Citrus Sinensis ID: 030864

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKVVSSQQQLED
Secondary Structure (PSIPRED)
cccccccccccccHHccccccccccccccHHHHHHHHHccccccEEEEEcccEEEEEEcccccccccccccccccEEEEcccccccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHcccccEEEEEEEccccEEEEEEEccccEEEEEEHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccHHHcccccccccccccHHHHHHHHHHcccccEEEEEcccEEEEEEccccccccccEEEEHccHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHcccccEEEEEEEccccEEEEEEccccccEEEEEEEEccHHHccc
Coil and Loop (DISEMBL)
mlgvfssaivsppeelvaagsrtpspkttsTALVDRFLQTnssavsvqvGDNVTLaythqnesplrqrsfAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKAlrdrapyppnhvvghlSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKVVSSQQQLED
Flexible Loop (DISEMBL)
mlgvfssaivsppeelvaagsrtpspkTTSTALVDRFLQTNSSAVSVQVGDNVTLAYthqnesplrqrSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSlkvvssqqqled
Low Complexity Region (SEG)
MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTlfvasvlaashlllslkvvssqqqlED
Disordered region (IsUnstruct)
*********************************VDRFLQTNSSAVSVQVGDNVTLAYTHQN**PLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKVV********
Disordered Region (DISOPRED)
MLGVFSSAIVSP************************FLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKVVSSQ*****
Disordered Region (DISEMBL)
MLGVFSSAIVSPPEE*************TSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKV*********
Disordered Region (DISPRO)
ML**FSSAIVSPPEELVA*********TTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKVVSS******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKVVSSQQQLED
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
P24805	149	Stem-specific protein TSJ	N/A	no	0.858	0.979	0.436	5e-31

>sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1

 Score =  133 bits (335), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 92/149 (61%), Gaps = 3/149 (2%)

Query: 1   MLGVFSSAIVSPPEELV--AAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYT 58
           ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++
Sbjct: 1   MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFS 59

Query: 59  HQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAP 118
           H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAP
Sbjct: 60  HGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAP 119

Query: 119 YPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147
           YPP+ V+  L G FAFI++D   STLF+A
Sbjct: 120 YPPDQVIKELEGKFAFILFDSKASTLFLA 148


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.130    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,680,287
Number of Sequences: 539616
Number of extensions: 1979551
Number of successful extensions: 5702
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5699
Number of HSP's gapped (non-prelim): 5
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
56606534	236	aluminum-induced protein [Codonopsis lan	0.870	0.627	0.844	4e-69
388513727	236	unknown [Lotus japonicus]	0.870	0.627	0.837	1e-68
255552269	236	Stem-specific protein TSJT1, putative [R	0.870	0.627	0.858	5e-68
34541994	236	Al-induced protein [Gossypium hirsutum]	0.870	0.627	0.844	6e-68
224100337	236	predicted protein [Populus trichocarpa]	0.870	0.627	0.858	1e-67
225432548	236	PREDICTED: stem-specific protein TSJT1 [	0.870	0.627	0.851	1e-67
76573367	252	unknown [Solanum tuberosum]	0.870	0.587	0.837	5e-67
257219564	236	Al-induced protein [Jatropha curcas]	0.870	0.627	0.844	7e-67
13958130	236	aluminium induced protein [Avicennia mar	0.870	0.627	0.824	8e-67
238800460	236	aluminum-induced protein [Cucumis hystri	0.870	0.627	0.831	1e-66

>gi|56606534|gb|AAW02789.1| aluminum-induced protein [Codonopsis lanceolata]

 Score =  265 bits (678), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 125/148 (84%), Positives = 140/148 (94%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+I+SPPEELVAAGSRTPSPK T+TALV+RFL++N+SAVS+QVGD+V LAYTH 
Sbjct: 1   MLGVFSSSIMSPPEELVAAGSRTPSPKITATALVNRFLKSNASAVSMQVGDDVHLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NESP   RSFAVKDEIFCLFEGALDNLGSL+QQYGL+KSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NESPSAPRSFAVKDEIFCLFEGALDNLGSLKQQYGLSKSANEVVLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
           PNHVVGHL G FAF+V+DKSTSTLFVA+
Sbjct: 121 PNHVVGHLEGNFAFVVFDKSTSTLFVAT 148

Source: Codonopsis lanceolata

Species: Codonopsis lanceolata

Genus: Codonopsis

Family: Campanulaceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513727|gb|AFK44925.1| unknown [Lotus japonicus]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/148 (83%), Positives = 141/148 (95%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+IVSPP+ELVAAGSRTPSPKTT+ AL+ RF+++N+SAVSV++G+NV LAY+H+
Sbjct: 1   MLGVFSSSIVSPPDELVAAGSRTPSPKTTAGALLKRFVESNASAVSVEIGENVQLAYSHR 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NESP + RSFAVKDEIFC+FEGALDNLGSLRQQYGLAKSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NESPWQPRSFAVKDEIFCIFEGALDNLGSLRQQYGLAKSANEVLLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
            NHVVGHLSG FAFIV+DKSTSTLFVAS
Sbjct: 121 ANHVVGHLSGSFAFIVFDKSTSTLFVAS 148

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552269|ref|XP_002517179.1| Stem-specific protein TSJT1, putative [Ricinus communis] gi|223543814|gb|EEF45342.1| Stem-specific protein TSJT1, putative [Ricinus communis]

 Score =  261 bits (668), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 127/148 (85%), Positives = 136/148 (91%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSSAIVSPP+ELVAAGSRTPSPK TS ALV RFL TN SAVS+Q+GDN  LAYTH 
Sbjct: 1   MLGVFSSAIVSPPDELVAAGSRTPSPKITSDALVKRFLDTNPSAVSLQIGDNAQLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           +ES L+ RSFAVKD+IFCLFEGALDNLGSL+QQYGLAKSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  SESLLQPRSFAVKDDIFCLFEGALDNLGSLKQQYGLAKSANEVVLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
           PNHVVGHLSG FAFIV+D STSTLFVAS
Sbjct: 121 PNHVVGHLSGSFAFIVFDNSTSTLFVAS 148

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34541994|gb|AAQ74889.1| Al-induced protein [Gossypium hirsutum]

 Score =  261 bits (668), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 125/148 (84%), Positives = 135/148 (91%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSSAIVSPP+ELVAAG RTPSPK T+ ALV RFL+TNSS VS+ +GD+V  AY+H 
Sbjct: 1   MLGVFSSAIVSPPDELVAAGCRTPSPKITADALVKRFLETNSSGVSMHIGDHVQFAYSHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
            ESPL+ RSFAVKDEIFCLFEGALDNLGSL+QQYGLAKSANEVILVIEAYKALRDRAPYP
Sbjct: 61  KESPLQPRSFAVKDEIFCLFEGALDNLGSLKQQYGLAKSANEVILVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
           PNHVVGHL G FAFIV+DKSTSTLFVAS
Sbjct: 121 PNHVVGHLIGSFAFIVFDKSTSTLFVAS 148

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100337|ref|XP_002311836.1| predicted protein [Populus trichocarpa] gi|118485817|gb|ABK94756.1| unknown [Populus trichocarpa] gi|222851656|gb|EEE89203.1| predicted protein [Populus trichocarpa]

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/148 (85%), Positives = 137/148 (92%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSSAIVSPP+ELVAAGSRTPSPK ++ ALV RF+ TNSSAVSV+VGD+  +A+TH 
Sbjct: 1   MLGVFSSAIVSPPDELVAAGSRTPSPKISADALVKRFVDTNSSAVSVRVGDDSQVAFTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NES L  RSFAVKDEI+CLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP
Sbjct: 61  NESMLLPRSFAVKDEIYCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
           PNHVVGHLSG FAFIV+DKSTSTLFVAS
Sbjct: 121 PNHVVGHLSGSFAFIVFDKSTSTLFVAS 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432548|ref|XP_002280658.1| PREDICTED: stem-specific protein TSJT1 [Vitis vinifera] gi|297736991|emb|CBI26192.3| unnamed protein product [Vitis vinifera]

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 126/148 (85%), Positives = 136/148 (91%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+I+SPP+ELVAAG RTPSPK T+ AL++RF+Q N SAVSV VGD+V LAYTH 
Sbjct: 1   MLGVFSSSIMSPPDELVAAGCRTPSPKITAEALMNRFIQGNPSAVSVHVGDHVQLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NESPL  RSFAVKDEIF LFEGALDNLGSLRQQYGLAKSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NESPLLPRSFAVKDEIFSLFEGALDNLGSLRQQYGLAKSANEVVLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
           PNHVVGHLSG FAFIV+DKSTSTLFVAS
Sbjct: 121 PNHVVGHLSGSFAFIVFDKSTSTLFVAS 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76573367|gb|ABA46788.1| unknown [Solanum tuberosum]

 Score =  258 bits (660), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 124/148 (83%), Positives = 137/148 (92%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+IVSPPEELVAAGSRTPSPK TS ALV+RF+Q NSSA+S+Q+GD V LAY+H 
Sbjct: 1   MLGVFSSSIVSPPEELVAAGSRTPSPKITSDALVNRFVQRNSSAISMQIGDFVQLAYSHS 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           NES +  RSFAVKD+IFCLFEG+LDNLGSLRQQYGLAKSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NESAVLPRSFAVKDDIFCLFEGSLDNLGSLRQQYGLAKSANEVMLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
           PNHVVGHL G FAFIV+DKSTSTLFVA+
Sbjct: 121 PNHVVGHLEGNFAFIVFDKSTSTLFVAT 148

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|257219564|gb|ACV50435.1| Al-induced protein [Jatropha curcas]

 Score =  258 bits (659), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 125/148 (84%), Positives = 135/148 (91%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+IVSPP+ELVAAGSRTPSPKTT+ ALV RF+ TN SAVS+Q+GDN  LAYTH 
Sbjct: 1   MLGVFSSSIVSPPDELVAAGSRTPSPKTTADALVKRFIDTNPSAVSLQIGDNAQLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           +ES L  RSFAVKD++FCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP
Sbjct: 61  SESLLHPRSFAVKDDVFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
            NHVVGHLSG FAFIV+D STSTLFVAS
Sbjct: 121 ANHVVGHLSGSFAFIVFDNSTSTLFVAS 148

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13958130|gb|AAK50814.1|AF363286_1 aluminium induced protein [Avicennia marina]

 Score =  258 bits (658), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 122/148 (82%), Positives = 135/148 (91%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLGVFSS+IVSPP+ELVAAGSRTPSPK  +T LV RFL+ NSSAVSV++GD+  LAYTH 
Sbjct: 1   MLGVFSSSIVSPPDELVAAGSRTPSPKVAATKLVGRFLEANSSAVSVKIGDDAQLAYTHH 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
           N+S LR RSFAVKDEIFCLFEGALDNLGSL+QQYGL KSANEV+LVIEAYKALRDRAPYP
Sbjct: 61  NQSALRPRSFAVKDEIFCLFEGALDNLGSLKQQYGLGKSANEVLLVIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
           P+HVVGHL G FAFIV+DKSTSTLFVA+
Sbjct: 121 PSHVVGHLQGNFAFIVFDKSTSTLFVAT 148

Source: Avicennia marina

Species: Avicennia marina

Genus: Avicennia

Family: Acanthaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238800460|gb|ACR56069.1| aluminum-induced protein [Cucumis hystrix]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/148 (83%), Positives = 138/148 (93%)

Query: 1   MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
           MLG+FSS+I+SPP+ELVAAGSRTPSPKTTS  L++RF+QTN SAVS+Q+GD+V LAYTH+
Sbjct: 1   MLGLFSSSIMSPPDELVAAGSRTPSPKTTSATLLNRFVQTNPSAVSLQLGDHVQLAYTHE 60

Query: 61  NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
            ES L  RSFAVKD+IFCLFEG LDNLGSLRQQYGLAKSANEVIL+IEAYKALRDRAPYP
Sbjct: 61  TESALCPRSFAVKDDIFCLFEGVLDNLGSLRQQYGLAKSANEVILMIEAYKALRDRAPYP 120

Query: 121 PNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
           P+HVVGHLSG FAFIV+DKSTSTLFVAS
Sbjct: 121 PSHVVGHLSGSFAFIVFDKSTSTLFVAS 148

Source: Cucumis hystrix

Species: Cucumis hystrix

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:2182137	234	AILP1 "AT5G19140" [Arabidopsis	0.841	0.611	0.804	4e-58
TAIR|locus:2090116	253	AT3G15450 "AT3G15450" [Arabido	0.835	0.561	0.458	3.5e-27
TAIR|locus:2170822	251	AT5G43830 "AT5G43830" [Arabido	0.841	0.569	0.426	1.8e-25
TAIR|locus:2123994	250	AT4G27450 "AT4G27450" [Arabido	0.841	0.572	0.431	4.6e-25
TAIR|locus:2084598	248	AT3G22850 "AT3G22850" [Arabido	0.794	0.544	0.417	7.8e-23

TAIR|locus:2182137 AILP1 "AT5G19140" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 115/143 (80%), Positives = 128/143 (89%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
             MLG+FS AIVSPPEELVAAGSRTPSPKTT + LV+RF++ N SAVSVQVGD V LAY+H 
Sbjct:     1 MLGIFSGAIVSPPEELVAAGSRTPSPKTTGSTLVNRFVEKNPSAVSVQVGDYVQLAYSHH 60

Query:    61 NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
             NESPLR RSF  KDEIFCLF+G+LDNLGSL+QQYGLAK+ANEV+LVIEAYK LRDRAPYP
Sbjct:    61 NESPLRPRSFGAKDEIFCLFQGSLDNLGSLKQQYGLAKNANEVLLVIEAYKTLRDRAPYP 120

Query:   121 PNHVVGHLSGYFAFIVYDKSTST 143
              NHVV HLSG FAF+V+DKSTST
Sbjct:   121 ANHVVAHLSGDFAFVVFDKSTST 143

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010044 "response to aluminum ion" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2090116 AT3G15450 "AT3G15450" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 67/146 (45%), Positives = 89/146 (60%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTP--SPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYT 58
             ML +F  A   PPEEL +  S     +PK     L D      ++A S+  GD+  LAY 
Sbjct:     1 MLAIFQKAFAHPPEELNSPASHFSGKTPKLPGETLSDFLSHHQNNAFSMNFGDSAVLAYA 60

Query:    59 HQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLA-KSANEVILVIEAYKALRDRA 117
              Q E+ LRQR F   D I+C+F G L+NL +L +QYGL+ K++NE + VIEAY+ LRDR 
Sbjct:    61 RQ-ETSLRQRLFCGLDGIYCMFLGRLNNLCTLNRQYGLSGKNSNEAMFVIEAYRTLRDRG 119

Query:   118 PYPPNHVVGHLSGYFAFIVYDKSTST 143
             PYP + V+  L G FAF+VYD  TS+
Sbjct:   120 PYPADQVLRGLEGSFAFVVYDTQTSS 145

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2170822 AT5G43830 "AT5G43830" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 61/143 (42%), Positives = 83/143 (58%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ 60
             ML VF   + + PE L +  S   +      +L   F   N ++V++  G +  +AY+  
Sbjct:     1 MLAVFEKTVANSPEALQSPHSSESAFALKDGSLATHFASVNPNSVTLNFGSSGFVAYSLD 60

Query:    61 NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYP 120
             N  P   R FAV D+IFCLF+G ++NL  L+QQYGL K  NE I+VIEAY+ LRDR PYP
Sbjct:    61 NPDPRVPRLFAVVDDIFCLFQGHIENLPFLKQQYGLNKITNEAIIVIEAYRTLRDRGPYP 120

Query:   121 PNHVVGHLSGYFAFIVYDKSTST 143
              + VV    G FAFI++D    T
Sbjct:   121 VDKVVRDFHGKFAFILFDSVKKT 143

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2123994 AT4G27450 "AT4G27450" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 63/146 (43%), Positives = 82/146 (56%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTPS--PKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYT 58
             ML +F  A   PPEEL +  S   S  PK     L D  L+   +  S+  G    LAY 
Sbjct:     1 MLAIFHEAFAHPPEELNSPASEKCSKQPKLPEETLNDFLLRYPLNTFSMSFGQAAVLAYV 60

Query:    59 HQNES-PLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRA 117
               + S  + QR F   D+I+CLF G+L+NL  L +QYGL K+ NE + VIEAY+ LRDR 
Sbjct:    61 RPSASFSIHQRLFCGFDDIYCLFFGSLNNLCQLNKQYGLTKTTNEAMFVIEAYRTLRDRG 120

Query:   118 PYPPNHVVGHLSGYFAFIVYDKSTST 143
             PYP + VV  L G F+F+VYD    +
Sbjct:   121 PYPADQVVKDLDGSFSFVVYDSKAGS 146

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

TAIR|locus:2084598 AT3G22850 "AT3G22850" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 61/146 (41%), Positives = 86/146 (58%)

Query:     1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSS-----AVSVQVGDNVTL 55
             ML +F   +   PE L   G    S      AL DRFL  + S     AV++ +G +  +
Sbjct:     1 MLAIFDKNVAKTPEAL--QGQEGGSV----CALKDRFLPNHFSSVYPGAVTINLGSSGFI 54

Query:    56 AYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRD 115
             A + + ++PL  R FAV D++FC+F+G ++N+  L+QQYGL K+A EV +VIEAY+ LRD
Sbjct:    55 ACSLEKQNPLLPRLFAVVDDMFCIFQGHIENVPILKQQYGLTKTATEVTIVIEAYRTLRD 114

Query:   116 RAPYPPNHVVGHLSGYFAFIVYDKST 141
             R PY    VV    G F F++YD ST
Sbjct:   115 RGPYSAEQVVRDFQGKFGFMLYDCST 140


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.366    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      170       145   0.00071  103 3  11 22  0.47    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  535 (57 KB)
  Total size of DFA:  115 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.11u 0.12s 16.23t   Elapsed:  00:00:00
  Total cpu time:  16.11u 0.12s 16.23t   Elapsed:  00:00:00
  Start:  Fri May 10 01:08:44 2013   End:  Fri May 10 01:08:44 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	170
pfam12481	228	pfam12481, DUF3700, Aluminium induced protein	3e-83
cd01910	224	cd01910, Wali7, This domain is present in Wali7, a	4e-82
cd00352	220	cd00352, Gn_AT_II, Glutamine amidotransferases cla	2e-05
cd00712	220	cd00712, AsnB, Glutamine amidotransferases class-I	0.001
PTZ00077	586	PTZ00077, PTZ00077, asparagine synthetase-like pro	0.002
pfam13522	130	pfam13522, GATase_6, Glutamine amidotransferase do	0.002

