Citrus Sinensis ID: 030904

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MAVPRNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQNDLVSLFIMQQEVNTWMS
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHcccccHHHHHHccccccccccccccHHHHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccHHEEEEEccccccccc
Coil and Loop (DISEMBL)
mavprngmmeeddseednalfeedgvnmdlesetpphlRDLAAAAQLGDVHSLRLALDnlsgsidepvedgdtALHLTCLYGYLPCVQLLLERgasleakdedgaiplhdacaGGFIEIVQLLINSASGTECVKRMLETvdaegdtdcddqnDLVSLFIMQQEVNTWMS
Flexible Loop (DISEMBL)
mavprngmmeeddseedNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVdaegdtdcDDQNDLVSLFIMQQEVNTWMS
Low Complexity Region (SEG)
MAVPRNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQNDLVSLFIMQQEVNTWMS
Disordered region (IsUnstruct)
*******************************************AAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQNDLVSLFIMQQEV*****
Disordered Region (DISOPRED)
MAVPRNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQNDLVSLFIMQQEV*****
Disordered Region (DISEMBL)
****************DNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQNDLVSLFIMQQEVNTWMS
Disordered Region (DISPRO)
**************EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECV**********GDTDCDDQNDLVSLFIMQQEVNT***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVPRNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQNDLVSLFIMQQEVNTWMS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	169	2.2.26 [Sep-21-2011]
Q9SAR5	342	Ankyrin repeat domain-con	no	no	0.497	0.245	0.435	1e-10
Q54GC8	288	Acyl-CoA-binding domain-c	yes	no	0.704	0.413	0.291	1e-08
Q8VBX0	278	Ankyrin repeat and SOCS b	yes	no	0.514	0.312	0.408	1e-08
O75179	2603	Ankyrin repeat domain-con	no	no	0.609	0.039	0.348	2e-08
Q99NH0	2603	Ankyrin repeat domain-con	no	no	0.609	0.039	0.348	2e-08
Q9VSA4	1405	Tonsoku-like protein OS=D	no	no	0.420	0.050	0.341	2e-08
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.497	0.021	0.4	3e-08
Q8WXK3	278	Ankyrin repeat and SOCS b	no	no	0.514	0.312	0.397	3e-08
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.656	0.025	0.330	4e-08
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.662	0.057	0.319	4e-08

>sp|Q9SAR5|AKR2_ARATH Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 1/85 (1%)

Query: 45  AQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDG 104
           A LGDV  L+ AL +  G+ DE   +G TALH  C YG L C Q+L++ GAS+ A D++ 
Sbjct: 226 ASLGDVEGLKAALAS-GGNKDEEDSEGRTALHFACGYGELKCAQVLIDAGASVNAVDKNK 284

Query: 105 AIPLHDACAGGFIEIVQLLINSASG 129
             PLH A   G  E V LL+ + + 
Sbjct: 285 NTPLHYAAGYGRKECVSLLLENGAA 309

Seems to be involved in the regulation of hydrogen peroxide levels during biotic and abiotic stresses by optimizing the ascorbate peroxidase 3 (APX3) hydrogen peroxide-degrading activity. This regulation might be monitored by GRF6.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54GC8|ACBD6_DICDI Acyl-CoA-binding domain-containing protein 6 homolog OS=Dictyostelium discoideum GN=acbd6 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 1/120 (0%)

Query: 39  RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
           +DL     + D+  ++  ++N    I+E  EDG TAL   C  GY    +LL+E G+++ 
Sbjct: 169 QDLGYWVSVNDIERVKKEIENDKNIINEVDEDGRTALIWACDRGYFEIAKLLIENGSNVN 228

Query: 99  AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQNDLVSLF 158
            +D +G  PLH A      EI +LL++ +S  + +K   +++ ++   D     ++ SLF
Sbjct: 229 VQDGEGMTPLHYAVVCDQFEICKLLLSQSSIDKSIKDNSDSIPSDF-IDSSTSENIKSLF 287

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA. Does not bind fatty acids.

Dictyostelium discoideum (taxid: 44689)

>sp|Q8VBX0|ASB13_MOUSE Ankyrin repeat and SOCS box protein 13 OS=Mus musculus GN=Asb13 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 6/93 (6%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92
            TP H      AAQ G+   L+  +D+    +++   D  T LH   L G   CVQLLL 
Sbjct: 20  RTPVH-----EAAQRGESLQLQQLIDS-GACVNQVTVDSITPLHAASLQGQAQCVQLLLA 73

Query: 93  RGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
            GA ++A++ DG+ PL DACA G IE V+LL++
Sbjct: 74  AGAQVDARNIDGSTPLCDACASGSIECVKLLLS 106

May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Mus musculus (taxid: 10090)

>sp|O75179|ANR17_HUMAN Ankyrin repeat domain-containing protein 17 OS=Homo sapiens GN=ANKRD17 PE=1 SV=3

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 9/112 (8%)

Query: 18  NALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHL 77
           +A  E+ G+  D+   TP     L AAA  G V  ++L L +    ++     G+TAL  
Sbjct: 290 HANVEDRGIKGDI---TP-----LMAAANGGHVKIVKLLLAH-KADVNAQSSTGNTALTY 340

Query: 78  TCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
            C  GY+  V++LLE GAS+E  +E+G  PL +A + G +E+ +LL+ + +G
Sbjct: 341 ACAGGYVDVVKVLLESGASIEDHNENGHTPLMEAGSAGHVEVARLLLENGAG 392

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification (By similarity). Target of enterovirus 71 which is the major etiological agent of HFMD (hand, foot and mouth disease).

Homo sapiens (taxid: 9606)

>sp|Q99NH0|ANR17_MOUSE Ankyrin repeat domain-containing protein 17 OS=Mus musculus GN=Ankrd17 PE=1 SV=2

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 9/112 (8%)

Query: 18  NALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHL 77
           +A  E+ G+  D+   TP     L AAA  G V  ++L L +    ++     G+TAL  
Sbjct: 286 HANVEDRGIKGDI---TP-----LMAAANGGHVKIVKLLLAH-KADVNAQSSTGNTALTY 336

Query: 78  TCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
            C  GY+  V++LLE GAS+E  +E+G  PL +A + G +E+ +LL+ + +G
Sbjct: 337 ACAGGYVDVVKVLLESGASIEDHNENGHTPLMEAGSAGHVEVARLLLENGAG 388

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification.

Mus musculus (taxid: 10090)

>sp|Q9VSA4|TONSL_DROME Tonsoku-like protein OS=Drosophila melanogaster GN=CG7457 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 8/79 (10%)

Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
           G+T LH  C+ G L  V+ L+++G ++  +D  G +PLH+AC  G+ EIV+LL++  + +
Sbjct: 539 GETQLHQACISGNLELVRRLIDQGHTVNVRDHAGWLPLHEACNHGYREIVELLLDKGAAS 598

Query: 131 ECVKRMLETVDAEGDTDCD 149
                    ++ +G T CD
Sbjct: 599 --------AINDKGGTSCD 609

Drosophila melanogaster (taxid: 7227)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 41  LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
           L  A++ G+ + ++L LD   G ID    DG T LH     G+   V+LLLERGA L A+
Sbjct: 270 LHVASKRGNTNMVKLLLDR-GGQIDAKTRDGLTPLHCAARSGHDQVVELLLERGAPLLAR 328

Query: 101 DEDGAIPLHDACAGGFIEIVQLLIN 125
            ++G  PLH A  G  +E V+ L+ 
Sbjct: 329 TKNGLSPLHMAAQGDHVECVKHLLQ 353

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q8WXK3|ASB13_HUMAN Ankyrin repeat and SOCS box protein 13 OS=Homo sapiens GN=ASB13 PE=1 SV=2

 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 6/93 (6%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92
            TP H      AAQ G+   L+  +++    +++   D  T LH   L G   CVQLLL 
Sbjct: 20  RTPVH-----EAAQRGESLQLQQLIES-GACVNQVTVDSITPLHAASLQGQARCVQLLLA 73

Query: 93  RGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
            GA ++A++ DG+ PL DACA G IE V+LL++
Sbjct: 74  AGAQVDARNIDGSTPLCDACASGSIECVKLLLS 106

May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Homo sapiens (taxid: 9606)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 10/121 (8%)

Query: 11  EDDSEEDNALFEEDGVNMDLESE---TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEP 67
           +DD++    L + D  N D+ES+   TP H+     AA  G+++   L L N + ++D  
Sbjct: 212 KDDTKAAALLLQNDN-NADVESKSGFTPLHI-----AAHYGNINVATLLL-NRAAAVDFT 264

Query: 68  VEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSA 127
             +  T LH+    G    V+LLL+RGA ++AK  DG  PLH     G  ++V++L++ A
Sbjct: 265 ARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRA 324

Query: 128 S 128
           +
Sbjct: 325 A 325

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 10/122 (8%)

Query: 10  EEDDSEEDNALFEEDGVNMDLESE---TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDE 66
            +DD++    L + D  N D+ES+   TP H+     AA  G+++   L L N + ++D 
Sbjct: 194 RKDDTKAAALLLQND-TNADVESKSGFTPLHI-----AAHYGNINVATLLL-NRAAAVDF 246

Query: 67  PVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINS 126
              +  T LH+    G    V+LLL+RGA ++AK  DG  PLH     G  ++V++L++ 
Sbjct: 247 TARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDR 306

Query: 127 AS 128
           ++
Sbjct: 307 SA 308

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
449440147	209	PREDICTED: tankyrase-1-like [Cucumis sat	0.857	0.693	0.791	3e-58
255556842	203	ankyrin repeat-containing protein, putat	0.857	0.714	0.780	3e-56
351725263	204	uncharacterized protein LOC100527544 [Gl	0.857	0.710	0.736	6e-55
225441151	201	PREDICTED: BRCA1-associated RING domain	0.840	0.706	0.777	6e-55
356533285	204	PREDICTED: ankyrin-1-like [Glycine max]	0.857	0.710	0.743	6e-55
388499846	203	unknown [Medicago truncatula]	0.852	0.709	0.736	2e-52
224068837	201	predicted protein [Populus trichocarpa]	0.857	0.721	0.773	2e-52
224140249	197	predicted protein [Populus trichocarpa]	0.857	0.736	0.773	7e-51
18398673	206	ankyrin repeat-containing protein [Arabi	0.863	0.708	0.702	8e-48
6681330	185	hypothetical protein [Arabidopsis thalia	0.863	0.789	0.702	1e-47

>gi|449440147|ref|XP_004137846.1| PREDICTED: tankyrase-1-like [Cucumis sativus] gi|449501039|ref|XP_004161261.1| PREDICTED: tankyrase-1-like [Cucumis sativus]

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 118/149 (79%), Positives = 135/149 (90%), Gaps = 4/149 (2%)

Query: 1   MAVP--RNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALD 58
           MAVP  RNG+++EDD EEDNALFEEDGV ++ +S+TPPHLR LA AAQLGDV  LR ALD
Sbjct: 1   MAVPGRRNGVVDEDDHEEDNALFEEDGV-IEFDSDTPPHLRPLATAAQLGDVDCLRTALD 59

Query: 59  NLS-GSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFI 117
           NL+ GSI++ VEDGDTALHLTCLYG+LPCV+LLLERGA+LE +DEDGAIPLHDACAGGF+
Sbjct: 60  NLTLGSINDAVEDGDTALHLTCLYGHLPCVRLLLERGAALEVQDEDGAIPLHDACAGGFV 119

Query: 118 EIVQLLINSASGTECVKRMLETVDAEGDT 146
           EIVQLLINSA+ TECVKRMLE+VDAEGDT
Sbjct: 120 EIVQLLINSANDTECVKRMLESVDAEGDT 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556842|ref|XP_002519454.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223541317|gb|EEF42868.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 114/146 (78%), Positives = 137/146 (93%), Gaps = 1/146 (0%)

Query: 1   MAVPRNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNL 60
           MAV R+G++EE+++EEDNALFEE  + + L+S+TPPHL++LAAAAQ+GDV +LR ALDNL
Sbjct: 1   MAVHRDGLIEEEENEEDNALFEEHDL-IHLDSDTPPHLQELAAAAQVGDVDALRRALDNL 59

Query: 61  SGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIV 120
           +GSIDEPVEDGDTALHL CLYGYLPCV+LLLERGA+LEAKDEDGAIPLHDACAGGF +IV
Sbjct: 60  NGSIDEPVEDGDTALHLACLYGYLPCVELLLERGANLEAKDEDGAIPLHDACAGGFAQIV 119

Query: 121 QLLINSASGTECVKRMLETVDAEGDT 146
           QLL+NSA+G+EC++RMLETVDAEGDT
Sbjct: 120 QLLLNSANGSECIRRMLETVDAEGDT 145

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725263|ref|NP_001237598.1| uncharacterized protein LOC100527544 [Glycine max] gi|255632580|gb|ACU16640.1| unknown [Glycine max]

 Score =  218 bits (556), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 109/148 (73%), Positives = 132/148 (89%), Gaps = 3/148 (2%)

Query: 1   MAVP--RNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALD 58
           MAVP  RNG+ ++++  +DNALFEE GV  D +++TPPHLRDL+AAAQ+GD H+LRLALD
Sbjct: 1   MAVPGRRNGINDDEEELDDNALFEEQGVVED-DTDTPPHLRDLSAAAQIGDAHALRLALD 59

Query: 59  NLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE 118
           NL+GSIDEPVEDGDTALHLTCLYG+L CVQLL+ERGA++EAKDE+GAIPLHDACAGGF E
Sbjct: 60  NLTGSIDEPVEDGDTALHLTCLYGHLACVQLLIERGANIEAKDEEGAIPLHDACAGGFTE 119

Query: 119 IVQLLINSASGTECVKRMLETVDAEGDT 146
           IVQLL+N A+  E +KRMLE+VD+EGDT
Sbjct: 120 IVQLLLNRANDAEHIKRMLESVDSEGDT 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441151|ref|XP_002267396.1| PREDICTED: BRCA1-associated RING domain protein 1 [Vitis vinifera] gi|297739983|emb|CBI30165.3| unnamed protein product [Vitis vinifera]

 Score =  218 bits (555), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 115/148 (77%), Positives = 128/148 (86%), Gaps = 6/148 (4%)

Query: 1   MAVP--RNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALD 58
           MAVP  RNG+MEEDD + D A+F   G  ++ E E P HLR+LAAAAQLGDV +LRLALD
Sbjct: 1   MAVPGRRNGLMEEDD-DNDEAVF---GELIEDEVEAPAHLRNLAAAAQLGDVDALRLALD 56

Query: 59  NLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE 118
            L+GSIDEPVEDGDTALHLTCLYG+LPCVQLLLERGASLEAKDEDGAIPLHDACAGGF E
Sbjct: 57  TLNGSIDEPVEDGDTALHLTCLYGFLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFTE 116

Query: 119 IVQLLINSASGTECVKRMLETVDAEGDT 146
           IV+LL+NS + TECVKRMLE+VD EGDT
Sbjct: 117 IVELLMNSTNNTECVKRMLESVDVEGDT 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533285|ref|XP_003535196.1| PREDICTED: ankyrin-1-like [Glycine max]

 Score =  218 bits (555), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 110/148 (74%), Positives = 131/148 (88%), Gaps = 3/148 (2%)

Query: 1   MAVP--RNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALD 58
           MAVP  RNGM ++++  +DNALFEE G   D +++TPPHLRDL+AAAQLGDVH+LR+ALD
Sbjct: 1   MAVPGRRNGMNDDEEELDDNALFEEQGAVED-DADTPPHLRDLSAAAQLGDVHALRIALD 59

Query: 59  NLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE 118
           NL+GSIDEPVEDGDTALHLTCLYG+L CVQLLLERGA++EA DEDGAIPLHDACAGGF E
Sbjct: 60  NLTGSIDEPVEDGDTALHLTCLYGHLACVQLLLERGANIEANDEDGAIPLHDACAGGFTE 119

Query: 119 IVQLLINSASGTECVKRMLETVDAEGDT 146
           IVQLL++ A+  E +KRMLE+VD+EGDT
Sbjct: 120 IVQLLLSRANDAEHIKRMLESVDSEGDT 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499846|gb|AFK37989.1| unknown [Medicago truncatula]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/148 (73%), Positives = 126/148 (85%), Gaps = 4/148 (2%)

Query: 1   MAVP--RNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALD 58
           MAVP  RNG+ EEDD EE N LF E+G+  + ES+TPPHLRDL+ AA  GD+++LRLA+D
Sbjct: 1   MAVPGRRNGLNEEDD-EESNGLFGEEGLVAE-ESDTPPHLRDLSHAATHGDLNALRLAID 58

Query: 59  NLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE 118
           NLSGSIDEPVEDGDTALHLTCLYG+  C QLLLERGA+LEA DEDGAIPLHDACAGGFI 
Sbjct: 59  NLSGSIDEPVEDGDTALHLTCLYGHFECAQLLLERGANLEAMDEDGAIPLHDACAGGFIN 118

Query: 119 IVQLLINSASGTECVKRMLETVDAEGDT 146
           IVQLL+N A+  E +KRMLE+VD+EGDT
Sbjct: 119 IVQLLLNRANNAEHIKRMLESVDSEGDT 146

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068837|ref|XP_002326212.1| predicted protein [Populus trichocarpa] gi|222833405|gb|EEE71882.1| predicted protein [Populus trichocarpa]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/146 (77%), Positives = 128/146 (87%), Gaps = 1/146 (0%)

Query: 1   MAVPRNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNL 60
           MAV  + +MEE+++EEDNALFE DG+ +D +S+ PPHL DLA AAQLGD+ +LR ALDNL
Sbjct: 1   MAVHLDNLMEEEENEEDNALFEGDGL-VDQDSDIPPHLLDLARAAQLGDLDALRNALDNL 59

Query: 61  SGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIV 120
           +GSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGA+LEAKDEDGAIPLHDACAGGF EI 
Sbjct: 60  NGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGANLEAKDEDGAIPLHDACAGGFTEIA 119

Query: 121 QLLINSASGTECVKRMLETVDAEGDT 146
           QLL+N+AS  E VKRMLE VD EGDT
Sbjct: 120 QLLLNTASSAERVKRMLEAVDDEGDT 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140249|ref|XP_002323496.1| predicted protein [Populus trichocarpa] gi|222868126|gb|EEF05257.1| predicted protein [Populus trichocarpa]

 Score =  204 bits (520), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 113/146 (77%), Positives = 129/146 (88%), Gaps = 1/146 (0%)

Query: 1   MAVPRNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNL 60
           MAV R+ ++EE+++EEDNALFE DG+ +D +S+ PPHLRDLA AAQ GDV +LR ALDNL
Sbjct: 1   MAVHRDNLLEEEENEEDNALFEGDGL-VDQDSDIPPHLRDLARAAQTGDVDALRYALDNL 59

Query: 61  SGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIV 120
           +GSIDEPVEDGDTALHLTCLYGY PCVQLLLERGA+LEAKDE+GAIPLHDACAGGF EIV
Sbjct: 60  NGSIDEPVEDGDTALHLTCLYGYCPCVQLLLERGANLEAKDEEGAIPLHDACAGGFTEIV 119

Query: 121 QLLINSASGTECVKRMLETVDAEGDT 146
           QLL+NSA+  E VKRMLE VD EGDT
Sbjct: 120 QLLVNSANSAERVKRMLEIVDDEGDT 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398673|ref|NP_566360.1| ankyrin repeat-containing protein [Arabidopsis thaliana] gi|21554034|gb|AAM63115.1| unknown [Arabidopsis thaliana] gi|89001029|gb|ABD59104.1| At3g09890 [Arabidopsis thaliana] gi|110743883|dbj|BAE99776.1| hypothetical protein [Arabidopsis thaliana] gi|332641305|gb|AEE74826.1| ankyrin repeat-containing protein [Arabidopsis thaliana]

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 104/148 (70%), Positives = 124/148 (83%), Gaps = 2/148 (1%)

Query: 1   MAVPR--NGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALD 58
           MAVPR  NG+ EE+D + +NA+FEE+GV+ D +SE P HLRDLAAAAQ GDV +LR A+D
Sbjct: 1   MAVPRGGNGLNEEEDVDGENAIFEENGVDYDTDSELPSHLRDLAAAAQAGDVAALRTAID 60

Query: 59  NLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE 118
           NL+G +DEP+ED D+ALHL CLYG+LPCVQLLLERGA +E KDED AIPLHDACAGG++E
Sbjct: 61  NLNGRVDEPLEDNDSALHLACLYGHLPCVQLLLERGADMEVKDEDEAIPLHDACAGGYLE 120

Query: 119 IVQLLINSASGTECVKRMLETVDAEGDT 146
           IVQLL + AS  ECVKRM+ET D EGDT
Sbjct: 121 IVQLLFSRASSPECVKRMIETADIEGDT 148

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6681330|gb|AAF23247.1|AC015985_5 hypothetical protein [Arabidopsis thaliana]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 104/148 (70%), Positives = 124/148 (83%), Gaps = 2/148 (1%)

Query: 1   MAVPR--NGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALD 58
           MAVPR  NG+ EE+D + +NA+FEE+GV+ D +SE P HLRDLAAAAQ GDV +LR A+D
Sbjct: 1   MAVPRGGNGLNEEEDVDGENAIFEENGVDYDTDSELPSHLRDLAAAAQAGDVAALRTAID 60

Query: 59  NLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE 118
           NL+G +DEP+ED D+ALHL CLYG+LPCVQLLLERGA +E KDED AIPLHDACAGG++E
Sbjct: 61  NLNGRVDEPLEDNDSALHLACLYGHLPCVQLLLERGADMEVKDEDEAIPLHDACAGGYLE 120

Query: 119 IVQLLINSASGTECVKRMLETVDAEGDT 146
           IVQLL + AS  ECVKRM+ET D EGDT
Sbjct: 121 IVQLLFSRASSPECVKRMIETADIEGDT 148

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
TAIR|locus:2085094	206	AT3G09890 [Arabidopsis thalian	0.863	0.708	0.702	3.8e-53
ZFIN|ZDB-GENE-091118-116	294	asb13b "ankyrin repeat and SOC	0.473	0.272	0.451	6.6e-12
UNIPROTKB|E1BJ12	278	ASB13 "Uncharacterized protein	0.479	0.291	0.402	2.5e-11
TAIR|locus:2827572	344	AKR2B "ankyrin repeat-containi	0.508	0.25	0.443	4e-11
UNIPROTKB|F1RYV8	278	ASB13 "Uncharacterized protein	0.479	0.291	0.402	4.3e-11
MGI|MGI:2145525	278	Asb13 "ankyrin repeat and SOCS	0.479	0.291	0.426	4.3e-11
RGD|1310387	278	Asb13 "ankyrin repeat and SOCS	0.473	0.287	0.445	7.3e-11
UNIPROTKB|F1P8J7	284	ASB13 "Uncharacterized protein	0.479	0.285	0.414	8e-11
ZFIN|ZDB-GENE-051023-5	168	ppp1r27 "protein phosphatase 1	0.550	0.553	0.385	9.4e-11
TAIR|locus:505006600	144	AT5G12320 [Arabidopsis thalian	0.757	0.888	0.308	1.2e-10

TAIR|locus:2085094 AT3G09890 [Arabidopsis thaliana (taxid:3702)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 104/148 (70%), Positives = 124/148 (83%)

Query:     1 MAVPR--NGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALD 58
             MAVPR  NG+ EE+D + +NA+FEE+GV+ D +SE P HLRDLAAAAQ GDV +LR A+D
Sbjct:     1 MAVPRGGNGLNEEEDVDGENAIFEENGVDYDTDSELPSHLRDLAAAAQAGDVAALRTAID 60

Query:    59 NLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE 118
             NL+G +DEP+ED D+ALHL CLYG+LPCVQLLLERGA +E KDED AIPLHDACAGG++E
Sbjct:    61 NLNGRVDEPLEDNDSALHLACLYGHLPCVQLLLERGADMEVKDEDEAIPLHDACAGGYLE 120

Query:   119 IVQLLINSASGTECVKRMLETVDAEGDT 146
             IVQLL + AS  ECVKRM+ET D EGDT
Sbjct:   121 IVQLLFSRASSPECVKRMIETADIEGDT 148

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

ZFIN|ZDB-GENE-091118-116 asb13b "ankyrin repeat and SOCS box containing 13b" [Danio rerio (taxid:7955)]

 Score = 164 (62.8 bits), Expect = 6.6e-12, P = 6.6e-12
 Identities = 37/82 (45%), Positives = 53/82 (64%)

Query:    43 AAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDE 102
             AAAQ G V  LR  ++N   S++    D  T LH  C+ G+  CV+LLL+ GA ++A++ 
Sbjct:    32 AAAQ-GRVVQLRKLIEN-GASVNIVAVDSITPLHEACIQGHTQCVKLLLDAGAHVDARNI 89

Query:   103 DGAIPLHDACAGGFIEIVQLLI 124
             DG+ PL DACA G +E V+LL+
Sbjct:    90 DGSTPLCDACAAGSLECVKLLL 111

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|E1BJ12 ASB13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 158 (60.7 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 33/82 (40%), Positives = 51/82 (62%)

Query:    44 AAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDED 103
             AAQ G+   L+  +++    +++   D  T LH   L G + CVQLLL  GA ++A++ D
Sbjct:    26 AAQRGETRQLQQLIES-GACVNQVTVDSITPLHAASLQGQVQCVQLLLAAGAQVDARNID 84

Query:   104 GAIPLHDACAGGFIEIVQLLIN 125
             G+ PL DACA G +E V+LL++
Sbjct:    85 GSTPLCDACASGSVECVKLLLS 106

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

TAIR|locus:2827572 AKR2B "ankyrin repeat-containing 2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 4.0e-11, P = 4.0e-11
 Identities = 39/88 (44%), Positives = 52/88 (59%)

Query:    45 AQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDG 104
             A LGDV  L+ AL +  G+ DE   +G TALH  C YG + C Q+LL+ GA+  A D++ 
Sbjct:   228 ASLGDVEGLKAALAS-GGNKDEEDSEGRTALHFACGYGEVRCAQVLLDAGANANAIDKNK 286

Query:   105 AIPLHDACAGGFIEIVQLLI-NSASGTE 131
               PLH A   G  E V LL+ N A+ T+
Sbjct:   287 NTPLHYAAGYGRKECVSLLLENGAAVTQ 314

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1RYV8 ASB13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 156 (60.0 bits), Expect = 4.3e-11, P = 4.3e-11
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query:    44 AAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDED 103
             AAQ G+   L+  +++    +++   D  T LH   L G   CVQLLL  GA ++A++ D
Sbjct:    26 AAQRGETRQLQQLIES-GACVNQVTVDSITPLHAASLQGQAQCVQLLLAAGAQVDARNID 84

Query:   104 GAIPLHDACAGGFIEIVQLLIN 125
             G+ PL DACA G +E V+LL++
Sbjct:    85 GSTPLCDACASGSVECVKLLLS 106

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

MGI|MGI:2145525 Asb13 "ankyrin repeat and SOCS box-containing 13" [Mus musculus (taxid:10090)]

 Score = 156 (60.0 bits), Expect = 4.3e-11, P = 4.3e-11
 Identities = 35/82 (42%), Positives = 50/82 (60%)

Query:    44 AAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDED 103
             AAQ G+   L+  +D+    +++   D  T LH   L G   CVQLLL  GA ++A++ D
Sbjct:    26 AAQRGESLQLQQLIDS-GACVNQVTVDSITPLHAASLQGQAQCVQLLLAAGAQVDARNID 84

Query:   104 GAIPLHDACAGGFIEIVQLLIN 125
             G+ PL DACA G IE V+LL++
Sbjct:    85 GSTPLCDACASGSIECVKLLLS 106

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0035556 "intracellular signal transduction" evidence=IEA

RGD|1310387 Asb13 "ankyrin repeat and SOCS box-containing 13" [Rattus norvegicus (taxid:10116)]

 Score = 154 (59.3 bits), Expect = 7.3e-11, P = 7.3e-11
 Identities = 37/83 (44%), Positives = 51/83 (61%)

Query:    44 AAQLGDVHSLRLA-LDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDE 102
             AAQ G+  SL+L  L N    +++   D  T LH   L G   CVQLLL  GA ++A++ 
Sbjct:    26 AAQRGE--SLQLQQLINSGACVNQVTVDSITPLHAASLQGQAQCVQLLLAAGAQVDARNI 83

Query:   103 DGAIPLHDACAGGFIEIVQLLIN 125
             DG+ PL DACA G +E V+LL++
Sbjct:    84 DGSTPLCDACASGNVECVKLLLS 106

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|F1P8J7 ASB13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 154 (59.3 bits), Expect = 8.0e-11, P = 8.0e-11
 Identities = 34/82 (41%), Positives = 50/82 (60%)

Query:    44 AAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDED 103
             AAQ G+   L+  +++    +++   D  T LH   L G   CVQLLL  GA ++A++ D
Sbjct:    32 AAQRGEALQLQRLIES-GACVNQVTVDSITPLHAASLQGQAQCVQLLLAAGAQVDARNID 90

Query:   104 GAIPLHDACAGGFIEIVQLLIN 125
             G+ PL DACA G IE V+LL++
Sbjct:    91 GSTPLCDACASGSIECVKLLLS 112

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

ZFIN|ZDB-GENE-051023-5 ppp1r27 "protein phosphatase 1, regulatory subunit 27" [Danio rerio (taxid:7955)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 37/96 (38%), Positives = 51/96 (53%)

Query:    63 SIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQL 122
             S+D     G  A+H   L G + CV+LL++ GA +  +DEDG  PLH AC+ GF EI + 
Sbjct:    71 SLDTIYHSGMAAIHEAVLSGNMECVKLLVKSGADITQRDEDGWTPLHMACSDGFPEIAKY 130

Query:   123 LINSASGTECVKRMLETVDAEGDTDCDDQNDLVSLF 158
             LI+  + TE      E      D DC    +L+ LF
Sbjct:   131 LISLGADTEAKNDCGEKPADLIDPDC---KELLHLF 163

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006600 AT5G12320 [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 41/133 (30%), Positives = 67/133 (50%)

Query:    40 DLAAAAQLGDVHSLR-LALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
             DL  AA+  D+  LR LA D LS  +      G TALH+    G++  V+ L+  G  + 
Sbjct:    14 DLLEAARYNDIDDLRTLASDGLS--LHSRDSQGRTALHMAAANGHMTIVEYLISEGVDIN 71

Query:    99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET-VDAEGDTDCDDQNDLVSL 157
             A +++   PLH AC  G +E+V+ LI + +    + R   T +D     +  +  D ++ 
Sbjct:    72 ALNDENNAPLHWACLNGHVEVVKRLILAGASLSLLNRYERTPMDEAIGAEKMEIIDAINT 131

Query:   158 FIMQQEV-NTWMS 169
              + Q E+ NT M+
Sbjct:   132 TVAQMELENTSMT 144

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00000603001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (201 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00007629001	SubName- Full=Chromosome chr2 scaffold_196, whole genome shotgun sequence; (174 aa)			•						0.451
	GSVIVG00011614001	SubName- Full=Chromosome chr5 scaffold_322, whole genome shotgun sequence; Flags- Fragment; (205 aa)			•						0.405

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	169
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-15
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-09
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-04
smart00248	30	smart00248, ANK, ankyrin repeats	4e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	8e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.001
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.002
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.002
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 74.0 bits (182), Expect = 1e-17
 Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 6/97 (6%)

Query: 28  MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV 87
            D +  TP HL     AA+ G +  ++L L+     ++   +DG+T LHL    G L  V
Sbjct: 36  KDNDGRTPLHL-----AAKNGHLEIVKLLLEKG-ADVNARDKDGNTPLHLAARNGNLDVV 89

Query: 88  QLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
           +LLL+ GA + A+D+DG  PLH A   G +E+V+LL+
Sbjct: 90  KLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 74.0 bits (182), Expect = 1e-17
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 8/106 (7%)

Query: 41  LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
           L  AA  G +  ++L L+N    ++    DG T LHL    G+L  V+LLLE+GA + A+
Sbjct: 11  LHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69

Query: 101 DEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
           D+DG  PLH A   G +++V+LL+   +        +   D +G T
Sbjct: 70  DKDGNTPLHLAARNGNLDVVKLLLKHGA-------DVNARDKDGRT 108

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 66.1 bits (162), Expect = 6e-15
 Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 7/87 (8%)

Query: 41  LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDT--ALHLTCLYGYLPCVQLLLERGASLE 98
           L  AA+ G++  ++L L+         V  GDT  ALHL    G L  V+LLLE GA + 
Sbjct: 1   LHLAAKNGNLELVKLLLEK-----GADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVN 55

Query: 99  AKDEDGAIPLHDACAGGFIEIVQLLIN 125
           AKD+DG   LH A   G +EIV+LL+ 
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 52.2 bits (126), Expect = 4e-10
 Identities = 23/54 (42%), Positives = 32/54 (59%)

Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
           G TALH   + G L  V+ LLE+G  +   DEDG   LH A   G +E+++LL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 49.9 bits (120), Expect = 8e-09
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)

Query: 23  EDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYG 82
           E G +++L          L  AA+ G++  ++L L++    ++   +DG+TALHL    G
Sbjct: 18  EKGADVNLGDTDTA----LHLAARNGNLEIVKLLLEH-GADVNAKDKDGNTALHLAARNG 72

Query: 83  YLPCVQLLLERGASLEAKD 101
            L  V+LLLE GA +  KD
Sbjct: 73  NLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 26/54 (48%), Positives = 33/54 (61%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           DG T LH+ C  G++  V++LLE GA     D+DG  PL  A   GF E+VQLL
Sbjct: 114 DGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 49.8 bits (118), Expect = 8e-08
 Identities = 24/63 (38%), Positives = 33/63 (52%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
           EDG+T LH   L G    V+LLLE GA   +++  G   L  A   G IE+V+LL++   
Sbjct: 145 EDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGL 204

Query: 129 GTE 131
              
Sbjct: 205 HLS 207

Length = 235

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 44.5 bits (106), Expect = 3e-07
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDE 102
           DG+T LHL    G+L  V+LLLE GA + A+D+
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 47.9 bits (113), Expect = 4e-07
 Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 9/109 (8%)

Query: 40  DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLP-----CVQLLLERG 94
            L +AA  GD   ++L L + +  ++    DGDT LHL  L G  P       +LLLE G
Sbjct: 76  PLHSAASKGDDKIVKLLLASGA-DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAG 134

Query: 95  ASLE---AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETV 140
           A L+    +DEDG  PLH A   G  +IV+LL+ + +          T 
Sbjct: 135 ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTA 183

Length = 235

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 21/75 (28%), Positives = 32/75 (42%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           I+     G T LH          V+ LL+ GA+    ++ G  PLH A      EI +LL
Sbjct: 185 INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLL 244

Query: 124 INSASGTECVKRMLE 138
           +N+    + +   L 
Sbjct: 245 LNNGPSIKTIIETLL 259

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 41.6 bits (98), Expect = 5e-06
 Identities = 18/41 (43%), Positives = 22/41 (53%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLH 109
            +G+T LHL   YG L  VQ LL+ G  L  +D DG   L 
Sbjct: 14  GNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 41.3 bits (96), Expect = 6e-05
 Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 40  DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA 99
            L  A       S  L    +   +     DG   LH     G    V+LLL  GA + A
Sbjct: 42  YLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNA 101

Query: 100 KDEDGAIPLHDACAGG-----FIEIVQLLI 124
           KD DG  PLH A   G      IE+ +LL+
Sbjct: 102 KDADGDTPLHLAALNGNPPEGNIEVAKLLL 131

Length = 235

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 71  GDTALHLTCLYGY-LPCVQLLLERGASLEAKDEDGAIPLHDACAGGFI--EIVQLLIN 125
           G T LHL       L  ++LL++ GA + AKD+ G  PLH   +G  I  ++++LL+ 
Sbjct: 83  GFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLR 140

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 19/132 (14%)

Query: 34  TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
           TP HL     A  L  +  ++L +       D P  D  + LHL  + G +  ++LL++ 
Sbjct: 104 TPLHL-----ATILKKLDIMKLLIAR-GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH 157

Query: 94  GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTE------CVKRMLETVDAEGDTD 147
            A L+ +D  G  PL  A A G I I ++L++S +  +      CV  +   ++      
Sbjct: 158 KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIE------ 211

Query: 148 CDDQNDLVSLFI 159
            +++ D+V LFI
Sbjct: 212 -NNKIDIVRLFI 222

Length = 413

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 11/115 (9%)

Query: 22  EEDGVNMDLESETPPHLRD------LAAAAQLGDVHSLRLALDNLSGSIDEPVED--GDT 73
           E+D +   L+     +++D      L  A + GD+ S+++  +  +   D  +ED  G  
Sbjct: 103 EKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGA---DVNIEDDNGCY 159

Query: 74  ALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
            +H+   + +   ++LLLE+GA    KD +G  PLH+A   G    ++LLI+  +
Sbjct: 160 PIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN 214

Length = 434

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 35.6 bits (83), Expect = 4e-04
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEA 99
          DG T LHL    G L  V+LLL++GA + A
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 25/96 (26%)

