Citrus Sinensis ID: 030894

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MAAMATQQQLQVQKVKNPGLVSCNGSPTKDEKEEDMSRSALALFRAKEEEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKNVELLQ
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccccccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAAMATQQQLQVQkvknpglvscngsptkdekeeDMSRSALALFRAKEEEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKelkplgltcQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKNVELLQ
Flexible Loop (DISEMBL)
maamatqqqlqvqkvknpglvscngsptkdekeedmSRSALALFRAkeeeierkkvevrdkvfaqlgrveeatkrLSEIREeletladplrkdvsvVRKKIdtlnkelkplgltcqrkEREYKEALeafndknkekAQLVSKLMELVSESEKMRMKKLEelsknvellq
Low Complexity Region (SEG)
MAAMATQQQLQVQKVKNPGLVSCNGSPTKDEKEEDMSRSALALFrakeeeierkkvevrdkvFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKNVELLQ
Disordered region (IsUnstruct)
*************************************************************VFAQL***************************VSVVRKKIDTLNKELKPLGLTC******************************************************
Disordered Region (DISOPRED)
***************************************************************************************DPLRKDVSVVRKKIDTLNK*********QRKEREYKEALEAFNDKNKEKAQLVSKLMEL***************SKNVE***
Disordered Region (DISEMBL)
***********VQKVKNPGLVSCN**************SALALFRAKEEEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEEL********
Disordered Region (DISPRO)
*****************************************ALFRAKEEEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKNV****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAMATQQQLQVQKVKNPGLVSCNGSPTKDEKEEDMSRSALALFRAKEEEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTxxxxxxxxxxxxxxxxxxxxxKAQLVSKLMELVSESEKMRMKKLEELSKNVELLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
255576379	173	conserved hypothetical protein [Ricinus	0.964	0.942	0.786	3e-67
351723169	176	uncharacterized protein LOC100499699 [Gl	0.934	0.897	0.778	3e-64
225436319	172	PREDICTED: uncharacterized protein LOC10	0.964	0.947	0.742	7e-64
359807315	175	uncharacterized protein LOC100796368 [Gl	0.934	0.902	0.772	3e-63
449443426	176	PREDICTED: uncharacterized protein LOC10	0.982	0.943	0.698	1e-60
388494686	177	unknown [Lotus japonicus]	0.917	0.875	0.729	9e-59
224131620	176	predicted protein [Populus trichocarpa]	0.958	0.920	0.731	2e-55
15226234	174	uncharacterized protein [Arabidopsis tha	0.970	0.942	0.625	4e-54
297826177	174	hypothetical protein ARALYDRAFT_481739 [	0.970	0.942	0.614	3e-53
255637447	164	unknown [Glycine max]	0.905	0.932	0.690	7e-53

>gi|255576379|ref|XP_002529082.1| conserved hypothetical protein [Ricinus communis] gi|223531494|gb|EEF33326.1| conserved hypothetical protein [Ricinus communis]

 Score =  259 bits (661), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 129/164 (78%), Positives = 154/164 (93%), Gaps = 1/164 (0%)

Query: 7   QQQLQVQKVKNPGL-VSCNGSPTKDEKEEDMSRSALALFRAKEEEIERKKVEVRDKVFAQ 65
           QQQLQ+Q+VKN G  V+ NGSP  D+K+E+MSRSALA+FRAKEEEIERKK+EV+D+V AQ
Sbjct: 10  QQQLQMQRVKNSGAAVTTNGSPATDDKDEEMSRSALAMFRAKEEEIERKKMEVKDRVQAQ 69

Query: 66  LGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEA 125
           LGR EEATKRL+EIREELETL+DP+RK+VS+VRKKIDT+N+ELKPLGLTCQRKEREY+EA
Sbjct: 70  LGRAEEATKRLAEIREELETLSDPMRKEVSMVRKKIDTVNRELKPLGLTCQRKEREYREA 129

Query: 126 LEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKNVELLQ 169
           LEAFN+KNKEK+QLVSKLMELV ESE++R+KKLEELSKN+E L+
Sbjct: 130 LEAFNEKNKEKSQLVSKLMELVGESERLRLKKLEELSKNIETLR 173

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723169|ref|NP_001238549.1| uncharacterized protein LOC100499699 [Glycine max] gi|255625895|gb|ACU13292.1| unknown [Glycine max]

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 123/158 (77%), Positives = 146/158 (92%)

Query: 12  VQKVKNPGLVSCNGSPTKDEKEEDMSRSALALFRAKEEEIERKKVEVRDKVFAQLGRVEE 71
           VQ+V+N G+++ N SP +D+KEE+MSRSALA+FRAKEEEIER+KVEVRDKV A LGRVEE
Sbjct: 19  VQRVRNSGMINSNQSPMRDDKEEEMSRSALAMFRAKEEEIERRKVEVRDKVHAYLGRVEE 78

Query: 72  ATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFND 131
            TKRL+EIREELE L DPLRK+V++VRKKID++NKELKPLG TCQR+EREYKEAL+AFN+
Sbjct: 79  ETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKELKPLGQTCQRREREYKEALDAFNE 138

Query: 132 KNKEKAQLVSKLMELVSESEKMRMKKLEELSKNVELLQ 169
           KNKEKAQLV+KLMELV+ESEK+RMKKLEELSKNV+ L 
Sbjct: 139 KNKEKAQLVTKLMELVTESEKLRMKKLEELSKNVDTLH 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436319|ref|XP_002267642.1| PREDICTED: uncharacterized protein LOC100243168 [Vitis vinifera] gi|297734837|emb|CBI17071.3| unnamed protein product [Vitis vinifera]

 Score =  248 bits (632), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 121/163 (74%), Positives = 150/163 (92%)

