Citrus Sinensis ID: 030852

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MAAQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIERKNHENILSPS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEcccccccccccccccccccccccEEEEEEEEEEccccccccEEEEEccccccccEEEEEEEccccEEEcccccccEEEccccEEEEccccccccccccccccccccEEEEEEEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEccccccccccccccccccccccccEEEEEEEEEEccccccccEEEEEccccccccEEEEEEEccccEEEcccccccEEcccccEEEEEccccccccccccccccHccEEEEEEEEEccHHHcccccccccccccccc
Coil and Loop (DISEMBL)
MAAQNFLWSFTKNCFTFGLIGLTisdryasivpvrgssmsptfnlttdsfmgslsddYVLVEKFCLQkykfshgdvivfcspsnhkekHVKRIIglpgdwigtpmtndvmkvpnghcwvegdnpsssldsrsfgpiplglikgwvthilwppqrvrhierknhenilsps
Flexible Loop (DISEMBL)
MAAQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPpqrvrhierknhenilsps
Low Complexity Region (SEG)
MAAQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIERKNHENILSPS
Disordered region (IsUnstruct)
****NFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVE************FGPIPLGLIKGWVTHILWPPQRVRH*************
Disordered Region (DISOPRED)
***QNFL*SFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIER**********
Disordered Region (DISEMBL)
MAAQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIERKNHENILSPS
Disordered Region (DISPRO)
*AAQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIE***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIERKNHENILSPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
Q6AZD4	183	Mitochondrial inner membr	yes	no	0.894	0.830	0.373	5e-27
Q8BPT6	175	Mitochondrial inner membr	yes	no	0.894	0.868	0.405	6e-27
Q96T52	175	Mitochondrial inner membr	yes	no	0.888	0.862	0.394	1e-26
Q2KI92	177	Mitochondrial inner membr	yes	no	0.894	0.858	0.392	2e-26
Q5PQ63	170	Mitochondrial inner membr	N/A	no	0.864	0.864	0.379	5e-24
P46972	177	Mitochondrial inner membr	yes	no	0.758	0.728	0.419	5e-21
Q96LU5	166	Mitochondrial inner membr	no	no	0.741	0.759	0.375	6e-18
Q9CQU8	166	Mitochondrial inner membr	no	no	0.735	0.753	0.374	7e-18
Q9UST2	180	Mitochondrial inner membr	yes	no	0.847	0.8	0.369	1e-16
O74800	157	Mitochondrial inner membr	no	no	0.629	0.681	0.403	4e-16

>sp|Q6AZD4|IMP2L_DANRE Mitochondrial inner membrane protease subunit 2 OS=Danio rerio GN=immp2l PE=2 SV=1

 Score =  120 bits (300), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 93/158 (58%), Gaps = 6/158 (3%)

Query: 3   AQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVE 62
            + +  +F    F    + +T+ DR A +  V G+SM P+ N   +S     S D VL+ 
Sbjct: 7   GRRYFKAFVSGFFVAVPVTVTVLDRLAYVARVEGASMQPSLNPDGES-----SPDVVLLN 61

Query: 63  KFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVMKVPNGHCWVEG 121
           ++ ++ Y    GD++   SP N ++K +KR+IG+ GD+I T    N  ++VP+GH W+EG
Sbjct: 62  RWSVRNYHVQRGDIVSVLSPKNPQQKIIKRVIGIEGDFIKTLGYKNRYVRVPDGHLWIEG 121

Query: 122 DNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIE 159
           D+   S DS +FGP+ LGL+ G  +HI+WPP R + IE
Sbjct: 122 DHHGHSFDSNAFGPVSLGLVHGRASHIIWPPSRWQRIE 159

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space.
Danio rerio (taxid: 7955)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|Q8BPT6|IMP2L_MOUSE Mitochondrial inner membrane protease subunit 2 OS=Mus musculus GN=Immp2l PE=2 SV=1

 Score =  120 bits (300), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 91/158 (57%), Gaps = 6/158 (3%)

Query: 3   AQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVE 62
           A+    +F K  F    + +T  DR A +  V GSSM P+ N       GS S D VL+ 
Sbjct: 8   ARRCFKAFCKGFFVAVPVAVTFLDRVACVARVEGSSMQPSLNPG-----GSQSSDVVLLN 62

Query: 63  KFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVMKVPNGHCWVEG 121
            + ++ ++   GD++   SP N ++K +KR+I L GD + T    N ++KVP GH WVEG
Sbjct: 63  HWKVRNFEVQRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRLVKVPRGHMWVEG 122

Query: 122 DNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIE 159
           D+   S DS SFGP+ LGL+    THILWPP+R + +E
Sbjct: 123 DHHGHSFDSNSFGPVSLGLLHAHATHILWPPERWQRLE 160

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. Known to process the nuclear encoded protein DIABLO.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q96T52|IMP2L_HUMAN Mitochondrial inner membrane protease subunit 2 OS=Homo sapiens GN=IMMP2L PE=2 SV=1

 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 91/157 (57%), Gaps = 6/157 (3%)

Query: 4   QNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEK 63
           + ++ +F K  F    + +T  DR A +  V G+SM P+ N       GS S D VL+  
Sbjct: 9   KRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPG-----GSQSSDVVLLNH 63

Query: 64  FCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVMKVPNGHCWVEGD 122
           + ++ ++   GD++   SP N ++K +KR+I L GD + T    N  +KVP GH WVEGD
Sbjct: 64  WKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWVEGD 123

Query: 123 NPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIE 159
           +   S DS SFGP+ LGL+    THILWPP+R + +E
Sbjct: 124 HHGHSFDSNSFGPVSLGLLHAHATHILWPPERWQKLE 160

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. Known to process the nuclear encoded protein DIABLO.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q2KI92|IMP2L_BOVIN Mitochondrial inner membrane protease subunit 2 OS=Bos taurus GN=IMMP2L PE=2 SV=1

 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 90/158 (56%), Gaps = 6/158 (3%)

Query: 3   AQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVE 62
            + +  +F K  F    + +T  DR A +  V G+SM P+ N       GS S D VL+ 
Sbjct: 8   VRRYFKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPG-----GSQSSDVVLLN 62

Query: 63  KFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVMKVPNGHCWVEG 121
            + ++ ++   GD++   SP N ++K +KR+I L GD + T    N  +KVP GH WVEG
Sbjct: 63  HWKVRNFEVQRGDIVSLVSPKNPEQKIIKRVIALEGDIVKTMGHKNRYVKVPRGHIWVEG 122

Query: 122 DNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIE 159
           D+   S DS SFGP+ LGL+    THILWPP+R + +E
Sbjct: 123 DHHGHSFDSNSFGPVSLGLLHAHATHILWPPKRWQKLE 160

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. Known to process the nuclear encoded protein DIABLO.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q5PQ63|IMP2L_XENLA Mitochondrial inner membrane protease subunit 2 OS=Xenopus laevis GN=immp2l PE=2 SV=1

 Score =  110 bits (275), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 81/153 (52%), Gaps = 6/153 (3%)

Query: 3   AQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVE 62
            + ++ +F    F    + +T  DR A I  V G SM P+ N            D VL+ 
Sbjct: 5   GRRYVRAFISGFFVAVPVTVTFLDRVACIARVEGVSMQPSLNPDARG-----ESDIVLLN 59

Query: 63  KFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVMKVPNGHCWVEG 121
           ++  + Y    GD++   SP N ++K +KR+I L GD + T    N  +KVP GH WVEG
Sbjct: 60  RWRARNYDVQRGDIVSLVSPKNPEQKIIKRVIALEGDIVKTLGHKNRYVKVPRGHVWVEG 119

Query: 122 DNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQR 154
           D+   S DS +FGP+ LGL+    THILWPP R
Sbjct: 120 DHHGHSFDSNAFGPVSLGLLHSHATHILWPPNR 152

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P46972|IMP2_YEAST Mitochondrial inner membrane protease subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IMP2 PE=1 SV=1

 Score =  100 bits (248), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/136 (41%), Positives = 82/136 (60%), Gaps = 7/136 (5%)

Query: 22  LTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQK-YKFSHGDVIVFC 80
           LTI++    I  V+G+SM PT N  T++    L+ D+VL+ KF ++     S  D+I+F 
Sbjct: 25  LTINNNVVHIAQVKGTSMQPTLNPQTET----LATDWVLLWKFGVKNPSNLSRDDIILFK 80

Query: 81  SPSNHKEKHVKRIIGLPGDWIGT--PMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPL 138
           +P+N ++ + KR+ GLP D I T  P     + +P GH WVEGDN   S+DS +FGPI  
Sbjct: 81  APTNPRKVYCKRVKGLPFDTIDTKFPYPKPQVNLPRGHIWVEGDNYFHSIDSNTFGPISS 140

Query: 139 GLIKGWVTHILWPPQR 154
           GL+ G    I+WPP R
Sbjct: 141 GLVIGKAITIVWPPSR 156

Catalytic component of the mitochondrial inner membrane peptidase (IMP) complex. IMP catalyzes the removal of signal peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. The two catalytic IMP subunits seem to have non-overlapping substrate specificities. IMP2 substrates include nuclear encoded CYB2, mitochondrially encoded COX2 and cytochrome c1. Required for the stability of IMP1.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q96LU5|IMP1L_HUMAN Mitochondrial inner membrane protease subunit 1 OS=Homo sapiens GN=IMMP1L PE=2 SV=1

 Score = 90.1 bits (222), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 72/149 (48%), Gaps = 23/149 (15%)

Query: 16  TFGLIGLTIS---------DRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCL 66
           TF L+G TI          +    +V   G SM PT            + D V  E    
Sbjct: 9   TFRLVGYTIQYGCIAHCAFEYVGGVVMCSGPSMEPTIQ----------NSDIVFAENLSR 58

Query: 67  QKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMK----VPNGHCWVEGD 122
             Y    GD+++  SPS+ K    KR+IGL GD I T   +D  K    VP GH W+EGD
Sbjct: 59  HFYGIQRGDIVIAKSPSDPKSNICKRVIGLEGDKILTTSPSDFFKSHSYVPMGHVWLEGD 118

Query: 123 NPSSSLDSRSFGPIPLGLIKGWVTHILWP 151
           N  +S DSR +GPIP GLI+G +   +WP
Sbjct: 119 NLQNSTDSRCYGPIPYGLIRGRIFFKIWP 147

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. Known to process the nuclear encoded protein DIABLO.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9CQU8|IMP1L_MOUSE Mitochondrial inner membrane protease subunit 1 OS=Mus musculus GN=Immp1l PE=2 SV=1

 Score = 89.7 bits (221), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 69/139 (49%), Gaps = 14/139 (10%)

Query: 17  FGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDV 76
           +G I     +    +V   G SM PT            + D V  E      Y    GD+
Sbjct: 19  YGCIAHCAFEYVGGVVMCSGPSMEPTIQ----------NSDIVFAENLSRHFYGIQRGDI 68

Query: 77  IVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMK----VPNGHCWVEGDNPSSSLDSRS 132
           ++  SPS+ K    KR+IGL GD I +   +DV K    VP GH W+EGDN  +S DSR 
Sbjct: 69  VIAKSPSDPKSNICKRVIGLEGDKILSTSPSDVFKSRSYVPTGHVWLEGDNLQNSTDSRY 128

Query: 133 FGPIPLGLIKGWVTHILWP 151
           +GPIP GLI+G +   +WP
Sbjct: 129 YGPIPYGLIRGRIFFKIWP 147

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. Known to process the nuclear encoded protein DIABLO.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9UST2|IMP2L_SCHPO Mitochondrial inner membrane protease subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC336.13c PE=3 SV=1

 Score = 86.3 bits (212), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 84/165 (50%), Gaps = 21/165 (12%)

Query: 12  KNCFTFGLIGLT--------ISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEK 63
           K+ F   L+G+T        +     S+  + G SM P FN  T+     L  D VL+ K
Sbjct: 12  KSVFFKNLVGITLWVPVLMFVEQHVVSVGTIEGRSMKPAFNPETNM----LQRDRVLLWK 67

Query: 64  FCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT--PMTNDVMKVPNGHCWVEG 121
           +  + YK   GDV++  SP N +E  VKR++G+  D + T  P    ++ VP GH WVEG
Sbjct: 68  WN-KDYK--RGDVVILRSPENPEELLVKRVLGVEYDIMKTRPPKKLSLVPVPEGHVWVEG 124

Query: 122 DNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIE----RKN 162
           D    S+DS  FGP+  GLI   V  IL+P  R   I+    RKN
Sbjct: 125 DEQFHSIDSNKFGPVSTGLITAKVIAILFPFSRAGRIDHEGFRKN 169

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|O74800|IMP1_SCHPO Mitochondrial inner membrane protease subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=imp1 PE=3 SV=1

 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 12/119 (10%)

Query: 36  GSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQ-KYKFSHGDVIVFCSPSNHKEKHVKRII 94
           G SM PT N            ++VL++K   +     S GDV+V   PS+ K+   KRII
Sbjct: 33  GPSMMPTLNS---------GGEFVLLDKLHGRFARSCSVGDVVVSAKPSDSKQHVCKRII 83

Query: 95  GLPGD--WIGTPMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWP 151
           G+PGD  ++    +N  + +P GH W+ GDN + SLDSR++GP+P+GLIK  V   +WP
Sbjct: 84  GMPGDTIYVDPTSSNKKITIPLGHVWLAGDNIAHSLDSRNYGPVPMGLIKAKVIARVWP 142

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
255574385	170	mitochondrial inner membrane protease su	1.0	1.0	0.729	2e-66
225440672	170	PREDICTED: mitochondrial inner membrane	0.947	0.947	0.695	9e-64
449439902	184	PREDICTED: mitochondrial inner membrane	1.0	0.923	0.652	5e-63
224140407	169	predicted protein [Populus trichocarpa]	0.988	0.994	0.670	1e-62
388512387	173	unknown [Lotus japonicus]	0.994	0.976	0.658	9e-60
116794380	170	unknown [Picea sitchensis]	0.947	0.947	0.645	1e-56
357481155	165	Mitochondrial inner membrane protease su	0.964	0.993	0.583	6e-55
351727543	170	uncharacterized protein LOC100499932 [Gl	0.935	0.935	0.603	4e-54
351722229	169	uncharacterized protein LOC100527429 [Gl	0.935	0.940	0.610	4e-54
297829426	154	signal peptidase I family protein [Arabi	0.894	0.987	0.613	5e-52

>gi|255574385|ref|XP_002528106.1| mitochondrial inner membrane protease subunit, putative [Ricinus communis] gi|223532495|gb|EEF34285.1| mitochondrial inner membrane protease subunit, putative [Ricinus communis]

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/170 (72%), Positives = 139/170 (81%)

Query: 1   MAAQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVL 60
           MA+ NFLWS  K  FT GLIG+TISDRYASIVPVRG SMSPTFN  T +F GS  DD VL
Sbjct: 1   MASSNFLWSLAKKYFTVGLIGITISDRYASIVPVRGVSMSPTFNPGTSTFWGSFIDDCVL 60

Query: 61  VEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVE 120
           VEKFCL+KY+FSHGDV+VF SPSNHKEKH+KRIIGLPGDWIGTP   DV+KVP GHCWVE
Sbjct: 61  VEKFCLEKYRFSHGDVVVFRSPSNHKEKHIKRIIGLPGDWIGTPHAYDVVKVPEGHCWVE 120

Query: 121 GDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIERKNHENILSPS 170
           GDN  SS+DSR FGP+PLGLI G VTHI+WPPQR+  +E+K  +  LS S
Sbjct: 121 GDNLLSSMDSRYFGPVPLGLISGRVTHIVWPPQRIGEVEKKIPQGRLSSS 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440672|ref|XP_002279805.1| PREDICTED: mitochondrial inner membrane protease subunit 2 [Vitis vinifera] gi|297740215|emb|CBI30397.3| unnamed protein product [Vitis vinifera]

 Score =  248 bits (632), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 112/161 (69%), Positives = 131/161 (81%)

Query: 1   MAAQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVL 60
           M  +NFLW F K CFTFGLIGLTISDRYASI  V+G SM PTFN    +FMGSL+DDYVL
Sbjct: 1   MGTRNFLWDFGKKCFTFGLIGLTISDRYASIAHVQGLSMYPTFNPNARTFMGSLTDDYVL 60

Query: 61  VEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVE 120
           +EKFCL+KYKFSHGDVI F SP+NH+EK +KRII LPGDWI  P + D +++P GHCWVE
Sbjct: 61  LEKFCLEKYKFSHGDVIAFRSPNNHREKQIKRIIALPGDWITAPHSYDALRIPEGHCWVE 120