Query: 62  GSIDEPVEDGDTALHLTCLYGYLPC-----VQLLLERGASLEAKDEDGAIPLH------D 110
             ++   + G T LH   L G         ++LLL +GA + A D  G  PL       +
Sbjct: 108 ADVNAKDKVGRTPLH-VYLSG--FNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRN 164

Query: 111 ACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
           A     +E+++LLI++ +        +  VD    +
Sbjct: 165 AN----VELLRLLIDAGAD-------VYAVDDRFRS 189

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 38.8 bits (90), Expect = 6e-04
 Identities = 30/86 (34%), Positives = 46/86 (53%)

Query: 40  DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA 99
           +L  A + GDV ++   LD    + D   +DG T LHL  +   L  ++LL+ RGA  + 
Sbjct: 71  ELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDI 130

Query: 100 KDEDGAIPLHDACAGGFIEIVQLLIN 125
            + D   PLH A   G I+ ++LLI+
Sbjct: 131 PNTDKFSPLHLAVMMGDIKGIELLID 156

Length = 413

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 38.8 bits (90), Expect = 7e-04
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
           G++ LH    YG   C++LL++ G  +  K ++G  PLH+A        ++LLIN+AS
Sbjct: 190 GESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLINNAS 246

Length = 434

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 14/109 (12%)

Query: 22  EEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVED--GDTALHLTC 79
           E D  NM           +L   A  G+   L    + L   +D  + D  G T LH+  
Sbjct: 519 EHDDPNMAS---------NLLTVASTGNAALLE---ELLKAKLDPDIGDSKGRTPLHIAA 566

Query: 80  LYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
             GY  CV +LL+   ++  +D +G   L +A +    +I ++L + AS
Sbjct: 567 SKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFAS 615

Length = 823

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL 91
          L  AA  G +  ++  L+     I+   EDG+TALH+    G L  ++LLL
Sbjct: 5  LHKAAISGRLELVKYLLEKGV-DINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 16/38 (42%), Positives = 25/38 (65%)

Query: 87  VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
            ++LL  GA    +D DG  PLH ACA G +++V++L+
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLL 135

Length = 664

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 4/64 (6%)

Query: 73  TALHLTCLYGYLP--CVQLLLERGASLEAKDEDGAIPLHDACAGGF-IEIVQLLINSASG 129
           TALH   L G  P   V+ L++RGA++ +K++D + PLH AC     ++++++L+++ + 
Sbjct: 410 TALHFA-LCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGAD 468

Query: 130 TECV 133
              +
Sbjct: 469 VNAI 472

Length = 682

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 33.0 bits (76), Expect = 0.004
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 70 DGDTALHLTCLYGYLPCVQLLLERGASLEA 99
          DG+T LHL    G L  V+LLLE GA + A
Sbjct: 1  DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	169
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
PHA02791	284	ankyrin-like protein; Provisional	99.93
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.93
PHA02791	284	ankyrin-like protein; Provisional	99.93
PHA02878	477	ankyrin repeat protein; Provisional	99.93
PHA02875	413	ankyrin repeat protein; Provisional	99.92
PHA02875	413	ankyrin repeat protein; Provisional	99.92
PHA02878	477	ankyrin repeat protein; Provisional	99.92
KOG0508	615	consensus Ankyrin repeat protein [General function	99.92
PHA02874	434	ankyrin repeat protein; Provisional	99.91
PHA03100	480	ankyrin repeat protein; Provisional	99.91
PHA03095	471	ankyrin-like protein; Provisional	99.91
PHA02859	209	ankyrin repeat protein; Provisional	99.91
PHA02946	446	ankyin-like protein; Provisional	99.91
PHA02874	434	ankyrin repeat protein; Provisional	99.91
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.91
PHA02859	209	ankyrin repeat protein; Provisional	99.91
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
PHA02795	437	ankyrin-like protein; Provisional	99.9
PHA03100	480	ankyrin repeat protein; Provisional	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.9
PHA03095	471	ankyrin-like protein; Provisional	99.89
PHA02798	489	ankyrin-like protein; Provisional	99.89
PHA02798	489	ankyrin-like protein; Provisional	99.89
PHA02989	494	ankyrin repeat protein; Provisional	99.89
PHA02946	446	ankyin-like protein; Provisional	99.88
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.88
PHA02989	494	ankyrin repeat protein; Provisional	99.88
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.88
PHA02730	672	ankyrin-like protein; Provisional	99.87
PHA02876	682	ankyrin repeat protein; Provisional	99.87
KOG0508	615	consensus Ankyrin repeat protein [General function	99.87
PHA02876	682	ankyrin repeat protein; Provisional	99.87
PHA02917	661	ankyrin-like protein; Provisional	99.87
PHA02884	300	ankyrin repeat protein; Provisional	99.86
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.86
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.86
KOG0510	929	consensus Ankyrin repeat protein [General function	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
PHA02795	437	ankyrin-like protein; Provisional	99.85
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.85
PHA02743	166	Viral ankyrin protein; Provisional	99.85
KOG0510	929	consensus Ankyrin repeat protein [General function	99.85
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.84
PHA02917	661	ankyrin-like protein; Provisional	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.82
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.82
PHA02730	672	ankyrin-like protein; Provisional	99.82
PHA02792	631	ankyrin-like protein; Provisional	99.81
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.81
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.79
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.79
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.77
PHA02741	169	hypothetical protein; Provisional	99.77
KOG0514	452	consensus Ankyrin repeat protein [General function	99.77
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.76
PHA02736	154	Viral ankyrin protein; Provisional	99.75
KOG0514	452	consensus Ankyrin repeat protein [General function	99.73
PHA02792	631	ankyrin-like protein; Provisional	99.72
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.71
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.7
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.7
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.7
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.69
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.68
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.68
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.67
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.65
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.62
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.6
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.6
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.59
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.57
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.55
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.53
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.53
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.48
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.46
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.41
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.4
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.37
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.35
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.33
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.2
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.19
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.15
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.07
PF13606	30	Ank_3: Ankyrin repeat	98.95
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.93
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.88
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.87
KOG0522	560	consensus Ankyrin repeat protein [General function	98.86
PF13606	30	Ank_3: Ankyrin repeat	98.86
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.8
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.7
KOG0511	516	consensus Ankyrin repeat protein [General function	98.7
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.68
KOG2384	223	consensus Major histocompatibility complex protein	98.67
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.67
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.59
KOG0511	516	consensus Ankyrin repeat protein [General function	98.51
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.44
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.41
KOG0522	560	consensus Ankyrin repeat protein [General function	98.4
KOG2384	223	consensus Major histocompatibility complex protein	98.27
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.25
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.22
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.09
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.07
KOG2505	591	consensus Ankyrin repeat protein [General function	97.55
KOG2505	591	consensus Ankyrin repeat protein [General function	97.32
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.27
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.22
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.32
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.22
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	89.57
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	85.31

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.2e-30  Score=168.74  Aligned_cols=141  Identities=26%  Similarity=0.351  Sum_probs=118.2

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER   93 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~   93 (169)
                      ..+++.||+. ..++.++..+..||||||.||..|+.++++.|+.+.++++|..+..|.|+||||+..+..+++++|++.
T Consensus        50 ~~eiv~fLls-q~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~  128 (226)
T KOG4412|consen   50 HVEIVYFLLS-QPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEK  128 (226)
T ss_pred             chhHHHHHHh-cCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhc
Confidence            4567788875 355555566888999999999999999999999877888998888999999999999999999999999


Q ss_pred             CCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccch-h----hHHHHhhhcc
Q 030904           94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQ-N----DLVSLFIMQQ  162 (169)
Q Consensus        94 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A-~----~~~~~li~~~  162 (169)
                      |+.++.+|..|+||||.|+.-|...++++|+..|+..       |.+|+.|+||||.| +    +..-+|+.+|
T Consensus       129 ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~-------n~qDk~G~TpL~~al~e~~~d~a~lLV~~g  195 (226)
T KOG4412|consen  129 GALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPL-------NTQDKYGFTPLHHALAEGHPDVAVLLVRAG  195 (226)
T ss_pred             CCCCcccccccCchhHHHHhccchhhHHHHHhcCCCC-------CcccccCccHHHHHHhccCchHHHHHHHhc
Confidence            9999999999999999999999999999999888776       78899999999988 2    6666666654

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.2e-30  Score=168.69  Aligned_cols=120  Identities=28%  Similarity=0.337  Sum_probs=114.3

Q ss_pred             chhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCccCCCCCChHHHHHhc
Q 030904           36 PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER-GASLEAKDEDGAIPLHDACAG  114 (169)
Q Consensus        36 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~-g~~~~~~~~~~~t~l~~a~~~  114 (169)
                      .+.|||||||..|+.+++.+|+...+..+|.+|..||||||+|+..|..++|+.|+.+ |++++..++.|+||||+|+..
T Consensus        37 D~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK  116 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGK  116 (226)
T ss_pred             cCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcC
Confidence            7889999999999999999999776899999999999999999999999999999999 999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          115 GFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       115 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      |..++.++|++.|+.+       +.+|..|.||||.|+     +++++||..+
T Consensus       117 ~r~eIaqlLle~ga~i-------~~kD~~~qtplHRAAavGklkvie~Li~~~  162 (226)
T KOG4412|consen  117 GRLEIAQLLLEKGALI-------RIKDKQGQTPLHRAAAVGKLKVIEYLISQG  162 (226)
T ss_pred             ChhhHHHHHHhcCCCC-------cccccccCchhHHHHhccchhhHHHHHhcC
Confidence            9999999999999987       899999999999985     9999999954

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=2.4e-26  Score=172.69  Aligned_cols=131  Identities=24%  Similarity=0.292  Sum_probs=98.1

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHHHHHH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV-EDGDTALHLTCLYGYLPCVQLL   90 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~~g~~~L~~a~~~~~~~~~~~l   90 (169)
                      ++-+.+.+++...|..++-.  +..|.++|||||.+++.+++++|+++ |+++|... ..+.||||||+++|+..++++|
T Consensus        55 G~l~~v~~lve~~g~~v~~~--D~~g~tlLHWAAiNNrl~v~r~li~~-gadvn~~gG~l~stPLHWAar~G~~~vv~lL  131 (600)
T KOG0509|consen   55 GELETVKELVESEGESVNNP--DREGVTLLHWAAINNRLDVARYLISH-GADVNAIGGVLGSTPLHWAARNGHISVVDLL  131 (600)
T ss_pred             chHHHHHHHHhhcCcCCCCC--CcCCccceeHHHHcCcHHHHHHHHHc-CCCccccCCCCCCCcchHHHHcCcHHHHHHH
Confidence            33444555444446666543  33777778888888888888888877 77888776 5577888888888888888888


Q ss_pred             HHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh
Q 030904           91 LERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN  152 (169)
Q Consensus        91 l~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~  152 (169)
                      +++||+++.+|..|.+|+|.|++.|+..++-+++.++.++       +.+|.+|+|||++|+
T Consensus       132 lqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~-------d~~D~~grTpLmwAa  186 (600)
T KOG0509|consen  132 LQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADI-------DLRDNNGRTPLMWAA  186 (600)
T ss_pred             HHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccC-------CCcCCCCCCHHHHHH
Confidence            8888888888888888888888888888888888888776       677777777777774

>PHA02791 ankyrin-like protein; Provisional

Probab=99.93  E-value=7e-25  Score=156.67  Aligned_cols=135  Identities=13%  Similarity=0.059  Sum_probs=78.4

Q ss_pred             HHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCC-cHHHHHHhcCCHHHHHHHHHc
Q 030904           15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGD-TALHLTCLYGYLPCVQLLLER   93 (169)
Q Consensus        15 ~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~-~~L~~a~~~~~~~~~~~ll~~   93 (169)
                      .+++++|++.|++++..  +..|.||||+|+..|+.+++++|++. +++++.++..|+ ||||+|+..++.+++++|++.
T Consensus        74 ~eiV~lLL~~Gadvn~~--d~~G~TpLh~Aa~~g~~eivk~Ll~~-gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~  150 (284)
T PHA02791         74 TKIVKILLFSGMDDSQF--DDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE  150 (284)
T ss_pred             HHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhc
Confidence            44555555555555432  33455666666666666666666555 555555555543 556666666666666666655


Q ss_pred             CCCCCccC-CCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCc-ccchh-----hHHHHhhhc
Q 030904           94 GASLEAKD-EDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTD-CDDQN-----DLVSLFIMQ  161 (169)
Q Consensus        94 g~~~~~~~-~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tp-l~~A~-----~~~~~li~~  161 (169)
                      +.+.  .+ ..|.||||+|++.|+.+++++|+++|+++       +.++..|.|| ||+|+     +++++||+.
T Consensus       151 ~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~-------n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~  216 (284)
T PHA02791        151 IPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTST-------NTNNSLLFIPDIKLAIDNKDLEMLQALFKY  216 (284)
T ss_pred             CCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCC-------CcccCCCCChHHHHHHHcCCHHHHHHHHHC
Confidence            4322  11 13566666666666666666666666665       5666666665 77764     777777763

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.93  E-value=1.9e-25  Score=167.96  Aligned_cols=140  Identities=22%  Similarity=0.284  Sum_probs=126.2

Q ss_pred             HHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 030904           15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG   94 (169)
Q Consensus        15 ~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g   94 (169)
                      -.+.++++++|+++|.-.- ..+.||||||+++|+..++..|+++ |++++.+|..|.+|+|.|+.+++...+.|++..|
T Consensus        91 l~v~r~li~~gadvn~~gG-~l~stPLHWAar~G~~~vv~lLlqh-GAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~  168 (600)
T KOG0509|consen   91 LDVARYLISHGADVNAIGG-VLGSTPLHWAARNGHISVVDLLLQH-GADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKG  168 (600)
T ss_pred             HHHHHHHHHcCCCccccCC-CCCCCcchHHHHcCcHHHHHHHHHc-CCCCceecCCCCcHHHHHHHhCchHHHHHHHHhc
Confidence            3588999999999996543 5778999999999999999999998 9999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhccc-CCCCCcccchh-----hHHHHhhhcccc
Q 030904           95 ASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVD-AEGDTDCDDQN-----DLVSLFIMQQEV  164 (169)
Q Consensus        95 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~-~~g~tpl~~A~-----~~~~~li~~~~~  164 (169)
                      ++++.+|.+|+|||++|+.+|+...++.|+..|+.+       +.+| ..|.||||+|+     ..+. ||.+++.
T Consensus       169 ~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~-------~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~  236 (600)
T KOG0509|consen  169 ADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASL-------LLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGA  236 (600)
T ss_pred             ccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccc-------cccccccCCchHHHHHhcCCcceEe-hhhhcCC
Confidence            999999999999999999999998899999999998       5555 99999999995     7777 5555543

>PHA02791 ankyrin-like protein; Provisional

Probab=99.93  E-value=9.4e-25  Score=156.03  Aligned_cols=133  Identities=19%  Similarity=0.122  Sum_probs=67.2

Q ss_pred             HHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 030904           15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG   94 (169)
Q Consensus        15 ~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g   94 (169)
                      ..+++++++.|++++..    .+.||||+|+..|+.++++.|+.. |++++.++..|.||||+|+..++.+++++|++.|
T Consensus        43 ~eiv~~Ll~~ga~~n~~----d~~TpLh~Aa~~g~~eiV~lLL~~-Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~g  117 (284)
T PHA02791         43 VRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFS-GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN  117 (284)
T ss_pred             HHHHHHHHHCcCCCcCC----CCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            33444455544444321    123555555555555555555544 4555555555555555555555555555555555


Q ss_pred             CCCCccCCCCC-ChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhccc-CCCCCcccchh-----hHHHHhhhc
Q 030904           95 ASLEAKDEDGA-IPLHDACAGGFIEIVQLLINSASGTECVKRMLETVD-AEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus        95 ~~~~~~~~~~~-t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~-~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      ++++.++..|+ ||||+|+..|+.+++++|++.+...         .+ ..|.||||+|+     +++++|++.
T Consensus       118 adin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~---------~d~~~g~TpLh~Aa~~g~~eiv~lLL~~  182 (284)
T PHA02791        118 WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---------FDLAILLSCIHITIKNGHVDMMILLLDY  182 (284)
T ss_pred             CCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc---------cccccCccHHHHHHHcCCHHHHHHHHHC
Confidence            55554444442 4555555555555555555543322         12 23567777664     666666663

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1.2e-24  Score=166.87  Aligned_cols=141  Identities=23%  Similarity=0.286  Sum_probs=124.6

Q ss_pred             HHHHHHHHhcCCCCcccCCCcc-hhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904           15 EEDNALFEEDGVNMDLESETPP-HLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER   93 (169)
Q Consensus        15 ~~~~~~l~~~g~~~~~~~~~~~-~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~   93 (169)
                      .++++++++.|++++..  +.. |.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|++.
T Consensus       147 ~~iv~~Ll~~gadin~~--~~~~g~tpLh~A~~~~~~~iv~~Ll~~-gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~  223 (477)
T PHA02878        147 AEITKLLLSYGADINMK--DRHKGNTALHYATENKDQRLTELLLSY-GANVNIPDKTNNSPLHHAVKHYNKPIVHILLEN  223 (477)
T ss_pred             HHHHHHHHHcCCCCCcc--CCCCCCCHHHHHHhCCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            34889999999998754  345 88999999999999999999998 999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCCChHHHHHhc-ChHHHHHHHHhcCCCchhhhhhhhcccC-CCCCcccchh---hHHHHhhhc-cccc
Q 030904           94 GASLEAKDEDGAIPLHDACAG-GFIEIVQLLINSASGTECVKRMLETVDA-EGDTDCDDQN---DLVSLFIMQ-QEVN  165 (169)
Q Consensus        94 g~~~~~~~~~~~t~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~-~g~tpl~~A~---~~~~~li~~-~~~~  165 (169)
                      |++++.+|..|.||||+|+.. ++.+++++|+++|+++       +.++. .|.||||+|.   +++++|++. .++|
T Consensus       224 ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadv-------n~~~~~~g~TpLh~A~~~~~~v~~Ll~~gadin  294 (477)
T PHA02878        224 GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDV-------NAKSYILGLTALHSSIKSERKLKLLLEYGADIN  294 (477)
T ss_pred             CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCC-------CccCCCCCCCHHHHHccCHHHHHHHHHCCCCCC
Confidence            999999999999999999975 6899999999999998       56654 7899999984   788888884 3444

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.92  E-value=6.9e-24  Score=160.01  Aligned_cols=117  Identities=27%  Similarity=0.380  Sum_probs=68.8

Q ss_pred             chhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcC
Q 030904           36 PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGG  115 (169)
Q Consensus        36 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~  115 (169)
                      .|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|
T Consensus       101 ~g~tpL~~A~~~~~~~iv~~Ll~~-gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g  179 (413)
T PHA02875        101 DGMTPLHLATILKKLDIMKLLIAR-GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKG  179 (413)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcC
Confidence            345566666666666666666655 5566555556666666666666666666666666666666666666666666666


Q ss_pred             hHHHHHHHHhcCCCchhhhhhhhcccCCC-CCcccchh-----hHHHHhhh
Q 030904          116 FIEIVQLLINSASGTECVKRMLETVDAEG-DTDCDDQN-----DLVSLFIM  160 (169)
Q Consensus       116 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~g-~tpl~~A~-----~~~~~li~  160 (169)
                      +.+++++|++.|+++       +..+..| .||+|+|+     +++++|++
T Consensus       180 ~~eiv~~Ll~~ga~~-------n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~  223 (413)
T PHA02875        180 DIAICKMLLDSGANI-------DYFGKNGCVAALCYAIENNKIDIVRLFIK  223 (413)
T ss_pred             CHHHHHHHHhCCCCC-------CcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence            666666666666655       3444444 34555553     56666665

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.92  E-value=7.4e-24  Score=159.83  Aligned_cols=137  Identities=28%  Similarity=0.308  Sum_probs=101.0

Q ss_pred             HHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCC-cccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 030904           16 EDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSI-DEPVEDGDTALHLTCLYGYLPCVQLLLERG   94 (169)
Q Consensus        16 ~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~-~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g   94 (169)
                      +++++|++.|++++..  ...+.+|||.|+..|+.+.+++|++. +... +..+..|.||||+|+..++.+++++|++.|
T Consensus        49 ~~v~~Ll~~ga~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g  125 (413)
T PHA02875         49 EAIKLLMKHGAIPDVK--YPDIESELHDAVEEGDVKAVEELLDL-GKFADDVFYKDGMTPLHLATILKKLDIMKLLIARG  125 (413)
T ss_pred             HHHHHHHhCCCCcccc--CCCcccHHHHHHHCCCHHHHHHHHHc-CCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence            3455555555544432  22334555555555555555555554 3322 233556889999999999999999999999


Q ss_pred             CCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904           95 ASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus        95 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      ++++.++..|.||||+|+..|+.+++++|+++|+++       +.+|..|.||||+|+     +++++|++.|
T Consensus       126 ad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~-------~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~g  191 (413)
T PHA02875        126 ADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL-------DIEDCCGCTPLIIAMAKGDIAICKMLLDSG  191 (413)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            999988888999999999999999999999998887       788999999999995     8899999843

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.92  E-value=6.6e-24  Score=162.70  Aligned_cols=142  Identities=23%  Similarity=0.255  Sum_probs=123.1

Q ss_pred             CCChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHH---------------------------------------
Q 030904           11 EDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVH---------------------------------------   51 (169)
Q Consensus        11 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~---------------------------------------   51 (169)
                      ..+..+++++|++.|++++..  +..|.||||+||..|+.+                                       
T Consensus        46 ~~g~~e~vk~Ll~~gadvn~~--d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~  123 (477)
T PHA02878         46 EARNLDVVKSLLTRGHNVNQP--DHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTN  123 (477)
T ss_pred             HcCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhC
Confidence            455677889999999988754  567889999999876543                                       


Q ss_pred             -------------------------HHHHHHHhCCCCCcccCCC-CCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCC
Q 030904           52 -------------------------SLRLALDNLSGSIDEPVED-GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGA  105 (169)
Q Consensus        52 -------------------------~~~~ll~~~~~~~~~~~~~-g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~  105 (169)
                                               +++.|++. |++++.++.. |.||||+|+..++.+++++|++.|++++..|..|.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~-gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~  202 (477)
T PHA02878        124 RYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSY-GADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNN  202 (477)
T ss_pred             cccCcccCcHHHHhhccchhhHHHHHHHHHHHc-CCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCC
Confidence                                     44555555 7788888888 99999999999999999999999999999999999


Q ss_pred             ChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh------hHHHHhhhcc
Q 030904          106 IPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN------DLVSLFIMQQ  162 (169)
Q Consensus       106 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~------~~~~~li~~~  162 (169)
                      ||||.|++.++.+++++|++.|+++       +.+|..|.||||+|+      +++++|++.|
T Consensus       203 tpLh~A~~~~~~~iv~~Ll~~ga~i-------n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g  258 (477)
T PHA02878        203 SPLHHAVKHYNKPIVHILLENGAST-------DARDKCGNTPLHISVGYCKDYDILKLLLEHG  258 (477)
T ss_pred             CHHHHHHHhCCHHHHHHHHHcCCCC-------CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcC
Confidence            9999999999999999999999998       789999999999984      7889999854

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=1.4e-24  Score=158.63  Aligned_cols=138  Identities=26%  Similarity=0.373  Sum_probs=127.0

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL   91 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll   91 (169)
                      -+--++++++++.|+++|...+  .+.|||..||.-|+++++++|+++ +++++..+..|.|.||+||..|+.+++++|+
T Consensus        94 AGHl~vVk~L~~~ga~VN~tT~--TNStPLraACfDG~leivKyLvE~-gad~~IanrhGhTcLmIa~ykGh~~I~qyLl  170 (615)
T KOG0508|consen   94 AGHLEVVKLLLRRGASVNDTTR--TNSTPLRAACFDGHLEIVKYLVEH-GADPEIANRHGHTCLMIACYKGHVDIAQYLL  170 (615)
T ss_pred             cCcHHHHHHHHHhcCccccccc--cCCccHHHHHhcchhHHHHHHHHc-CCCCcccccCCCeeEEeeeccCchHHHHHHH
Confidence            4456799999999988875433  455999999999999999999988 9999999999999999999999999999999


Q ss_pred             HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904           92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM  160 (169)
Q Consensus        92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~  160 (169)
                      +.|++++.++..|+|+||.++..|+.+++++|+.+|+..        .+|..|.|||-.|+     +++++|++
T Consensus       171 e~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i--------~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  171 EQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKI--------DVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCcee--------eecCCCCchHHHHhhhcchHHHHHHhc
Confidence            999999999999999999999999999999999999987        56788999999995     99999985

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.4e-23  Score=159.20  Aligned_cols=144  Identities=20%  Similarity=0.385  Sum_probs=117.4

Q ss_pred             HHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 030904           15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG   94 (169)
Q Consensus        15 ~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g   94 (169)
                      .+.++.+++.|++++.  .+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|++.|
T Consensus       104 ~~~i~~ll~~g~d~n~--~~~~g~T~Lh~A~~~~~~~~v~~Ll~~-gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g  180 (434)
T PHA02874        104 KDMIKTILDCGIDVNI--KDAELKTFLHYAIKKGDLESIKMLFEY-GADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG  180 (434)
T ss_pred             HHHHHHHHHCcCCCCC--CCCCCccHHHHHHHCCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC
Confidence            3455566666666654  456788999999999999999999998 9999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchh-------------------hhh-----hhhcccCCCCCcccc
Q 030904           95 ASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTEC-------------------VKR-----MLETVDAEGDTDCDD  150 (169)
Q Consensus        95 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~-------------------~~~-----~~~~~~~~g~tpl~~  150 (169)
                      ++++..+..|.||||+|+..|+.+++++|++.|+++..                   +..     -++.+|..|.||||+
T Consensus       181 ~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~  260 (434)
T PHA02874        181 AYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHH  260 (434)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            99999999999999999999999999999999977520                   000     124566677777777


Q ss_pred             hh------hHHHHhhhc
Q 030904          151 QN------DLVSLFIMQ  161 (169)
Q Consensus       151 A~------~~~~~li~~  161 (169)
                      |+      +++++|+..
T Consensus       261 A~~~~~~~~iv~~Ll~~  277 (434)
T PHA02874        261 AINPPCDIDIIDILLYH  277 (434)
T ss_pred             HHhcCCcHHHHHHHHHC
Confidence            64      566777763

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.91  E-value=9.9e-24  Score=161.86  Aligned_cols=139  Identities=24%  Similarity=0.357  Sum_probs=99.3

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCC------CcHHHHHHhcCC--HH
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDG------DTALHLTCLYGY--LP   85 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g------~~~L~~a~~~~~--~~   85 (169)
                      ..++++++++.|++++...  ..|.||||+|+..|+.+++++|++. |++++..+..|      .+|||+|+..++  .+
T Consensus       155 ~~~iv~~Ll~~g~din~~d--~~g~tpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  231 (480)
T PHA03100        155 DLKILKLLIDKGVDINAKN--RYGYTPLHIAVEKGNIDVIKFLLDN-GADINAGDIETLLFTIFETPLHIAACYNEITLE  231 (480)
T ss_pred             hHHHHHHHHHCCCCccccc--CCCCCHHHHHHHhCCHHHHHHHHHc-CCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHH
Confidence            4556666666666665432  3566777777777777777777766 66666666666      677777777776  77


Q ss_pred             HHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904           86 CVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM  160 (169)
Q Consensus        86 ~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~  160 (169)
                      ++++|++.|++++.+|..|.||||+|+..|+.+++++|++.|+++       +.++..|.||++.|+     +++++|++
T Consensus       232 iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~-------n~~d~~g~tpl~~A~~~~~~~iv~~Ll~  304 (480)
T PHA03100        232 VVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANP-------NLVNKYGDTPLHIAILNNNKEIFKLLLN  304 (480)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------CccCCCCCcHHHHHHHhCCHHHHHHHHh
Confidence            777777777777777777778888887777777777777777776       677777888888774     77777777


Q ss_pred             cc
Q 030904          161 QQ  162 (169)
Q Consensus       161 ~~  162 (169)
                      .|
T Consensus       305 ~g  306 (480)
T PHA03100        305 NG  306 (480)
T ss_pred             cC
Confidence            54

>PHA03095 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.6e-23  Score=160.40  Aligned_cols=143  Identities=22%  Similarity=0.277  Sum_probs=127.3

Q ss_pred             CCCChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcC---CHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcC-CHH
Q 030904           10 EEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLG---DVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYG-YLP   85 (169)
Q Consensus        10 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g---~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~-~~~   85 (169)
                      .++.+.++++.+++.|++++..  +..|.||||+|+..+   +.++++.|++. |++++.++..|.||||+|+..+ ..+
T Consensus        22 ~~~~~~~~v~~Ll~~ga~vn~~--~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~-Gadin~~~~~g~TpLh~A~~~~~~~~   98 (471)
T PHA03095         22 ASNVTVEEVRRLLAAGADVNFR--GEYGKTPLHLYLHYSSEKVKDIVRLLLEA-GADVNAPERCGFTPLHLYLYNATTLD   98 (471)
T ss_pred             CCCCCHHHHHHHHHcCCCcccC--CCCCCCHHHHHHHhcCCChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCcHH
Confidence            3455677888999999998754  557889999999998   99999999998 9999999999999999999999 599


Q ss_pred             HHHHHHHcCCCCCccCCCCCChHHHHH--hcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-------hHHH
Q 030904           86 CVQLLLERGASLEAKDEDGAIPLHDAC--AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-------DLVS  156 (169)
Q Consensus        86 ~~~~ll~~g~~~~~~~~~~~t~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-------~~~~  156 (169)
                      ++++|+++|++++.++..|.||||+|+  ..++.+++++|+++|+++       +.+|..|.||||+|.       ++++
T Consensus        99 iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-------~~~d~~g~tpL~~a~~~~~~~~~iv~  171 (471)
T PHA03095         99 VIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-------NALDLYGMTPLAVLLKSRNANVELLR  171 (471)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-------CccCCCCCCHHHHHHHcCCCCHHHHH
Confidence            999999999999999999999999999  566889999999999998       788999999999873       7888


Q ss_pred             Hhhhcc
Q 030904          157 LFIMQQ  162 (169)
Q Consensus       157 ~li~~~  162 (169)
                      +|++.|
T Consensus       172 ~Ll~~g  177 (471)
T PHA03095        172 LLIDAG  177 (471)
T ss_pred             HHHHcC
Confidence            988864

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.91  E-value=2.5e-23  Score=143.45  Aligned_cols=137  Identities=17%  Similarity=0.199  Sum_probs=92.5

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcC--CHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhc---CCHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLG--DVHSLRLALDNLSGSIDEPV-EDGDTALHLTCLY---GYLPC   86 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g--~~~~~~~ll~~~~~~~~~~~-~~g~~~L~~a~~~---~~~~~   86 (169)
                      +....++.+++..   +  ..+..|.||||+|+..+  +.+++++|++. |++++.++ ..|.||||+|+..   ++.++
T Consensus        32 ~~~~~vk~Li~~~---n--~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~-gadvn~~~~~~g~TpLh~a~~~~~~~~~ei  105 (209)
T PHA02859         32 DDIEGVKKWIKFV---N--DCNDLYETPIFSCLEKDKVNVEILKFLIEN-GADVNFKTRDNNLSALHHYLSFNKNVEPEI  105 (209)
T ss_pred             CcHHHHHHHHHhh---h--ccCccCCCHHHHHHHcCCCCHHHHHHHHHC-CCCCCccCCCCCCCHHHHHHHhCccccHHH
Confidence            3344555555431   1  23445667777777643  67777777777 77777775 4677777776543   35677


Q ss_pred             HHHHHHcCCCCCccCCCCCChHHHHHh--cChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccc-h-----hhHHHHh
Q 030904           87 VQLLLERGASLEAKDEDGAIPLHDACA--GGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDD-Q-----NDLVSLF  158 (169)
Q Consensus        87 ~~~ll~~g~~~~~~~~~~~t~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~-A-----~~~~~~l  158 (169)
                      +++|+++|++++.+|..|.||||+|+.  .++.+++++|+++|+++       +.+|..|.||||. |     .+++++|
T Consensus       106 v~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadi-------n~~d~~g~t~Lh~~a~~~~~~~iv~~L  178 (209)
T PHA02859        106 LKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSF-------LNKDFDNNNILYSYILFHSDKKIFDFL  178 (209)
T ss_pred             HHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc-------ccccCCCCcHHHHHHHhcCCHHHHHHH
Confidence            777777777777777777788777765  35677777777777776       6777777788774 3     2677777


Q ss_pred             hhcc
Q 030904          159 IMQQ  162 (169)
Q Consensus       159 i~~~  162 (169)
                      ++.|
T Consensus       179 l~~G  182 (209)
T PHA02859        179 TSLG  182 (209)
T ss_pred             HHcC
Confidence            7643

>PHA02946 ankyin-like protein; Provisional

Probab=99.91  E-value=2.6e-23  Score=157.68  Aligned_cols=115  Identities=16%  Similarity=0.162  Sum_probs=92.7

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcC--CHHHHHH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYG--YLPCVQL   89 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~--~~~~~~~   89 (169)
                      +....+++++++.|++++..  +..|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..+  ..+++++
T Consensus        49 ~~~~~iv~~Ll~~Gadvn~~--d~~G~TpLh~Aa~~g~~eiv~lLL~~-GAdin~~d~~g~TpLh~A~~~~~~~~e~v~l  125 (446)
T PHA02946         49 GLDERFVEELLHRGYSPNET--DDDGNYPLHIASKINNNRIVAMLLTH-GADPNACDKQHKTPLYYLSGTDDEVIERINL  125 (446)
T ss_pred             CCCHHHHHHHHHCcCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCchHHHHHH
Confidence            34567899999999998754  56788999999999999999999998 9999999999999999988765  4678888


Q ss_pred             HHHcCCCCCc-cCCCCCChHHHHHhcChHHHHHHHHhcCCCc
Q 030904           90 LLERGASLEA-KDEDGAIPLHDACAGGFIEIVQLLINSASGT  130 (169)
Q Consensus        90 ll~~g~~~~~-~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~  130 (169)
                      |+++|++++. .+..|.|||| |+..++.+++++|++.|+++
T Consensus       126 Ll~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~  166 (446)
T PHA02946        126 LVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEA  166 (446)
T ss_pred             HHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccc
Confidence            9988888874 5667777776 44456666666666666554

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.91  E-value=3.2e-23  Score=157.32  Aligned_cols=142  Identities=22%  Similarity=0.371  Sum_probs=113.1

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHh----------------------CCCCCcccCC
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDN----------------------LSGSIDEPVE   69 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~----------------------~~~~~~~~~~   69 (169)
                      .+..+++++|++.|++++..  +..+.+|||.|+..|+.+++++|++.                      .|++++.++.
T Consensus        45 ~g~~~iv~~Ll~~Ga~~n~~--~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~  122 (434)
T PHA02874         45 SGDAKIVELFIKHGADINHI--NTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDA  122 (434)
T ss_pred             cCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCC
Confidence            45556777888888877643  44567888888888888888888765                      1344566777


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCccc
Q 030904           70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCD  149 (169)
Q Consensus        70 ~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~  149 (169)
                      .|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.+++++|++.|+++       +.++..|.||||
T Consensus       123 ~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~-------n~~~~~g~tpL~  195 (434)
T PHA02874        123 ELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA-------NVKDNNGESPLH  195 (434)
T ss_pred             CCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-------CCCCCCCCCHHH
Confidence            8888888888888888888888888888888888888888888888888888888888887       677888888888


Q ss_pred             chh-----hHHHHhhhcc
Q 030904          150 DQN-----DLVSLFIMQQ  162 (169)
Q Consensus       150 ~A~-----~~~~~li~~~  162 (169)
                      +|+     +++++|++.+
T Consensus       196 ~A~~~g~~~iv~~Ll~~g  213 (434)
T PHA02874        196 NAAEYGDYACIKLLIDHG  213 (434)
T ss_pred             HHHHcCCHHHHHHHHhCC
Confidence            885     8888888754

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.91  E-value=2.1e-23  Score=164.20  Aligned_cols=127  Identities=19%  Similarity=0.218  Sum_probs=80.3

Q ss_pred             HHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCC--HHHHHHHHHhCCCCCcccCCCCCcHHHHH--------------
Q 030904           15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGD--VHSLRLALDNLSGSIDEPVEDGDTALHLT--------------   78 (169)
Q Consensus        15 ~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~--~~~~~~ll~~~~~~~~~~~~~g~~~L~~a--------------   78 (169)
                      .+++++|++.|++++..  +..|.||||+|+..|+  .+++++|++. |++++.++..|+||||+|              
T Consensus       192 ~eIVklLLe~GADVN~k--D~~G~TPLH~Aa~~g~~~~eIVklLLe~-GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvki  268 (764)
T PHA02716        192 IDILEWLCNNGVNVNLQ--NNHLITPLHTYLITGNVCASVIKKIIEL-GGDMDMKCVNGMSPIMTYIINIDNINPEITNI  268 (764)
T ss_pred             HHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhhhccCHHHHHH
Confidence            35666666666666543  3456667777776664  3666666666 666666666677776653              