Query: 7   QQQLQVQKVKNPGLVSCNGSPTKDEKEEDMSRSALALFRAKEEEIERKKVEVRDKVFAQL 66
           QQQ Q+QKVKN G++S NGSP  D+K+E+MSRSAL+ FRAKEEEIERKK+EVR++V AQL
Sbjct: 10  QQQSQMQKVKNSGVISYNGSPLTDDKDEEMSRSALSAFRAKEEEIERKKMEVRERVQAQL 69

Query: 67  GRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEAL 126
           GRVEE TKRL+EIREELE L+DP+RK+V+++RK+ID +N+EL+PLG  CQ+KE+EYKEAL
Sbjct: 70  GRVEEETKRLAEIREELEALSDPMRKEVAIIRKRIDAVNRELRPLGQGCQKKEKEYKEAL 129

Query: 127 EAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKNVELLQ 169
           EAFN+KNKEKAQLV+KLMELVSESE++RMKKLEELSKN+E +Q
Sbjct: 130 EAFNEKNKEKAQLVTKLMELVSESERLRMKKLEELSKNIESIQ 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807315|ref|NP_001241375.1| uncharacterized protein LOC100796368 [Glycine max] gi|255645526|gb|ACU23258.1| unknown [Glycine max]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 122/158 (77%), Positives = 145/158 (91%)

Query: 12  VQKVKNPGLVSCNGSPTKDEKEEDMSRSALALFRAKEEEIERKKVEVRDKVFAQLGRVEE 71
           VQ+V+N G+++ N SP +D+KEE+MSRSALA+FRAKEEEIER+K+EVRDKV A LGRVEE
Sbjct: 18  VQRVRNSGMINSNQSPMRDDKEEEMSRSALAMFRAKEEEIERRKMEVRDKVHAYLGRVEE 77

Query: 72  ATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFND 131
            TKRL+EIREELE L DPLRK+V++VRKKID++NKELKPLG TCQRKEREYKEALE FN+
Sbjct: 78  ETKRLAEIREELEGLTDPLRKEVAIVRKKIDSVNKELKPLGQTCQRKEREYKEALEVFNE 137

Query: 132 KNKEKAQLVSKLMELVSESEKMRMKKLEELSKNVELLQ 169
           KNKEKAQLV+KLMELV+ESEK+RMKKLEELSKN++ L 
Sbjct: 138 KNKEKAQLVTKLMELVTESEKLRMKKLEELSKNLDTLH 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443426|ref|XP_004139478.1| PREDICTED: uncharacterized protein LOC101203874 [Cucumis sativus]

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 123/176 (69%), Positives = 153/176 (86%), Gaps = 10/176 (5%)

Query: 4   MATQQQL----QVQKVKNPGLVSCN------GSPTKDEKEEDMSRSALALFRAKEEEIER 53
           M TQ+Q     Q+Q+VKN G++S N      GSP K+++EE++SRSALALFRAKEEEIER
Sbjct: 1   MTTQKQSWEAQQMQRVKNSGMISSNVNNGIIGSPLKEDQEEEISRSALALFRAKEEEIER 60

Query: 54  KKVEVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGL 113
           KK+E+R+KV A+LGR EEATKRL+EIREELE + DP+RK+VS +RKKID +NKELKPLGL
Sbjct: 61  KKMEMREKVEARLGRAEEATKRLAEIREELEGMTDPMRKEVSFIRKKIDLVNKELKPLGL 120

Query: 114 TCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKNVELLQ 169
           TCQ+KEREYKE L+ FN+KNKEK+QLVSKLMELV+ESEK+RMKKLEELSKN+++L+
Sbjct: 121 TCQKKEREYKEVLDLFNEKNKEKSQLVSKLMELVNESEKLRMKKLEELSKNIDILR 176

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494686|gb|AFK35409.1| unknown [Lotus japonicus]

 Score =  231 bits (588), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 113/155 (72%), Positives = 136/155 (87%)

Query: 15  VKNPGLVSCNGSPTKDEKEEDMSRSALALFRAKEEEIERKKVEVRDKVFAQLGRVEEATK 74
           VKN G++S + SP  D+KEE+MSRSALA+FRAKEEEIER+K+EVRDKV A LGRVE   K
Sbjct: 23  VKNSGMISSDQSPRIDDKEEEMSRSALAMFRAKEEEIERRKMEVRDKVHAHLGRVETEAK 82

Query: 75  RLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNK 134
           RL+EIREELE   DP+RK+V +VRKKID +NKELKPLG TCQ+KEREY EALEAFNDKN+
Sbjct: 83  RLAEIREELEGFTDPMRKEVGIVRKKIDMVNKELKPLGQTCQKKEREYHEALEAFNDKNR 142

Query: 135 EKAQLVSKLMELVSESEKMRMKKLEELSKNVELLQ 169
           EKAQLV+KL+ELV+ESE++RMKKL+ELSKN++ L 
Sbjct: 143 EKAQLVTKLVELVTESERLRMKKLDELSKNIDTLH 177

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131620|ref|XP_002328067.1| predicted protein [Populus trichocarpa] gi|222837582|gb|EEE75947.1| predicted protein [Populus trichocarpa]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 120/164 (73%), Positives = 150/164 (91%), Gaps = 2/164 (1%)

Query: 7   QQQLQVQKVKNPGLVS-CNGSP-TKDEKEEDMSRSALALFRAKEEEIERKKVEVRDKVFA 64
           Q Q+Q++ +KN G++S  + SP ++D+K+++MSRSA+A+FRAKEEEIE+KK+EVRDKV A
Sbjct: 12  QSQMQIRMMKNSGIISNISESPLSRDDKDDEMSRSAVAMFRAKEEEIEKKKMEVRDKVHA 71

Query: 65  QLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKE 124
            LGR EEATKRL+EIREELE L DP+RK+VS+VRK+IDT+N+ELKPLGL+CQ+KEREYKE
Sbjct: 72  HLGRAEEATKRLAEIREELEALTDPMRKEVSMVRKRIDTVNRELKPLGLSCQKKEREYKE 131