Query: 121 GDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIERK 161
           GDN +SSLDSRSFGP+PLGL  G  THI+WPPQR+  +ER+
Sbjct: 121 GDNSASSLDSRSFGPVPLGLACGRATHIVWPPQRIGEVERR 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439902|ref|XP_004137724.1| PREDICTED: mitochondrial inner membrane protease subunit 2-like [Cucumis sativus] gi|449483475|ref|XP_004156603.1| PREDICTED: mitochondrial inner membrane protease subunit 2-like [Cucumis sativus]

 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 111/170 (65%), Positives = 137/170 (80%)

Query: 1   MAAQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVL 60
           MA +N +W+  K  FTFG+IG+TISDRYAS+VP+RG+SMSPTFN    S  G ++ DYVL
Sbjct: 1   MANRNLVWNVVKKSFTFGIIGVTISDRYASVVPIRGASMSPTFNPIATSLTGPMTGDYVL 60

Query: 61  VEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVE 120
           VEKFCL+KYKFS GDVIV+ SP N+KEK VKRII LPGDW+GT  T DV+KVP GHCWVE
Sbjct: 61  VEKFCLEKYKFSPGDVIVYRSPCNYKEKQVKRIIALPGDWVGTRQTYDVVKVPEGHCWVE 120

Query: 121 GDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIERKNHENILSPS 170
           GDNP  S+DSRSFGPIP+GLI+G V+HI+WPPQR+  +E+K  +   +P+
Sbjct: 121 GDNPECSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVEKKYPQGESNPT 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140407|ref|XP_002323574.1| predicted protein [Populus trichocarpa] gi|222868204|gb|EEF05335.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/170 (67%), Positives = 141/170 (82%), Gaps = 2/170 (1%)

Query: 1   MAAQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVL 60
           M + + LW+ TK   T G+IGLTI+DRYAS+VPVRG SMSPTFN  T++ +GSL DD VL
Sbjct: 1   MGSGSLLWNLTKKYLTVGVIGLTITDRYASVVPVRGGSMSPTFNPRTNTVLGSL-DDRVL 59

Query: 61  VEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVE 120
           +EKFCL KYKFSHGDV+VF SPS+HK+K +KRIIGLPGDW+GTP  NDV+K+P GHCWVE
Sbjct: 60  IEKFCLAKYKFSHGDVVVFRSPSDHKQKLIKRIIGLPGDWMGTPQ-NDVVKIPEGHCWVE 118

Query: 121 GDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIERKNHENILSPS 170
           GDNP+SS+DSRSFGPIPLGL++G  T I+WPPQR+  +ER+  ++  SPS
Sbjct: 119 GDNPASSMDSRSFGPIPLGLVQGRATTIVWPPQRICQVERRILQDRFSPS 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512387|gb|AFK44255.1| unknown [Lotus japonicus]

 Score =  234 bits (597), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 131/170 (77%), Gaps = 1/170 (0%)

Query: 1   MAAQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVL 60
           M    FLW+FTK   TFGLI +T+SDRY ++VPVRG SMSPTFN  T S MG +SDD V 
Sbjct: 1   MGPSGFLWNFTKKFVTFGLISVTVSDRYMTVVPVRGGSMSPTFNPKTHSLMGGVSDDCVF 60

Query: 61  VEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVE 120
           VEKFCLQKYKFSHGDV+VF SP NHKE H+KRII LPG+WIG     DV+K+P GHCWVE
Sbjct: 61  VEKFCLQKYKFSHGDVMVFRSPLNHKETHIKRIIALPGEWIGAHHNYDVLKIPEGHCWVE 120

Query: 121 GDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIERKNHENILSPS 170
           GDN +SSL S+SFGPIPL LI+G VTH++WPPQR+  ++    E  LSPS
Sbjct: 121 GDNAASSLGSKSFGPIPLALIRGRVTHVVWPPQRIGAVKSTPPEG-LSPS 169

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116794380|gb|ABK27122.1| unknown [Picea sitchensis]

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 104/161 (64%), Positives = 124/161 (77%)

Query: 1   MAAQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVL 60
           M A +FLW  +K   +  LIGLTISDRYASIV V+G SM PT N  + +  GSL  D+VL
Sbjct: 1   MGAWDFLWMLSKKSLSGALIGLTISDRYASIVAVQGRSMQPTLNPGSKNRFGSLKGDFVL 60

Query: 61  VEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVE 120
           +EKFCLQ YKFSHGDVIVF SP  H E HVKR+I LPGDWI  P T D++K+P GHCWVE
Sbjct: 61  LEKFCLQNYKFSHGDVIVFRSPYEHNEWHVKRLIALPGDWISVPGTYDILKIPEGHCWVE 120

Query: 121 GDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIERK 161
           GDN  SSLDSRSFGP+PLGL++G VTH++WPP+RV  IE++
Sbjct: 121 GDNAVSSLDSRSFGPVPLGLVQGRVTHVIWPPERVGAIEKQ 161

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481155|ref|XP_003610863.1| Mitochondrial inner membrane protease subunit [Medicago truncatula] gi|355512198|gb|AES93821.1| Mitochondrial inner membrane protease subunit [Medicago truncatula]

 Score =  218 bits (555), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 98/168 (58%), Positives = 126/168 (75%), Gaps = 4/168 (2%)

Query: 1   MAAQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVL 60
           M  +N +W+ TK   T GLI  T+SDRYA++VPVRG+SMSPTFN  T+SF    +DDYV 
Sbjct: 1   MGTRNLVWNVTKKLATIGLITFTVSDRYATVVPVRGASMSPTFNPKTNSF----TDDYVF 56

Query: 61  VEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVE 120
           VEK CL K+KFSHGD+++F SPSN KE H+KRII LPG+W       DV+KVP GHCWVE
Sbjct: 57  VEKLCLDKFKFSHGDIVIFSSPSNFKETHIKRIIALPGEWFVNRHNQDVLKVPEGHCWVE 116

Query: 121 GDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIERKNHENILS 168
           GDN +SS DS+S+GP+PLGL++G VTH++WPPQR+  ++    E + S
Sbjct: 117 GDNAASSTDSKSYGPVPLGLVRGRVTHVVWPPQRIGAVKNTTPERLPS 164

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727543|ref|NP_001238188.1| uncharacterized protein LOC100499932 [Glycine max] gi|255627785|gb|ACU14237.1| unknown [Glycine max]

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 96/159 (60%), Positives = 122/159 (76%)

Query: 1   MAAQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVL 60
           M   +FLW+ TK   + G++ +T++D + +++PVRG SMSPTFN    S MG + DDYVL
Sbjct: 1   MGTSSFLWNCTKKFISAGIVTVTVTDLFVTVIPVRGGSMSPTFNPKAGSLMGGVFDDYVL 60

Query: 61  VEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVE 120
           VEKFCL  YKFSHGDV+VF SP N KE HVKRI  LPG+W GT   NDV+++P GHCWVE
Sbjct: 61  VEKFCLHSYKFSHGDVVVFRSPQNRKETHVKRIAALPGEWFGTHQKNDVIQIPLGHCWVE 120

Query: 121 GDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIE 159
           GDN +SSLDS SFGPIPLG+I+G VTH++WPPQR+  ++
Sbjct: 121 GDNTASSLDSNSFGPIPLGIIRGRVTHVVWPPQRIGAVK 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722229|ref|NP_001235957.1| uncharacterized protein LOC100527429 [Glycine max] gi|255632322|gb|ACU16519.1| unknown [Glycine max]

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 122/159 (76%)

Query: 1   MAAQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVL 60
           M   +FLW+ TK   T G++ +T++D + +++PVRG SMSPTFN    S MG + DDYVL
Sbjct: 1   MGTSSFLWNCTKKFITAGIVTVTVTDHFVTVIPVRGGSMSPTFNPKAGSHMGDVFDDYVL 60

Query: 61  VEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVE 120
           VEKFCL+ YKFSHGDV+VF SP NHKE HVKRI  LPG+W G    NDV+++P GHCWVE
Sbjct: 61  VEKFCLRNYKFSHGDVVVFRSPLNHKETHVKRIAALPGEWFGAHHNNDVIQIPLGHCWVE 120

Query: 121 GDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIE 159
           GDN +SSLDS SFGPIPL LI+G VTH++WPPQR+  ++
Sbjct: 121 GDNTASSLDSNSFGPIPLALIRGRVTHVVWPPQRIGAVK 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829426|ref|XP_002882595.1| signal peptidase I family protein [Arabidopsis lyrata subsp. lyrata] gi|297328435|gb|EFH58854.1| signal peptidase I family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 97/158 (61%), Positives = 123/158 (77%), Gaps = 6/158 (3%)

Query: 1   MAAQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVL 60
           M  QN LW   K  FT  +IGLTISDR  S+VPVRG SMSPTFN   +S++    DDYVL
Sbjct: 1   MGIQNILWQVAKKSFTGSIIGLTISDRCCSVVPVRGDSMSPTFNPQRNSYL----DDYVL 56

Query: 61  VEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVE 120
           V+KFCL+ YKF+ GDV+VF SP+N  ++++KRI+G+PG+WI +  + DV++VP GHCWVE
Sbjct: 57  VDKFCLKDYKFARGDVVVFSSPTNFGDRYIKRIVGMPGEWISS--SRDVIRVPEGHCWVE 114

Query: 121 GDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHI 158
           GDN +SSLDSR+FGPIPLGLI+G VT +LWPPQR+  I
Sbjct: 115 GDNKTSSLDSRTFGPIPLGLIQGRVTRVLWPPQRISKI 152

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:2095249	154	AT3G08980 [Arabidopsis thalian	0.905	1.0	0.606	2.4e-51
MGI|MGI:2135611	175	Immp2l "IMP2 inner mitochondri	0.858	0.834	0.414	3.5e-27
ZFIN|ZDB-GENE-040808-9	184	immp2l "IMP2 inner mitochondri	0.888	0.820	0.382	3.5e-27
UNIPROTKB|Q96T52	175	IMMP2L "Mitochondrial inner me	0.888	0.862	0.394	9.4e-27
UNIPROTKB|Q2KI92	177	IMMP2L "Mitochondrial inner me	0.888	0.853	0.394	1.5e-26
UNIPROTKB|E1BVJ0	175	IMMP2L "Uncharacterized protei	0.888	0.862	0.382	2.9e-25
FB|FBgn0034535	171	CG11110 [Drosophila melanogast	0.8	0.795	0.363	1.3e-22
CGD|CAL0002703	162	IMP2 [Candida albicans (taxid:	0.688	0.722	0.432	2.1e-22
SGD|S000004638	177	IMP2 "Catalytic subunit of mit	0.758	0.728	0.419	2.1e-22
ZFIN|ZDB-GENE-070522-4	189	immp1l "IMP1 inner mitochondri	0.794	0.714	0.395	1.7e-20

TAIR|locus:2095249 AT3G08980 [Arabidopsis thaliana (taxid:3702)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 97/160 (60%), Positives = 124/160 (77%)

Query:     1 MAAQNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVL 60
             M  QN LW   K  FT  +IGLTISDR  S+VPVRG SMSPTFN   +S++    DDYVL
Sbjct:     1 MGIQNILWQVAKKSFTGSIIGLTISDRCCSVVPVRGDSMSPTFNPQRNSYL----DDYVL 56

Query:    61 VEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVE 120
             V+KFCL+ YKF+ GDV+VF SP++  ++++KRI+G+PG+WI +  + DV++VP GHCWVE
Sbjct:    57 VDKFCLKDYKFARGDVVVFSSPTHFGDRYIKRIVGMPGEWISS--SRDVIRVPEGHCWVE 114

Query:   121 GDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIER 160
             GDN +SSLDSRSFGPIPLGLI+G VT ++WPPQR+  I R
Sbjct:   115 GDNKTSSLDSRSFGPIPLGLIQGRVTRVMWPPQRISKIGR 154

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

MGI|MGI:2135611 Immp2l "IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 63/152 (41%), Positives = 89/152 (58%)

Query:     9 SFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQK 68
             +F K  F    + +T  DR A +  V GSSM P+ N       GS S D VL+  + ++ 
Sbjct:    14 AFCKGFFVAVPVAVTFLDRVACVARVEGSSMQPSLNPG-----GSQSSDVVLLNHWKVRN 68

Query:    69 YKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVMKVPNGHCWVEGDNPSSS 127
             ++   GD++   SP N ++K +KR+I L GD + T    N ++KVP GH WVEGD+   S
Sbjct:    69 FEVQRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRLVKVPRGHMWVEGDHHGHS 128

Query:   128 LDSRSFGPIPLGLIKGWVTHILWPPQRVRHIE 159
              DS SFGP+ LGL+    THILWPP+R + +E
Sbjct:   129 FDSNSFGPVSLGLLHAHATHILWPPERWQRLE 160

GO:0001541 "ovarian follicle development" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISA

GO:0006508 "proteolysis" evidence=IEA

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IGI

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008104 "protein localization" evidence=ISA

GO:0008152 "metabolic process" evidence=ISA;IMP

GO:0008233 "peptidase activity" evidence=IGI;ISA;IMP

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030728 "ovulation" evidence=IMP

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IGI

ZFIN|ZDB-GENE-040808-9 immp2l "IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 60/157 (38%), Positives = 93/157 (59%)

Query:     4 QNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEK 63
             + +  +F    F    + +T+ DR A +  V G+SM P+ N   D   G  S D VL+ +
Sbjct:     9 RRYFKAFVSGFFVAVPVTVTVLDRLAYVARVEGASMQPSLN--PD---GESSPDVVLLNR 63

Query:    64 FCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVMKVPNGHCWVEGD 122
             + ++ Y    GD++   SP N ++K +KR+IG+ GD+I T    N  ++VP+GH W+EGD
Sbjct:    64 WSVRNYHVQRGDIVSVLSPKNPQQKIIKRVIGIEGDFIKTLGYKNRYVRVPDGHLWIEGD 123

Query:   123 NPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIE 159
             +   S DS +FGP+ LGL+ G  +HI+WPP R + IE
Sbjct:   124 HHGHSFDSNAFGPVSLGLVHGRASHIIWPPSRWQRIE 160

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IEA

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q96T52 IMMP2L "Mitochondrial inner membrane protease subunit 2" [Homo sapiens (taxid:9606)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 62/157 (39%), Positives = 91/157 (57%)

Query:     4 QNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEK 63
             + ++ +F K  F    + +T  DR A +  V G+SM P+ N       GS S D VL+  
Sbjct:     9 KRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPG-----GSQSSDVVLLNH 63

Query:    64 FCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVMKVPNGHCWVEGD 122
             + ++ ++   GD++   SP N ++K +KR+I L GD + T    N  +KVP GH WVEGD
Sbjct:    64 WKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWVEGD 123

Query:   123 NPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIE 159
             +   S DS SFGP+ LGL+    THILWPP+R + +E
Sbjct:   124 HHGHSFDSNSFGPVSLGLLHAHATHILWPPERWQKLE 160

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0001541 "ovarian follicle development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030728 "ovulation" evidence=IEA

GO:0008233 "peptidase activity" evidence=ISS

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=ISS

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q2KI92 IMMP2L "Mitochondrial inner membrane protease subunit 2" [Bos taurus (taxid:9913)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 62/157 (39%), Positives = 90/157 (57%)

Query:     4 QNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEK 63
             + +  +F K  F    + +T  DR A +  V G+SM P+ N       GS S D VL+  
Sbjct:     9 RRYFKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPG-----GSQSSDVVLLNH 63

Query:    64 FCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTP-MTNDVMKVPNGHCWVEGD 122
             + ++ ++   GD++   SP N ++K +KR+I L GD + T    N  +KVP GH WVEGD
Sbjct:    64 WKVRNFEVQRGDIVSLVSPKNPEQKIIKRVIALEGDIVKTMGHKNRYVKVPRGHIWVEGD 123

Query:   123 NPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIE 159
             +   S DS SFGP+ LGL+    THILWPP+R + +E
Sbjct:   124 HHGHSFDSNSFGPVSLGLLHAHATHILWPPKRWQKLE 160

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA

GO:0030728 "ovulation" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001541 "ovarian follicle development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

UNIPROTKB|E1BVJ0 IMMP2L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 60/157 (38%), Positives = 89/157 (56%)

Query:     4 QNFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEK 63
             + +L +F K  F    + +T  DR A +  V G+SM P+ N       G  + D VL+  
Sbjct:     9 RRYLKAFFKGFFVAVPVTVTFLDRVACVARVEGASMQPSLNPG-----GRQASDVVLLNH 63

Query:    64 FCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVMKVPNGHCWVEGD 122
             + ++ Y    GD++   SP N ++K +KR+I L GD I T       +KVP+GH WVEGD
Sbjct:    64 WSIRNYDVQRGDIVSLVSPRNPEQKIIKRVIALEGDIIKTIGYKKKYVKVPHGHIWVEGD 123