Q ss_pred             -----------------------HhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHh--cChHHHHHHHHhcCCCchhh
Q 030904           79 -----------------------CLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACA--GGFIEIVQLLINSASGTECV  133 (169)
Q Consensus        79 -----------------------~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~--~~~~~~~~~ll~~~~~~~~~  133 (169)
                                             +..++.+++++|++.|++++.+|..|+||||+|+.  .++.+++++|++.|+++   
T Consensus       269 Lie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI---  345 (764)
T PHA02716        269 YIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL---  345 (764)
T ss_pred             HHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC---
Confidence                                   22345566666666677666666667777776543  34566677777776665   


Q ss_pred             hhhhhcccCCCCCcccch
Q 030904          134 KRMLETVDAEGDTDCDDQ  151 (169)
Q Consensus       134 ~~~~~~~~~~g~tpl~~A  151 (169)
                          +.+|..|+||||+|
T Consensus       346 ----N~kD~~G~TPLH~A  359 (764)
T PHA02716        346 ----NEPDNIGNTVLHTY  359 (764)
T ss_pred             ----ccCCCCCCCHHHHH
Confidence                56667777777754

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.91  E-value=4.9e-23  Score=141.97  Aligned_cols=131  Identities=21%  Similarity=0.232  Sum_probs=115.7

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHc---CCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHh--cCCHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQL---GDVHSLRLALDNLSGSIDEPVEDGDTALHLTCL--YGYLPCV   87 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~--~~~~~~~   87 (169)
                      ...++++++++.|++++... ...|.||||+|+..   ++.+++++|++. |++++.++..|.||||+|+.  .++.+++
T Consensus        64 ~~~eiv~~Ll~~gadvn~~~-~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~-gadin~~d~~G~TpLh~a~~~~~~~~~iv  141 (209)
T PHA02859         64 VNVEILKFLIENGADVNFKT-RDNNLSALHHYLSFNKNVEPEILKILIDS-GSSITEEDEDGKNLLHMYMCNFNVRINVI  141 (209)
T ss_pred             CCHHHHHHHHHCCCCCCccC-CCCCCCHHHHHHHhCccccHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhccCCHHHH
Confidence            36789999999999997532 34678999998764   479999999988 99999999999999999876  4689999


Q ss_pred             HHHHHcCCCCCccCCCCCChHHH-HHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh
Q 030904           88 QLLLERGASLEAKDEDGAIPLHD-ACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN  152 (169)
Q Consensus        88 ~~ll~~g~~~~~~~~~~~t~l~~-a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~  152 (169)
                      ++|++.|++++.+|..|.||||. ++..++.+++++|++.|+++       +.+|..|.||+++|.
T Consensus       142 ~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi-------~~~d~~g~tpl~la~  200 (209)
T PHA02859        142 KLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDI-------NETNKSGYNCYDLIK  200 (209)
T ss_pred             HHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCC-------CCCCCCCCCHHHHHh
Confidence            99999999999999999999995 56788999999999999998       799999999999985

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.90  E-value=5.1e-23  Score=162.11  Aligned_cols=143  Identities=17%  Similarity=0.143  Sum_probs=122.6

Q ss_pred             CCChHHHHHHHHhcC-CCCcccCCCcchhHHHHHHHH--cCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC--HH
Q 030904           11 EDDSEEDNALFEEDG-VNMDLESETPPHLRDLAAAAQ--LGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGY--LP   85 (169)
Q Consensus        11 ~~~~~~~~~~l~~~g-~~~~~~~~~~~~~t~l~~a~~--~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~--~~   85 (169)
                      .+...+++++|++.| ++++.. .+..|.||||+|+.  .++.+++++|++. |++++.++..|.||||+|+..++  .+
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~-~d~~G~TpLH~A~~n~~~~~eIVklLLe~-GADVN~kD~~G~TPLH~Aa~~g~~~~e  228 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYV-CKKTGYGILHAYLGNMYVDIDILEWLCNN-GVNVNLQNNHLITPLHTYLITGNVCAS  228 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccc-cCCCCCcHHHHHHHhccCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCCCHH
Confidence            356778999999999 887653 14578899998764  3678999999998 99999999999999999999985  48


Q ss_pred             HHHHHHHcCCCCCccCCCCCChHHHH-------------------------------------HhcChHHHHHHHHhcCC
Q 030904           86 CVQLLLERGASLEAKDEDGAIPLHDA-------------------------------------CAGGFIEIVQLLINSAS  128 (169)
Q Consensus        86 ~~~~ll~~g~~~~~~~~~~~t~l~~a-------------------------------------~~~~~~~~~~~ll~~~~  128 (169)
                      ++++|++.|++++.++..|.||||.|                                     ++.|+.+++++|++.|+
T Consensus       229 IVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GA  308 (764)
T PHA02716        229 VIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGV  308 (764)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCC
Confidence            99999999999999999999999975                                     34567788899999998


Q ss_pred             CchhhhhhhhcccCCCCCcccchh-------hHHHHhhhcc
Q 030904          129 GTECVKRMLETVDAEGDTDCDDQN-------DLVSLFIMQQ  162 (169)
Q Consensus       129 ~~~~~~~~~~~~~~~g~tpl~~A~-------~~~~~li~~~  162 (169)
                      ++       +.+|..|+||||+|+       +++++|++.|
T Consensus       309 dI-------N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~G  342 (764)
T PHA02716        309 KL-------HYKDSAGRTCLHQYILRHNISTDIIKLLHEYG  342 (764)
T ss_pred             ce-------eccCCCCCCHHHHHHHHhCCCchHHHHHHHcC
Confidence            87       789999999999863       7999999854

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=5.5e-23  Score=137.41  Aligned_cols=122  Identities=13%  Similarity=0.150  Sum_probs=108.1

Q ss_pred             CCcchhHHHHHHHHcCCHHHHHHHHHh-----CCCCCcccCCCCCcHHHHHHhcCC----HHHHHHHHHcCCCCCccCC-
Q 030904           33 ETPPHLRDLAAAAQLGDVHSLRLALDN-----LSGSIDEPVEDGDTALHLTCLYGY----LPCVQLLLERGASLEAKDE-  102 (169)
Q Consensus        33 ~~~~~~t~l~~a~~~g~~~~~~~ll~~-----~~~~~~~~~~~g~~~L~~a~~~~~----~~~~~~ll~~g~~~~~~~~-  102 (169)
                      .+..|.|+||+|+..|+.++++.|+..     .+++++.+|..|.||||+|+..++    .+++++|++.|++++.++. 
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~   96 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEML   96 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcC
Confidence            355788999999999999999998642     257788999999999999999998    5789999999999999885 


Q ss_pred             CCCChHHHHHhcChHHHHHHHHh-cCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904          103 DGAIPLHDACAGGFIEIVQLLIN-SASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus       103 ~~~t~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      .|.||||+|+..++.+++++|++ .|+++       +.+|..|+||||.|.     +++++|++.
T Consensus        97 ~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-------~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         97 EGDTALHLAAHRRDHDLAEWLCCQPGIDL-------HFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCC-------CcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence            89999999999999999999997 58887       788999999999994     888888874

>PHA02795 ankyrin-like protein; Provisional

Probab=99.90  E-value=7.7e-23  Score=152.04  Aligned_cols=139  Identities=14%  Similarity=0.080  Sum_probs=122.1

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCC-ccc-----CCCCCcHHHHHHhcCCHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSI-DEP-----VEDGDTALHLTCLYGYLPC   86 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~-~~~-----~~~g~~~L~~a~~~~~~~~   86 (169)
                      ....++++|+.+|++++..    .+.||+|.|+..++.+++++|+.. |++. +..     +..+.+++|.+...++.++
T Consensus       129 n~~eiV~~LI~~GADIn~~----~~~t~lh~A~~~~~~eIVk~Lls~-Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eI  203 (437)
T PHA02795        129 VEIDIVDFMVDHGAVIYKI----ECLNAYFRGICKKESSVVEFILNC-GIPDENDVKLDLYKIIQYTRGFLVDEPTVLEI  203 (437)
T ss_pred             CCHHHHHHHHHCCCCCCCC----CCCCHHHHHHHcCcHHHHHHHHhc-CCcccccccchhhhhhccchhHHHHhcCHHHH
Confidence            5667999999999999752    336899999999999999999998 7632 222     1347889999999999999


Q ss_pred             HHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-------------h
Q 030904           87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-------------D  153 (169)
Q Consensus        87 ~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-------------~  153 (169)
                      +++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++       +.++..|.||||.|+             +
T Consensus       204 ve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdI-------N~~d~~G~TpLh~Aa~~g~~~~~~~~~~e  276 (437)
T PHA02795        204 YKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANV-------NAVMSNGYTCLDVAVDRGSVIARRETHLK  276 (437)
T ss_pred             HHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------CCcCCCCCCHHHHHHHcCCcccccccHHH
Confidence            99999999999999999999999999999999999999999998       899999999999994             5


Q ss_pred             HHHHhhhccc
Q 030904          154 LVSLFIMQQE  163 (169)
Q Consensus       154 ~~~~li~~~~  163 (169)
                      ++++|++++.
T Consensus       277 IvelLL~~ga  286 (437)
T PHA02795        277 ILEILLREPL  286 (437)
T ss_pred             HHHHHHhCCC
Confidence            8999998643

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.90  E-value=8.6e-23  Score=156.69  Aligned_cols=142  Identities=19%  Similarity=0.254  Sum_probs=130.2

Q ss_pred             CCChHHHHHHHHhcCCCCcccCCCcchhHHHHH-----HHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHH--hcCC
Q 030904           11 EDDSEEDNALFEEDGVNMDLESETPPHLRDLAA-----AAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTC--LYGY   83 (169)
Q Consensus        11 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~-----a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~--~~~~   83 (169)
                      .....++++.+++.|++++..  +..+.||||+     |+..++.++++.|++. |++++..+..|.||||+|+  ..++
T Consensus        44 ~~~~~~ivk~Ll~~g~~~~~~--~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~-ga~i~~~d~~g~tpL~~A~~~~~~~  120 (480)
T PHA03100         44 EARNIDVVKILLDNGADINSS--TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY-GANVNAPDNNGITPLLYAISKKSNS  120 (480)
T ss_pred             ccCCHHHHHHHHHcCCCCCCc--cccCcCHHHHHHHHHHHhhchHHHHHHHHHC-CCCCCCCCCCCCchhhHHHhcccCh
Confidence            456678899999999998754  4467799999     9999999999999998 9999999999999999999  9999


Q ss_pred             HHHHHHHHHcCCCCCccCCCCCChHHHHHhcC--hHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHH
Q 030904           84 LPCVQLLLERGASLEAKDEDGAIPLHDACAGG--FIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVS  156 (169)
Q Consensus        84 ~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~  156 (169)
                      .+++++|++.|++++..+..|.||||.|+..+  +.+++++|+++|+++       +.++..|.||||+|+     ++++
T Consensus       121 ~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-------n~~d~~g~tpL~~A~~~~~~~iv~  193 (480)
T PHA03100        121 YSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-------NAKNRYGYTPLHIAVEKGNIDVIK  193 (480)
T ss_pred             HHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-------ccccCCCCCHHHHHHHhCCHHHHH
Confidence            99999999999999999999999999999999  999999999999998       788899999999995     8999


Q ss_pred             Hhhhcc
Q 030904          157 LFIMQQ  162 (169)
Q Consensus       157 ~li~~~  162 (169)
                      +|++.|
T Consensus       194 ~Ll~~g  199 (480)
T PHA03100        194 FLLDNG  199 (480)
T ss_pred             HHHHcC
Confidence            999854

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=7.1e-23  Score=136.42  Aligned_cols=121  Identities=13%  Similarity=0.221  Sum_probs=103.1

Q ss_pred             CcchhHHHHHHHHcCCH----HHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHH---HHHHHHcCCCCCccC-CCCC
Q 030904           34 TPPHLRDLAAAAQLGDV----HSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPC---VQLLLERGASLEAKD-EDGA  105 (169)
Q Consensus        34 ~~~~~t~l~~a~~~g~~----~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~---~~~ll~~g~~~~~~~-~~~~  105 (169)
                      ...+.+++|.||..|+.    +++++|++. +..++.+|..|+||||+|+..++.+.   +++|++.|++++.++ ..|.
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~-g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~   95 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGD-GHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGN   95 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhc-chhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            34555789999999998    445555655 88888889999999999999987654   789999999999998 5899


Q ss_pred             ChHHHHHhcChHHHHHHHHh-cCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          106 IPLHDACAGGFIEIVQLLIN-SASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       106 t~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      ||||+|+..++.+++++|++ .|+++       +.++..|.||||+|+     +++++|++.+
T Consensus        96 TpLh~A~~~g~~~iv~~Ll~~~gad~-------~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g  151 (166)
T PHA02743         96 TLLHIAASTKNYELAEWLCRQLGVNL-------GAINYQHETAYHIAYKMRDRRMMEILRANG  151 (166)
T ss_pred             cHHHHHHHhCCHHHHHHHHhccCCCc-------cCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            99999999999999999995 79887       788999999999995     8899999843

>PHA03095 ankyrin-like protein; Provisional

Probab=99.89  E-value=2.8e-22  Score=153.53  Aligned_cols=139  Identities=19%  Similarity=0.124  Sum_probs=120.1

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHc--CCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCH--HHHHH
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQL--GDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYL--PCVQL   89 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~--g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~--~~~~~   89 (169)
                      ...+++++++.|++++..  +..|.||||+++..  ++.++++.|++. |++++.++..|.||||+|+..++.  .++..
T Consensus       166 ~~~iv~~Ll~~g~~~~~~--d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~-g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~  242 (471)
T PHA03095        166 NVELLRLLIDAGADVYAV--DDRFRSLLHHHLQSFKPRARIVRELIRA-GCDPAATDMLGNTPLHSMATGSSCKRSLVLP  242 (471)
T ss_pred             CHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHHCCCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcCCchHHHHHH
Confidence            456778888888877654  56778889988864  678888888888 899999999999999999998864  57888


Q ss_pred             HHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904           90 LLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus        90 ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      ++..|++++.+|..|.||||+|+..|+.+++++|++.|+++       +.++..|.||||.|+     +++++|+..+
T Consensus       243 ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~-------n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~  313 (471)
T PHA03095        243 LLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADI-------NAVSSDGNTPLSLMVRNNNGRAVRAALAKN  313 (471)
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------cccCCCCCCHHHHHHHhCCHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999998       799999999999995     8888888754

>PHA02798 ankyrin-like protein; Provisional

Probab=99.89  E-value=3.1e-22  Score=153.93  Aligned_cols=113  Identities=23%  Similarity=0.283  Sum_probs=59.0

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHc-----CCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcC---CHH
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQL-----GDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYG---YLP   85 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~-----g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~---~~~   85 (169)
                      ..+++++|++.|++++..  +..|.||||.++..     +..+++++|++. |+++|.++..|.||||+|+..+   +.+
T Consensus        50 ~~~iv~~Ll~~Gadvn~~--d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~-GadiN~~d~~G~TpLh~a~~~~~~~~~~  126 (489)
T PHA02798         50 STDIVKLFINLGANVNGL--DNEYSTPLCTILSNIKDYKHMLDIVKILIEN-GADINKKNSDGETPLYCLLSNGYINNLE  126 (489)
T ss_pred             CHHHHHHHHHCCCCCCCC--CCCCCChHHHHHHhHHhHHhHHHHHHHHHHC-CCCCCCCCCCcCcHHHHHHHcCCcChHH
Confidence            445555555555555432  23444555554432     345555555554 5555555555555555555443   345


Q ss_pred             HHHHHHHcCCCCCccCCCCCChHHHHHhcCh---HHHHHHHHhcCCC
Q 030904           86 CVQLLLERGASLEAKDEDGAIPLHDACAGGF---IEIVQLLINSASG  129 (169)
Q Consensus        86 ~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~---~~~~~~ll~~~~~  129 (169)
                      ++++|++.|++++.+|..|.||||+|++.++   .+++++|++.|++
T Consensus       127 iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gad  173 (489)
T PHA02798        127 ILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVD  173 (489)
T ss_pred             HHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCC
Confidence            5555555555555555555555555555544   4555555555443

>PHA02798 ankyrin-like protein; Provisional

Probab=99.89  E-value=3.1e-22  Score=153.90  Aligned_cols=139  Identities=17%  Similarity=0.223  Sum_probs=104.7

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHH--HcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhc-----CCH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAA--QLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLY-----GYL   84 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~--~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~-----~~~   84 (169)
                      ....+.++++++.+...+.    ..+.|+++.+.  ..++.+++++|++. |++++.++..|.||||.++..     +..
T Consensus        15 ~~~~~~v~~ll~~~~~~~~----~~~~~~~~~yl~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpL~~~~~n~~~~~~~~   89 (489)
T PHA02798         15 NVKLSTVKLLIKSCNPNEI----VNEYSIFQKYLQRDSPSTDIVKLFINL-GANVNGLDNEYSTPLCTILSNIKDYKHML   89 (489)
T ss_pred             cccHHHHHHHHhcCChhhh----cccchHHHHHHhCCCCCHHHHHHHHHC-CCCCCCCCCCCCChHHHHHHhHHhHHhHH
Confidence            3455577777765432222    23445555333  34578889999887 889988888899999887653     557


Q ss_pred             HHHHHHHHcCCCCCccCCCCCChHHHHHhcC---hHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh--------h
Q 030904           85 PCVQLLLERGASLEAKDEDGAIPLHDACAGG---FIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN--------D  153 (169)
Q Consensus        85 ~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~--------~  153 (169)
                      +++++|++.|++++.+|..|.||||+|+..+   +.+++++|+++|+++       +.+|..|.||||+|+        +
T Consensus        90 ~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-------n~~d~~g~tpL~~a~~~~~~~~~~  162 (489)
T PHA02798         90 DIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-------TLLDKDGFTMLQVYLQSNHHIDIE  162 (489)
T ss_pred             HHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-------cccCCCCCcHHHHHHHcCCcchHH
Confidence            8899999999999998888999999998875   678889999999887       788888999998763        6


Q ss_pred             HHHHhhhcc
Q 030904          154 LVSLFIMQQ  162 (169)
Q Consensus       154 ~~~~li~~~  162 (169)
                      ++++|++.|
T Consensus       163 vv~~Ll~~g  171 (489)
T PHA02798        163 IIKLLLEKG  171 (489)
T ss_pred             HHHHHHHhC
Confidence            788888853

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.89  E-value=4.3e-22  Score=153.31  Aligned_cols=146  Identities=16%  Similarity=0.167  Sum_probs=108.3

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHc---CCHHHHHHHHHhCCCCC-cccCCCCCcHHHHHHhc--CCHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQL---GDVHSLRLALDNLSGSI-DEPVEDGDTALHLTCLY--GYLPC   86 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~~-~~~~~~g~~~L~~a~~~--~~~~~   86 (169)
                      ...+++++|++.|++++..  +..|.||||.|+..   ++.+++++|++. |+++ +.++..|.||||+|+..  ++.++
T Consensus        86 ~~~~iv~~Ll~~Gadin~~--d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~-Gadin~~~d~~g~tpLh~a~~~~~~~~~i  162 (494)
T PHA02989         86 KIKKIVKLLLKFGADINLK--TFNGVSPIVCFIYNSNINNCDMLRFLLSK-GINVNDVKNSRGYNLLHMYLESFSVKKDV  162 (494)
T ss_pred             hHHHHHHHHHHCCCCCCCC--CCCCCcHHHHHHHhcccCcHHHHHHHHHC-CCCcccccCCCCCCHHHHHHHhccCCHHH
Confidence            3456788888888887754  44677888877654   568888888887 8888 77888888888887653  57788


Q ss_pred             HHHHHHcCCCCCc-cCCCCCChHHHHHhcC----hHHHHHHHHhcCCCchhhhh----------------------h---
Q 030904           87 VQLLLERGASLEA-KDEDGAIPLHDACAGG----FIEIVQLLINSASGTECVKR----------------------M---  136 (169)
Q Consensus        87 ~~~ll~~g~~~~~-~~~~~~t~l~~a~~~~----~~~~~~~ll~~~~~~~~~~~----------------------~---  136 (169)
                      +++|+++|++++. .+..|.||||.|++.+    +.+++++|++.|++++....                      +   
T Consensus       163 v~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~  242 (494)
T PHA02989        163 IKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNF  242 (494)
T ss_pred             HHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHH
Confidence            8888888888877 5677888888876654    77888888888877642110                      0   


Q ss_pred             ------hhcccCCCCCcccchh-----hHHHHhhhc
Q 030904          137 ------LETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus       137 ------~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                            ++.+|..|.||||+|+     +++++|++.
T Consensus       243 l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~  278 (494)
T PHA02989        243 ILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKL  278 (494)
T ss_pred             HHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHc
Confidence                  2566777888888885     778888874

>PHA02946 ankyin-like protein; Provisional

Probab=99.88  E-value=6.6e-22  Score=150.06  Aligned_cols=106  Identities=16%  Similarity=0.241  Sum_probs=54.1

Q ss_pred             CCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcC--CHHHHHHHHHcCCCCCccCCCCCChHHHHHhcC--hHHHHHHH
Q 030904           48 GDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYG--YLPCVQLLLERGASLEAKDEDGAIPLHDACAGG--FIEIVQLL  123 (169)
Q Consensus        48 g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~--~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~--~~~~~~~l  123 (169)
                      |+.++++.|++. |++++.+|..|+||||+|+..+  +.+++++|++.|++++.+|..|.||||+|+..+  +.+++++|
T Consensus       151 ~~~~vv~~Ll~~-gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lL  229 (446)
T PHA02946        151 PSERVFKKIMSI-GFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLL  229 (446)
T ss_pred             CChHHHHHHHhc-cccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHH
Confidence            333444444433 4444444445555555544432  234555555555555555555556666655543  45555555


Q ss_pred             HhcCCCchhhhhhhhcccCCCCCcccchh------hHHHHhhhcc
Q 030904          124 INSASGTECVKRMLETVDAEGDTDCDDQN------DLVSLFIMQQ  162 (169)
Q Consensus       124 l~~~~~~~~~~~~~~~~~~~g~tpl~~A~------~~~~~li~~~  162 (169)
                      ++ |+++       +.+|..|.||||+|+      +++++|++.+
T Consensus       230 l~-gadi-------n~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g  266 (446)
T PHA02946        230 LP-STDV-------NKQNKFGDSPLTLLIKTLSPAHLINKLLSTS  266 (446)
T ss_pred             Hc-CCCC-------CCCCCCCCCHHHHHHHhCChHHHHHHHHhCC
Confidence            53 4444       555666666666553      3445555543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.88  E-value=6.1e-22  Score=160.09  Aligned_cols=138  Identities=16%  Similarity=0.133  Sum_probs=118.2

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      +....++.+++.|++++.  .+..|.||||+|+..|+.++++.|++. |++++.+|..|.||||+|+..|+.+++++|+.
T Consensus       536 g~~~~l~~Ll~~G~d~n~--~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~  612 (823)
T PLN03192        536 GNAALLEELLKAKLDPDI--GDSKGRTPLHIAASKGYEDCVLVLLKH-ACNVHIRDANGNTALWNAISAKHHKIFRILYH  612 (823)
T ss_pred             CCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHcChHHHHHHHHhc-CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHh
Confidence            455677888888888875  456788999999999999999999987 89999999999999999999999999999988


Q ss_pred             cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904           93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus        93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      .++..+.  ..+.++||.|+..|+.++++.|+++|+++       +.+|.+|+||||+|+     +++++|++.|
T Consensus       613 ~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi-------n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G  678 (823)
T PLN03192        613 FASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNV-------DSEDHQGATALQVAMAEDHVDMVRLLIMNG  678 (823)
T ss_pred             cCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHHCCcHHHHHHHHHcC
Confidence            7765443  34668999999999999999999999998       789999999999995     8999999854

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.88  E-value=8.5e-22  Score=151.66  Aligned_cols=139  Identities=17%  Similarity=0.203  Sum_probs=118.4

Q ss_pred             hHHHHHHHHhcCCCC-cccCCCcchhHHHHHHHHc--CCHHHHHHHHHhCCCCCcc-cCCCCCcHHHHHHhcC----CHH
Q 030904           14 SEEDNALFEEDGVNM-DLESETPPHLRDLAAAAQL--GDVHSLRLALDNLSGSIDE-PVEDGDTALHLTCLYG----YLP   85 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~-~~~~~~~~~~t~l~~a~~~--g~~~~~~~ll~~~~~~~~~-~~~~g~~~L~~a~~~~----~~~   85 (169)
                      ..+++++|++.|+++ +.  .+..|.||||+|+..  ++.++++.|++. |++++. .+..|.||||+++..+    +.+
T Consensus       123 ~~eiv~~Ll~~Gadin~~--~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~-Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~  199 (494)
T PHA02989        123 NCDMLRFLLSKGINVNDV--KNSRGYNLLHMYLESFSVKKDVIKILLSF-GVNLFEKTSLYGLTPMNIYLRNDIDVISIK  199 (494)
T ss_pred             cHHHHHHHHHCCCCcccc--cCCCCCCHHHHHHHhccCCHHHHHHHHHc-CCCccccccccCCChHHHHHhcccccccHH
Confidence            467889999999998 44  456788999998754  588999999988 999887 5788999999987654    788


Q ss_pred             HHHHHHHcCCCCCc--------------------------------------cCCCCCChHHHHHhcChHHHHHHHHhcC
Q 030904           86 CVQLLLERGASLEA--------------------------------------KDEDGAIPLHDACAGGFIEIVQLLINSA  127 (169)
Q Consensus        86 ~~~~ll~~g~~~~~--------------------------------------~~~~~~t~l~~a~~~~~~~~~~~ll~~~  127 (169)
                      ++++|++.|++++.                                      +|..|.||||+|+..|+.+++++|++.|
T Consensus       200 iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~G  279 (494)
T PHA02989        200 VIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLG  279 (494)
T ss_pred             HHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcC
Confidence            99999988876553                                      4556999999999999999999999999


Q ss_pred             CCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          128 SGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       128 ~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      +++       +.+|..|.||||+|+     ++++.|++.+
T Consensus       280 adi-------n~~d~~G~TpL~~A~~~~~~~iv~~LL~~~  312 (494)
T PHA02989        280 DDI-------YNVSKDGDTVLTYAIKHGNIDMLNRILQLK  312 (494)
T ss_pred             CCc-------cccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            998       899999999999995     8889988854

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.88  E-value=7.6e-22  Score=127.33  Aligned_cols=113  Identities=27%  Similarity=0.299  Sum_probs=104.1

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHH
Q 030904           41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIV  120 (169)
Q Consensus        41 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~  120 (169)
                      +.+|+..+....|+.||+...-.+|.+|.+|+||||.|++.++.++++.|+.+|++.+++...|+||||.||.-.+.+++
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va  146 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVA  146 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHH
Confidence            78999999999999999985556999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCchhhhhhhhcccCCCCCcccchh------hHHHHhhh
Q 030904          121 QLLINSASGTECVKRMLETVDAEGDTDCDDQN------DLVSLFIM  160 (169)
Q Consensus       121 ~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~------~~~~~li~  160 (169)
                      .+|+++|+++       |.+..-..||||+|+      ..+.+|+.
T Consensus       147 ~~LLqhgaDV-------nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~  185 (228)
T KOG0512|consen  147 GRLLQHGADV-------NAQTKGLLTPLHLAAGNRNSRDTLELLLH  185 (228)
T ss_pred             HHHHhccCcc-------cccccccchhhHHhhcccchHHHHHHHhh
Confidence            9999999998       788888899999995      56666666

>PHA02730 ankyrin-like protein; Provisional

Probab=99.87  E-value=1.4e-21  Score=151.69  Aligned_cols=140  Identities=16%  Similarity=0.172  Sum_probs=120.9

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCC----HHHHHHHHHhCCC--CCcccCCCCCcHHHH---HHhcC-
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGD----VHSLRLALDNLSG--SIDEPVEDGDTALHL---TCLYG-   82 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~----~~~~~~ll~~~~~--~~~~~~~~g~~~L~~---a~~~~-   82 (169)
                      ...+++++|+++|++++..   ..|.||||+|+..++    .+++++|+.+ |+  +++.++..|.||||.   +...+ 
T Consensus       357 v~ieIvelLIs~GAdIN~k---~~G~TpLH~Aa~~nnn~i~~eIvelLIs~-Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~  432 (672)
T PHA02730        357 VSIPILRCMLDNGATMDKT---TDNNYPLHDYFVNNNNIVDVNVVRFIVEN-NGHMAINHVSNNGRLCMYGLILSRFNNC  432 (672)
T ss_pred             CcHHHHHHHHHCCCCCCcC---CCCCcHHHHHHHHcCCcchHHHHHHHHHc-CCCccccccccCCCchHhHHHHHHhccc
Confidence            4678999999999999852   578899999998875    8999999998 65  688889999999984   33222 


Q ss_pred             --------CHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccC-CCCCcccchh-
Q 030904           83 --------YLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDA-EGDTDCDDQN-  152 (169)
Q Consensus        83 --------~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~-~g~tpl~~A~-  152 (169)
                              ..+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+++       +.++. .|.||+|.|+ 
T Consensus       433 ~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdI-------N~~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        433 GYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASV-------NTTSRSIINTAIQKSSY  505 (672)
T ss_pred             cccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCC-------CCCCCcCCcCHHHHHHH
Confidence                    235699999999999999999999999999999999999999999998       78886 5999999985 


Q ss_pred             ------hHHHHhhhccc
Q 030904          153 ------DLVSLFIMQQE  163 (169)
Q Consensus       153 ------~~~~~li~~~~  163 (169)
                            +++++|++.+.
T Consensus       506 ~~~~~~eIv~~LLs~ga  522 (672)
T PHA02730        506 RRENKTKLVDLLLSYHP  522 (672)
T ss_pred             hhcCcHHHHHHHHHcCC
Confidence                  49999998764

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.87  E-value=2.5e-21  Score=154.15  Aligned_cols=137  Identities=20%  Similarity=0.288  Sum_probs=83.4

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC-HHHHHHHHH
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGY-LPCVQLLLE   92 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~-~~~~~~ll~   92 (169)
                      ...++.++++.|++++..  +..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+..+. ..++++|++
T Consensus       354 ~~~iv~lLl~~gadin~~--d~~G~TpLh~Aa~~~~~~iv~~Ll~~-gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~  430 (682)
T PHA02876        354 NKDIVITLLELGANVNAR--DYCDKTPIHYAAVRNNVVIINTLLDY-GADIEALSQKIGTALHFALCGTNPYMSVKTLID  430 (682)
T ss_pred             cHHHHHHHHHcCCCCccC--CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCccccCCCCCchHHHHHHcCCHHHHHHHHHh
Confidence            344555556666655533  33555666666666666666666665 66666666666666666655443 345666666


Q ss_pred             cCCCCCccCCCCCChHHHHHhcC-hHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh---hHHHHhhh
Q 030904           93 RGASLEAKDEDGAIPLHDACAGG-FIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN---DLVSLFIM  160 (169)
Q Consensus        93 ~g~~~~~~~~~~~t~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~---~~~~~li~  160 (169)
                      .|++++.+|..|+||||+|+..+ +.+++++|++.|+++       +.+|..|.||++.|+   .+++.|+.
T Consensus       431 ~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~-------n~~d~~g~tpl~~a~~~~~~v~~Ll~  495 (682)
T PHA02876        431 RGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADV-------NAINIQNQYPLLIALEYHGIVNILLH  495 (682)
T ss_pred             CCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHHhCCHHHHHHH
Confidence            66666666666666666666654 456666666666665       566666666666664   44555544

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=6.7e-22  Score=144.75  Aligned_cols=144  Identities=24%  Similarity=0.380  Sum_probs=128.1

Q ss_pred             CCChHHHHHHHHh-cCCC------CcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC
Q 030904           11 EDDSEEDNALFEE-DGVN------MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGY   83 (169)
Q Consensus        11 ~~~~~~~~~~l~~-~g~~------~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~   83 (169)
                      +.+..++++++++ -+++      +.+....-.|..||-.|+..|++++++.|+.. |+.+|.......|||-.||.-|+
T Consensus        51 RnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~-ga~VN~tT~TNStPLraACfDG~  129 (615)
T KOG0508|consen   51 RNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRR-GASVNDTTRTNSTPLRAACFDGH  129 (615)
T ss_pred             hcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHh-cCccccccccCCccHHHHHhcch
Confidence            4455677888876 3444      44566677888888888889999999999998 89999888888899999999999


Q ss_pred             HHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHh
Q 030904           84 LPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLF  158 (169)
Q Consensus        84 ~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~l  158 (169)
                      .+++++|+++|+|+++.|+.|.|+|++||..|+.+++++|++.|+++       |.++.+|+|+||.++     +++++|
T Consensus       130 leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADv-------n~ks~kGNTALH~caEsG~vdivq~L  202 (615)
T KOG0508|consen  130 LEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADV-------NAKSYKGNTALHDCAESGSVDIVQLL  202 (615)
T ss_pred             hHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCc-------chhcccCchHHHhhhhcccHHHHHHH
Confidence            99999999999999999999999999999999999999999999998       899999999999885     999999


Q ss_pred             hhcc
Q 030904          159 IMQQ  162 (169)
Q Consensus       159 i~~~  162 (169)
                      +..+
T Consensus       203 l~~g  206 (615)
T KOG0508|consen  203 LKHG  206 (615)
T ss_pred             HhCC
Confidence            9854

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.87  E-value=4.9e-21  Score=152.50  Aligned_cols=146  Identities=19%  Similarity=0.208  Sum_probs=95.4

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcC-CHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhc-CCHHHHHHHH
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLG-DVHSLRLALDNLSGSIDEPVEDGDTALHLTCLY-GYLPCVQLLL   91 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g-~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~-~~~~~~~~ll   91 (169)
                      ...+++++++.|++++..  +..|.||||+|+..| ..+.++.|+.. |++++..+..|.||||+|+.. +..+++.+|+
T Consensus       286 ~~~iv~lLl~~gadin~~--d~~g~TpLh~Aa~~g~~~~~v~~Ll~~-gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl  362 (682)
T PHA02876        286 LSRLVPKLLERGADVNAK--NIKGETPLYLMAKNGYDTENIRTLIML-GADVNAADRLYITPLHQASTLDRNKDIVITLL  362 (682)
T ss_pred             HHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHhCCCHHHHHHHHHc-CCCCCCcccCCCcHHHHHHHhCCcHHHHHHHH
Confidence            345677777777766543  345667777777766 46666666665 666666666666666666654 3455666666


Q ss_pred             HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchh---------------------hhhh------hhcccCCC
Q 030904           92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTEC---------------------VKRM------LETVDAEG  144 (169)
Q Consensus        92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~---------------------~~~~------~~~~~~~g  144 (169)
                      +.|++++.+|..|.||||+|+..|+.+++++|+++|++++.                     ++.+      ++.+|..|
T Consensus       363 ~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G  442 (682)
T PHA02876        363 ELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDL  442 (682)
T ss_pred             HcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCC
Confidence            66666666666666666666666666666666666655421                     0011      26788889


Q ss_pred             CCcccchh------hHHHHhhhcc
Q 030904          145 DTDCDDQN------DLVSLFIMQQ  162 (169)
Q Consensus       145 ~tpl~~A~------~~~~~li~~~  162 (169)
                      +||||+|+      +++++|++.|
T Consensus       443 ~TpLh~Aa~~~~~~~iv~lLl~~G  466 (682)
T PHA02876        443 STPLHYACKKNCKLDVIEMLLDNG  466 (682)
T ss_pred             ChHHHHHHHhCCcHHHHHHHHHCC
Confidence            99999884      6788888844

>PHA02917 ankyrin-like protein; Provisional

Probab=99.87  E-value=4.9e-21  Score=150.77  Aligned_cols=141  Identities=20%  Similarity=0.161  Sum_probs=110.1

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcC-----------------------------------CHHHHHHHHH
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLG-----------------------------------DVHSLRLALD   58 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g-----------------------------------~~~~~~~ll~   58 (169)
                      ..+++++|++.|++++  ..+..|+||||+|+..|                                   +.+++++|++
T Consensus        47 ~~~~v~~Ll~~ga~v~--~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~  124 (661)
T PHA02917         47 NVEVVKLLLDSGTNPL--HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVE  124 (661)
T ss_pred             cHHHHHHHHHCCCCcc--ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHH
Confidence            3567777777777775  34556667777666543                                   4566777777


Q ss_pred             hCCCCCcccCCCCCcHHHHH--HhcCCHHHHHHHHHcCCCCCccCC---CC-----------CChHHHHHh---------
Q 030904           59 NLSGSIDEPVEDGDTALHLT--CLYGYLPCVQLLLERGASLEAKDE---DG-----------AIPLHDACA---------  113 (169)
Q Consensus        59 ~~~~~~~~~~~~g~~~L~~a--~~~~~~~~~~~ll~~g~~~~~~~~---~~-----------~t~l~~a~~---------  113 (169)
                      . |++++.+|..|+||||.+  +..++.+++++|+++|++++..|.   .|           .||||+|+.         
T Consensus       125 ~-Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~  203 (661)
T PHA02917        125 H-GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDT  203 (661)
T ss_pred             c-CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccc
Confidence            7 899999999999999854  346899999999999999876543   23           599999975         


