191), Expect = 9e-19
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 66  LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
           LG+D+G  R G+A+S        PL  ++ +    +L +L E+ +  + D  ++GLP + 
Sbjct: 4   LGLDVGTKRIGVAISDPLGILASPLETIRRKNGNPDLEELAELIKEWQPDGIVVGLPLNM 63

Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMIN 169
           DGSE   + +VR  A RL  R    G  V L+DE  T+ EA   +  
Sbjct: 64  DGSEGEMTKRVRKFARRLKKR---FGLPVELVDERLTTVEAERILRE 107

Length = 134
>gnl|CDD|234639 PRK00109, PRK00109, Holliday junction resolvase-like protein; Reviewed Back     alignment and domain information
>gnl|CDD|223886 COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B Back     alignment and domain information
>gnl|CDD|128971 smart00732, YqgFc, Likely ribonuclease with RNase H fold Back     alignment and domain information
>gnl|CDD|129352 TIGR00250, RNAse_H_YqgF, RNAse H-fold protein YqgF Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 170
PRK00109138 Holliday junction resolvase-like protein; Reviewed 100.0
PF03652135 UPF0081: Uncharacterised protein family (UPF0081); 100.0
COG0816141 Predicted endonuclease involved in recombination ( 99.98
TIGR00250130 RNAse_H_YqgF RNAse H-fold protein YqgF. This prote 99.98
smart0073299 YqgFc Likely ribonuclease with RNase H fold. YqgF 99.59
PRK00039164 ruvC Holliday junction resolvase; Reviewed 97.75
PF02075149 RuvC: Crossover junction endodeoxyribonuclease Ruv 97.66
cd00529154 RuvC_resolvase Holliday junction resolvases (HJRs) 97.56
TIGR00228156 ruvC crossover junction endodeoxyribonuclease RuvC 97.38
COG2183 780 Tex Transcriptional accessory protein [Transcripti 97.02
COG1548 330 Predicted transcriptional regulator/sugar kinase [ 96.76
PF14639150 YqgF: Holliday-junction resolvase-like of SPT6 ; P 96.52
COG0817160 RuvC Holliday junction resolvasome, endonuclease s 96.39
TIGR0176682 tspaseT_teng_C transposase, IS605 OrfB family, cen 94.65
PF04312138 DUF460: Protein of unknown function (DUF460); Inte 94.0
PRK09557 301 fructokinase; Reviewed 93.96
COG1940 314 NagC Transcriptional regulator/sugar kinase [Trans 93.95
TIGR00744 318 ROK_glcA_fam ROK family protein (putative glucokin 92.32
PRK05082 291 N-acetylmannosamine kinase; Provisional 92.27
PRK13310 303 N-acetyl-D-glucosamine kinase; Provisional 91.17
PRK13311 256 N-acetyl-D-glucosamine kinase; Provisional 90.81
PRK09698 302 D-allose kinase; Provisional 90.32
PRK13321 256 pantothenate kinase; Reviewed 89.79
PF14239176 RRXRR: RRXRR protein 89.46
PF07318 343 DUF1464: Protein of unknown function (DUF1464); In 88.34
PF01548144 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 T 88.26
PRK00292 316 glk glucokinase; Provisional 87.63
PF00480179 ROK: ROK family; InterPro: IPR000600 A family of b 87.55
COG2433 652 Uncharacterized conserved protein [Function unknow 87.36
PF0728269 OrfB_Zn_ribbon: Putative transposase DNA-binding d 87.12
PHA02942383 putative transposase; Provisional 85.56
COG1646 240 Predicted phosphate-binding enzymes, TIM-barrel fo 84.87
PRK13320 244 pantothenate kinase; Reviewed 84.79
TIGR03725202 bact_YeaZ universal bacterial protein YeaZ. This f 84.7
COG1214 220 Inactive homolog of metal-dependent proteases, put 83.63
PRK13318 258 pantothenate kinase; Reviewed 83.34
PRK09982142 universal stress protein UspD; Provisional 83.22
PRK12408 336 glucokinase; Provisional 83.19
PF05188137 MutS_II: MutS domain II; InterPro: IPR007860 Misma 81.38
>PRK00109 Holliday junction resolvase-like protein; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=2e-32  Score=213.55  Aligned_cols=105  Identities=31%  Similarity=0.481  Sum_probs=96.9