Query: 125 ALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKNVELL 168
           ALEAFN+KNKEKAQLVSKL+EL SESEK+RMKKLEELSKN+E L
Sbjct: 132 ALEAFNEKNKEKAQLVSKLVELASESEKLRMKKLEELSKNIETL 175

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226234|ref|NP_180342.1| uncharacterized protein [Arabidopsis thaliana] gi|3860258|gb|AAC73026.1| unknown protein [Arabidopsis thaliana] gi|46518375|gb|AAS99669.1| At2g27740 [Arabidopsis thaliana] gi|48310367|gb|AAT41807.1| At2g27740 [Arabidopsis thaliana] gi|110737674|dbj|BAF00776.1| hypothetical protein [Arabidopsis thaliana] gi|330252943|gb|AEC08037.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  216 bits (549), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 107/171 (62%), Positives = 144/171 (84%), Gaps = 7/171 (4%)

Query: 4   MATQQQLQ-------VQKVKNPGLVSCNGSPTKDEKEEDMSRSALALFRAKEEEIERKKV 56
           MAT +Q+        +Q++K+ G +S NGSP  DEKEE++S+SA ALF+AKE+EIER+K+
Sbjct: 1   MATTRQILEQPQSPFIQRIKSSGNISMNGSPMIDEKEEELSQSAFALFKAKEDEIERRKM 60

Query: 57  EVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQ 116
           EV+D+V  +LG  EEAT+RL+EIREELE L DP+RK++S +RK++D +N+ELKPLG +CQ
Sbjct: 61  EVKDRVQKKLGLAEEATRRLAEIREELEALTDPMRKEISAIRKRVDAINRELKPLGQSCQ 120

Query: 117 RKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKNVEL 167
           RKERE+KEALEA+N+KNKEKA  VSKL+ELV+ESEK+RM KLEELSK++E+
Sbjct: 121 RKEREFKEALEAYNEKNKEKAIFVSKLVELVTESEKLRMTKLEELSKSIEI 171

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826177|ref|XP_002880971.1| hypothetical protein ARALYDRAFT_481739 [Arabidopsis lyrata subsp. lyrata] gi|297326810|gb|EFH57230.1| hypothetical protein ARALYDRAFT_481739 [Arabidopsis lyrata subsp. lyrata]

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/171 (61%), Positives = 143/171 (83%), Gaps = 7/171 (4%)

Query: 4   MATQQQLQ-------VQKVKNPGLVSCNGSPTKDEKEEDMSRSALALFRAKEEEIERKKV 56
           MAT +Q+        +Q++K+ G +S NGS   D+KEE++S+SA ALF+AKE+EIER+K+
Sbjct: 1   MATTRQILEQPQSPFIQRIKSSGNISINGSSMIDDKEEELSQSAFALFKAKEDEIERRKM 60

Query: 57  EVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQ 116
           EV+D+V  +LG  EEAT+RL+EIREELE L DP+RK++S +RK++D +N+ELKPLG +CQ
Sbjct: 61  EVKDRVQTKLGLAEEATRRLAEIREELEALTDPMRKEISAIRKRVDAINRELKPLGQSCQ 120

Query: 117 RKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKNVEL 167
           RKERE+KEALEA+N+KNKEKA  VSKL+ELV+ESEK+RM KLEELSK++E+
Sbjct: 121 RKEREFKEALEAYNEKNKEKAIFVSKLVELVTESEKLRMTKLEELSKSIEI 171

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637447|gb|ACU19051.1| unknown [Glycine max]

 Score =  211 bits (538), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 107/155 (69%), Positives = 138/155 (89%), Gaps = 2/155 (1%)

Query: 15  VKNPGLVSCNGSPTKDEKEEDMSRSALALFRAKEEEIERKKVEVRDKVFAQLGRVEEATK 74
           V+N G +S +   +K++  E++SRSAL+ FRAKEEEIERKK+EVR+KV  QLGRVEE TK
Sbjct: 12  VQNSGSLSFSSHLSKED--EEISRSALSTFRAKEEEIERKKMEVREKVQLQLGRVEEETK 69

Query: 75  RLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNK 134
           RL+ IREELE LADP+RK+V++VRK+ID++NKELKPLG TCQ+KE+EYK+ALEAFN+KN+
Sbjct: 70  RLATIREELEALADPMRKEVALVRKRIDSVNKELKPLGHTCQKKEKEYKDALEAFNEKNR 129

Query: 135 EKAQLVSKLMELVSESEKMRMKKLEELSKNVELLQ 169
           EK QL++KLMELVSESE++RMKKLEELSKN++ +Q
Sbjct: 130 EKVQLITKLMELVSESERLRMKKLEELSKNIDSIQ 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
TAIR|locus:2041985	174	AT2G27740 "AT2G27740" [Arabido	0.923	0.896	0.583	1.5e-44
TAIR|locus:2100083	178	AT3G09980 "AT3G09980" [Arabido	0.857	0.814	0.620	7.5e-41
TAIR|locus:2044883	195	AT2G36410 [Arabidopsis thalian	0.928	0.805	0.561	4.8e-39
TAIR|locus:2085231	180	AT3G52920 [Arabidopsis thalian	0.952	0.894	0.518	7e-38
TAIR|locus:2144618	173	AT5G03660 "AT5G03660" [Arabido	0.928	0.907	0.522	5.7e-36
TAIR|locus:2085206	164	AT3G52900 "AT3G52900" [Arabido	0.881	0.908	0.48	7.7e-32
TAIR|locus:1009023152	155	AT2G36355 "AT2G36355" [Arabido	0.621	0.677	0.571	2.2e-27
RGD|1564990	368	Gorab "golgin, RAB6-interactin	0.591	0.271	0.29	1.2e-07
UNIPROTKB|A5PKK7	370	GORAB "RAB6-interacting golgin	0.591	0.270	0.29	1.5e-07
UNIPROTKB|F1MBY2	395	GORAB "RAB6-interacting golgin	0.591	0.253	0.29	1.7e-07