Q ss_pred             --cChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-------hHHHHhhhcccc
Q 030904          114 --GGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-------DLVSLFIMQQEV  164 (169)
Q Consensus       114 --~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-------~~~~~li~~~~~  164 (169)
                        .++.+++++|+++|+++       +.+|.+|.||||+|+       +++++|+..++.
T Consensus       204 ~~~~~~eiv~~Li~~Gadv-------n~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~d~  256 (661)
T PHA02917        204 RAYVRPEVVKCLINHGIKP-------SSIDKNYCTALQYYIKSSHIDIDIVKLLMKGIDN  256 (661)
T ss_pred             cccCcHHHHHHHHHCCCCc-------ccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCCcc
Confidence              45889999999999998       899999999999995       699999875544

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=3.5e-21  Score=137.98  Aligned_cols=106  Identities=13%  Similarity=0.135  Sum_probs=63.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCcccC----CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCcc-CCCCCChHHHHHh
Q 030904           39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPV----EDGDTALHLTCLYGYLPCVQLLLERGASLEAK-DEDGAIPLHDACA  113 (169)
Q Consensus        39 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~----~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~~t~l~~a~~  113 (169)
                      ++||.|+..|+.++++.|++. |++++.++    ..|.||||+|+..++.+++++|++.|++++.+ +..|.||||.|+.
T Consensus        35 ~lL~~A~~~~~~eivk~LL~~-GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~  113 (300)
T PHA02884         35 NILYSSIKFHYTDIIDAILKL-GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVL  113 (300)
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHH
Confidence            345555555666666666655 66665542    35666666666666666666666666666654 3356666666666


Q ss_pred             cChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh
Q 030904          114 GGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN  152 (169)
Q Consensus       114 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~  152 (169)
                      .++.+++++|++.|+++       +.+|..|.||+|+|+
T Consensus       114 ~~~~eivklLL~~GAdi-------n~kd~~G~TpL~~A~  145 (300)
T PHA02884        114 HGCLKCLEILLSYGADI-------NIQTNDMVTPIELAL  145 (300)
T ss_pred             cCCHHHHHHHHHCCCCC-------CCCCCCCCCHHHHHH
Confidence            66666666666666665       455666666666653

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.86  E-value=6.2e-22  Score=132.26  Aligned_cols=123  Identities=25%  Similarity=0.280  Sum_probs=112.1

Q ss_pred             cCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHH
Q 030904           31 ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHD  110 (169)
Q Consensus        31 ~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~  110 (169)
                      +..+++|+|||.||+.+|+++.+++||+. |++++...+...++|.+|++.|..++|++|+.++.++|.-|++|-|||-+
T Consensus       154 N~~De~GfTpLiWAaa~G~i~vV~fLL~~-GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLly  232 (296)
T KOG0502|consen  154 NACDEFGFTPLIWAAAKGHIPVVQFLLNS-GADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLY  232 (296)
T ss_pred             cCccccCchHhHHHHhcCchHHHHHHHHc-CCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeee
Confidence            45678999999999999999999999998 99999888888999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh----hHHHHhhhc
Q 030904          111 ACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN----DLVSLFIMQ  161 (169)
Q Consensus       111 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~----~~~~~li~~  161 (169)
                      |++.+|..|++.|++.|+++       +..+..|.+++.+|+    .+|+..|++
T Consensus       233 Avrgnhvkcve~Ll~sGAd~-------t~e~dsGy~~mdlAValGyr~Vqqvie~  280 (296)
T KOG0502|consen  233 AVRGNHVKCVESLLNSGADV-------TQEDDSGYWIMDLAVALGYRIVQQVIEK  280 (296)
T ss_pred             eecCChHHHHHHHHhcCCCc-------ccccccCCcHHHHHHHhhhHHHHHHHHH
Confidence            99999999999999999998       788999999999995    556655553

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.86  E-value=1.5e-21  Score=135.47  Aligned_cols=117  Identities=28%  Similarity=0.384  Sum_probs=109.3

Q ss_pred             cCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHH
Q 030904           31 ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHD  110 (169)
Q Consensus        31 ~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~  110 (169)
                      +..+.-|++|||+||..|+..+++.|+.. |+.+|..+....||||+|+.+|+.++++.|+++.+++|+.+..|.||||+
T Consensus        28 n~gddhgfsplhwaakegh~aivemll~r-garvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhy  106 (448)
T KOG0195|consen   28 NVGDDHGFSPLHWAAKEGHVAIVEMLLSR-GARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHY  106 (448)
T ss_pred             ccccccCcchhhhhhhcccHHHHHHHHhc-ccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhh
Confidence            34466889999999999999999999998 99999999999999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchhhHH
Q 030904          111 ACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQNDLV  155 (169)
Q Consensus       111 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~~~~  155 (169)
                      ||.-|...+.+-|+..|+.+       ++-|++|.||+.-|....
T Consensus       107 acfwgydqiaedli~~ga~v-------~icnk~g~tpldkakp~l  144 (448)
T KOG0195|consen  107 ACFWGYDQIAEDLISCGAAV-------NICNKKGMTPLDKAKPML  144 (448)
T ss_pred             hhhhcHHHHHHHHHhcccee-------eecccCCCCchhhhchHH
Confidence            99999999999999999997       899999999999995433

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=1.9e-21  Score=128.17  Aligned_cols=123  Identities=19%  Similarity=0.131  Sum_probs=99.0

Q ss_pred             CCcchhHHHHHHHHcCCHHHHHHHHHh----CCCCCcccCCCCCcHHHHHHhcCCH---HHHHHHHHcCCCCCccC-CCC
Q 030904           33 ETPPHLRDLAAAAQLGDVHSLRLALDN----LSGSIDEPVEDGDTALHLTCLYGYL---PCVQLLLERGASLEAKD-EDG  104 (169)
Q Consensus        33 ~~~~~~t~l~~a~~~g~~~~~~~ll~~----~~~~~~~~~~~g~~~L~~a~~~~~~---~~~~~ll~~g~~~~~~~-~~~  104 (169)
                      .+..|.||||+|+..|+...+......    .+...+.++..|.||||+|+..++.   +++++|++.|++++.++ ..|
T Consensus        13 ~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g   92 (154)
T PHA02736         13 PDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFG   92 (154)
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCC
Confidence            355688999999999984322221111    0112335688999999999999876   46889999999999998 489


Q ss_pred             CChHHHHHhcChHHHHHHHHh-cCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          105 AIPLHDACAGGFIEIVQLLIN-SASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       105 ~t~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      .||||+|+..++.+++++|++ .|+++       +.+|..|.||||+|+     +++++|+..+
T Consensus        93 ~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-------n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g  149 (154)
T PHA02736         93 NTPLHIAVYTQNYELATWLCNQPGVNM-------EILNYAFKTPYYVACERHDAKMMNILRAKG  149 (154)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhCCCCCC-------ccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999999997 58887       789999999999995     8899998854

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=5.1e-21  Score=147.65  Aligned_cols=146  Identities=26%  Similarity=0.320  Sum_probs=124.5

Q ss_pred             CCCChHHHHHHHHhcCCCCcc-------------cCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHH
Q 030904           10 EEDDSEEDNALFEEDGVNMDL-------------ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALH   76 (169)
Q Consensus        10 ~~~~~~~~~~~l~~~g~~~~~-------------~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~   76 (169)
                      .++...+..+..++.|.....             +..+..|.||||+||+.|+.+++..|+.. |++++.++.++.+|||
T Consensus       233 ve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~-Ga~I~~kn~d~~spLH  311 (929)
T KOG0510|consen  233 VEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGF-GASINSKNKDEESPLH  311 (929)
T ss_pred             hhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHc-CCcccccCCCCCCchH
Confidence            345566666666666554421             33466789999999999999999999998 9999999999999999


Q ss_pred             HHHhcCCHHHHHHHHH-cC-CCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhh--cccCCCCCcccchh
Q 030904           77 LTCLYGYLPCVQLLLE-RG-ASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLE--TVDAEGDTDCDDQN  152 (169)
Q Consensus        77 ~a~~~~~~~~~~~ll~-~g-~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~--~~~~~g~tpl~~A~  152 (169)
                      .|+.+|+..+++-|++ .+ ...+..|-.|.||||.|+++||..+++.|++.|+...      +  ..|.+|.||||.|+
T Consensus       312 ~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~------~~~e~D~dg~TaLH~Aa  385 (929)
T KOG0510|consen  312 FAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFL------NMSEADSDGNTALHLAA  385 (929)
T ss_pred             HHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhh------cccccccCCchhhhHHH
Confidence            9999999999999998 55 4568899999999999999999999999999999872      3  44999999999995


Q ss_pred             -----hHHHHhhhcc
Q 030904          153 -----DLVSLFIMQQ  162 (169)
Q Consensus       153 -----~~~~~li~~~  162 (169)
                           ..+++||..|
T Consensus       386 ~~g~~~av~~Li~~G  400 (929)
T KOG0510|consen  386 KYGNTSAVQKLISHG  400 (929)
T ss_pred             HhccHHHHHHHHHcC
Confidence                 8999999964

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1.9e-20  Score=134.23  Aligned_cols=138  Identities=14%  Similarity=0.133  Sum_probs=116.5

Q ss_pred             ChHHHHHHHHhcCCCCcccC--CCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCccc-CCCCCcHHHHHHhcCCHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLES--ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEP-VEDGDTALHLTCLYGYLPCVQL   89 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~--~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~-~~~g~~~L~~a~~~~~~~~~~~   89 (169)
                      ...+++++|++.|++++...  .+..|.||||+|+..++.+++++|++. |++++.+ +..|.||||+|+..++.+++++
T Consensus        44 ~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~-GADVN~~~~~~g~TpLh~Aa~~~~~eivkl  122 (300)
T PHA02884         44 HYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY-GADVNRYAEEAKITPLYISVLHGCLKCLEI  122 (300)
T ss_pred             CCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcCcccCCCCCCHHHHHHHcCCHHHHHH
Confidence            45678999999999998643  245789999999999999999999998 9999986 4679999999999999999999


Q ss_pred             HHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccch--hhHHHHhhhccc
Q 030904           90 LLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQ--NDLVSLFIMQQE  163 (169)
Q Consensus        90 ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A--~~~~~~li~~~~  163 (169)
                      |+..|++++.+|..|.||||+|++.++.+++.++...  .          .+..+.+|++.+  .+++++|+++.-
T Consensus       123 LL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~n~ei~~~Lish~v  186 (300)
T PHA02884        123 LLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN--E----------ISNFYKHPKKILINFDILKILVSHFI  186 (300)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC--c----------ccccccChhhhhccHHHHHHHHHHHH
Confidence            9999999999999999999999999988887665432  2          245667888865  488888877543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.9e-20  Score=139.39  Aligned_cols=144  Identities=14%  Similarity=0.008  Sum_probs=122.9

Q ss_pred             CCCCChHHHHHHHHhcCCCCcc----cCCCcchhHHHHHHHH--cCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcC
Q 030904            9 MEEDDSEEDNALFEEDGVNMDL----ESETPPHLRDLAAAAQ--LGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYG   82 (169)
Q Consensus         9 ~~~~~~~~~~~~l~~~g~~~~~----~~~~~~~~t~l~~a~~--~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~   82 (169)
                      ......-++++++..+|+++++    -..+...+|+||+++.  .|+.+++++|+++ |++++..  .+.||+|+|+..+
T Consensus        84 ~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~-GADIn~~--~~~t~lh~A~~~~  160 (437)
T PHA02795         84 FAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDH-GAVIYKI--ECLNAYFRGICKK  160 (437)
T ss_pred             HhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHC-CCCCCCC--CCCCHHHHHHHcC
Confidence            3445677899999999999881    1245568899999999  8999999999998 9999874  4589999999999


Q ss_pred             CHHHHHHHHHcCCCC-Ccc-----CCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh----
Q 030904           83 YLPCVQLLLERGASL-EAK-----DEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN----  152 (169)
Q Consensus        83 ~~~~~~~ll~~g~~~-~~~-----~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~----  152 (169)
                      +.+++++|+++|++. +..     +..+.|++|.+...++.+++++|+++|+++       +.+|..|.||||+|+    
T Consensus       161 ~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADI-------N~kD~~G~TpLh~Aa~~g~  233 (437)
T PHA02795        161 ESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDI-------NQLDAGGRTLLYRAIYAGY  233 (437)
T ss_pred             cHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCc-------CcCCCCCCCHHHHHHHcCC
Confidence            999999999999853 222     134778999999999999999999999998       899999999999995    


Q ss_pred             -hHHHHhhhcc
Q 030904          153 -DLVSLFIMQQ  162 (169)
Q Consensus       153 -~~~~~li~~~  162 (169)
                       +++++|++.|
T Consensus       234 ~eiVelLL~~G  244 (437)
T PHA02795        234 IDLVSWLLENG  244 (437)
T ss_pred             HHHHHHHHHCC
Confidence             9999999954

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.85  E-value=2.7e-20  Score=111.67  Aligned_cols=85  Identities=39%  Similarity=0.617  Sum_probs=79.3

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHH
Q 030904           41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIV  120 (169)
Q Consensus        41 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~  120 (169)
                      ||+|+..|+.+++++|++. +.+++.    |.+|||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~-~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK-GADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT-TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHC-cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            7899999999999999997 777765    88999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCc
Q 030904          121 QLLINSASGT  130 (169)
Q Consensus       121 ~~ll~~~~~~  130 (169)
                      ++|+++|+++
T Consensus        76 ~~Ll~~g~~~   85 (89)
T PF12796_consen   76 KLLLEHGADV   85 (89)
T ss_dssp             HHHHHTTT-T
T ss_pred             HHHHHcCCCC
Confidence            9999999987

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=2.2e-20  Score=124.40  Aligned_cols=119  Identities=14%  Similarity=0.103  Sum_probs=101.6

Q ss_pred             HHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHH---HHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           17 DNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHS---LRLALDNLSGSIDEPV-EDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        17 ~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~---~~~ll~~~~~~~~~~~-~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      +++++.+.|..++  ..+..|.||||+|+..|+.+.   +++|+.. |++++.++ ..|.||||+|+..++.+++++|+.
T Consensus        39 ~~~~l~~~g~~~~--~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~-Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~  115 (166)
T PHA02743         39 VAPFISGDGHLLH--RYDHHGRQCTHMVAWYDRANAVMKIELLVNM-GADINARELGTGNTLLHIAASTKNYELAEWLCR  115 (166)
T ss_pred             HHHHHhhcchhhh--ccCCCCCcHHHHHHHhCccCHHHHHHHHHHc-CCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHh
Confidence            4445667777665  345578899999999988654   7888887 99999998 589999999999999999999995


Q ss_pred             -cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCC
Q 030904           93 -RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGD  145 (169)
Q Consensus        93 -~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~  145 (169)
                       .|++++.++..|.||||+|+..++.+++++|+++|+++       +.++..|.
T Consensus       116 ~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-------~~~~~~~~  162 (166)
T PHA02743        116 QLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVC-------DDPLSIGL  162 (166)
T ss_pred             ccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------CCcccCCc
Confidence             79999999999999999999999999999999999997       56665554

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=1.4e-20  Score=145.18  Aligned_cols=146  Identities=27%  Similarity=0.327  Sum_probs=117.1

Q ss_pred             ChHHHHHHHHh-----cCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCC--------------CcccCCCCCc
Q 030904           13 DSEEDNALFEE-----DGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGS--------------IDEPVEDGDT   73 (169)
Q Consensus        13 ~~~~~~~~l~~-----~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~--------------~~~~~~~g~~   73 (169)
                      .+.+..+.++.     .+..+++.  +..+.+|||.|+..|+.++++.+|+.+...              ++..|.+|.|
T Consensus       198 ~s~e~mEi~l~~~g~~r~~~in~~--~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~t  275 (929)
T KOG0510|consen  198 GSKECMEIFLPEHGYERQTHINFD--NNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCT  275 (929)
T ss_pred             cchhhhhhhhccccchhhcccccc--cCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCc
Confidence            34444555554     33344443  446678999999999999999999863222              2235788999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHh-cCCCchhhhhhhhcccCCCCCcccchh
Q 030904           74 ALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN-SASGTECVKRMLETVDAEGDTDCDDQN  152 (169)
Q Consensus        74 ~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~g~tpl~~A~  152 (169)
                      |||+|++.|+.++++.|+..|++++.++.++.||||.|++.|+.++++.|++ .+...      ++..|-.|.||||+|+
T Consensus       276 pLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rl------lne~D~~g~tpLHlaa  349 (929)
T KOG0510|consen  276 PLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRL------LNESDLHGMTPLHLAA  349 (929)
T ss_pred             hHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccc------cccccccCCCchhhhh
Confidence            9999999999999999999999999999999999999999999999999998 44443      6889999999999995


Q ss_pred             -----hHHHHhhhcccccc
Q 030904          153 -----DLVSLFIMQQEVNT  166 (169)
Q Consensus       153 -----~~~~~li~~~~~~~  166 (169)
                           +++++||.+|....
T Consensus       350 ~~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  350 KSGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             hcCHHHHHHHHHhcChhhh
Confidence                 89999999876543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.84  E-value=8.7e-21  Score=152.92  Aligned_cols=143  Identities=29%  Similarity=0.428  Sum_probs=121.2

Q ss_pred             CCChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH
Q 030904           11 EDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLL   90 (169)
Q Consensus        11 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~l   90 (169)
                      .......++.+++.++.++..  ...+.+++|.+...+....++.+++. |+.++.++..|+||||.|+.+|+.++|++|
T Consensus       483 q~Gh~~~~~llle~~~~~~~~--~~~~l~~lhla~~~~~v~~~~~l~~~-ga~v~~~~~r~~TpLh~A~~~g~v~~VkfL  559 (1143)
T KOG4177|consen  483 QEGHTEVVQLLLEGGANDNLD--AKKGLTPLHLAADEDTVKVAKILLEH-GANVDLRTGRGYTPLHVAVHYGNVDLVKFL  559 (1143)
T ss_pred             ccCCchHHHHhhhcCCccCcc--chhccchhhhhhhhhhHHHHHHHhhc-CCceehhcccccchHHHHHhcCCchHHHHh
Confidence            344556777777777665543  45677888888888888888888888 889999999999999999999999999999


Q ss_pred             HHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhccc
Q 030904           91 LERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQE  163 (169)
Q Consensus        91 l~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~~  163 (169)
                      +++|++++.+++.|+||||.|+..|+.+++++|+++|+++       |..+.+|.|||+.|.     +++++++..+.
T Consensus       560 Le~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~v-------na~d~~g~TpL~iA~~lg~~~~~k~l~~~~~  630 (1143)
T KOG4177|consen  560 LEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASV-------NAADLDGFTPLHIAVRLGYLSVVKLLKVVTA  630 (1143)
T ss_pred             hhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCC-------CcccccCcchhHHHHHhcccchhhHHHhccC
Confidence            9999999999999999999999999999999999999998       799999999999995     56666655433

>PHA02917 ankyrin-like protein; Provisional

Probab=99.83  E-value=9.9e-20  Score=143.46  Aligned_cols=147  Identities=17%  Similarity=0.090  Sum_probs=113.8

Q ss_pred             CCCChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHc---CCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcC----
Q 030904           10 EEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQL---GDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYG----   82 (169)
Q Consensus        10 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~----   82 (169)
                      .++..-+.++.++.+|...+  ..+..|.||||+|+..   |+.++++.|++. |++++.++..|+||||+|+..|    
T Consensus         7 ~~~~~~~~~~~l~~~~~~~~--~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~-ga~v~~~~~~g~TpL~~Aa~~g~~~v   83 (661)
T PHA02917          7 NEEVALDELKQMLRDRDPND--TRNQFKNNALHAYLFNEHCNNVEVVKLLLDS-GTNPLHKNWRQLTPLEEYTNSRHVKV   83 (661)
T ss_pred             hhHHHHHHHHHHHhccCccc--ccCCCCCcHHHHHHHhhhcCcHHHHHHHHHC-CCCccccCCCCCCHHHHHHHcCChhH
Confidence            34444444455555666664  4466788999998665   889999999998 9999999999999999877644    


Q ss_pred             -------------------------------CHHHHHHHHHcCCCCCccCCCCCChHHHH--HhcChHHHHHHHHhcCCC
Q 030904           83 -------------------------------YLPCVQLLLERGASLEAKDEDGAIPLHDA--CAGGFIEIVQLLINSASG  129 (169)
Q Consensus        83 -------------------------------~~~~~~~ll~~g~~~~~~~~~~~t~l~~a--~~~~~~~~~~~ll~~~~~  129 (169)
                                                     +.+++++|++.|++++.+|..|.||||.+  +..|+.+++++|+++|++
T Consensus        84 ~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~  163 (661)
T PHA02917         84 NKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCS  163 (661)
T ss_pred             HHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCC
Confidence                                           45678889999999999999999999954  457899999999999999


Q ss_pred             chhhhhhhhcccC--------------CCCCcccchh----------------hHHHHhhh-cccccc
Q 030904          130 TECVKRMLETVDA--------------EGDTDCDDQN----------------DLVSLFIM-QQEVNT  166 (169)
Q Consensus       130 ~~~~~~~~~~~~~--------------~g~tpl~~A~----------------~~~~~li~-~~~~~~  166 (169)
                      +       +.++.              .+.||||+|+                +++++||+ ..++|.
T Consensus       164 v-------n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~  224 (661)
T PHA02917        164 V-------LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSS  224 (661)
T ss_pred             c-------cccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCccc
Confidence            7       44332              2359999884                69999998 445543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.82  E-value=1e-19  Score=117.54  Aligned_cols=126  Identities=19%  Similarity=0.229  Sum_probs=106.1

Q ss_pred             HHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Q 030904           18 NALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASL   97 (169)
Q Consensus        18 ~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~   97 (169)
                      ++.|++..++- .+.++..++||||.|+..|+.++++.|+.. |++.+.+...||||||-||...+.+++.+|+++|+++
T Consensus        79 V~~lL~e~an~-vNtrD~D~YTpLHRAaYn~h~div~~ll~~-gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDV  156 (228)
T KOG0512|consen   79 VQRLLSEKANH-VNTRDEDEYTPLHRAAYNGHLDIVHELLLS-GANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADV  156 (228)
T ss_pred             HHHHHHhcccc-ccccccccccHHHHHHhcCchHHHHHHHHc-cCCcccccccCccchhhhhcccchhHHHHHHhccCcc
Confidence            34444433332 346788899999999999999999999988 9999999999999999999999999999999999999


Q ss_pred             CccCCCCCChHHHHHhcChH-HHHHHHH-hcCCCchhhhhhhhcccCCCCCcccchh
Q 030904           98 EAKDEDGAIPLHDACAGGFI-EIVQLLI-NSASGTECVKRMLETVDAEGDTDCDDQN  152 (169)
Q Consensus        98 ~~~~~~~~t~l~~a~~~~~~-~~~~~ll-~~~~~~~~~~~~~~~~~~~g~tpl~~A~  152 (169)
                      ++......||||.|+...+. ..+++|+ ..+..+       ..++..+.||+..|-
T Consensus       157 nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~p-------g~~nn~eeta~~iAR  206 (228)
T KOG0512|consen  157 NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHP-------GLKNNLEETAFDIAR  206 (228)
T ss_pred             cccccccchhhHHhhcccchHHHHHHHhhccccCh-------hhhcCccchHHHHHH
Confidence            99999899999999986654 4456554 567776       678899999999994

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.82  E-value=6.9e-20  Score=147.84  Aligned_cols=138  Identities=27%  Similarity=0.371  Sum_probs=122.4

Q ss_pred             CCCChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHH
Q 030904           10 EEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQL   89 (169)
Q Consensus        10 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~   89 (169)
                      ...+.....+.+.+.|++++..  +..++||||.||..|+.+.|++|+++ |++++.++..|+||||.|+.+|+.+++.+
T Consensus       515 ~~~~~v~~~~~l~~~ga~v~~~--~~r~~TpLh~A~~~g~v~~VkfLLe~-gAdv~ak~~~G~TPLH~Aa~~G~~~i~~L  591 (1143)
T KOG4177|consen  515 ADEDTVKVAKILLEHGANVDLR--TGRGYTPLHVAVHYGNVDLVKFLLEH-GADVNAKDKLGYTPLHQAAQQGHNDIAEL  591 (1143)
T ss_pred             hhhhhHHHHHHHhhcCCceehh--cccccchHHHHHhcCCchHHHHhhhC-CccccccCCCCCChhhHHHHcChHHHHHH
Confidence            4556677888888999998865  66889999999999999999999999 99999999999999999999999999999


Q ss_pred             HHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh
Q 030904           90 LLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN  152 (169)
Q Consensus        90 ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~  152 (169)
                      |+++|+++|..|.+|.||||.|++.|+.++++.++..+..+.  .......+++|.+|...+.
T Consensus       592 Llk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~--~~~~~~e~~~g~~p~~v~e  652 (1143)
T KOG4177|consen  592 LLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPA--ATDPVKENRKGAVPEDVAE  652 (1143)
T ss_pred             HHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCccc--cccchhhhhcccChhhHHH
Confidence            999999999999999999999999999999999999988820  0011567899999988773

>PHA02730 ankyrin-like protein; Provisional

Probab=99.82  E-value=3.4e-19  Score=138.56  Aligned_cols=149  Identities=15%  Similarity=0.034  Sum_probs=120.9

Q ss_pred             CCCChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcC---CHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcC--CH
Q 030904           10 EEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLG---DVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYG--YL   84 (169)
Q Consensus        10 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g---~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~--~~   84 (169)
                      +++.+....+++++...+++ ...+..|.||||+|+..|   +.++++.|++. |++++.+|..|.||||+|+.++  +.
T Consensus        15 ~~~~~~~~~~~~~~~~~~in-~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~-GAdin~kD~~G~TPLh~Aa~~~~~~~   92 (672)
T PHA02730         15 DEDVTYKKIKLEIETCHNLS-KHIDRRGNNALHCYVSNKCDTDIKIVRLLLSR-GVERLCRNNEGLTPLGVYSKRKYVKS   92 (672)
T ss_pred             cccchHHHHHHHHHHhcchh-hhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhC-CCCCcccCCCCCChHHHHHHcCCCcH
Confidence            45566677788888777776 345567899999999997   49999999988 9999999999999999999876  79


Q ss_pred             HHHHHHHHcCC--CCCccCCCCCChHHHHHh--cChHHHHHHHHh-cCCCchhhhhhhhccc-CCCCCcccchh-----h
Q 030904           85 PCVQLLLERGA--SLEAKDEDGAIPLHDACA--GGFIEIVQLLIN-SASGTECVKRMLETVD-AEGDTDCDDQN-----D  153 (169)
Q Consensus        85 ~~~~~ll~~g~--~~~~~~~~~~t~l~~a~~--~~~~~~~~~ll~-~~~~~~~~~~~~~~~~-~~g~tpl~~A~-----~  153 (169)
                      +++++|++.|+  +++..+.-+.+|++.++.  +++.+++++|++ .+.+++..   .+..+ ..|-+|+++|.     +
T Consensus        93 eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~---~~~~~~~~~~~~~yl~~~~~~~e  169 (672)
T PHA02730         93 QIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKN---TNYYIHCLGLVDIYVTTPNPRPE  169 (672)
T ss_pred             HHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhh---hhhhccccchhhhhHhcCCCchH
Confidence            99999999965  457778778999999888  899999999996 66776310   01111 37899999994     9


Q ss_pred             HHHHhhhccc
Q 030904          154 LVSLFIMQQE  163 (169)
Q Consensus       154 ~~~~li~~~~  163 (169)
                      ++++||+.|.
T Consensus       170 IvklLi~~g~  179 (672)
T PHA02730        170 VLLWLLKSEC  179 (672)
T ss_pred             HHHHHHHcCC
Confidence            9999999654

>PHA02792 ankyrin-like protein; Provisional

Probab=99.81  E-value=6.1e-19  Score=135.97  Aligned_cols=138  Identities=12%  Similarity=0.059  Sum_probs=119.1

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCC--CcHHHHHHhcCCH---HHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDG--DTALHLTCLYGYL---PCV   87 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g--~~~L~~a~~~~~~---~~~   87 (169)
                      ...++++++++.|++..    .......++.|+..|+.+++++|++. |++++.++..|  .||||+|+.....   +++
T Consensus       319 v~ieiIK~LId~Ga~~~----r~~~~n~~~~Aa~~gn~eIVelLIs~-GADIN~kD~~g~~~TpLh~A~~n~~~~v~~Il  393 (631)
T PHA02792        319 VYINVIKCMIDEGATLY----RFKHINKYFQKFDNRDPKVVEYILKN-GNVVVEDDDNIINIMPLFPTLSIHESDVLSIL  393 (631)
T ss_pred             ccHHHHHHHHHCCCccc----cCCcchHHHHHHHcCCHHHHHHHHHc-CCchhhhcCCCCChhHHHHHHHhccHhHHHHH
Confidence            45678999999999975    12245568999999999999999998 99999988764  6999987766554   368


Q ss_pred             HHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh---------------
Q 030904           88 QLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN---------------  152 (169)
Q Consensus        88 ~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~---------------  152 (169)
                      ++++++|++++.+|..|.||||.|+..++.+++++|+++|+++       +.++..|.||++.|.               
T Consensus       394 klLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADI-------N~kD~~G~TpL~~A~~~~~~~~~~i~~~~~  466 (631)
T PHA02792        394 KLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADI-------NITTKYGSTCIGICVILAHACIPEIAELYI  466 (631)
T ss_pred             HHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCC-------CCcCCCCCCHHHHHHHHHhcccHHHHHHHH
Confidence            8999999999999999999999999999999999999999998       899999999999983               


Q ss_pred             hHHHHhhhcc
Q 030904          153 DLVSLFIMQQ  162 (169)
Q Consensus       153 ~~~~~li~~~  162 (169)
                      +++++|++++
T Consensus       467 ~il~lLLs~~  476 (631)
T PHA02792        467 KILEIILSKL  476 (631)
T ss_pred             HHHHHHHhcC
Confidence            5688888865

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.81  E-value=2.1e-19  Score=120.26  Aligned_cols=120  Identities=23%  Similarity=0.241  Sum_probs=105.7

Q ss_pred             CcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHh
Q 030904           34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACA  113 (169)
Q Consensus        34 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~  113 (169)
                      +..+++|+.+++.+.+.+.+..+.   ...+|..|..|.|||.||+.+|+.++|++|++.|+++++......++|.+|++
T Consensus       126 s~~p~s~~slsVhql~L~~~~~~~---~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~  202 (296)
T KOG0502|consen  126 SLMPWSPLSLSVHQLHLDVVDLLV---NNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATR  202 (296)
T ss_pred             ccccCChhhHHHHHHHHHHHHHHh---hccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhc
Confidence            446677888888777666555444   34688999999999999999999999999999999999999889999999999


Q ss_pred             cChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccch-----hhHHHHhhhccc
Q 030904          114 GGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQ-----NDLVSLFIMQQE  163 (169)
Q Consensus       114 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A-----~~~~~~li~~~~  163 (169)
                      .|..+++++|+.++.++       |.-|.+|.|||-+|     +++++.||..|.
T Consensus       203 ggytdiV~lLL~r~vdV-------NvyDwNGgTpLlyAvrgnhvkcve~Ll~sGA  250 (296)
T KOG0502|consen  203 GGYTDIVELLLTREVDV-------NVYDWNGGTPLLYAVRGNHVKCVESLLNSGA  250 (296)
T ss_pred             CChHHHHHHHHhcCCCc-------ceeccCCCceeeeeecCChHHHHHHHHhcCC
Confidence            99999999999999997       89999999999999     499999999553

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.79  E-value=1.3e-18  Score=129.12  Aligned_cols=136  Identities=25%  Similarity=0.373  Sum_probs=117.9

Q ss_pred             HHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Q 030904           16 EDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGA   95 (169)
Q Consensus        16 ~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~   95 (169)
                      .-+..++..|+.++  ..+..|+|+||.+|.-.+.+++++|++. ++.+|..|..|+||||.|+..++..++.+|++.|+
T Consensus        54 ~ev~~ll~~ga~~~--~~n~DglTalhq~~id~~~e~v~~l~e~-ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA  130 (527)
T KOG0505|consen   54 EEVRKLLNRGASPN--LCNVDGLTALHQACIDDNLEMVKFLVEN-GANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGA  130 (527)
T ss_pred             HHHHHHhccCCCcc--ccCCccchhHHHHHhcccHHHHHHHHHh-cCCccccccccCCcchhhcccccHHHHHHHHHhhh
Confidence            34555666676664  4577889999999999999999999998 99999999999999999999999999999999887


Q ss_pred             CCCccC-----------------------------------------------------------CCCCChHHHHHhcCh
Q 030904           96 SLEAKD-----------------------------------------------------------EDGAIPLHDACAGGF  116 (169)
Q Consensus        96 ~~~~~~-----------------------------------------------------------~~~~t~l~~a~~~~~  116 (169)
                      ++...+                                                           ..|-|.||.|+.+|.
T Consensus       131 ~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy  210 (527)
T KOG0505|consen  131 NLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGY  210 (527)
T ss_pred             hhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhH
Confidence            644333                                                           236788999999999


Q ss_pred             HHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904          117 IEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus       117 ~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      .++.++|+++|.++       +.+|.+|+||||.|+     +.+++|++.
T Consensus       211 ~e~~~lLl~ag~~~-------~~~D~dgWtPlHAAA~Wg~~~~~elL~~~  253 (527)
T KOG0505|consen  211 TEVAALLLQAGYSV-------NIKDYDGWTPLHAAAHWGQEDACELLVEH  253 (527)
T ss_pred             HHHHHHHHHhccCc-------ccccccCCCcccHHHHhhhHhHHHHHHHh
Confidence            99999999999998       899999999999985     888888873

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.79  E-value=2.9e-18  Score=138.92  Aligned_cols=118  Identities=22%  Similarity=0.287  Sum_probs=107.2

Q ss_pred             CcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHh
Q 030904           34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACA  113 (169)
Q Consensus        34 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~  113 (169)
                      ++...++|+.||..|+.++++.|++. |++++..|..|.||||+|+..|+.+++++|++.|++++.+|.+|.||||.|+.
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~-G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~  600 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKA-KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAIS  600 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHH
Confidence            33456889999999999999999988 99999999999999999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904          114 GGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus       114 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      .|+.+++++|++.+...       +  ...+.++||.|+     +++++|++.
T Consensus       601 ~g~~~iv~~L~~~~~~~-------~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~  644 (823)
T PLN03192        601 AKHHKIFRILYHFASIS-------D--PHAAGDLLCTAAKRNDLTAMKELLKQ  644 (823)
T ss_pred             hCCHHHHHHHHhcCccc-------C--cccCchHHHHHHHhCCHHHHHHHHHC
Confidence            99999999999887654       2  356789999995     899999984

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.78  E-value=2.8e-18  Score=99.76  Aligned_cols=102  Identities=24%  Similarity=0.415  Sum_probs=91.7

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHH
Q 030904           41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIV  120 (169)
Q Consensus        41 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~  120 (169)
                      +.|+...|.++.++..+.. |.++|.. ..|++|||+|+-+|+.++++||+..|++++.+|..|.|||..|+..||.+++
T Consensus         6 ~~W~vkNG~~DeVk~~v~~-g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNE-GLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             HhhhhccCcHHHHHHHHHc-cccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            5688999999999999988 7777765 4899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCchhhhhhhhcccCCCCCcccch
Q 030904          121 QLLINSASGTECVKRMLETVDAEGDTDCDDQ  151 (169)
Q Consensus       121 ~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A  151 (169)
                      ++|++.|++.       ..+..+|.+.+..+
T Consensus        84 klLL~~GAdr-------t~~~PdG~~~~eat  107 (117)
T KOG4214|consen   84 KLLLQNGADR-------TIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHcCccc-------ceeCCCchhHHhhc
Confidence            9999999997       56667777766655

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.77  E-value=1.4e-17  Score=105.26  Aligned_cols=117  Identities=33%  Similarity=0.533  Sum_probs=105.6

Q ss_pred             CcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHh
Q 030904           34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACA  113 (169)
Q Consensus        34 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~  113 (169)
                      +..|.||||+|+..++.+++++|+.. +...+..+..|.+|+|.|+..+..+++++|+..|+.++..+..+.||+|+|+.
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~-~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            35678999999999999999999988 77778889999999999999999999999999999888889999999999999


Q ss_pred             cChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHh
Q 030904          114 GGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLF  158 (169)
Q Consensus       114 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~l  158 (169)
                      .++.+++++|++.+.+.       +..+..|.||++.|.     +++++|
T Consensus        83 ~~~~~~~~~L~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          83 NGNLDVVKLLLKHGADV-------NARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             cCcHHHHHHHHHcCCCC-------cccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            99999999999998776       678899999999985     555554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02741 hypothetical protein; Provisional

Probab=99.77  E-value=6.7e-18  Score=112.85  Aligned_cols=116  Identities=17%  Similarity=0.157  Sum_probs=97.1