Q ss_pred             CceEEEEecCCCeEEEEEecC--CeeEEeEEEEccch-hHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHH
Q 030836           62 GGFSLGVDLGLSRTGLALSKG--FCVRPLTVLKLRGE-KLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAG  138 (170)
Q Consensus        62 ~g~iLgID~G~kRiGVAvsD~--~~a~Pl~~i~~~~~-~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~  138 (170)
                      .+++||||||+||||||+||+  .+|+|+.++.+++. ....+|.+++++|+++.||||+|+++||+.+++++.|++|++
T Consensus         3 ~~~iLalD~G~kriGvAv~d~~~~~a~pl~~i~~~~~~~~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~   82 (138)
T PRK00109          3 SGRILGLDVGTKRIGVAVSDPLGGTAQPLETIKRNNGTPDWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFAN   82 (138)
T ss_pred             CCcEEEEEeCCCEEEEEEecCCCCEEcCEEEEEcCCCchHHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHH
Confidence            467999999999999999995  58999999987543 357899999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCccEEEEcCcccHHHHHHHHHc
Q 030836          139 RLAVRAAERGWRVYLLDEHRTSAEAVDRMIN  169 (170)
Q Consensus       139 ~L~~~~~~~~lpV~lvDER~TT~eA~~~L~e  169 (170)
                      +|++++   ++||++|||||||.+|+++|++
T Consensus        83 ~L~~~~---~~~v~~~DEr~TT~~A~~~l~~  110 (138)
T PRK00109         83 RLEGRF---GLPVVLVDERLSTVEAERALAD  110 (138)
T ss_pred             HHHHHh---CCCEEEEcCCcCHHHHHHHHHH
Confidence            999885   8999999999999999999975

>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination Back     alignment and domain information
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B Back     alignment and domain information
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF Back     alignment and domain information
>smart00732 YqgFc Likely ribonuclease with RNase H fold Back     alignment and domain information
>PRK00039 ruvC Holliday junction resolvase; Reviewed Back     alignment and domain information
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination [] Back     alignment and domain information
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination Back     alignment and domain information
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC Back     alignment and domain information
>COG2183 Tex Transcriptional accessory protein [Transcription] Back     alignment and domain information
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A Back     alignment and domain information
>COG0817 RuvC Holliday junction resolvasome, endonuclease subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01766 tspaseT_teng_C transposase, IS605 OrfB family, central region Back     alignment and domain information
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function Back     alignment and domain information
>PRK09557 fructokinase; Reviewed Back     alignment and domain information
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) Back     alignment and domain information
>PRK05082 N-acetylmannosamine kinase; Provisional Back     alignment and domain information
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional Back     alignment and domain information
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional Back     alignment and domain information
>PRK09698 D-allose kinase; Provisional Back     alignment and domain information
>PRK13321 pantothenate kinase; Reviewed Back     alignment and domain information
>PF14239 RRXRR: RRXRR protein Back     alignment and domain information
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length Back     alignment and domain information
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition Back     alignment and domain information
>PRK00292 glk glucokinase; Provisional Back     alignment and domain information
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames [] Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins Back     alignment and domain information
>PHA02942 putative transposase; Provisional Back     alignment and domain information
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] Back     alignment and domain information
>PRK13320 pantothenate kinase; Reviewed Back     alignment and domain information
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ Back     alignment and domain information
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK13318 pantothenate kinase; Reviewed Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK12408 glucokinase; Provisional Back     alignment and domain information
>PF05188 MutS_II: MutS domain II; InterPro: IPR007860 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query170
1ovq_A138 Solution Structure Of The Hypothetical Protein Yqgf 2e-05
1nmn_A138 Structure Of Yqgf From Escherichia Coli, A Hypothet 2e-05
1nu0_A138 Structure Of The Double Mutant (L6m; F134m, Semet F 4e-05
>pdb|1OVQ|A Chain A, Solution Structure Of The Hypothetical Protein Yqgf From Escherichia Coli Length = 138 Back     alignment and structure 
Iteration: 1