>gnl|CDD|221596 pfam12481, DUF3700, Aluminium induced protein

 Score =  244 bits (625), Expect = 3e-83
 Identities = 82/149 (55%), Positives = 102/149 (68%), Gaps = 2/149 (1%)

Query: 2   LGVFSSAIVSPPEELVAAGSRTPSP--KTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH 59
           L VF  ++  PPEEL +  SR PS   K     L+  F+  N +AVSV  GD+  LAY+H
Sbjct: 1   LAVFHKSVAKPPEELNSPASRLPSSAKKKGPEELLKDFVSANPNAVSVNFGDSAFLAYSH 60

Query: 60  QNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPY 119
             +SPL  R FAV D+IFCLF+G L+NL SLRQQYGL+K+ANE +LVIEAY+ LRDR PY
Sbjct: 61  SKQSPLLPRLFAVVDDIFCLFQGHLENLASLRQQYGLSKTANEAMLVIEAYRTLRDRGPY 120

Query: 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVAS 148
           P + VV  L G FAF++YD  T T+FVA 
Sbjct: 121 PADQVVKDLEGSFAFVLYDSKTGTVFVAL 149

This domain family is found in eukaryotes, and is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR. This family is related to GATase enzyme domains. Length = 228

>gnl|CDD|238891 cd01910, Wali7, This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum

 Score =  241 bits (617), Expect = 4e-82
 Identities = 94/147 (63%), Positives = 112/147 (76%), Gaps = 2/147 (1%)

Query: 2   LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQN 61
           L VFS A+  PPEELV+AGSRTP    T+  L+ RFL  N SAV V +G    LAY+H N
Sbjct: 1   LAVFSKAVAKPPEELVSAGSRTP--AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHN 58

Query: 62  ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPP 121
           +SPL  R FAVKD+IFCLF+G LDNLGSL+QQYGL+K+ANE +LVIEAY+ LRDR PYP 
Sbjct: 59  QSPLHPRLFAVKDDIFCLFQGHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPA 118

Query: 122 NHVVGHLSGYFAFIVYDKSTSTLFVAS 148
           + VV  L G FAF++YDK TST+FVAS
Sbjct: 119 DQVVKDLEGSFAFVLYDKKTSTVFVAS 145

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits. Length = 224

>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase)

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 6/80 (7%)

Query: 74  DEIFCLFEGALDNLGSLRQQYGLAKSAN------EVILVIEAYKALRDRAPYPPNHVVGH 127
             I  +  G + N   LR++              EVIL +                 +  
Sbjct: 96  GRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKR 155

Query: 128 LSGYFAFIVYDKSTSTLFVA 147
           L G FAF ++D     LF A
Sbjct: 156 LDGPFAFALWDGKPDRLFAA 175

The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the formation of the beta-lactam ring in the beta-lactamase inhibitor clavulanic acid. GltS synthesizes L-glutamate from 2-oxoglutarate and L-glutamine. These enzymes are generally dimers, but GPATase also exists as a homotetramer. Length = 220

>gnl|CDD|238364 cd00712, AsnB, Glutamine amidotransferases class-II (GATase) asparagine synthase_B type

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 15/74 (20%)

Query: 80  FEGALDNLGSLRQQYGLA------KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFA 133
           F G + N   LR +           S  EVIL    Y+   +         +  L+G FA
Sbjct: 72  FNGEIYNYRELRAELEALGHRFRTHSDTEVIL--HLYEEWGEDC-------LERLNGMFA 122

Query: 134 FIVYDKSTSTLFVA 147
           F ++DK    LF+A
Sbjct: 123 FALWDKRKRRLFLA 136

Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia. Length = 220

>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein; Provisional

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 119 YPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147
           Y P     HL G FA ++YD  T+T F A
Sbjct: 116 YGPKDFWNHLDGMFATVIYDMKTNTFFAA 144

Length = 586

>gnl|CDD|222195 pfam13522, GATase_6, Glutamine amidotransferase domain

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 15/83 (18%)

Query: 80  FEGALDNLGSLRQQYGL------AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFA 133
             G + N G LR++         ++S +EV+L    Y+   +         +  L G FA
Sbjct: 43  HNGEIYNFGELREELPAKGHAFRSRSDSEVLL--ALYEEWGE-------DALERLRGMFA 93

Query: 134 FIVYDKSTSTLFVASVLAASHLL 156
           F ++DK   TLF+A        L
Sbjct: 94  FAIWDKRRKTLFLARDRLGIKPL 116

This domain is a class-II glutamine amidotransferase domain found in a variety of enzymes, such as asparagine synthetase and glutamine--fructose-6-phosphate transaminase. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
PF12481	228	DUF3700: Aluminium induced protein ; InterPro: IPR	100.0
cd01910	224	Wali7 This domain is present in Wali7, a protein o	100.0
cd01909	199	betaLS_CarA_N Glutamine amidotransferases class-II	99.94
COG0367	542	AsnB Asparagine synthase (glutamine-hydrolyzing) [	99.93
PTZ00077	586	asparagine synthetase-like protein; Provisional	99.93
PRK09431	554	asnB asparagine synthetase B; Provisional	99.92
TIGR01536	467	asn_synth_AEB asparagine synthase (glutamine-hydro	99.92
PF13537	125	GATase_7: Glutamine amidotransferase domain; PDB:	99.92
PLN02549	578	asparagine synthase (glutamine-hydrolyzing)	99.92
TIGR03104	589	trio_amidotrans asparagine synthase family amidotr	99.92
cd03766	181	Gn_AT_II_novel Gn_AT_II_novel. This asparagine syn	99.9
TIGR03108	628	eps_aminotran_1 exosortase 1 system-associated ami	99.9
cd00712	220	AsnB Glutamine amidotransferases class-II (GATase)	99.88
KOG0571	543	consensus Asparagine synthase (glutamine-hydrolyzi	99.81
cd00714	215	GFAT Glutamine amidotransferases class-II (Gn-AT)_	99.79
PRK08525	445	amidophosphoribosyltransferase; Provisional	99.77
cd00352	220	Gn_AT_II Glutamine amidotransferases class-II (GAT	99.76
PF13522	133	GATase_6: Glutamine amidotransferase domain	99.76
PRK06388	474	amidophosphoribosyltransferase; Provisional	99.71
PRK07631	475	amidophosphoribosyltransferase; Provisional	99.71
cd01907	249	GlxB Glutamine amidotransferases class-II (Gn-AT)_	99.7
PRK09123	479	amidophosphoribosyltransferase; Provisional	99.7
PRK08341	442	amidophosphoribosyltransferase; Provisional	99.69
cd00715	252	GPATase_N Glutamine amidotransferases class-II (GN	99.69
PRK07349	500	amidophosphoribosyltransferase; Provisional	99.69
TIGR01135	607	glmS glucosamine--fructose-6-phosphate aminotransf	99.69
PRK00331	604	glucosamine--fructose-6-phosphate aminotransferase	99.69
PRK07272	484	amidophosphoribosyltransferase; Provisional	99.67
PRK07847	510	amidophosphoribosyltransferase; Provisional	99.65
PRK06781	471	amidophosphoribosyltransferase; Provisional	99.64
PLN02440	479	amidophosphoribosyltransferase	99.63
PTZ00295	640	glucosamine-fructose-6-phosphate aminotransferase;	99.62
PRK09246	501	amidophosphoribosyltransferase; Provisional	99.61
PRK05793	469	amidophosphoribosyltransferase; Provisional	99.6
TIGR01134	442	purF amidophosphoribosyltransferase. Alternate nam	99.55
PTZ00394	670	glucosamine-fructose-6-phosphate aminotransferase;	99.55
PLN02981	680	glucosamine:fructose-6-phosphate aminotransferase	99.46
COG0449	597	GlmS Glucosamine 6-phosphate synthetase, contains	98.89
KOG0573	520	consensus Asparagine synthase [Amino acid transpor	98.8
COG0034	470	PurF Glutamine phosphoribosylpyrophosphate amidotr	98.73
cd00713	413	GltS Glutamine amidotransferases class-II (Gn-AT),	98.55
cd01908	257	YafJ Glutamine amidotransferases class-II (Gn-AT)_	98.4
KOG0572	474	consensus Glutamine phosphoribosylpyrophosphate am	98.37
PF00310	361	GATase_2: Glutamine amidotransferases class-II; In	98.1
TIGR03442	251	conserved hypothetical protein TIGR03442. Members	97.81
KOG1268	670	consensus Glucosamine 6-phosphate synthetases, con	97.34
PF09147	201	DUF1933: Domain of unknown function (DUF1933); Int	95.82
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	94.05
PF13230	271	GATase_4: Glutamine amidotransferases class-II; PD	91.19

>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length

Probab=100.00  E-value=7.1e-62  Score=408.40  Aligned_cols=159  Identities=48%  Similarity=0.781  Sum_probs=154.3

Q ss_pred             cccccccccCCccccccCCCCCCC--CCCChHHHHHHhhccCCCceEEEeCCceeeeEecCCCCCcccceecccCcEEEE
Q 030864            2 LGVFSSAIVSPPEELVAAGSRTPS--PKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCL   79 (170)
Q Consensus         2 Lavf~~~v~~~P~el~sp~~~~~~--~~~~~~~l~~~f~~~~p~a~~v~~g~~~~lAy~~~~q~~~~~r~f~~~~~i~~v   79 (170)
                      ||||+|+||++||||+||++..++  ++|+++||+++|+++||+||+|+||+++.|||++++|++++||+|++.|||||+
T Consensus         1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p~a~s~~~g~~~~lAys~~~~~~l~pR~F~~~DdIfCi   80 (228)
T PF12481_consen    1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANPNAFSMNFGDSAALAYSHSNQSSLHPRLFAGVDDIFCI   80 (228)
T ss_pred             CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCCCeEEEEcCCCEEEEEecCCCCccccccccccCCEEEE
Confidence            899999999999999999976443  699999999999999999999999999999999999999999999999999999


Q ss_pred             EceeecCHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeE
Q 030864           80 FEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSL  159 (170)
Q Consensus        80 FNGEIyN~~eLr~~~g~~ks~sE~~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~  159 (170)
                      |.|.|.|+..||||||++|++||+++||||||+||||||||++|||++|+|.|||||||+++++||+|||++|..|||-+
T Consensus        81 F~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWG  160 (228)
T PF12481_consen   81 FLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWG  160 (228)
T ss_pred             EecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999955


Q ss_pred             E
Q 030864          160 K  160 (170)
Q Consensus       160 ~  160 (170)
                      .
T Consensus       161 i  161 (228)
T PF12481_consen  161 I  161 (228)
T ss_pred             E
Confidence            4

There are two conserved sequence motifs: YGL and LRDR.

>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum

Probab=100.00  E-value=1.1e-57  Score=383.82  Aligned_cols=157  Identities=61%  Similarity=0.942  Sum_probs=151.2

Q ss_pred             cccccccccCCccccccCCCCCCCCCCChHHHHHHhhccCCCceEEEeCCceeeeEecCCCCCcccceecccCcEEEEEc
Q 030864            2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFE   81 (170)
Q Consensus         2 Lavf~~~v~~~P~el~sp~~~~~~~~~~~~~l~~~f~~~~p~a~~v~~g~~~~lAy~~~~q~~~~~r~f~~~~~i~~vFN   81 (170)
                      ||||+|+||++||||+||++.+.  ++++++|+++|+++||++++|++|+++.|||++++|++++||+|+++++++|+||
T Consensus         1 laif~~~~~~~p~el~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfn   78 (224)
T cd01910           1 LAVFSKAVAKPPEELVSAGSRTP--AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQ   78 (224)
T ss_pred             CcccccccCCCChHHcCCCcccc--CCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEE
Confidence            89999999999999999987433  6788899999999999999999999999999999999999999999999999999


Q ss_pred             eeecCHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864           82 GALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus        82 GEIyN~~eLr~~~g~~ks~sE~~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~  160 (170)
                      |||||+.+||++||+.++++|+++||++|++||||||||+++++++|+|||||||||++++++|+|||++|+|||||.+
T Consensus        79 GeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~  157 (224)
T cd01910          79 GHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGI  157 (224)
T ss_pred             eEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEE
Confidence            9999999999999988999999999999999999999999999999999999999999999999999999999999975

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.

>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type

Probab=99.94  E-value=6.1e-27  Score=193.71  Aligned_cols=81  Identities=19%  Similarity=0.155  Sum_probs=73.1

Q ss_pred             ccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEE
Q 030864           72 VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA  147 (170)
Q Consensus        72 ~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~A  147 (170)
                      ..++++++|||||||+.+||+++   |. .++.+|+|+|+++|++   ||    .+++++|+|||||+|||++ ++|++|
T Consensus        48 ~~~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~---~G----~~~l~~L~G~FAfai~D~~-~~L~la  119 (199)
T cd01909          48 RSETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTR---LG----LHAFRLAEGDFCFFIEDGN-GRLTLA  119 (199)
T ss_pred             eCCCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHH---Hh----HHHHHHcCEEEEEEEEcCC-CEEEEE
Confidence            44689999999999999999997   33 3889999999999996   56    4799999999999999999 999999


Q ss_pred             eeCCCCcceeeEE
Q 030864          148 SVLAASHLLLSLK  160 (170)
Q Consensus       148 RDr~G~kPLY~~~  160 (170)
                      |||+|+|||||..
T Consensus       120 RDr~GikPLYy~~  132 (199)
T cd01909         120 TDHAGSVPVYLVQ  132 (199)
T ss_pred             ECCCCCcCeEEEE
Confidence            9999999999863

Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (

>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]

Probab=99.93  E-value=8e-26  Score=209.18  Aligned_cols=110  Identities=19%  Similarity=0.318  Sum_probs=89.2

Q ss_pred             CCceEEEe------CCceeeeEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHhC---C-CCCCchHHHHHHHHH
Q 030864           42 SSAVSVQV------GDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYK  111 (170)
Q Consensus        42 p~a~~v~~------g~~~~lAy~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g---~-~ks~sE~~vii~aY~  111 (170)
                      ||...+-.      |+ ..|+++...+ ..||+. ...++++++|||||||+.|||+++.   + .+|++|+|||+++|+
T Consensus        32 PD~~g~~~~~~~~~gh-~rL~i~d~~~-g~QP~~-~~~~~~~l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEvil~~y~  108 (542)
T COG0367          32 PDDSGVWISLNALLGH-RRLSIVDLSG-GRQPMI-KEGGKYAIVYNGEIYNVEELRKELREAGYEFRTYSDTEVILTLYE  108 (542)
T ss_pred             CCccccEecCCceeee-eEEEEecccc-CCCCcc-cCCCcEEEEECCEeeeHHHHHHHHHhcCceeccccchHHHHHHHH
Confidence            87655544      44 6677776433 344432 2557799999999999999999874   4 489999999999999


Q ss_pred             HhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEEE
Q 030864          112 ALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKV  161 (170)
Q Consensus       112 ~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~~  161 (170)
                      +   ||    .+|+++|+|||||||||..+++||+|||++|+|||||-.-
T Consensus       109 ~---~g----~~~~~~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~  151 (542)
T COG0367         109 E---WG----EDCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSK  151 (542)
T ss_pred             H---HH----HHHHHHhccceEEEEEECCCCEEEEEecCCCccccEEEec
Confidence            6   45    3699999999999999999999999999999999998653

>PTZ00077 asparagine synthetase-like protein; Provisional

Probab=99.93  E-value=1.1e-25  Score=210.00  Aligned_cols=100  Identities=22%  Similarity=0.283  Sum_probs=83.7

Q ss_pred             eeeeEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCcccccccC
Q 030864           53 VTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHL  128 (170)
Q Consensus        53 ~~lAy~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~~~rdrGpyp~~~~l~~L  128 (170)
                      .+||++... ...|| +++..++++++|||||||+.+||+++   |+. ++.||+|+|+++|++   ||+   ++++++|
T Consensus        54 ~RLsIvd~~-~g~QP-~~~~d~~~~lv~NGEIYN~~eLr~~L~~~g~~f~t~sD~Evil~ly~~---~G~---~~~l~~L  125 (586)
T PTZ00077         54 ERLAIVDLS-DGKQP-LLDDDETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEIIGHLYKE---YGP---KDFWNHL  125 (586)
T ss_pred             ccceecCCC-CCCCC-cCCCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHH---hCH---HHHHHhc
Confidence            567776532 23344 34566899999999999999999997   443 899999999999996   552   3799999


Q ss_pred             CceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864          129 SGYFAFIVYDKSTSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus       129 ~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~  160 (170)
                      +|||||+|||.+++++++|||++|+|||||.+
T Consensus       126 ~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~  157 (586)
T PTZ00077        126 DGMFATVIYDMKTNTFFAARDHIGIIPLYIGY  157 (586)
T ss_pred             CCCEEEEEEECCCCEEEEEECCCCCcCeEEEE
Confidence            99999999999999999999999999999964

>PRK09431 asnB asparagine synthetase B; Provisional

Probab=99.92  E-value=4.6e-25  Score=204.48  Aligned_cols=111  Identities=16%  Similarity=0.253  Sum_probs=89.8

Q ss_pred             CCceEEEeCCc-----eeeeEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHhC--C-CCCCchHHHHHHHHHHh
Q 030864           42 SSAVSVQVGDN-----VTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG--L-AKSANEVILVIEAYKAL  113 (170)
Q Consensus        42 p~a~~v~~g~~-----~~lAy~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g--~-~ks~sE~~vii~aY~~~  113 (170)
                      ||...+...+.     .+||+++. ....+| +++..++++++|||||||+.+||+++.  + .++.||+|||+++|++ 
T Consensus        33 PD~~g~~~~~~~~lgh~RLsIid~-~~g~QP-~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~~f~t~sD~Evil~ly~~-  109 (554)
T PRK09431         33 PDWSGIYASDNAILGHERLSIVDV-NGGAQP-LYNEDGTHVLAVNGEIYNHQELRAELGDKYAFQTGSDCEVILALYQE-  109 (554)
T ss_pred             CCcCCEEEeCCeEEEEEEeeecCC-CCCCCC-CCcCCCCEEEEEEEEEecHHHHHHHHhccCCcCCCCHHHHHHHHHHH-
Confidence            88777654322     56677653 223333 345668999999999999999999974  3 3789999999999996 


Q ss_pred             hhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEEE
Q 030864          114 RDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKV  161 (170)
Q Consensus       114 rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~~  161 (170)
                        ||    .+++++|+|||||||||.+++++++|||++|+|||||.+.
T Consensus       110 --~G----~~~~~~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~  151 (554)
T PRK09431        110 --KG----PDFLDDLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYD  151 (554)
T ss_pred             --HH----HHHHHhCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEe
Confidence              55    4799999999999999999999999999999999999753

>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing)

Probab=99.92  E-value=5.2e-25  Score=197.58  Aligned_cols=109  Identities=20%  Similarity=0.339  Sum_probs=89.9

Q ss_pred             CCceEEE-------eCCceeeeEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHH
Q 030864           42 SSAVSVQ-------VGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAY  110 (170)
Q Consensus        42 p~a~~v~-------~g~~~~lAy~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY  110 (170)
                      ||+..+-       +|+ .+|++++... ..+| +.+..++++++|||||||+.+||+++   |+. ++.||+|+|+++|
T Consensus        30 PD~~g~~~~~~~~~lgh-~rl~i~d~~~-~~qP-~~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~~~~D~e~il~~y  106 (467)
T TIGR01536        30 PDASGIEYKDGNAILGH-RRLAIIDLSG-GAQP-MSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQTDSDTEVILHLY  106 (467)
T ss_pred             CCcCCcEEccCCEEEEE-EEeEEeCCCC-CCCe-eECCCCCEEEEEeeEEcCHHHHHHHHHhcCCccCCCCHHHHHHHHH
Confidence            7765543       444 6777776532 3566 44566789999999999999999987   443 7899999999999


Q ss_pred             HHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864          111 KALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus       111 ~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~  160 (170)
                      ++|   |    .+++++|+|||||+|||..++++++|||++|+|||||..
T Consensus       107 ~~~---g----~~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~  149 (467)
T TIGR01536       107 EEW---G----EECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAY  149 (467)
T ss_pred             HHH---H----HHHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEE
Confidence            974   4    579999999999999999999999999999999999864

This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.

>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A

Probab=99.92  E-value=4.2e-25  Score=167.33  Aligned_cols=93  Identities=23%  Similarity=0.354  Sum_probs=60.7

Q ss_pred             cccceecccCcEEEEEceeecCHHHHHHHhCC----CCCCchHHHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCC
Q 030864           65 LRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKS  140 (170)
Q Consensus        65 ~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g~----~ks~sE~~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~  140 (170)
                      .+|...+..++++++|||||||+.+|++++..    .++.+|+++++++|+.+.+||    .+++++|+|+|||++||++
T Consensus        13 ~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~----~~~~~~l~G~fa~v~~d~~   88 (125)
T PF13537_consen   13 AQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWG----EDFLKRLDGPFAFVIWDKD   88 (125)
T ss_dssp             ------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HG----GGGGGT--EEEEEEEEETT
T ss_pred             ccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHH----HHHHHhCCceEEEEEEeCC
Confidence            34432246689999999999999999999843    378999999999999766778    5899999999999999999


Q ss_pred             CCeEEEEeeCCCCcceeeEEE
Q 030864          141 TSTLFVASVLAASHLLLSLKV  161 (170)
Q Consensus       141 ~~~lf~ARDr~G~kPLY~~~~  161 (170)
                      ++++|+|||+.|+|||||.+.
T Consensus        89 ~~~l~~~rD~~G~rpLyy~~~  109 (125)
T PF13537_consen   89 KKRLFLARDRFGIRPLYYGRT  109 (125)
T ss_dssp             E--EEEEE-TT--S--EEEEE
T ss_pred             CcEEEEEECCCCCCCeEEEEe
Confidence            999999999999999998765

>PLN02549 asparagine synthase (glutamine-hydrolyzing)

Probab=99.92  E-value=1.1e-24  Score=203.10  Aligned_cols=111  Identities=16%  Similarity=0.206  Sum_probs=90.0

Q ss_pred             CCceEEEeCCc-----eeeeEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHhC-C-CCCCchHHHHHHHHHHhh
Q 030864           42 SSAVSVQVGDN-----VTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG-L-AKSANEVILVIEAYKALR  114 (170)
Q Consensus        42 p~a~~v~~g~~-----~~lAy~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g-~-~ks~sE~~vii~aY~~~r  114 (170)
                      ||+..+...+.     .+|+++.. ....|| +++..++++++|||||||+.+||+++. + .+|.||+|||+++|++  
T Consensus        33 PD~~g~~~~~~~~Lgh~RLsI~d~-~~g~QP-~~~~~~~~~lv~NGEIyN~~eLr~~L~~~~f~t~sD~Evil~ly~~--  108 (578)
T PLN02549         33 PDWSGLYGNEDCYLAHERLAIMDP-ESGDQP-LYNEDKTIVVTANGEIYNHKELREKLKLHKFRTGSDCEVIAHLYEE--  108 (578)
T ss_pred             CCccCEEEeCCeEEEEeeeeEeCC-CCCCCC-cCcCCCCEEEEEEEEEEcHHHHHHHHHhCCCCCCCHHHHHHHHHHH--
Confidence            88766654322     45566553 334445 345667899999999999999999985 3 4899999999999996  


Q ss_pred             hcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEEE
Q 030864          115 DRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKV  161 (170)
Q Consensus       115 drGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~~  161 (170)
                       ||    .+++++|+|||||||||..++++++|||++|+|||||.+.
T Consensus       109 -~G----~~~~~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~  150 (578)
T PLN02549        109 -HG----EEFVDMLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWG  150 (578)
T ss_pred             -HH----HHHHHhCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEe
Confidence             45    4799999999999999999999999999999999999753

>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase

Probab=99.92  E-value=9.9e-25  Score=202.70  Aligned_cols=110  Identities=21%  Similarity=0.353  Sum_probs=89.8

Q ss_pred             CCceEEE------eCCceeeeEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHH
Q 030864           42 SSAVSVQ------VGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYK  111 (170)
Q Consensus        42 p~a~~v~------~g~~~~lAy~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~  111 (170)
                      ||+..+-      +|+ ++|++++......+| +.+..++++++|||||||+.|||+++   |+. ++.||+|+|+++|+
T Consensus        32 PD~~g~~~~~~~~lgh-~rl~i~~~~~~~~QP-~~~~~~~~~~v~nGeiyN~~eL~~~l~~~g~~f~~~sD~Evil~~y~  109 (589)
T TIGR03104        32 PDAGGVHAQGPVALGH-RRLKIIDLSEASQQP-MVDAELGLALVFNGCIYNYRELRAELEALGYRFFSDGDTEVILKAYH  109 (589)
T ss_pred             CCcCCcEecCCEEEEE-EeeEecCCCcCCCCC-eECCCCCEEEEECCEecCHHHHHHHHHhcCCcccCCCHHHHHHHHHH
Confidence            8665543      444 566666543344555 34566789999999999999999986   553 88999999999999


Q ss_pred             HhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864          112 ALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus       112 ~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~  160 (170)
                      .   ||    .+++++|+|||||+|||..++++++||||+|+|||||..
T Consensus       110 ~---~G----~~~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~  151 (589)
T TIGR03104       110 A---WG----RDCVSRFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAE  151 (589)
T ss_pred             H---HH----HHHHHHhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEE
Confidence            6   45    479999999999999999999999999999999999853

Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.

>cd03766 Gn_AT_II_novel Gn_AT_II_novel

Probab=99.90  E-value=1.3e-23  Score=169.85  Aligned_cols=121  Identities=17%  Similarity=0.207  Sum_probs=87.8

Q ss_pred             HHHHHHhhccCCCceEEE----------eCCceeeeEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHhCCCCCC
Q 030864           31 TALVDRFLQTNSSAVSVQ----------VGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSA  100 (170)
Q Consensus        31 ~~l~~~f~~~~p~a~~v~----------~g~~~~lAy~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g~~ks~  100 (170)
                      .++++..+-+=||+..+.          +++ ..|++... ....||-. ...++++++|||||||+.+||+      ++
T Consensus        22 ~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~-~rL~i~~~-~~~~QP~~-~~~~~~~lv~NGeIyN~~~l~~------s~   92 (181)
T cd03766          22 EELLPNLRNRGPDYLSTRQLSVTNWTLLFTS-SVLSLRGD-HVTRQPLV-DQSTGNVLQWNGELYNIDGVED------EE   92 (181)
T ss_pred             HHHHHHHHhcCCCccCCEEeeccccEEEEEe-eEEEecCC-CCCCCCCE-eCCCCEEEEECCEEECcccccC------CC
Confidence            345555544448764332          332 56667652 12233322 2336899999999999999987      78


Q ss_pred             chHHHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEEE
Q 030864          101 NEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKV  161 (170)
Q Consensus       101 sE~~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~~  161 (170)
                      ||+|+|+++|+++++. .-...+++++|+|+|||||||..++++++|||++|+|||||.+.
T Consensus        93 sDtEvi~~l~~~~g~~-~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~  152 (181)
T cd03766          93 NDTEVIFELLANCSSE-SQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLD  152 (181)
T ss_pred             CHHHHHHHHHHHHhhh-HHHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCCcCcEEEee
Confidence            9999999999964410 00012699999999999999999999999999999999999875

This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet

>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1

Probab=99.90  E-value=1.5e-23  Score=194.61  Aligned_cols=109  Identities=19%  Similarity=0.354  Sum_probs=89.0

Q ss_pred             CCceEEE------eCCceeeeEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHH
Q 030864           42 SSAVSVQ------VGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYK  111 (170)
Q Consensus        42 p~a~~v~------~g~~~~lAy~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~  111 (170)
                      ||+..+-      +|+ +.+++++. ....+| +.+..++++++|||||||+.|||+++   |.. ++.||+|+|+++|+
T Consensus        33 pD~~g~~~~~~~~lgh-~rl~i~d~-~~~~qP-~~~~~~~~~lv~nGei~N~~eL~~~l~~~g~~~~~~sD~Evi~~~~~  109 (628)
T TIGR03108        33 PDGGGVHVEPGIGLGH-RRLSIIDL-SGGQQP-LFNEDGSVVVVFNGEIYNFQELVAELQALGHVFRTRSDTEVIVHAWE  109 (628)
T ss_pred             CCccCeEeeCCEEEEE-EeeeecCC-CCCCCC-cCcCCCCEEEEECCeECCHHHHHHHHHhcCCccCCCChHHHHHHHHH
Confidence            8766544      444 56666653 233444 33566899999999999999999986   553 78999999999999


Q ss_pred             HhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864          112 ALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus       112 ~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~  160 (170)
                      +   ||    .+++++|+|||||+|||..++++++|||++|+|||||..
T Consensus       110 ~---~g----~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~  151 (628)
T TIGR03108       110 E---WG----EACVERFRGMFAFALWDRNQETLFLARDRLGIKPLYYAL  151 (628)
T ss_pred             H---HH----HHHHHHcCCCEEEEEEECCCCEEEEEECCCCCcceEEEE
Confidence            7   44    479999999999999999999999999999999999863

The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.

>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type

Probab=99.88  E-value=3.1e-22  Score=163.60  Aligned_cols=119  Identities=17%  Similarity=0.331  Sum_probs=90.7

Q ss_pred             HHHHhhccCCCceEEEeCCceee-----eEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHhCC----CCCCchH
Q 030864           33 LVDRFLQTNSSAVSVQVGDNVTL-----AYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL----AKSANEV  103 (170)
Q Consensus        33 l~~~f~~~~p~a~~v~~g~~~~l-----Ay~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g~----~ks~sE~  103 (170)
                      ++....-+-||+..+...+...+     +..... .-.+| +....+++++++||||||+.+|+++++.    .++.||+
T Consensus        22 ~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~-~~~qP-~~~~~~~~~~~~nG~i~N~~~L~~~l~~~~~~~~~~sD~   99 (220)
T cd00712          22 MLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLS-GGAQP-MVSEDGRLVLVFNGEIYNYRELRAELEALGHRFRTHSDT   99 (220)
T ss_pred             HHHHHhccCCCCCCEEEECCEEEEEEeeeecCcc-cCCCC-eEeCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCChH
Confidence            33333333488777666443444     333322 23344 2334579999999999999999999743    3789999


Q ss_pred             HHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864          104 ILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus       104 ~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~  160 (170)
                      |+|+++|++   ||    .+++++|+|+|||++||.+++++++|||+.|.+||||..
T Consensus       100 e~l~~~~~~---~g----~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~  149 (220)
T cd00712         100 EVILHLYEE---WG----EDCLERLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGR  149 (220)
T ss_pred             HHHHHHHHH---Hh----HHHHHHhhheEEEEEEECCCCEEEEEECCCCCEeeEEEE
Confidence            999999996   45    579999999999999999999999999999999999864

Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.

>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]

Probab=99.81  E-value=3e-20  Score=169.69  Aligned_cols=108  Identities=17%  Similarity=0.215  Sum_probs=91.0

Q ss_pred             EeCCceeeeEecCCCCCcccceecccCcEEEEEceeecCHHHHHHHhC-CC-CCCchHHHHHHHHHHhhhcCCCCccccc
Q 030864           48 QVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG-LA-KSANEVILVIEAYKALRDRAPYPPNHVV  125 (170)
Q Consensus        48 ~~g~~~~lAy~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g-~~-ks~sE~~vii~aY~~~rdrGpyp~~~~l  125 (170)
                      .|++ .+||++.. .+.-+| +++..+.+.|..||||||+++||+.+. +. +|.+|+|+||++|++.|      ..++.
T Consensus        44 ~l~h-eRLAIvdp-~sg~QP-i~~~~~~~~~~vNGEIYNH~~Lr~~~~~~~~~T~sDcEvIi~lY~khg------~~~~~  114 (543)
T KOG0571|consen   44 ILGH-ERLAIVDP-TSGAQP-IVGEDGTYVVTVNGEIYNHKKLREHCKDFEFQTGSDCEVIIHLYEKHG------GEQAI  114 (543)
T ss_pred             cccc-cceeEecC-CcCCcc-cccCCCcEEEEECceeccHHHHHHHhhhcccccCCCceeeeehHhhcC------chhHH
Confidence            4566 78999764 444555 667888999999999999999999875 53 77788888999999732      36899


Q ss_pred             ccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEEEccc
Q 030864          126 GHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKVVSS  164 (170)
Q Consensus       126 ~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~~~~~  164 (170)
                      ..|+|||||+++|.+..++.+|||+.|++|||+++-+.+
T Consensus       115 ~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~g  153 (543)
T KOG0571|consen  115 CMLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDG  153 (543)
T ss_pred             HHhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCC
Confidence            999999999999999999999999999999999876543

>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type

Probab=99.79  E-value=1.1e-18  Score=143.60  Aligned_cols=85  Identities=18%  Similarity=0.254  Sum_probs=71.3

Q ss_pred             cCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc---ccccccCCceEEEEEEeCCCC-eE
Q 030864           73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGYFAFIVYDKSTS-TL  144 (170)
Q Consensus        73 ~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~~~rdrGpyp~---~~~l~~L~GmFAFviyD~~~~-~l  144 (170)
                      .+++.+++||+|||+.+||+++   |.. +++||+|+|+++|..+.+.|+-+.   .+++++|+|+|||++||+.++ ++
T Consensus        91 ~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~fa~~~~d~~~~~~l  170 (215)
T cd00714          91 DGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGAYALAVISKDEPDEI  170 (215)
T ss_pred             CCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccceEEEEEEeCCCCEE
Confidence            4689999999999999999987   553 889999999999998665442111   168999999999999999875 99


Q ss_pred             EEEeeCCCCcceeeEE
Q 030864          145 FVASVLAASHLLLSLK  160 (170)
Q Consensus       145 f~ARDr~G~kPLY~~~  160 (170)
                      ++|||   .||||+..
T Consensus       171 ~~~RD---~~PL~~~~  183 (215)
T cd00714         171 VAARN---GSPLVIGI  183 (215)
T ss_pred             EEEEC---CCCcEEEE
Confidence            99999   59999874

This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.

>PRK08525 amidophosphoribosyltransferase; Provisional

Probab=99.77  E-value=1.8e-18  Score=157.12  Aligned_cols=110  Identities=12%  Similarity=0.120  Sum_probs=81.3

Q ss_pred             EEeCCceeeeEecCC-CCCccccee-cccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCCC
Q 030864           47 VQVGDNVTLAYTHQN-ESPLRQRSF-AVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYP  120 (170)
Q Consensus        47 v~~g~~~~lAy~~~~-q~~~~~r~f-~~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpyp  120 (170)
                      +-+|+ .++|..... ..-.||-.. +..++++++|||+|||+.+||+++   |. .+|+||+|+|+++|..+++ +...
T Consensus        67 ~~iGH-~R~at~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~-~~~~  144 (445)
T PRK08525         67 IAIGH-NRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKK-ESLK  144 (445)
T ss_pred             EEEee-cccccCCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcC-CCHH
Confidence            44555 566654321 122445221 145789999999999999999986   55 3889999999999986431 1000


Q ss_pred             --cccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864          121 --PNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus       121 --~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~  160 (170)
                        ..+++++|+|+|||+++|.  ++++++||++|+||||++.
T Consensus       145 ea~~~~~~~L~G~fa~vi~~~--~~l~~~RD~~GirPL~~g~  184 (445)
T PRK08525        145 DRIIEALKKIIGAYCLVLLSR--SKMFAIRDPHGVRPLSLGR  184 (445)
T ss_pred             HHHHHHHHhcCCceEEEEEeC--CEEEEEECCCCCCCeEEEE
Confidence              1258999999999999995  7899999999999999974

>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase)

Probab=99.76  E-value=6.7e-18  Score=134.23  Aligned_cols=96  Identities=17%  Similarity=0.191  Sum_probs=77.6

Q ss_pred             cccceecccCcEEEEEceeecCHHHHHHHhC---C-CCCCchHHHHHHHHHHhhhcCC--CCcccccccCCceEEEEEEe
Q 030864           65 LRQRSFAVKDEIFCLFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYKALRDRAP--YPPNHVVGHLSGYFAFIVYD  138 (170)
Q Consensus        65 ~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g---~-~ks~sE~~vii~aY~~~rdrGp--yp~~~~l~~L~GmFAFviyD  138 (170)
                      .||-.... +++++++||+|||+.+|++++.   . .++.||+|+|.++|..+++.+.  --..+++++++|.|||+|||
T Consensus        88 ~hPf~~~~-~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d  166 (220)
T cd00352          88 AQPFRSED-GRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLDGPFAFALWD  166 (220)
T ss_pred             CCCcCcCC-CCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHHHHHHHHHHhCCccEEEEEEE
Confidence            45533223 6999999999999999999864   2 4789999999999997553220  00136899999999999999


Q ss_pred             CCCCeEEEEeeCCCCcceeeEEE
Q 030864          139 KSTSTLFVASVLAASHLLLSLKV  161 (170)
Q Consensus       139 ~~~~~lf~ARDr~G~kPLY~~~~  161 (170)
                      ..+++++++||+.|.+|||+...
T Consensus       167 ~~~~~l~~~rd~~G~~pL~~~~~  189 (220)
T cd00352         167 GKPDRLFAARDRFGIRPLYYGIT  189 (220)
T ss_pred             CCCCEEEEEECCCCCCCeEEEEe
Confidence            99999999999999999998764

The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format

>PF13522 GATase_6: Glutamine amidotransferase domain

Probab=99.76  E-value=4.9e-18  Score=130.67  Aligned_cols=105  Identities=23%  Similarity=0.290  Sum_probs=82.8

Q ss_pred             EEeCCceeeeEecCC-CCCcccceecccCcEEEEEceeecCHHHHHHHhC---C-CCCCchHHHHHHHHHHhhhcCCCCc
Q 030864           47 VQVGDNVTLAYTHQN-ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYKALRDRAPYPP  121 (170)
Q Consensus        47 v~~g~~~~lAy~~~~-q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g---~-~ks~sE~~vii~aY~~~rdrGpyp~  121 (170)
                      +-+|+ .++|-.... ...-||= -...+++++++||+|+|+.+||++++   . .++.||+|+|.+++.+   +|    
T Consensus        14 ~~lgH-~R~AT~G~~~~~~~hPf-~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li~~---~g----   84 (133)
T PF13522_consen   14 AALGH-TRYATVGSPTEENNHPF-SNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALIHR---WG----   84 (133)
T ss_pred             EEEEE-eecCCCCCCCCcCCCCC-cCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHHHH---HH----
Confidence            44455 455554433 1112552 23557899999999999999999974   3 3789999999999964   44    


Q ss_pred             ccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864          122 NHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus       122 ~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~  160 (170)
                      .+++++|+|+|+|++||...++++++||+.|++|||+..
T Consensus        85 ~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~  123 (133)
T PF13522_consen   85 EEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGR  123 (133)
T ss_pred             HHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEE
Confidence            578999999999999999999999999999999999765

>PRK06388 amidophosphoribosyltransferase; Provisional

Probab=99.71  E-value=6.1e-17  Score=148.71  Aligned_cols=111  Identities=14%  Similarity=0.099  Sum_probs=81.9

Q ss_pred             EEeCCceeeeEecCC-CCCccccee-cccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhh-hcCCC
Q 030864           47 VQVGDNVTLAYTHQN-ESPLRQRSF-AVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALR-DRAPY  119 (170)
Q Consensus        47 v~~g~~~~lAy~~~~-q~~~~~r~f-~~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~r-drGpy  119 (170)
                      +-+|+ .++|..... ..-.||-.+ +..+++.+++||+|||+.+||+++   |. .+|+||+|||+++|.... .+|.-
T Consensus        84 ~gIGH-~RyaT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~~~  162 (474)
T PRK06388         84 VGVGH-TRYSTAGSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYGLK  162 (474)
T ss_pred             EEEee-eeeeecCCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCCHH
Confidence            45555 666665432 122344322 245789999999999999999997   55 389999999999995432 33310


Q ss_pred             -CcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864          120 -PPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus       120 -p~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~  160 (170)
                       -..+++++|+|+|||+|++.  ++++++||+.|+||||+++
T Consensus       163 eai~~~~~~l~G~ya~vi~~~--~~l~a~RDp~GiRPL~~G~  202 (474)
T PRK06388        163 EGFERSMERLRGAYACALMIN--DRLYAIRDPNGIRPLVLGK  202 (474)
T ss_pred             HHHHHHHHhccCceeEEEEEC--CEEEEEECCCCCCceEEEe
Confidence             01358999999999999975  7899999999999999875

>PRK07631 amidophosphoribosyltransferase; Provisional

Probab=99.71  E-value=5.5e-17  Score=149.10  Aligned_cols=93  Identities=17%  Similarity=0.220  Sum_probs=74.0

Q ss_pred             ccccee-cccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCC--CcccccccCCceEEEEEE
Q 030864           65 LRQRSF-AVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPY--PPNHVVGHLSGYFAFIVY  137 (170)
Q Consensus        65 ~~~r~f-~~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpy--p~~~~l~~L~GmFAFviy  137 (170)
                      .||-.+ ...+++++++||+|||+.+||+++   |. .+++||+|||+++|.+++... +  -..+++++|+|+|||++|
T Consensus        95 ~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~~~~~~~-~~eai~~~~~~l~G~yalvi~  173 (475)
T PRK07631         95 VQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIKRSGAPT-LKEQIKNALSMLKGAYAFLLM  173 (475)
T ss_pred             cCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhCCCCceeeEE
Confidence            455321 345789999999999999999987   55 389999999999998643110 0  002588999999999999


Q ss_pred             eCCCCeEEEEeeCCCCcceeeEE
Q 030864          138 DKSTSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus       138 D~~~~~lf~ARDr~G~kPLY~~~  160 (170)
                      |.  +.+++|||+.|+||||+++
T Consensus       174 ~~--~~l~aaRDp~GirPL~~G~  194 (475)
T PRK07631        174 TE--TELYVALDPNGLRPLSIGR  194 (475)
T ss_pred             eC--CEEEEEECCCCCCCEEEEE
Confidence            96  6799999999999999975

>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type

Probab=99.70  E-value=1.6e-16  Score=134.06  Aligned_cols=108  Identities=15%  Similarity=0.130  Sum_probs=78.8

Q ss_pred             EEEeCCceeeeEecC-CCCCcccceecccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhh-hcCCC
Q 030864           46 SVQVGDNVTLAYTHQ-NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALR-DRAPY  119 (170)
Q Consensus        46 ~v~~g~~~~lAy~~~-~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~r-drGpy  119 (170)
                      .+-+|+ .++|.... ...-.||-.  . +++++++||+|||+.+||+++   |. ..+.||+|+|+++|+.+. ++| .
T Consensus        78 ~~~igH-~R~aT~g~~~~~n~qP~~--~-~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g-~  152 (249)
T cd01907          78 YHWIAH-TRQPTNSAVWWYGAHPFS--I-GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGG-L  152 (249)
T ss_pred             EEEEEE-EeccCCCCCCccCCCCee--c-CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCC-C
Confidence            355565 55554321 111334421  1 489999999999999999986   44 378999999999987533 334 2


Q ss_pred             Ccc----------------------cccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864          120 PPN----------------------HVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus       120 p~~----------------------~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~  160 (170)
                      +.+                      .++++|+|+|||+++|.  +.++++||++|.||||+++
T Consensus       153 ~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~  213 (249)
T cd01907         153 PLEYYKHIIRMPEEERELLLALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAE  213 (249)
T ss_pred             hHHHHHHHhcCCHhHHHHHHHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEE
Confidence            222                      58899999999999986  4589999999999999875

GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.

>PRK09123 amidophosphoribosyltransferase; Provisional

Probab=99.70  E-value=6.6e-17  Score=148.48  Aligned_cols=86  Identities=15%  Similarity=0.189  Sum_probs=71.2

Q ss_pred             ccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCCC--cccccccCCceEEEEEEeCCCCeEE
Q 030864           72 VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYP--PNHVVGHLSGYFAFIVYDKSTSTLF  145 (170)
Q Consensus        72 ~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpyp--~~~~l~~L~GmFAFviyD~~~~~lf  145 (170)
                      ..+++++++||+|||+.+||+++   |. .+++||+|+|+++|..+.. +.+.  ..+++++|+|+|||++||.  ++++
T Consensus       114 ~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~-~~~~eai~~~~~~L~G~ya~vil~~--~~l~  190 (479)
T PRK09123        114 EFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRK-ASFLDRFIDALRQVEGAYSLVALTN--TKLI  190 (479)
T ss_pred             CCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHhhcceeEEEEEC--CEEE
Confidence            35789999999999999999997   44 3889999999999986431 1000  0368999999999999996  6899


Q ss_pred             EEeeCCCCcceeeEE
Q 030864          146 VASVLAASHLLLSLK  160 (170)
Q Consensus       146 ~ARDr~G~kPLY~~~  160 (170)
                      ++||++|++|||++.
T Consensus       191 a~RD~~GirPL~~g~  205 (479)
T PRK09123        191 GARDPLGIRPLVLGE  205 (479)
T ss_pred             EEECCCCCCceEEEE
Confidence            999999999999875

>PRK08341 amidophosphoribosyltransferase; Provisional

Probab=99.69  E-value=1.2e-16  Score=145.50  Aligned_cols=110  Identities=16%  Similarity=0.202  Sum_probs=78.0

Q ss_pred             EEeCCceeeeEecCCCCCccccee-cccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHH-hhhcCCC-
Q 030864           47 VQVGDNVTLAYTHQNESPLRQRSF-AVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKA-LRDRAPY-  119 (170)
Q Consensus        47 v~~g~~~~lAy~~~~q~~~~~r~f-~~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~-~rdrGpy-  119 (170)
                      +-+|+ .++|.... ..-.+|-.. ...+++.+++||+|||+.+||+++   |. .+|+||+|||.+++.. +.++|.. 
T Consensus        68 ~~IGH-~R~sT~G~-~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~~~~  145 (442)
T PRK08341         68 LAIGH-VRYSTSGS-LSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETGDEF  145 (442)
T ss_pred             EEEEE-eeccccCC-CcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcCCHH
Confidence            44555 55655442 122333111 234789999999999999999987   54 3888999998776532 2234421 


Q ss_pred             -CcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864          120 -PPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus       120 -p~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~  160 (170)
                       -..+++++|+|+|||+|.+.  ++++++||+.|+||||++.
T Consensus       146 ~ai~~~~~~l~G~yal~i~~~--~~l~a~RD~~GirPL~~G~  185 (442)
T PRK08341        146 EAMREVFNEVKGAYSVAILFD--GKIIVARDPVGFRPLSYGE  185 (442)
T ss_pred             HHHHHHHHhccCceEEEEEEC--CEEEEEEcCCCceEEEEEE
Confidence             00146899999999999986  7899999999999999874

>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type

Probab=99.69  E-value=5.7e-16  Score=129.83  Aligned_cols=86  Identities=13%  Similarity=0.151  Sum_probs=70.6

Q ss_pred             cCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCC--cccccccCCceEEEEEEeCCCCeEEE
Q 030864           73 KDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP--PNHVVGHLSGYFAFIVYDKSTSTLFV  146 (170)
Q Consensus        73 ~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~~~rdrGpyp--~~~~l~~L~GmFAFviyD~~~~~lf~  146 (170)
                      .+++++++||+|||+.+||+++   |.. ++.||+|+|+++|..+.+.+...  ..+++++|+|+|||++||.  +++++
T Consensus        93 ~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~~al~~~~~~l~G~~a~~~~d~--~~l~~  170 (252)
T cd00715          93 LGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKGAYSLVIMTA--DGLIA  170 (252)
T ss_pred             CCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHHHHHHHHHHhccCceEEEEEEC--CEEEE
Confidence            4789999999999999999986   332 78899999999998654210000  0158999999999999998  99999


Q ss_pred             EeeCCCCcceeeEE
Q 030864          147 ASVLAASHLLLSLK  160 (170)
Q Consensus       147 ARDr~G~kPLY~~~  160 (170)
                      +||+.|.+|||+.+
T Consensus       171 ~RD~~G~~PL~~~~  184 (252)
T cd00715         171 VRDPHGIRPLVLGK  184 (252)
T ss_pred             EECCCCCCCeEEEE
Confidence            99999999999865

This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.

>PRK07349 amidophosphoribosyltransferase; Provisional

Probab=99.69  E-value=9.3e-17  Score=148.43  Aligned_cols=87  Identities=14%  Similarity=0.124  Sum_probs=71.8

Q ss_pred             cCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCC-CC--cccccccCCceEEEEEEeCCCCeEE
Q 030864           73 KDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAP-YP--PNHVVGHLSGYFAFIVYDKSTSTLF  145 (170)
Q Consensus        73 ~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGp-yp--~~~~l~~L~GmFAFviyD~~~~~lf  145 (170)
                      .+++++++||+|||+.+||+++   |. .+++||+|||+++|....+.|. +.  ..+++++|+|+|||+|.|.  ++++
T Consensus       127 ~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~~eai~~~~~~l~G~ya~vi~~~--~~l~  204 (500)
T PRK07349        127 LGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRCQGAFSLVIGTP--EGLM  204 (500)
T ss_pred             CCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhhhEEEEEEeC--CEEE
Confidence            4789999999999999999987   54 3899999999999976433331 11  1358899999999999875  6799


Q ss_pred             EEeeCCCCcceeeEEE
Q 030864          146 VASVLAASHLLLSLKV  161 (170)
Q Consensus       146 ~ARDr~G~kPLY~~~~  161 (170)
                      ++||+.|+||||+++.
T Consensus       205 aaRDp~GiRPL~~G~~  220 (500)
T PRK07349        205 GVRDPNGIRPLVIGTL  220 (500)
T ss_pred             EEECCCCCCCeEEEec
Confidence            9999999999999853

>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing)

Probab=99.69  E-value=2.8e-16  Score=145.54  Aligned_cols=86  Identities=17%  Similarity=0.206  Sum_probs=71.1

Q ss_pred             ccCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCCc---ccccccCCceEEEEEEeCCC-Ce
Q 030864           72 VKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGYFAFIVYDKST-ST  143 (170)
Q Consensus        72 ~~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~~~rdrGpyp~---~~~l~~L~GmFAFviyD~~~-~~  143 (170)
                      ..+++.+++||+|||+.+||+++   |+. +++||+|+|+++|..+++.|+-+.   .+++++|+|||||+|||+.+ ++
T Consensus        90 ~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~~a~~i~~~~~~~~  169 (607)
T TIGR01135        90 EGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLLEAVQKALKQLRGAYALAVLHADHPET  169 (607)
T ss_pred             CCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCceEEEEEecCCCCE
Confidence            44789999999999999999997   443 789999999999998665442110   16899999999999999887 46


Q ss_pred             EEEEeeCCCCcceeeEE
Q 030864          144 LFVASVLAASHLLLSLK  160 (170)
Q Consensus       144 lf~ARDr~G~kPLY~~~  160 (170)
                      ++++||.   ||||+++
T Consensus       170 l~~~Rd~---~PL~~~~  183 (607)
T TIGR01135       170 LVAARSG---SPLIVGL  183 (607)
T ss_pred             EEEEECC---CceEEEE
Confidence            9999994   9999875

The member from Methanococcus jannaschii contains an intein.

>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed

Probab=99.69  E-value=1.1e-16  Score=148.30  Aligned_cols=86  Identities=19%  Similarity=0.225  Sum_probs=72.5

Q ss_pred             ccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCCCc---ccccccCCceEEEEEEeCCC-Ce
Q 030864           72 VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGYFAFIVYDKST-ST  143 (170)
Q Consensus        72 ~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpyp~---~~~l~~L~GmFAFviyD~~~-~~  143 (170)
                      ..+++.+++||+|||+.+||+++   |+ .+++||+|+|+++|..+.++|.-+.   .+++++|+|+|||+|||+.+ ++
T Consensus        91 ~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~~~l~G~~a~~~~d~~~~~~  170 (604)
T PRK00331         91 CSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEGAYALAVIDKDEPDT  170 (604)
T ss_pred             CCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHhccCeeEEEEEecCCCCE
Confidence            34889999999999999999987   55 3789999999999998655552111   25899999999999999997 99


Q ss_pred             EEEEeeCCCCcceeeEE
Q 030864          144 LFVASVLAASHLLLSLK  160 (170)
Q Consensus       144 lf~ARDr~G~kPLY~~~  160 (170)
                      +++|||.   ||||++.
T Consensus       171 l~~~Rd~---~PL~~g~  184 (604)
T PRK00331        171 IVAARNG---SPLVIGL  184 (604)
T ss_pred             EEEEECC---CceEEEE
Confidence            9999995   9999874

>PRK07272 amidophosphoribosyltransferase; Provisional

Probab=99.67  E-value=2.5e-16  Score=145.11  Aligned_cols=86  Identities=17%  Similarity=0.223  Sum_probs=71.1

Q ss_pred             ccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCC--CcccccccCCceEEEEEEeCCCCeEE
Q 030864           72 VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPY--PPNHVVGHLSGYFAFIVYDKSTSTLF  145 (170)
Q Consensus        72 ~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpy--p~~~~l~~L~GmFAFviyD~~~~~lf  145 (170)
                      ..+++.+++||+|||+.+||+++   |. .+|+||+|||+++|..... +.+  -..+++++|+|+|||+++|.  ++++
T Consensus       104 ~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~-~~~~eai~~~~~~l~G~ya~~i~~~--~~l~  180 (484)
T PRK07272        104 HDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHN-PTFMGKLKEALNTVKGGFAYLLLTE--DKLI  180 (484)
T ss_pred             CCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHccCceeEEEEEC--CEEE
Confidence            35789999999999999999997   54 3889999999999986321 100  01258899999999999986  6899


Q ss_pred             EEeeCCCCcceeeEE
Q 030864          146 VASVLAASHLLLSLK  160 (170)
Q Consensus       146 ~ARDr~G~kPLY~~~  160 (170)
                      ++||+.|+||||+++
T Consensus       181 a~RDp~GirPL~~G~  195 (484)
T PRK07272        181 AALDPNGFRPLSIGK  195 (484)
T ss_pred             EEECCCCCCcEEEEE
Confidence            999999999999975

>PRK07847 amidophosphoribosyltransferase; Provisional

Probab=99.65  E-value=5.1e-16  Score=143.84  Aligned_cols=87  Identities=18%  Similarity=0.206  Sum_probs=72.1

Q ss_pred             cCcEEEEEceeecCHHHHHHHh---CC------CCCCchHHHHHHHHHHhhhcCCCC--cccccccCCceEEEEEEeCCC
Q 030864           73 KDEIFCLFEGALDNLGSLRQQY---GL------AKSANEVILVIEAYKALRDRAPYP--PNHVVGHLSGYFAFIVYDKST  141 (170)
Q Consensus        73 ~~~i~~vFNGEIyN~~eLr~~~---g~------~ks~sE~~vii~aY~~~rdrGpyp--~~~~l~~L~GmFAFviyD~~~  141 (170)
                      .+++.+++||+|||+.+||+++   |.      .+++||+|+|++++..+.+.|...  ..+++++|+|+|||++||.  
T Consensus       118 ~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~~~~~~~eai~~~~~~l~G~yA~vi~d~--  195 (510)
T PRK07847        118 GGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALELLPTVRGAFCLVFMDE--  195 (510)
T ss_pred             CCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhhhheEEEEEEC--
Confidence            5889999999999999999987   43      379999999999998754322110  0158999999999999996  


Q ss_pred             CeEEEEeeCCCCcceeeEEE
Q 030864          142 STLFVASVLAASHLLLSLKV  161 (170)
Q Consensus       142 ~~lf~ARDr~G~kPLY~~~~  161 (170)
                      ++++++||+.|++|||+++.
T Consensus       196 ~~L~aaRDp~GirPL~~g~~  215 (510)
T PRK07847        196 HTLYAARDPQGVRPLVLGRL  215 (510)
T ss_pred             CEEEEEECCCCCCCcEEEEE
Confidence            68999999999999998763

>PRK06781 amidophosphoribosyltransferase; Provisional

Probab=99.64  E-value=1.3e-15  Score=139.81  Aligned_cols=85  Identities=16%  Similarity=0.220  Sum_probs=70.4

Q ss_pred             cCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCC--CcccccccCCceEEEEEEeCCCCeEEE
Q 030864           73 KDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPY--PPNHVVGHLSGYFAFIVYDKSTSTLFV  146 (170)
Q Consensus        73 ~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpy--p~~~~l~~L~GmFAFviyD~~~~~lf~  146 (170)
                      .+++.+++||+|||+.+||+++   |. .+++||+|+|+++|..+.. +..  -..+++++|+|+|||+++|.  +++++
T Consensus       104 ~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~-~~~~eai~~~~~~l~G~ya~vi~~~--~~l~a  180 (471)
T PRK06781        104 DHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTK-DSLIESVKEALNKVKGAFAYLLLTG--NEMIV  180 (471)
T ss_pred             CCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHhCCCcEEEEEEEC--CEEEE
Confidence            5789999999999999999997   44 3889999999999986431 100  01246899999999999995  78999


Q ss_pred             EeeCCCCcceeeEE
Q 030864          147 ASVLAASHLLLSLK  160 (170)
Q Consensus       147 ARDr~G~kPLY~~~  160 (170)
                      |||+.|+||||++.
T Consensus       181 aRD~~GirPL~~g~  194 (471)
T PRK06781        181 ALDPNGFRPLSIGK  194 (471)
T ss_pred             EECCCCCCCeEEEE
Confidence            99999999999875

>PLN02440 amidophosphoribosyltransferase

Probab=99.63  E-value=1.6e-15  Score=139.19  Aligned_cols=82  Identities=15%  Similarity=0.195  Sum_probs=69.9

Q ss_pred             cCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhh-----hcCCCCcccccccCCceEEEEEEeCCCCe
Q 030864           73 KDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALR-----DRAPYPPNHVVGHLSGYFAFIVYDKSTST  143 (170)
Q Consensus        73 ~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~r-----drGpyp~~~~l~~L~GmFAFviyD~~~~~  143 (170)
                      .+++++++||+|+|+.+||+++   |. .+++||+|+|+++|..+.     +++    .+++++|+|+|||++||.  ++
T Consensus        94 ~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~a~----~~~~~~l~G~fa~vi~~~--~~  167 (479)
T PLN02440         94 FGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFSRI----VDACEKLKGAYSMVFLTE--DK  167 (479)
T ss_pred             CCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHHHH----HHHHHHhccceeeeEEEC--CE
Confidence            4689999999999999999987   43 378999999999997532     223    468999999999999996  56


Q ss_pred             EEEEeeCCCCcceeeEE
Q 030864          144 LFVASVLAASHLLLSLK  160 (170)
Q Consensus       144 lf~ARDr~G~kPLY~~~  160 (170)
                      ++++||+.|+||||++.
T Consensus       168 l~a~RD~~G~RPL~~g~  184 (479)
T PLN02440        168 LVAVRDPHGFRPLVMGR  184 (479)
T ss_pred             EEEEECCCCCCceEEEE
Confidence            99999999999999974

>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=99.62  E-value=1.9e-15  Score=141.69  Aligned_cols=109  Identities=16%  Similarity=0.214  Sum_probs=81.1

Q ss_pred             EEeCCceeeeEecCC-CCCcccceecccCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCC-
Q 030864           47 VQVGDNVTLAYTHQN-ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP-  120 (170)
Q Consensus        47 v~~g~~~~lAy~~~~-q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~~~rdrGpyp-  120 (170)
                      +-+|| .++|..... ..-.||-. ...+++.+++||+|||+.+||+++   |.. +++||+|+|+++|....++|.-+ 
T Consensus        97 ~~igH-~R~at~g~~~~~n~qP~~-~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~~  174 (640)
T PTZ00295         97 IGIAH-TRWATHGGKTDENAHPHC-DYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQ  174 (640)
T ss_pred             EEEEE-eccccCCCCCcCCCCCCC-CCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCHH
Confidence            45555 666664421 11234422 234799999999999999999986   553 88999999999987554555211 


Q ss_pred             --cccccccCCceEEEEEEeCC-CCeEEEEeeCCCCcceeeEE
Q 030864          121 --PNHVVGHLSGYFAFIVYDKS-TSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus       121 --~~~~l~~L~GmFAFviyD~~-~~~lf~ARDr~G~kPLY~~~  160 (170)
                        ..+++++|+|+|||++||+. .++++++||+   ||||++.
T Consensus       175 ~a~~~~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~  214 (640)
T PTZ00295        175 EAVKSAISRLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGI  214 (640)
T ss_pred             HHHHHHHHHhhhhceEEEEEeCCCCEEEEEECC---CceEEEE
Confidence              12589999999999999987 5899999997   9999875

>PRK09246 amidophosphoribosyltransferase; Provisional

Probab=99.61  E-value=2.8e-15  Score=138.11  Aligned_cols=96  Identities=14%  Similarity=0.106  Sum_probs=72.6

Q ss_pred             cccceecccCcEEEEEceeecCHHHHHHHh----CC-CCCCchHHHHHHHHHHhhhc--CC--CCcc------cccccCC
Q 030864           65 LRQRSFAVKDEIFCLFEGALDNLGSLRQQY----GL-AKSANEVILVIEAYKALRDR--AP--YPPN------HVVGHLS  129 (170)
Q Consensus        65 ~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~----g~-~ks~sE~~vii~aY~~~rdr--Gp--yp~~------~~l~~L~  129 (170)
                      .||-.....+++.+++||+|||+.+||+++    +. .+++||+|+|+++|.++...  |.  -+.+      +++++|+
T Consensus        85 ~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai~~~~~~l~  164 (501)
T PRK09246         85 AQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAVAAVHRRVR  164 (501)
T ss_pred             CCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcc
Confidence            455332333459999999999999999986    22 38999999999999865322  20  0111      5889999


Q ss_pred             ceEEEEEEeCCCCeEEEEeeCCCCcceeeEEE
Q 030864          130 GYFAFIVYDKSTSTLFVASVLAASHLLLSLKV  161 (170)
Q Consensus       130 GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~~  161 (170)
                      |+|||++|. ..++++++||++|+||||+++.
T Consensus       165 Gays~v~~~-~~~~l~a~RDp~GirPL~~g~~  195 (501)
T PRK09246        165 GAYAVVAMI-IGHGLVAFRDPHGIRPLVLGKR  195 (501)
T ss_pred             cceeeEEEe-cCCcEEEEECCCCCCCeEEEee
Confidence            999999884 3456999999999999999854

>PRK05793 amidophosphoribosyltransferase; Provisional

Probab=99.60  E-value=4.2e-15  Score=136.10  Aligned_cols=88  Identities=13%  Similarity=0.130  Sum_probs=71.6

Q ss_pred             ccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCC-CcccccccCCceEEEEEEeCCCCeEEE
Q 030864           72 VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPY-PPNHVVGHLSGYFAFIVYDKSTSTLFV  146 (170)
Q Consensus        72 ~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpy-p~~~~l~~L~GmFAFviyD~~~~~lf~  146 (170)
                      ..+++.+++||+|||+.+||+++   |. .+++||+|+|++++.++...++- -..+++++|+|+|||+++|.  +++++
T Consensus       108 ~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~~ai~~~~~~l~G~ya~vi~~~--~~l~a  185 (469)
T PRK05793        108 KLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEKALVDAIQAIKGSYALVILTE--DKLIG  185 (469)
T ss_pred             CCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhhceEEEEEC--CEEEE
Confidence            35789999999999999999986   44 37899999999999864321110 00158899999999999986  78999


Q ss_pred             EeeCCCCcceeeEEE
Q 030864          147 ASVLAASHLLLSLKV  161 (170)
Q Consensus       147 ARDr~G~kPLY~~~~  161 (170)
                      +||+.|+||||+++.
T Consensus       186 ~RD~~GirPL~~g~~  200 (469)
T PRK05793        186 VRDPHGIRPLCLGKL  200 (469)
T ss_pred             EECCCCCCCcEEEEE
Confidence            999999999998753

>TIGR01134 purF amidophosphoribosyltransferase

Probab=99.55  E-value=2.2e-14  Score=130.29  Aligned_cols=94  Identities=15%  Similarity=0.121  Sum_probs=72.0

Q ss_pred             cccceecccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCCC---cccccccCCceEEEEEE
Q 030864           65 LRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYP---PNHVVGHLSGYFAFIVY  137 (170)
Q Consensus        65 ~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpyp---~~~~l~~L~GmFAFviy  137 (170)
                      .||-.....+.+++++||+|+|+.+||+++   |. .++.||+|+|+++|..++..+.-.   ..+++++|+|+|||++|
T Consensus        85 ~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~~~ai~~~~~~l~G~falvi~  164 (442)
T TIGR01134        85 AQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLFEAIARVLKRVRGAYALVIM  164 (442)
T ss_pred             CCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCHHHHHHHHHHHhCccceEEEE
Confidence            455322223459999999999999999986   43 378999999999998743111000   02588999999999999


Q ss_pred             eCCCCeEEEEeeCCCCcceeeEE
Q 030864          138 DKSTSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus       138 D~~~~~lf~ARDr~G~kPLY~~~  160 (170)
                      |.  ++++++||+.|.+|||++.
T Consensus       165 ~~--~~L~a~RD~~G~rPL~~g~  185 (442)
T TIGR01134       165 IG--DGLIAVRDPHGIRPLVLGK  185 (442)
T ss_pred             EC--CEEEEEECCCCCCCcEEEE
Confidence            74  6899999999999999864

Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.

>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=99.55  E-value=2e-14  Score=136.31  Aligned_cols=110  Identities=14%  Similarity=0.086  Sum_probs=80.7

Q ss_pred             EEeCCceeeeEecCC-CCCcccceecccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHH-hhhcCCCC
Q 030864           47 VQVGDNVTLAYTHQN-ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKA-LRDRAPYP  120 (170)
Q Consensus        47 v~~g~~~~lAy~~~~-q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~-~rdrGpyp  120 (170)
                      +-+|+ .++|..... ..-.||-. ...+++++|+||+||||.+||+++   |. .+|+||+|||+++.+. +.+||...
T Consensus        99 ~~igH-~R~at~g~~~~~n~qP~~-~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi~~li~~~~~~~g~~~  176 (670)
T PTZ00394         99 VGIAH-TRWATHGGVCERNCHPQQ-SNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVISVLSEYLYTRKGIHN  176 (670)
T ss_pred             EEEEE-eeceecCCCCcCCCCCcC-CCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHHHHHHHHHHHhcCCCC
Confidence            55666 777775532 22335532 346899999999999999999996   55 3889999999976432 22355211


Q ss_pred             c----ccccccCCceEEEEEEeCC-CCeEEEEeeCCCCcceeeEEE
Q 030864          121 P----NHVVGHLSGYFAFIVYDKS-TSTLFVASVLAASHLLLSLKV  161 (170)
Q Consensus       121 ~----~~~l~~L~GmFAFviyD~~-~~~lf~ARDr~G~kPLY~~~~  161 (170)
                      .    .+++++|+|||||+|.+.. .+++++|||+   +||+.+.-
T Consensus       177 ~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~  219 (670)
T PTZ00394        177 FADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIR  219 (670)
T ss_pred             HHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEec
Confidence            1    1689999999999999644 5999999999   99998875

>PLN02981 glucosamine:fructose-6-phosphate aminotransferase

Probab=99.46  E-value=2.2e-13  Score=129.25  Aligned_cols=111  Identities=15%  Similarity=0.142  Sum_probs=77.5

Q ss_pred             EEeCCceeeeEecCC-CCCcccceecccCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHHH-hhhcCCC-
Q 030864           47 VQVGDNVTLAYTHQN-ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKA-LRDRAPY-  119 (170)
Q Consensus        47 v~~g~~~~lAy~~~~-q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~~-~rdrGpy-  119 (170)
                      +-+|| .++|..... ..-.||-.-+..+.+++++||+|||+.+||+++   |.. +|+||+|||+++.+. ++.+|+. 
T Consensus        88 ~~IGH-~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~~~~~~~  166 (680)
T PLN02981         88 AGIAH-TRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFDKLNEEE  166 (680)
T ss_pred             EEEEE-cccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHHhccccc
Confidence            44455 555554321 122344322235789999999999999999986   553 899999999998432 2245531 


Q ss_pred             C---c----ccccccCCceEEEEEEeCCC-CeEEEEeeCCCCcceeeEEE
Q 030864          120 P---P----NHVVGHLSGYFAFIVYDKST-STLFVASVLAASHLLLSLKV  161 (170)
Q Consensus       120 p---~----~~~l~~L~GmFAFviyD~~~-~~lf~ARDr~G~kPLY~~~~  161 (170)
                      +   .    .+++++|+|+|||+|.++.. +++++|||.   +||..+..
T Consensus       167 ~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~  213 (680)
T PLN02981        167 GDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVK  213 (680)
T ss_pred             CCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecC---CceEEEec
Confidence            0   0    14899999999999999775 999999995   78776643

>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]

Probab=98.89  E-value=4.4e-09  Score=99.69  Aligned_cols=123  Identities=16%  Similarity=0.237  Sum_probs=84.4

Q ss_pred             ChHHHHHHhhccCCCceEEEeCCceeeeEecCCCC--CcccceecccCcEEEEEceeecCHHHHHHHh---CC-CCCCch
Q 030864           29 TSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNES--PLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL-AKSANE  102 (170)
Q Consensus        29 ~~~~l~~~f~~~~p~a~~v~~g~~~~lAy~~~~q~--~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE  102 (170)
                      +..+| +.-....|-.-.+-+|| .++|= |+..+  --||- +.  +++.+|.||-|.||.+||++|   |+ .+|+||
T Consensus        51 kv~~l-~~~~~~~~~~~~~gIgH-TRWAT-HG~P~~~NAHPh-~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TD  124 (597)
T COG0449          51 KISNL-EELLNKEPLIGGVGIAH-TRWAT-HGGPTRANAHPH-SD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTD  124 (597)
T ss_pred             CHHHH-HhhhcccccCCceeeee-ccccC-CCCCCcCCCCCC-CC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCc
Confidence            34444 33333444333444555 56654 43322  34553 22  899999999999999999997   66 389999


Q ss_pred             HHHHHHHHHHhhhcCCCC-cccccccCCceEEEEEEeCCC-CeEEEEeeCCCCcceeeEE
Q 030864          103 VILVIEAYKALRDRAPYP-PNHVVGHLSGYFAFIVYDKST-STLFVASVLAASHLLLSLK  160 (170)
Q Consensus       103 ~~vii~aY~~~rdrGpyp-~~~~l~~L~GmFAFviyD~~~-~~lf~ARDr~G~kPLY~~~  160 (170)
                      ||||-|+....-+.|..- ...++++|+|.||+++.|... +++++||-.   .||.-+.
T Consensus       125 TEVi~hLi~~~~~~~~~~a~~~~l~~l~Gsyal~~~~~~~p~~i~~ar~~---sPL~iG~  181 (597)
T COG0449         125 TEVIAHLLEEIYDTSLLEAVKKVLKRLEGSYALLCTHSDFPDELVAARKG---SPLVIGV  181 (597)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHhcceeEEEEEecCCCCeEEEEcCC---CCeEEEe
Confidence            999999986543333110 125899999999999999997 899999863   5888654

>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]

Probab=98.80  E-value=1.3e-08  Score=94.09  Aligned_cols=78  Identities=22%  Similarity=0.327  Sum_probs=63.3

Q ss_pred             ccCcEEEEEceeecCHHHHHHHhCCCCCCchHHHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCC
Q 030864           72 VKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLA  151 (170)
Q Consensus        72 ~~~~i~~vFNGEIyN~~eLr~~~g~~ks~sE~~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~  151 (170)
                      ++++++..|||||||-..       +.+..|+..|.+....+++-|  ...+.++.++|.|||++||.++++||..||++
T Consensus        67 ~d~~~vfl~NGeIyn~~~-------s~~~~d~~~l~~~l~~~~e~~--~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~  137 (520)
T KOG0573|consen   67 EDDRYVFLFNGEIYNGEK-------SDTLFDTDILAEELSNLKESG--DILDIIKSLQGPWAFIYYDVRSDKLYFGRDDI  137 (520)
T ss_pred             cccceEEEecceeccCCC-------ccccchHHHHHHHHhcCCccc--cHHHHHHhccCCceEEEEEccCcEEEEecccc
Confidence            556699999999999542       455668888888888776544  23467888999999999999999999999999


Q ss_pred             CCcceee
Q 030864          152 ASHLLLS  158 (170)
Q Consensus       152 G~kPLY~  158 (170)
                      |++-|-|
T Consensus       138 GRrSLly  144 (520)
T KOG0573|consen  138 GRRSLLY  144 (520)
T ss_pred             cceeeeE
Confidence            9998763

>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]

Probab=98.73  E-value=3.2e-08  Score=91.39  Aligned_cols=87  Identities=17%  Similarity=0.211  Sum_probs=69.1

Q ss_pred             cCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhh-cCCC-CcccccccCCceEEEEEEeCCCCeEEE
Q 030864           73 KDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRD-RAPY-PPNHVVGHLSGYFAFIVYDKSTSTLFV  146 (170)
Q Consensus        73 ~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rd-rGpy-p~~~~l~~L~GmFAFviyD~~~~~lf~  146 (170)
                      .+.+.+.+||.|-|..+||+++   |. ..+++|+|+|++++..-.+ .+.. ...++++++.|-||+++..+.  .|++
T Consensus       100 ~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~~~~~a~~~~~~~v~G~ys~v~~~~~--~lia  177 (470)
T COG0034         100 GGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDEDDIFEAVKEVLRRVKGAYALVALIKD--GLIA  177 (470)
T ss_pred             CCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccccHHHHHHHHHhhcCCcEEEEEEECC--eEEE
Confidence            4679999999999999999997   44 3788999999999975221 1110 012577899999999999764  9999


Q ss_pred             EeeCCCCcceeeEEE
Q 030864          147 ASVLAASHLLLSLKV  161 (170)
Q Consensus       147 ARDr~G~kPLY~~~~  161 (170)
                      +||+.|++||-.++.
T Consensus       178 ~RDP~GiRPL~iG~~  192 (470)
T COG0034         178 VRDPNGIRPLVLGKL  192 (470)
T ss_pred             EECCCCCccceeeec
Confidence            999999999986654

>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type

Probab=98.55  E-value=7e-07  Score=81.72  Aligned_cols=82  Identities=9%  Similarity=0.039  Sum_probs=63.5

Q ss_pred             EEEEEceeecCHHHHHHHh------------C---------CCCCCchHHHHHHHHHHhhhcCCCCcc------------
Q 030864           76 IFCLFEGALDNLGSLRQQY------------G---------LAKSANEVILVIEAYKALRDRAPYPPN------------  122 (170)
Q Consensus        76 i~~vFNGEIyN~~eLr~~~------------g---------~~ks~sE~~vii~aY~~~rdrGpyp~~------------  122 (170)
                      -+++.||||+|+..+|...            |         ...+.||++++.++.+.|-..|. +..            
T Consensus       225 r~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~ld~~le~l~~~g~-~l~~A~~mliPeaw~  303 (413)
T cd00713         225 RYLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSASLDNVLELLVRSGR-SLPEAMMMLIPEAWQ  303 (413)
T ss_pred             eeEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHHHHHHHHHHHHcCC-CHHHHHHHhCChhhc
Confidence            3589999999999998653            1         12468888888888876654453 222            


Q ss_pred             -----------------cccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864          123 -----------------HVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus       123 -----------------~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~  160 (170)
                                       .+...++|.||+++-|.  +.+.++|||+|.+||+|+.
T Consensus       304 ~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg--~~i~a~rDrnGlRPl~~~~  356 (413)
T cd00713         304 NNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDG--RQVGASLDRNGLRPARYVI  356 (413)
T ss_pred             cCccCCHHHHHHHHHHHHHhccCCCcEEEEEEeC--CEEEEEeCCCCCcceEEEE
Confidence                             23477999999999985  7899999999999999873

GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.

>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type

Probab=98.40  E-value=8.9e-07  Score=74.58  Aligned_cols=86  Identities=16%  Similarity=0.200  Sum_probs=65.5

Q ss_pred             CcEEEEEceeecCHHHHHHHhC----C-CCCCchHHHHHHHHHHhh-hcCCC-------CcccccccCC-----ceEEEE
Q 030864           74 DEIFCLFEGALDNLGSLRQQYG----L-AKSANEVILVIEAYKALR-DRAPY-------PPNHVVGHLS-----GYFAFI  135 (170)
Q Consensus        74 ~~i~~vFNGEIyN~~eLr~~~g----~-~ks~sE~~vii~aY~~~r-drGpy-------p~~~~l~~L~-----GmFAFv  135 (170)
                      ++++++.||.|+|+.+||..+.    . .+++||+|++.+...... +.++-       -..+.++.|+     |.|+|+
T Consensus       106 ~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~n~~  185 (257)
T cd01908         106 GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPLDPAELLDAILQTLRELAALAPPGRLNLL  185 (257)
T ss_pred             CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhCcCeEEEEE
Confidence            4899999999999999998863    2 378888888888776532 22221       0124677888     789999


Q ss_pred             EEeCCCCeEEEEeeCCCCcceeeEEEc
Q 030864          136 VYDKSTSTLFVASVLAASHLLLSLKVV  162 (170)
Q Consensus       136 iyD~~~~~lf~ARDr~G~kPLY~~~~~  162 (170)
                      +-|.  .+++++||+. ..||||....
T Consensus       186 ~~dg--~~l~a~r~~~-~~~L~~~~~~  209 (257)
T cd01908         186 LSDG--EYLIATRYAS-APSLYYLTRR  209 (257)
T ss_pred             EECC--CEEEEEEeCC-CCceEEEecc
Confidence            8886  7799999999 8999988754

YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.

>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]

Probab=98.37  E-value=1.1e-06  Score=80.45  Aligned_cols=96  Identities=17%  Similarity=0.261  Sum_probs=70.1

Q ss_pred             CCCcccceecccCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHHH-----hhhcCC-CCc--ccccccCC
Q 030864           62 ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKA-----LRDRAP-YPP--NHVVGHLS  129 (170)
Q Consensus        62 q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~~-----~rdrGp-yp~--~~~l~~L~  129 (170)
                      ||....   +..+.+.+..||++-|+++||+++   |.. .|+||+|+|++.+..     +|..+| |++  .++.+.++
T Consensus        89 QPFvv~---t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~~d~~~ri~~~~~~~~  165 (474)
T KOG0572|consen   89 QPFVVN---TPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIRDVMELLP  165 (474)
T ss_pred             cceEee---ccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhcccCccHHHHHHHHHHhcC
Confidence            554443   356789999999999999999986   332 677888888887652     111222 111  15778899


Q ss_pred             ceEEEEEEeCCCCeEEEEeeCCCCcceeeEEEc
Q 030864          130 GYFAFIVYDKSTSTLFVASVLAASHLLLSLKVV  162 (170)
Q Consensus       130 GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~~~  162 (170)
                      |.|+.++.-.  +.+++.||++|.+||-.+..+
T Consensus       166 g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~  196 (474)
T KOG0572|consen  166 GAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRS  196 (474)
T ss_pred             CceeEEEEEc--cEEEEEecCCCCccceEeeec
Confidence            9999998844  559999999999999976654

>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group

Probab=98.10  E-value=1.9e-05  Score=70.95  Aligned_cols=85  Identities=13%  Similarity=0.015  Sum_probs=58.3

Q ss_pred             CcEEEEEceeecCHHHHHHHh---CC-CCC----------------CchHHHHHHHHHHhhhcCCCCcc-----------
Q 030864           74 DEIFCLFEGALDNLGSLRQQY---GL-AKS----------------ANEVILVIEAYKALRDRAPYPPN-----------  122 (170)
Q Consensus        74 ~~i~~vFNGEIyN~~eLr~~~---g~-~ks----------------~sE~~vii~aY~~~rdrGpyp~~-----------  122 (170)
                      .-.+++-||||.|+..++..+   +. .++                .||++++.++.+.+-..| ++..           
T Consensus       217 Pf~~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS~~l~~~le~l~~~g-~~l~~a~~~l~p~~~  295 (361)
T PF00310_consen  217 PFRALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDSEVLDNLLELLLRRG-RSLEEAMMMLIPPAW  295 (361)
T ss_dssp             SEEEEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HHHHHHHHHHHHHHTT-SSHHHHHHHHSGG--
T ss_pred             hHHHhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHhhCCccc
Confidence            344999999999999999874   32 133                889998988888777777 1111           


Q ss_pred             ------------------cccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEEE
Q 030864          123 ------------------HVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLKV  161 (170)
Q Consensus       123 ------------------~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~~  161 (170)
                                        .+...++|-||+++-|..  .++++|||.|.+|+.++..
T Consensus       296 ~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g~--~~~a~~Dr~GLRP~~~~~~  350 (361)
T PF00310_consen  296 ENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDGN--GVGAFLDRNGLRPLRYGIT  350 (361)
T ss_dssp             TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECSS--EEEEEE-TT--S--EEEEE
T ss_pred             ccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeCC--EEEEEECCCCCcceEEEEE
Confidence                              346779999999999764  5999999999999987644

This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....

>TIGR03442 conserved hypothetical protein TIGR03442

Probab=97.81  E-value=5.8e-05  Score=64.32  Aligned_cols=82  Identities=17%  Similarity=0.171  Sum_probs=60.4

Q ss_pred             CcEEEEEceeecCHH-----HHHHHh---CC--CCCCchHHHHHHHHHHhh-hcCCCCcc----cccccCCce-------
Q 030864           74 DEIFCLFEGALDNLG-----SLRQQY---GL--AKSANEVILVIEAYKALR-DRAPYPPN----HVVGHLSGY-------  131 (170)
Q Consensus        74 ~~i~~vFNGEIyN~~-----eLr~~~---g~--~ks~sE~~vii~aY~~~r-drGpyp~~----~~l~~L~Gm-------  131 (170)
                      ++++++.||.|.|+.     +|++++   ++  .+++||+|++.+++.... +..|....    ++++.|.|.       
T Consensus       109 g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li~~~~~~~~~~~~~~ai~~~~~~l~~~~~~~~~~  188 (251)
T TIGR03442       109 GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALLLNRLLENDPRALEEALAEVLLILFSAAAAPRVR  188 (251)
T ss_pred             CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHhhCcccc
Confidence            689999999999998     566554   22  378888888888776543 32222212    456666777       


Q ss_pred             EEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864          132 FAFIVYDKSTSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus       132 FAFviyD~~~~~lf~ARDr~G~kPLY~~~  160 (170)
                      |.|++-|.  .++++.||+.   |||+++
T Consensus       189 ~n~~~sdg--~~l~a~R~~~---~L~~~~  212 (251)
T TIGR03442       189 LNLLLTDG--SRLVATRWAD---TLYWLK  212 (251)
T ss_pred             eEEEEEcC--CEEEEEEeCC---eEEEEE
Confidence            99999984  8899999998   999875

Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).

>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]

Probab=97.34  E-value=0.00017  Score=68.55  Aligned_cols=78  Identities=19%  Similarity=0.347  Sum_probs=59.8

Q ss_pred             cccCcEEEEEceeecCHHHHHHHh---CCC-CCCchHHHHHHHHHHhhhcCCCC--------cccccccCCceEEEEEEe
Q 030864           71 AVKDEIFCLFEGALDNLGSLRQQY---GLA-KSANEVILVIEAYKALRDRAPYP--------PNHVVGHLSGYFAFIVYD  138 (170)
Q Consensus        71 ~~~~~i~~vFNGEIyN~~eLr~~~---g~~-ks~sE~~vii~aY~~~rdrGpyp--------~~~~l~~L~GmFAFviyD  138 (170)
                      ...+...+|.||-|-||++||.-+   |+. .++||+|+|-.+|..+-|.-  |        .+.++++|+|-||++.=-
T Consensus       105 d~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~--~~~~~F~~lv~~v~k~lEGaFalvfkS  182 (670)
T KOG1268|consen  105 DPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTS--PEDLDFHVLVELVLKELEGAFGLLFKS  182 (670)
T ss_pred             CCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHHHHHHHhhC--CCcccHHHHHHHHHHHhhhHHHHHHHh
Confidence            456788999999999999999875   663 67888888888887654433  4        467899999999998753


Q ss_pred             CC-CCeEEEEeeC
Q 030864          139 KS-TSTLFVASVL  150 (170)
Q Consensus       139 ~~-~~~lf~ARDr  150 (170)
                      +. -+++.+.|+.
T Consensus       183 ~hfP~e~Va~Rrg  195 (670)
T KOG1268|consen  183 SHFPGEVVAARKG  195 (670)
T ss_pred             hcCCcceeeeccC
Confidence            22 3788888764

>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices

Probab=95.82  E-value=0.062  Score=45.28  Aligned_cols=78  Identities=19%  Similarity=0.232  Sum_probs=54.8

Q ss_pred             CcEEEEEceeecCHHHHHHHhCC----CCCCchHHHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEee
Q 030864           74 DEIFCLFEGALDNLGSLRQQYGL----AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASV  149 (170)
Q Consensus        74 ~~i~~vFNGEIyN~~eLr~~~g~----~ks~sE~~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARD  149 (170)
                      ++...--=|.|||-.-|+.-.|.    .-.-||+|+++-.|-.|+       ...+.--+|.|.|.|=| +++++-+-.|
T Consensus        47 ~~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~lG-------~~aLsLAEGdfcffiE~-kng~L~l~Td  118 (201)
T PF09147_consen   47 ERGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTRLG-------NSALSLAEGDFCFFIED-KNGELTLITD  118 (201)
T ss_dssp             TTEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHHH--------GGGGGG--SSEEEEEEE-TTSEEEEEE-
T ss_pred             cCccEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHHHhh-------hhhhhhhcCceEEEEec-CCCcEEEEec
Confidence            34444445999999999988764    257899999999998766       57999999999999876 5789999999


Q ss_pred             CCCCcceeeE
Q 030864          150 LAASHLLLSL  159 (170)
Q Consensus       150 r~G~kPLY~~  159 (170)
                      +-|--|.|-+
T Consensus       119 s~G~~pv~lV  128 (201)
T PF09147_consen  119 SRGFNPVYLV  128 (201)
T ss_dssp             SSSSS-EEEE
T ss_pred             CCCCceEEEE
Confidence            9999999954

Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=94.05  E-value=0.42  Score=50.43  Aligned_cols=32  Identities=6%  Similarity=-0.138  Sum_probs=28.4

Q ss_pred             ccccCCceEEEEEEeCCCCeEEEEeeCCCCccee
Q 030864          124 VVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLL  157 (170)
Q Consensus       124 ~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY  157 (170)
                      +..-++|-||+++-|.  +.+.+.|||+|.+||-
T Consensus       332 lmEpwdGpaaiv~~~g--~~i~A~~DrnGlRPlr  363 (1485)
T PRK11750        332 HMEPWDGPAGIVMTDG--RYAACNLDRNGLRPAR  363 (1485)
T ss_pred             hcccCCCCEEEEEEeC--CEEEEecCCCCCccce
Confidence            5556799999999985  8999999999999993

>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D

Probab=91.19  E-value=0.48  Score=40.88  Aligned_cols=73  Identities=16%  Similarity=0.323  Sum_probs=42.9

Q ss_pred             CcEEEEEceeecCHHHHHHH-hCCCCCCchHHHHHHHH-HHhhhcCCC---Ccc-------cccccCC--ceEEEEEEeC
Q 030864           74 DEIFCLFEGALDNLGSLRQQ-YGLAKSANEVILVIEAY-KALRDRAPY---PPN-------HVVGHLS--GYFAFIVYDK  139 (170)
Q Consensus        74 ~~i~~vFNGEIyN~~eLr~~-~g~~ks~sE~~vii~aY-~~~rdrGpy---p~~-------~~l~~L~--GmFAFviyD~  139 (170)
                      ++++.+.||.|+++..++.. |- ..++||.|.+...+ ..+++.++.   ..+       +.+++++  |.+.|++.|-
T Consensus       101 ~~w~FaHNG~i~~f~~~~~~~~~-~~G~TDSE~~F~lll~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~N~~lsDG  179 (271)
T PF13230_consen  101 RRWLFAHNGTIPGFEDILDDRYQ-PVGTTDSEHAFCLLLDQLRDRGPDAPPALEELFEALRELAKEINEYGSLNFLLSDG  179 (271)
T ss_dssp             TTEEEEEEEEETTGGGGHHHHHT---S--HHHHHHHHHHHTTTTT-HH--HHHHHHHHHHHHHHHS-SSSEEEEEEEE-S
T ss_pred             CcEEEEeCCccccccccCccccc-cCCCcHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhccCeeEEEEEECC
Confidence            68999999999999887732 43 35566666555554 344444420   011       2233443  7899999997


Q ss_pred             CCCeEEEEee
Q 030864          140 STSTLFVASV  149 (170)
Q Consensus       140 ~~~~lf~ARD  149 (170)
                        .++|+-|+
T Consensus       180 --~~l~a~~~  187 (271)
T PF13230_consen  180 --ERLFAHRY  187 (271)
T ss_dssp             --S-EEEEEE
T ss_pred             --ceEEEEEc
Confidence              68999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
1ct9_A	553	Asparagine synthetase B; amidotransferase, substra	99.89
1jgt_A	513	Beta-lactam synthetase; asparagine synthetase, cla	99.87
1xff_A	240	D-fructose-6-, glucosamine--fructose-6-phosphate a	99.81
1q15_A	503	CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS,	99.81
1ao0_A	459	Glutamine phosphoribosylpyrophosphate amidotransfe	99.77
2bpl_A	608	Glucosamine--fructose-6-phosphate aminotransferase	99.72
1ecf_A	504	Glutamine phosphoribosylpyrophosphate amidotransf;	99.72
3mdn_A	274	Glutamine aminotransferase class-II domain protei;	99.52
1te5_A	257	Conserved hypothetical protein; glutamine amidotra	98.46
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	98.13
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	97.98

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1

Probab=99.89  E-value=6.5e-23  Score=187.53  Aligned_cols=110  Identities=18%  Similarity=0.305  Sum_probs=89.7

Q ss_pred             CCceEEEeCCceeeeEe-----cCCCCCcccceecccCcEEEEEceeecCHHHHHHHhC--C-CCCCchHHHHHHHHHHh
Q 030864           42 SSAVSVQVGDNVTLAYT-----HQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG--L-AKSANEVILVIEAYKAL  113 (170)
Q Consensus        42 p~a~~v~~g~~~~lAy~-----~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g--~-~ks~sE~~vii~aY~~~  113 (170)
                      ||+..+-..+...|+.+     ... .-.|| +....++++++|||||||+.+||+++.  + .++.||+|||+++|++ 
T Consensus        32 pD~~G~~~~~~~~lgh~Rlsi~~~~-~~~QP-~~~~~~~~~lv~NGeIyN~~eLr~~L~~~~~f~s~sDtEvil~l~~~-  108 (553)
T 1ct9_A           32 PDWSGIYASDNAILAHERLSIVDVN-AGAQP-LYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQE-  108 (553)
T ss_dssp             BTEEEEEECSSEEEEEEECCCSCTT-TCCSS-EECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSCCTTHHHHHHHHH-
T ss_pred             CCcccEEEECCEEEEEEeeeeeCCC-CCCCC-eEeCCCCEEEEEEEEEECHHHHHHHHhccCccCCCCcHHHHHHHHHH-
Confidence            99888877654444443     322 33455 344567899999999999999999974  2 3788999999999996 


Q ss_pred             hhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864          114 RDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus       114 rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~  160 (170)
                        ||    .+++++|+|||||+|||.+++++++|||++|+|||||.+
T Consensus       109 --~g----~~~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~  149 (553)
T 1ct9_A          109 --KG----PEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGY  149 (553)
T ss_dssp             --HT----TTTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEE
T ss_pred             --HH----HHHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEE
Confidence              56    479999999999999999999999999999999999876

>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*

Probab=99.87  E-value=2.1e-22  Score=182.74  Aligned_cols=78  Identities=18%  Similarity=0.183  Sum_probs=71.2

Q ss_pred             CcEEEEEceeecCHHHHHHHhCC-CCCCchHHHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCC
Q 030864           74 DEIFCLFEGALDNLGSLRQQYGL-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAA  152 (170)
Q Consensus        74 ~~i~~vFNGEIyN~~eLr~~~g~-~ks~sE~~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G  152 (170)
                      ++++++|||||||+.+||+++++ .+|.||+|||+++|++   ||    .+++++|+|||||+|||..+  +++|||++|
T Consensus        69 ~~~~lv~NGeIyN~~eLr~~L~~~f~t~sDtEvil~l~~~---~g----~~~~~~l~G~fA~~i~d~~~--l~~aRD~~G  139 (513)
T 1jgt_A           69 APTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRLLER---YD----LHAFRLVNGRFATVVRTGDR--VLLATDHAG  139 (513)
T ss_dssp             SSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHHHHHHHH---HG----GGGGGTCCEEEEEEEEETTE--EEEEECTTC
T ss_pred             CCEEEEEEEEEeCHHHHHHHhCCCCCCCCHHHHHHHHHHH---Hh----HHhHhhcCeeEEEEEEECCE--EEEEECCCC
Confidence            78999999999999999999864 3899999999999996   45    47999999999999999876  999999999


Q ss_pred             CcceeeEE
Q 030864          153 SHLLLSLK  160 (170)
Q Consensus       153 ~kPLY~~~  160 (170)
                      +|||||..
T Consensus       140 ~kPLyy~~  147 (513)
T 1jgt_A          140 SVPLYTCV  147 (513)
T ss_dssp             CSCCEEEE
T ss_pred             CceeEEEE
Confidence            99999864

>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*

Probab=99.81  E-value=5.6e-19  Score=145.16  Aligned_cols=84  Identities=17%  Similarity=0.215  Sum_probs=71.3

Q ss_pred             CcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCCCc---ccccccCCceEEEEEEeCC-CCeEE
Q 030864           74 DEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGYFAFIVYDKS-TSTLF  145 (170)
Q Consensus        74 ~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpyp~---~~~l~~L~GmFAFviyD~~-~~~lf  145 (170)
                      +++++++||+|||+.+||+++   |+ .++.||+|+|+++|+.+.+.|+-+.   .+++++|+|||||+|||.. .+++|
T Consensus        91 ~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~g~~~~~ai~~~~~~l~G~fa~~i~d~~~~~~l~  170 (240)
T 1xff_A           91 EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLL  170 (240)
T ss_dssp             TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCEEEEEEEEETTCTTCEE
T ss_pred             CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcccceEEEEEecCCCCEEE
Confidence            789999999999999999986   55 3789999999999998765453111   1689999999999999986 69999


Q ss_pred             EEeeCCCCcceeeEE
Q 030864          146 VASVLAASHLLLSLK  160 (170)
Q Consensus       146 ~ARDr~G~kPLY~~~  160 (170)
                      +|||+   ||||+..
T Consensus       171 ~~Rd~---~PL~~~~  182 (240)
T 1xff_A          171 AARSG---SPLVIGL  182 (240)
T ss_dssp             EEEEB---SCCEEEE
T ss_pred             EEECC---CceEEEE
Confidence            99998   9999864

>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*

Probab=99.81  E-value=9.4e-20  Score=164.78  Aligned_cols=101  Identities=14%  Similarity=0.151  Sum_probs=82.8

Q ss_pred             EEEeCCceeeeEecCCCCCcccceecccCcEEEEEceeecCHH---HHHHHhC-CCCCCchHHHHHHHHHHhhhcCCCCc
Q 030864           46 SVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLG---SLRQQYG-LAKSANEVILVIEAYKALRDRAPYPP  121 (170)
Q Consensus        46 ~v~~g~~~~lAy~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~---eLr~~~g-~~ks~sE~~vii~aY~~~rdrGpyp~  121 (170)
                      .+.+|+ .++|...  ....|| +....++++++  |||||+.   +||+++. ..++.||+|||+++|++   ||    
T Consensus        27 ~~~igh-~R~~t~~--~~~~QP-~~~~~~~~~l~--GeI~N~~~~~eLr~~l~g~f~s~sDtEvil~l~~~---~g----   93 (503)
T 1q15_A           27 GEALSN-GYLFIEQ--NGHYQK-CEMERGTAYLI--GSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTR---LG----   93 (503)
T ss_dssp             EEEETT-EEEEEET--TCCEEE-EECSSSEEEEE--ECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHH---HC----
T ss_pred             ceeEee-eeEEEcC--CCCCCC-cCcCCCeEEEE--EEEeCCCChHHHHHHhhCCCCCCChHHHHHHHHHH---HH----
Confidence            467787 7787753  234566 34455677777  9999999   9999873 22789999999999996   56    


Q ss_pred             ccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864          122 NHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus       122 ~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~  160 (170)
                      .+++++|+|||||+|||..++ +++|||++|+|||||..
T Consensus        94 ~~~l~~l~G~fa~~i~d~~~~-l~~aRD~~G~rPL~y~~  131 (503)
T 1q15_A           94 ANALALAEGDFCFFIDEPNGE-LTVITESRGFSPVHVVQ  131 (503)
T ss_dssp             GGGGGGCCSSEEEEEECTTSC-EEEEECSSSSSCCEEEE
T ss_pred             HHHHHHcCEEEEEEEEeCCCC-EEEEECCCCCeeEEEEE
Confidence            479999999999999999998 99999999999999974

>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*

Probab=99.77  E-value=2.8e-18  Score=153.20  Aligned_cols=87  Identities=17%  Similarity=0.164  Sum_probs=71.4

Q ss_pred             ccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCC-CcccccccCCceEEEEEEeCCCCeEEE
Q 030864           72 VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPY-PPNHVVGHLSGYFAFIVYDKSTSTLFV  146 (170)
Q Consensus        72 ~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpy-p~~~~l~~L~GmFAFviyD~~~~~lf~  146 (170)
                      ..+++++++||+|||+.+||+++   |. .+++||+|+|+++|..+++..+. -..+++++|+|+|||+|||  .+++++
T Consensus        93 ~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~~~~~a~~~~~~~l~G~fa~~i~d--~~~l~~  170 (459)
T 1ao0_A           93 NNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYAFLIMT--ETEMIV  170 (459)
T ss_dssp             TTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHHTCCCSSHHHHHHHHHTTCCEEEEEEEEC--SSEEEE
T ss_pred             CCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhccceEEEEEe--CCEEEE
Confidence            45789999999999999999986   55 48999999999999963210000 0036999999999999999  589999


Q ss_pred             EeeCCCCcceeeEE
Q 030864          147 ASVLAASHLLLSLK  160 (170)
Q Consensus       147 ARDr~G~kPLY~~~  160 (170)
                      +||++|+||||+..
T Consensus       171 ~RD~~G~rPL~~~~  184 (459)
T 1ao0_A          171 ALDPNGLRPLSIGM  184 (459)
T ss_dssp             EECTTCCSCCEEEE
T ss_pred             EECCCCCCCeEEEe
Confidence            99999999999865

>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*

Probab=99.72  E-value=8.4e-17  Score=147.74  Aligned_cols=84  Identities=17%  Similarity=0.214  Sum_probs=72.3

Q ss_pred             CcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCCCc---ccccccCCceEEEEEEeCCC-CeEE
Q 030864           74 DEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGYFAFIVYDKST-STLF  145 (170)
Q Consensus        74 ~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpyp~---~~~l~~L~GmFAFviyD~~~-~~lf  145 (170)
                      +++++++||+|||+.+||+++   |+ .+++||+|+|+++|+.+.++|+-+.   .+++++|+|+|||++||..+ ++++
T Consensus        91 ~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi~~l~~~~~~~g~~~~~av~~~~~~l~G~fa~~i~d~~~~~~l~  170 (608)
T 2bpl_A           91 EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTLL  170 (608)
T ss_dssp             TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHHHHHHHTTCCCHHHHHHHHGGGCCSSEEEEEEETTCTTCEE
T ss_pred             CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcCceEEEEEecCCCCEEE
Confidence            789999999999999999986   65 3899999999999998655563100   15899999999999999998 9999


Q ss_pred             EEeeCCCCcceeeEE
Q 030864          146 VASVLAASHLLLSLK  160 (170)
Q Consensus       146 ~ARDr~G~kPLY~~~  160 (170)
                      +|||+   +|||++.
T Consensus       171 ~aRd~---~PL~~g~  182 (608)
T 2bpl_A          171 AARSG---SPLVIGL  182 (608)
T ss_dssp             EEEEB---SCCEEEE
T ss_pred             EEECC---CceEEEE
Confidence            99998   9999874

>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*

Probab=99.72  E-value=3.1e-17  Score=148.36  Aligned_cols=97  Identities=13%  Similarity=0.095  Sum_probs=74.9

Q ss_pred             CcccceecccCcEEEEEceeecCHHHHHHHh----CC-CCCCchHHHHHHHHHHhhh-cCCC---Ccc------cccccC
Q 030864           64 PLRQRSFAVKDEIFCLFEGALDNLGSLRQQY----GL-AKSANEVILVIEAYKALRD-RAPY---PPN------HVVGHL  128 (170)
Q Consensus        64 ~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~----g~-~ks~sE~~vii~aY~~~rd-rGpy---p~~------~~l~~L  128 (170)
                      -.||-..+..+++++++||+|||+.+||+++    +. .+++||+|+|+++|.++.+ +|+.   +.+      +++++|
T Consensus        84 n~QP~~~~~~~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l~~~~~~~~g~~~~~~~~~~~a~~~~~~~l  163 (504)
T 1ecf_A           84 EAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLI  163 (504)
T ss_dssp             CCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHHHHHHHHC
T ss_pred             ccCCeEeccCCCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHhccccccccccHHHHHHHhhhhc
Confidence            3455333333469999999999999999986    23 4899999999999987533 3420   001      579999


Q ss_pred             CceEEEEEEeCCCCeEEEEeeCCCCcceeeEEE
Q 030864          129 SGYFAFIVYDKSTSTLFVASVLAASHLLLSLKV  161 (170)
Q Consensus       129 ~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~~  161 (170)
                      +|+|||++||.. +++|++||++|+||||++..
T Consensus       164 ~G~fa~v~~~~~-~~l~a~RD~~GirPL~~g~~  195 (504)
T 1ecf_A          164 RGAYACVAMIIG-HGMVAFRDPNGIRPLVLGKR  195 (504)
T ss_dssp             CEEEEEEEEETT-TEEEEEECTTCCSCCEEEEE
T ss_pred             CccceEEEEEcC-CeEEEEECCCCCCceEEeec
Confidence            999999999864 47999999999999998754

>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}

Probab=99.52  E-value=8.9e-15  Score=123.91  Aligned_cols=84  Identities=13%  Similarity=0.139  Sum_probs=66.4

Q ss_pred             CcEEEEEceeecCHHHHHHHh---C----C--CCCCchHHHHHHHHHHhhhcCCCCc---ccccccCCce----------
Q 030864           74 DEIFCLFEGALDNLGSLRQQY---G----L--AKSANEVILVIEAYKALRDRAPYPP---NHVVGHLSGY----------  131 (170)
Q Consensus        74 ~~i~~vFNGEIyN~~eLr~~~---g----~--~ks~sE~~vii~aY~~~rdrGpyp~---~~~l~~L~Gm----------  131 (170)
                      +++.+++||+|||+.+||+++   |    +  .+++||+|+|+++|..++..+ -|.   .+++++|+|+          
T Consensus       107 g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi~~l~~~~~~~~-~~~~al~~~l~~l~G~~~~~g~~~~~  185 (274)
T 3mdn_A          107 RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSEGLEH-DPHGALARAIARLEGLSRAHGTTPHM  185 (274)
T ss_dssp             TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHHHHHTTTTT-CHHHHHHHHHHHHHHHHHHHSCSSSE
T ss_pred             CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHhHHhhcCcccCc
Confidence            789999999999999999875   3    2  278999999999996532111 111   1689999999          


Q ss_pred             -EEEEEEeCCCCeEEEEeeC-CCCcceeeEE
Q 030864          132 -FAFIVYDKSTSTLFVASVL-AASHLLLSLK  160 (170)
Q Consensus       132 -FAFviyD~~~~~lf~ARDr-~G~kPLY~~~  160 (170)
                       |+|+++|.  ++++++||+ +|++||+|+.
T Consensus       186 a~~~~~~d~--~~l~a~Rd~~~G~~Pll~~~  214 (274)
T 3mdn_A          186 RLSAAFSDG--QTLYAARYSSDHIAPSVYYR  214 (274)
T ss_dssp             EEEEEEECS--SCEEEEEEESSSCCCCCEEE
T ss_pred             eEEEEEEcC--CEEEEEECCCCCCCCeEEEE
Confidence             99999985  789999998 9999965543

>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1

Probab=98.46  E-value=7.5e-08  Score=80.24  Aligned_cols=82  Identities=12%  Similarity=0.042  Sum_probs=61.8

Q ss_pred             CcEEEEEceeecCHHHHHHHhCCCCCCchHHHHHHHHHHhh-hcCCC-C-cc---cccccCC------ceEEEEEEeCCC
Q 030864           74 DEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALR-DRAPY-P-PN---HVVGHLS------GYFAFIVYDKST  141 (170)
Q Consensus        74 ~~i~~vFNGEIyN~~eLr~~~g~~ks~sE~~vii~aY~~~r-drGpy-p-~~---~~l~~L~------GmFAFviyD~~~  141 (170)
                      +++.++.||.|.|+.+ |++.+...++||+|+|.++..... +.++- | .+   +.++++.      |.|+|++-|.  
T Consensus       101 ~~~a~aHNG~i~n~~~-r~~~~~~~s~TDSEvi~~li~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~G~~n~~l~~g--  177 (257)
T 1te5_A          101 RYWTFAHNGQLADFQP-KPGFYRPVGETDSEAAFCDLLNRVRRAFPEPVPVEVLLPVLISACDEYRKKGVFNALISDG--  177 (257)
T ss_dssp             EEEEEEEESCBSSCCC-CCCSSCCSSCCHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHTTBCCEEEEESS--
T ss_pred             CeEEEEecCcccCchh-hhccCCcccCCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcCcEEEEEEcC--
Confidence            5799999999999999 776433588999999988886432 22111 1 11   3555555      9999999985  


Q ss_pred             CeEEEEee----------CCCCcceee
Q 030864          142 STLFVASV----------LAASHLLLS  158 (170)
Q Consensus       142 ~~lf~ARD----------r~G~kPLY~  158 (170)
                      .+|++.||          ++|.+||..
T Consensus       178 ~~l~a~rd~~L~~~~~~~p~g~rpL~~  204 (257)
T 1te5_A          178 DWLFTFCSSKLAYITRRAPFGPARLKD  204 (257)
T ss_dssp             SCEEEECSSCEEEEEEESSCCCEEEEC
T ss_pred             CEEEEEEcCCceEEeecCCCccccccc
Confidence            78999999          999999963

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=98.13  E-value=8.7e-06  Score=82.60  Aligned_cols=79  Identities=8%  Similarity=0.013  Sum_probs=59.5

Q ss_pred             EEEceeecCHHHHHHHh------------C--------C-CCCCchHHHHHHHHHHhhhcCCCCcc--------------
Q 030864           78 CLFEGALDNLGSLRQQY------------G--------L-AKSANEVILVIEAYKALRDRAPYPPN--------------  122 (170)
Q Consensus        78 ~vFNGEIyN~~eLr~~~------------g--------~-~ks~sE~~vii~aY~~~rdrGpyp~~--------------  122 (170)
                      ++.||||.|+..+|...            |        . ..+.||+++|.++.+.|...| .+..              
T Consensus       228 laHNGeInn~~~nr~~m~are~~~~~~~~G~~l~~~~pii~~~~SDSevld~~lelL~~~g-~~l~~A~~~liPeaw~~~  306 (1479)
T 1ea0_A          228 LAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGSLDTVFEVMVRAG-RTAPMVKMMLVPQALTSS  306 (1479)
T ss_dssp             EEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHHHHHHHHHHHHHTT-CCHHHHHHHHSCCCCC--
T ss_pred             EEECChhhCHHHHHHHHHHhHhhhcCchhhhhHHhcCCcCCCCCCcHHHHHHHHHHHHHcC-CCHHHHHHHhCchhhccc
Confidence            89999999999999542            2        2 478899998855544332233 1111              


Q ss_pred             ---------------cccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeE
Q 030864          123 ---------------HVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSL  159 (170)
Q Consensus       123 ---------------~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~  159 (170)
                                     .++..++|-||+++-|.  +.+.++|||+|.+||-++
T Consensus       307 ~~m~~~~~~fye~~~~~me~~dGp~slv~~dg--~~l~a~~DrnGlRPl~~g  356 (1479)
T 1ea0_A          307 QTTPDNHKALIQYCNSVMEPWDGPAALAMTDG--RWVVGGMDRNGLRPMRYT  356 (1479)
T ss_dssp             -CCCHHHHHHHHHHHHHCCCCCSSEEEEECSS--SEEEEECCTTCCSCCEEE
T ss_pred             ccCCHHHHHHHHHHHHhhccCCCcEEEEEEeC--CEEEEEecCCCCcceEEE
Confidence                           23679999999999765  899999999999999876

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=97.98  E-value=3e-05  Score=78.90  Aligned_cols=80  Identities=9%  Similarity=0.007  Sum_probs=59.6

Q ss_pred             EEEEceeecCHHHHH------HH------h--------C--CCCCCchHHHHHHHHHHhhhcCCCCcc------------
Q 030864           77 FCLFEGALDNLGSLR------QQ------Y--------G--LAKSANEVILVIEAYKALRDRAPYPPN------------  122 (170)
Q Consensus        77 ~~vFNGEIyN~~eLr------~~------~--------g--~~ks~sE~~vii~aY~~~rdrGpyp~~------------  122 (170)
                      +++.||||.|+..+|      +.      +        +  ...+.||+++|.++.+-+-..| .+..            
T Consensus       223 ~LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SDSe~ld~~lelL~~~g-~~l~~A~~~liPeaw~  301 (1520)
T 1ofd_A          223 LLGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTG-RSPLEAAMILVPEAYK  301 (1520)
T ss_dssp             SEEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHHTT-CCHHHHHHHHSCCCCT
T ss_pred             eeEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCcHHHHHHHHHHHHhcC-CCHHHHHHHhCcchhc
Confidence            389999999999998      32      1        3  2478889988865555332223 1111            


Q ss_pred             -------------------cccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeE
Q 030864          123 -------------------HVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSL  159 (170)
Q Consensus       123 -------------------~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~  159 (170)
                                         .++..++|-||+++-|.  +.+.++|||+|.+||-|+
T Consensus       302 ~~~~m~~~~~~~~fyey~~~~me~~dGpaalv~~dg--~~l~a~~DrnGlRPl~~~  355 (1520)
T 1ofd_A          302 NQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDG--KIVGAGLDRNGLRPARYC  355 (1520)
T ss_dssp             TCGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECS--SEEEEEECTTCCSCCEEE
T ss_pred             ccccccccHHHHHHHHHHHHhcccCCCCEEEEEEeC--CEEEEEecCCCCCceEEE
Confidence                               23689999999999876  899999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d1q15a2	204	beta-Lactam synthetase {Pectobacterium carotovorum	99.94
d1ct9a2	192	Asparagine synthetase B, N-terminal domain {Escher	99.93
d1jgta2	206	beta-Lactam synthetase {Streptomyces clavuligerus	99.92
d1gph12	234	Glutamine PRPP amidotransferase, N-terminal domain	99.72
d1ecfa2	249	Glutamine PRPP amidotransferase, N-terminal domain	99.54
d1xffa_	238	Glucosamine 6-phosphate synthase, N-terminal domai	99.52
d1te5a_	253	Hypothetical protein YafJ (PA1307) {Pseudomonas ae	96.34
d1ea0a3	422	Alpha subunit of glutamate synthase, N-terminal do	91.91

>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Pectobacterium carotovorum [TaxId: 554]

Probab=99.94  E-value=1.4e-27  Score=195.07  Aligned_cols=82  Identities=17%  Similarity=0.120  Sum_probs=72.2

Q ss_pred             cccCcEEEEEceeecCHHHHHHHhC---C-CCCCchHHHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEE
Q 030864           71 AVKDEIFCLFEGALDNLGSLRQQYG---L-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFV  146 (170)
Q Consensus        71 ~~~~~i~~vFNGEIyN~~eLr~~~g---~-~ks~sE~~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~  146 (170)
                      ...++++++|||||||+.+||+++.   . .++.||||||+++|+.   ||    .+++++|+|||||+|||+ ++++++
T Consensus        45 ~~~~ry~~~~nGEIYN~~~lr~~l~~~~~~~~~~sDtEvll~~~~~---~G----~~~l~~l~G~Faf~i~~~-~~~l~l  116 (204)
T d1q15a2          45 CEMERGTAYLIGSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTR---LG----ANALALAEGDFCFFIDEP-NGELTV  116 (204)
T ss_dssp             EECSSSEEEEEECCSCHHHHHHHHTTTCGGGGGCCHHHHHHHHHHH---HC----GGGGGGCCSSEEEEEECT-TSCEEE
T ss_pred             ccCCcEEEEEEEEEcCHHHHHHHHHHcCCCccCCChHHHHHHHHHH---HH----HHHHHhhCCceEEEEecC-CceEEE
Confidence            3568999999999999999999864   3 3789999999999996   55    589999999999999775 578999


Q ss_pred             EeeCCCCcceeeEE
Q 030864          147 ASVLAASHLLLSLK  160 (170)
Q Consensus       147 ARDr~G~kPLY~~~  160 (170)
                      ||||+|+|||||..
T Consensus       117 ~RD~~G~KPLyY~~  130 (204)
T d1q15a2         117 ITESRGFSPVHVVQ  130 (204)
T ss_dssp             EECSSSSSCCEEEE
T ss_pred             EECCCCccceEEEe
Confidence            99999999999754

>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Asparagine synthetase B, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.9e-25  Score=176.92  Aligned_cols=110  Identities=18%  Similarity=0.301  Sum_probs=88.4

Q ss_pred             CCceEEEeCCceeee-----EecCCCCCcccceecccCcEEEEEceeecCHHHHHHHhCC---CCCCchHHHHHHHHHHh
Q 030864           42 SSAVSVQVGDNVTLA-----YTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGL---AKSANEVILVIEAYKAL  113 (170)
Q Consensus        42 p~a~~v~~g~~~~lA-----y~~~~q~~~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~g~---~ks~sE~~vii~aY~~~  113 (170)
                      ||+..+...+...|+     .+..+.. .+| .+...++++++|||||||+.+|++++..   ..+++|+|+++++|++ 
T Consensus        32 pD~~~~~~~~~~~lgh~Rlsi~~~~~~-~~~-~~~~~~~~~lv~NGeI~N~~~l~~~l~~~~~~~s~sDtevll~~~~~-  108 (192)
T d1ct9a2          32 PDWSGIYASDNAILAHERLSIVDVNAG-AQP-LYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQE-  108 (192)
T ss_dssp             BTEEEEEECSSEEEEEEECCCSCTTTC-CSS-EECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSCCTTHHHHHHHHH-
T ss_pred             CCCCCeEEeCCEEEEEEEEEEccccCC-ccc-ccccCCceEEEecCccchhHHHHHHHhcCcccCCCCcHHHHHHHhhh-
Confidence            998888765554444     4332222 222 2346688999999999999999999743   3678999999999995 


Q ss_pred             hhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864          114 RDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus       114 rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~  160 (170)
                        ||    .+++++|+|||||||||.++++|++|||++|+|||||..
T Consensus       109 --~g----~~~~~~l~G~fa~~i~d~~~~~l~~aRD~~G~kPLyy~~  149 (192)
T d1ct9a2         109 --KG----PEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGY  149 (192)
T ss_dssp             --HT----TTTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEE
T ss_pred             --cc----hhhhhhhhhheEEEEEecCcceeEEEEccccceeEEEEE
Confidence              56    479999999999999999999999999999999999864

>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.92  E-value=1.5e-25  Score=182.51  Aligned_cols=78  Identities=18%  Similarity=0.183  Sum_probs=71.4

Q ss_pred             CcEEEEEceeecCHHHHHHHhCCC-CCCchHHHHHHHHHHhhhcCCCCcccccccCCceEEEEEEeCCCCeEEEEeeCCC
Q 030864           74 DEIFCLFEGALDNLGSLRQQYGLA-KSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASVLAA  152 (170)
Q Consensus        74 ~~i~~vFNGEIyN~~eLr~~~g~~-ks~sE~~vii~aY~~~rdrGpyp~~~~l~~L~GmFAFviyD~~~~~lf~ARDr~G  152 (170)
                      +++++||||||||+.|||+++|.. ++.+|+|||+++|++   ||    .+++++|+|||||+|||+  +++++|||++|
T Consensus        66 ~~~~~v~NGeIyN~~eL~~~lg~~~~s~sDtEvil~l~~~---~G----~~~l~~l~G~Fa~vi~d~--~~l~laRD~~G  136 (206)
T d1jgta2          66 APTTAVLAGEIYNRDELLSVLPAGPAPEGDAELVLRLLER---YD----LHAFRLVNGRFATVVRTG--DRVLLATDHAG  136 (206)
T ss_dssp             SSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHHHHHHHH---HG----GGGGGTCCEEEEEEEEET--TEEEEEECTTC
T ss_pred             CCEEEEEEEEecCHHHHHHHhCCCCCCCCchHHHHHHhhh---hC----HHHHHHHHhhhheeeeec--ceEEEEEeccc
Confidence            568999999999999999999985 889999999999996   45    479999999999999995  68999999999


Q ss_pred             CcceeeEE
Q 030864          153 SHLLLSLK  160 (170)
Q Consensus       153 ~kPLY~~~  160 (170)
                      +|||||..
T Consensus       137 ~KPLyy~~  144 (206)
T d1jgta2         137 SVPLYTCV  144 (206)
T ss_dssp             CSCCEEEE
T ss_pred             ceeEEEEE
Confidence            99999865

>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.72  E-value=9.1e-18  Score=134.81  Aligned_cols=84  Identities=18%  Similarity=0.224  Sum_probs=70.4

Q ss_pred             ccCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCCC----cccccccCCceEEEEEEeCCCCe
Q 030864           72 VKDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYP----PNHVVGHLSGYFAFIVYDKSTST  143 (170)
Q Consensus        72 ~~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpyp----~~~~l~~L~GmFAFviyD~~~~~  143 (170)
                      ..+++++++||+|||+.+||+++   |. ..+++|+|+++++|+.+   +..-    ..+++++|+|||||+++|+  +.
T Consensus        93 ~~~~~~lvhNG~I~N~~eL~~~l~~~g~~f~~~td~e~~~~~~~~~---~~~~~~~ai~~~~~~l~G~~a~~i~~~--~~  167 (234)
T d1gph12          93 NNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRS---GHFTLKDQIKNSLSMLKGAYAFLIMTE--TE  167 (234)
T ss_dssp             TTCCEEEEEEEEETTHHHHHHHHHHTTCCBSSCCHHHHHHHHHHTC---CCSSHHHHHHHHHTTCCEEEEEEEECS--SC
T ss_pred             ccceEEEEecccccCHHHHHHHHHHcCCeeeeecchhHHHHHHHHH---hhhhHHHHHHHHHHhcCCceEEEEeec--Cc
Confidence            34789999999999999999986   55 48999999999999853   2111    1268999999999999985  67


Q ss_pred             EEEEeeCCCCcceeeEE
Q 030864          144 LFVASVLAASHLLLSLK  160 (170)
Q Consensus       144 lf~ARDr~G~kPLY~~~  160 (170)
                      ++++||+.|+||||+++
T Consensus       168 ~~~~rD~~G~~PL~~g~  184 (234)
T d1gph12         168 MIVALDPNGLRPLSIGM  184 (234)
T ss_dssp             EEEEECTTCCSCCEEEE
T ss_pred             eeEEEcCCCCcCEEEEe
Confidence            99999999999999876

>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=2.6e-14  Score=116.46  Aligned_cols=95  Identities=12%  Similarity=0.041  Sum_probs=71.8

Q ss_pred             cccceecccCcEEEEEceeecCHHHHHHHh----CC-CCCCchHHHHHHHHHHhhhcCCCC----------cccccccCC
Q 030864           65 LRQRSFAVKDEIFCLFEGALDNLGSLRQQY----GL-AKSANEVILVIEAYKALRDRAPYP----------PNHVVGHLS  129 (170)
Q Consensus        65 ~~~r~f~~~~~i~~vFNGEIyN~~eLr~~~----g~-~ks~sE~~vii~aY~~~rdrGpyp----------~~~~l~~L~  129 (170)
                      .||-+....+++++|+||+|+||.+|++++    |. .+++||+|++++++....+.....          ...++++++
T Consensus        85 ahP~~~~~~~~~~lvhNG~I~Ny~eL~~~~l~~~g~~f~s~tDtEvi~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~l~  164 (249)
T d1ecfa2          85 AQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIR  164 (249)
T ss_dssp             CSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHHHHHHHHCC
T ss_pred             ccccccCCCCcEEEEeeeeeccHHHHHHHHHHhcCccccccchHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhcC
Confidence            355232344679999999999999997652    54 488999999999887655544210          124678899


Q ss_pred             ceEEEEEEeCCCCeEEEEeeCCCCcceeeEE
Q 030864          130 GYFAFIVYDKSTSTLFVASVLAASHLLLSLK  160 (170)
Q Consensus       130 GmFAFviyD~~~~~lf~ARDr~G~kPLY~~~  160 (170)
                      |.|++++.. ....++++||+.|++|||+++
T Consensus       165 Gs~~~~~~~-~~~~~~~~rD~~GirPL~~G~  194 (249)
T d1ecfa2         165 GAYACVAMI-IGHGMVAFRDPNGIRPLVLGK  194 (249)
T ss_dssp             EEEEEEEEE-TTTEEEEEECTTCCSCCEEEE
T ss_pred             CCceEEEEe-cCCCceEEEecCCCccceecc
Confidence            999988775 446799999999999999985

>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glucosamine 6-phosphate synthase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=3.3e-14  Score=114.37  Aligned_cols=85  Identities=16%  Similarity=0.227  Sum_probs=67.3

Q ss_pred             cCcEEEEEceeecCHHHHHHHh---CC-CCCCchHHHHHHHHHHhhhcCCCC---cccccccCCceEEEEEEeCCC-CeE
Q 030864           73 KDEIFCLFEGALDNLGSLRQQY---GL-AKSANEVILVIEAYKALRDRAPYP---PNHVVGHLSGYFAFIVYDKST-STL  144 (170)
Q Consensus        73 ~~~i~~vFNGEIyN~~eLr~~~---g~-~ks~sE~~vii~aY~~~rdrGpyp---~~~~l~~L~GmFAFviyD~~~-~~l  144 (170)
                      .+++++++||+|||+.+||+++   |+ .++.+|+|+|++++..+...+.-.   ..+++++|+|||||+++|... ..+
T Consensus        90 ~~~~~~vhNG~I~N~~~L~~~L~~~g~~f~s~sDtEvi~~l~~~~~~~~~~~~e~i~~~~~~l~G~~a~~i~~~~~~~~i  169 (238)
T d1xffa_          90 SEHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMDSRHPDTL  169 (238)
T ss_dssp             ETTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCEEEEEEEEETTCTTCE
T ss_pred             CCcEEEEEcCcccCHHHHHHHHHHcCCCcccCCcchhhhhhhhHhhhcCCCHHHHHHHHHHHccCchhhhhhhccCCCEE
Confidence            4789999999999999999986   55 378899999999987654443211   125899999999999999765 677


Q ss_pred             EEEeeCCCCcceeeEE
Q 030864          145 FVASVLAASHLLLSLK  160 (170)
Q Consensus       145 f~ARDr~G~kPLY~~~  160 (170)
                      +.+||   .+|||+++
T Consensus       170 ~~~~~---~~PL~~g~  182 (238)
T d1xffa_         170 LAARS---GSPLVIGL  182 (238)
T ss_dssp             EEEEE---BSCCEEEE
T ss_pred             EEECC---CccCEEEE
Confidence            77776   48999763

>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Hypothetical protein YafJ (PA1307)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.34  E-value=0.00074  Score=52.73  Aligned_cols=85  Identities=14%  Similarity=0.040  Sum_probs=51.0

Q ss_pred             cCcEEEEEceeecCHHHHHHHhCCCCCCchHHHHHHHHH-HhhhcCCC--Ccccc---cccC------CceEEEEEEeCC
Q 030864           73 KDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYK-ALRDRAPY--PPNHV---VGHL------SGYFAFIVYDKS  140 (170)
Q Consensus        73 ~~~i~~vFNGEIyN~~eLr~~~g~~ks~sE~~vii~aY~-~~rdrGpy--p~~~~---l~~L------~GmFAFviyD~~  140 (170)
                      .+++.++.||.|.|+.+|+..+.. ++++|+|++.+... .+++..+.  +.+.+   +.++      .+.+.|+++|..
T Consensus        99 ~~~~~f~HNG~i~n~~~l~~~~~~-~g~tDse~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~dg~  177 (253)
T d1te5a_          99 GRYWTFAHNGQLADFQPKPGFYRP-VGETDSEAAFCDLLNRVRRAFPEPVPVEVLLPVLISACDEYRKKGVFNALISDGD  177 (253)
T ss_dssp             TEEEEEEEESCBSSCCCCCCSSCC-SSCCHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHHHTTBCCEEEEESSS
T ss_pred             CCCEEEEEeeeEechhhhhhhhcc-cCCCccchhHHHHHHHHHhccccCCchHHHHHHHHHHHHhhccceEEEEEccCCC
Confidence            467899999999999999876643 45666665544442 33333332  11222   2121      468888888864


Q ss_pred             C------CeEEEEeeCCCCcceee
Q 030864          141 T------STLFVASVLAASHLLLS  158 (170)
Q Consensus       141 ~------~~lf~ARDr~G~kPLY~  158 (170)
                      .      ......||+.|..|+++
T Consensus       178 ~l~a~~~~~~~~~~~~~~~~~~~~  201 (253)
T d1te5a_         178 WLFTFCSSKLAYITRRAPFGPARL  201 (253)
T ss_dssp             CEEEECSSCEEEEEEESSCCCEEE
T ss_pred             EEEEEecCCceEEEEccCCCceee
Confidence            2      22223567777777763

>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Azospirillum brasilense [TaxId: 192]

Probab=91.91  E-value=0.26  Score=42.22  Aligned_cols=34  Identities=12%  Similarity=0.036  Sum_probs=28.8

Q ss_pred             ccccCCceEEEEEEeCCCCeEEEEeeCCCCcce-eeE
Q 030864          124 VVGHLSGYFAFIVYDKSTSTLFVASVLAASHLL-LSL  159 (170)
Q Consensus       124 ~l~~L~GmFAFviyD~~~~~lf~ARDr~G~kPL-Y~~  159 (170)
                      +....+|-.|++.-|.  +.+.+..||+|-+|+ |+.
T Consensus       323 ~~epwdGPA~i~ftdg--~~~ga~lDRnGLRP~ry~~  357 (422)
T d1ea0a3         323 VMEPWDGPAALAMTDG--RWVVGGMDRNGLRPMRYTI  357 (422)
T ss_dssp             HCCCCCSSEEEEECSS--SEEEEECCTTCCSCCEEEE
T ss_pred             hccccCCCeEEEEecC--CEEEEEecCCCCCcceEEE
Confidence            4556699999999985  889999999999999 754