Query:   123 NPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIE 159
             +   S DS +FGP+ LGL+    THILWPP+R + ++
Sbjct:   124 HHGHSFDSNAFGPVSLGLLHARATHILWPPKRWQKLQ 160

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0001541 "ovarian follicle development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030728 "ovulation" evidence=IEA

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA

FB|FBgn0034535 CG11110 [Drosophila melanogaster (taxid:7227)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 52/143 (36%), Positives = 80/143 (55%)

Query:    20 IGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVF 79
             +G+T  D    +  V G SM P  N   D        DYV + ++     +   GD+I  
Sbjct:    16 LGVTFLDCVGYVARVDGISMQPALNPVPDE------KDYVFLLRWGTHNSQVERGDIISL 69

Query:    80 CSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPL 138
              SP +  +K +KR++GL GD + T    +++++VP GHCWVEGD+   S+DS +FGP+ L
Sbjct:    70 ISPKDPAQKIIKRVVGLQGDVVSTLGYKHEIVRVPEGHCWVEGDHTGHSMDSNTFGPVAL 129

Query:   139 GLIKGWVTHILWPPQRVRHIERK 161
             GL+      I+WPP+R R +E +
Sbjct:   130 GLMSARAVAIVWPPERWRILENE 152

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

CGD|CAL0002703 IMP2 [Candida albicans (taxid:5476)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 54/125 (43%), Positives = 76/125 (60%)

Query:    34 VRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKY-KFSHGDVIVFCSPSNHKEKHVKR 92
             + GSSM+PTFN  T +    ++ D VLV+K+ ++K    S GD+I+F SP N ++   KR
Sbjct:    33 ITGSSMTPTFNPGTST----MTKDIVLVQKYNIKKPGSLSRGDIIMFRSPENPEKLLTKR 88

Query:    93 IIGLPGDWI---GTPMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHIL 149
             ++G+ GD I     P     +K+P  H WVEGDN   S+DS  FGP+  GL+ G V  I+
Sbjct:    89 VVGIQGDIIRPKSPPYPKSEVKIPRNHFWVEGDNSFHSIDSNKFGPVSQGLVIGKVVTII 148

Query:   150 WPPQR 154
             WPP R
Sbjct:   149 WPPSR 153

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IEA

SGD|S000004638 IMP2 "Catalytic subunit of mitochondrial inner membrane peptidase complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 57/136 (41%), Positives = 82/136 (60%)

Query:    22 LTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQK-YKFSHGDVIVFC 80
             LTI++    I  V+G+SM PT N  T++    L+ D+VL+ KF ++     S  D+I+F 
Sbjct:    25 LTINNNVVHIAQVKGTSMQPTLNPQTET----LATDWVLLWKFGVKNPSNLSRDDIILFK 80

Query:    81 SPSNHKEKHVKRIIGLPGDWIGT--PMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPL 138
             +P+N ++ + KR+ GLP D I T  P     + +P GH WVEGDN   S+DS +FGPI  
Sbjct:    81 APTNPRKVYCKRVKGLPFDTIDTKFPYPKPQVNLPRGHIWVEGDNYFHSIDSNTFGPISS 140

Query:   139 GLIKGWVTHILWPPQR 154
             GL+ G    I+WPP R
Sbjct:   141 GLVIGKAITIVWPPSR 156

GO:0004175 "endopeptidase activity" evidence=IMP;IDA

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA;IPI

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IEA;IMP

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-070522-4 immp1l "IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 59/149 (39%), Positives = 74/149 (49%)

Query:     9 SFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQK 68
             SF      +G I     +     V   G SM PT            + D V  E+     
Sbjct:    36 SFVGYTVQYGCIAHCAFEYVGEFVSCSGPSMEPTIT----------NHDVVFSERISRHL 85

Query:    69 YKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMK----VPNGHCWVEGDNP 124
             Y+   GD+I+  SPSN K    KR+IGL GD + T   +D+ K    VP GH W+EGDN 
Sbjct:    86 YRIQKGDIIIAKSPSNPKMNICKRVIGLEGDKVCTSGPSDIFKTHTYVPRGHVWLEGDNL 145

Query:   125 SSSLDSRSFGPIPLGLIKGWVTHILWPPQ 153
              +S DSRS+GPIP  LI+G V   LWPPQ
Sbjct:   146 RNSTDSRSYGPIPYALIRGRVCLKLWPPQ 174

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BPT6	IMP2L_MOUSE	3, ., 4, ., 2, 1, ., -	0.4050	0.8941	0.8685	yes	no
Q6AZD4	IMP2L_DANRE	3, ., 4, ., 2, 1, ., -	0.3734	0.8941	0.8306	yes	no
Q2KI92	IMP2L_BOVIN	3, ., 4, ., 2, 1, ., -	0.3924	0.8941	0.8587	yes	no
Q96T52	IMP2L_HUMAN	3, ., 4, ., 2, 1, ., -	0.3949	0.8882	0.8628	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691
3rd Layer	3.4.21.89	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	170
TIGR02227	163	TIGR02227, sigpep_I_bact, signal peptidase I, bact	8e-24
cd06530	85	cd06530, S26_SPase_I, The S26 Type I signal peptid	3e-22
cd06462	84	cd06462, Peptidase_S24_S26, The S24, S26 LexA/sign	2e-15
pfam00717	69	pfam00717, Peptidase_S24, Peptidase S24-like	1e-08
TIGR02754	90	TIGR02754, sod_Ni_protease, nickel-type superoxide	7e-08
COG0681	166	COG0681, LepB, Signal peptidase I [Intracellular t	4e-06
PRK10861	324	PRK10861, PRK10861, signal peptidase I; Provisiona	6e-05
pfam10502	138	pfam10502, Peptidase_S26, Signal peptidase, peptid	7e-05

>gnl|CDD|233790 TIGR02227, sigpep_I_bact, signal peptidase I, bacterial type

 Score = 91.2 bits (227), Expect = 8e-24
 Identities = 47/152 (30%), Positives = 64/152 (42%), Gaps = 39/152 (25%)

Query: 29  ASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEK 88
                V G SM PT              D +LV KF         GD++VF  P ++K  
Sbjct: 20  FFPYKVPGGSMEPTLK----------EGDRILVNKFAYGTSDPKRGDIVVFKDPDDNKNI 69

Query: 89  HVKRIIGLPGDWI---------------------------GTPMTNDV--MKVPNGHCWV 119
           ++KR+IGLPGD +                               T D   + VP GH +V
Sbjct: 70  YIKRVIGLPGDKVEFRDGKLYINGKKIDEPYLKPNGFLDTSEFNTTDYGPVTVPPGHYFV 129

Query: 120 EGDNPSSSLDSRSFGPIPLGLIKGWVTHILWP 151
            GDN  +SLDSR FG +P+  I G V+ + +P
Sbjct: 130 LGDNRDNSLDSRYFGFVPIDDIIGKVSFVFYP 161

This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes [Protein fate, Protein and peptide secretion and trafficking]. Length = 163

>gnl|CDD|119398 cd06530, S26_SPase_I, The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3

 Score = 84.6 bits (210), Expect = 3e-22
 Identities = 38/116 (32%), Positives = 49/116 (42%), Gaps = 31/116 (26%)

Query: 30  SIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKH 89
             V V G SM PT              D VLV K      +   GDV+VF SP +  +  
Sbjct: 1   EPVVVPGGSMEPTLQ----------PGDLVLVNKLSYGFREPKRGDVVVFKSPGDPGKPI 50

Query: 90  VKRIIGLPGDWIGTPMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWV 145
           +KR+IG                      +V GDN ++SLDSR +GP+P   I G V
Sbjct: 51  IKRVIG---------------------YFVLGDNRNNSLDSRYWGPVPEDDIVGKV 85

4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa) belong to this family and they process many proteins that enter the ER for retention or for export to the Golgi apparatus, secretory vesicles, plasma membranes or vacuole. An atypical member of the S26 SPase type I family is the TraF peptidase which has the remarkable activity of producing a cyclic protein of the Pseudomonas pilin system. The type I signal peptidases are unique serine proteases that utilize a serine/lysine catalytic dyad mechanism in place of the classical serine/histidine/aspartic acid catalytic triad mechanism. Length = 85

>gnl|CDD|119396 cd06462, Peptidase_S24_S26, The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families

 Score = 67.3 bits (165), Expect = 2e-15
 Identities = 41/114 (35%), Positives = 51/114 (44%), Gaps = 32/114 (28%)

Query: 30  SIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKH 89
             + V G SM PT              D VLV+K     Y+   GD++VF  P    E  
Sbjct: 1   FALRVEGDSMEPTIP----------DGDLVLVDK---SSYEPKRGDIVVFRLPGG--ELT 45

Query: 90  VKRIIGLPGDWIGTPMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKG 143
           VKR+IGLPG+               GH ++ GDNP +S DSR  GP P   I G
Sbjct: 46  VKRVIGLPGE---------------GHYFLLGDNP-NSPDSRIDGP-PELDIVG 82

The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the transport of proteins across membranes in all living organisms. All members in this superfamily are unique serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. Length = 84

>gnl|CDD|216079 pfam00717, Peptidase_S24, Peptidase S24-like

 Score = 48.8 bits (117), Expect = 1e-08
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 16/68 (23%)

Query: 34  VRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRI 93
           V+G SM PT              D +LV+K      +   GD++V     + +E  VKR+
Sbjct: 2   VKGDSMEPTIP----------DGDLLLVDKTS----EPKRGDIVVA--RLDGEEATVKRL 45

Query: 94  IGLPGDWI 101
           IGLPGD I
Sbjct: 46  IGLPGDII 53

Length = 69

>gnl|CDD|233997 TIGR02754, sod_Ni_protease, nickel-type superoxide dismutase maturation protease

 Score = 47.5 bits (113), Expect = 7e-08
 Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 26/113 (23%)

Query: 34  VRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRI 93
           V G SMSPT              D ++V  +         G+V+V   P       +KR+
Sbjct: 3   VTGVSMSPTLP----------PGDRIIVVPWLKIFRVPPIGNVVVVRHPLQPYGLIIKRL 52

Query: 94  IGLPGDWIGTPMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVT 146
                             V +   ++ GDNP +S DSR  GP+P  L+ G V 
Sbjct: 53  AA----------------VDDNGLFLLGDNPKASTDSRQLGPVPRSLLLGKVL 89

Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad [Cellular processes, Detoxification, Protein fate, Protein modification and repair]. Length = 90

>gnl|CDD|223753 COG0681, LepB, Signal peptidase I [Intracellular trafficking and secretion]

 Score = 44.2 bits (104), Expect = 4e-06
 Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 23/134 (17%)

Query: 7   LWSFTKNCFTFG---LIGLTISDR--YASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLV 61
           L  F +   +     ++ L I  R      V V   SM PT N      +G    D VLV
Sbjct: 4   LLKFLELISSLLIAIILALIIGVRTFVFEPVVVPSGSMEPTLN------VG----DRVLV 53

Query: 62  EKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTND----VMKVPNGHC 117
           +KF     K    D+IV   P+  +   +KR+IGL GD +     +D    V  +P  + 
Sbjct: 54  KKFSYGFGKLKVPDIIVL--PAVVEGDLIKRVIGLRGDIV--VFKDDRLYVVPIIPRVYG 109

Query: 118 WVEGDNPSSSLDSR 131
            VE DN    +D  
Sbjct: 110 LVEKDNGKHLVDVI 123

Length = 166

>gnl|CDD|182787 PRK10861, PRK10861, signal peptidase I; Provisional

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 22/76 (28%)

Query: 38  SMSPTFNLTTDSFMGSLSDDYVLVEKFCL-------QK--YKFSH---GDVIVFCSPSNH 85
           SM PT           L  D++LVEKF         Q    +  H   GD++VF  P + 
Sbjct: 91  SMMPTL----------LIGDFILVEKFAYGIKDPITQTTLIETGHPKRGDIVVFKYPEDP 140

Query: 86  KEKHVKRIIGLPGDWI 101
           K  ++KR++GLPGD +
Sbjct: 141 KLDYIKRVVGLPGDKV 156

Length = 324

>gnl|CDD|151062 pfam10502, Peptidase_S26, Signal peptidase, peptidase S26

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 23/117 (19%), Positives = 35/117 (29%), Gaps = 38/117 (32%)

Query: 72  SHGDVIVFCSPS------------NHKEKHVKRIIGLPGD--------------WIGTPM 105
             GD++  C P                   +KR++ LPG                +   +
Sbjct: 23  EVGDLVAVCPPEPAAFFAAERGYLPRGVPLLKRVLALPGQRVCIRDGLVTIDGVPVSAAL 82

Query: 106 TNDVM-----------KVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWP 151
             D              +P G  ++       S DSR FGP+P   I G     +W 
Sbjct: 83  ERDRKGRPLPPWQGCRVLPEGELFLMSVTSPDSFDSRYFGPVPASAIIG-RARPVWT 138

This is a family of membrane signal serine endopeptidases which function in the processing of newly-synthesised secreted proteins. Peptidase S26 removes the hydrophobic, N-terminal, signal peptides as proteins are translocated across membranes. The active site residues take the form of a catalytic dyad that is Ser, Lys in subfamily S26A; the Ser is the nucleophile in catalysis, and the Lys is the general base. Length = 138

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
TIGR02227	163	sigpep_I_bact signal peptidase I, bacterial type.	100.0
KOG0171	176	consensus Mitochondrial inner membrane protease, s	100.0
KOG1568	174	consensus Mitochondrial inner membrane protease, s	100.0
PRK10861	324	signal peptidase I; Provisional	100.0
PRK13838	176	conjugal transfer pilin processing protease TraF;	99.91
TIGR02771	171	TraF_Ti conjugative transfer signal peptidase TraF	99.88
PRK13884	178	conjugal transfer peptidase TraF; Provisional	99.87
TIGR02754	90	sod_Ni_protease nickel-type superoxide dismutase m	99.86
PF10502	138	Peptidase_S26: Signal peptidase, peptidase S26 ; I	99.85
cd06530	85	S26_SPase_I The S26 Type I signal peptidase (SPase	99.84
TIGR02228	158	sigpep_I_arch signal peptidase I, archaeal type. T	99.77
COG0681	166	LepB Signal peptidase I [Intracellular trafficking	99.64
COG4959	173	TraF Type IV secretory pathway, protease TraF [Pos	99.43
PF00717	70	Peptidase_S24: Peptidase S24-like peptidase classi	99.24
cd06462	84	Peptidase_S24_S26 The S24, S26 LexA/signal peptida	99.24
KOG3342	180	consensus Signal peptidase I [Intracellular traffi	98.9
cd06529	81	S24_LexA-like Peptidase S24 LexA-like proteins are	98.88
COG2932	214	Predicted transcriptional regulator [Transcription	98.79
PRK10276	139	DNA polymerase V subunit UmuD; Provisional	98.66
TIGR00498	199	lexA SOS regulatory protein LexA. LexA acts as a h	98.56
PRK00215	205	LexA repressor; Validated	98.5
PRK12423	202	LexA repressor; Provisional	98.41
COG1974	201	LexA SOS-response transcriptional repressors (RecA	97.95
TIGR02594	129	conserved hypothetical protein TIGR02594. Members	86.72
PRK00364	95	groES co-chaperonin GroES; Reviewed	82.95
cd00320	93	cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); C	80.28

>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type

Probab=100.00  E-value=4.6e-38  Score=243.94  Aligned_cols=133  Identities=36%  Similarity=0.532  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHHheeeEEEEEcCCCccccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceE
Q 030852           11 TKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHV   90 (170)
Q Consensus        11 ~~~~~~~~~v~~~i~~~~~~~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~v   90 (170)
                      +..++++++++++++.++++.+.|+|+||+|||+.          ||+++++|+.+...++++||+|+|+.|.++++.++
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~v~g~SM~Ptl~~----------Gd~vlv~k~~~~~~~~~rGDiVvf~~~~~~~~~~i   71 (163)
T TIGR02227         2 ILSLLIAILLALLIRTFVFFPYKIPGGSMEPTLKE----------GDRILVNKFAYGTSDPKRGDIVVFKDPDDNKNIYV   71 (163)
T ss_pred             HHHHHHHHHHHHHHHhhEEEEEEECCcccccchhC----------CCEEEEEEeEcCCCCCCCCcEEEEecCCCCCceeE
Confidence            45566677778899999999999999999999999          99999999876667999999999999987788999


Q ss_pred             EEEEeeCCCeEEecCC-----------------------------CCeEEecCCeEEEeeCCCCCCCCCCccccccCCCE
Q 030852           91 KRIIGLPGDWIGTPMT-----------------------------NDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLI  141 (170)
Q Consensus        91 KRVia~~Gd~v~i~~~-----------------------------~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~I  141 (170)
                      |||+|+|||+|.++++                             ..+.+||+|||||+|||+++|.|||+||+|++++|
T Consensus        72 KRVig~pGd~v~i~~~~l~vNg~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~g~~fvlGDnr~~S~DSR~~G~V~~~~I  151 (163)
T TIGR02227        72 KRVIGLPGDKVEFRDGKLYINGKKIDEPYLKPNGSLDTSGFNTTDFKPVTVPPGHYFVLGDNRDNSLDSRYFGFVPIDDI  151 (163)
T ss_pred             EEEEecCCCEEEEECCEEEECCEECcccccccccccccccccccccCceEECCCCEEEECCCCCCCcccCCcCcCCHHHe
Confidence            9999999999998541                             12358999999999999999999999999999999


Q ss_pred             EEEEEEEEeCCC
Q 030852          142 KGWVTHILWPPQ  153 (170)
Q Consensus       142 iGkv~~~~~p~~  153 (170)
                      +|||.+++||++
T Consensus       152 ~Gk~~~~~~p~~  163 (163)
T TIGR02227       152 IGKVSFVFYPFD  163 (163)
T ss_pred             EEEEEEEECCCC
Confidence            999999999985

A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.