Q ss_pred             CChHHHHHHHHh------cCCCCcccCCCcchhHHHHHHHHcCC----HHHHHHHHHhCCCCCcccCC-CCCcHHHHHHh
Q 030904           12 DDSEEDNALFEE------DGVNMDLESETPPHLRDLAAAAQLGD----VHSLRLALDNLSGSIDEPVE-DGDTALHLTCL   80 (169)
Q Consensus        12 ~~~~~~~~~l~~------~g~~~~~~~~~~~~~t~l~~a~~~g~----~~~~~~ll~~~~~~~~~~~~-~g~~~L~~a~~   80 (169)
                      .+..++++++..      .|+++  +..+..|.||||+|+..|+    .+++++|+.. |++++.++. .|.||||+|+.
T Consensus        31 ~g~~~~v~~l~~~~~~~~~ga~i--n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~-gadin~~~~~~g~TpLh~A~~  107 (169)
T PHA02741         31 CGCFDIIARFTPFIRGDCHAAAL--NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL-GADINAQEMLEGDTALHLAAH  107 (169)
T ss_pred             cCCHHHHHHHHHHhccchhhhhh--hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc-CCCCCCCCcCCCCCHHHHHHH
Confidence            344556665532      23444  4556688999999999998    5888999987 999999885 89999999999


Q ss_pred             cCCHHHHHHHHH-cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCc
Q 030904           81 YGYLPCVQLLLE-RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT  130 (169)
Q Consensus        81 ~~~~~~~~~ll~-~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~  130 (169)
                      .++.+++++|+. .|++++..|..|.||||.|+..++.+++++|++.+...
T Consensus       108 ~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741        108 RRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             cCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            999999999998 49999999999999999999999999999999876543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.77  E-value=5.8e-19  Score=125.76  Aligned_cols=125  Identities=20%  Similarity=0.277  Sum_probs=72.8

Q ss_pred             CCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhc-----CCHHHHHHHHHcCCCCCcc-CCCCCC
Q 030904           33 ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLY-----GYLPCVQLLLERGASLEAK-DEDGAI  106 (169)
Q Consensus        33 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~-----~~~~~~~~ll~~g~~~~~~-~~~~~t  106 (169)
                      .+..|.|+|||++..+++++|+.||+.+-++++.+++.|+||+++++..     .+..+|.-|+..| ++|++ ...|+|
T Consensus       264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQT  342 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQT  342 (452)
T ss_pred             hcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcch
Confidence            3556667777777777777777777775567777777766666655432     1334444444332 33332 234555


Q ss_pred             hHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhccccc
Q 030904          107 PLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQEVN  165 (169)
Q Consensus       107 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~~~~  165 (169)
                      +|.+|+.+|+.++++.||.+|+++       |++|.+|-|+|.+|+     +|+++|+....-|
T Consensus       343 ALMLAVSHGr~d~vk~LLacgAdV-------NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd  399 (452)
T KOG0514|consen  343 ALMLAVSHGRVDMVKALLACGADV-------NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD  399 (452)
T ss_pred             hhhhhhhcCcHHHHHHHHHccCCC-------ccccCCccHHHhhhhhhChHHHHHHHhccCccc
Confidence            666666666666666665555554       555555666665553     5555555544433

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.76  E-value=5.6e-18  Score=136.22  Aligned_cols=126  Identities=19%  Similarity=0.187  Sum_probs=107.2

Q ss_pred             CcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccC--------------CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCc
Q 030904           34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV--------------EDGDTALHLTCLYGYLPCVQLLLERGASLEA   99 (169)
Q Consensus        34 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~--------------~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~   99 (169)
                      ...|.||||.|+..|+.++++.|++. |++++.++              ..|.+|||.|+..++.+++++|++.|++++.
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~-GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~  203 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLER-GASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILT  203 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhh
Confidence            34689999999999999999999998 99888653              3589999999999999999999999999999


Q ss_pred             cCCCCCChHHHHHhcC---------hHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904          100 KDEDGAIPLHDACAGG---------FIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM  160 (169)
Q Consensus       100 ~~~~~~t~l~~a~~~~---------~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~  160 (169)
                      +|..|+||||+|+..+         ...+.+++++.+........+.+.+|.+|.||||+|+     ++++++++
T Consensus       204 ~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       204 ADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             HhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence            9999999999999987         2346677777766654444455778999999999995     88888888

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.75  E-value=3.9e-18  Score=112.36  Aligned_cols=97  Identities=14%  Similarity=0.163  Sum_probs=88.5

Q ss_pred             CCcchhHHHHHHHHcCCHH---HHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCccCCCCCCh
Q 030904           33 ETPPHLRDLAAAAQLGDVH---SLRLALDNLSGSIDEPV-EDGDTALHLTCLYGYLPCVQLLLER-GASLEAKDEDGAIP  107 (169)
Q Consensus        33 ~~~~~~t~l~~a~~~g~~~---~~~~ll~~~~~~~~~~~-~~g~~~L~~a~~~~~~~~~~~ll~~-g~~~~~~~~~~~t~  107 (169)
                      .+..|.||||+|+..|+.+   .+++|++. |++++.++ ..|.||||+|+..++.+++++|+.. |++++.++..|.||
T Consensus        51 ~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~-gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tp  129 (154)
T PHA02736         51 YNRHGKQCVHIVSNPDKADPQEKLKLLMEW-GADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTP  129 (154)
T ss_pred             hcCCCCEEEEeecccCchhHHHHHHHHHHc-CCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCH
Confidence            4667889999999999864   57888887 99999998 5899999999999999999999984 89999999999999


Q ss_pred             HHHHHhcChHHHHHHHHhcCCCc
Q 030904          108 LHDACAGGFIEIVQLLINSASGT  130 (169)
Q Consensus       108 l~~a~~~~~~~~~~~ll~~~~~~  130 (169)
                      ||+|+..|+.+++++|++.|++.
T Consensus       130 L~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736        130 YYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999876

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.73  E-value=5.3e-17  Score=115.91  Aligned_cols=136  Identities=23%  Similarity=0.331  Sum_probs=113.1

Q ss_pred             hHHHHHHHHhcCC-CCcccCCCcchhHHHHHHHHc-----CCHHHHHHHHHhCCCCCccc-CCCCCcHHHHHHhcCCHHH
Q 030904           14 SEEDNALFEEDGV-NMDLESETPPHLRDLAAAAQL-----GDVHSLRLALDNLSGSIDEP-VEDGDTALHLTCLYGYLPC   86 (169)
Q Consensus        14 ~~~~~~~l~~~g~-~~~~~~~~~~~~t~l~~a~~~-----g~~~~~~~ll~~~~~~~~~~-~~~g~~~L~~a~~~~~~~~   86 (169)
                      .-.+++.|++.|. ++|  ..+.-|+||++.++..     .+..+|..|+.- | ++|.+ ...|+|+|++|+.+|+.++
T Consensus       280 NF~VV~~LLDSgvC~VD--~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m-g-nVNaKAsQ~gQTALMLAVSHGr~d~  355 (452)
T KOG0514|consen  280 NFDVVSILLDSGVCDVD--QQNRAGYTPVMLAALAKLKQPADRTVVERLFKM-G-DVNAKASQHGQTALMLAVSHGRVDM  355 (452)
T ss_pred             chHHHHHHhccCccccc--ccccccccHHHHHHHHhhcchhhHHHHHHHHhc-c-CcchhhhhhcchhhhhhhhcCcHHH
Confidence            3457777777665 444  4566899999988863     357889999976 3 56665 4679999999999999999


Q ss_pred             HHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhc-CCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904           87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINS-ASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM  160 (169)
Q Consensus        87 ~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~  160 (169)
                      ++.|+.+|+++|.+|.+|.|+|.+|+.+||.+++++||.. +++.       ...|.+|-|+|..|.     +|..+|..
T Consensus       356 vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~-------sLtD~DgSTAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  356 VKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDI-------SLTDVDGSTALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             HHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccc-------eeecCCCchhhhhHHhcCchHHHHHHHH
Confidence            9999999999999999999999999999999999999964 6776       689999999999993     77766655

>PHA02792 ankyrin-like protein; Provisional

Probab=99.72  E-value=1.9e-16  Score=122.42  Aligned_cols=133  Identities=13%  Similarity=0.216  Sum_probs=111.0

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCH---HHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDV---HSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ   88 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~---~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~   88 (169)
                      ....+++++|++.|++++.......+.||||.|+.....   +++++++.. |++++.+|..|.||||+|+..++.++++
T Consensus       349 ~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~-GADIN~kD~~G~TPLh~Aa~~~n~eive  427 (631)
T PHA02792        349 NRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPY-IDDINKIDKHGRSILYYCIESHSVSLVE  427 (631)
T ss_pred             cCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhc-CCccccccccCcchHHHHHHcCCHHHHH
Confidence            345678999999999998766656678999988776654   357888887 9999999999999999999999999999


Q ss_pred             HHHHcCCCCCccCCCCCChHHHHHh----------cChHHHHHHHHhcCCCchhhhhhhhcccCCCC
Q 030904           89 LLLERGASLEAKDEDGAIPLHDACA----------GGFIEIVQLLINSASGTECVKRMLETVDAEGD  145 (169)
Q Consensus        89 ~ll~~g~~~~~~~~~~~t~l~~a~~----------~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~  145 (169)
                      +|++.|++++.++..|.||||.|+.          ....+++++|++++.++++.+..+......+.
T Consensus       428 lLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~~i~~T~~~~~~~~~  494 (631)
T PHA02792        428 WLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIECIKKTVDYLSNDRY  494 (631)
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHhhccc
Confidence            9999999999999999999999975          22356799999999999887777665444444

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.71  E-value=6.6e-18  Score=117.55  Aligned_cols=111  Identities=26%  Similarity=0.384  Sum_probs=97.9

Q ss_pred             HHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHH
Q 030904           45 AQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI  124 (169)
Q Consensus        45 ~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll  124 (169)
                      |+.|+.-.++..|+...-+.|.-|..|.+|||||++.|+..+++.|+.+|+.+|..+....||||+|+.+||.+++..|+
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHH
Confidence            66666555666666546678888899999999999999999999999999999999998899999999999999999999


Q ss_pred             hcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          125 NSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      +..+++       |..|..|+||||+|+     .+.+-|+.-|
T Consensus        88 ~~kadv-------navnehgntplhyacfwgydqiaedli~~g  123 (448)
T KOG0195|consen   88 SRKADV-------NAVNEHGNTPLHYACFWGYDQIAEDLISCG  123 (448)
T ss_pred             HHhccc-------chhhccCCCchhhhhhhcHHHHHHHHHhcc
Confidence            999997       899999999999996     6777787743

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.70  E-value=7.6e-17  Score=124.96  Aligned_cols=125  Identities=20%  Similarity=0.194  Sum_probs=108.9

Q ss_pred             cCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCccc-----------------------CCCCCcHHHHHHhcCCHHHH
Q 030904           31 ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEP-----------------------VEDGDTALHLTCLYGYLPCV   87 (169)
Q Consensus        31 ~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~-----------------------~~~g~~~L~~a~~~~~~~~~   87 (169)
                      ......|.|+||.|+.+.+.++|+.|++. |+|++.+                       -..|..||..|+.-++.+++
T Consensus       178 ~~eeY~GqSaLHiAIv~~~~~~V~lLl~~-gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eiv  256 (782)
T KOG3676|consen  178 TSEEYYGQSALHIAIVNRDAELVRLLLAA-GADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIV  256 (782)
T ss_pred             hhHhhcCcchHHHHHHhccHHHHHHHHHc-CCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHH
Confidence            34566899999999999999999999998 9998852                       12378999999999999999


Q ss_pred             HHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904           88 QLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus        88 ~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      ++|+++|+|++++|.+|+|.||..+..-..++..+++++|++.     +...+|.+|.|||-+|+     ++-+.++++
T Consensus       257 rlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~-----l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  257 RLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANA-----LEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCc-----cccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999999999999999999999998899999999999981     12789999999999997     555555555

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.70  E-value=1.1e-15  Score=105.81  Aligned_cols=122  Identities=34%  Similarity=0.484  Sum_probs=109.7

Q ss_pred             CCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC-----HHHHHHHHHcCC---CCCccCCC
Q 030904           32 SETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGY-----LPCVQLLLERGA---SLEAKDED  103 (169)
Q Consensus        32 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~-----~~~~~~ll~~g~---~~~~~~~~  103 (169)
                      .......++++.++..+....+++++.. +++++.++..|.||||+|+..++     .+++++|+..|+   ..+.++..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLAS-GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHc-CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            3444567899999999999999999988 99999999999999999999999     999999999999   55667999


Q ss_pred             CCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904          104 GAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus       104 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      |.||||+|+..|+.++++.+++.|+++       +.++..|.|+++.|+     ++++.++..
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~~-------~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGADP-------NSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCCC-------cccccCCCcchhhhcccchHHHHHHHHhc
Confidence            999999999999999999999999998       688999999999994     667777664

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.70  E-value=2e-16  Score=94.73  Aligned_cols=76  Identities=32%  Similarity=0.566  Sum_probs=70.7

Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh--
Q 030904           75 LHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN--  152 (169)
Q Consensus        75 L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~--  152 (169)
                      ||+|+..++.+++++|++.+.+++.    |.||||+|+..|+.+++++|++.|+++       +.++..|+||||+|+  
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADI-------NSQDKNGNTALHYAAEN   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCT-------T-BSTTSSBHHHHHHHT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccc-------cccCCCCCCHHHHHHHc
Confidence            7999999999999999999988777    889999999999999999999999998       789999999999995  


Q ss_pred             ---hHHHHhhhc
Q 030904          153 ---DLVSLFIMQ  161 (169)
Q Consensus       153 ---~~~~~li~~  161 (169)
                         +++++|++.
T Consensus        70 ~~~~~~~~Ll~~   81 (89)
T PF12796_consen   70 GNLEIVKLLLEH   81 (89)
T ss_dssp             THHHHHHHHHHT
T ss_pred             CCHHHHHHHHHc
Confidence               999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.69  E-value=2.4e-16  Score=126.86  Aligned_cols=77  Identities=38%  Similarity=0.387  Sum_probs=65.9

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccC--------------CCCCChHHHHHhcChHHHHHHHHhcCCCchhhh
Q 030904           69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKD--------------EDGAIPLHDACAGGFIEIVQLLINSASGTECVK  134 (169)
Q Consensus        69 ~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~--------------~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~  134 (169)
                      ..|.||||+|+..++.+++++|+++|++++.++              ..|.||||.|+..|+.+++++|++.|+++    
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi----  201 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI----  201 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch----
Confidence            358899999999999999999999999888653              25788999999999999999999999887    


Q ss_pred             hhhhcccCCCCCcccchh
Q 030904          135 RMLETVDAEGDTDCDDQN  152 (169)
Q Consensus       135 ~~~~~~~~~g~tpl~~A~  152 (169)
                         +.+|..|+||||+|+
T Consensus       202 ---n~~d~~g~T~Lh~A~  216 (743)
T TIGR00870       202 ---LTADSLGNTLLHLLV  216 (743)
T ss_pred             ---hhHhhhhhHHHHHHH
Confidence               788889999999885

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.68  E-value=5.8e-16  Score=122.79  Aligned_cols=106  Identities=31%  Similarity=0.429  Sum_probs=96.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHH
Q 030904           39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE  118 (169)
Q Consensus        39 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~  118 (169)
                      ..|+.|+..|+.+.++.|++. |++++.+|..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~-Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTG-GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            458899999999999999998 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc-------CCCchhhhhhhhcccCCCCCcccchh
Q 030904          119 IVQLLINS-------ASGTECVKRMLETVDAEGDTDCDDQN  152 (169)
Q Consensus       119 ~~~~ll~~-------~~~~~~~~~~~~~~~~~g~tpl~~A~  152 (169)
                      ++++|+++       |++.       +..+..|.+|+..+.
T Consensus       163 iv~~Ll~~~~~~~~~ga~~-------~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANA-------KPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccCCCC-------CccccCCCCccchhh
Confidence            99999998       6665       567777777776653

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.68  E-value=1.5e-16  Score=118.32  Aligned_cols=131  Identities=28%  Similarity=0.395  Sum_probs=116.0

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcc-------------------------
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDE-------------------------   66 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~-------------------------   66 (169)
                      ++...++.++.+.|++++-.  +..+|||||.|+..|+..++++|+.. |++...                         
T Consensus        83 d~~~e~v~~l~e~ga~Vn~~--d~e~wtPlhaaascg~~~i~~~li~~-gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~  159 (527)
T KOG0505|consen   83 DDNLEMVKFLVENGANVNAQ--DNEGWTPLHAAASCGYLNIVEYLIQH-GANLLAVNSDGNMPYDLAEDEATLDVLETEM  159 (527)
T ss_pred             cccHHHHHHHHHhcCCcccc--ccccCCcchhhcccccHHHHHHHHHh-hhhhhhccCCCCCccccccCcchhHHHHHHH
Confidence            56778999999999999754  56889999999999999999999976 443221                         


Q ss_pred             ----------------------------------cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHH
Q 030904           67 ----------------------------------PVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC  112 (169)
Q Consensus        67 ----------------------------------~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~  112 (169)
                                                        ++..|-|.||+|+..|..++..+|++.|.+++.+|.+|+||||.|+
T Consensus       160 ~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA  239 (527)
T KOG0505|consen  160 ARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAA  239 (527)
T ss_pred             HHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHH
Confidence                                              2333789999999999999999999999999999999999999999


Q ss_pred             hcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh
Q 030904          113 AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN  152 (169)
Q Consensus       113 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~  152 (169)
                      .=|..++.++|+++|++.       +.....|+||+.+|.
T Consensus       240 ~Wg~~~~~elL~~~ga~~-------d~~t~~g~~p~dv~d  272 (527)
T KOG0505|consen  240 HWGQEDACELLVEHGADM-------DAKTKMGETPLDVAD  272 (527)
T ss_pred             HhhhHhHHHHHHHhhccc-------chhhhcCCCCccchh
Confidence            999999999999999998       688999999999995

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.67  E-value=1.5e-16  Score=122.52  Aligned_cols=122  Identities=24%  Similarity=0.278  Sum_probs=113.1

Q ss_pred             CCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHH
Q 030904           32 SETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDA  111 (169)
Q Consensus        32 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a  111 (169)
                      -.+..++|.||.|+.+|+.++.+.|++. .+.++..+..|.+|||+|+..|+.++++.++..+...++.+..|.||||.|
T Consensus        44 ~qd~~gfTalhha~Lng~~~is~llle~-ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhla  122 (854)
T KOG0507|consen   44 LQDYSGFTLLHHAVLNGQNQISKLLLDY-EALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLA  122 (854)
T ss_pred             ccCccchhHHHHHHhcCchHHHHHHhcc-hhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchh
Confidence            3466899999999999999999999988 888888999999999999999999999999999988999999999999999


Q ss_pred             HhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904          112 CAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus       112 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      +++||.+++.+|+.+|+++       -++|..++|++.+|+     +++.+|+++
T Consensus       123 aqhgh~dvv~~Ll~~~adp-------~i~nns~~t~ldlA~qfgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  123 AQHGHLEVVFYLLKKNADP-------FIRNNSKETVLDLASRFGRAEVVQMLLQK  170 (854)
T ss_pred             hhhcchHHHHHHHhcCCCc-------cccCcccccHHHHHHHhhhhHHHHHHhhh
Confidence            9999999999999999999       688999999999995     677777775

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=7.2e-16  Score=114.79  Aligned_cols=106  Identities=25%  Similarity=0.343  Sum_probs=96.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHH
Q 030904           39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE  118 (169)
Q Consensus        39 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~  118 (169)
                      ..|.-|+..|.+++|+..+.+ -.|+...+..|.|+||.|+..||.++|+||++.|+++|+.|.+|+||||+|+..++..
T Consensus       552 aLLLDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchH
Confidence            446789999999999999987 6688888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCchhhhhhhhcccCCCCCcccch
Q 030904          119 IVQLLINSASGTECVKRMLETVDAEGDTDCDDQ  151 (169)
Q Consensus       119 ~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A  151 (169)
                      +++.|++.|+.+      |..+=.++.|+..-+
T Consensus       631 ~ckqLVe~Gaav------fAsTlSDmeTa~eKC  657 (752)
T KOG0515|consen  631 MCKQLVESGAAV------FASTLSDMETAAEKC  657 (752)
T ss_pred             HHHHHHhccceE------Eeeecccccchhhhc
Confidence            999999999988      566667778877655

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.62  E-value=1.9e-15  Score=82.00  Aligned_cols=54  Identities=50%  Similarity=0.773  Sum_probs=40.4

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHH
Q 030904           71 GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI  124 (169)
Q Consensus        71 g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll  124 (169)
                      |.||||+|+..|+.+++++|++.|.+++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            578888888888888888888888888888888888888888888888888875

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.60  E-value=5.1e-16  Score=84.71  Aligned_cols=50  Identities=42%  Similarity=0.648  Sum_probs=20.9

Q ss_pred             CCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHH
Q 030904           62 GSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDA  111 (169)
Q Consensus        62 ~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a  111 (169)
                      .+++.+|..|.||||+|+.+|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            55555666666666666666666666666655666666666666666654

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.60  E-value=4.1e-15  Score=86.64  Aligned_cols=95  Identities=24%  Similarity=0.311  Sum_probs=80.1

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL   91 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll   91 (169)
                      ++-+++.+.+.+ |.+++-   ..-+.+|||+|+..|..+++++|+.. |++++.+|+.|.|||..|+..||.+||++|+
T Consensus        13 G~~DeVk~~v~~-g~nVn~---~~ggR~plhyAAD~GQl~ilefli~i-GA~i~~kDKygITPLLsAvwEGH~~cVklLL   87 (117)
T KOG4214|consen   13 GEIDEVKQSVNE-GLNVNE---IYGGRTPLHYAADYGQLSILEFLISI-GANIQDKDKYGITPLLSAVWEGHRDCVKLLL   87 (117)
T ss_pred             CcHHHHHHHHHc-cccHHH---HhCCcccchHhhhcchHHHHHHHHHh-ccccCCccccCCcHHHHHHHHhhHHHHHHHH
Confidence            444555555554 577653   33677999999999999999999998 9999999999999999999999999999999


Q ss_pred             HcCCCCCccCCCCCChHHHH
Q 030904           92 ERGASLEAKDEDGAIPLHDA  111 (169)
Q Consensus        92 ~~g~~~~~~~~~~~t~l~~a  111 (169)
                      +.|++...+..+|.+.+..+
T Consensus        88 ~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   88 QNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HcCcccceeCCCchhHHhhc
Confidence            99999988888887765544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.59  E-value=1.9e-15  Score=82.43  Aligned_cols=55  Identities=36%  Similarity=0.548  Sum_probs=29.4

Q ss_pred             HHHcC-CCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccch
Q 030904           90 LLERG-ASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQ  151 (169)
Q Consensus        90 ll~~g-~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A  151 (169)
                      |++.| ++++.+|..|.||||+|++.|+.+++++|++.|+++       +.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-------~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-------NAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-------T---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-------CCCcCCCCCHHHhC
Confidence            45666 778888888888888888888888888888888887       78888888888876

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.57  E-value=9.8e-15  Score=112.68  Aligned_cols=145  Identities=17%  Similarity=0.123  Sum_probs=113.0

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER   93 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~   93 (169)
                      ...++.++++..+-+++.+  ..|.+|||+|+..|+.+.++.++.+ +...|.....|.+|||.++.+|+.+++.+|+++
T Consensus        61 ~~~is~llle~ea~ldl~d--~kg~~plhlaaw~g~~e~vkmll~q-~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~  137 (854)
T KOG0507|consen   61 QNQISKLLLDYEALLDLCD--TKGILPLHLAAWNGNLEIVKMLLLQ-TDILNAVNIENETPLHLAAQHGHLEVVFYLLKK  137 (854)
T ss_pred             chHHHHHHhcchhhhhhhh--ccCcceEEehhhcCcchHHHHHHhc-ccCCCcccccCcCccchhhhhcchHHHHHHHhc
Confidence            3457788888878777654  5777899999999999999999888 677888888999999999999999999999999


Q ss_pred             CCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhh-hhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904           94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVK-RMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus        94 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      |++.-.++..+.|++..|++.|..+++++|++......... .--..++-.+.+|+|+|+     ++++.|++.
T Consensus       138 ~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~a  211 (854)
T KOG0507|consen  138 NADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEA  211 (854)
T ss_pred             CCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhc
Confidence            99988889999999999999999999988887632211000 001245566788888884     777777773

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.55  E-value=1.1e-13  Score=95.74  Aligned_cols=111  Identities=29%  Similarity=0.407  Sum_probs=99.7

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCC-----HHHHHHHHHhCCC---CCcccCCCCCcHHHHHHhcCCHH
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGD-----VHSLRLALDNLSG---SIDEPVEDGDTALHLTCLYGYLP   85 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~-----~~~~~~ll~~~~~---~~~~~~~~g~~~L~~a~~~~~~~   85 (169)
                      ...++..+...|.+++.  .+..|.||||+|+..++     .++++.|++. ++   ..+.++..|.||||+|+..++.+
T Consensus        85 ~~~~~~~l~~~~~~~~~--~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~-g~~~~~~~~~~~~g~tpl~~A~~~~~~~  161 (235)
T COG0666          85 DDKIVKLLLASGADVNA--KDADGDTPLHLAALNGNPPEGNIEVAKLLLEA-GADLDVNNLRDEDGNTPLHWAALNGDAD  161 (235)
T ss_pred             cHHHHHHHHHcCCCccc--ccCCCCcHHHHHHhcCCcccchHHHHHHHHHc-CCCCCCccccCCCCCchhHHHHHcCchH
Confidence            44455778888888854  46688899999999999     9999999998 77   66667999999999999999999


Q ss_pred             HHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcC
Q 030904           86 CVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSA  127 (169)
Q Consensus        86 ~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~  127 (169)
                      ++++++..|++++.++..|.|++++|+..++.+++..+++.+
T Consensus       162 ~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         162 IVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999865

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.53  E-value=4.1e-13  Score=84.57  Aligned_cols=109  Identities=34%  Similarity=0.555  Sum_probs=96.4

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      .....++.+.+.+.+.+  ..+..|.+|+|.|+..++.+++++|+.. ++.++..+..+.+|+|+|+..++.+++++|+.
T Consensus        18 ~~~~~i~~li~~~~~~~--~~~~~g~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~   94 (126)
T cd00204          18 GHLEVVKLLLENGADVN--AKDNDGRTPLHLAAKNGHLEIVKLLLEK-GADVNARDKDGNTPLHLAARNGNLDVVKLLLK   94 (126)
T ss_pred             CcHHHHHHHHHcCCCCC--ccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            44578888888888763  3455777999999999999999999998 77888888899999999999999999999999


Q ss_pred             cCCCCCccCCCCCChHHHHHhcChHHHHHHHH
Q 030904           93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLI  124 (169)
Q Consensus        93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll  124 (169)
                      .+.+++..+..+.||++.|...++.+++++|+
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          95 HGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999999999999999998873

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.53  E-value=3e-14  Score=77.17  Aligned_cols=54  Identities=31%  Similarity=0.460  Sum_probs=45.6

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904           37 HLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL   91 (169)
Q Consensus        37 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll   91 (169)
                      |.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~-~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH-GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT-TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            46899999999999999999998 9999999999999999999999999999986

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.48  E-value=5.5e-13  Score=93.07  Aligned_cols=112  Identities=24%  Similarity=0.291  Sum_probs=92.4

Q ss_pred             CCChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCccc-CCCCCcHHHHHHhcCCHHHHHH
Q 030904           11 EDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEP-VEDGDTALHLTCLYGYLPCVQL   89 (169)
Q Consensus        11 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~-~~~g~~~L~~a~~~~~~~~~~~   89 (169)
                      +.+.+....++... -  +.+..++.|.++|..|+.+|+.++++.|++. |+|+|.. +..++||||.|+..|+.+++.+
T Consensus        22 Kndt~~a~~LLs~v-r--~vn~~D~sGMs~LahAaykGnl~~v~lll~~-gaDvN~~qhg~~YTpLmFAALSGn~dvcrl   97 (396)
T KOG1710|consen   22 KNDTEAALALLSTV-R--QVNQRDPSGMSVLAHAAYKGNLTLVELLLEL-GADVNDKQHGTLYTPLMFAALSGNQDVCRL   97 (396)
T ss_pred             cCcHHHHHHHHHHh-h--hhhccCCCcccHHHHHHhcCcHHHHHHHHHh-CCCcCcccccccccHHHHHHHcCCchHHHH
Confidence            45555555555441 1  2334577888999999999999999999998 9998864 6788999999999999999999


Q ss_pred             HHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhc
Q 030904           90 LLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINS  126 (169)
Q Consensus        90 ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~  126 (169)
                      |++.|+.....+.-|+|+-..|+.-|+.+++..+-.+
T Consensus        98 lldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   98 LLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            9999999999999999999999999999988877543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.46  E-value=3.8e-13  Score=93.82  Aligned_cols=106  Identities=23%  Similarity=0.270  Sum_probs=97.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCc-cCCCCCChHHHHHhcChH
Q 030904           39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA-KDEDGAIPLHDACAGGFI  117 (169)
Q Consensus        39 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~~t~l~~a~~~~~~  117 (169)
                      .||..+..+++.+....||.. .-.+|.+|..|.++|..|+..|+.+++++|++.|+|+|. ++..+.|||+.|+-.|+.
T Consensus        14 ~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   14 SPLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             hHHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            679999999999999999987 556899999999999999999999999999999999986 456789999999999999


Q ss_pred             HHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh
Q 030904          118 EIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN  152 (169)
Q Consensus       118 ~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~  152 (169)
                      ++.+.|++.|+.+       ...|.-|+|+-..|+
T Consensus        93 dvcrllldaGa~~-------~~vNsvgrTAaqmAA  120 (396)
T KOG1710|consen   93 DVCRLLLDAGARM-------YLVNSVGRTAAQMAA  120 (396)
T ss_pred             hHHHHHHhccCcc-------ccccchhhhHHHHHH
Confidence            9999999999998       678888999998874

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.41  E-value=9.1e-13  Score=104.78  Aligned_cols=81  Identities=28%  Similarity=0.474  Sum_probs=76.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-
Q 030904           74 ALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-  152 (169)
Q Consensus        74 ~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-  152 (169)
                      .|+.|+..|+.+.+++|+..|++++.+|..|.||||+|+..|+.+++++|+++|+++       +.+|..|.||||+|+ 
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-------n~~d~~G~TpLh~A~~  157 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-------TLLDKDGKTPLELAEE  157 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHH
Confidence            478899999999999999999999999999999999999999999999999999998       799999999999995 


Q ss_pred             ----hHHHHhhhc
Q 030904          153 ----DLVSLFIMQ  161 (169)
Q Consensus       153 ----~~~~~li~~  161 (169)
                          +++++|+..
T Consensus       158 ~g~~~iv~~Ll~~  170 (664)
T PTZ00322        158 NGFREVVQLLSRH  170 (664)
T ss_pred             CCcHHHHHHHHhC
Confidence                899999876

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.40  E-value=2.1e-12  Score=100.79  Aligned_cols=114  Identities=22%  Similarity=0.228  Sum_probs=102.2

Q ss_pred             CChHHHHHHHHhcCCCCcc---------cC---C---------CcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCC
Q 030904           12 DDSEEDNALFEEDGVNMDL---------ES---E---------TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVED   70 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~---------~~---~---------~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~   70 (169)
                      ..+-+.+.+|++.|++++.         .+   .         -+.|-.||..||..++.++++.|+++ |++++.+|..
T Consensus       194 ~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~-gAd~~aqDS~  272 (782)
T KOG3676|consen  194 NRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH-GADPNAQDSN  272 (782)
T ss_pred             hccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc-CCCCCccccC
Confidence            3456688999999999863         11   1         34677899999999999999999998 9999999999


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCC--CCccCCCCCChHHHHHhcChHHHHHHHHhc
Q 030904           71 GDTALHLTCLYGYLPCVQLLLERGAS--LEAKDEDGAIPLHDACAGGFIEIVQLLINS  126 (169)
Q Consensus        71 g~~~L~~a~~~~~~~~~~~ll~~g~~--~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~  126 (169)
                      |+|.||..+.+-..++.+++++.|++  ...+|+.|-|||.+|++.|..++.+.+++.
T Consensus       273 GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  273 GNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99999999999889999999999999  889999999999999999999999999987

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.37  E-value=1.5e-12  Score=104.82  Aligned_cols=142  Identities=23%  Similarity=0.302  Sum_probs=117.6

Q ss_pred             CCChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCccc-CCCCCcHHHHHHhcCCHHHHHH
Q 030904           11 EDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEP-VEDGDTALHLTCLYGYLPCVQL   89 (169)
Q Consensus        11 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~-~~~g~~~L~~a~~~~~~~~~~~   89 (169)
                      ++...+++++++..|+++.  -+++.|++||..|+..|+...++.|+.+ .+++... |+.+.|+|.+||..|+.+++++
T Consensus       766 aggh~e~vellv~rganie--hrdkkgf~plImaatagh~tvV~~llk~-ha~veaQsdrtkdt~lSlacsggr~~vvel  842 (2131)
T KOG4369|consen  766 AGGHREEVELLVVRGANIE--HRDKKGFVPLIMAATAGHITVVQDLLKA-HADVEAQSDRTKDTMLSLACSGGRTRVVEL  842 (2131)
T ss_pred             cCccHHHHHHHHHhccccc--ccccccchhhhhhcccCchHHHHHHHhh-hhhhhhhcccccCceEEEecCCCcchHHHH
Confidence            5677889999999999875  4577889999999999999999999987 7777654 6788999999999999999999


Q ss_pred             HHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904           90 LLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM  160 (169)
Q Consensus        90 ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~  160 (169)
                      |+..|++-..++-...|||.+|...|..+++++|+..|..+..     ..-.+.|-.||.+|.     +.+..|++
T Consensus       843 Ll~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInS-----rtgSklgisPLmlatmngh~~at~~ll~  913 (2131)
T KOG4369|consen  843 LLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINS-----RTGSKLGISPLMLATMNGHQAATLSLLQ  913 (2131)
T ss_pred             HHHhhccccccchhhcCchhhhcCcchHHHHHHHhhccccccc-----ccccccCcchhhhhhhccccHHHHHHhc
Confidence            9999999988888899999999999999999999999977621     223466777777774     55556665

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=3.6e-12  Score=95.44  Aligned_cols=93  Identities=19%  Similarity=0.267  Sum_probs=80.9

Q ss_pred             cCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccC-CCCCChHH
Q 030904           31 ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKD-EDGAIPLH  109 (169)
Q Consensus        31 ~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~-~~~~t~l~  109 (169)
                      ...+..|.|+||.|+..|+.++|+||++. |+++|..|.+||||||.|+.+.+..+++.|.+.|+.+-+.. .++.|+..
T Consensus       577 SqpNdEGITaLHNAiCaghyeIVkFLi~~-ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~e  655 (752)
T KOG0515|consen  577 SQPNDEGITALHNAICAGHYEIVKFLIEF-GANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAE  655 (752)
T ss_pred             CCCCccchhHHhhhhhcchhHHHHHHHhc-CCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhh
Confidence            34577899999999999999999999998 99999999999999999999999999999999999886654 46778875


Q ss_pred             HH--HhcChHHHHHHHH
Q 030904          110 DA--CAGGFIEIVQLLI  124 (169)
Q Consensus       110 ~a--~~~~~~~~~~~ll  124 (169)
                      -+  ...|..+|.++|-
T Consensus       656 KCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  656 KCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             hcchhhhhHHHHHHHHH
Confidence            54  3577888888875

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.33  E-value=2.3e-12  Score=103.71  Aligned_cols=152  Identities=19%  Similarity=0.281  Sum_probs=120.6

Q ss_pred             CCCCCChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHH
Q 030904            8 MMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV-EDGDTALHLTCLYGYLPC   86 (169)
Q Consensus         8 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~~g~~~L~~a~~~~~~~~   86 (169)
                      +.+.+...++++.++..|.+++.......|..||..|...|+.+.++.||+. |.++|..- -..+|.|.+|+..|+.++
T Consensus       863 la~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~-gsdiNaqIeTNrnTaltla~fqgr~ev  941 (2131)
T KOG4369|consen  863 LARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQP-GSDINAQIETNRNTALTLALFQGRPEV  941 (2131)
T ss_pred             hhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcc-cchhccccccccccceeeccccCcchH
Confidence            3456778888999999998888877888888999999999999999999988 77777542 345688888888888888


Q ss_pred             HHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCch----------------------hhhhh------hh
Q 030904           87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTE----------------------CVKRM------LE  138 (169)
Q Consensus        87 ~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~----------------------~~~~~------~~  138 (169)
                      +.+|+.+.+++..+...|-|||.-++..|.+++-+.|+..|++.+                      .+..+      ++
T Consensus       942 v~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~ 1021 (2131)
T KOG4369|consen  942 VFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVR 1021 (2131)
T ss_pred             HHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCcccee
Confidence            888888888888888888888888888888888888888888763                      11222      35