 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 63  GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
           G  L  D G    G+A+ +      RPL  +K +    +  ++E   +E + DE I+GLP
Sbjct: 3   GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEA 163
            + DG+E P + + R  A R+  R    G  V L DE  ++ EA
Sbjct: 63  LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEA 103
>pdb|1NMN|A Chain A, Structure Of Yqgf From Escherichia Coli, A Hypothetical Protein Length = 138 Back     alignment and structure
>pdb|1NU0|A Chain A, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of Yqgf From Escherichia Coli, A Hypothetical Protein Length = 138 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query170
1nu0_A138 Hypothetical protein YQGF; structural genomics, st 4e-18
1vhx_A150 Putative holliday junction resolvase; structural g 1e-17
1iv0_A98 Hypothetical protein; rnaseh-like, YQGF, structura 2e-17
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A Length = 138 Back     alignment and structure
 Score = 74.9 bits (185), Expect = 4e-18
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 66  LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
           +  D G    G+A+        RPL  +K +    +   +  + +  + DE I+GLP + 
Sbjct: 6   MAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNM 65

Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINM 170
           DG+E P + + R  A R+  R    G  V L DE  ++ EA   +   
Sbjct: 66  DGTEQPLTARARKFANRIHGR---FGVEVKLHDERLSTVEARSGLFEQ 110
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8 Length = 150 Back     alignment and structure
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8 Length = 98 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query170
1nu0_A138 Hypothetical protein YQGF; structural genomics, st 100.0
1iv0_A98 Hypothetical protein; rnaseh-like, YQGF, structura 99.97
1vhx_A150 Putative holliday junction resolvase; structural g 99.96
4ep4_A166 Crossover junction endodeoxyribonuclease RUVC; res 98.48
1hjr_A158 Holliday junction resolvase (RUVC); site-specific 97.88
3bzc_A 785 TEX; helix-turn-helix, helix-hairpin-helix, S1 dom 97.83
3psf_A 1030 Transcription elongation factor SPT6; nucleus; 2.5 97.14
3psi_A 1219 Transcription elongation factor SPT6; nucleus; 3.3 97.0
3epq_A 302 Putative fructokinase; SCRK, ADP binding, PSI2, MC 94.85
3vov_A 302 Glucokinase, hexokinase; ROK, sugar kinase, transf 94.75
2ch5_A 347 NAGK protein; transferase, N-acetylglucosamine, gl 94.36
3vgl_A 321 Glucokinase; ROK family, transferase; HET: BGC ANP 93.91
2hoe_A 380 N-acetylglucosamine kinase; TM1224, structural gen 93.44
1saz_A 381 Probable butyrate kinase 2; askha (acetate and sug 93.32
2ap1_A 327 Putative regulator protein; zinc binding protein, 92.24
2qm1_A 326 Glucokinase; alpha-beta structure, putative helix- 92.2
3djc_A 266 Type III pantothenate kinase; structural genomics, 92.12
3r8e_A 321 Hypothetical sugar kinase; ribonuclease H-like mot 92.06
2gup_A 292 ROK family protein; sugar kinase, streptococcus pn 91.42
3htv_A 310 D-allose kinase, allokinase; NP_418508.1, structur 91.23
2e2o_A 299 Hexokinase; acetate and sugar kinases, HSP70, acti 90.96
1z6r_A 406 MLC protein; transcriptional repressor, ROK family 90.72
3mcp_A 366 Glucokinase; structural genomics, joint center for 90.42
3r6m_A 213 YEAZ, resuscitation promoting factor; actin/HSP70 90.33
1z05_A 429 Transcriptional regulator, ROK family; structural 90.22
2gel_A 231 Putative GRAM negative resuscitation promoting FA; 89.72
4db3_A 327 Glcnac kinase, N-acetyl-D-glucosamine kinase; stru 89.25
4htl_A 297 Beta-glucoside kinase; structural genomics, sugar 89.16
2aa4_A 289 Mannac kinase, putative N-acetylmannosamine kinase 89.15
1zbs_A 291 Hypothetical protein PG1100; alpha-beta protein., 88.27
1woq_A 267 Inorganic polyphosphate/ATP-glucomannokinase; tran 88.26
2ivn_A 330 O-sialoglycoprotein endopeptidase; UP1 keops compl 87.19
2yhw_A 343 Bifunctional UDP-N-acetylglucosamine 2-epimerase/N 86.89
3h1q_A 272 Ethanolamine utilization protein EUTJ; ethanolamin 86.41
2a6a_A 218 Hypothetical protein TM0874; glycoprotein endopept 85.5
2h3g_X 268 Biosynthetic protein; pantothenate kinase, anthrax 85.2
3eno_A 334 Putative O-sialoglycoprotein endopeptidase; hydrol 84.78
3lm2_A 226 Putative kinase; structural genomics, joint center 83.46
1sz2_A 332 Glucokinase, glucose kinase; ATP-dependent, glucos 82.55
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A Back     alignment and structure
Probab=100.00  E-value=2.4e-34  Score=223.54  Aligned_cols=105  Identities=29%  Similarity=0.426  Sum_probs=91.9