>KOG0171 consensus Mitochondrial inner membrane protease, subunit IMP1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.7e-36  Score=228.97  Aligned_cols=140  Identities=35%  Similarity=0.617  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHHHheeeEEEEEcCCCccccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEE
Q 030852           12 KNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVK   91 (170)
Q Consensus        12 ~~~~~~~~v~~~i~~~~~~~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vK   91 (170)
                      .....-.++++....|++++...+|.||+||++++         ||+++..|+.+.++.+++||||++.+|.++++.+||
T Consensus        16 ~~~~~~~~f~h~t~~yl~e~~~~~gpSM~PTl~~~---------gd~l~aEkls~~f~~~~~gDIVi~~sP~~~~~~~cK   86 (176)
T KOG0171|consen   16 CSEIAYAAFTHVTHEYLGEFVMCSGPSMEPTLHDG---------GDVLLAEKLSYRFRKPQVGDIVIAKSPPDPKEHICK   86 (176)
T ss_pred             HHHHHHHHHHHHHHHHhcceeeccCCCcCceecCC---------CcEEehhhhhHhhcCCCCCCEEEEeCCCCchhhhhh
Confidence            33444455566777799999999999999999996         899988999999999999999999999999999999


Q ss_pred             EEEeeCCCeEEecCC-----------CCeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEeCCCCccccCc
Q 030852           92 RIIGLPGDWIGTPMT-----------NDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIER  160 (170)
Q Consensus        92 RVia~~Gd~v~i~~~-----------~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~p~~~~~~~~~  160 (170)
                      ||+|+|||.+.+...           ..++.||+||+||+|||.++|.|||+|||+|.+.|+||+.+++||.+++..+.-
T Consensus        87 RIva~eGD~v~v~~~~~~~n~~~e~~~~~i~VP~GhVfv~GDN~~nS~DSr~yGplP~glI~gRvv~r~Wp~s~~~~~~~  166 (176)
T KOG0171|consen   87 RIVAMEGDLVEVHDGPLVVNDLVEKFSTPIRVPEGHVFVEGDNRNNSLDSRNYGPLPMGLIQGRVVFRIWPPSRVSGLIL  166 (176)
T ss_pred             eeeccCCceEEEecCCcccchhhhhccceeeccCceEEEecCCCCCcccccccCCCchhheeeeEEEEecCchhcceeee
Confidence            999999998777542           234799999999999999999999999999999999999999999999876543

>KOG1568 consensus Mitochondrial inner membrane protease, subunit IMP2 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.8e-36  Score=228.56  Aligned_cols=162  Identities=37%  Similarity=0.621  Sum_probs=140.5

Q ss_pred             hhHHHHHHHHHHHHHHH--HHHHHHheeeEEEEEcCCCccccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEe
Q 030852            3 AQNFLWSFTKNCFTFGL--IGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFC   80 (170)
Q Consensus         3 ~~~~~~~~~~~~~~~~~--v~~~i~~~~~~~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~   80 (170)
                      .+..++.|.+.++.++.  +.+.+...++....|.|.||.|++++.+...    ..|+|+++|+........+||+|+|.
T Consensus         3 ~~~~~~~~~ksl~~s~~~~v~~t~~DrV~~va~v~G~smqPtlnP~~~~~----~~d~Vll~k~~v~n~~~~rGDiVvl~   78 (174)
T KOG1568|consen    3 RRYIFKVFEKSLTGSLKWHVLLTFSDRVVHVAQVYGSSMQPTLNPTMNTN----EKDTVLLRKWNVKNRKVSRGDIVVLK   78 (174)
T ss_pred             HHHHHHHHHhceeeeeeeheeeeeeeeEEEEeEEecCcCCCccCCCcccc----cccEEEEEeeccccceeccCCEEEEe
Confidence            34455566666666655  5677888899999999999999999964333    24999999998665568899999999


Q ss_pred             cCCCCCcceEEEEEeeCCCeEEe-cCCCCeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEeCCCCccccC
Q 030852           81 SPSNHKEKHVKRIIGLPGDWIGT-PMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVRHIE  159 (170)
Q Consensus        81 ~p~~~~~~~vKRVia~~Gd~v~i-~~~~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~p~~~~~~~~  159 (170)
                      +|+++++.+||||+|+|||++.. .+.+..+.+|+|||||+|||...|+|||.||||+.+.|+|+|++++||+.||++++
T Consensus        79 sP~~p~~~~iKRv~alegd~~~t~~~k~~~v~vpkghcWVegDn~~hs~DSntFGPVS~gli~grai~ilwpP~R~~~~~  158 (174)
T KOG1568|consen   79 SPNDPDKVIIKRVAALEGDIMVTEDEKEEPVVVPKGHCWVEGDNQKHSYDSNTFGPVSTGLIVGRAIYILWPPVRWQRLD  158 (174)
T ss_pred             CCCChhheeeeeeecccccEeccCCCCCCceecCCCcEEEecCCcccccccCccCCcchhheeeeEEEEEcChHHhhhhc
Confidence            99999999999999999999886 44678899999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCC
Q 030852          160 RKNHENILS  168 (170)
Q Consensus       160 ~~~~~~~~~  168 (170)
                      +..|.-|++
T Consensus       159 ~~~~~~~~~  167 (174)
T KOG1568|consen  159 KESPGRRVP  167 (174)
T ss_pred             ccCCccccc
Confidence            988877764

>PRK10861 signal peptidase I; Provisional

Probab=100.00  E-value=6.6e-34  Score=241.18  Aligned_cols=140  Identities=29%  Similarity=0.414  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHheeeEEEEEcCCCccccccCCCcCCCCCCCCcEEEEEceeccC------------CCCc
Q 030852            5 NFLWSFTKNCFTFGLIGLTISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQK------------YKFS   72 (170)
Q Consensus         5 ~~~~~~~~~~~~~~~v~~~i~~~~~~~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~------------~~~~   72 (170)
                      ..+..+++.++.+++++++++.|+++++.|+|+||+|||+.          ||+++++|+.+..            ..++
T Consensus        58 ~~~~~~~~~~~~~l~i~~~ir~fv~~~~~Ips~SM~PTL~~----------GD~IlVnK~~yg~~~p~~~~~~~~~~~p~  127 (324)
T PRK10861         58 PGWLETGASVFPVLAIVLIVRSFIYEPFQIPSGSMMPTLLI----------GDFILVEKFAYGIKDPITQTTLIETGHPK  127 (324)
T ss_pred             chHHHHHHHHHHHHhHHHHHHhhEEEEEEECCCcCcCcccC----------CCEEEEEEeecCccCccccccccccCCCC
Confidence            34677778888888889999999999999999999999999          9999999998752            5789


Q ss_pred             cccEEEEecCCCCCcceEEEEEeeCCCeEEec--------CC--------------------------------------
Q 030852           73 HGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTP--------MT--------------------------------------  106 (170)
Q Consensus        73 ~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~--------~~--------------------------------------  106 (170)
                      |||||+|+.|.++++.+||||+|+|||+|.++        +.                                      
T Consensus       128 RGDIVVF~~P~~~~~~yIKRVIGlPGD~I~~~~~~~~l~iNg~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  207 (324)
T PRK10861        128 RGDIVVFKYPEDPKLDYIKRVVGLPGDKVTYDPVSKEVTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATS  207 (324)
T ss_pred             CCCEEEEecCCCCCCcEEEEeeecCCcEEEEEeCCCEEEEcCcccccccccccccccccccccccccccccccccccccc
Confidence            99999999999888999999999999999984        10                                      


Q ss_pred             -----------------------------------C----------------CeEEecCCeEEEeeCCCCCCCCCCcccc
Q 030852          107 -----------------------------------N----------------DVMKVPNGHCWVEGDNPSSSLDSRSFGP  135 (170)
Q Consensus       107 -----------------------------------~----------------~~~~vp~~~~~v~Gdn~~~s~DSR~~G~  135 (170)
                                                         .                ..++||+|+||++|||+++|.||||||+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~E~l~~~~h~i~~~~~~~~~~~~~~~~~~~~~~~~~vp~g~yf~mgdnr~~S~DSRy~G~  287 (324)
T PRK10861        208 GFFQVPLNETKENGIRLSERKETLGDVTHRILTVPGAQDQVGMYYQQPGQPLATWVVPPGQYFMMGDNRDNSADSRYWGF  287 (324)
T ss_pred             ccccccccccccccccceeEEEecCCccceeeecCCcccccccccccCCCcCceEEECCCeEEEeCCCCCCCcccCcccc
Confidence                                               0                1238999999999999999999999999


Q ss_pred             ccCCCEEEEEEEEEeCCCC
Q 030852          136 IPLGLIKGWVTHILWPPQR  154 (170)
Q Consensus       136 V~~~~IiGkv~~~~~p~~~  154 (170)
                      ||.++|+|+|.+++|++++
T Consensus       288 Vp~~~i~G~a~~i~~s~d~  306 (324)
T PRK10861        288 VPEANLVGKATAIWMSFEK  306 (324)
T ss_pred             cCHHHcEEEEEEEEEEcCC
Confidence            9999999999999999874

>PRK13838 conjugal transfer pilin processing protease TraF; Provisional

Probab=99.91  E-value=3.2e-23  Score=162.89  Aligned_cols=92  Identities=23%  Similarity=0.374  Sum_probs=73.3

Q ss_pred             cEEEEEceeccCCCCccccEEEEecCCCC-------------------CcceEEEEEeeCCCeEEecCC-----------
Q 030852           57 DYVLVEKFCLQKYKFSHGDVIVFCSPSNH-------------------KEKHVKRIIGLPGDWIGTPMT-----------  106 (170)
Q Consensus        57 d~vlv~k~~~~~~~~~~GDiV~f~~p~~~-------------------~~~~vKRVia~~Gd~v~i~~~-----------  106 (170)
                      +.+.+.++.+...++++||+|+|+.|.++                   ...++|||+|+|||+|.+.+.           
T Consensus        37 ~pig~y~~~~~~~~~~rGDiVvf~~P~~~~~~~a~~r~yl~~g~~p~~~~~~iKRViglpGD~V~i~~~v~iNg~~~~~~  116 (176)
T PRK13838         37 EPLGLWRIEALDRPVAVGDLVFICPPETAAFREARERGYLRRGLCPGGFAPLIKTVAALAGQRVEIGGSVSIDGRPLPSS  116 (176)
T ss_pred             CEEEEEEEeccCCCCCCCcEEEEECCchhhhhhhhhcccccccccccCCCceEEEEEEeCCcEEEECCEEEECCEEcccc
Confidence            44445555443468999999999988643                   135999999999999998530           


Q ss_pred             --------------CCeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEE
Q 030852          107 --------------NDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHIL  149 (170)
Q Consensus       107 --------------~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~  149 (170)
                                    ....+||+|+|||+||| ++|+||||||+|++++|+|+|..++
T Consensus       117 ~~~~~~~~g~~l~~~~~~~vp~g~~fvlgd~-~~S~DSRy~G~V~~~~I~G~a~pi~  172 (176)
T PRK13838        117 SVRRRDGEGRPLTPFPGGVVPPGHLFLHSSF-AGSYDSRYFGPVPASGLLGLARPVL  172 (176)
T ss_pred             ccccccccCCcCCCCCccCcCCCeEEEECCC-CCCCcccccCcccHHHeEEEEEEEE
Confidence                          01347999999999998 5899999999999999999998664

>TIGR02771 TraF_Ti conjugative transfer signal peptidase TraF

Probab=99.88  E-value=4.3e-22  Score=155.86  Aligned_cols=80  Identities=35%  Similarity=0.628  Sum_probs=68.6

Q ss_pred             CCCccccEEEEecCCCCC-------------------cceEEEEEeeCCCeEEecCC-----------------------
Q 030852           69 YKFSHGDVIVFCSPSNHK-------------------EKHVKRIIGLPGDWIGTPMT-----------------------  106 (170)
Q Consensus        69 ~~~~~GDiV~f~~p~~~~-------------------~~~vKRVia~~Gd~v~i~~~-----------------------  106 (170)
                      .++++||+|+|+.|.++.                   ..++|||+|+|||+|+++++                       
T Consensus        45 ~~~~rGDiVvf~~p~~~~~~~~~~rg~l~~g~~p~~~~~~vKRViglpGD~V~i~~~~v~INg~~~~~~~~~~~~~~g~~  124 (171)
T TIGR02771        45 KPVERGDYVVFCPPDNPQFEEARERGYLREGLCPGGFGPLLKRVLGLPGDRVTVRADVVAINGQLLPYSKPLATDSSGRP  124 (171)
T ss_pred             CCCCCCcEEEEeCCCchhhhchhhcCcccccccCcCccceEEEEEEeCCCEEEEECCEEEECCEEcccccccccccCCCc
Confidence            389999999999986432                   27999999999999999541                       


Q ss_pred             ---CCeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEE
Q 030852          107 ---NDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHIL  149 (170)
Q Consensus       107 ---~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~  149 (170)
                         ..+.+||+| ||++|||+++|+||||||+|+.++|+|||...+
T Consensus       125 l~~~~~~~vp~g-yf~lgdn~~~S~DSRy~G~V~~~~IiGk~~pl~  169 (171)
T TIGR02771       125 LPPFPEGVIPPG-FFVVHDTSPTSFDSRYFGPISREQVIGRVKPLF  169 (171)
T ss_pred             cccCCCcEECCC-EEEECCCCCCCCcccccceecHHHeEEEEEEeE
Confidence               125789999 999999999999999999999999999998643

This protein is found in apparent operons encoding elements of conjugative transfer systems. This family is homologous to a broader family of signal (leader) peptidases such as lepB. This family is present in both Ti-type and I-type conjugative systems.

>PRK13884 conjugal transfer peptidase TraF; Provisional

Probab=99.87  E-value=3.1e-21  Score=151.88  Aligned_cols=81  Identities=22%  Similarity=0.414  Sum_probs=68.5

Q ss_pred             CCCccccEEEEecCCCC-------------------CcceEEEEEeeCCCeEEecCC-----------------------
Q 030852           69 YKFSHGDVIVFCSPSNH-------------------KEKHVKRIIGLPGDWIGTPMT-----------------------  106 (170)
Q Consensus        69 ~~~~~GDiV~f~~p~~~-------------------~~~~vKRVia~~Gd~v~i~~~-----------------------  106 (170)
                      .++++||+|+|+.|...                   ...++|||+|+|||+|.+.++                       
T Consensus        49 ~~~~~Gd~V~f~~p~~~~~~~a~~rgyl~~g~~p~~~~~liKRVva~pGD~V~~~~~~l~VNG~~v~~~~~~~~d~~g~~  128 (178)
T PRK13884         49 APVEKGAYVLFCPPQRGVFDDAKERGYIGAGFCPGGYGYMMKRVLAAKGDAVSVTDDGVRVNGELLPLSKPILADGAGRP  128 (178)
T ss_pred             CCCCCCCEEEEeCCchHHHHHHHhCCccccCcCCCCCCceEEEEEeeCCcEEEEECCEEEECCEEccccccccccccCCc
Confidence            38999999999987621                   137999999999999999541                       


Q ss_pred             -----CCeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEE
Q 030852          107 -----NDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHIL  149 (170)
Q Consensus       107 -----~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~  149 (170)
                           ...++||+|+||++|||+++|+||||||+|++++|+|+|..++
T Consensus       129 l~~~~~~~~~lp~g~~fvlgd~~~~S~DSRYfG~V~~~~I~G~~~Pl~  176 (178)
T PRK13884        129 LPRYQANSYTLGESELLLMSDVSATSFDGRYFGPINRSQIKTVIRPVI  176 (178)
T ss_pred             ccccCCCceEECCCEEEEECCCCCCCCcccccCcccHHHEEEEEEEeE
Confidence                 0124899999999999999999999999999999999997654

>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease

Probab=99.86  E-value=1.4e-21  Score=137.11  Aligned_cols=89  Identities=33%  Similarity=0.458  Sum_probs=78.6

Q ss_pred             EEEcCCCccccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCCCeEE
Q 030852           32 VPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMK  111 (170)
Q Consensus        32 ~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~~~~~  111 (170)
                      +.|.|+||+|+|.+          ||+|++++.......+++||+|+|+.|.++++.++||++++++             
T Consensus         1 ~~V~g~SM~P~l~~----------GD~vlv~~~~~~~~~~~~Gdivv~~~~~~~~~~~vkRv~~~~~-------------   57 (90)
T TIGR02754         1 AKVTGVSMSPTLPP----------GDRIIVVPWLKIFRVPPIGNVVVVRHPLQPYGLIIKRLAAVDD-------------   57 (90)
T ss_pred             CEeeCCCccCccCC----------CCEEEEEEccccCCCCCCCeEEEEecCCCCcceEEEEeeEEcC-------------
Confidence            36899999999999          9999999864433456789999999987677899999999865             


Q ss_pred             ecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEE
Q 030852          112 VPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVT  146 (170)
Q Consensus       112 vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~  146 (170)
                         +++|+.|||+..|.|||++|+|+..+|+|+|+
T Consensus        58 ---~~~~l~~dN~~~~~d~~~~g~v~~~~I~G~v~   89 (90)
T TIGR02754        58 ---NGLFLLGDNPKASTDSRQLGPVPRSLLLGKVL   89 (90)
T ss_pred             ---CeEEEeCCCCCCCCcccccCCCcHHHEEEEEE
Confidence               58999999999999999999999999999985

Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see Pfam model pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad.

>PF10502 Peptidase_S26: Signal peptidase, peptidase S26 ; InterPro: IPR019533 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.85  E-value=2.5e-22  Score=152.16  Aligned_cols=89  Identities=34%  Similarity=0.620  Sum_probs=32.4

Q ss_pred             cEEEEEceeccCCCCccccEEEEecCCC------------CCcceEEEEEeeCCCeEEecCC------------------
Q 030852           57 DYVLVEKFCLQKYKFSHGDVIVFCSPSN------------HKEKHVKRIIGLPGDWIGTPMT------------------  106 (170)
Q Consensus        57 d~vlv~k~~~~~~~~~~GDiV~f~~p~~------------~~~~~vKRVia~~Gd~v~i~~~------------------  106 (170)
                      -+.++.+..    .+++||+|+|+.|..            .+..++|||+|+|||+|.+++.                  
T Consensus        12 g~Y~~~~~~----~~~rGd~V~f~~p~~~~~~~~~~gy~~~~~~~iKrV~a~pGD~V~v~~~~v~iNG~~~~~~~~~d~~   87 (138)
T PF10502_consen   12 GIYLIDPSD----KIERGDLVVFCPPAEVAFFAAERGYLPEGQPLIKRVAAVPGDTVEVTDGGVYINGRPVGEPLATDSD   87 (138)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccc----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            334455444    589999999999862            3568999999999999999652                  


Q ss_pred             -------CCeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEE
Q 030852          107 -------NDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHIL  149 (170)
Q Consensus       107 -------~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~  149 (170)
                             ....+||+|+||++|||..+|+||||||+|+.++|+|+|..++
T Consensus        88 g~~l~~~~~~~~vp~g~~~v~gd~~~~S~DSRy~G~V~~~~I~g~~~pl~  137 (138)
T PF10502_consen   88 GRPLPQFSGSGTVPEGEYFVLGDNRPNSFDSRYFGPVPRSQIIGKARPLW  137 (138)
T ss_dssp             -S-T----TEEE--TTEEEEE-SBTTS--SHHHH--EEGGGEEEEEEEEE
T ss_pred             cccccccCCceEeCCCEEEEecCCCCCccccCEecccCHHHEEEEEEEEE
Confidence                   2468999999999999999999999999999999999998764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a conserved region found in the S26A family of serine endopeptidases, which function in the processing of newly-synthesised secreted proteins. Peptidase S26 removes the hydrophobic, N-terminal signal peptides as proteins are translocated across membranes. ; PDB: 3S04_B 1KN9_C 1B12_D 3IIQ_B 1T7D_A.

>cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3

Probab=99.84  E-value=1.9e-20  Score=129.74  Aligned_cols=84  Identities=45%  Similarity=0.653  Sum_probs=76.3

Q ss_pred             EEEEcCCCccccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCCCeE
Q 030852           31 IVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVM  110 (170)
Q Consensus        31 ~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~~~~  110 (170)
                      .+.+.|+||+|++..          ||++++++......++++||+|+|+.|..+++.++|||++               
T Consensus         2 ~~~v~g~SM~P~i~~----------gd~v~v~~~~~~~~~~~~GDiv~~~~~~~~~~~~vkRv~~---------------   56 (85)
T cd06530           2 PVVVPGGSMEPTLQP----------GDLVLVNKLSYGFREPKRGDVVVFKSPGDPGKPIIKRVIG---------------   56 (85)
T ss_pred             eeEEcCCCCcCcccC----------CCEEEEEEeecccCCCCCCCEEEEeCCCCCCCEEEEEEEE---------------
Confidence            578999999999999          9999999877433469999999999987657899999999               


Q ss_pred             EecCCeEEEeeCCCCCCCCCCccccccCCCEEEEE
Q 030852          111 KVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWV  145 (170)
Q Consensus       111 ~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv  145 (170)
                            ||+.|||.++|.|||+||+++.++|+|++
T Consensus        57 ------~~~~gDn~~ns~d~~~~g~~~~~~i~G~~   85 (85)
T cd06530          57 ------YFVLGDNRNNSLDSRYWGPVPEDDIVGKV   85 (85)
T ss_pred             ------EEEeeCCCCCCCccCCcCCCcHHHeEEeC
Confidence                  99999999999999999999999999985

4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa

>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type

Probab=99.77  E-value=5.9e-18  Score=130.97  Aligned_cols=85  Identities=29%  Similarity=0.340  Sum_probs=69.9

Q ss_pred             EEcCCCccccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCCCeEEe
Q 030852           33 PVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKV  112 (170)
Q Consensus        33 ~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~~~~~v  112 (170)
                      .|.|+||+||+++          ||++++++...  .++++||+|+|+.|.++ +.++|||+++.++.            
T Consensus        35 ~V~g~SM~Ptl~~----------GD~vlv~~~~~--~~~~~GDIVvf~~~~~~-~~iihRVi~v~~~~------------   89 (158)
T TIGR02228        35 VVLSGSMEPTFNT----------GDLILVTGADP--NDIQVGDVITYKSPGFN-TPVTHRVIEINNSG------------   89 (158)
T ss_pred             EEcCCCCcCCccC----------CCEEEEEeccc--CCCCCCCEEEEEECCCC-ccEEEEEEEEECCC------------
Confidence            3999999999999          99999998543  48999999999998643 78999999997641            


Q ss_pred             cCCeEEEeeCCCCCCCCCCccccccCCCEEEEEE
Q 030852          113 PNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVT  146 (170)
Q Consensus       113 p~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~  146 (170)
                      -+..+++.|||+ ...|   .++|+.++|+|++.
T Consensus        90 g~~~~~tkGDnN-~~~D---~~~v~~~~IiG~v~  119 (158)
T TIGR02228        90 GELGFITKGDNN-PAPD---GEPVPSENVIGKYL  119 (158)
T ss_pred             CcEEEEEEecCC-CCCC---cccCCHHHEEEEEE
Confidence            001488889997 4445   68999999999998

This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.

>COG0681 LepB Signal peptidase I [Intracellular trafficking and secretion]

Probab=99.64  E-value=3e-15  Score=114.51  Aligned_cols=127  Identities=29%  Similarity=0.288  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHHHHH--HheeeEEEEEcCCCccccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCC
Q 030852            7 LWSFTKNCFTFGLIGLTI--SDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSN   84 (170)
Q Consensus         7 ~~~~~~~~~~~~~v~~~i--~~~~~~~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~   84 (170)
                      ...++..++.++++++++  +.++++.+.|+|+||+||++.          ||+++++|+.+....+..++++  ..|..
T Consensus         7 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~V~s~SM~Ptl~~----------GD~v~v~k~~~~~~~~~~~~~~--~~~~~   74 (166)
T COG0681           7 FLELISSLLIAIILALIIGVRTFVFEPVVVPSGSMEPTLNV----------GDRVLVKKFSYGFGKLKVPDII--VLPAV   74 (166)
T ss_pred             HHHHHHHHHHHHHHhheeeeEEEEEEEEEECCCcccccccc----------CCEEEEEeccccccCCccceee--ecCCC
Confidence            447777888888888888  899999999999999999999          9999999999887788999888  55666


Q ss_pred             CCcceEEEEEeeCCCeEEecCCCCe--EEecCCeEEEeeCC-------CCCCCCCCccccccCCCEEEEE
Q 030852           85 HKEKHVKRIIGLPGDWIGTPMTNDV--MKVPNGHCWVEGDN-------PSSSLDSRSFGPIPLGLIKGWV  145 (170)
Q Consensus        85 ~~~~~vKRVia~~Gd~v~i~~~~~~--~~vp~~~~~v~Gdn-------~~~s~DSR~~G~V~~~~IiGkv  145 (170)
                      .+..++||+++.+||.+.+++...+  ..+|++..++.++|       ...+.+++.++.......+.++
T Consensus        75 ~~~~~~kr~~~~~GD~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (166)
T COG0681          75 VEGDLIKRVIGLRGDIVVFKDDRLYVVPIIPRVYGLVEKDNGKHLVDVIVNANSSRVFGIITKKDYIKRV  144 (166)
T ss_pred             CCcceEEEeccCCCCEEEEECCEEEeecccCcchhhhhcccccccccccccccCccccccccccccccce
Confidence            7889999999999999999875544  56667666666544       3467778888877788888777

>COG4959 TraF Type IV secretory pathway, protease TraF [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.43  E-value=3.6e-13  Score=102.81  Aligned_cols=86  Identities=28%  Similarity=0.487  Sum_probs=70.2

Q ss_pred             EEEceeccCCCCccccEEEEecCCC------------CCcceEEEEEeeCCCeEEecCC---------------------
Q 030852           60 LVEKFCLQKYKFSHGDVIVFCSPSN------------HKEKHVKRIIGLPGDWIGTPMT---------------------  106 (170)
Q Consensus        60 lv~k~~~~~~~~~~GDiV~f~~p~~------------~~~~~vKRVia~~Gd~v~i~~~---------------------  106 (170)
                      .++|..   .++++||+|+++.|..            ....++|||.|+|||+|.+..+                     
T Consensus        46 rv~k~~---~Pvt~g~lV~v~pP~~~a~~aA~RGYLp~~~pllK~i~Alpgq~Vci~~~~I~I~G~~v~~sl~~D~~GR~  122 (173)
T COG4959          46 RVSKLS---APVTKGDLVLVCPPQRAAFLAAQRGYLPPYIPLLKRILALPGQHVCITSQGIAIDGKPVAASLPVDRVGRA  122 (173)
T ss_pred             EecccC---CCcccCCEEEECCCchHhHhHhhcCccccccHHHHHHhcCCCCcEEEecceEEECCEEeeeeccccccCCc
Confidence            355544   3669999999999973            3568999999999999998431                     


Q ss_pred             ----CCeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEE
Q 030852          107 ----NDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHI  148 (170)
Q Consensus       107 ----~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~  148 (170)
                          ...-.+-++++++++|..+.|+|||||||||.++|+|.+..+
T Consensus       123 lp~~~gcR~l~~~el~lL~~~~~~SfDsRYfGpipas~vig~aRPv  168 (173)
T COG4959         123 LPRWQGCRYLAPSELLLLTDRSSTSFDSRYFGPIPASQVIGVARPV  168 (173)
T ss_pred             CCcccCCceecCCeEEEEeccCCcccccceecccCHHHcceeeeee
Confidence                122247789999999999999999999999999999999765

>PF00717 Peptidase_S24: Peptidase S24-like peptidase classification

Probab=99.24  E-value=2.7e-11  Score=80.39  Aligned_cols=57  Identities=35%  Similarity=0.514  Sum_probs=46.4

Q ss_pred             EEcCCCccccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEec
Q 030852           33 PVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTP  104 (170)
Q Consensus        33 ~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~  104 (170)
                      +|.|+||+|+++.          ||++++++..    .++.||+|++..+.+. ..++||+.+.+|+.+.+.
T Consensus         1 ~V~GdSM~P~i~~----------Gd~v~v~~~~----~~~~gdivv~~~~~~~-~~~iKrv~~~~~~~~~~~   57 (70)
T PF00717_consen    1 RVEGDSMEPTIKD----------GDIVLVDPSS----EPKDGDIVVVKIDGDE-ELYIKRVVGEPGGIILIS   57 (70)
T ss_dssp             EEESSTTGGTSST----------TEEEEEEETS-------TTSEEEEEETTEE-SEEEEEEEEETTEEEEE-
T ss_pred             CeECcCcccCeeC----------CCEEEEEEcC----CCccCeEEEEEECCce-eeEEEEEEEeCCCEEEEe
Confidence            5899999999999          9999999876    8999999999996422 389999999999877664

; InterPro: IPR019759 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ].; PDB: 1KCA_H 3BDN_A 1F39_A 1JHH_A 1JHE_B 3JSP_A 1JHF_B 1JHC_A 3JSO_B 1B12_D ....

>cd06462 Peptidase_S24_S26 The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families

Probab=99.24  E-value=6.5e-11  Score=80.45  Aligned_cols=83  Identities=51%  Similarity=0.756  Sum_probs=65.4

Q ss_pred             EEEEcCCCccccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCCCeE
Q 030852           31 IVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVM  110 (170)
Q Consensus        31 ~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~~~~  110 (170)
                      .+.+.|+||+|++..          ||++++++..   ..++.||+|+++.+.  +..++||+...++            
T Consensus         2 ~~~v~g~SM~P~i~~----------gd~v~i~~~~---~~~~~G~iv~~~~~~--~~~~ikrl~~~~~------------   54 (84)
T cd06462           2 ALRVEGDSMEPTIPD----------GDLVLVDKSS---YEPKRGDIVVFRLPG--GELTVKRVIGLPG------------   54 (84)
T ss_pred             eeEEcCCCccCcccC----------CCEEEEEecC---CCCcCCEEEEEEcCC--CcEEEEEEEEECC------------
Confidence            468999999999999          9999999866   248999999999953  4899999999876            


Q ss_pred             EecCCeEEEeeCCCCCCCCCCccccccCCCEEEEE
Q 030852          111 KVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWV  145 (170)
Q Consensus       111 ~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv  145 (170)
                         ++++++.+||. ++.+.+..+. ....++|++
T Consensus        55 ---~~~~~l~~~N~-~~~~~~~~~~-~~~~i~g~v   84 (84)
T cd06462          55 ---EGHYFLLGDNP-NSPDSRIDGP-PELDIVGVV   84 (84)
T ss_pred             ---CCEEEEECCCC-CCCcccccCC-CHHHEEEeC
Confidence               36899999994 5555544333 556677663

The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the tr

>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=1.7e-08  Score=77.24  Aligned_cols=88  Identities=28%  Similarity=0.380  Sum_probs=65.1

Q ss_pred             EEEEcCCCccccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCCCeE
Q 030852           31 IVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVM  110 (170)
Q Consensus        31 ~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~~~~  110 (170)
                      ++.|-++||||.++.          ||.+++.....  ...+.||||+|+.+. ..-.+++||+.+-+..          
T Consensus        50 iVVVLSgSMePaF~R----------GDlLfL~N~~~--~p~~vGdivVf~veg-R~IPiVHRviK~he~~----------  106 (180)
T KOG3342|consen   50 IVVVLSGSMEPAFHR----------GDLLFLTNRNE--DPIRVGDIVVFKVEG-REIPIVHRVIKQHEKS----------  106 (180)
T ss_pred             EEEEEcCCcCccccc----------ccEEEEecCCC--CcceeccEEEEEECC-ccCchhHHHHHHhccc----------
Confidence            478999999999999          99999875443  377899999999964 4667999999764310          


Q ss_pred             EecCC--eEEEeeCCCCCCCCCCc-c----ccccCCCEEEEEE
Q 030852          111 KVPNG--HCWVEGDNPSSSLDSRS-F----GPIPLGLIKGWVT  146 (170)
Q Consensus       111 ~vp~~--~~~v~Gdn~~~s~DSR~-~----G~V~~~~IiGkv~  146 (170)
                         +|  ++...|||+  ..|-|. |    --..+++|.|+|.
T Consensus       107 ---~~~~~~LTKGDNN--~~dD~~Ly~~gq~~L~r~~Ivg~~~  144 (180)
T KOG3342|consen  107 ---NGHIKFLTKGDNN--AVDDRGLYAQGQNWLERKDIVGRVR  144 (180)
T ss_pred             ---CCcEEEEecCCCC--cccchhcccccccceeccceeeEEe
Confidence               23  466779985  445553 1    1277899999985

>cd06529 S24_LexA-like Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell

Probab=98.88  E-value=1.8e-08  Score=68.26  Aligned_cols=61  Identities=34%  Similarity=0.413  Sum_probs=52.7

Q ss_pred             EEEEcCCCccccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCCCeE
Q 030852           31 IVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVM  110 (170)
Q Consensus        31 ~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~~~~  110 (170)
                      ...+.|+||+|+++.          ||++++++..    .++.||+++++.+   ++..+||+...+++           
T Consensus         2 ~~~v~g~sM~p~i~~----------gd~lii~~~~----~~~~g~i~~~~~~---~~~~ikr~~~~~~~-----------   53 (81)
T cd06529           2 ALRVKGDSMEPTIPD----------GDLVLVDPSD----TPRDGDIVVARLD---GELTVKRLQRRGGG-----------   53 (81)
T ss_pred             EEEEECCCcCCccCC----------CCEEEEcCCC----CCCCCCEEEEEEC---CEEEEEEEEECCCC-----------
Confidence            468999999999999          9999999866    6899999999994   47899999988753           


Q ss_pred             EecCCeEEEeeCCC
Q 030852          111 KVPNGHCWVEGDNP  124 (170)
Q Consensus       111 ~vp~~~~~v~Gdn~  124 (170)
                           .+++.++|.
T Consensus        54 -----~~~L~s~N~   62 (81)
T cd06529          54 -----RLRLISDNP   62 (81)
T ss_pred             -----cEEEEeCCC
Confidence                 778888885

This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the

>COG2932 Predicted transcriptional regulator [Transcription]

Probab=98.79  E-value=5.5e-08  Score=78.18  Aligned_cols=89  Identities=27%  Similarity=0.249  Sum_probs=64.7

Q ss_pred             EEEEEcCCCccccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCCCe
Q 030852           30 SIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDV  109 (170)
Q Consensus        30 ~~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~~~  109 (170)
                      ....|.|+||+|++++          ||+++|+.-.    ...+||.|++..-  .++.++||+...+|           
T Consensus       124 ~~i~V~GDSMeP~~~~----------Gd~ilVd~~~----~~~~gd~v~v~~~--g~~~~VK~l~~~~~-----------  176 (214)
T COG2932         124 FALRVTGDSMEPTYED----------GDTLLVDPGV----NTRRGDRVYVETD--GGELYVKKLQREPG-----------  176 (214)
T ss_pred             EEEEEeCCcccccccC----------CCEEEECCCC----ceeeCCEEEEEEe--CCeEEEEEEEEecC-----------
Confidence            4689999999999999          9999999876    6678996666652  46899999999877           


Q ss_pred             EEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEeC
Q 030852          110 MKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWP  151 (170)
Q Consensus       110 ~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~p  151 (170)
                           |.+.+.++|+....|-- +..=..=.|||+|++..-+
T Consensus       177 -----~~~~l~S~N~~~~~~~~-~~~~~~v~iIgrVv~~~~~  212 (214)
T COG2932         177 -----GLLRLVSLNPDYYPDEI-FSEDDDVEIIGRVVWVSRL  212 (214)
T ss_pred             -----CeEEEEeCCCCCCcccc-cCccceEEEEEEEEEEeee
Confidence                 46668899984432222 1111112489999876543

>PRK10276 DNA polymerase V subunit UmuD; Provisional

Probab=98.66  E-value=3.5e-07  Score=69.05  Aligned_cols=85  Identities=22%  Similarity=0.199  Sum_probs=60.1

Q ss_pred             eEEEEEcCCCcc-ccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCC
Q 030852           29 ASIVPVRGSSMS-PTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTN  107 (170)
Q Consensus        29 ~~~~~v~~~SM~-Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~  107 (170)
                      ....+|.|+||+ |++..          ||++++++-.    .++.||+|++..   +++..+||+...           
T Consensus        51 ~f~l~V~GdSM~~~~I~~----------GD~liVd~~~----~~~~Gdivv~~~---~g~~~vKrl~~~-----------  102 (139)
T PRK10276         51 TYFVKASGDSMIDAGISD----------GDLLIVDSAI----TASHGDIVIAAV---DGEFTVKKLQLR-----------  102 (139)
T ss_pred             EEEEEEecCCCCCCCCCC----------CCEEEEECCC----CCCCCCEEEEEE---CCEEEEEEEEEC-----------
Confidence            455899999997 68999          9999999754    678999999987   457789998742           


Q ss_pred             CeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEe
Q 030852          108 DVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILW  150 (170)
Q Consensus       108 ~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~  150 (170)
                             +++++..+|+..  .....-.-..-.|+|+|++.+-
T Consensus       103 -------~~~~L~s~N~~y--~~i~i~~~~~~~IiG~V~~~~~  136 (139)
T PRK10276        103 -------PTVQLIPMNSAY--SPITISSEDTLDVFGVVTHIVK  136 (139)
T ss_pred             -------CcEEEEcCCCCC--CCEEcCCCCcEEEEEEEEEEEE
Confidence                   246777777521  1111111112379999998764

>TIGR00498 lexA SOS regulatory protein LexA

Probab=98.56  E-value=1.1e-06  Score=69.67  Aligned_cols=88  Identities=20%  Similarity=0.189  Sum_probs=65.5

Q ss_pred             eeEEEEEcCCCcc-ccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCC
Q 030852           28 YASIVPVRGSSMS-PTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMT  106 (170)
Q Consensus        28 ~~~~~~v~~~SM~-Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~  106 (170)
                      -...+.|.|+||+ |.+..          ||++++++..    .++.||+|++..   +++..+||+.-. |        
T Consensus       110 ~~f~~~V~GdSM~~~~i~~----------Gd~v~v~~~~----~~~~G~ivvv~~---~~~~~vKrl~~~-~--------  163 (199)
T TIGR00498       110 AVFLLKVMGDSMVDAGICD----------GDLLIVRSQK----DARNGEIVAAMI---DGEVTVKRFYKD-G--------  163 (199)
T ss_pred             CEEEEEecCCCCCCCCCCC----------CCEEEEecCC----CCCCCCEEEEEE---CCEEEEEEEEEE-C--------
Confidence            4567899999996 57999          9999999754    889999999998   567899998754 3        


Q ss_pred             CCeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEeCC
Q 030852          107 NDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPP  152 (170)
Q Consensus       107 ~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~p~  152 (170)
                              +.+++..+|+..  ....... ..=.|+|+|+..+..+
T Consensus       164 --------~~i~L~s~N~~y--~~i~~~~-~~~~IiG~Vv~~~r~~  198 (199)
T TIGR00498       164 --------TKVELKPENPEF--DPIVLNA-EDVTILGKVVGVIRNF  198 (199)
T ss_pred             --------CEEEEEcCCCCC--cCCcCCC-CcEEEEEEEEEEEEec
Confidence                    478888888732  1111110 1348999999887643

LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.

>PRK00215 LexA repressor; Validated

Probab=98.50  E-value=1.7e-06  Score=68.88  Aligned_cols=86  Identities=29%  Similarity=0.339  Sum_probs=63.2

Q ss_pred             eeEEEEEcCCCcc-ccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCC
Q 030852           28 YASIVPVRGSSMS-PTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMT  106 (170)
Q Consensus        28 ~~~~~~v~~~SM~-Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~  106 (170)
                      -.....|.|+||+ |++.+          ||++++++-.    .++.||+|++...   ++..+||+.-. +        
T Consensus       117 ~~~~~~V~GdSM~~~~i~~----------Gd~v~v~~~~----~~~~G~ivv~~~~---~~~~vKrl~~~-~--------  170 (205)
T PRK00215        117 EDFLLRVRGDSMIDAGILD----------GDLVIVRKQQ----TARNGQIVVALID---DEATVKRFRRE-G--------  170 (205)
T ss_pred             CeEEEEEccCCCCCCCcCC----------CCEEEEeCCC----CCCCCCEEEEEEC---CEEEEEEEEEe-C--------
Confidence            3556889999995 79999          9999999744    6789999999883   47899999864 2        


Q ss_pred             CCeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEe
Q 030852          107 NDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILW  150 (170)
Q Consensus       107 ~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~  150 (170)
                              |.+++..+|+..  +.....+= .-.|+|+|+..+-
T Consensus       171 --------~~~~L~s~Np~y--~~~~~~~~-~~~IiG~Vv~~~r  203 (205)
T PRK00215        171 --------GHIRLEPENPAY--EPIIVDPD-RVTIEGKVVGLIR  203 (205)
T ss_pred             --------CEEEEEcCCCCC--CCEEeCCC-cEEEEEEEEEEEE
Confidence                    478888888732  22211110 3579999987764

>PRK12423 LexA repressor; Provisional

Probab=98.41  E-value=3.4e-06  Score=67.45  Aligned_cols=85  Identities=21%  Similarity=0.200  Sum_probs=62.9

Q ss_pred             EEEEEcCCCcc-ccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCCC
Q 030852           30 SIVPVRGSSMS-PTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTND  108 (170)
Q Consensus        30 ~~~~v~~~SM~-Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~~  108 (170)
                      ....|.|+||. |++..          ||++++++-.    .++.||+|++..   +++..+||+.-. +          
T Consensus       115 f~l~V~GdSM~~~~i~~----------Gd~viv~~~~----~~~~Gdivv~~~---~~~~~vKrl~~~-~----------  166 (202)
T PRK12423        115 YLLQVQGDSMIDDGILD----------GDLVGVHRSP----EARDGQIVVARL---DGEVTIKRLERS-G----------  166 (202)
T ss_pred             EEEEEecCcCCCCCcCC----------CCEEEEeCCC----cCCCCCEEEEEE---CCEEEEEEEEEe-C----------
Confidence            45899999997 79999          9999999754    788999999987   457899999754 2          


Q ss_pred             eEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEe
Q 030852          109 VMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILW  150 (170)
Q Consensus       109 ~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~  150 (170)
                            +.+++..+|++  ++...+-+-..-.|+|+|+..+.
T Consensus       167 ------~~~~L~s~N~~--y~~i~~~~~~~~~I~Gvv~g~~r  200 (202)
T PRK12423        167 ------DRIRLLPRNPA--YAPIVVAPDQDFAIEGVFCGLIR  200 (202)
T ss_pred             ------CEEEEEcCCCC--CCCEEcCCCCcEEEEEEEEEEEE
Confidence                  36888888863  22222211123489999998764

>COG1974 LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]

Probab=97.95  E-value=0.00017  Score=57.96  Aligned_cols=88  Identities=22%  Similarity=0.222  Sum_probs=65.7

Q ss_pred             eEEEEEcCCCc-cccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCC
Q 030852           29 ASIVPVRGSSM-SPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTN  107 (170)
Q Consensus        29 ~~~~~v~~~SM-~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~  107 (170)
                      ....+|.|+|| ++.+..          ||+|+|++-.    +.+.||||+.....  ++.-+||..--.          
T Consensus       112 ~f~L~V~GdSM~~~gi~d----------GDlvvV~~~~----~a~~GdiVvA~i~g--~e~TvKrl~~~g----------  165 (201)
T COG1974         112 TFFLRVSGDSMIDAGILD----------GDLVVVDPTE----DAENGDIVVALIDG--EEATVKRLYRDG----------  165 (201)
T ss_pred             eEEEEecCCccccCcCCC----------CCEEEEcCCC----CCCCCCEEEEEcCC--CcEEEEEEEEeC----------
Confidence            45578999999 566666          9999999866    89999999999954  558899987642          


Q ss_pred             CeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEeCC
Q 030852          108 DVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPP  152 (170)
Q Consensus       108 ~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~p~  152 (170)
                             +.++++-.|+.  +....+..- .-.|+|+|+.++|+.
T Consensus       166 -------~~i~L~p~Np~--~~~i~~~~~-~~~I~G~vvgv~r~~  200 (201)
T COG1974         166 -------NQILLKPENPA--YPPIPVDAD-SVTILGKVVGVIRDI  200 (201)
T ss_pred             -------CEEEEEeCCCC--CCCcccCcc-ceEEEEEEEEEEecC
Confidence                   46888888762  223222221 457999999999874

>TIGR02594 conserved hypothetical protein TIGR02594

Probab=86.72  E-value=3.1  Score=31.02  Aligned_cols=41  Identities=24%  Similarity=0.225  Sum_probs=30.0

Q ss_pred             CCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCCCeEEecCCeEEEeeCCCCCC
Q 030852           70 KFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVEGDNPSSS  127 (170)
Q Consensus        70 ~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~~~~~vp~~~~~v~Gdn~~~s  127 (170)
                      .+++||+|.|+..   +.-+|--+++...+              .|.+.++|-|.++.
T Consensus        73 ~p~~GDiv~f~~~---~~~HVGi~~g~~~~--------------~g~i~~lgGNq~~~  113 (129)
T TIGR02594        73 KPAYGCIAVKRRG---GGGHVGFVVGKDKQ--------------TGTIIVLGGNQGDR  113 (129)
T ss_pred             CCCccEEEEEECC---CCCEEEEEEeEcCC--------------CCEEEEeeCCCCCe
Confidence            6899999999863   34477777776554              36888888887553

Members of this protein family known so far are restricted to the bacteria, and for the most to the proteobacteria. The function is unknown.

>PRK00364 groES co-chaperonin GroES; Reviewed

Probab=82.95  E-value=5.1  Score=28.27  Aligned_cols=87  Identities=14%  Similarity=0.084  Sum_probs=48.0

Q ss_pred             CCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCCCeEEecCCeEEEeeCCC--CCCCCCCc
Q 030852           55 SDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVEGDNP--SSSLDSRS  132 (170)
Q Consensus        55 ~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~~~~~vp~~~~~v~Gdn~--~~s~DSR~  132 (170)
                      .||+|++.+...  .+-..|-|++=..  ..++....+|+|+.-....-+....++.+..|...+..+..  .--.|...
T Consensus         6 l~drVLV~~~~~--e~~T~gGI~Lp~~--a~~k~~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~~~~~   81 (95)
T PRK00364          6 LGDRVLVKRLEE--EEKTAGGIVLPDS--AKEKPQEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKIDGEE   81 (95)
T ss_pred             cCCEEEEEEccc--CccccceEEcCcc--ccCCcceEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEECCEE
Confidence            499999988753  2556677776333  23456677788775433222222233445555544443322  11234445


Q ss_pred             cccccCCCEEEEE
Q 030852          133 FGPIPLGLIKGWV  145 (170)
Q Consensus       133 ~G~V~~~~IiGkv  145 (170)
                      |=.++.++|+|++
T Consensus        82 y~iv~~~DIlavi   94 (95)
T PRK00364         82 YLILRESDILAIV   94 (95)
T ss_pred             EEEEEHHHEEEEe
Confidence            6667777777764

>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts

Probab=80.28  E-value=7.7  Score=27.19  Aligned_cols=86  Identities=14%  Similarity=0.081  Sum_probs=48.2

Q ss_pred             CCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCCCeEEecCCeEEEeeCCCC--CCCCCCc
Q 030852           55 SDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVEGDNPS--SSLDSRS  132 (170)
Q Consensus        55 ~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~~~~~vp~~~~~v~Gdn~~--~s~DSR~  132 (170)
                      .||+|++.+...  .+-..|-|++=.+.  ..+.....|+|+.-+...-+....+..+..|..-+..+..-  --.|...
T Consensus         5 l~DrVLV~~~~~--e~~T~~GI~Lp~~~--~~k~~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~   80 (93)
T cd00320           5 LGDRVLVKRIEA--EEKTKGGIILPDSA--KEKPQEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLDGEE   80 (93)
T ss_pred             cCCEEEEEEccc--cceecceEEeCCCc--CCCceEEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEECCEE
Confidence            489999988753  24556777764442  34567778888765443333333344555555444433221  1234445


Q ss_pred             cccccCCCEEEE
Q 030852          133 FGPIPLGLIKGW  144 (170)
Q Consensus       133 ~G~V~~~~IiGk  144 (170)
                      |=.++.++|+|+
T Consensus        81 y~i~~~~DIla~   92 (93)
T cd00320          81 YLILRESDILAV   92 (93)
T ss_pred             EEEEEHHHEEEE
Confidence            556777777765

It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	170
1t7d_A	250	Crystal Structure Of Escherichia Coli Type I Signal		6e-04
1kn9_A	249	Crystal Structure Of A Bacterial Signal Peptidase A		7e-04
1b12_A	248	Crystal Structure Of Type 1 Signal Peptidase From E		7e-04

>pdb|1T7D|A Chain A, Crystal Structure Of Escherichia Coli Type I Signal Peptidase In Complex With A Lipopeptide Inhibitor Length = 250

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 43  FNLTTDSFMGSLS-DDYVLVEKFC------------LQKYKFSHGDVIVFCSPSNHKEKH 89
           F + + S M +L   D++LVEKF             ++      GD++VF  P + K  +
Sbjct: 11  FQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDY 70
Query: 90  VKRIIGLPGDWI 101
           +KR +GLPGD +
Sbjct: 71  IKRAVGLPGDKV 82

>pdb|1KN9|A Chain A, Crystal Structure Of A Bacterial Signal Peptidase Apo- Enzyme, Implications For Signal Peptide Binding And The Ser-Lys Dyad Mechanism. Length = 249

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 43  FNLTTDSFMGSLS-DDYVLVEKFC------------LQKYKFSHGDVIVFCSPSNHKEKH 89
           F + + S M +L   D++LVEKF             ++      GD++VF  P + K  +
Sbjct: 10  FQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDY 69
Query: 90  VKRIIGLPGDWI 101
           +KR +GLPGD +
Sbjct: 70  IKRAVGLPGDKV 81

>pdb|1B12|A Chain A, Crystal Structure Of Type 1 Signal Peptidase From Escherichia Coli In Complex With A Beta-Lactam Inhibitor Length = 248

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Query: 43  FNLTTDSFMGSLS-DDYVLVEKFC------------LQKYKFSHGDVIVFCSPSNHKEKH 89
           F + + S M +L   D++LVEKF             ++      GD++VF  P + K  +
Sbjct: 9   FQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDY 68
Query: 90  VKRIIGLPGDWI 101
           +KR +GLPGD +
Sbjct: 69  IKRAVGLPGDKV 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
1b12_A	248	Signal peptidase I; serine proteinase, serine-depe	1e-07

>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A* Length = 248

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 28/80 (35%)

Query: 37  SSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFS---------------HGDVIVFCS 81
            SM PT           L  D++LVEKF    Y                   GD++VF  
Sbjct: 14  GSMMPTL----------LIGDFILVEKF---AYGIKDPIYQKTLIETGHPKRGDIVVFKY 60

Query: 82  PSNHKEKHVKRIIGLPGDWI 101
           P + K  ++KR +GLPGD +
Sbjct: 61  PEDPKLDYIKRAVGLPGDKV 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
1b12_A	248	Signal peptidase I; serine proteinase, serine-depe	100.0
1kca_A	109	Repressor protein CI; gene regulation, DNA-binding	99.37
1umu_A	116	UMUD'; induced mutagenesis, SOS mutagenesis, DNA r	99.19
1jhf_A	202	LEXA repressor; LEXA SOS repressor, hydrolase; 1.8	98.99
2hnf_A	133	Repressor protein CI101-229DM-K192A; viral protein	98.93
3bdn_A	236	Lambda repressor; repressor, allostery; HET: DNA;	98.9
3k2z_A	196	LEXA repressor; winged helix-turn-helix, SOS syste	98.68
2fjr_A	189	Repressor protein CI; genetic switch, regulation,	96.73

>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*

Probab=100.00  E-value=1.6e-34  Score=235.90  Aligned_cols=123  Identities=31%  Similarity=0.470  Sum_probs=107.5

Q ss_pred             HHheeeEEEEEcCCCccccccCCCcCCCCCCCCcEEEEEceecc------------CCCCccccEEEEecCCCCCcceEE
Q 030852           24 ISDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQ------------KYKFSHGDVIVFCSPSNHKEKHVK   91 (170)
Q Consensus        24 i~~~~~~~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~------------~~~~~~GDiV~f~~p~~~~~~~vK   91 (170)
                      ++.|+++++.|+|+||+|||+.          ||+|+++|+.+.            ..++++||||+|+.|.+++..+||
T Consensus         1 ir~fv~~~~~v~g~SM~Ptl~~----------GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iK   70 (248)
T 1b12_A            1 VRSFIYEPFQIPSGSMMPTLLI----------GDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIK   70 (248)
T ss_dssp             -CBCCEEEEECCSCTTTTTSCT----------TEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEE
T ss_pred             CeEEEEEEEEeccccccccccC----------CCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEE
Confidence            4578999999999999999999          999999998653            258999999999999877889999


Q ss_pred             EEEeeCCCeEEecCC-------C---------------------------------------------------------
Q 030852           92 RIIGLPGDWIGTPMT-------N---------------------------------------------------------  107 (170)
Q Consensus        92 RVia~~Gd~v~i~~~-------~---------------------------------------------------------  107 (170)
                      ||+|+|||+|.+.++       .                                                         
T Consensus        71 RViglpGD~v~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~  150 (248)
T 1b12_A           71 RAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSE  150 (248)
T ss_dssp             EEEECTTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEE
T ss_pred             EEEeeCCCEEEEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhh
Confidence            999999999987543       0                                                         


Q ss_pred             ---------------------------------CeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEeCCCC
Q 030852          108 ---------------------------------DVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQR  154 (170)
Q Consensus       108 ---------------------------------~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~p~~~  154 (170)
                                                       ..++||+|+|||+|||+++|.|||+||+||.++|+|||.+++||+++
T Consensus       151 ~~e~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~G~Vp~~~IvGka~~i~~s~~~  230 (248)
T 1b12_A          151 RKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDK  230 (248)
T ss_dssp             EEEEETTEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC-
T ss_pred             HHhhhcCccceeEecCCccccccchhcccccccccEEeCCCcEEEecCCCcccCCCCcccccCHHHeEEEEEEEEEeCCc
Confidence                                             02489999999999999999999999999999999999999999987


Q ss_pred             cc
Q 030852          155 VR  156 (170)
Q Consensus       155 ~~  156 (170)
                      ..
T Consensus       231 ~~  232 (248)
T 1b12_A          231 QE  232 (248)
T ss_dssp             --
T ss_pred             cc
Confidence            64

>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1

Probab=99.37  E-value=5.4e-12  Score=90.52  Aligned_cols=90  Identities=22%  Similarity=0.273  Sum_probs=71.1

Q ss_pred             EEEEEcCCCcc------ccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEe
Q 030852           30 SIVPVRGSSMS------PTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT  103 (170)
Q Consensus        30 ~~~~v~~~SM~------Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i  103 (170)
                      ....|.|+||+      |+|++          ||++++++..    .++.||+|++..+.  ++..+||+...+      
T Consensus        14 f~~~V~GdSM~~~~g~~p~i~~----------Gd~v~Vd~~~----~~~~Gdivv~~~~~--~~~~vKrl~~~~------   71 (109)
T 1kca_A           14 FWLEVEGNSMTAPTGSKPSFPD----------GMLILVDPEQ----AVEPGDFCIARLGG--DEFTFKKLIRDS------   71 (109)
T ss_dssp             EEEECCSSTTCCCTTCSSCCCT----------TCEEEEETTS----CCCTTCEEEEECST--TCEEEEEEEEET------
T ss_pred             EEEEEeCcCcCCCCCCCCeeCC----------CCEEEEecCC----cCCCCCEEEEEECC--CeEEEEEEEEeC------
Confidence            46889999999      99999          9999999864    78999999999843  478999998743      


Q ss_pred             cCCCCeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEeCCCCcc
Q 030852          104 PMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVR  156 (170)
Q Consensus       104 ~~~~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~p~~~~~  156 (170)
                                 |++++.+||+..  .....  -..-.|+|+|+..+||+..|+
T Consensus        72 -----------~~~~L~s~N~~y--~~~~~--~~~~~IiG~Vv~~~~~~~~~~  109 (109)
T 1kca_A           72 -----------GQVFLQPLNPQY--PMIPC--NESCSVVGKVIASQWPEETFG  109 (109)
T ss_dssp             -----------TEEEEECSSTTS--CCEEC--CTTCEEEEEEEEEECCGGGGC
T ss_pred             -----------CEEEEEECCCCC--CCEEc--CCCcEEEEEEEEEEeCHHHcC
Confidence                       478899999732  11111  135679999999999976653

>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A

Probab=99.19  E-value=1.4e-10  Score=83.58  Aligned_cols=87  Identities=20%  Similarity=0.187  Sum_probs=64.2

Q ss_pred             eEEEEEcCCCccc-cccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCC
Q 030852           29 ASIVPVRGSSMSP-TFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTN  107 (170)
Q Consensus        29 ~~~~~v~~~SM~P-tl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~  107 (170)
                      .....|.|+||+| +++.          ||++++++..    .++.||+|++..   +++..+||+...           
T Consensus        27 ~~~~~v~GdSM~p~~i~~----------Gd~v~vd~~~----~~~~gdivv~~~---~~~~~vKr~~~~-----------   78 (116)
T 1umu_A           27 TYFVKASGDSMIDGGISD----------GDLLIVDSAI----TASHGDIVIAAV---DGEFTVKKLQLR-----------   78 (116)
T ss_dssp             EEEEECCSSTTGGGTCCT----------TCEEEEETTS----CCCTTCEEEEEE---TTEEEEEEEECS-----------
T ss_pred             EEEEEECCCCcCCCCCCC----------CCEEEEEcCC----CCCCCCEEEEEE---CCEEEEEEEEeC-----------
Confidence            4578999999999 8999          9999999865    689999999998   357899999874           


Q ss_pred             CeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEeCC
Q 030852          108 DVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPP  152 (170)
Q Consensus       108 ~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~p~  152 (170)
                            + .+++.+||+.  +.......-..-.|+|+|++.+..+
T Consensus        79 ------~-~~~L~s~N~~--y~~~~i~~~~~~~IiG~Vv~~~r~~  114 (116)
T 1umu_A           79 ------P-TVQLIPMNSA--YSPITISSEDTLDVFGVVIHVVKAA  114 (116)
T ss_dssp             ------S-SCEEECSSTT--SCCEECCTTSCEEEEEEEEEEEC--
T ss_pred             ------C-cEEEECCCCC--CCCEEcCCCCeEEEEEEEEEEEEec
Confidence                  2 5778888862  1111111112346999999887654

>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A

Probab=98.99  E-value=2.6e-09  Score=83.31  Aligned_cols=87  Identities=21%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             eEEEEEcCCCcccc-ccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCC
Q 030852           29 ASIVPVRGSSMSPT-FNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTN  107 (170)
Q Consensus        29 ~~~~~v~~~SM~Pt-l~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~  107 (170)
                      .....|.|+||+|+ +.+          ||++++++..    .++.||+|++..   +++..+||+. .+|         
T Consensus       110 ~~~~~v~GdSM~p~~i~~----------Gd~v~vd~~~----~~~~G~i~v~~~---~~~~~vKrl~-~~~---------  162 (202)
T 1jhf_A          110 DFLLRVSGMSMKDIGIMD----------GDLLAVHKTQ----DVRNGQVVVARI---DDEVTVKRLK-KQG---------  162 (202)
T ss_dssp             CEEEECCSSTTGGGTCCT----------TCEEEEEECS----CCCTTSEEEEEE---TTEEEEEEEE-EET---------
T ss_pred             EEEEEECCCCCCCCCCCC----------CCEEEEeccC----CcCCCeEEEEEE---CCEEEEEEEE-EeC---------
Confidence            34688999999999 999          9999998754    789999999997   4688999998 455         


Q ss_pred             CeEEecCCeEEEeeCCCCCCCCCCcccc-ccCCCEEEEEEEEEeC
Q 030852          108 DVMKVPNGHCWVEGDNPSSSLDSRSFGP-IPLGLIKGWVTHILWP  151 (170)
Q Consensus       108 ~~~~vp~~~~~v~Gdn~~~s~DSR~~G~-V~~~~IiGkv~~~~~p  151 (170)
                             |.+++.+||+..  ....... -..-.|+|+|+..+..
T Consensus       163 -------~~~~l~s~N~~y--~~~~~~~~~~~~~IiG~Vv~~~r~  198 (202)
T 1jhf_A          163 -------NKVELLPENSEF--KPIVVDLRQQSFTIEGLAVGVIRN  198 (202)
T ss_dssp             -------TEEEEECSSTTC--CCEEEETTTSCEEEEEEEEEEEEC
T ss_pred             -------CEEEEEECCCCC--CCEEccCCCCceEEEEEEEEEEEc
Confidence                   477888888621  1111110 0123599999988764

>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A

Probab=98.93  E-value=6.8e-09  Score=76.45  Aligned_cols=82  Identities=20%  Similarity=0.185  Sum_probs=63.0

Q ss_pred             EEEEEcCCCcc------ccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEe
Q 030852           30 SIVPVRGSSMS------PTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT  103 (170)
Q Consensus        30 ~~~~v~~~SM~------Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i  103 (170)
                      ....|.|+||+      |+|++          ||++++++..    .++.||+|++....  ++..+||+...+      
T Consensus        45 f~~~V~GdSM~~~~g~~p~i~~----------Gd~v~vd~~~----~~~~Gdivv~~~~~--~~~~vKrl~~~~------  102 (133)
T 2hnf_A           45 FWLEVEGNSMTTPTGSKTSFPD----------GMLILVDPEQ----AVEPGDFCIARLGG--DEFTFAKLIRDS------  102 (133)
T ss_dssp             EEEECCSSTTCCC---CCCCCT----------TCEEEEETTS----CCCTTSEEEEEETT--TEEEEEEEEEET------
T ss_pred             EEEEEeCCCcCCCcCCCCccCC----------CCEEEEccCC----CCCCCCEEEEEECC--CEEEEEEEEEeC------
Confidence            46889999999      99999          9999999854    78999999998842  478999998642      


Q ss_pred             cCCCCeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEE
Q 030852          104 PMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHI  148 (170)
Q Consensus       104 ~~~~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~  148 (170)
                                 |.+++.++|+..  ......  ..-.|+|+|+..
T Consensus       103 -----------~~~~L~s~N~~y--~~~~~~--~~~~IiG~Vv~~  132 (133)
T 2hnf_A          103 -----------GQVFLQPLNPQY--PMIPCN--ESCSVVGKVIAS  132 (133)
T ss_dssp             -----------TEEEEECSSTTS--CCEECS--TTEEEEEEEEEE
T ss_pred             -----------CeEEEEECCCCC--CCEEcC--CCCEEEEEEEEE
Confidence                       478889998732  111111  345799999864

>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}

Probab=98.90  E-value=4.6e-09  Score=83.21  Aligned_cols=90  Identities=22%  Similarity=0.277  Sum_probs=68.4

Q ss_pred             EEEEEcCCCcc------ccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEe
Q 030852           30 SIVPVRGSSMS------PTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT  103 (170)
Q Consensus        30 ~~~~v~~~SM~------Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i  103 (170)
                      ....|.|+||+      |++.+          ||+|++++..    .++.||+|++...  .+...+||+...+      
T Consensus       141 ~~l~V~GdSM~~~~g~~P~i~~----------Gd~v~vd~~~----~~~~g~ivv~~~~--~~~~~vKrl~~~~------  198 (236)
T 3bdn_A          141 FWLEVEGNSMTAPTGSKPSFPD----------GMLILVDPEQ----AVEPGDFCIARLG--GDEFTFKKLIRGS------  198 (236)
T ss_dssp             EEEECCSSSSCCCSSCSSCCCS----------SCEEEECCSS----CCCTTSEEEEEST--TTCCCCEEEECCS------
T ss_pred             EEEEEeCCCcCCCCCCCCcCCC----------CCEEEECCCC----CCCCCcEEEEEEC--CCeEEEEEEEEcC------
Confidence            45789999999      99999          9999998754    7899999999872  3578999998643      


Q ss_pred             cCCCCeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEeCCCCcc
Q 030852          104 PMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVR  156 (170)
Q Consensus       104 ~~~~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~p~~~~~  156 (170)
                                 |.+++.+||+..  .....-  ..-.|+|+|+..+||...|+
T Consensus       199 -----------~~~~L~s~N~~y--~~~~~~--~~~~IiG~Vv~~~~~~~~~~  236 (236)
T 3bdn_A          199 -----------GQVFLQPLNPQY--PMIPCN--ESCSVVGKVIASQWPEETFG  236 (236)
T ss_dssp             -----------SSCEEECSSTTS--CCBC----CCCEEEEEEEECCCCSSSCC
T ss_pred             -----------CcEEEEeCCCCC--CCeecC--CCcEEEEEEEEEEcCHHhcC
Confidence                       467788888632  111111  34579999999999877663

>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}

Probab=98.68  E-value=1.7e-07  Score=72.95  Aligned_cols=85  Identities=20%  Similarity=0.160  Sum_probs=64.4