Q ss_pred             cccCCCCCcccchh-----hHHHHhhh
Q 030904          139 TVDAEGDTDCDDQN-----DLVSLFIM  160 (169)
Q Consensus       139 ~~~~~g~tpl~~A~-----~~~~~li~  160 (169)
                      ++|.+|.|+|.+|+     ..+..|++
T Consensus      1022 v~NkkG~T~Lwla~~Gg~lss~~il~~ 1048 (2131)
T KOG4369|consen 1022 VPNKKGCTVLWLASAGGALSSCPILVS 1048 (2131)
T ss_pred             cccCCCCcccchhccCCccccchHHhh
Confidence            78899999999884     55555655

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.20  E-value=3.5e-11  Score=89.10  Aligned_cols=92  Identities=28%  Similarity=0.313  Sum_probs=84.7

Q ss_pred             cchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCccCCCCCChHHHHHh
Q 030904           35 PPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER-GASLEAKDEDGAIPLHDACA  113 (169)
Q Consensus        35 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~-g~~~~~~~~~~~t~l~~a~~  113 (169)
                      ..+.-++.+|+..|+.+.++.+.-. +.+.+.+|.+.+|+||+|+..|+.++++||++. +.+.+.+|+||+|||.-|..
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQ-GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHh-cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            3456678999999999999998888 999999999999999999999999999999987 78999999999999999999


Q ss_pred             cChHHHHHHHHhcC
Q 030904          114 GGFIEIVQLLINSA  127 (169)
Q Consensus       114 ~~~~~~~~~ll~~~  127 (169)
                      ++|.+++++|-+.-
T Consensus       583 F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQ  596 (622)
T ss_pred             cCcHHHHHHHHHHh
Confidence            99999999987653

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.19  E-value=4.6e-10  Score=83.72  Aligned_cols=87  Identities=25%  Similarity=0.355  Sum_probs=79.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChH
Q 030904           39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPV-EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFI  117 (169)
Q Consensus        39 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~  117 (169)
                      ..||.+++.|+.+.+-.||.. |+++|..+ ..|.||||.|++.|+..-+++|+-+|+++.+.|.+|.||+.+|-..||.
T Consensus       135 rQLhasvRt~nlet~LRll~l-GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSL-GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHc-ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCch
Confidence            459999999999999999988 99999887 4599999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 030904          118 EIVQLLINS  126 (169)
Q Consensus       118 ~~~~~ll~~  126 (169)
                      ++.+.|++.
T Consensus       214 ~laeRl~e~  222 (669)
T KOG0818|consen  214 ELAERLVEI  222 (669)
T ss_pred             HHHHHHHHH
Confidence            888777653

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.15  E-value=2.4e-11  Score=95.33  Aligned_cols=95  Identities=28%  Similarity=0.326  Sum_probs=83.8

Q ss_pred             HHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHHHHHHHHcCC
Q 030904           17 DNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV-EDGDTALHLTCLYGYLPCVQLLLERGA   95 (169)
Q Consensus        17 ~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~~g~~~L~~a~~~~~~~~~~~ll~~g~   95 (169)
                      +..++.+.+.+. .+..+..|.++||.++..+..+++++||++ |+++..+| ..|+||||.|..+|+.+++..|+.+|+
T Consensus        33 lk~F~~k~c~n~-anikD~~GR~alH~~~S~~k~~~l~wLlqh-Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~  110 (1267)
T KOG0783|consen   33 LKGFSEKSCQNL-ANIKDRYGRTALHIAVSENKNSFLRWLLQH-GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGR  110 (1267)
T ss_pred             HHHHHHHhhhhh-hhHHHhhccceeeeeeccchhHHHHHHHhc-CceeeeccccccchHhhHhhhhchHHHHHHHHhcCC
Confidence            566777777776 455677899999999999999999999998 99999988 569999999999999999999999999


Q ss_pred             CCCccCCCCCChHHHHHh
Q 030904           96 SLEAKDEDGAIPLHDACA  113 (169)
Q Consensus        96 ~~~~~~~~~~t~l~~a~~  113 (169)
                      ....+|..|.+||...++
T Consensus       111 SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  111 SLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             ceEEecccCCCHHHHHhh
Confidence            999999999999988776

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.07  E-value=7.9e-11  Score=92.57  Aligned_cols=83  Identities=25%  Similarity=0.267  Sum_probs=76.9

Q ss_pred             CCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCC-CCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhccc
Q 030904           63 SIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDE-DGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVD  141 (169)
Q Consensus        63 ~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~-~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  141 (169)
                      -+|.+|..|+++||+++..+..++++||+++|+++..+|. .|+||||.|...|+++++-.|+.+|...       .++|
T Consensus        44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL-------~i~D  116 (1267)
T KOG0783|consen   44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL-------RIKD  116 (1267)
T ss_pred             hhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCce-------EEec
Confidence            4788899999999999999999999999999999999885 7999999999999999999999999887       7999


Q ss_pred             CCCCCcccchh
Q 030904          142 AEGDTDCDDQN  152 (169)
Q Consensus       142 ~~g~tpl~~A~  152 (169)
                      +.|.+||..-+
T Consensus       117 keglsplq~~~  127 (1267)
T KOG0783|consen  117 KEGLSPLQFLS  127 (1267)
T ss_pred             ccCCCHHHHHh
Confidence            99999998653

>PF13606 Ank_3: Ankyrin repeat

Probab=98.95  E-value=1.6e-09  Score=50.96  Aligned_cols=28  Identities=43%  Similarity=0.701  Sum_probs=13.3

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCCC
Q 030904           71 GDTALHLTCLYGYLPCVQLLLERGASLE   98 (169)
Q Consensus        71 g~~~L~~a~~~~~~~~~~~ll~~g~~~~   98 (169)
                      |+||||+|+..|+.+++++|+++|++++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            4444444444444444444444444443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.93  E-value=2.6e-09  Score=51.53  Aligned_cols=31  Identities=42%  Similarity=0.659  Sum_probs=19.2

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCCCccC
Q 030904           71 GDTALHLTCLYGYLPCVQLLLERGASLEAKD  101 (169)
Q Consensus        71 g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~  101 (169)
                      |.||||+|+..++.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5566666666666666666666666665554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.88  E-value=2.9e-09  Score=79.21  Aligned_cols=77  Identities=30%  Similarity=0.406  Sum_probs=70.1

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHh-cCCCchhhhhhhhcccCCCCCc
Q 030904           69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN-SASGTECVKRMLETVDAEGDTD  147 (169)
Q Consensus        69 ~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~g~tp  147 (169)
                      ..+..++++|++.|....++-+.-.|.+++.+|.+.+|+||.|+..|+.+++++|++ .+.++       +.+|++|+||
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~-------~~kDRw~rtP  576 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDP-------DPKDRWGRTP  576 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCC-------ChhhccCCCc
Confidence            445678999999999999998888999999999999999999999999999999997 56777       7999999999


Q ss_pred             ccchh
Q 030904          148 CDDQN  152 (169)
Q Consensus       148 l~~A~  152 (169)
                      |.-|.
T Consensus       577 lDdA~  581 (622)
T KOG0506|consen  577 LDDAK  581 (622)
T ss_pred             chHhH
Confidence            99994

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.87  E-value=2.7e-08  Score=75.76  Aligned_cols=97  Identities=29%  Similarity=0.379  Sum_probs=80.9

Q ss_pred             CcchhHHHHHHHHcCCHHHHHHHHHhCCCC--Cc--ccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHH
Q 030904           34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGS--ID--EPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLH  109 (169)
Q Consensus        34 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~--~~--~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~  109 (169)
                      .+.|. .|..|....+...+-.||.+ |..  ++  .-+.+|+|+||+|++.|+..+.++|+=+|+|+.++|..|+|+|.
T Consensus       622 ~~lgq-qLl~A~~~~Dl~t~~lLLAh-g~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~  699 (749)
T KOG0705|consen  622 EPLGQ-QLLRAVAAEDLQTAILLLAH-GSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALF  699 (749)
T ss_pred             CchHH-HHHHHHHHHHHHHHHHHHhc-cCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhh
Confidence            34453 46667777788888888877 432  22  23577899999999999999999999999999999999999999


Q ss_pred             HHHhcChHHHHHHHHhcCCCchh
Q 030904          110 DACAGGFIEIVQLLINSASGTEC  132 (169)
Q Consensus       110 ~a~~~~~~~~~~~ll~~~~~~~~  132 (169)
                      +|-+.|..+++.+|+++|+..++
T Consensus       700 yar~a~sqec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  700 YARQAGSQECIDVLLQYGCPDEC  722 (749)
T ss_pred             hHhhcccHHHHHHHHHcCCCccc
Confidence            99999999999999999988753

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.86  E-value=1e-08  Score=77.15  Aligned_cols=88  Identities=31%  Similarity=0.405  Sum_probs=75.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHh-CCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChH
Q 030904           39 RDLAAAAQLGDVHSLRLALDN-LSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFI  117 (169)
Q Consensus        39 t~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~  117 (169)
                      .|+|++......+.+...+.. -...++.+|..|.||||.|+.-|+...+..|+..|+++..+++.|++|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            458889888887777665544 2446788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 030904          118 EIVQLLINS  126 (169)
Q Consensus       118 ~~~~~ll~~  126 (169)
                      +++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            888777654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.86  E-value=4.1e-09  Score=49.53  Aligned_cols=28  Identities=39%  Similarity=0.656  Sum_probs=26.6

Q ss_pred             CCCChHHHHHhcChHHHHHHHHhcCCCc
Q 030904          103 DGAIPLHDACAGGFIEIVQLLINSASGT  130 (169)
Q Consensus       103 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~  130 (169)
                      +|+||||+|++.|+.+++++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            5899999999999999999999999987

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.80  E-value=1e-08  Score=49.42  Aligned_cols=28  Identities=39%  Similarity=0.654  Sum_probs=26.9

Q ss_pred             CCCChHHHHHhcChHHHHHHHHhcCCCc
Q 030904          103 DGAIPLHDACAGGFIEIVQLLINSASGT  130 (169)
Q Consensus       103 ~~~t~l~~a~~~~~~~~~~~ll~~~~~~  130 (169)
                      +|.||||+|+..|+.+++++|+++|+++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            5899999999999999999999999998

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.70  E-value=7.4e-08  Score=73.55  Aligned_cols=92  Identities=30%  Similarity=0.369  Sum_probs=60.6

Q ss_pred             CCcchhHHHHHHHHcCCHHHHHHHHHhCCC-CCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHH
Q 030904           33 ETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDA  111 (169)
Q Consensus        33 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~-~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a  111 (169)
                      +.+...+.||+|+..|+-++++++|++... ..+..+..|.|+||-|+..++..++++|.+.|+.....|..|.||-..|
T Consensus       895 ~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~era  974 (1004)
T KOG0782|consen  895 QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERA  974 (1004)
T ss_pred             eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHH
Confidence            344556667777777777777777766222 2344456677777777777777777777777776666667777777777


Q ss_pred             HhcChHHHHHHHH
Q 030904          112 CAGGFIEIVQLLI  124 (169)
Q Consensus       112 ~~~~~~~~~~~ll  124 (169)
                      .+.|+.++..+|-
T Consensus       975 qqa~d~dlaayle  987 (1004)
T KOG0782|consen  975 QQAGDPDLAAYLE  987 (1004)
T ss_pred             HhcCCchHHHHHh
Confidence            7777776666654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.70  E-value=1.7e-07  Score=68.30  Aligned_cols=74  Identities=27%  Similarity=0.297  Sum_probs=64.4

Q ss_pred             CCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHH
Q 030904           33 ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLH  109 (169)
Q Consensus        33 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~  109 (169)
                      +.+.+-  |..||+.|+.+.+++|++. |.++|.+|....+||.+|+..||.+++++|+++|+-...-...|..++.
T Consensus        34 ~~~f~e--lceacR~GD~d~v~~LVet-gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Y  107 (516)
T KOG0511|consen   34 KVPFGE--LCEACRAGDVDRVRYLVET-GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHY  107 (516)
T ss_pred             cCchHH--HHHHhhcccHHHHHHHHHh-CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhh
Confidence            344444  8899999999999999997 9999999999999999999999999999999999987766666765543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.68  E-value=7.8e-08  Score=72.14  Aligned_cols=71  Identities=31%  Similarity=0.321  Sum_probs=65.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCccC-CCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccch
Q 030904           74 ALHLTCLYGYLPCVQLLLERGASLEAKD-EDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQ  151 (169)
Q Consensus        74 ~L~~a~~~~~~~~~~~ll~~g~~~~~~~-~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A  151 (169)
                      -||.+++.++.+.+--|+..|++.|.-+ ..|.||||.|++.|+..-+++|+-+|+++       +.+|.+|.||+.+|
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-------~a~d~~GmtP~~~A  207 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-------GAQDSSGMTPVDYA  207 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC-------CCCCCCCCcHHHHH
Confidence            4788899999998888889999998754 57899999999999999999999999998       89999999999999

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.67  E-value=1.6e-07  Score=62.27  Aligned_cols=65  Identities=31%  Similarity=0.296  Sum_probs=41.4

Q ss_pred             CCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCccCCCCCChHHHHHhcChHHHHHHHHhc
Q 030904           62 GSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG-ASLEAKDEDGAIPLHDACAGGFIEIVQLLINS  126 (169)
Q Consensus        62 ~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g-~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~  126 (169)
                      .++|.+|..|||+++.|+..|+.+.+.||+.+| +.+.+.|..+.+++.+|.+.|..+++..|.+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            345666666666666666666666666666666 56666666666666666666666666666554

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.67  E-value=8.4e-08  Score=73.27  Aligned_cols=113  Identities=26%  Similarity=0.333  Sum_probs=91.5

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCC--CCccCCCCCChHHHHHhcChHH
Q 030904           41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGAS--LEAKDEDGAIPLHDACAGGFIE  118 (169)
Q Consensus        41 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~--~~~~~~~~~t~l~~a~~~~~~~  118 (169)
                      +..|+..+++--+.....+ |.+.-.++.+.++.||+|+.-|+-++|+|++.+|..  .++.+..|.|+||-|+-.++..
T Consensus       870 il~av~~~D~~klqE~h~~-gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLN-GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhc-CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            4456666665445554545 666777888889999999999999999999999853  5778899999999999999999


Q ss_pred             HHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904          119 IVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus       119 ~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      +..+|++.|+..       ..+|.+|.||-.-|-     ++..+|=.+
T Consensus       949 vc~~lvdagasl-------~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  949 VCQLLVDAGASL-------RKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHhcchhh-------eecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            999999999987       688999999998873     666665443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.59  E-value=5.5e-08  Score=78.30  Aligned_cols=96  Identities=29%  Similarity=0.310  Sum_probs=69.9

Q ss_pred             CCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCC
Q 030904           25 GVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDG  104 (169)
Q Consensus        25 g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~  104 (169)
                      +...++......+.++||.|+..|..-.+++|++. ++++|..+..|.+|+|.+...|+...+..++++|++.++.+..|
T Consensus       644 ~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~-ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~  722 (785)
T KOG0521|consen  644 GCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQN-GADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDG  722 (785)
T ss_pred             hhhhccchhhhcccchhhhhhccchHHHHHHHHhc-CCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccC
Confidence            44455554555667778888888887777777777 77788888888888888888887777777777788877777788


Q ss_pred             CChHHHHHhcChHHHHH
Q 030904          105 AIPLHDACAGGFIEIVQ  121 (169)
Q Consensus       105 ~t~l~~a~~~~~~~~~~  121 (169)
                      .+++++|....+.+++-
T Consensus       723 ~~~l~~a~~~~~~d~~~  739 (785)
T KOG0521|consen  723 KLPLDIAMEAANADIVL  739 (785)
T ss_pred             cchhhHHhhhccccHHH
Confidence            88887776555444433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.51  E-value=6.2e-07  Score=65.48  Aligned_cols=73  Identities=25%  Similarity=0.273  Sum_probs=62.5

Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccch
Q 030904           72 DTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQ  151 (169)
Q Consensus        72 ~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A  151 (169)
                      ..-|..||+.|..+.+++|++.|.++|.+|++..+||.+|+--||.+++++|+++|+..+       .-..+|.-++..|
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~-------rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICS-------RDTFDGDRCHYGA  109 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccc-------ccccCcchhhhhh
Confidence            445889999999999999999999999999999999999999999999999999998872       2224555555555

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.44  E-value=7.9e-07  Score=68.03  Aligned_cols=80  Identities=21%  Similarity=0.221  Sum_probs=67.3

Q ss_pred             HHHHHHhcCCCCcc--cCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 030904           17 DNALFEEDGVNMDL--ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG   94 (169)
Q Consensus        17 ~~~~l~~~g~~~~~--~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g   94 (169)
                      ..-+|+.+|-....  ...++.|.|+||.||..|+..+.+.|+=. |+++..+|..|+|+|.||...|..+|++.|+++|
T Consensus       639 t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWy-g~dv~~rda~g~t~l~yar~a~sqec~d~llq~g  717 (749)
T KOG0705|consen  639 TAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWY-GVDVMARDAHGRTALFYARQAGSQECIDVLLQYG  717 (749)
T ss_pred             HHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHh-CccceecccCCchhhhhHhhcccHHHHHHHHHcC
Confidence            34456677765543  33566789999999999999999988865 9999999999999999999999999999999998


Q ss_pred             CCC
Q 030904           95 ASL   97 (169)
Q Consensus        95 ~~~   97 (169)
                      ++-
T Consensus       718 cp~  720 (749)
T KOG0705|consen  718 CPD  720 (749)
T ss_pred             CCc
Confidence            753

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.41  E-value=2.2e-07  Score=74.87  Aligned_cols=77  Identities=32%  Similarity=0.439  Sum_probs=73.3

Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcc
Q 030904           69 EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDC  148 (169)
Q Consensus        69 ~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl  148 (169)
                      ..|.++||.|+..+....+++|+++|++++..|..|+||+|.+...|+......++++|+++       +..+..|.+|+
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-------~a~~~~~~~~l  726 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADP-------NAFDPDGKLPL  726 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccc-------cccCccCcchh
Confidence            55799999999999999999999999999999999999999999999999999999999999       78899999999


Q ss_pred             cchh
Q 030904          149 DDQN  152 (169)
Q Consensus       149 ~~A~  152 (169)
                      ..|.
T Consensus       727 ~~a~  730 (785)
T KOG0521|consen  727 DIAM  730 (785)
T ss_pred             hHHh
Confidence            9984

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.40  E-value=1.3e-06  Score=66.13  Aligned_cols=79  Identities=22%  Similarity=0.309  Sum_probs=63.8

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL   91 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll   91 (169)
                      .+.....+.+... ....+...+..|.||||.|+..|+...++.|+.+ ++++..++..|++|||-|+..|+..++..++
T Consensus        31 ~~~~sl~~el~~~-~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a-~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vl  108 (560)
T KOG0522|consen   31 TDSDSLEQELLAK-VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSA-GADVSIKNNEGWSPLHEAVSTGNEQIITEVL  108 (560)
T ss_pred             cchhhHHHHHhhh-hhceeccccCCCCccHHHHHHhcCHHHHHHHHhc-CCCccccccccccHHHHHHHcCCHHHHHHHH
Confidence            4444555555444 4445556677889999999999999999999999 9999999999999999999999988776655


Q ss_pred             H
Q 030904           92 E   92 (169)
Q Consensus        92 ~   92 (169)
                      .
T Consensus       109 r  109 (560)
T KOG0522|consen  109 R  109 (560)
T ss_pred             H
Confidence            4

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.27  E-value=4e-06  Score=55.78  Aligned_cols=70  Identities=17%  Similarity=0.107  Sum_probs=61.9

Q ss_pred             CcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCC-CCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC
Q 030904           28 MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLS-GSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE   98 (169)
Q Consensus        28 ~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~-~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~   98 (169)
                      .+++..+..|||+++.|+..|..+.+.+|+.. | +.+...|..+.+.+.+|-+.|+.++++.|.+...+-.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgr-g~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets   73 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGR-GVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETS   73 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhcc-CcccccccccccchHHHHHHhcChHHHHHHHHHHhccCC
Confidence            34556788999999999999999999999999 6 8899999999999999999999999999998754433

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.25  E-value=2.3e-06  Score=69.51  Aligned_cols=100  Identities=21%  Similarity=0.209  Sum_probs=77.1

Q ss_pred             cCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHH
Q 030904           31 ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHD  110 (169)
Q Consensus        31 ~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~  110 (169)
                      ....-.+.+.+|.++..+..-.++.+++-.+.....-+.+|...+|.++..|..-.+..+.-.|..++.+|..|+||||+
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            33456788999999999999888888874233444556777788888665554333334344588999999999999999


Q ss_pred             HHhcChHHHHHHHHhcCCCc
Q 030904          111 ACAGGFIEIVQLLINSASGT  130 (169)
Q Consensus       111 a~~~~~~~~~~~ll~~~~~~  130 (169)
                      |..+|+..++..|++.|+++
T Consensus       648 Aa~~G~e~l~a~l~~lga~~  667 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADP  667 (975)
T ss_pred             HhhcCHHHHHHHHHHhcccc
Confidence            99999999999999888776

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.22  E-value=4.6e-06  Score=66.50  Aligned_cols=116  Identities=21%  Similarity=0.137  Sum_probs=90.6

Q ss_pred             HHHHHHcCCHHHHHHHHHhCC---CCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChH
Q 030904           41 LAAAAQLGDVHSLRLALDNLS---GSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFI  117 (169)
Q Consensus        41 l~~a~~~g~~~~~~~ll~~~~---~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~  117 (169)
                      ...|+..|+...++..++...   .++|..|.-|+++|+.|....+.++.++|++.+...       ..+|.+|++.|..
T Consensus        29 fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v  101 (822)
T KOG3609|consen   29 FLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSV  101 (822)
T ss_pred             HHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHH
Confidence            556999999999999998643   357788999999999999999999999999876544       3589999999999


Q ss_pred             HHHHHHHhcCCCchhhhhhh---hcccCCCCCcccchh-----hHHHHhhhccc
Q 030904          118 EIVQLLINSASGTECVKRML---ETVDAEGDTDCDDQN-----DLVSLFIMQQE  163 (169)
Q Consensus       118 ~~~~~ll~~~~~~~~~~~~~---~~~~~~g~tpl~~A~-----~~~~~li~~~~  163 (169)
                      ++++.++.+-..........   ...-..+-||+.+|+     ||+++||.++.
T Consensus       102 ~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen  102 PLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             HHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence            99999998743331100000   123466789999996     99999999764

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.09  E-value=2.2e-06  Score=69.61  Aligned_cols=114  Identities=20%  Similarity=0.029  Sum_probs=84.5

Q ss_pred             CCCChHHHHHHHHhc-CCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHH
Q 030904           10 EEDDSEEDNALFEED-GVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ   88 (169)
Q Consensus        10 ~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~   88 (169)
                      ++.+.+++++.+++. |-.....+.++.|.  +|. |..+..+....++.-.+..++.+|..|+||||||+.+|+..++.
T Consensus       582 a~~lyawLie~~~e~~~~~~~eld~d~qgV--~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a  658 (975)
T KOG0520|consen  582 AELLYAWLIEKVIEWAGSGDLELDRDGQGV--IHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVA  658 (975)
T ss_pred             HHHhHHHHHHHHhcccccCchhhcccCCCh--hhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHH
Confidence            345566677777775 55555555667776  776 55556666666665558889999999999999999999999999


Q ss_pred             HHHHcCCCCCc------cCCCCCChHHHHHhcChHHHHHHHHhc
Q 030904           89 LLLERGASLEA------KDEDGAIPLHDACAGGFIEIVQLLINS  126 (169)
Q Consensus        89 ~ll~~g~~~~~------~~~~~~t~l~~a~~~~~~~~~~~ll~~  126 (169)
                      .|+..|++..+      ....|.|+...|..+|+..+..+|-+.
T Consensus       659 ~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  659 SLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99988765433      234688999999999988777666544

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.07  E-value=2.3e-05  Score=62.65  Aligned_cols=112  Identities=23%  Similarity=0.198  Sum_probs=86.2

Q ss_pred             CChHHHHHHHHhcCC-CCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH
Q 030904           12 DDSEEDNALFEEDGV-NMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLL   90 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~-~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~l   90 (169)
                      ++...+.+.+...+. ..|++-.++.|.++|+.|....+.++.+.|+++ +...       ..+|..|+..+..++++.+
T Consensus        36 gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~-~~~~-------gdALL~aI~~~~v~~VE~l  107 (822)
T KOG3609|consen   36 GDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDT-SSEE-------GDALLLAIAVGSVPLVELL  107 (822)
T ss_pred             CChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcC-cccc-------chHHHHHHHHHHHHHHHHH
Confidence            334444444444333 356677899999999999999999999999988 5443       2588889999999999999


Q ss_pred             HHcCCCCC----------ccCCCCCChHHHHHhcChHHHHHHHHhcCCCch
Q 030904           91 LERGASLE----------AKDEDGAIPLHDACAGGFIEIVQLLINSASGTE  131 (169)
Q Consensus        91 l~~g~~~~----------~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~  131 (169)
                      +.+.....          ..-..+.||+.+|+..++.+|+++|+.+|+.++
T Consensus       108 l~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  108 LVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            98744331          122356799999999999999999999998873

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.55  E-value=0.00015  Score=54.99  Aligned_cols=65  Identities=15%  Similarity=0.118  Sum_probs=46.6

Q ss_pred             HHHHHHHHhcCCCCcc----cCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHh
Q 030904           15 EEDNALFEEDGVNMDL----ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCL   80 (169)
Q Consensus        15 ~~~~~~l~~~g~~~~~----~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~   80 (169)
                      ...++.+.++++..|+    .......-|+||+|+..|..+++.++|+. ++|+..+|..|.||..++..
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Lee-g~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEE-GCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHh-cCCchhcccCCCCccccccc
Confidence            4455666666666554    22334456788888888888888888888 78888888888888887663

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.32  E-value=0.00082  Score=51.24  Aligned_cols=69  Identities=26%  Similarity=0.231  Sum_probs=41.4

Q ss_pred             HHHHHHHHHcCCCCCcc------CCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh--hHH
Q 030904           84 LPCVQLLLERGASLEAK------DEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN--DLV  155 (169)
Q Consensus        84 ~~~~~~ll~~g~~~~~~------~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~--~~~  155 (169)
                      ...+++|.+.+...|..      +.--.|+||+|+..|...++..+|+.|+++       -.+|..|.||+.++.  ++-
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-------~~kd~~Grtpy~ls~nkdVk  476 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDP-------STKDGAGRTPYSLSANKDVK  476 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCc-------hhcccCCCCcccccccHHHH
Confidence            44566666665544321      222446677777777777777777777776       566777777777663  444


Q ss_pred             HHhh
Q 030904          156 SLFI  159 (169)
Q Consensus       156 ~~li  159 (169)
                      +.++
T Consensus       477 ~~F~  480 (591)
T KOG2505|consen  477 SIFI  480 (591)
T ss_pred             HHHH
Confidence            4443

>smart00248 ANK ankyrin repeats

Probab=97.27  E-value=0.0008  Score=29.89  Aligned_cols=21  Identities=43%  Similarity=0.751  Sum_probs=8.2

Q ss_pred             ChHHHHHhcChHHHHHHHHhc
Q 030904          106 IPLHDACAGGFIEIVQLLINS  126 (169)
Q Consensus       106 t~l~~a~~~~~~~~~~~ll~~  126 (169)
                      ||+|+++..++.++++.|++.
T Consensus         4 ~~l~~~~~~~~~~~~~~ll~~   24 (30)
T smart00248        4 TPLHLAAENGNLEVVKLLLDK   24 (30)
T ss_pred             CHHHHHHHcCCHHHHHHHHHc
Confidence            333333333333333333333

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.22  E-value=0.00077  Score=29.96  Aligned_cols=27  Identities=52%  Similarity=0.805  Sum_probs=23.6

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCC
Q 030904           70 DGDTALHLTCLYGYLPCVQLLLERGAS   96 (169)
Q Consensus        70 ~g~~~L~~a~~~~~~~~~~~ll~~g~~   96 (169)
                      .|.+|+|+++..++.++++.|++.+.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            367999999999999999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.32  E-value=0.028  Score=39.05  Aligned_cols=95  Identities=11%  Similarity=0.075  Sum_probs=68.2

Q ss_pred             CcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccC----CCCCcHHHHHHh-c-CCHHHHHHHHHcC-CCCCc---cCCC
Q 030904           34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV----EDGDTALHLTCL-Y-GYLPCVQLLLERG-ASLEA---KDED  103 (169)
Q Consensus        34 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~----~~g~~~L~~a~~-~-~~~~~~~~ll~~g-~~~~~---~~~~  103 (169)
                      ...-++++.++...+..+++.+|+.+....  ..|    ..+.--+.++.. . .+..++++++++| +++|.   +.+.
T Consensus       176 KkdA~~Am~~si~~~K~dva~~lls~f~ft--~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NS  253 (284)
T PF06128_consen  176 KKDAHQAMWLSIGNAKEDVALYLLSKFNFT--KQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNS  253 (284)
T ss_pred             hHHHHHHHHHHhcccHHHHHHHHHhhccee--cchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCC
Confidence            334567788888888889999998763321  212    223334445433 2 3556899999998 67764   4678


Q ss_pred             CCChHHHHHhcChHHHHHHHHhcCCCc
Q 030904          104 GAIPLHDACAGGFIEIVQLLINSASGT  130 (169)
Q Consensus       104 ~~t~l~~a~~~~~~~~~~~ll~~~~~~  130 (169)
                      |.|.|..|.+.++.+++.+|+++|+..
T Consensus       254 GdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  254 GDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             cchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            999999999999999999999999854

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.22  E-value=1.2  Score=25.43  Aligned_cols=47  Identities=17%  Similarity=0.203  Sum_probs=37.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904           39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER   93 (169)
Q Consensus        39 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~   93 (169)
                      ..+..|...|+.++++.+++. + .++      ...+..|+...+-+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~-~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKK-N-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHH-h-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            457889999999999998876 3 222      3578889999899999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=89.57  E-value=1  Score=31.55  Aligned_cols=57  Identities=21%  Similarity=0.247  Sum_probs=45.2

Q ss_pred             HHHHHHHc--CCHHHHHHHHHhCCCCCccc---CCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Q 030904           40 DLAAAAQL--GDVHSLRLALDNLSGSIDEP---VEDGDTALHLTCLYGYLPCVQLLLERGAS   96 (169)
Q Consensus        40 ~l~~a~~~--g~~~~~~~ll~~~~~~~~~~---~~~g~~~L~~a~~~~~~~~~~~ll~~g~~   96 (169)
                      -+-++...  .+..++++.+.++=+++|.+   ..+|.|-|..|..++..+++.+|+++|+-
T Consensus       218 dieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  218 DIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            45555543  45788899998844677753   57899999999999999999999999983

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=85.31  E-value=2.3  Score=24.17  Aligned_cols=48  Identities=19%  Similarity=0.203  Sum_probs=38.5

Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhc
Q 030904           72 DTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINS  126 (169)
Q Consensus        72 ~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~  126 (169)
                      ...+..|...|..++++.+++.+. ++      ..++..|+..-+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~-~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNK-PD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhc-cH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            356889999999999999886541 11      4579999999999999999874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	169
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-10
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-09
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-10
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-09
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-09
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-09
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-09
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		4e-09
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		8e-09
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-09
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		9e-09
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-08
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-08
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-08
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-08
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-08
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-08
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-08
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-08
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-07
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-07
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-07
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-07
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-07
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-07
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		5e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		8e-07
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-06
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		1e-06
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		2e-06
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-06
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		3e-06
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		4e-06
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		6e-06
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		6e-06
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		6e-06
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		7e-06
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		7e-06
1uoh_A	226	Human Gankyrin Length = 226		9e-06
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		9e-06
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-05
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-05
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-05
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		4e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		8e-05
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		8e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		9e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		9e-05
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		9e-05
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		9e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-04
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		1e-04
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-04
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-04
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		2e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-04
2xen_A	91	Structural Determinants For Improved Thermal Stabil		5e-04
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		6e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
           D    TP HL     AA+ G +  ++L L+     ++   ++G T LHL    G+L  V+
Sbjct: 32  DKNGRTPLHL-----AARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVK 85
Query: 89  LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
           LLLE GA + AKD++G  PLH A   G +E+V+LL+ + +
Sbjct: 86  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 23/113 (20%)
Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
           +G T LHL    G+L  V+LLLE GA + AKD++G  PLH A   G +E+V+LL+ + + 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 130 T--------------------ECVKRMLETVDAEGDTDCDDQNDLVSLFIMQQ 162
                                E VK +LE   A  D +  D+N    L +  +
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHLAAR 110

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 32  SETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL 91
             TP HL     AA+ G +  ++L L+     ++   ++G T LHL    G+L  V+LLL
Sbjct: 2   GRTPLHL-----AARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55
Query: 92  ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
           E GA + AKD++G  PLH A   G +E+V+LL+ + +
Sbjct: 56  EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
           D +  TP HL     AA+ G +  + + L      ++   +DG T LHL    G+L  V+
Sbjct: 32  DKDGYTPLHL-----AAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVE 85
Query: 89  LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
           +LL+ GA + AKD+DG  PLH A   G +EIV++L+ + +      +  +T
Sbjct: 86  VLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
           D +  TP HL     AA+ G +  + + L      ++   +DG T LHL    G+L  V+
Sbjct: 44  DKDGYTPLHL-----AAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVE 97
Query: 89  LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
           +LL+ GA + AKD+DG  PLH A   G +EIV++L+ + +      +  +T
Sbjct: 98  VLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 148

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 39  RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
           + L  AA+ G    +R+ + N    ++   +DG T LHL    G+L  V++LL+ GA + 
Sbjct: 4   KKLLEAARAGQDDEVRILMAN-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 99  AKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
           AKD+DG  PLH A   G +EIV++L+ + +
Sbjct: 63  AKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
           DG T LH     G+   V+LL+ +GA + AKD DG  PLH A   G  E+V+LLI+  + 
Sbjct: 69  DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 128
Query: 130 TECVKRMLETVDAEGDTDCD 149
                  + T D++G T  D
Sbjct: 129 -------VNTSDSDGRTPLD 141

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 72  DTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTE 131
            T LHL   Y  +  VQLLL+ GA + AKD+ G +PLH+AC+ G  E+ +LL+   +   
Sbjct: 59  STPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA--- 115
Query: 132 CVKRM 136
           CV  M
Sbjct: 116 CVNAM 120

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
           GDT LHL  LYG+L  V++LL+ GA + A D  G  PLH A   G +EIV++L+   +  
Sbjct: 80  GDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Query: 131 ECVKRMLET 139
               +  +T
Sbjct: 140 NAQDKFGKT 148

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
           DG T LH     G+   V+LL+ +GA + AKD DG  PLH A   G  EIV+LLI+  +
Sbjct: 36  DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 94

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
           D+   TP HL     AA  G +  + + L N    ++     G T LHL   +G+L  V+
Sbjct: 44  DVVGWTPLHL-----AAYWGHLEIVEVLLKN-GADVNAYDTLGSTPLHLAAHFGHLEIVE 97
Query: 89  LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
           +LL+ GA + AKD++G  PLH A   G +EIV++L+   +      +  +T
Sbjct: 98  VLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKT 148

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 39  RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
           R L  AA+ GDV +++      S +  +      T LH    Y  +  V+ LL+ GA + 
Sbjct: 10  RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 69
Query: 99  AKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
           AKD+ G +PLH+AC+ G  E+ +LL+   +
Sbjct: 70  AKDKGGLVPLHNACSYGHYEVAELLVKHGA 99

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
           G T LHL   +G+L  V++LL+ GA + A D DG  PLH A   G++EIV++L+   +  
Sbjct: 80  GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADV 139
Query: 131 ECVKRMLET 139
               +  +T
Sbjct: 140 NAQDKFGKT 148

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 39  RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
           R L  AA+ GDV +++      S +  +      T LH    Y  +  V+ LL+ GA + 
Sbjct: 12  RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 71
Query: 99  AKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
           AKD+ G +PLH+AC+ G  E+ +LL+   +
Sbjct: 72  AKDKGGLVPLHNACSYGHYEVAELLVKHGA 101

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 39  RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
           R L  AA+ GDV +++      S +  +      T LH    Y  +  V+ LL+ GA + 
Sbjct: 14  RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH 73
Query: 99  AKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
           AKD+ G +PLH+AC+ G  E+ +LL+   +
Sbjct: 74  AKDKGGLVPLHNACSYGHYEVAELLVKHGA 103

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
           D + +TP HL     AA+ G    ++L L       +    DG T LHL    G+   V+
Sbjct: 34  DSDGKTPLHL-----AAENGHKEVVKLLLSQ-GADPNAKDSDGKTPLHLAAENGHKEVVK 87
Query: 89  LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDC 148
           LLL +GA   AKD DG  PLH A   G  E+V+LL++  +          T D++G T  
Sbjct: 88  LLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP-------NTSDSDGRTPL 140
Query: 149 D 149
           D
Sbjct: 141 D 141

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
           DG TALH  C+   +  V+ L+E GA++   D +G IPLH A + G+++I + LI+  + 
Sbjct: 72  DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA- 130
Query: 130 TECVKRMLETVDAEGDTDCDDQNDLVSLFIMQQEVN 165
                  +  V++EGDT  D   +     ++Q EVN
Sbjct: 131 ------HVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
           DG T LH     G+   V+LLL +GA   AKD DG  PLH A   G  EIV+LL++  + 
Sbjct: 69  DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 128
Query: 130 TECVKRMLETVDAEGDTDCD 149
                    T D++G T  D
Sbjct: 129 P-------NTSDSDGRTPLD 141

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 39  RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
           + L  AA+ G    +R+ + N    ++     G+T LHL   Y +L  V++LL+ GA + 
Sbjct: 16  KKLLEAARAGQDDEVRILMAN-GADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 99  AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
           A D DG+ PLH A   G +EIV++L+   +      +  +T
Sbjct: 75  AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKT 115

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
           D    TP HL     AA  G +  + + L N    ++     G T LHL    G+L  V+
Sbjct: 44  DFTGWTPLHL-----AAHFGHLEIVEVLLKN-GADVNAKDSLGVTPLHLAARRGHLEIVE 97
Query: 89  LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
           +LL+ GA + A D  G  PLH A   G +EIV++L+ + +      +  +T
Sbjct: 98  VLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKT 148

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 34  TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
            P HL     A Q G    ++  LD+ +   ++    G+T L   C  G+   V LLL+ 
Sbjct: 121 VPLHL-----ACQQGHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGGHHELVALLLQH 174
Query: 94  GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQND 153
           GAS+ A +  G   LH+A     + +V+LL+   +  + + +   T       DC +QN 
Sbjct: 175 GASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTA-----VDCAEQNS 229
Query: 154 LV 155
            +
Sbjct: 230 KI 231

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
           G+T LH+  + G +P V+ LL+ G+    KD  G  PLH+AC  G +++V+LL+      
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH---- 65
Query: 131 ECVKRMLETVDAEGDTDCDD 150
              K ++ T   + D+   D
Sbjct: 66  ---KALVNTTGYQNDSPLHD 82

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++   +DG+T LHL    G+   V+LLL +GA + A+ +DG  P H A   G  EIV+LL
Sbjct: 35  VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
           D +  TP HL     AA  G +  + + L N    ++     G T LHL    G+L  V+
Sbjct: 44  DNDGYTPLHL-----AASNGHLEIVEVLLKN-GADVNASDLTGITPLHLAAATGHLEIVE 97
Query: 89  LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
           +LL+ GA + A D DG  PLH A   G +EIV++L+   +      +  +T
Sbjct: 98  VLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKT 148

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 39  RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
           + L  AA+ G    +R+ + N    ++     G T LHL   YG+L  V++LL+ GA + 
Sbjct: 16  KKLLEAARAGQDDEVRILMAN-GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 99  AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
           A D  G+ PLH A   G +EIV++L+   +           VD  GDT
Sbjct: 75  AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNA-------VDTWGDT 115

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 39  RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
           + L  AA+ G    +R+ + N    ++   EDG T LHL    G+L  V++LL+ GA + 
Sbjct: 16  KKLLEAARAGQDDEVRILMAN-GADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Query: 99  AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
           A+D  G  PLH A   G +EIV++L+   +      +  +T
Sbjct: 75  AEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKT 115

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
           D +  TP HL     AA +G    + + L +    ++    DG T LHL    G+L  V+
Sbjct: 44  DDQGSTPLHL-----AAWIGHPEIVEVLLKH-GADVNARDTDGWTPLHLAADNGHLEIVE 97
Query: 89  LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
           +LL+ GA + A+D  G  PLH A   G +EIV++L+   +      +  +T
Sbjct: 98  VLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKT 148

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
           D   +TP HL     AA++G +  + + L N    ++     G T LHL    G+L  V+
Sbjct: 44  DTYGDTPLHL-----AARVGHLEIVEVLLKN-GADVNALDFSGSTPLHLAAKRGHLEIVE 97
Query: 89  LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
           +LL+ GA + A D  G+ PLH A   G +EIV++L+   +      +  +T
Sbjct: 98  VLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKT 148

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 39  RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
           + L  AA+ G    +R+ + N    ++     G T LHL   YG+L  V++LL+ GA + 
Sbjct: 16  KKLLEAARAGQDDEVRILMAN-GADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 99  AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
           A D  G+ PLH A   G +EIV++L+   +           VD  GDT
Sbjct: 75  AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNA-------VDTWGDT 115

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
           D    TP H+     AA +G +  + + L N    ++    +G T LHL    G+L  V+
Sbjct: 32  DHYGRTPLHM-----AAAVGHLEIVEVLLRN-GADVNAVDTNGTTPLHLAASLGHLEIVE 85
Query: 89  LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
           +LL+ GA + AKD  G  PL+ A   G +EIV++L+   +      +  +T
Sbjct: 86  VLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKT 136

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
           D    TP HL     AA  G +  + + L N    ++     G T L L  L+G+L  V+
Sbjct: 44  DASGWTPLHL-----AAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRLAALFGHLEIVE 97
Query: 89  LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
           +LL+ GA + A D +G  PLH A   G +EIV++L+ + +      +  +T
Sbjct: 98  VLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKT 148

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
           D    TP HL     AA+ G +  + + L      ++     G T LHL    G+L  V+
Sbjct: 44  DWLGHTPLHL-----AAKTGHLEIVEVLL-KYGADVNAWDNYGATPLHLAADNGHLEIVE 97
Query: 89  LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
           +LL+ GA + AKD +G  PLH A   G +EIV++L+   +      +  +T
Sbjct: 98  VLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKT 148

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 49/100 (49%)
Query: 34  TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
           +P  + D+    + G+  ++RL LDN    +++  + G + LH  C  G    V++L+ R
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 94  GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECV 133
           GA +   +     PLH A + G  +IVQ L+   +    V
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 101

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 34  TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
           TP HL     AA  G +  + + L N    ++     G T LHL    G+L  V++LL+ 
Sbjct: 49  TPLHL-----AAYFGHLEIVEVLLKN-GADVNADDSLGVTPLHLAADRGHLEVVEVLLKN 102
Query: 94  GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
           GA + A D +G  PLH A   G +EIV++L+   +      +  +T
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKT 148

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 50  VHSLRLALDNL---SGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAI 106
           +H  +L+L NL     +++    D  + LH  CL G+L CV++LL+ GA +     D   
Sbjct: 12  IHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHT 71
Query: 107 PLHDACAGGFIEIVQLLINSASGTE 131
           PL +AC  G  + V LL+   +  +
Sbjct: 72  PLFNACVSGSWDCVNLLLQHGASVQ 96

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 50  VHSLRLALDNL---SGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAI 106
           +H  +L+L NL     +++    D  + LH  CL G+L CV++LL+ GA +     D   
Sbjct: 68  IHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHT 127
Query: 107 PLHDACAGGFIEIVQLLINSASGTE 131
           PL +AC  G  + V LL+   +  +
Sbjct: 128 PLFNACVSGSWDCVNLLLQHGASVQ 152

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
           + G T LHL    G+L  V++LL+ GA + A D  G  PLH A   G +EIV++L+   +
Sbjct: 78  KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Query: 129 GTECVKRMLET 139
                 +  +T
Sbjct: 138 DVNAQDKFGKT 148

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 39  RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
           + L  AA+ G    +R+ + N    ++     G T LHL  + G+L  V++LL+ GA ++
Sbjct: 16  KKLLEAARAGQDDEVRILIAN-GADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
Query: 99  AKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
           A D  G  PLH A   G +EIV++L+   +
Sbjct: 75  AADVYGFTPLHLAAMTGHLEIVEVLLKYGA 104

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 40  DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA 99
           D+    + G+  ++RL LDN    +++  + G + LH  C  G    V++L+ RGA +  
Sbjct: 3   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 62
Query: 100 KDEDGAIPLHDACAGGFIEIVQLLINSASGTECV 133
            +     PLH A + G  +IVQ L+   +    V
Sbjct: 63  MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 96

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 39  RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
           + L  AA  G    +R+ + N    ++   ++G T LHL    G L  V++LL+ GA + 
Sbjct: 8   KKLLEAAAAGQDDEVRILMAN-GADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN 66
Query: 99  AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKR 135
           A D  G  PLH A   G +EIV++L+   +      R
Sbjct: 67  ASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDR 103

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
           G T LHL    G+L  V++LL+ GA + A D  G  PLH A   G +EIV++L+
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLL 100

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
           G T LHL    G+L  V++LL+ GA + A+D  G  PLH A   G +EIV++L+
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLL 100

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 39  RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL-ERGASL 97
           RD  A+A+L      ++  D  +    E  + G TALH        P V+ L+ E+G++ 
Sbjct: 248 RDQVASAKLLVEKGAKVDYDGAARKDSEKYK-GRTALHYAAQVSNXPIVKYLVGEKGSNK 306
Query: 98  EAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQNDLVSL 157
           + +DEDG  P+  A   G IE+V  LI   +  E V     T  A      ++ +++V +
Sbjct: 307 DKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHT--ARQLAQANNHHNIVDI 364
Query: 158 F 158
           F
Sbjct: 365 F 365

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
           +++ ETP H+     AA+ G     +  L N    ++   +D  T LH     G+   V+
Sbjct: 44  NVKVETPLHM-----AARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLHCAARIGHTNMVK 97
Query: 89  LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKR 135
           LLLE  A+       G  PLH A   G +E V  L+   +   C+ +
Sbjct: 98  LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK 144

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 34  TPPHLRDLAAAAQLGDVHSLRLALDN-LSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92
           TP H+     A  +G++  ++   D  L   +++    G T LHL     +    Q L+E
Sbjct: 74  TPFHI-----ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 93  RGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
            GAS+  KD+   IPLH A + G +++++LL
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 34  TPPHLRDLAAAAQLGDVHSLRLALDN-LSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92
           TP H+     A  +G++  ++   D  L   +++    G T LHL     +    Q L+E
Sbjct: 74  TPFHI-----ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 93  RGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
            GAS+  KD+   IPLH A + G +++++LL
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 34  TPPHLRDLAAAAQLGDVHSLRLALDN-LSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92
           TP H+     A  +G++  ++   D  L   +++    G T LHL     +    Q L+E
Sbjct: 74  TPFHI-----ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128
Query: 93  RGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
            GAS+  KD+   IPLH A + G +++++LL
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 40  DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA 99
           +LA + +L ++    LA  +L+   D+   D  TALH  C  G+   V+ LL+ G  +  
Sbjct: 12  NLAYSGKLEELKESILADKSLATRTDQ---DSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 100 KDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKR 135
           KD+ G  PLH A + G  EIV+ L+   +    V +
Sbjct: 69  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ 104

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
           G T LHL    G+L  V++LL+ GA + A D  G  PLH A   G +EIV++L+
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLL 100

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 40  DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA 99
           +LA + +L ++    LA  +L+   D+   D  TALH  C  G+   V+ LL+ G  +  
Sbjct: 13  NLAYSGKLEELKESILADKSLATRTDQ---DSRTALHWACSAGHTEIVEFLLQLGVPVND 69
Query: 100 KDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKR 135
           KD+ G  PLH A + G  EIV+ L+   +    V +
Sbjct: 70  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ 105

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 40  DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA 99
           +LA + +L ++    LA  +L+   D+   D  TALH  C  G+   V+ LL+ G  +  
Sbjct: 12  NLAYSGKLDELKERILADKSLATRTDQ---DSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 100 KDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKR 135
           KD+ G  PLH A + G  EIV+ L+   +    V +
Sbjct: 69  KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQ 104

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 40  DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA 99
           +LA + +L ++    LA  +L+   D+   D  TALH  C  G+   V+ LL+ G  +  
Sbjct: 12  NLAYSGKLDELKERILADKSLATRTDQ---DSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 100 KDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKR 135
           KD+ G  PLH A + G  EIV+ L+   +    V +
Sbjct: 69  KDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQ 104

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
           G T LHL  + G+L  V++LL+ GA + A    G  PLH A     +EIV++L+   +  
Sbjct: 47  GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 131 ECVKRMLET 139
               +  +T
Sbjct: 107 NAQDKFGKT 115

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 39  RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE 98
           + L  AA+ G    +R+ + N    ++   E G T L+L   +G+L  V++LL+ GA + 
Sbjct: 16  KKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Query: 99  AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
           A D  G  PLH A   G +EI ++L+   +      +  +T
Sbjct: 75  AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKT 115

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
           G+  +H     G+L  +Q LLE  A +  +D +G +PLH A   G + +V+ L+   +  
Sbjct: 70  GNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 131 ECVKRMLETVDAEGDTDCD-----DQNDLVSLF 158
              +      + +GDT CD      +N++VSL 
Sbjct: 130 VGHR------NHKGDTACDLARLYGRNEVVSLM 156

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 67  PVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINS 126
           P ++G TALH     G+   V+ L++ G ++ A D DG  PLH A +   +++ + L+ S
Sbjct: 66  PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 127 ASGT 130
            +  
Sbjct: 126 GAAV 129

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 39  RDLAAAAQLGDVHSLRLALDNLSGSIDEPVED--GDTALHLTCLYGYLPCVQLLLERGAS 96
           + L  AA+ G    +R+ + N     D   ED  G T LHL  +  +L  V++LL+ GA 
Sbjct: 16  KKLLEAARAGQDDEVRILMAN---GADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 97  LEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
           + A D  G  PLH     G +EIV++L+   +      +  +T
Sbjct: 73  VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKT 115

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
           G   +H     G+L  +Q LLE  A +  +D +G +PLH A   G + +V+ L+   +  
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 131 ECVKRMLETVDAEGDTDCD-----DQNDLVSLF 158
              +      + +GDT CD      +N++VSL 
Sbjct: 130 VGHR------NHKGDTACDLARLYGRNEVVSLM 156

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 67  PVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINS 126
           P ++G TALH     G+   V+ L++ G ++ A D DG  PLH A +   +++ + L+ S
Sbjct: 66  PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Query: 127 ASGT 130
            +  
Sbjct: 126 GAAV 129

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 41  LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQL-LLERGASLEA 99
           L+ AA  GDV  +R  L       D     G TAL +  ++G  P V L LL++GAS   
Sbjct: 14  LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGS-PAVALELLKQGASPNV 71
Query: 100 KDEDGAIPLHDACAGGFIEIVQLLI 124
           +D  G  P+HDA   GF++ +++L+
Sbjct: 72  QDASGTSPVHDAARTGFLDTLKVLV 96

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 41  LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQL-LLERGASLEA 99
           L+ AA  GDV  +R  L       D     G TAL +  ++G  P V L LL++GAS   
Sbjct: 12  LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGS-PAVALELLKQGASPNV 69
Query: 100 KDEDGAIPLHDACAGGFIEIVQLLI 124
           +D  G  P+HDA   GF++ +++L+
Sbjct: 70  QDASGTSPVHDAARTGFLDTLKVLV 94

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
           G + LHL   YG+    ++LL  G S +A+ +    PLH A + G   IV++L+   +  
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 131 ECVKRMLETVDAEGDTDCDDQNDLVSLFI 159
              K ML+       T+ + Q ++V L I
Sbjct: 94  NA-KDMLKMTALHWATEHNHQ-EVVELLI 120

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 61  SGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPL-------HDACA 113
           SG++D+    G TALH  CL     C++LLL   AS+E  +E G  PL       H+ C 
Sbjct: 195 SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCE 254
Query: 114 GGFIEIVQLLINSASGTECVKRML 137
               + +    NS    E   R+L
Sbjct: 255 ELLTQALSGRFNSHVHVEYEWRLL 278

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 41  LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
           L+ AA  GDV  +R  L       D     G TAL +  ++G       LL++GAS   +
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQ 64
Query: 101 DEDGAIPLHDACAGGFIEIVQLLI 124
           D  G  P+HDA   GF++ +++L+
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLV 88

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
           G   +H     G+L  +Q LLE  A +  +D +G +PLH A   G + +V+ L+   +  
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 131 ECVKRMLETVDAEGDTDCD-----DQNDLVSL 157
              +      + +GDT CD      +N++VSL
Sbjct: 130 VGHR------NHKGDTACDLARLYGRNEVVSL 155

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
           G   +H     G+L  +Q LLE  A +  +D +G +PLH A   G + +V+ L+   +  
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 131 ECVKRMLETVDAEGDTDCD-----DQNDLVSLF 158
              +      + +GDT CD      +N++VSL 
Sbjct: 130 VGHR------NHKGDTACDLARLYGRNEVVSLM 156

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 41  LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
           L+ AA  GDV  +R  L       D     G TAL +  ++G       LL++GAS   +
Sbjct: 12  LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQ 70
Query: 101 DEDGAIPLHDACAGGFIEIVQLLI 124
           D  G  P+HDA   GF++ +++L+
Sbjct: 71  DTSGTSPVHDAARTGFLDTLKVLV 94

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 41  LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER-GASLEA 99
           L  AA+ G++  LR  LDN  G ++   + G TAL+  C  G+   V+ L  +    L  
Sbjct: 77  LHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 100 KDEDGAIPLHDACAGGFIEIVQLLINSASGTE 131
           +++ G   LH A   G+ +IVQLL+   + T+
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 87  VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETV 140
           V++L+  GA + AKD++G+ PLH A   G +E+V+LL+ + +      +  +T 
Sbjct: 22  VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTA 75

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 87  VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
           V++L+  GA + AKD+DG  PLH A   G +EIV++L+ + +      +  +T
Sbjct: 18  VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 70

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 87  VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
           V++L+  GA + AKD++G+ PLH A   G +E+V+LL+ + +
Sbjct: 40  VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
           G   +H     G L  +Q LLE  A +  +D +G +PLH A   G + +V+ L+   +  
Sbjct: 70  GFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 131 ECVKRMLETVDAEGDTDCD-----DQNDLVSLF 158
              +      + +GDT CD      +N++VSL 
Sbjct: 130 VGHR------NHKGDTACDLARLYGRNEVVSLM 156

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	169
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-19
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-17
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-19
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-09
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-17
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-18
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-17
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-17
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-17
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-10
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-17
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-16
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-13
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-14
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-09
2rfa_A	232	Transient receptor potential cation channel subfa	8e-15
2rfa_A	232	Transient receptor potential cation channel subfa	5e-12
2rfa_A	232	Transient receptor potential cation channel subfa	2e-11
2rfa_A	232	Transient receptor potential cation channel subfa	9e-11
2rfa_A	232	Transient receptor potential cation channel subfa	3e-10
2rfa_A	232	Transient receptor potential cation channel subfa	2e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-04
2etb_A	256	Transient receptor potential cation channel subfam	2e-12
2etb_A	256	Transient receptor potential cation channel subfam	2e-11
2etb_A	256	Transient receptor potential cation channel subfam	2e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-04
2pnn_A	273	Transient receptor potential cation channel subfa	3e-12
2pnn_A	273	Transient receptor potential cation channel subfa	3e-09
2pnn_A	273	Transient receptor potential cation channel subfa	2e-08
2pnn_A	273	Transient receptor potential cation channel subfa	4e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-04

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 80.2 bits (199), Expect = 1e-19
 Identities = 25/82 (30%), Positives = 42/82 (51%)

Query: 44  AAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDED 103
             + G+  ++RL LDN    +++  + G + LH  C  G    V++L+ RGA +   +  
Sbjct: 12  QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG 71

Query: 104 GAIPLHDACAGGFIEIVQLLIN 125
              PLH A + G  +IVQ L+ 
Sbjct: 72  DDTPLHLAASHGHRDIVQKLLQ 93

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 75.5 bits (187), Expect = 6e-18
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           I+      DT LHL   +G+   VQ LL+  A + A +E G +PLH AC  G  ++ + L
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124

Query: 124 IN 125
           + 
Sbjct: 125 VA 126

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 72.9 bits (180), Expect = 6e-17
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           I+   E G+  LH  C +G     + L+  GA +   ++ G +P+  A A     + +  
Sbjct: 98  INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157

Query: 124 IN 125
             
Sbjct: 158 EK 159

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 67.8 bits (167), Expect = 6e-15
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGAS-LEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
            +    +   C  G    V+L L+   + L   D+ G  PLH AC  G   +V++LI 
Sbjct: 3   PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 44.3 bits (106), Expect = 2e-06
 Identities = 6/52 (11%), Positives = 13/52 (25%), Gaps = 6/52 (11%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGG 115
           +    + G+  +            +   + G +L         P  D    G
Sbjct: 131 VSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRI------PYKDTFWKG 176

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 78.6 bits (195), Expect = 2e-19
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 34  TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
                     AA  GDV  +R  L       D     G TAL +   +G       LL++
Sbjct: 4   DRLSG-----AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQ 57

Query: 94  GASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           GAS   +D  G  P+HDA   GF++ +++L+ 
Sbjct: 58  GASPNVQDTSGTSPVHDAARTGFLDTLKVLVE 89

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 74.4 bits (184), Expect = 1e-17
 Identities = 17/64 (26%), Positives = 30/64 (46%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
            +     G + +H     G+L  +++L+E GA +   D  GA+P+H A   G   +V  L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 124 INSA 127
              +
Sbjct: 121 AAES 124

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 67.4 bits (166), Expect = 5e-15
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++ P   G   +HL    G+   V  L    + L  +D  G  PL  A   G  ++V +L
Sbjct: 94  VNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDIL 152

Query: 124 IN 125
             
Sbjct: 153 QG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 55.5 bits (135), Expect = 2e-10
 Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 2/56 (3%)

Query: 71  GDTALHLTCLYGYLPCVQLLLER-GASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
               L      G +  V+ LL R     +A +  G   L      G   I   L+ 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLK 56

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 80.6 bits (200), Expect = 5e-19
 Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 10/114 (8%)

Query: 14  SEEDNALFEEDG--VNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVED 70
           SE D            +  +           AA   GD   +   L+   G  I+    D
Sbjct: 20  SETDLEPPVVKRKKTKVKFDDGAVFL-----AACSSGDTEEVLRLLER--GADINYANVD 72

Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
           G TALH  C+   +  V+ L+E GA++   D +G IPLH A + G+++I + LI
Sbjct: 73  GLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI 126

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 71.0 bits (175), Expect = 2e-15
 Identities = 20/62 (32%), Positives = 30/62 (48%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
                + G TALH+    GY   ++LL++    +  KD DG  PLH A   G  E  ++L
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 124 IN 125
           + 
Sbjct: 252 VE 253

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 70.6 bits (174), Expect = 2e-15
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           I++P  +G   LH     GYL   + L+ +GA + A + +G  PL  A      E++Q  
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

Query: 124 IN 125
           +N
Sbjct: 159 VN 160

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 64.4 bits (158), Expect = 4e-13
 Identities = 14/62 (22%), Positives = 23/62 (37%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++    D + A             Q L     +     + G   LH A A G+ E+++LL
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 124 IN 125
           I 
Sbjct: 219 IQ 220

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 64.1 bits (157), Expect = 5e-13
 Identities = 18/56 (32%), Positives = 25/56 (44%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           D        C  G    V  LLERGA +   + DG   LH AC    +++V+ L+ 
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE 94

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 60.2 bits (147), Expect = 1e-11
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
                  L    G    ++  + +    + K +DGA     AC+ G  E V  L+ 
Sbjct: 7   KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLE 61

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 58.7 bits (143), Expect = 5e-11
 Identities = 13/62 (20%), Positives = 24/62 (38%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++    DG T LH    +G     ++L+E    +EA ++ G      A       + +L 
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284

Query: 124 IN 125
             
Sbjct: 285 KK 286

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 6/57 (10%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
            +GDT L +         +Q  + R         D      +       +  Q L +
Sbjct: 137 SEGDTPLDIAEEEAMEELLQNEVNRQ------GVDIEAARKEEERIMLRDARQWLNS 187

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 79.8 bits (198), Expect = 8e-19
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 15  EEDNALFEEDGVNMDLES-ETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGD 72
           +        + +  D  S  +P H      AA  G   SLR  +    G +++    D  
Sbjct: 41  DFPGIRLLSNPLMGDAVSDWSPMH-----EAAIHGHQLSLRNLISQ--GWAVNIITADHV 93

Query: 73  TALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           + LH  CL G+L CV++LL+ GA +     D   PL +AC  G  + V LL+ 
Sbjct: 94  SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ 146

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 74.5 bits (184), Expect = 1e-16
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           D  + +H     G++ CV  L+  G +++ K      PL+ AC       V+ L+ 
Sbjct: 156 DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 73.3 bits (181), Expect = 2e-16
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 26  VNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLP 85
           V  + +  +P H      AA+ G V  +   +    G+ID  +    T L+L C      
Sbjct: 151 VQPESDLASPIHE-----AARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRA 204

Query: 86  CVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           CV+ LLE GA +  + +    PLH        E+  LL++
Sbjct: 205 CVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMD 243

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 73.3 bits (181), Expect = 3e-16
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++    D  T L   C+ G   CV LLL+ GAS++ +  D A P+H+A   G +E V  L
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSL 176

Query: 124 IN 125
           I 
Sbjct: 177 IA 178

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 64.4 bits (158), Expect = 4e-13
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           +  D+ LH            LL++ GA  +AK+ +G  P+        +  +  L  
Sbjct: 220 KGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLER 275

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 77  LTCLYGYLPCVQLLLERGASLEAKD-----EDGAIPLHDACAGGFIEIVQ-LLINSASG 129
           +   + +      L+ RG+ + + D      DG+ P       G   +   L+ ++ S 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSD 59

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 77.5 bits (192), Expect = 8e-19
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 34  TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
              H       A  G++  L+  L      +++P E G T L     +G +  V+ LLE 
Sbjct: 4   LSIHQ-----LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW 58

Query: 94  GASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
           GA      ++    L  A  GG+ +IV LL+
Sbjct: 59  GADPHILAKERESALSLASTGGYTDIVGLLL 89

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 76.3 bits (189), Expect = 2e-18
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           I+    +G T L       ++ CV+ LL RGA L  + + G  P+  A A G+ ++ Q++
Sbjct: 95  INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154

Query: 124 IN 125
            N
Sbjct: 155 EN 156

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 75.9 bits (188), Expect = 4e-18
 Identities = 19/62 (30%), Positives = 29/62 (46%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
                ++ ++AL L    GY   V LLLER   +   D +G  PL  A  G  ++ V+ L
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121

Query: 124 IN 125
           + 
Sbjct: 122 LA 123

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 66.3 bits (163), Expect = 1e-14
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLE-AKDEDGAIPLHDACAGGFIEIVQLLIN 125
              ++H     G L  ++  L +G +L    DE G  PL  A A G IE V+ L+ 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE 57

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 52.0 bits (126), Expect = 4e-09
 Identities = 9/44 (20%), Positives = 15/44 (34%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIP 107
           +    + G T + L    GY    Q++      L   +   A P
Sbjct: 128 LTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 76.7 bits (190), Expect = 9e-19
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
             G+T LH+  + G +P V+ LL+ G+    KD  G  PLH+AC  G +++V+LL+ 
Sbjct: 8   HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 75.9 bits (188), Expect = 2e-18
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 26  VNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTALHLTCLYGYL 84
              +   ET  H+     A+  GD+ S+   L N  G   +     G T LH  C +G+L
Sbjct: 4   PFTNHRGETLLHI-----ASIKGDIPSVEYLLQN--GSDPNVKDHAGWTPLHEACNHGHL 56

Query: 85  PCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
             V+LLL+  A +         PLHDA   G ++IV+LL+
Sbjct: 57  KVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 73.6 bits (182), Expect = 1e-17
 Identities = 16/65 (24%), Positives = 27/65 (41%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++      D+ LH     G++  V+LLL  GAS  A +  G  P+          ++ L 
Sbjct: 69  VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP 128

Query: 124 INSAS 128
             + S
Sbjct: 129 EKNES 133

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 74.7 bits (185), Expect = 2e-18
 Identities = 27/56 (48%), Positives = 37/56 (66%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           +G T LHL    G+L  V+LLLE GA + AKD++G  PLH A   G +E+V+LL+ 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 72.0 bits (178), Expect = 2e-17
 Identities = 27/61 (44%), Positives = 40/61 (65%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++   ++G T LHL    G+L  V+LLLE GA + AKD++G  PLH A   G +E+V+LL
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

Query: 124 I 124
           +
Sbjct: 88  L 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 37.7 bits (89), Expect = 2e-04
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 69 EDGDTALHLTCLYGYLPCVQLLLERGA 95
          ++G T LHL    G+L  V+LLLE GA
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGA 92

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 76.3 bits (189), Expect = 2e-18
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
                +  ++AL L C  GY   V++LL+ G  +   D +G  PL  A  G  ++ V++L
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121

Query: 124 IN 125
           + 
Sbjct: 122 LE 123

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 75.5 bits (187), Expect = 5e-18
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           I+   E+G T L     +G +  V+ LL+ GA  +   +     L  AC+ G+ +IV++L
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88

Query: 124 IN 125
           ++
Sbjct: 89  LD 90

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 74.3 bits (184), Expect = 1e-17
 Identities = 15/57 (26%), Positives = 28/57 (49%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
            +G T L       ++ CV++LLE GA    + + G   +  A A G+  + Q++ +
Sbjct: 100 WNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 71.3 bits (176), Expect = 2e-16
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
               ++H     G +  +   +E+   +   DE+G  PL  A A G I +V+ L+ 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ 57

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 47.0 bits (113), Expect = 2e-07
 Identities = 6/35 (17%), Positives = 13/35 (37%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDED 103
           + G  ++ L    GY    Q++      L    ++
Sbjct: 133 DSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 74.7 bits (185), Expect = 3e-18
 Identities = 15/55 (27%), Positives = 23/55 (41%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
             D         G L  V+  + +G  +    E G  PLH A   G +EI++ L+
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL 60

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 71.7 bits (177), Expect = 5e-17
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++  +E G   LH     G L  ++ LL +GA + A D+    PL  A   G +  V+LL
Sbjct: 33  VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 92

Query: 124 IN 125
           ++
Sbjct: 93  LS 94

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 63.2 bits (155), Expect = 9e-14
 Identities = 16/58 (27%), Positives = 24/58 (41%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQ 121
           I+ P +   T L      G++ CV+LLL +GA    K  DG              ++Q
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 77.1 bits (191), Expect = 4e-18
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDNLSGS-IDEPVEDGDTALHLTCLYGYLPCVQLLL 91
            TP H+     A  +G++  ++   D      +++    G T LHL     +    Q L+
Sbjct: 73  WTPFHI-----ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127

Query: 92  ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           E GAS+  KD+   IPLH A + G +++++LL  
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 71.3 bits (176), Expect = 7e-16
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 8/100 (8%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92
             P H      A    +   ++  L +    + +  +DG   LH +  +        LL 
Sbjct: 3   NYPLHQ-----ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 57

Query: 93  RGASL---EAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
           +  ++   +  D+ G  P H AC+ G +E+V+ L +    
Sbjct: 58  KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK 97

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 67.5 bits (166), Expect = 1e-14
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGAS-LEAKDEDGAIPLHDACAGGFIEIVQL 122
           +    +     LH     G L  ++LL   G S +  +D+ G  PL  A A G  +   L
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192

Query: 123 LIN 125
           L+ 
Sbjct: 193 LVE 195

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 67.1 bits (165), Expect = 3e-14
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 71  GDTALHLTCLYGYLPCVQ-LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
            +  LH  C+      VQ LL  + + L  KD+DG IPLH + +    EI   L++
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 57

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 58.2 bits (142), Expect = 4e-11
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLER-GASLEAKDEDGAIPLHDACAGGFIEIVQL 122
           ++   + G T L      G+     LL+E+ GA  +  D  GA     A      ++ + 
Sbjct: 167 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKF 223

Query: 123 LIN 125
            +N
Sbjct: 224 FLN 226

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 73.5 bits (182), Expect = 1e-17
 Identities = 27/55 (49%), Positives = 37/55 (67%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
           +G T LHL    G+L  V+LLLE GA + AKD++G  PLH A   G +E+V+LL+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 55

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 73.1 bits (181), Expect = 2e-17
 Identities = 27/61 (44%), Positives = 40/61 (65%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++   ++G T LHL    G+L  V+LLLE GA + AKD++G  PLH A   G +E+V+LL
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

Query: 124 I 124
           +
Sbjct: 121 L 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 72.8 bits (180), Expect = 2e-17
 Identities = 27/62 (43%), Positives = 40/62 (64%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++   ++G T LHL    G+L  V+LLLE GA + AKD++G  PLH A   G +E+V+LL
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

Query: 124 IN 125
           + 
Sbjct: 88  LE 89

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 38.5 bits (91), Expect = 2e-04
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGA 95
           ++G T LHL    G+L  V+LLLE GA
Sbjct: 99  KNGRTPLHLAARNGHLEVVKLLLEAGA 125

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 73.0 bits (180), Expect = 1e-17
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
            D    L      G    V++L+  GA + AKD++G+ PLH A   G +E+V+LL+ 
Sbjct: 22  SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 58.4 bits (142), Expect = 4e-12
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           +    ++G T LHL    G+L  V+LLLE GA + A+D+ G      +   G  ++ ++L
Sbjct: 50  VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 81  YGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           + +      L+ RG+       D    L +A   G  + V++L+ 
Sbjct: 4   HHHHHHSSGLVPRGSH---MGSDLGKKLLEAARAGQDDEVRILMA 45

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 76.4 bits (189), Expect = 2e-17
 Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 7/95 (7%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDN--LSGSIDEPVEDGDTALHLTCLYGYLPCVQLL 90
           +T  HL     A        L   L        +D   + G TALHL  + G    V+ L
Sbjct: 10  DTALHL-----AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 91  LERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
              GA +   +  G   LH AC         +L+ 
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 70.7 bits (174), Expect = 2e-15
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 41  LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
            A  +Q    +      ++    ++    DG T LH+  ++     V+LL + GA L   
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187

Query: 101 DED-GAIPLHDACAGGFIEIVQLLIN 125
           +   G  PLH A       +++LL+ 
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLK 213

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 69.9 bits (172), Expect = 4e-15
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLE---AKDEDGAIPLHDACAGGFIEIVQLLIN 125
           EDGDTALHL  ++ + P +  LL   A  E    +++ G   LH A   G    V+ L  
Sbjct: 7   EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 69.1 bits (170), Expect = 8e-15
 Identities = 17/57 (29%), Positives = 23/57 (40%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
             G T LHL         ++LLL+ GA   A+   G  PL  A       + +LL  
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA 246

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 64.5 bits (158), Expect = 4e-13
 Identities = 10/62 (16%), Positives = 15/62 (24%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
               +  G T L    L       +LL   GA       D   P   + +    +     
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEG 277

Query: 124 IN 125
             
Sbjct: 278 DE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 55.2 bits (134), Expect = 8e-10
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 59  NLSGSIDEPVEDGDTALHLTCLYGYLP-CVQLLLERGASLEAKDEDGAIPLHDACAGGFI 117
            L+ S D   +       +               +    LEA++ DG  PLH A      
Sbjct: 112 YLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA 171

Query: 118 EIVQLLIN 125
           E+V+LL +
Sbjct: 172 EMVRLLRD 179

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 22/108 (20%), Positives = 32/108 (29%), Gaps = 22/108 (20%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTALHLTCLYGYLPCVQLLL 91
           +T  HL     AA LG+  ++        G  +      G TALHL C      C  +LL
Sbjct: 46  QTALHL-----AAILGEASTVEKLYAA--GAGVLVAERGGHTALHLACRVRAHTCACVLL 98

Query: 92  ERGASLEAKDEDGAIP--------------LHDACAGGFIEIVQLLIN 125
           +   S      D  +                 D+      E      +
Sbjct: 99  QPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED 146

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 7/29 (24%), Positives = 9/29 (31%)

Query: 97  LEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
                EDG   LH A        +  L+ 
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLG 30

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 72.8 bits (180), Expect = 2e-17
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           +DG+T LH     G+   V+ LL +GA + A+ +DG  PLH A   G  EIV+LL+ 
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA 63

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 71.3 bits (176), Expect = 6e-17
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++   +DG+T LHL    G+   V+LLL +GA + A+ +DG  P H A   G  EIV+LL
Sbjct: 35  VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

Query: 124 I 124
            
Sbjct: 95  D 95

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 56.2 bits (137), Expect = 3e-11
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLH 109
           ++   +DG+T  HL    G+   V+LL  +GA + A+    +   H
Sbjct: 68  VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 75.4 bits (186), Expect = 2e-17
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 41  LAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA 99
           L  AA  G++  ++ A+         +P E+G TALH          V  L+  GA++ +
Sbjct: 25  LLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNS 82

Query: 100 KDEDGAIPLHDACAGGFIEIVQLLIN 125
            D  G  PLH A +     I   L+ 
Sbjct: 83  PDSHGWTPLHCAASCNDTVICMALVQ 108

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 71.5 bits (176), Expect = 5e-16
 Identities = 16/61 (26%), Positives = 22/61 (36%)

Query: 65  DEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
                +    L    L G L  VQ  ++        +E+G   LH+A  G    IV  LI
Sbjct: 15  RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLI 74