Q ss_pred             CceEEEEecCCCeEEEEEecC--CeeEEeEEEEccc-hhHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHH
Q 030836           62 GGFSLGVDLGLSRTGLALSKG--FCVRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAG  138 (170)
Q Consensus        62 ~g~iLgID~G~kRiGVAvsD~--~~a~Pl~~i~~~~-~~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~  138 (170)
                      .+++||||||+||||||+||+  .+|+|+++|.+++ ...+++|.+++++|+++.||||+|++|||+++++++++++|++
T Consensus         2 ~~~iLglD~G~kriGvAvsd~~~~~A~pl~ti~~~~~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~   81 (138)
T 1nu0_A            2 SGTLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFAN   81 (138)
T ss_dssp             CCEEEEEECCSSEEEEEEEETTTTEEEEEEEEEEETTEECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCEEEEEEEcCCCCEEeeEEEEEcCCcchHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHH
Confidence            358999999999999999996  4899999998643 3457899999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCccEEEEcCcccHHHHHHHHHc
Q 030836          139 RLAVRAAERGWRVYLLDEHRTSAEAVDRMIN  169 (170)
Q Consensus       139 ~L~~~~~~~~lpV~lvDER~TT~eA~~~L~e  169 (170)
                      +|++++   ++||++||||+||.+|++.|++
T Consensus        82 ~L~~~~---~lpV~~~DERlTT~~A~~~l~~  109 (138)
T 1nu0_A           82 RIHGRF---GVEVKLHDERLSTVEARSGLFE  109 (138)
T ss_dssp             HHHHHH---CCCEEEEEEECCCCCC------
T ss_pred             HHHHHh---CCCEEEEcCCcCHHHHHHHHHH
Confidence            999986   7999999999999999999976
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8 Back     alignment and structure
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8 Back     alignment and structure
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A Back     alignment and structure
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6 Back     alignment and structure
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A Back     alignment and structure
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} Back     alignment and structure
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} Back     alignment and structure
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* Back     alignment and structure
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* Back     alignment and structure
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Back     alignment and structure
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A* Back     alignment and structure
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp} Back     alignment and structure
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} Back     alignment and structure
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12} Back     alignment and structure
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* Back     alignment and structure
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A Back     alignment and structure
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis} Back     alignment and structure
>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus} Back     alignment and structure
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Back     alignment and structure
>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A Back     alignment and structure
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} Back     alignment and structure
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} Back     alignment and structure
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5 Back     alignment and structure
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* Back     alignment and structure
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9 Back     alignment and structure
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} Back     alignment and structure
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} Back     alignment and structure
>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens} Back     alignment and structure
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 170
d1iv0a_98 c.55.3.8 (A:) Hypothetical protein, YqgF homologue 6e-13
d1vhxa_140 c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Ba 3e-11
d1nu0a_138 c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Es 1e-09
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]} Length = 98 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein, YqgF homologue
species: Thermus thermophilus [TaxId: 274]

 Score = 59.6 bits (144), Expect = 6e-13
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 66  LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
             +D+G +R GLA+             L  +  + +++ LL+  +RE   + ++GLP   
Sbjct: 4   GALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLRT 63

Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS 160
           D  E+ Q+ KV  +   L      RG  V L DE  T+
Sbjct: 64  DLKESAQAGKVLPLVEAL----RARGVEVELWDERFTT 97
>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]} Length = 140 Back     information, alignment and structure
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]} Length = 138 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query170
d1nu0a_138 Hypothetical protein YqgF (RuvX) {Escherichia coli 99.98
d1vhxa_140 Hypothetical protein YrrK (RuvX) {Bacillus subtili 99.97
d1iv0a_98 Hypothetical protein, YqgF homologue {Thermus ther 99.97
d3bzka5149 Transcriptional accessory factor Tex {Pseudomonas 98.93
d1hjra_158 RuvC resolvase {Escherichia coli [TaxId: 562]} 97.91
d1xc3a1118 Putative fructokinase YhdR {Bacillus subtilis [Tax 97.01
d2ap1a2117 Putative regulator protein YcfX {Salmonella typhim 96.38
d2aa4a1119 N-acetylmannosamine kinase NanK {Escherichia coli 96.02
d1z6ra2129 Mlc protein {Escherichia coli [TaxId: 562]} 95.9
d1z05a3128 Transcriptional regulator VC2007 {Vibrio cholerae 95.84
d2hoea3128 N-acetylglucosamine kinase {Thermotoga maritima [T 95.47
d2gupa1114 Hypothetical protein SP2142 {Streptococcus pneumon 95.43
d1okja1106 Hypothetical protein YeaZ {Escherichia coli [TaxId 94.61
d1woqa1129 Inorganic polyphosphate/ATP-glucomannokinase PPGMK 92.97
d1sz2a1 319 Glucokinase Glk {Escherichia coli [TaxId: 562]} 91.78
d2a6aa1103 Hypothetical protein TM0874 {Thermotoga maritima [ 90.19
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 89.94
d1dkgd1183 Heat shock protein 70kDa, ATPase fragment {Escheri 87.86
d1q18a1110 Glucokinase Glk {Escherichia coli [TaxId: 562]} 87.25
d1huxa_ 259 Hydroxyglutaryl-CoA dehydratase component A {Acida 85.79
d2f9wa2114 Type III pantothenate kinase, CoaX {Pseudomonas ae 84.22
d1uf3a_ 228 Hypothetical protein TT1561 {Thermus thermophilus 82.29
d2ch5a2117 N-acetylglucosamine kinase, NAGK {Human (Homo sapi 81.69
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 80.84
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YqgF (RuvX)
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=6.6e-33  Score=213.04  Aligned_cols=105  Identities=29%  Similarity=0.443  Sum_probs=92.8

Q ss_pred             CceEEEEecCCCeEEEEEecCC--eeEEeEEEEccch-hHHHHHHHHHHHcCCCEEEEeecCCCCCCCChhHHHHHHHHH
Q 030836           62 GGFSLGVDLGLSRTGLALSKGF--CVRPLTVLKLRGE-KLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAG  138 (170)
Q Consensus        62 ~g~iLgID~G~kRiGVAvsD~~--~a~Pl~~i~~~~~-~~~~~L~~li~e~~v~~IVVGlPl~~dGt~s~~~~~vr~F~~  138 (170)
                      .|++||||||+||||||+||..  +|+|+.++.+.+. .++..|.+++++|+|+.||||+|++|+|+.+++++.+++|++
T Consensus         2 ~griLgiD~G~kriGvAvsd~~~~~a~pl~~i~~~~~~~~~~~l~~i~~e~~~~~iVvG~P~~~~g~~~~~~~~v~~f~~   81 (138)
T d1nu0a_           2 SGTLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFAN   81 (138)
T ss_dssp             CCEEEEEECCSSEEEEEEEETTTTEEEEEEEEEEETTEECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCEEEEEEeCCCCCccccceeeecccchhhHHHHHHHhhccCccEEEeecccccccchHHHHHHHHHHHH
Confidence            4899999999999999999964  8999999987554 468899999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCccEEEEcCcccHHHHHHHHHc
Q 030836          139 RLAVRAAERGWRVYLLDEHRTSAEAVDRMIN  169 (170)
Q Consensus       139 ~L~~~~~~~~lpV~lvDER~TT~eA~~~L~e  169 (170)
                      .|++++   ++||++||||+||.+|++.|++
T Consensus        82 ~L~~~~---~i~V~~~DEr~TS~eA~~~l~~  109 (138)
T d1nu0a_          82 RIHGRF---GVEVKLHDERLSTVEARSGLFE  109 (138)
T ss_dssp             HHHHHH---CCCEEEEEEECCCCCC------
T ss_pred             HHhhcc---CCCeEEEeccccHHHHHHHHHH
Confidence            999986   7999999999999999998865
>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]} Back     information, alignment and structure
>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2f9wa2 c.55.1.13 (A:1-114) Type III pantothenate kinase, CoaX {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure