Citrus Sinensis ID: 030868

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MDTSSILPLPQLSFLSLRLNRNKASWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHVEKEK
Secondary Structure (PSIPRED)
cccccccccccccHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mdtssilplpqlsfLSLRLnrnkaswpcnlqrsprstgtihcqkmyvpgfgeaspeakgakhlHNFFTYIAVRIITAQLQSYNPEAYKELMEFLerhplndgdkFCADLMRESSRHKGLALRILEVRSAYCkrdfewdnLKRLAIKTVDESNTRLMRDYVLETSHVEKEK
Flexible Loop (DISEMBL)
mdtssilplpqLSFLSLRLNRNKAswpcnlqrsprstgtiHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCkrdfewdnlkrlaiktvdesntrlmrdyvletshvekek
Low Complexity Region (SEG)
MDTSSILPLPQLSFLSLRLNRNKASWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHVEKEK
Disordered region (IsUnstruct)
***********LSFLSLRLNRNKASWPCNLQ*****TGTIHCQKMYVPGFGEA***AKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVL*********
Disordered Region (DISOPRED)
**********QLSFLS*****************************YVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDY***********
Disordered Region (DISEMBL)
MDTSSILPLPQLSFLSLRLNRNKASWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHVEKEK
Disordered Region (DISPRO)
********LPQLSFLSLRLNRNKASWPCN*********TIHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSH*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDTSSILPLPQLSFLSLRLNRNKASWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHVEKEK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
359483327	172	PREDICTED: uncharacterized protein LOC10	0.976	0.965	0.755	1e-66
302144090	186	unnamed protein product [Vitis vinifera]	0.976	0.892	0.755	1e-66
255554783	173	conserved hypothetical protein [Ricinus	0.988	0.971	0.719	7e-65
224113745	172	predicted protein [Populus trichocarpa]	0.958	0.947	0.746	1e-61
356532205	172	PREDICTED: uncharacterized protein LOC10	0.994	0.982	0.664	6e-61
363806848	172	uncharacterized protein LOC100803175 [Gl	0.994	0.982	0.653	1e-60
449433988	173	PREDICTED: uncharacterized protein LOC10	0.770	0.757	0.793	2e-57
449531049	133	PREDICTED: uncharacterized LOC101222925	0.770	0.984	0.793	3e-57
18412539	174	Chaperonin-like RbcX protein [Arabidopsi	0.852	0.833	0.721	2e-55
297813821	175	predicted protein [Arabidopsis lyrata su	0.870	0.845	0.681	3e-54

>gi|359483327|ref|XP_002264370.2| PREDICTED: uncharacterized protein LOC100252097 [Vitis vinifera]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 140/168 (83%), Gaps = 2/168 (1%)

Query: 1   MDTSSILPLPQLSFLSLRLNRNKASWPCNLQRSPRSTGT-IHCQKMYVPGFGEASPEAKG 59
           M+ S+I P  QLSF S R +R +A +P    +   S  T IHCQKMYV GFGEASPEAK 
Sbjct: 5   MEASAISPSAQLSFFSYRPDRTRA-YPSRPWKQRISQPTRIHCQKMYVAGFGEASPEAKA 63

Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           AK++HNFFTYIAVRI+TAQLQSYNPEAY+ELMEFL RH L+DGDKFC+DLMRESSRHKGL
Sbjct: 64  AKNIHNFFTYIAVRIVTAQLQSYNPEAYEELMEFLSRHSLSDGDKFCSDLMRESSRHKGL 123

Query: 120 ALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHVE 167
           ALRILEVRSAYCK DFEWDNLKRLA K VDESNT +MRDYVLETSH E
Sbjct: 124 ALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTGIMRDYVLETSHSE 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302144090|emb|CBI23195.3| unnamed protein product [Vitis vinifera]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 140/168 (83%), Gaps = 2/168 (1%)

Query: 1   MDTSSILPLPQLSFLSLRLNRNKASWPCNLQRSPRSTGT-IHCQKMYVPGFGEASPEAKG 59
           M+ S+I P  QLSF S R +R +A +P    +   S  T IHCQKMYV GFGEASPEAK 
Sbjct: 19  MEASAISPSAQLSFFSYRPDRTRA-YPSRPWKQRISQPTRIHCQKMYVAGFGEASPEAKA 77

Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           AK++HNFFTYIAVRI+TAQLQSYNPEAY+ELMEFL RH L+DGDKFC+DLMRESSRHKGL
Sbjct: 78  AKNIHNFFTYIAVRIVTAQLQSYNPEAYEELMEFLSRHSLSDGDKFCSDLMRESSRHKGL 137

Query: 120 ALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHVE 167
           ALRILEVRSAYCK DFEWDNLKRLA K VDESNT +MRDYVLETSH E
Sbjct: 138 ALRILEVRSAYCKNDFEWDNLKRLAFKMVDESNTGIMRDYVLETSHSE 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554783|ref|XP_002518429.1| conserved hypothetical protein [Ricinus communis] gi|223542274|gb|EEF43816.1| conserved hypothetical protein [Ricinus communis]

 Score =  251 bits (641), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 123/171 (71%), Positives = 142/171 (83%), Gaps = 3/171 (1%)

Query: 1   MDTSSILPLPQLSFLSLRLNRNKA--SWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEAK 58
           M + ++L   QLS  S + N NKA  SWPC   R+ +ST  + CQKMYVPGFGEASPEAK
Sbjct: 1   MGSYAVLSPCQLSVCSPKSNWNKAYPSWPCKKLRTAQST-RLRCQKMYVPGFGEASPEAK 59

Query: 59  GAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKG 118
            AK+LHNFFTY+AVRI+TAQLQSYNPEAY+ELM FL RH LNDGD+FCA+LMRESSRHK 
Sbjct: 60  AAKNLHNFFTYVAVRIVTAQLQSYNPEAYEELMGFLSRHSLNDGDEFCANLMRESSRHKS 119

Query: 119 LALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHVEKE 169
           LALRILEVRSAYCK DFEWDNL+RLA K V +SNTRLMRDY+ ET+HV++E
Sbjct: 120 LALRILEVRSAYCKNDFEWDNLQRLAHKMVGDSNTRLMRDYIRETTHVDRE 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113745|ref|XP_002316559.1| predicted protein [Populus trichocarpa] gi|222859624|gb|EEE97171.1| predicted protein [Populus trichocarpa]

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 124/166 (74%), Positives = 142/166 (85%), Gaps = 3/166 (1%)

Query: 1   MDTSSILPLPQLSFLSLRLNRNKA--SWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEAK 58
           M+TSS+L L QLSF   +  RNKA  SW C   R+ + T  ++CQKMYVPGFGEASPE K
Sbjct: 1   METSSVLSLSQLSFFLPKPYRNKAYPSWSCKKPRTTQPT-RLYCQKMYVPGFGEASPEKK 59

Query: 59  GAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKG 118
            AK+LH+FFTYIAVRI+TAQL+SY+PEAY+ELMEFL RH LNDGDKFCA+LMRESSRHKG
Sbjct: 60  AAKNLHDFFTYIAVRIVTAQLESYSPEAYEELMEFLSRHSLNDGDKFCAELMRESSRHKG 119

Query: 119 LALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETS 164
           LA+RILEVRSAYCK DFEWDNLKRL++K VDESNT LMRDYV+ETS
Sbjct: 120 LAMRILEVRSAYCKNDFEWDNLKRLSVKMVDESNTSLMRDYVVETS 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532205|ref|XP_003534664.1| PREDICTED: uncharacterized protein LOC100820127 [Glycine max]

 Score =  238 bits (607), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 115/173 (66%), Positives = 136/173 (78%), Gaps = 4/173 (2%)

Query: 1   MDTSSILPLPQLSFL---SLRLNRNKASWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEA 57
           M+  + LPL QL ++   +L  N+    W C  + S R T  +HC KM+VPGFGEASPEA
Sbjct: 1   MEFCATLPLSQLPYVYPSTLSSNKAYPFWSCKRRISSRPT-RLHCSKMFVPGFGEASPEA 59

Query: 58  KGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHK 117
           K A++LHNFFT++AV+I+ AQL+SYN EAY+ELMEFL RH LNDGDKFCA + RESSRHK
Sbjct: 60  KAAENLHNFFTFVAVKIVAAQLESYNHEAYEELMEFLSRHSLNDGDKFCATMFRESSRHK 119

Query: 118 GLALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHVEKEK 170
            LALRI+EVRSAYCK DFEWDN+KRLA K V ESNTRLM +YVLETSHVE EK
Sbjct: 120 NLALRIMEVRSAYCKNDFEWDNMKRLAFKMVTESNTRLMTEYVLETSHVETEK 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806848|ref|NP_001242292.1| uncharacterized protein LOC100803175 [Glycine max] gi|255640618|gb|ACU20594.1| unknown [Glycine max]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 113/173 (65%), Positives = 135/173 (78%), Gaps = 4/173 (2%)

Query: 1   MDTSSILPLPQLSFL---SLRLNRNKASWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEA 57
           M++ + LPL QL ++   +L  N+    WPC  +RS      +HC KM+VPGFGEASPEA
Sbjct: 1   MESCATLPLSQLPYVYPSTLSSNKAYPFWPCK-RRSSSQPTRLHCSKMFVPGFGEASPEA 59

Query: 58  KGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHK 117
           K A++LHNFFT++AV+I+ AQL+SYN EAY+E MEFL RH LNDGDKFCA + RESSRHK
Sbjct: 60  KAAQNLHNFFTFVAVKIVAAQLESYNHEAYEEPMEFLSRHSLNDGDKFCASMFRESSRHK 119

Query: 118 GLALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHVEKEK 170
            LALRI+EVRSAYCK DFEWDN+KRLA K V ESNTRLM +YVLETSHV  EK
Sbjct: 120 NLALRIMEVRSAYCKNDFEWDNMKRLAFKMVTESNTRLMTEYVLETSHVGTEK 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433988|ref|XP_004134778.1| PREDICTED: uncharacterized protein LOC101222925 [Cucumis sativus]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/131 (79%), Positives = 116/131 (88%)

Query: 40  IHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPL 99
           +HC KMYVPGFGEASPE+K A++LHNFFTY+AVRI+TAQL+SYNPEAY ELMEFL+RH L
Sbjct: 43  LHCSKMYVPGFGEASPESKAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSL 102

Query: 100 NDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDY 159
           NDGDKF A LMRESSRHK LALRILEVRSAYCK DFEWDNLKRLA K V ESNTR+MR+Y
Sbjct: 103 NDGDKFLASLMRESSRHKALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREY 162

Query: 160 VLETSHVEKEK 170
           + ETS  + EK
Sbjct: 163 LTETSPSDTEK 173

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531049|ref|XP_004172500.1| PREDICTED: uncharacterized LOC101222925 [Cucumis sativus]

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/131 (79%), Positives = 116/131 (88%)

Query: 40  IHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPL 99
           +HC KMYVPGFGEASPE+K A++LHNFFTY+AVRI+TAQL+SYNPEAY ELMEFL+RH L
Sbjct: 3   LHCSKMYVPGFGEASPESKAARNLHNFFTYVAVRIVTAQLESYNPEAYLELMEFLDRHSL 62

Query: 100 NDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDY 159
           NDGDKF A LMRESSRHK LALRILEVRSAYCK DFEWDNLKRLA K V ESNTR+MR+Y
Sbjct: 63  NDGDKFLASLMRESSRHKALALRILEVRSAYCKNDFEWDNLKRLAFKMVSESNTRIMREY 122

Query: 160 VLETSHVEKEK 170
           + ETS  + EK
Sbjct: 123 LTETSPSDTEK 133

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412539|ref|NP_567263.1| Chaperonin-like RbcX protein [Arabidopsis thaliana] gi|15027851|gb|AAK76456.1| unknown protein [Arabidopsis thaliana] gi|23296672|gb|AAN13142.1| unknown protein [Arabidopsis thaliana] gi|332656979|gb|AEE82379.1| Chaperonin-like RbcX protein [Arabidopsis thaliana]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/147 (72%), Positives = 122/147 (82%), Gaps = 2/147 (1%)

Query: 24  ASWPCNLQRSPRSTGTIHC-QKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSY 82
            S+P  +Q S +   T  C  KMYVPGFGEASPEAK AKHLH+FFTY+AVRI++AQL+SY
Sbjct: 26  VSYPL-MQSSRKCKQTRICSNKMYVPGFGEASPEAKAAKHLHDFFTYVAVRIVSAQLESY 84

Query: 83  NPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDFEWDNLKR 142
           NPEAY EL EFL+ + ++DGDKFCA LMR SSRH  LALRILEVRSAYCK DFEWDN+KR
Sbjct: 85  NPEAYMELREFLDTNSVSDGDKFCATLMRRSSRHMNLALRILEVRSAYCKNDFEWDNMKR 144

Query: 143 LAIKTVDESNTRLMRDYVLETSHVEKE 169
           LA K VD+SNTRLMR+YVLETSHVE +
Sbjct: 145 LAFKNVDDSNTRLMREYVLETSHVETD 171

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813821|ref|XP_002874794.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320631|gb|EFH51053.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 109/160 (68%), Positives = 123/160 (76%), Gaps = 12/160 (7%)

Query: 10  PQLSFLSLRLNRNKASWPCNLQRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNFFTY 69
           P LSF  +R +R      C   R       I   KMYVPGFGEASPEAK AKHLH+FFTY
Sbjct: 25  PLLSFALMRNSR-----KCKKTR-------ICSNKMYVPGFGEASPEAKAAKHLHDFFTY 72

Query: 70  IAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSA 129
           +AVRI++AQL+SYNPEAY EL EFL+ + ++DGDKFCA LMR SSRH  LALRILEVRSA
Sbjct: 73  VAVRIVSAQLESYNPEAYMELREFLDTNSVSDGDKFCATLMRRSSRHMNLALRILEVRSA 132

Query: 130 YCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHVEKE 169
           YCK +FEWDNLKRLA K VD SNTRLMR+YVLETSHVE +
Sbjct: 133 YCKNNFEWDNLKRLAFKNVDGSNTRLMREYVLETSHVETD 172

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:2134877	174	RbcX1 "AT4G04330" [Arabidopsis	0.976	0.954	0.662	1.3e-54
TAIR|locus:505006621	203	RbcX2 "AT5G19855" [Arabidopsis	0.576	0.482	0.317	0.00051

TAIR|locus:2134877 RbcX1 "AT4G04330" [Arabidopsis thaliana (taxid:3702)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 112/169 (66%), Positives = 134/169 (79%)

Query:     3 TSSILPLPQLSFLSLRLNRNK-ASWPCNLQRSPRSTGTIHCQ-KMYVPGFGEASPEAKGA 60
             +SS+L    LS+L+ +  +    S+P  +Q S +   T  C  KMYVPGFGEASPEAK A
Sbjct:     4 SSSLLHHSYLSYLNPKFGKRPLVSYPL-MQSSRKCKQTRICSNKMYVPGFGEASPEAKAA 62

Query:    61 KHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLA 120
             KHLH+FFTY+AVRI++AQL+SYNPEAY EL EFL+ + ++DGDKFCA LMR SSRH  LA
Sbjct:    63 KHLHDFFTYVAVRIVSAQLESYNPEAYMELREFLDTNSVSDGDKFCATLMRRSSRHMNLA 122

Query:   121 LRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHVEKE 169
             LRILEVRSAYCK DFEWDN+KRLA K VD+SNTRLMR+YVLETSHVE +
Sbjct:   123 LRILEVRSAYCKNDFEWDNMKRLAFKNVDDSNTRLMREYVLETSHVETD 171

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0044183 "protein binding involved in protein folding" evidence=IDA

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:505006621 RbcX2 "AT5G19855" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 0.00051, P = 0.00051
 Identities = 33/104 (31%), Positives = 50/104 (48%)

Query:    61 KHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLA 120
             K + N+FTY AVR +  QL   NP  Y      +  +   DG +F   L +ES     LA
Sbjct:    94 KQIVNYFTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQE---LA 150

Query:   121 LRILEVR-SAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLET 163
              R++  R   Y K   + D+ K    + + + N  LMR+ ++ET
Sbjct:   151 ERVMITRLHLYGKWIKKCDHGK--IYQEISDENLALMRERLMET 192


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      170       170   0.00086  108 3  11 22  0.38    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  163 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.60u 0.10s 15.70t   Elapsed:  00:00:01
  Total cpu time:  15.60u 0.10s 15.70t   Elapsed:  00:00:01
  Start:  Fri May 10 01:14:31 2013   End:  Fri May 10 01:14:32 2013

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0044183 "protein binding involved in protein folding" evidence=IDA

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	170
pfam02341	111	pfam02341, RcbX, RbcX protein	1e-11

>gnl|CDD|202210 pfam02341, RcbX, RbcX protein

 Score = 57.8 bits (140), Expect = 1e-11
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           AK L ++ TY AVR +  QL   NP     L +F     + DG+ +  +L++E+     L
Sbjct: 11  AKVLQSYLTYQAVRTVLDQLSETNPPLAIWLHQFSASGKIQDGEAYLEELLQEN---PEL 67

Query: 120 ALRILEVR 127
           ALRI+ VR
Sbjct: 68  ALRIMTVR 75

The RBCX protein has been identified as having a possible chaperone-like function. The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RuBisCO in Anabaena sp. CA. RbcX has been shown to possess a chaperone-like function assisting correct folding of RuBisCO in E. coli expression studies and is needed for RuBisCO to reach its maximal activity. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
PF02341	111	RcbX: RbcX protein; InterPro: IPR003435 The RbcX p	100.0

>PF02341 RcbX: RbcX protein; InterPro: IPR003435 The RbcX protein has been identified as having a possible chaperonin-like function []

Probab=100.00  E-value=2.7e-46  Score=287.09  Aligned_cols=105  Identities=43%  Similarity=0.692  Sum_probs=101.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHhcCCCCCHHHHHHHHHhcccCChhhHHHHHHHHHHHhhccc
Q 030868           56 EAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDF  135 (170)
Q Consensus        56 E~kaak~L~~yfTy~AvR~Vl~QL~e~np~~y~wL~~Fl~~~pl~DGd~fL~~Lmre~~~~~~LA~RIMevR~~ya~~~F  135 (170)
                      .+|||++|++||||+|||||++||+||||+.|.||++|+++||++|||+||++||+|+   ++||+|||+||+|||+++|
T Consensus         7 ~kdtak~L~~yfTy~Avr~Vl~QL~etnp~~~~wL~~F~~~~~~~DGd~fl~~L~~e~---~~LA~RIM~vR~~la~~~~   83 (111)
T PF02341_consen    7 AKDTAKVLQSYFTYQAVRTVLAQLYETNPPAYIWLYNFLSRNPLQDGDAFLEALMREN---QELALRIMEVREHLAEEVF   83 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHSTCSSHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCccHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999999999999999999997   9999999999999999998


Q ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHhhhcc
Q 030868          136 EWDNLKRLAIKTVDESNTRLMRDYVLETSH  165 (170)
Q Consensus       136 eWd~lk~la~k~i~~~N~~LMRe~l~et~~  165 (170)
                      ||  +++++.+.|+++|+++||+||+++++
T Consensus        84 d~--l~em~~~~I~~~N~e~~R~~L~r~t~  111 (111)
T PF02341_consen   84 DF--LPEMVREGIQQANMELMRQYLERMTQ  111 (111)
T ss_dssp             GG--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH--hHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            87  99999999999999999999999874

The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RubisCO in Anabaena sp. (strain CA / ATCC 33047). RbcX has been shown to possess a chaperonin-like function assisting correct folding of RubisCO in Escherichia coli expression studies and is needed for RubisCO to reach its maximal activity [].; PDB: 2PEM_B 2PEI_L 2PEK_A 2Z46_E 2Z44_A 2PEJ_F 2PEN_D 2PEQ_B 2Z45_A 3Q20_A ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	170
4gr2_A	128	Structure Of Atrbcx1 From Arabidopsis Thaliana. Len		2e-55
2pem_A	134	Crystal Structure Of Rbcx In Complex With Substrate		4e-08
2pek_A	134	Crystal Structure Of Rbcx Point Mutant Q29a Length		3e-07
2pej_A	134	Crystal Structure Of Rbcx Point Mutant Y17aY20L Len		1e-06
2z44_A	134	Crystal Structure Of Selenomethionine-Labeled Orf13		2e-06
2pei_A	109	Crystal Structure Of Selenomethionine-Labeled Rbcx		3e-06
2py8_A	147	Rbcx Length = 147		1e-04
2peo_A	155	Crystal Structure Of Rbcx From Anabaena Ca Length =		2e-04
4gr6_A	126	Crystal Structure Of Atrbcx2 From Arabidopsis Thali		7e-04
3q20_A	126	Crystal Structure Of Rbcx C103a Mutant From Thermos		8e-04

>pdb|4GR2|A Chain A, Structure Of Atrbcx1 From Arabidopsis Thaliana. Length = 128

Iteration: 1
 Score =  211 bits (536), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 97/125 (77%), Positives = 110/125 (88%)
Query: 45  MYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDK 104
           MYVPGFGEASPEAK AKHLH+FFTY+AVRI++AQL+SYNPEAY EL EFL+ + ++DGDK
Sbjct: 1   MYVPGFGEASPEAKAAKHLHDFFTYVAVRIVSAQLESYNPEAYMELREFLDTNSVSDGDK 60
Query: 105 FCADLMRESSRHKGLALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETS 164
           F A LMR SSRH  LALRILEVRSAY K DFEWDN+KRLA K VD+SNTRLMR+YVLETS
Sbjct: 61  FLATLMRRSSRHMNLALRILEVRSAYAKNDFEWDNMKRLAFKNVDDSNTRLMREYVLETS 120
Query: 165 HVEKE 169
           HVE +
Sbjct: 121 HVETD 125

>pdb|2PEM|A Chain A, Crystal Structure Of Rbcx In Complex With Substrate Length = 134

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           A  L ++ TY AVR+I+ QL   NP     L EF +RHP+ + D +   +M E   +K L
Sbjct: 11  AITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLE---NKEL 67
Query: 120 ALRILEVRSAYCKRDFEWDNLKRLAIKTVDESN 152
            LRIL VR    +   E+  L  + +  + +SN
Sbjct: 68  VLRILTVRENLAEGVLEF--LPEMVLSQIKQSN 98

>pdb|2PEK|A Chain A, Crystal Structure Of Rbcx Point Mutant Q29a Length = 134

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           A  L ++ TY AVR+I+  L   NP     L EF +RHP+ + D +   +M E   +K L
Sbjct: 11  AITLQSYLTYQAVRLISQALSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLE---NKEL 67
Query: 120 ALRILEVRSAYCKRDFEWDNLKRLAIKTVDESN 152
            LRIL VR    +   E+  L  + +  + +SN
Sbjct: 68  VLRILTVRENLAEGVLEF--LPEMVLSQIKQSN 98

>pdb|2PEJ|A Chain A, Crystal Structure Of Rbcx Point Mutant Y17aY20L Length = 134

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           A  L +  T  AVR+I+ QL   NP     L EF +RHP+ + D +   +M E   +K L
Sbjct: 11  AITLQSALTLQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLE---NKEL 67
Query: 120 ALRILEVRSAYCKRDFEWDNLKRLAIKTVDESN 152
            LRIL VR    +   E+  L  + +  + +SN
Sbjct: 68  VLRILTVRENLAEGVLEF--LPEMVLSQIKQSN 98

>pdb|2Z44|A Chain A, Crystal Structure Of Selenomethionine-Labeled Orf134 Length = 134

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           A  L ++ TY AVR+I+ QL   NP     L EF +RHP+ + D +      E   +K L
Sbjct: 11  AITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAXXLE---NKEL 67
Query: 120 ALRILEVRSAYCKRDFEWDNLKRLAIKTVDESN 152
            LRIL VR    +   E+  L    +  + +SN
Sbjct: 68  VLRILTVRENLAEGVLEF--LPEXVLSQIKQSN 98

>pdb|2PEI|A Chain A, Crystal Structure Of Selenomethionine-Labeled Rbcx Length = 109

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           A  L ++ TY AVR+I+ QL   NP     L EF +RHP+ + D +      E   +K L
Sbjct: 11  AITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAXXLE---NKEL 67
Query: 120 ALRILEVRSAYCKRDFEWDNLKRLAIKTVDESN 152
            LRIL VR    +   E+  L    +  + +SN
Sbjct: 68  VLRILTVRENLAEGVLEF--LPEXVLSQIKQSN 98

>pdb|2PY8|A Chain A, Rbcx Length = 147

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
            K L ++ TY AV  I ++L   NP     L ++L  H + +G+ F  +L+ E   +K L
Sbjct: 11  VKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDE---NKEL 67
Query: 120 ALRILEVR 127
            LRIL VR
Sbjct: 68  VLRILAVR 75

>pdb|2PEO|A Chain A, Crystal Structure Of Rbcx From Anabaena Ca Length = 155

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 60  AKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGL 119
           AK L ++ TY A+R + AQL   NP     L  F     + DG+K+  +L  E      L
Sbjct: 31  AKTLQSYLTYQALRTVLAQLGETNPPLALWLHNF-SAGKVQDGEKYIEELFLEKP---DL 86
Query: 120 ALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHV 166
           ALRI+ VR    +   E+  L  + +  + ++N    R ++   + V
Sbjct: 87  ALRIMTVREHIAEEIAEF--LPEMVVTGIQQANMEKRRQHLERMTQV 131

>pdb|4GR6|A Chain A, Crystal Structure Of Atrbcx2 From Arabidopsis Thaliana Length = 126

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 61  KHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLA 120
           K + N+FTY AVR +  QL   NP  Y      +  +   DG +F   L +ES     LA
Sbjct: 17  KQIVNYFTYKAVRTVLHQLYEMNPPQYTWFYNHIITNRPTDGKRFLRALGKESQE---LA 73
Query: 121 LRILEVR-SAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLET 163
            R++  R   Y K   + D+ K    + + + N  LMR+ ++ET
Sbjct: 74  ERVMITRLHLYGKWIKKADHGK--IYQEISDENLALMRERLMET 115

>pdb|3Q20|A Chain A, Crystal Structure Of Rbcx C103a Mutant From Thermosynechococcus Elongatus Length = 126

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 58  KGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHK 117
           +  K L ++ TY AVR +  QL   +P     L +F  +  + DG+++   L RE     
Sbjct: 9   QTTKTLISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFRE---QP 65
Query: 118 GLALRILEVR 127
            L  RIL VR
Sbjct: 66  DLGFRILTVR 75

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
2peq_A	134	ORF134; helix bundle, protein complex assembly, ch	1e-37
3ka1_A	126	RBCX protein; chaperone, helix bundle, rubisco ass	4e-36
3hyb_A	155	RBCX protein; rubisco, protein complex assembly, c	1e-34
2py8_A	147	Hypothetical protein RBCX; all helical fold, chape	9e-32

>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A Length = 134

 Score =  125 bits (314), Expect = 1e-37
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 5/112 (4%)

Query: 58  KGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHK 117
           + A  L ++ TY AVR+I+ QL   NP     L EF +RHP+ + D +   +M E+   K
Sbjct: 9   ETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLEN---K 65

Query: 118 GLALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHVEKE 169
            L LRIL VR    +   E+  L  + +  + +SN    R  +   + V+  
Sbjct: 66  ELVLRILTVRENLAEGVLEF--LPEMVLSQIKQSNGNHRRSLLERLTQVDSS 115

>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C Length = 155

 Score =  118 bits (296), Expect = 1e-34
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 11/139 (7%)

Query: 31  QRSPRSTGTIHCQKMYVPGFGEASPEAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKEL 90
                S        M +    +       AK L ++ TY A+R + AQL   NP     L
Sbjct: 7   HHHHSSGLVPRGSHMNLKQIAK-----DTAKTLQSYLTYQALRTVLAQLGETNPPLALWL 61

Query: 91  MEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDFEWDNLKRLAIKTVDE 150
             F       DG+K+  +L  E      LALRI+ VR    +   E+  L  + +  + +
Sbjct: 62  HNFSAGKV-QDGEKYIEELFLEKPD---LALRIMTVREHIAEEIAEF--LPEMVVTGIQQ 115

Query: 151 SNTRLMRDYVLETSHVEKE 169
           +N    R ++   + V   
Sbjct: 116 ANMEKRRQHLERMTQVSLS 134

>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1 Length = 147

 Score =  110 bits (276), Expect = 9e-32
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 5/112 (4%)

Query: 58  KGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHK 117
              K L ++ TY AV  I ++L   NP     L ++L  H + +G+ F  +L+ E+    
Sbjct: 9   ATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKE-- 66

Query: 118 GLALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHVEKE 169
            L LRIL VR    +   ++  L  +   ++ ESN    R  +   +    E
Sbjct: 67  -LVLRILAVREDIAESVLDF--LPGMTRNSLAESNIAHRRHLLERLTRTVAE 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
2peq_A	134	ORF134; helix bundle, protein complex assembly, ch	100.0
2py8_A	147	Hypothetical protein RBCX; all helical fold, chape	100.0
3ka1_A	126	RBCX protein; chaperone, helix bundle, rubisco ass	100.0
3hyb_A	155	RBCX protein; rubisco, protein complex assembly, c	100.0

>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A

Probab=100.00  E-value=3.5e-45  Score=287.48  Aligned_cols=108  Identities=31%  Similarity=0.476  Sum_probs=100.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHhcCCCCCHHHHHHHHHhcccCChhhHHHHHHHHHHHhhccc
Q 030868           56 EAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDF  135 (170)
Q Consensus        56 E~kaak~L~~yfTy~AvR~Vl~QL~e~np~~y~wL~~Fl~~~pl~DGd~fL~~Lmre~~~~~~LA~RIMevR~~ya~~~F  135 (170)
                      ++|||++|++||||+|||||++||+||||++|.||++|+++||++|||+||++||+|+   ++||+|||+||+|||+++ 
T Consensus         7 ~~daAk~L~~yfTy~AvR~Vl~QL~e~np~~~~wL~~F~~~~~l~DGd~fL~~L~~e~---~~LAlRIM~VRe~ya~e~-   82 (134)
T 2peq_A            7 AKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLEN---KELVLRILTVRENLAEGV-   82 (134)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCTTSHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcCCCccHHHHHHHHHhHC---HHHHHHHHHHHHHHHHHH-
Confidence            5899999999999999999999999999999999999999999999999999999998   999999999999999996 


Q ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHhhhccccc
Q 030868          136 EWDNLKRLAIKTVDESNTRLMRDYVLETSHVEK  168 (170)
Q Consensus       136 eWd~lk~la~k~i~~~N~~LMRe~l~et~~~e~  168 (170)
                       |+++++++++.|+++|++|||+||++.++++.
T Consensus        83 -~e~l~~m~~~~I~~~N~~lmR~~ler~t~~~~  114 (134)
T 2peq_A           83 -LEFLPEMVLSQIKQSNGNHRRSLLERLTQVDS  114 (134)
T ss_dssp             -GGGHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence             77899999999999999999999999998863

>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1

Probab=100.00  E-value=2.9e-45  Score=291.64  Aligned_cols=107  Identities=28%  Similarity=0.434  Sum_probs=104.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHhcCCCCCHHHHHHHHHhcccCChhhHHHHHHHHHHHhhccc
Q 030868           56 EAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDF  135 (170)
Q Consensus        56 E~kaak~L~~yfTy~AvR~Vl~QL~e~np~~y~wL~~Fl~~~pl~DGd~fL~~Lmre~~~~~~LA~RIMevR~~ya~~~F  135 (170)
                      .+|||++|++||||+||||||+||+|+||+.|.||++|+++|||+|||+||++||+|+   ++||+|||+||+|||+++|
T Consensus         7 ~kdaAk~L~~yfTy~AvR~VL~QL~EtNP~~y~wL~~Fl~~npl~DGd~fL~~Lmre~---~~LAlRIMeVR~~ya~e~f   83 (147)
T 2py8_A            7 AQATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDEN---KELVLRILAVREDIAESVL   83 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCSSHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcCCCccHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999999999999999999997   9999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHhhhcccc
Q 030868          136 EWDNLKRLAIKTVDESNTRLMRDYVLETSHVE  167 (170)
Q Consensus       136 eWd~lk~la~k~i~~~N~~LMRe~l~et~~~e  167 (170)
                      ||  +++++++.|+++|++|||+||++.++++
T Consensus        84 e~--l~em~~~~I~~~N~elmRq~leR~t~~~  113 (147)
T 2py8_A           84 DF--LPGMTRNSLAESNIAHRRHLLERLTRTV  113 (147)
T ss_dssp             GG--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99  9999999999999999999999988765

>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C

Probab=100.00  E-value=3.9e-42  Score=274.98  Aligned_cols=116  Identities=28%  Similarity=0.410  Sum_probs=100.7

Q ss_pred             eecCCCCCCh---hhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHhcCCCCCHHHHHHHHHhcccCChhhHHH
Q 030868           46 YVPGFGEASP---EAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALR  122 (170)
Q Consensus        46 ~Vp~fGG~sP---E~kaak~L~~yfTy~AvR~Vl~QL~e~np~~y~wL~~Fl~~~pl~DGd~fL~~Lmre~~~~~~LA~R  122 (170)
                      .||.-.-..+   .+|||++|++||||+|||||++||+||||+.|.||++|++ +|++|||+||++||+|+   ++||+|
T Consensus        14 ~~~~~~~m~~k~iakDtak~L~~YfTYqAvr~VLaQL~EtNP~~y~wL~~F~s-~~iqDGe~fl~~L~~E~---~~LA~R   89 (155)
T 3hyb_A           14 LVPRGSHMNLKQIAKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKVQDGEKYIEELFLEK---PDLALR   89 (155)
T ss_dssp             SSCSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TCCSSHHHHHHHHHHHC---HHHHHH
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHc-CCcccHHHHHHHHHhhC---HHHHHH
Confidence            4554444443   3899999999999999999999999999999999999999 99999999999999997   999999


Q ss_pred             HHHHHHHHhhcccchHHHHHHHHHHHHHHhHHHHHHHHhhhcccc
Q 030868          123 ILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHVE  167 (170)
Q Consensus       123 IMevR~~ya~~~FeWd~lk~la~k~i~~~N~~LMRe~l~et~~~e  167 (170)
                      ||+||+|||+++|||  +++|+.+.|+++|+++||+||++.+++.
T Consensus        90 IM~VRehlae~v~ef--lpeMv~~~IqqaN~el~Rq~LeR~t~~~  132 (155)
T 3hyb_A           90 IMTVREHIAEEIAEF--LPEMVVTGIQQANMEKRRQHLERMTQVS  132 (155)
T ss_dssp             HHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            999999999998665  8999999999999999999999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d2peqa1	108	a.280.1.1 (A:2-109) RuBisCo chaperone RbcX {Synech	2e-38
d2peoa1	115	a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabae	7e-38
d2py8a1	120	a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synech	4e-36

>d2peqa1 a.280.1.1 (A:2-109) RuBisCo chaperone RbcX {Synechococcus sp. pcc 7002 [TaxId: 32049]} Length = 108

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Synechococcus sp. pcc 7002 [TaxId: 32049]

 Score =  124 bits (314), Expect = 2e-38
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 58  KGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHK 117
           + A  L ++ TY AVR+I+ QL   NP     L EF +RHP+ + D +   +M E   +K
Sbjct: 8   ETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLE---NK 64

Query: 118 GLALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYV 160
            L LRIL VR    +   E+  L  + +  + +SN    R  +
Sbjct: 65  ELVLRILTVRENLAEGVLEF--LPEMVLSQIKQSNGNHRRSLL 105

>d2peoa1 a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabaena sp. [TaxId: 1167]} Length = 115

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Anabaena sp. [TaxId: 1167]

 Score =  123 bits (311), Expect = 7e-38
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 6/110 (5%)

Query: 58  KGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHK 117
             AK L ++ TY A+R + AQL   NP     L  F     + DG+K+  +L  E     
Sbjct: 9   DTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKVQDGEKYIEELFLEKPD-- 65

Query: 118 GLALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHVE 167
            LALRI+ VR    +   E+     + +  + ++N    R ++   + V 
Sbjct: 66  -LALRIMTVREHIAEEIAEFLP--EMVVTGIQQANMEKRRQHLERMTQVS 112

>d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis sp., strain PCC 6803 [TaxId: 1143]} Length = 120

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Synechocystis sp., strain PCC 6803 [TaxId: 1143]

 Score =  119 bits (300), Expect = 4e-36
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 5/112 (4%)

Query: 58  KGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHK 117
              K L ++ TY AV  I ++L   NP     L ++L  H + +G+ F  +L+ E+    
Sbjct: 8   ATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKE-- 65

Query: 118 GLALRILEVRSAYCKRDFEWDNLKRLAIKTVDESNTRLMRDYVLETSHVEKE 169
            L LRIL VR    +   ++  L  +   ++ ESN    R  +   +    E
Sbjct: 66  -LVLRILAVREDIAESVLDF--LPGMTRNSLAESNIAHRRHLLERLTRTVAE 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d2peqa1	108	RuBisCo chaperone RbcX {Synechococcus sp. pcc 7002	100.0
d2py8a1	120	RuBisCo chaperone RbcX {Synechocystis sp., strain	100.0
d2peoa1	115	RuBisCo chaperone RbcX {Anabaena sp. [TaxId: 1167]	100.0

>d2peqa1 a.280.1.1 (A:2-109) RuBisCo chaperone RbcX {Synechococcus sp. pcc 7002 [TaxId: 32049]}

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Synechococcus sp. pcc 7002 [TaxId: 32049]

Probab=100.00  E-value=1.6e-45  Score=278.79  Aligned_cols=102  Identities=33%  Similarity=0.512  Sum_probs=99.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHhcCCCCCHHHHHHHHHhcccCChhhHHHHHHHHHHHhhccc
Q 030868           56 EAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDF  135 (170)
Q Consensus        56 E~kaak~L~~yfTy~AvR~Vl~QL~e~np~~y~wL~~Fl~~~pl~DGd~fL~~Lmre~~~~~~LA~RIMevR~~ya~~~F  135 (170)
                      .+|||++|++||||+|||||++||+|||||.|.||++|+++||++|||+||++||+|+   |+||+|||+||+|||+++|
T Consensus         6 ~kd~ak~L~~yfTy~AvrvVl~Ql~e~np~~~~wL~~F~~~~~~~DGd~~l~~L~~e~---~~lA~RIm~vR~~ya~e~~   82 (108)
T d2peqa1           6 AKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLEN---KELVLRILTVRENLAEGVL   82 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCTTSHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcHhHHHHHHHHhcCCCCCHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999999999999999999997   8999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHhh
Q 030868          136 EWDNLKRLAIKTVDESNTRLMRDYVLE  162 (170)
Q Consensus       136 eWd~lk~la~k~i~~~N~~LMRe~l~e  162 (170)
                      ||  +++++.+.|+++|+++||+||++
T Consensus        83 e~--l~em~~~~I~~~N~e~~R~~Ler  107 (108)
T d2peqa1          83 EF--LPEMVLSQIKQSNGNHRRSLLER  107 (108)
T ss_dssp             GG--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHHHHHHHHHHHhc
Confidence            99  89999999999999999999975

>d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis sp., strain PCC 6803 [TaxId: 1143]}

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Synechocystis sp., strain PCC 6803 [TaxId: 1143]

Probab=100.00  E-value=1.4e-45  Score=283.38  Aligned_cols=107  Identities=28%  Similarity=0.434  Sum_probs=103.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHhcCCCCCHHHHHHHHHhcccCChhhHHHHHHHHHHHhhccc
Q 030868           56 EAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDF  135 (170)
Q Consensus        56 E~kaak~L~~yfTy~AvR~Vl~QL~e~np~~y~wL~~Fl~~~pl~DGd~fL~~Lmre~~~~~~LA~RIMevR~~ya~~~F  135 (170)
                      .+|||++|++||||+|||||++||+||||+.|.||++|+++||++|||+||++||+|+   ++||+|||+||+|||+++|
T Consensus         6 ~k~tak~L~~yfTy~Avr~Vl~QL~etnp~~~~wL~~f~~~~~~~DGd~fl~~L~~e~---~~lAlRIm~vRe~lAeev~   82 (120)
T d2py8a1           6 AQATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDEN---KELVLRILAVREDIAESVL   82 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCSSHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcCCCCCHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999999999999999999997   8999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHhhhcccc
Q 030868          136 EWDNLKRLAIKTVDESNTRLMRDYVLETSHVE  167 (170)
Q Consensus       136 eWd~lk~la~k~i~~~N~~LMRe~l~et~~~e  167 (170)
                      ||  +++|+.+.|+++|+++||+||+++++++
T Consensus        83 d~--l~emv~~~I~~~N~e~~Rq~Ler~t~~~  112 (120)
T d2py8a1          83 DF--LPGMTRNSLAESNIAHRRHLLERLTRTV  112 (120)
T ss_dssp             GG--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH--hHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99  8999999999999999999999988864

>d2peoa1 a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabaena sp. [TaxId: 1167]}

class: All alpha proteins
fold: RbcX-like
superfamily: RbcX-like
family: RbcX-like
domain: RuBisCo chaperone RbcX
species: Anabaena sp. [TaxId: 1167]

Probab=100.00  E-value=1.3e-45  Score=281.85  Aligned_cols=109  Identities=28%  Similarity=0.421  Sum_probs=102.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHhcCCCCCHHHHHHHHHhcccCChhhHHHHHHHHHHHhhccc
Q 030868           56 EAKGAKHLHNFFTYIAVRIITAQLQSYNPEAYKELMEFLERHPLNDGDKFCADLMRESSRHKGLALRILEVRSAYCKRDF  135 (170)
Q Consensus        56 E~kaak~L~~yfTy~AvR~Vl~QL~e~np~~y~wL~~Fl~~~pl~DGd~fL~~Lmre~~~~~~LA~RIMevR~~ya~~~F  135 (170)
                      .+|||++|++||||+|||||++||+|||||.|.||++|++ |||+|||+||++||+|+   |+||+|||+||+|||+++|
T Consensus         7 ~kd~ak~L~~yfTy~AvrvVl~Ql~e~np~~~~wL~~f~~-~~~~DGd~~l~~L~~e~---~~lA~RIm~vR~~yae~~~   82 (115)
T d2peoa1           7 AKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKVQDGEKYIEELFLEK---PDLALRIMTVREHIAEEIA   82 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC-C--CCHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHc-CCCcCHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999995 89999999999999997   8999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHhhhccccccC
Q 030868          136 EWDNLKRLAIKTVDESNTRLMRDYVLETSHVEKEK  170 (170)
Q Consensus       136 eWd~lk~la~k~i~~~N~~LMRe~l~et~~~e~~~  170 (170)
                      ||  +++++.+.|+++|+++||+||+++++++..+
T Consensus        83 e~--~~e~~~~~I~~~N~elmR~~Ler~t~~~~~~  115 (115)
T d2peoa1          83 EF--LPEMVVTGIQQANMEKRRQHLERMTQVSLSH  115 (115)
T ss_dssp             TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HH--hHHHHHHHHHHHHHHHHHHHHHHHhcCccCC
Confidence            99  5799999999999999999999999998753