TAIR|locus:2041985 AT2G27740 "AT2G27740" [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 91/156 (58%), Positives = 120/156 (76%)

Query:    12 VQKVKNPGLVSCNGSPTKDEKEEDMSRSALALFXXXXXXXXXXXXXXXXXXFAQLGRVEE 71
             +Q++K+ G +S NGSP  DEKEE++S+SA ALF                    +LG  EE
Sbjct:    16 IQRIKSSGNISMNGSPMIDEKEEELSQSAFALFKAKEDEIERRKMEVKDRVQKKLGLAEE 75

Query:    72 ATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFND 131
             AT+RL+EIREELE L DP+RK++S +RK++D +N+ELKPLG +CQRKERE+KEALEA+N+
Sbjct:    76 ATRRLAEIREELEALTDPMRKEISAIRKRVDAINRELKPLGQSCQRKEREFKEALEAYNE 135

Query:   132 KNKEKAQLVSKLMELVSESEKMRMKKLEELSKNVEL 167
             KNKEKA  VSKL+ELV+ESEK+RM KLEELSK++E+
Sbjct:   136 KNKEKAIFVSKLVELVTESEKLRMTKLEELSKSIEI 171

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2100083 AT3G09980 "AT3G09980" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 90/145 (62%), Positives = 112/145 (77%)

Query:    22 SCNGSPTKDEKEEDMSRSALALFXXXXXXXXXXXXXXXXXXFAQLGRVEEATKRLSEIRE 81
             S + S    +++E+MSR+AL+ F                   AQLGRVEE TKRL+ IRE
Sbjct:    31 SMSFSSQMSKEDEEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLGRVEEETKRLALIRE 90

Query:    82 ELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVS 141
             ELE LADP+RK+V++VRKKID++NKELKPLG T Q+KEREYKEALEAFN+KN+EK QL++
Sbjct:    91 ELEGLADPMRKEVAMVRKKIDSVNKELKPLGHTVQKKEREYKEALEAFNEKNREKVQLIT 150

Query:   142 KLMELVSESEKMRMKKLEELSKNVE 166
             +LMELV ESEKMRMKKLEELSKN++
Sbjct:   151 RLMELVGESEKMRMKKLEELSKNID 175

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2044883 AT2G36410 [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 91/162 (56%), Positives = 118/162 (72%)

Query:     8 QQLQVQKVKNPGLVSCNGSPTKDEKEEDMSRSALALFXXXXXXXXXXXXXXXXXXFAQLG 67
             QQ   + V + G +S +   ++++  E+M+RSAL+ F                   AQLG
Sbjct:    34 QQQSNEMVLHTGSLSFSSHMSRED--EEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLG 91

Query:    68 RVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALE 127
             RVE+ TKRLS IREELE++ADP+RK+VSVVRKKID++NKELKPLG T Q+KEREYKEAL+
Sbjct:    92 RVEQETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKEREYKEALD 151

Query:   128 AFNDKNKEKAQLVSKLME---LVSESEKMRMKKLEELSKNVE 166
              FN+KN+EK QL++KLME   LV ESEK+RM KLEELSK++E
Sbjct:   152 TFNEKNREKVQLITKLMEMEQLVGESEKLRMIKLEELSKSIE 193

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

TAIR|locus:2085231 AT3G52920 [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 86/166 (51%), Positives = 118/166 (71%)

Query:     4 MATQQQLQVQKVKNPGLVSCNGSPTKDEKEEDMSRSALALFXXXXXXXXXXXXXXXXXXF 63
             M T  +   Q  +   ++S + S    +++E+M+RSAL+ F                   
Sbjct:     1 MTTTNEATTQPPQQ--MMSLSFSSQMSKEDEEMARSALSAFRAKEDEIEKRKMEVRERVK 58

Query:    64 AQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYK 123
             AQLGRVEE T+RL+ IREELET+ADP+RK+V+ VRKKID++NKELKPLG T Q+KEREYK
Sbjct:    59 AQLGRVEEETRRLASIREELETMADPMRKEVNWVRKKIDSVNKELKPLGSTVQKKEREYK 118

Query:   124 EALEAFNDKNKEKAQLVSKLME---LVSESEKMRMKKLEELSKNVE 166
             EAL+ FN+KN+EK QL++KLME   LV ESEK+R+KKL+ELS++++
Sbjct:   119 EALDTFNEKNREKVQLITKLMEMGQLVGESEKLRLKKLDELSRSID 164

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2144618 AT5G03660 "AT5G03660" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 82/157 (52%), Positives = 111/157 (70%)

Query:    11 QVQKVKNPGLVSCNGSPTKDEKEEDMSRSALALFXXXXXXXXXXXXXXXXXXFAQLGRVE 70
             Q +++K+    S + S    ++++++S  AL+ F                   AQLGRVE
Sbjct:    14 QGRRLKDQLSESMSFSSQMKKEDDELSMKALSAFKAKEEEIEKKKMEIRERVQAQLGRVE 73

Query:    71 EATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFN 130
             + +KRL+ IREELE  ADP+RK+V++VRKKID+L+KELKPLG T Q+KE EYK+ALEAFN
Sbjct:    74 DESKRLAMIREELEGFADPMRKEVTMVRKKIDSLDKELKPLGNTVQKKETEYKDALEAFN 133

Query:   131 DKNKEKAQLVSKLMELVSESEKMRMKKLEELSKNVEL 167
             +KNKEK +L++KL EL  ESEK R KKLEELSKN++L
Sbjct:   134 EKNKEKVELITKLQELEGESEKFRFKKLEELSKNIDL 170

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2085206 AT3G52900 "AT3G52900" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 72/150 (48%), Positives = 102/150 (68%)

Query:    21 VSCNGS-PTKDEKEEDMSRSALALFXXXXXXXXXXXXXXXXXXFAQLGRVEEATKRLSEI 79
             V+ NG  P +D +EE++ + A+  F                    +LG  EEAT+ L++ 
Sbjct:    15 VNTNGKLPMEDNEEEEIWKVAVTRFQAREEEIERKKMTVKEKVQQRLGFAEEATRCLTQT 74

Query:    80 REELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQL 139
              EELE + DP+RK+V +VRKKID  N+++K L  +CQ+KE+EYK+ LEAFN+KNKEKA L
Sbjct:    75 LEELEIMGDPMRKEVGMVRKKIDMANRDIKSLAQSCQKKEKEYKDTLEAFNEKNKEKAHL 134

Query:   140 VSKLMELVSESEKMRMKKLEELSKNVELLQ 169
             VS LMEL++ESE++R+KKLEE++K V  LQ
Sbjct:   135 VSMLMELLAESERLRIKKLEEINKTVGTLQ 164

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:1009023152 AT2G36355 "AT2G36355" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 60/105 (57%), Positives = 84/105 (80%)

Query:    65 QLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKE 124
             +LG  EEAT+ L++  E LE + DP+RK+V +VRKKI+  N+E+K L  +CQ+KEREYKE
Sbjct:    51 RLGFAEEATRSLTQTLEGLEIMGDPMRKEVGMVRKKIEMANREIKSLSQSCQKKEREYKE 110

Query:   125 ALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKNVELLQ 169
               EAF++KNKEKA LVS LMEL++ESE++R+KKLEE++K +  L+
Sbjct:   111 IHEAFDEKNKEKAHLVSILMELLAESERVRVKKLEEINKTIGSLR 155

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

RGD|1564990 Gorab "golgin, RAB6-interacting" [Rattus norvegicus (taxid:10116)]

 Score = 128 (50.1 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 29/100 (29%), Positives = 51/100 (51%)

Query:    68 RVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALE 127
             R +  T +L  I++EL+ L D +  D+ ++R +ID  + E         R E EY  A  
Sbjct:   177 RTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASLEYSYARKRFDRAEAEYVTAKL 236

Query:   128 AFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKNVEL 167
                 K + K QL   L  ++ ++E  + +KLEEL + +++
Sbjct:   237 DLQRKTETKEQLTEHLCTIIQQNELRKAQKLEELMRQLDV 276

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

UNIPROTKB|A5PKK7 GORAB "RAB6-interacting golgin" [Bos taurus (taxid:9913)]

 Score = 127 (49.8 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 29/100 (29%), Positives = 51/100 (51%)

Query:    68 RVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALE 127
             R +  T +L  I++EL+ L D +  D+ ++R +ID  + +         R E EY  A  
Sbjct:   174 RTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASLDYSYARKRFDRAEAEYVTAKL 233

Query:   128 AFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKNVEL 167
                 K + K QL   L  ++ ++E  + KKLEEL + +++
Sbjct:   234 ELQRKTELKEQLTEHLCTIIQQNELRKAKKLEELMQQLDV 273

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|F1MBY2 GORAB "RAB6-interacting golgin" [Bos taurus (taxid:9913)]

 Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 29/100 (29%), Positives = 51/100 (51%)

Query:    68 RVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALE 127
             R +  T +L  I++EL+ L D +  D+ ++R +ID  + +         R E EY  A  
Sbjct:   199 RTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASLDYSYARKRFDRAEAEYVTAKL 258

Query:   128 AFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKNVEL 167
                 K + K QL   L  ++ ++E  + KKLEEL + +++
Sbjct:   259 ELQRKTELKEQLTEHLCTIIQQNELRKAKKLEELMQQLDV 298

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022071001 SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (172 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	169
pfam04949	160	pfam04949, Transcrip_act, Transcriptional activato	6e-61

>gnl|CDD|191136 pfam04949, Transcrip_act, Transcriptional activator

 Score =  185 bits (472), Expect = 6e-61
 Identities = 115/160 (71%), Positives = 146/160 (91%)

Query: 9   QLQVQKVKNPGLVSCNGSPTKDEKEEDMSRSALALFRAKEEEIERKKVEVRDKVFAQLGR 68
           Q+Q  +VK+ G +S  GSP  DEK+E++SRSAL+LF+AKEEEIER+K+EVR++V AQLGR
Sbjct: 1   QIQRLRVKHSGSISFGGSPMMDEKDEELSRSALSLFKAKEEEIERRKMEVRERVQAQLGR 60

Query: 69  VEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEA 128
           VEE TKRL+EIREELE +ADP+RK+VS++RK+ID++N+ELKPLG TCQ+KE+EYKEALEA
Sbjct: 61  VEEETKRLAEIREELEGMADPMRKEVSMIRKRIDSVNRELKPLGQTCQKKEKEYKEALEA 120

Query: 129 FNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKNVELL 168
           +N+KNKEKAQLV+KLMELV ESEK+RMKKLEELSK++E L
Sbjct: 121 YNEKNKEKAQLVTKLMELVGESEKLRMKKLEELSKSIESL 160

This family of proteins may act as a transcriptional activator. It plays a role in stress response in plants. Length = 160

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	169
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	100.0
TIGR01837	118	PHA_granule_1 poly(hydroxyalkanoate) granule-assoc	94.85
PF05597	132	Phasin: Poly(hydroxyalcanoate) granule associated	94.3
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	92.89
PF07200	150	Mod_r: Modifier of rudimentary (Mod(r)) protein; I	86.53
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	86.42
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	86.39
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	82.68
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	81.63
PF10186	302	Atg14: UV radiation resistance protein and autopha	80.27

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=100.00  E-value=8.6e-78  Score=481.83  Aligned_cols=157  Identities=75%  Similarity=1.054  Sum_probs=153.6

Q ss_pred             HHhhhcCCCccccCCCCCCchhhhhhhHHHHHhhHhhHHHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHhhccchh
Q 030894           11 QVQKVKNPGLVSCNGSPTKDEKEEDMSRSALALFRAKEEEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETLADPL   90 (169)
Q Consensus        11 ~v~~~~~sg~~~~~~~~~~~~k~ee~srsAls~F~aKEEEIErkKmeVrekV~aqLGRvEeetkrLa~IreELE~laDP~   90 (169)
                      ++++++|||+++++|++..++++++|||||+|+|+|||++||||||+||+|||+|||||||+|||||+||+|||+|+|||
T Consensus         3 ~~~~~~~~~~~~~~g~~~~~~~~e~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~   82 (159)
T PF04949_consen    3 QVLRVKNSGSISFNGSSMMDDEDEEMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPM   82 (159)
T ss_pred             hhhhcccCCCCCCCCCcccchhHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccch
Confidence            45679999999999998888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhhhhcccchhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhh
Q 030894           91 RKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSKNVEL  167 (169)
Q Consensus        91 RKEV~~vRKkID~vNreLKpLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErlRmkKLEELsK~ies  167 (169)
                      ||||++||||||+|||+|||||++|||||+|||+||+||||||+||++||++||+||+||||+|||||||||++|++
T Consensus        83 RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~rmKKLEELsk~ies  159 (159)
T PF04949_consen   83 RKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLRMKKLEELSKEIES  159 (159)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999986

This entry represents proteins annotated as RAB6-interacting golgins.

>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein

Probab=94.85  E-value=0.095  Score=39.68  Aligned_cols=62  Identities=24%  Similarity=0.422  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHhhhhhcccchh
Q 030894           49 EEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLG  112 (169)
Q Consensus        49 EEIErkKmeVrekV~aqLGRvEeetkrLa~IreELE~laDP~RKEV~~vRKkID~vNreLKpLg  112 (169)
                      +++...--+|+++.+.+.+.+|.-..+  .+..=|..|+-|+|.||..++.|||.+...|..|.
T Consensus        55 e~~~~~~~~~~~~~~~~~~~le~~~~~--~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~  116 (118)
T TIGR01837        55 EEVKTALEQTRDQVQRNWDKLEKAFDE--RVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR  116 (118)
T ss_pred             HHHhhhHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            555555566777777777777776553  56778999999999999999999999999887764

This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.

>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material

Probab=94.30  E-value=0.19  Score=39.44  Aligned_cols=62  Identities=24%  Similarity=0.477  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHhchhHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHhhhhhcccchh
Q 030894           49 EEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLG  112 (169)
Q Consensus        49 EEIErkKmeVrekV~aqLGRvEeetkrLa~IreELE~laDP~RKEV~~vRKkID~vNreLKpLg  112 (169)
                      +.+...--.|++++..+++++|.--..  .+..-|..|+=|+|+||..++.|||.++++|.-|.
T Consensus        68 ~~~~~~~~~~~~~~~~~~dklE~~fd~--rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~  129 (132)
T PF05597_consen   68 DQVKSRVDDVKERATGQWDKLEQAFDE--RVARALNRLGVPSRKDVEALSARIDQLTAQVERLA  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            444455567778888888877764321  23445889999999999999999999999886553

PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=92.89  E-value=4.6  Score=37.71  Aligned_cols=71  Identities=18%  Similarity=0.314  Sum_probs=58.3

Q ss_pred             HHHHHHHHHhhhhhcccchhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 030894           93 DVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEELSK  163 (169)
Q Consensus        93 EV~~vRKkID~vNreLKpLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErlRmkKLEELsK  163 (169)
                      ..+.++++|+.++++|+-+|....+-..+|.++.+-|+.-.+...+|....-.|-.-=++++-++.+.+..
T Consensus       952 ~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~ 1022 (1164)
T TIGR02169       952 SLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFME 1022 (1164)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999988888999999999999999999999887777766666666665444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins

Probab=86.53  E-value=9.7  Score=28.58  Aligned_cols=62  Identities=26%  Similarity=0.325  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHHhhhhhcccchhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhHHHHH
Q 030894           91 RKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSESEKM  153 (169)
Q Consensus        91 RKEV~~vRKkID~vNreLKpLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~LmELv~ESErl  153 (169)
                      ..++...|-.|-..-.+++.|...|+.|++.|..+...||.-. -++.|-.-.-+.=.+||.+
T Consensus        54 ~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~-l~~~L~~~~~e~eeeSe~l  115 (150)
T PF07200_consen   54 EPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDA-LLARLQAAASEAEEESEEL  115 (150)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHHHHHHHH
Confidence            4677788888888888999999999999999999999999864 3333333333444444443

The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=86.42  E-value=28  Score=32.36  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=18.1

Q ss_pred             hHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHhhhh
Q 030894          133 NKEKAQLVSKLMELVSE-SEKMRMKKLEELSKNVE  166 (169)
Q Consensus       133 nkEKa~LV~~LmELv~E-SErlRmkKLEELsK~ie  166 (169)
                      .........++.+++.+ -+.++-.+...|++.+.
T Consensus       478 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~  512 (650)
T TIGR03185       478 LERAITIADKAKKTLKEFREKLLERKLQQLEEEIT  512 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555554443 35566666666766654

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=86.39  E-value=2.2  Score=31.68  Aligned_cols=53  Identities=30%  Similarity=0.465  Sum_probs=39.0

Q ss_pred             HHHHHHhchhHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHhhhhhcccchhhh
Q 030894           60 DKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLT  114 (169)
Q Consensus        60 ekV~aqLGRvEeetkrLa~IreELE~laDP~RKEV~~vRKkID~vNreLKpLg~t  114 (169)
                      +.+..--.++..-.+||+.+-.+++.|  |++.+|..++..|..++.+++-++.+
T Consensus        35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~L--Pt~~dv~~L~l~l~el~G~~~~l~~~   87 (106)
T PF10805_consen   35 EDIEKLEERLDEHDRRLQALETKLEHL--PTRDDVHDLQLELAELRGELKELSAR   87 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            333333345556678999999999988  88999988888888888777655543

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=82.68  E-value=43  Score=33.22  Aligned_cols=95  Identities=33%  Similarity=0.515  Sum_probs=61.9

Q ss_pred             HHHHHHhchhHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHhhhhhcccchhhhHHhhHHHHH----------------
Q 030894           60 DKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYK----------------  123 (169)
Q Consensus        60 ekV~aqLGRvEeetkrLa~IreELE~laDP~RKEV~~vRKkID~vNreLKpLg~tcqKKEkEYK----------------  123 (169)
                      +|-++++..+++|--|+.-=-.+|-.+-|-.-.+|..+++|||.+...|+       .|++...                
T Consensus       360 ~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~-------ekd~ql~~~k~Rl~~~~d~~~~~  432 (775)
T PF10174_consen  360 EKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR-------EKDRQLDEEKERLSSQADSSNED  432 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccccccchH
Confidence            44555666666665555443333444445555689999999998887765       3444433                


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 030894          124 EALEAFNDKNKEKAQLVSKLMELVSESEKMRMKKLEEL  161 (169)
Q Consensus       124 eaLEAfNEKnkEKa~LV~~LmELv~ESErlRmkKLEEL  161 (169)
                      .+++.+.+-+.+|-.++..|-++-..+++-+.--|+-+
T Consensus       433 ~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~  470 (775)
T PF10174_consen  433 EALETLEEALREKERLQERLEEQRERAEKERQEELETY  470 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555668889999999998888777776665544433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=81.63  E-value=33  Score=29.45  Aligned_cols=87  Identities=17%  Similarity=0.292  Sum_probs=62.0

Q ss_pred             HHHHHHHHHhchhHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHhhhhhcccchhhhHHhhHHHHHHHHHHhhhhhHHH
Q 030894           57 EVRDKVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEK  136 (169)
Q Consensus        57 eVrekV~aqLGRvEeetkrLa~IreELE~laDP~RKEV~~vRKkID~vNreLKpLg~tcqKKEkEYKeaLEAfNEKnkEK  136 (169)
                      ++..++.+....++.+..+|...-.|   +++-.+.++..+|..|..++-+|.-..+.-...+.+...--+..++.+.+|
T Consensus       177 ~~~~~l~~~~~~L~~e~~~Lk~~~~e---~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k  253 (325)
T PF08317_consen  177 ELLPKLRERKAELEEELENLKQLVEE---IESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK  253 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh---hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555566666666666666665555   555566888888888888888888777777777777777777777777777


Q ss_pred             HHHHHHHHHH
Q 030894          137 AQLVSKLMEL  146 (169)
Q Consensus       137 a~LV~~LmEL  146 (169)
                      ..+...+-++
T Consensus       254 ~~l~~eI~e~  263 (325)
T PF08317_consen  254 QELLAEIAEA  263 (325)
T ss_pred             HHHHHHHHHH
Confidence            7776666554

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=80.27  E-value=28  Score=27.68  Aligned_cols=51  Identities=25%  Similarity=0.418  Sum_probs=33.2

Q ss_pred             HHHHHhchhHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHhhhhhcccchhhhH
Q 030894           61 KVFAQLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTC  115 (169)
Q Consensus        61 kV~aqLGRvEeetkrLa~IreELE~laDP~RKEV~~vRKkID~vNreLKpLg~tc  115 (169)
                      .++..-..+++...|++.|+..++.    .++++..-|++|+.....|......-
T Consensus        57 ~~~~~~~~~~~~~~r~~~l~~~i~~----~~~~i~~~r~~l~~~~~~l~~~~~~l  107 (302)
T PF10186_consen   57 EIQQLKREIEELRERLERLRERIER----LRKRIEQKRERLEELRESLEQRRSRL  107 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445566777778877777765    46677777777777766666555443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	169
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-04
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	3e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	8e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.5 bits (113), Expect = 5e-07
 Identities = 29/139 (20%), Positives = 58/139 (41%), Gaps = 5/139 (3%)

Query: 31   EKEEDMSRSALALFRAKEEEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETLADPL 90
            E+      + LA    K + + + K +      + +  +E   K+  + R+ELE +   L
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHE----SMISELEVRLKKEEKSRQELEKIKRKL 1065

Query: 91   RKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSES 150
              + S + ++I  L  ++  L     +KE E + AL    D+  +K   + K+ EL S  
Sbjct: 1066 EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHI 1125

Query: 151  EKMRMKKLEELSKNVELLQ 169
              ++ + LE         +
Sbjct: 1126 SDLQ-EDLESEKAARNKAE 1143

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 6/146 (4%)

Query: 29   KDEKEEDMSRSALALFRAKEE--EIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETL 86
            K E EE +      +   +E   +++ +K +++ ++     ++EE      +++ E  T 
Sbjct: 922  KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA 981

Query: 87   ADPLRK---DVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKL 143
               ++K   D+ ++  + + L KE K L            E  E   +  K K +  S +
Sbjct: 982  DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMI 1041

Query: 144  MELVSESEKMRMKKLEELSKNVELLQ 169
             EL    +K   K  +EL K    L+
Sbjct: 1042 SELEVRLKKEE-KSRQELEKIKRKLE 1066

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 15/133 (11%), Positives = 43/133 (32%), Gaps = 3/133 (2%)

Query: 29  KDEKEEDMSRSALALFRAKEEEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETLAD 88
              + +   + A+ L +      + +       V+       ++   +    + LE    
Sbjct: 866 LRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDG 925