Q ss_pred             eEEEEEcCCCc-cccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCC
Q 030852           29 ASIVPVRGSSM-SPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTN  107 (170)
Q Consensus        29 ~~~~~v~~~SM-~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~  107 (170)
                      .....|.|+|| +|++.+          ||++++++..    .++.||+|++..   +++..+||+.-.+          
T Consensus       109 ~f~l~v~GdSM~~p~i~~----------GD~viv~~~~----~~~~G~ivv~~~---~~~~~vKr~~~~~----------  161 (196)
T 3k2z_A          109 HFLLKVKGESMIEEHICD----------GDLVLVRRQD----WAQNGDIVAAMV---DGEVTLAKFYQRG----------  161 (196)
T ss_dssp             EEEEECCSSTTGGGTCCT----------TCEEEEEECS----CCCTTCEEEEEE---TTEEEEEEEEEET----------
T ss_pred             EEEEEEeCCCcCCCCCCC----------CCEEEEeccC----cCCCCCEEEEEE---CCcEEEEEEEEEC----------
Confidence            45689999999 699999          9999999864    789999999988   3589999997642          


Q ss_pred             CeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEe
Q 030852          108 DVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILW  150 (170)
Q Consensus       108 ~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~  150 (170)
                             |.+++..+|+..  .....- -..-.|+|+|+..+.
T Consensus       162 -------~~~~L~~~N~~y--~~i~i~-~~~~~i~G~Vv~~~r  194 (196)
T 3k2z_A          162 -------DTVELRPANREM--SSMFFR-AEKVKILGKVVGVFR  194 (196)
T ss_dssp             -------TEEEEECSCTTS--CCEEEE-GGGCEEEEEEEEEEE
T ss_pred             -------CEEEEEECCCCC--CCEEec-CCCEEEEEEEEEEEE
Confidence                   478888888632  111111 123579999998764

>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A

Probab=96.73  E-value=0.0092  Score=45.01  Aligned_cols=66  Identities=17%  Similarity=0.146  Sum_probs=46.0

Q ss_pred             CcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCCCeEEecCCeEEEeeCCCCCCCCCCcccc
Q 030852           56 DDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGP  135 (170)
Q Consensus        56 gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~  135 (170)
                      ||+|+|++-     ....|+++++..   +++..+||+.-.+|+                .+.+.++|++     ...- 
T Consensus       122 Gd~v~Vd~~-----~~~~g~i~vv~~---~g~~~vKrl~~~~~~----------------~i~L~s~N~~-----~~i~-  171 (189)
T 2fjr_A          122 GKIYFVDKQ-----ASLSDGLWLVDI---KGAISIRELTKLPGR----------------KLHVAGGKVP-----FECG-  171 (189)
T ss_dssp             TEEEEEETT-----CCSCSEEEEEEE---TTEEEEEEEEEETTT----------------EEEEESSSSC-----EEEE-
T ss_pred             CcEEEEEcC-----CccCCCEEEEEe---CCeEEEEEEEECCCC----------------EEEEEeCCCC-----eEec-
Confidence            999999964     256699999987   468899999887664                5666677651     1110 


Q ss_pred             ccCCCEEEEEEEEEeC
Q 030852          136 IPLGLIKGWVTHILWP  151 (170)
Q Consensus       136 V~~~~IiGkv~~~~~p  151 (170)
                      ...=.|+|+|++.+-.
T Consensus       172 ~~~i~IiG~Vv~~~r~  187 (189)
T 2fjr_A          172 IDDIKTLGRVVGVYSE  187 (189)
T ss_dssp             TTSSEEEEEEEEEEEE
T ss_pred             ccceEEEEEEEEEEEe
Confidence            1234699999987643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d1b12a_	247	b.87.1.2 (A:) Type 1 signal peptidase {Escherichia	1e-09
d1b12a_	247	b.87.1.2 (A:) Type 1 signal peptidase {Escherichia	3e-04

>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]} Length = 247

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]

 Score = 53.0 bits (126), Expect = 1e-09
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 66  LQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVEGDNPS 125
           L + K + GDV          +  V      PG  + T        VP G  ++ GDN  
Sbjct: 147 LSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLAT------WIVPPGQYFMMGDNRD 200

Query: 126 SSLDSRSFGPIPLGLIKGWVTHILWP 151
           +S DSR +G +P   + G  T I   
Sbjct: 201 NSADSRYWGFVPEANLVGRATAIWMS 226

>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]} Length = 247

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 22/94 (23%)

Query: 34  VRGSSMSPTFNLTTDSFMGSLSDDYVLVEKF------------CLQKYKFSHGDVIVFCS 81
           +   SM PT           L  D++LVEKF             ++      GD++VF  
Sbjct: 10  IPSGSMMPTL----------LIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKY 59

Query: 82  PSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNG 115
           P + K  ++KR +GLPGD +     +  + +  G
Sbjct: 60  PEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPG 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d1b12a_	247	Type 1 signal peptidase {Escherichia coli [TaxId:	100.0
d1f39a_	101	lambda repressor C-terminal domain {Bacteriophage	99.15
d1jhfa2	126	LexA C-terminal domain {Escherichia coli [TaxId: 5	98.95
d1umua_	105	UmuD' {Escherichia coli [TaxId: 562]}	98.71
d1aono_	97	Chaperonin-10 (GroES) {Escherichia coli [TaxId: 56	81.45

>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-35  Score=237.94  Aligned_cols=120  Identities=32%  Similarity=0.469  Sum_probs=107.8

Q ss_pred             HheeeEEEEEcCCCccccccCCCcCCCCCCCCcEEEEEceeccCC------------CCccccEEEEecCCCCCcceEEE
Q 030852           25 SDRYASIVPVRGSSMSPTFNLTTDSFMGSLSDDYVLVEKFCLQKY------------KFSHGDVIVFCSPSNHKEKHVKR   92 (170)
Q Consensus        25 ~~~~~~~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~------------~~~~GDiV~f~~p~~~~~~~vKR   92 (170)
                      +.|+++++.|+++||+|||+.          ||+++++|+.|..+            .+++||+|+|+.|.++...++||
T Consensus         1 R~f~~~~f~IPs~SMePTL~~----------GD~l~V~K~~Yg~r~P~~~~~~~~~~~~~rgdivvf~~p~~~~~~~ikR   70 (247)
T d1b12a_           1 RSFIYEPFQIPSGSMMPTLLI----------GDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKR   70 (247)
T ss_dssp             CBCCEEEEECCSCTTTTTSCT----------TEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEE
T ss_pred             CEEEEEEEEeCcccccchhcc----------CCEEEEEccccCccCCccCcccccccCcccCceeeecCCCCCCcccccc
Confidence            358999999999999999999          99999999887643            55999999999999888899999


Q ss_pred             EEeeCCCeEEecC-------------------------------------------------------------------
Q 030852           93 IIGLPGDWIGTPM-------------------------------------------------------------------  105 (170)
Q Consensus        93 Via~~Gd~v~i~~-------------------------------------------------------------------  105 (170)
                      |+|+|||++.+.+                                                                   
T Consensus        71 ~ig~pGD~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (247)
T d1b12a_          71 AVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSER  150 (247)
T ss_dssp             EEECTTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEE
T ss_pred             ccCCCCCeEEEecccceEEecccccccceeecceeecccccCcccceeeeeeccCceeccceeeccccccccCceEeeee
Confidence            9999999998731                                                                   


Q ss_pred             ------------------------------CCCeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEeCCCC
Q 030852          106 ------------------------------TNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQR  154 (170)
Q Consensus       106 ------------------------------~~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~p~~~  154 (170)
                                                    ....++||+|||||+|||+++|.|||+||+||+++|+|||.+++||+++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vp~~~yfvmGDNR~nS~DSR~wG~Vp~~~I~Gka~~i~~p~~~  229 (247)
T d1b12a_         151 KETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDK  229 (247)
T ss_dssp             EEEETTEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC-
T ss_pred             eeccCCcceeEEecccchhcccccccCCccccceEEEeCCeEEEecCCCCCCccccccCcCCHHHeEEEEEEEEEECCC
Confidence                                          0124689999999999999999999999999999999999999999975

>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: lambda repressor C-terminal domain
species: Bacteriophage lambda [TaxId: 10710]

Probab=99.15  E-value=2.4e-10  Score=79.25  Aligned_cols=90  Identities=22%  Similarity=0.261  Sum_probs=68.7

Q ss_pred             EEEEEcCCCc------cccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEe
Q 030852           30 SIVPVRGSSM------SPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT  103 (170)
Q Consensus        30 ~~~~v~~~SM------~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i  103 (170)
                      ...+|.|+||      +|++++          ||+|++++-.    .++.||+|++...  .++..+||+.-.+      
T Consensus         6 F~l~V~GdSM~~~~~~ep~i~~----------Gd~viVd~~~----~~~~g~ivva~~~--~~~~~vKr~~~~~------   63 (101)
T d1f39a_           6 FWLEVEGNSMTAPTGSKPSFPD----------GMLILVDPEQ----AVEPGDFCIARLG--GDEFTFKKLIRDS------   63 (101)
T ss_dssp             EEEECCSSTTCCCTTCSSCCCT----------TCEEEEETTS----CCCTTCEEEEECT--TSCEEEEEEEEET------
T ss_pred             EEEEEeCCccCCCcccCCCcCC----------CCEEEEEecC----ccCCCCEEEEEEC--CCeEEEEEEEEcC------
Confidence            4578999999      899999          9999999854    8899999988773  3467899987542      


Q ss_pred             cCCCCeEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEEeCCCCcc
Q 030852          104 PMTNDVMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHILWPPQRVR  156 (170)
Q Consensus       104 ~~~~~~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~~p~~~~~  156 (170)
                                 |++++..+|+..  .....  -..-.|+|+|+..+||-.-||
T Consensus        64 -----------~~~~L~s~N~~y--~~i~~--~~~~~IiG~Vv~s~~p~~~~~  101 (101)
T d1f39a_          64 -----------GQVFLQPLNPQY--PMIPC--NESCSVVGKVIASQWPEETFG  101 (101)
T ss_dssp             -----------TEEEEECSSTTS--CCEEC--STTCEEEEEEEEEECCGGGGC
T ss_pred             -----------CEEEEEECCCCC--CCCcC--CCCcEEEEEEEEEECcHHHCC
Confidence                       478889998732  22211  134579999999999976654

>d1jhfa2 b.87.1.1 (A:73-198) LexA C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: LexA C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=2.6e-09  Score=76.59  Aligned_cols=85  Identities=20%  Similarity=0.152  Sum_probs=64.0

Q ss_pred             EEEEEcCCCcccc-ccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCCC
Q 030852           30 SIVPVRGSSMSPT-FNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTND  108 (170)
Q Consensus        30 ~~~~v~~~SM~Pt-l~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~~  108 (170)
                      ...+|.|+||+|+ ++.          ||++++++..    +++.||+|++..   +++..+||+.-.+           
T Consensus        39 f~lrV~GdSM~~~~i~~----------gd~viv~~~~----~~~~G~ivv~~~---~ge~~vKrl~~~~-----------   90 (126)
T d1jhfa2          39 FLLRVSGMSMKDIGIMD----------GDLLAVHKTQ----DVRNGQVVVARI---DDEVTVKRLKKQG-----------   90 (126)
T ss_dssp             EEEECCSSTTGGGTCCT----------TCEEEEEECS----CCCTTSEEEEEE---TTEEEEEEEEEET-----------
T ss_pred             EEEEEcCCcccCcccCC----------CEEEEEeccc----cccCCCEEEEEE---CCEEEEEEEEEcC-----------
Confidence            4689999999997 888          9999999754    899999999998   5688999998653           


Q ss_pred             eEEecCCeEEEeeCCCCCCCCCCccc-cccCCCEEEEEEEEEe
Q 030852          109 VMKVPNGHCWVEGDNPSSSLDSRSFG-PIPLGLIKGWVTHILW  150 (170)
Q Consensus       109 ~~~vp~~~~~v~Gdn~~~s~DSR~~G-~V~~~~IiGkv~~~~~  150 (170)
                            |.+++..+|+...  ...+. .=..=.|+|+|+.++.
T Consensus        91 ------~~~~L~s~N~~y~--pi~~~~~~~~~~IiG~Vv~vir  125 (126)
T d1jhfa2          91 ------NKVELLPENSEFK--PIVVDLRQQSFTIEGLAVGVIR  125 (126)
T ss_dssp             ------TEEEEECSSTTCC--CEEEETTTSCEEEEEEEEEEEE
T ss_pred             ------CEEEEecCCcCCC--CeEccCCCCcEEEEEEEEEEEC
Confidence                  4789999987321  11110 0011269999998863

>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: UmuD'
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=4.1e-08  Score=68.28  Aligned_cols=83  Identities=20%  Similarity=0.213  Sum_probs=62.1

Q ss_pred             EEEEEcCCCc-cccccCCCcCCCCCCCCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCCC
Q 030852           30 SIVPVRGSSM-SPTFNLTTDSFMGSLSDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTND  108 (170)
Q Consensus        30 ~~~~v~~~SM-~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~~  108 (170)
                      ...+|.|+|| +|.+.+          ||++++++..    .++.||+|++..   +++..+||+.. .           
T Consensus        21 f~~rV~GdSM~~~gI~~----------GDlliVd~~~----~~~~g~ivva~i---~ge~~vKrl~~-~-----------   71 (105)
T d1umua_          21 YFVKASGDSMIDGGISD----------GDLLIVDSAI----TASHGDIVIAAV---DGEFTVKKLQL-R-----------   71 (105)
T ss_dssp             EEEECCSSTTGGGTCCT----------TCEEEEETTS----CCCTTCEEEEEE---TTEEEEEEEEC-S-----------
T ss_pred             EEEEEcCCccccCccCC----------CCEEEEEccc----ccccCcEEEEEE---CCEEEEEEEEE-C-----------
Confidence            4689999999 588999          9999999865    889999999999   57889999853 2           


Q ss_pred             eEEecCCeEEEeeCCCCCCCCCCccccccCCCEEEEEEEEE
Q 030852          109 VMKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLIKGWVTHIL  149 (170)
Q Consensus       109 ~~~vp~~~~~v~Gdn~~~s~DSR~~G~V~~~~IiGkv~~~~  149 (170)
                            |+.+++.+|+.  ++.....+-..=.|+|+|++.+
T Consensus        72 ------~~~~L~~~N~~--y~~i~i~~~~~~~I~GvVv~vi  104 (105)
T d1umua_          72 ------PTVQLIPMNSA--YSPITISSEDTLDVFGVVIHVV  104 (105)
T ss_dssp             ------SSCEEECSSTT--SCCEECCTTSCEEEEEEEEEEE
T ss_pred             ------CcEEEECCCCC--CCCEEcCCCCCEEEEEEEEEEE
Confidence                  35667778762  2333222222335999999875

>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Escherichia coli [TaxId: 562]

Probab=81.45  E-value=0.95  Score=29.15  Aligned_cols=87  Identities=15%  Similarity=0.112  Sum_probs=46.2

Q ss_pred             CCcEEEEEceeccCCCCccccEEEEecCCCCCcceEEEEEeeCCCeEEecCCCCeEEecCCeEEEeeCCCC---CCCCCC
Q 030852           55 SDDYVLVEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVMKVPNGHCWVEGDNPS---SSLDSR  131 (170)
Q Consensus        55 ~gd~vlv~k~~~~~~~~~~GDiV~f~~p~~~~~~~vKRVia~~Gd~v~i~~~~~~~~vp~~~~~v~Gdn~~---~s~DSR  131 (170)
                      .||+|++.+....  +-..|-|++=..  ...+.....|+|+......-.....+..+..|...+.+++..   ...|..
T Consensus         6 lgdrVLVk~~~~e--~kT~gGIiLp~~--~~~~~~~g~VvavG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~~~~~dg~   81 (97)
T d1aono_           6 LHDRVIVKRKEVE--TKSAGGIVLTGS--AAAKSTRGEVLAVGNGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDNE   81 (97)
T ss_dssp             CTTEEEEEECCTT--CTTTTSSCCCCC--CSCCCCEEEEEEECSBCCTTSSCCCBCSCCTTCEEEECCCSSCEEEESSSC
T ss_pred             cCCEEEEEEcccc--cEecceEEECCc--cccCceeEEEEEEeeeEEccCCcCccccCCCCCEEEEecccCceEEEECCE
Confidence            3999999987632  444676665322  233445566766643211111222334455555555544321   134555


Q ss_pred             ccccccCCCEEEEE
Q 030852          132 SFGPIPLGLIKGWV  145 (170)
Q Consensus       132 ~~G~V~~~~IiGkv  145 (170)
                      .|=.++.++|+|++
T Consensus        82 ~y~ii~e~dIlavi   95 (97)
T d1aono_          82 EVLIMSESDILAIV   95 (97)
T ss_dssp             EEEEEETTTEEEEE
T ss_pred             EEEEEEHHHEEEEE
Confidence            56667777888775