Query: 89  PLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVS 148
             +         + ++  +L  L         E  E  + F  +     +  ++  +   
Sbjct: 926 ECQSLEGQSNSDLLSILAQLTEL---NYNGVPELTERKDTFFAQQWTGVKSSAETYKNTL 982

Query: 149 ESEKMRMKKLEEL 161
            +E  R++K+E+L
Sbjct: 983 LAELERLQKIEDL 995

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 24/157 (15%), Positives = 55/157 (35%), Gaps = 24/157 (15%)

Query: 9   QLQVQKVKNPGLVSCNGSPTKDEKEEDMSRSALALF-RAKEEEIERKKVEVRDKVFAQLG 67
            L      +  L   + + T DE      +S L  +   + +++ R+ +    +  + + 
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDE-----VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 68  RVEEATKRLSEIREELETLADPLRK-DVSVVRKKIDTLNKELKPLGLTCQRKEREYKEAL 126
                      IR+ L T  D  +  +   +   I++    L+P         R+  + L
Sbjct: 335 E---------SIRDGLATW-DNWKHVNCDKLTTIIESSLNVLEPAEY------RKMFDRL 378

Query: 127 EAFNDKNKEKAQLVSKL-MELVSESEKMRMKKLEELS 162
             F         L+S +  +++     + + KL + S
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 24/137 (17%), Positives = 56/137 (40%), Gaps = 4/137 (2%)

Query: 30  DEKEEDMSRSALALFRAKEEEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETLADP 89
           + +   +      +F+   E+I  +      ++F ++    +  K   E++E++E L+  
Sbjct: 136 ENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKS 195

Query: 90  L---RKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMEL 146
                K+   +  ++ T       +     R    Y EA   F   N E  QL ++  ++
Sbjct: 196 ATESIKNRRRIHGELKTYKSPGLEVLFQGPRGS-RYDEAEGRFEVINNETEQLKAEEKKI 254

Query: 147 VSESEKMRMKKLEELSK 163
           +++  K++ K+ E   K
Sbjct: 255 LNQFLKIKKKRKELFEK 271

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 15/133 (11%), Positives = 43/133 (32%), Gaps = 3/133 (2%)

Query: 31   EKEEDMSRSALALFRAKEEEIERKKVEVRDKVFAQLGRVEEATKRLSEIREELETLADPL 90
             + +   + A+ L +      + +       V+       ++   +    + LE      
Sbjct: 876  IELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGEC 935

Query: 91   RKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLMELVSES 150
            +         + ++  +L  L         E  E  + F  +     +  ++  +    +
Sbjct: 936  QSLEGQSNSDLLSILAQLTEL---NYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLA 992

Query: 151  EKMRMKKLEELSK 163
            E  R++K+E+L  
Sbjct: 993  ELERLQKIEDLHH 1005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	169
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	87.94
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	85.89

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=87.94  E-value=9.1  Score=32.14  Aligned_cols=32  Identities=13%  Similarity=0.052  Sum_probs=13.9

Q ss_pred             HHHHhhccchhhHHHHHHHHHHhhhhhcccch
Q 030894           80 REELETLADPLRKDVSVVRKKIDTLNKELKPL  111 (169)
Q Consensus        80 reELE~laDP~RKEV~~vRKkID~vNreLKpL  111 (169)
                      ++.+....|.+.+....+.+-+..+-....++
T Consensus       490 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  521 (597)
T 3oja_B          490 LRRYRLPKDGLARSSDNLNKVFTHLKERQAFK  521 (597)
T ss_dssp             HHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCccccccCCHHHHHHHHHHHHHhhhhhh
Confidence            33444444555444444444444443333333

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=85.89  E-value=8.7  Score=28.34  Aligned_cols=27  Identities=11%  Similarity=0.224  Sum_probs=13.1

Q ss_pred             HHHHHhhccchhhHHHHHHHHHHhhhh
Q 030894           79 IREELETLADPLRKDVSVVRKKIDTLN  105 (169)
Q Consensus        79 IreELE~laDP~RKEV~~vRKkID~vN  105 (169)
                      ++++|+.+.+-+.+=+..++++|..+.
T Consensus        47 ~~~~i~~l~~~i~~~~~~~~~~lk~l~   73 (196)
T 1fio_A           47 LRHSLDNFVAQATDLQFKLKNEIKSAQ   73 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555544444444544444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	169
d1fioa_	196	Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	82.47

>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.47  E-value=5  Score=26.63  Aligned_cols=89  Identities=10%  Similarity=0.213  Sum_probs=46.4

Q ss_pred             HhchhHHHHhhHHHHHHHHhhccchhhHHHHHHHHHHhhhhhcccchhhhHHhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 030894           65 QLGRVEEATKRLSEIREELETLADPLRKDVSVVRKKIDTLNKELKPLGLTCQRKEREYKEALEAFNDKNKEKAQLVSKLM  144 (169)
Q Consensus        65 qLGRvEeetkrLa~IreELE~laDP~RKEV~~vRKkID~vNreLKpLg~tcqKKEkEYKeaLEAfNEKnkEKa~LV~~Lm  144 (169)
                      .|-.+.....+|..+...+  +..+...+...++..|+.+..++.-+...|...-+..+.--..-+.+.--...|.+.|.
T Consensus        17 ~i~~i~~~i~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~l~   94 (196)
T d1fioa_          17 DLDKYDHTINQVDSLHKRL--LTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFL   94 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence            3333444444444444433  23455566667777777777777777777765554444332222223333445555666


Q ss_pred             HHhhHHHHHHH
Q 030894          145 ELVSESEKMRM  155 (169)
Q Consensus       145 ELv~ESErlRm  155 (169)
                      +++..--..-.
T Consensus        95 ~~~~~f~~~q~  105 (196)
T d1fioa_          95 KLIQDYRIVDS  105 (196)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            65555444333