Query: 125 N 125
            
Sbjct: 75  T 75

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 60.4 bits (147), Expect = 8e-12
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKD-EDGAIPLHDA--CAGGFIEIV 120
           ++ P   G T LH             L++ GA++ A    DGA           G+ +  
Sbjct: 80  VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCA 139

Query: 121 QLLIN 125
             L +
Sbjct: 140 TYLAD 144

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 52.6 bits (127), Expect = 4e-09
 Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 3/59 (5%)

Query: 69  EDGDTALHL--TCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
            DG TA         GY  C   L +   S+   +      L D  A    + +     
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF-GDELSFREG 176

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 87  VQLLLERGASLEAKDE---DGAIPLHDACAGGFIEIVQLLIN 125
           ++ +L +  S         +  + L DA   G +E+VQ  + 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVK 42

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 11/90 (12%), Positives = 21/90 (23%), Gaps = 9/90 (10%)

Query: 33  ETPPHLRDLAAAAQLG--DVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLL 90
            T           + G  D  +    L ++  S+         AL       +   +   
Sbjct: 122 ATAFEK---CDPYREGYADCATY---LADVEQSMGLMNSGAVYALWDYS-AEFGDELSFR 174

Query: 91  LERGASLEAKDEDGAIPLHDACAGGFIEIV 120
                ++  +D         A   G    V
Sbjct: 175 EGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 75.6 bits (187), Expect = 2e-17
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 8/96 (8%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDNLSGS---IDEPVEDGDTALHLTCLYGYLPCVQL 89
           +TP H+     A   G++ ++   ++        +D       T LHL  +      V+L
Sbjct: 10  DTPLHI-----AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64

Query: 90  LLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           L+  GAS  A D  G    H AC       ++ L++
Sbjct: 65  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLD 100

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 73.3 bits (181), Expect = 1e-16
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
           + G + L        L  VQLLL+ GA++ A+   G+  LH A   G + +V+ L+
Sbjct: 148 KSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV 203

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 73.3 bits (181), Expect = 2e-16
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++  +  G +ALH     G LP V+ L+  GA    K+     PL  A +   I+I++  
Sbjct: 176 VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGK 235

Query: 124 IN 125
             
Sbjct: 236 AT 237

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 70.2 bits (173), Expect = 2e-15
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKD-EDGAIPLHDACAGGFIEIVQL 122
           ++    DG TALH+         VQLLLERGA ++A D + G  PL  A     + +VQL
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168

Query: 123 LIN 125
           L+ 
Sbjct: 169 LLQ 171

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 69.0 bits (170), Expect = 4e-15
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGAS----LEAKDEDGAIPLHDACAGGFIEI 119
                  G TA HL C +    C++ LL+  A     LEA++ DG   LH A      E 
Sbjct: 72  PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 131

Query: 120 VQLLIN 125
           VQLL+ 
Sbjct: 132 VQLLLE 137

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 68.2 bits (168), Expect = 9e-15
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLER----GASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
           EDGDT LH+  + G LP V  L+      G  L+  +     PLH A       +V+LL+
Sbjct: 7   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66

Query: 125 N 125
            
Sbjct: 67  T 67

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 6/33 (18%), Positives = 10/33 (30%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGAS 96
                   DT L +      +  ++    R AS
Sbjct: 209 SSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 37.4 bits (88), Expect = 8e-04
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 99  AKDEDGAIPLHDACAGGFIEIVQLLIN 125
             DEDG  PLH A   G +  V  L+N
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVN 30

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 73.6 bits (182), Expect = 2e-17
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 5/101 (4%)

Query: 25  GVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYL 84
           G   + E++          AA+ GDV +++      S +  +      T LH    Y  +
Sbjct: 1   GAMGNSEADRQLLE-----AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRV 55

Query: 85  PCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
             V+ LL+ GA + AKD+ G +PLH+AC+ G  E+ +LL+ 
Sbjct: 56  SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 70.1 bits (173), Expect = 6e-16
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           +    + G   LH  C YG+    +LL++ GA +   D     PLH+A A G  EI +LL
Sbjct: 68  VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127

Query: 124 I 124
           +
Sbjct: 128 L 128

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 63.9 bits (157), Expect = 1e-13
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++       T LH     G     +LLL+ GA    K+ DG  PL      G  +I  LL
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLL 159

Query: 124 IN 125
             
Sbjct: 160 RG 161

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 75.0 bits (185), Expect = 2e-17
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           + E  E  D  LH     G L  ++  L+    +   D+ G+  L+ AC GG  +IV++L
Sbjct: 66  VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML 125

Query: 124 IN 125
             
Sbjct: 126 FT 127

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 70.7 bits (174), Expect = 8e-16
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92
            T  +      A   G    + +     +  +++  + GDTALH     GY   VQLLL 
Sbjct: 107 STALYW-----ACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA 161

Query: 93  RGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           +GA  + ++ +  +    A       +++    
Sbjct: 162 KGARTDLRNIEKKLAFDMATNAACASLLKKKQG 194

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 55.3 bits (134), Expect = 4e-10
 Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 12/98 (12%)

Query: 34  TPPHLRD------LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV 87
            PP          +  A    +  +         G I    +  DT        G    +
Sbjct: 3   KPPPKPVKPGQVKVFRALYTFEPRTPDELYIE-EGDIIYITDMSDTNWWKGTSKGRTGLI 61

Query: 88  QLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
                    +  + E    PLH+A   G +  ++  ++
Sbjct: 62  P-----SNYVAEQAESIDNPLHEAAKRGNLSWLRECLD 94

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 54.9 bits (133), Expect = 6e-10
 Identities = 4/52 (7%), Positives = 12/52 (23%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGG 115
            D    +   A  +         ++      A     + +  +   D+    
Sbjct: 166 TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 6/66 (9%), Positives = 15/66 (22%)

Query: 60  LSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEI 119
           +S    +PV+ G   +              L      +    +          + G   +
Sbjct: 1   MSKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL 60

Query: 120 VQLLIN 125
           +     
Sbjct: 61  IPSNYV 66

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 76.0 bits (188), Expect = 2e-17
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 41  LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
              A  L DV  +   L          +    + +H+T   G++  + LLL+   S    
Sbjct: 133 FYHAVMLNDVSIVSYFLSE--IPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN 190

Query: 101 DEDGAIP-LHDACAGGFIEIVQLLIN 125
           +    IP +  A     IE++Q L  
Sbjct: 191 NSLLFIPDIKLAIDNKDIEMLQALFK 216

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 75.6 bits (187), Expect = 3e-17
 Identities = 13/56 (23%), Positives = 23/56 (41%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           + +  LH          V++LL  G      D+ G   L+ A   G ++ V+L + 
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK 116

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 72.6 bits (179), Expect = 5e-16
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 9/95 (9%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTALHLTCLYGYLPCVQLLL 91
           E P H      AA L D   +++ L +  G    +  + G+TAL+     G +  V+L +
Sbjct: 63  EFPLHQ-----AATLEDTKIVKILLFS--GLDDSQFDDKGNTALYYAVDSGNMQTVKLFV 115

Query: 92  ERGASLEAKDEDGAI-PLHDACAGGFIEIVQLLIN 125
           ++   L    + G     + A     + IV   ++
Sbjct: 116 KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS 150

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 66.4 bits (163), Expect = 8e-14
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 40  DLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA 99
           DL+          L+  L   S    +    G +A +       +  V  LL  GA    
Sbjct: 3   DLSRINT-WKSKQLKSFL--SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL 59

Query: 100 KDEDGAIPLHDACAGGFIEIVQLLIN 125
              +   PLH A      +IV++L+ 
Sbjct: 60  L--ENEFPLHQAATLEDTKIVKILLF 83

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 61.8 bits (151), Expect = 4e-12
 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 64  IDEPVEDG-DTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQL 122
           +    + G  T+ +   +   +  V   L    S           +H     G ++++ L
Sbjct: 121 LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMIL 179

Query: 123 LIN 125
           L++
Sbjct: 180 LLD 182

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 54.8 bits (133), Expect = 1e-09
 Identities = 12/103 (11%), Positives = 30/103 (29%), Gaps = 15/103 (14%)

Query: 64  IDEPVEDGDT-ALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQL 122
            +          + L      +  +Q L +   ++ + +        +       EI ++
Sbjct: 187 TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN-------LENVLLDDAEIAKM 239

Query: 123 LINSASGTECVKRMLETVDAEGDTDCDDQNDLVSLFIMQQEVN 165
           +I      E      ++     D D    N L  +    +E+ 
Sbjct: 240 IIE--KHVE-----YKSDSYTKDLDIVKNNKLDEIISKNKELR 275

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 76.8 bits (190), Expect = 2e-17
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 5/100 (5%)

Query: 26  VNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLP 85
           V      +          AA+ G+   L   L  L+ +         T LHL   Y  + 
Sbjct: 18  VLTGEYKKDELLE-----AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVR 72

Query: 86  CVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
            VQLLL+ GA + AKD+ G +PLH+AC+ G  E+ +LL+ 
Sbjct: 73  IVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLK 112

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 73.7 bits (182), Expect = 3e-16
 Identities = 20/62 (32%), Positives = 32/62 (51%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           +    + G   LH  C YG+    +LLL+ GA + A D     PLH+A +   +E+  LL
Sbjct: 84  VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143

Query: 124 IN 125
           ++
Sbjct: 144 LS 145

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 71.8 bits (177), Expect = 1e-15
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++E  +D  T LH+     +   +++L + GA + A D  G   LH A   G ++  +LL
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299

Query: 124 IN 125
           ++
Sbjct: 300 LS 301

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 69.4 bits (171), Expect = 8e-15
 Identities = 11/62 (17%), Positives = 17/62 (27%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++       T LH       +    LLL  GA     +  G   +  A      E +   
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE 176

Query: 124 IN 125
             
Sbjct: 177 FK 178

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 60.6 bits (148), Expect = 1e-11
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++     G TALH   L G+L   +LLL  G+        G             E VQ +
Sbjct: 273 MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQI 327

Query: 124 I 124
           +
Sbjct: 328 L 328

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 50.2 bits (121), Expect = 5e-08
 Identities = 10/86 (11%), Positives = 23/86 (26%), Gaps = 24/86 (27%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEA---------------------KDE 102
                  G +A+ +         +    +  + L+A                     + +
Sbjct: 150 PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ 209

Query: 103 DGAIPLHDACAGGF---IEIVQLLIN 125
                LH A A       ++ +LL+ 
Sbjct: 210 SHETALHCAVASLHPKRKQVAELLLR 235

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 14/58 (24%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACA-GGFIEIVQLLIN 125
           E G +AL L              +  A      E     L +A   G   +++ LL  
Sbjct: 2   EFGKSALDL-------------ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTP 46

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 41.3 bits (98), Expect = 5e-05
 Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 15/84 (17%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDNLSGS-IDEPVEDGDTALHLTCLYGYLPCVQLLL 91
           +T  H      AA  G + + RL L    GS        G TA  +         VQ +L
Sbjct: 281 QTALHR-----AALAGHLQTCRLLLSY--GSDPSIISLQGFTAAQMGNE-----AVQQIL 328

Query: 92  ERGASLEAKDEDGAIPLHDACAGG 115
                +   D D    L +A   G
Sbjct: 329 SESTPMRTSDVDY--RLLEASKAG 350

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 76.8 bits (190), Expect = 3e-17
 Identities = 19/62 (30%), Positives = 32/62 (51%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
            +   + G T LHL    G++P   +L++ G  ++A    G  PLH A   G I++V+ L
Sbjct: 271 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330

Query: 124 IN 125
           + 
Sbjct: 331 LQ 332

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 75.6 bits (187), Expect = 8e-17
 Identities = 19/62 (30%), Positives = 31/62 (50%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
            +   ++G T LH+   +  L  V+LLL RG S  +   +G  PLH A     +E+ + L
Sbjct: 172 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231

Query: 124 IN 125
           + 
Sbjct: 232 LQ 233

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.8 bits (185), Expect = 2e-16
 Identities = 20/62 (32%), Positives = 28/62 (45%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++   +D  T LH     G+   V+LLLE  A+       G  PLH A   G +E V  L
Sbjct: 73  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132

Query: 124 IN 125
           + 
Sbjct: 133 LE 134

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.5 bits (184), Expect = 2e-16
 Identities = 23/62 (37%), Positives = 32/62 (51%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           +D     G T LH+   YG +  V+ LL+  A + AK + G  PLH A   G  +IV LL
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363

Query: 124 IN 125
           + 
Sbjct: 364 LK 365

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.1 bits (183), Expect = 2e-16
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 8/98 (8%)

Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTALHLTCLYGYLPCV 87
                TP H+     A    ++  ++L L    G S   P  +G T LH+      +   
Sbjct: 176 GKNGLTPLHV-----AVHHNNLDIVKLLLPR--GGSPHSPAWNGYTPLHIAAKQNQVEVA 228

Query: 88  QLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           + LL+ G S  A+   G  PLH A   G  E+V LL++
Sbjct: 229 RSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS 266

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.1 bits (183), Expect = 2e-16
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTALHLTCLYGYLPCV 87
                TP H+     AA+ G V ++   L+     S     + G T LH+   YG +   
Sbjct: 110 TTAGHTPLHI-----AAREGHVETVLALLEK--EASQACMTKKGFTPLHVAAKYGKVRVA 162

Query: 88  QLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           +LLLER A   A  ++G  PLH A     ++IV+LL+ 
Sbjct: 163 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 200

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.1 bits (183), Expect = 3e-16
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 8/98 (8%)

Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTALHLTCLYGYLPCV 87
                TP H+     A+ +G +  ++  L    G S +      +T LH+    G+    
Sbjct: 11  GESGLTPLHV-----ASFMGHLPIVKNLLQR--GASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 88  QLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           + LL+  A + AK +D   PLH A   G   +V+LL+ 
Sbjct: 64  KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE 101

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.1 bits (183), Expect = 3e-16
 Identities = 23/63 (36%), Positives = 31/63 (49%)

Query: 63  SIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQL 122
           S     E G T LH+    G+LP V+ LL+RGAS    +     PLH A   G  E+ + 
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY 65

Query: 123 LIN 125
           L+ 
Sbjct: 66  LLQ 68

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.8 bits (177), Expect = 2e-15
 Identities = 19/65 (29%), Positives = 28/65 (43%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++   + G + LH     G+   V LLL+ GAS      DG  PL  A   G+I +  +L
Sbjct: 337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396

Query: 124 INSAS 128
                
Sbjct: 397 KVVTD 401

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 93  RGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
            G S     E G  PLH A   G + IV+ L+ 
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQ 35

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.0 bits (105), Expect = 6e-06
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 21/107 (19%)

Query: 26  VNM-DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTALHLTCLYGY 83
           VN       +P H      AAQ G    + L L N  G S +E   DG T L +    GY
Sbjct: 337 VNAKTKLGYSPLHQ-----AAQQGHTDIVTLLLKN--GASPNEVSSDGTTPLAIAKRLGY 389

Query: 84  LPCVQLL---LERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSA 127
           +    +L    +  + +   D+                 V  +++ +
Sbjct: 390 ISVTDVLKVVTDETSFVLVSDKHRMSFPE---------TVDEILDVS 427

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 74.1 bits (183), Expect = 3e-17
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 23  EDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYG 82
               ++  E ETP        AA+  D  +L   L++    +D   E+G TAL      G
Sbjct: 35  YIAADVVSEYETPWWT-----AARKADEQALSQLLED--RDVDAVDENGRTALLFVAGLG 87

Query: 83  YLPCVQLLLERGASLEAKD-EDGAIPLHDACAGGFIEIVQLLI 124
              CV+LL E GA L+ +D   G   LH A      E+V+ L+
Sbjct: 88  SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 130

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 68.7 bits (169), Expect = 3e-15
 Identities = 17/56 (30%), Positives = 23/56 (41%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
             G TALH+   Y     V+ L+E GA +E +DE G   L  A            +
Sbjct: 108 RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 163

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 54.0 bits (131), Expect = 8e-10
 Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 3/58 (5%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSA 127
           +G     +    G+ P         A + ++ E    P   A      + +  L+   
Sbjct: 13  EGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYET---PWWTAARKADEQALSQLLEDR 67

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 37.5 bits (88), Expect = 6e-04
 Identities = 8/38 (21%), Positives = 13/38 (34%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKD 101
           I+   E G TAL L             ++ G  +  + 
Sbjct: 136 IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 73.3 bits (181), Expect = 3e-17
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 60  LSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEI 119
           +  +    +E     L      G +  V+ LLE GA+  A +  G  P+     G    +
Sbjct: 1   MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGS-ARV 59

Query: 120 VQLLIN 125
            +LL+ 
Sbjct: 60  AELLLL 65

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 70.6 bits (174), Expect = 3e-16
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 11/105 (10%)

Query: 23  EDGVNMDLES-ETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTALHLTCL 80
           E      +E          LA AA  G V  +R  L+   G + + P   G   + +   
Sbjct: 2   EPAAGSSMEPSADW-----LATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM- 53

Query: 81  YGYLPCVQLLLERGASLEAKDEDGA-IPLHDACAGGFIEIVQLLI 124
            G     +LLL  GA     D      P+HDA   GF++ + +L 
Sbjct: 54  MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH 98

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 66.7 bits (164), Expect = 8e-15
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 64  IDEPVEDGDT-ALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQL 122
            +       T  +H     G+L  + +L   GA L+ +D  G +P+  A   G  ++ + 
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 129

Query: 123 LIN 125
           L  
Sbjct: 130 LRA 132

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 51.3 bits (124), Expect = 5e-09
 Identities = 8/57 (14%), Positives = 14/57 (24%), Gaps = 5/57 (8%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIV 120
           +D     G   + L    G+    + L          +           A G  +I 
Sbjct: 104 LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSN-----HARIDAAEGPSDIP 155

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 74.4 bits (184), Expect = 4e-17
 Identities = 16/62 (25%), Positives = 33/62 (53%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++   + G T +     Y ++  V+LLL +G+ +  +D +  I LH A   G ++I ++L
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163

Query: 124 IN 125
           + 
Sbjct: 164 LA 165

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 74.0 bits (183), Expect = 6e-17
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
                ++  + LH     G++    +L++ GA+++   ED   PL +A     +E V+ L
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 124 IN 125
           I 
Sbjct: 64  IK 65

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 73.6 bits (182), Expect = 9e-17
 Identities = 22/61 (36%), Positives = 32/61 (52%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ID   ED  T L       +L  V+ L++ GA ++ KD +G+  LH A   G  E+VQ L
Sbjct: 37  IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYL 96

Query: 124 I 124
           +
Sbjct: 97  L 97

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 73.2 bits (181), Expect = 1e-16
 Identities = 14/61 (22%), Positives = 24/61 (39%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           +      GD+ LH+        CV L L R + +  K+++G  PL  A     +     +
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229

Query: 124 I 124
            
Sbjct: 230 S 230

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 70.9 bits (175), Expect = 1e-15
 Identities = 15/62 (24%), Positives = 25/62 (40%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           I+    + +  LH     G +   ++LL     L A +  G  PLH A      + V L 
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196

Query: 124 IN 125
           ++
Sbjct: 197 LS 198

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 69.7 bits (172), Expect = 3e-15
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGAS-LEAKDEDGAIPLHDACAGGFIEIVQL 122
           +D    +G T LHL    G+   VQ LL  G   +  +D+ G  P+  A     +++V+L
Sbjct: 70  VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129

Query: 123 LIN 125
           L++
Sbjct: 130 LLS 132

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 74.2 bits (183), Expect = 6e-17
 Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 8/101 (7%)

Query: 26  VNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTALHLTCLYGYL 84
           V  +              ++  G+   ++  +          P ++G TALH     G+ 
Sbjct: 31  VKFNPLPLALLLD-----SSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHNAVCAGHT 83

Query: 85  PCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
             V+ L++ G ++ A D DG  PLH A +   +++ + L+ 
Sbjct: 84  EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 65.7 bits (161), Expect = 7e-14
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDG---AIPLHDACAGGFIEIV 120
           ++    DG T LH       +   + L+E GA++ A        A    +    G+ +  
Sbjct: 96  VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 155

Query: 121 QLLIN 125
           Q L  
Sbjct: 156 QFLYG 160

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 61.5 bits (150), Expect = 3e-12
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 1/59 (1%)

Query: 67  PVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           P   G  +L               +  G  ++         L D+   G  ++VQ +I 
Sbjct: 1   PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIY 58

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 52.2 bits (126), Expect = 7e-09
 Identities = 8/50 (16%), Positives = 12/50 (24%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEI 119
                       GY  C Q L      +   ++     L D       E+
Sbjct: 138 QTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL 187

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 74.0 bits (183), Expect = 6e-17
 Identities = 12/62 (19%), Positives = 24/62 (38%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           +    +     +     YG     + L+E G  +   D++    LH A     I++V+  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 124 IN 125
           I+
Sbjct: 62  IS 63

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 72.9 bits (180), Expect = 2e-16
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
             +TALH   L G    + LLLE GA+++A++  G   L  A     + ++  L  
Sbjct: 176 HKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE 231

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 70.9 bits (175), Expect = 9e-16
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDED-GAIPLHDACAGGFIEIVQL 122
           + +P ++  T LH   +   +  V+  + +GA ++    D  + PLH A   G + +V  
Sbjct: 35  VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ 94

Query: 123 LIN 125
           L+ 
Sbjct: 95  LMK 97

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 70.5 bits (174), Expect = 1e-15
 Identities = 18/56 (32%), Positives = 24/56 (42%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
           +   T LH     G+L  V  L++ GA     D +G   +H A   G   IV  LI
Sbjct: 74  DLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI 129

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 70.2 bits (173), Expect = 2e-15
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGF-IEIVQL 122
                 +G + +HL   +G+   V  L+ +G  ++  D++G  PL  A      ++  +L
Sbjct: 102 PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161

Query: 123 LIN 125
           L+ 
Sbjct: 162 LLT 164

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 66.7 bits (164), Expect = 3e-14
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 64  IDEPVEDGDTALHLTCLYGY-LPCVQLLLERGASLEAKDE-DGAIPLHDACAGGFIEIVQ 121
           +D   ++G T L       + +   +LLL    S+   D+      LH A   G   ++ 
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194

Query: 122 LLIN 125
           LL+ 
Sbjct: 195 LLLE 198

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 40.5 bits (96), Expect = 7e-05
 Identities = 7/38 (18%), Positives = 14/38 (36%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKD 101
           +D     G++AL L      +  +  L E   +    +
Sbjct: 203 VDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 75.3 bits (186), Expect = 7e-17
 Identities = 11/62 (17%), Positives = 27/62 (43%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           +D   + G++ LH   L  +       +E G  +  +D +  +PL+ +     + + + L
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKEL 263

Query: 124 IN 125
           + 
Sbjct: 264 LQ 265

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.5 bits (184), Expect = 1e-16
 Identities = 14/62 (22%), Positives = 27/62 (43%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
             +  ++    +H+    G    V+ L+E G S   ++  G   LH AC  G ++  + L
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL 72

Query: 124 IN 125
            +
Sbjct: 73  AS 74

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 70.7 bits (174), Expect = 4e-15
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 64  IDEPVEDGDTALHLTCLYG--YLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQ 121
                  G TALH     G  YL  +++L++ GAS  AKD+    PL  A      E + 
Sbjct: 131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALD 190

Query: 122 LLINSASGTECVKRMLETVDAEGDT 146
           L++++      ++  L+  + +G++
Sbjct: 191 LMMDTVPSKSSLR--LDYANKQGNS 213

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 69.9 bits (172), Expect = 7e-15
 Identities = 8/78 (10%), Positives = 21/78 (26%)

Query: 48  GDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIP 107
            DV  ++    +   ++          +           +QLL E+   +      GA  
Sbjct: 267 TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGG 326

Query: 108 LHDACAGGFIEIVQLLIN 125
                      + ++ + 
Sbjct: 327 AVKRKKKAAPAVKRMKLA 344

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 66.8 bits (164), Expect = 7e-14
 Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 13/111 (11%)

Query: 19  ALFEEDGVNM---DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTA 74
           ++ +   +N    D E+    H+     AA+ G    +R  ++   G S       G TA
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHV-----AARKGQTDEVRRLIET--GVSPTIQNRFGCTA 56

Query: 75  LHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           LHL C +G +   + L   G         G  P+H A      ++V  L+ 
Sbjct: 57  LHLACKFGCVDTAKYLASVGEVHSLW--HGQKPIHLAVMANKTDLVVALVE 105

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.0 bits (141), Expect = 9e-11
 Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 6/57 (10%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
             G   +HL  +      V  L+E         E G +P          E+ ++  +
Sbjct: 82  WHGQKPIHLAVMANKTDLVVALVEGAK------ERGQMPESLLNECDEREVNEIGSH 132

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 9/75 (12%), Positives = 21/75 (28%), Gaps = 13/75 (17%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE-------------AKDEDGAIPLHD 110
           ++    +    L+L+     +   + LL++                           +  
Sbjct: 237 VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPA 296

Query: 111 ACAGGFIEIVQLLIN 125
           A      E++QLL  
Sbjct: 297 AADPSKQEVLQLLQE 311

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.9 bits (128), Expect = 6e-09
 Identities = 9/81 (11%), Positives = 18/81 (22%), Gaps = 6/81 (7%)

Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
            +             AA       L+L  + L   +   +  G                +
Sbjct: 287 RVVWLDFVPA-----AADPSKQEVLQLLQEKLD-EVVRSLNTGAGGAVKRKKKAAPAVKR 340

Query: 89  LLLERGASLEAKDEDGAIPLH 109
           + L   A +  +    A    
Sbjct: 341 MKLAPSAPVRTRSRSRARSSA 361

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 74.3 bits (182), Expect = 9e-17
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 27  NMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPC 86
           N     ET  HL     +     +H +   + N SG++D+    G TALH  CL     C
Sbjct: 164 NGHEPDETALHL--AVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCLTDNAEC 220

Query: 87  VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
           ++LLL   AS+E  +E G  PL  A         +LL  + SG
Sbjct: 221 LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 53.5 bits (128), Expect = 3e-09
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 69  EDGDTALHLTCLYG---YLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           E  +TALHL         L  V  L++   +L+ +   G+  LH  C     E ++LL+ 
Sbjct: 167 EPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR 226

Query: 126 SASGTECVKRMLET 139
             +  E      ET
Sbjct: 227 GKASIEIANESGET 240

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 72.8 bits (180), Expect = 9e-17
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 12/101 (11%)

Query: 25  GVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYL 84
           G +MD   E    +       +     +L           +       T L + C+ G  
Sbjct: 1   GSHMDKNGEIVEKI-----KDEKSINQNLDF-------LRNYRDSYNRTPLMVACMLGME 48

Query: 85  PCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
             +  L+E    LE KD +G+  L  A     + I + L++
Sbjct: 49  NAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS 89

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 70.5 bits (174), Expect = 6e-16
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++     G T L  + ++GY      LLE GA++  ++ +G  PL  A   G  EIV+ L
Sbjct: 94  VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153

Query: 124 I 124
           +
Sbjct: 154 L 154

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 70.1 bits (173), Expect = 8e-16
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           +++   +G TAL        L   + LL +G+++  KD  G  PL  +   G+ E+   L
Sbjct: 61  LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFL 120

Query: 124 I 124
           +
Sbjct: 121 L 121

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 68.6 bits (169), Expect = 4e-15
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           +++   +G+T L +   YG    V+ LLE GA + A+D  G      A   G  E++++ 
Sbjct: 127 VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186

Query: 124 I 124
            
Sbjct: 187 T 187

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 72.0 bits (178), Expect = 1e-16
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++     G T L L  L+G+L  V++LL+ GA + A D +G  PLH A   G +EIV++L
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132

Query: 124 IN 125
           + 
Sbjct: 133 LK 134

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 70.9 bits (175), Expect = 3e-16
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++     G T LHL    G+L  V++LL+ GA + A D  G  PL  A   G +EIV++L
Sbjct: 40  VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99

Query: 124 IN 125
           + 
Sbjct: 100 LK 101

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 70.1 bits (173), Expect = 7e-16
 Identities = 19/56 (33%), Positives = 28/56 (50%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           D    L      G    V++L+  GA + A+D  G  PLH A   G +EIV++L+ 
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK 68

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 68.5 bits (169), Expect = 3e-15
 Identities = 17/61 (27%), Positives = 34/61 (55%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++    +G T LHL  ++G+L  V++LL+ GA + A+D+ G      +   G  ++ ++L
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

Query: 124 I 124
            
Sbjct: 166 Q 166

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 73.4 bits (181), Expect = 1e-16
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 23  EDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYG 82
               ++  E ETP        AA+  D  +L   L++    +D   E+G TAL      G
Sbjct: 36  YIAADVVSEYETPWWT-----AARKADEQALSQLLED--RDVDAVDENGRTALLFVAGLG 88

Query: 83  YLPCVQLLLERGASLEAKD-EDGAIPLHDACAGGFIEIVQLLI 124
              CV+LL E GA L+ +D   G   LH A      E+V+ L+
Sbjct: 89  SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 5/85 (5%)

Query: 41  LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
                + G   S   +      + D  V + +T             +  LLE    ++A 
Sbjct: 19  YLIEWKDGHSPSWVPSSYI---AADV-VSEYETPWWTAARKADEQALSQLLE-DRDVDAV 73

Query: 101 DEDGAIPLHDACAGGFIEIVQLLIN 125
           DE+G   L      G  + V+LL  
Sbjct: 74  DENGRTALLFVAGLGSDKCVRLLAE 98

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 68.8 bits (169), Expect = 6e-15
 Identities = 17/56 (30%), Positives = 23/56 (41%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
             G TALH+   Y     V+ L+E GA +E +DE G   L  A            +
Sbjct: 109 RGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 164

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 51.1 bits (123), Expect = 2e-08
 Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 3/58 (5%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSA 127
           +G     +    G+ P         A + ++ E    P   A      + +  L+   
Sbjct: 14  EGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQALSQLLEDR 68

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 46.1 bits (110), Expect = 8e-07
 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           I+   E G TAL L             ++ G  +  +     I + +     + E+ +++
Sbjct: 137 IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK---VINVLEGQVFEYAEVDEIV 193

Query: 124 I 124
            
Sbjct: 194 E 194

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 13/91 (14%), Positives = 19/91 (20%), Gaps = 16/91 (17%)

Query: 25  GVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYL 84
           G  + LE         +             +               G    +L       
Sbjct: 167 GRRIGLEKVIN-----VLEGQVFEYAEVDEIVEKR---------GKGKDVEYLVRWKDGG 212

Query: 85  PCVQLLLERGASLEAKDEDGAIPLHDACAGG 115
            C  +     A   AKD +    L  A A  
Sbjct: 213 DCEWVKGVHVAEDVAKDYEDG--LEYAVAES 241

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 71.3 bits (176), Expect = 2e-16
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
            D     G   +H     G+L  +Q LLE  A +  +D +G +PLH A   G + +V+ L
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122

Query: 124 I 124
           +
Sbjct: 123 V 123

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 68.2 bits (168), Expect = 2e-15
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++     G TAL +    G     + LL RGA+ + KD  G   +HDA   GF++ +Q L
Sbjct: 31  VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTL 89

Query: 124 I 124
           +
Sbjct: 90  L 90

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 67.0 bits (165), Expect = 8e-15
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGAS-LEAKDEDGAIPLHDACAGGFIEIVQL 122
           ++    +G+  LHL    G+L  V+ L++  AS +  ++  G      A   G  E+V L
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155

Query: 123 LIN 125
           +  
Sbjct: 156 MQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 66.3 bits (163), Expect = 2e-14
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           E     L      G L  +  LL+   ++ A++  G   L      G  EI + L+ 
Sbjct: 3   EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLL 58

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 37.7 bits (89), Expect = 5e-04
 Identities = 12/27 (44%), Positives = 13/27 (48%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGA 95
             GDTA  L  LYG    V L+   GA
Sbjct: 135 HKGDTACDLARLYGRNEVVSLMQANGA 161

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 71.7 bits (177), Expect = 3e-16
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           +DE   +G+T L++      +   + L++RGA +  ++     P   A A G  EI+  +
Sbjct: 32  VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91

Query: 124 IN 125
           + 
Sbjct: 92  LK 93

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 69.0 bits (170), Expect = 3e-15
 Identities = 12/57 (21%), Positives = 22/57 (38%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
            +    L            ++L +    ++  D +G  PL+ A     IEI + LI+
Sbjct: 4   YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 67.1 bits (165), Expect = 1e-14
 Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGAS-LEAKDEDGAIPLHDACAGGFIEIVQL 122
           I+      D+        G    +  +L+     L   +  G   L  A   G I+ V+L
Sbjct: 65  INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKL 124

Query: 123 LIN 125
           L+ 
Sbjct: 125 LLE 127

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 64.4 bits (158), Expect = 2e-13
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 64  IDEPVEDGDTALHLTCLY-----GYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE 118
           ID   + G TAL            Y   V+LL+E GA    KD  G   +  A   G+ E
Sbjct: 133 IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTE 192

Query: 119 IVQLLI 124
           I ++L 
Sbjct: 193 ISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 60.5 bits (148), Expect = 4e-12
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 41  LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG-ASLEA 99
              A   G    L   L + +  +++    G  AL      G++  V+LLLE G   ++ 
Sbjct: 76  YLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF 135

Query: 100 KDEDGAIPLHDACAG-----GFIEIVQLLIN 125
           +++ G   L +A         + +IV+LL+ 
Sbjct: 136 QNDFGYTALIEAVGLREGNQLYQDIVKLLME 166

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 72.9 bits (180), Expect = 3e-16
 Identities = 13/62 (20%), Positives = 26/62 (41%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
                ++G T   L  + G +  ++L L +GA +   D  G     +A   G ++ ++ L
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 124 IN 125
             
Sbjct: 125 YK 126

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 71.3 bits (176), Expect = 1e-15
 Identities = 17/57 (29%), Positives = 28/57 (49%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           E G T LH          V+LLL  GA    + ++GA P   A   G +++++L ++
Sbjct: 37  EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS 93

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 67.1 bits (165), Expect = 4e-14
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLER-GASLEAKDEDGAIPLHDACAGGFIEIVQL 122
           ++   E G T L L     +L  VQ LLE+    +   D DG   L  A      +I +L
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

Query: 123 LIN 125
           L  
Sbjct: 272 LCK 274

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 66.7 bits (164), Expect = 5e-14
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 41  LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYG----YLPCVQLLLERGAS 96
           L  AA+ G V  L++ LD +   ++     G  AL    L            LLL+ GA 
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 97  LEAKDEDGAIPLHDACAGGFIEIVQLLINS 126
           +  + E G  PL  A     + +VQ L+  
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 66.7 bits (164), Expect = 6e-14
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDED-GAIPLHDACAGGFIEIVQLLIN 125
           + +  L        +  VQ LLE GA++  ++E+ G  PLH+A      +IV+LL+ 
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 64.8 bits (159), Expect = 3e-13
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 10/72 (13%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDED----------GAIPLHDACA 113
           ++E    G TA     +YG +  ++ L +RGA++  + +           GA  L DA  
Sbjct: 98  VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157

Query: 114 GGFIEIVQLLIN 125
            G +E++++L++
Sbjct: 158 KGHVEVLKILLD 169

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 43.6 bits (104), Expect = 7e-06
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92
           +TP  L     A +   +  ++  L+     I++   DG TAL L          +LL +
Sbjct: 220 KTPLIL-----AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

Query: 93  RGASLEAKD 101
           RGAS +  D
Sbjct: 275 RGASTDCGD 283

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 70.1 bits (173), Expect = 4e-16
 Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 26  VNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTALHLTCLYGYL 84
              D    +P HL     AAQ G   +  + L    G S D   +   T LH+    G+ 
Sbjct: 28  FTTDWLGTSPLHL-----AAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLHMAASEGHA 80

Query: 85  PCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
             V++LL+ GA + AKD      LH A      E+V+LLI
Sbjct: 81  NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 62.8 bits (154), Expect = 2e-13
 Identities = 11/60 (18%), Positives = 26/60 (43%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++       TALH    + +   V+LL++ GA +  + +        +   G  ++ ++L
Sbjct: 93  VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 60.9 bits (149), Expect = 1e-12
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
           D    L      G    V++L+  GA     D  G  PLH A   G     ++L+
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLL 54

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 71.7 bits (177), Expect = 4e-16
 Identities = 20/56 (35%), Positives = 26/56 (46%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
             G+TALHL   Y      + LLE  A    +D  G  PLH A +     + Q+LI
Sbjct: 23  RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 70.1 bits (173), Expect = 2e-15
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           +D  + DG T L L         ++ L+   A + A D+ G   LH A A   ++   +L
Sbjct: 85  LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144

Query: 124 I 124
           +
Sbjct: 145 L 145

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 69.7 bits (172), Expect = 2e-15
 Identities = 15/61 (24%), Positives = 24/61 (39%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
            D      +T L L    G     ++LL+  A+ +  D    +P   A      +IV+LL
Sbjct: 151 KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210

Query: 124 I 124
            
Sbjct: 211 D 211

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 68.2 bits (168), Expect = 7e-15
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++   + G +ALH       +    +LL+ GA+ + ++     PL  A   G  E  ++L
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177

Query: 124 IN 125
           ++
Sbjct: 178 LD 179

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 66.3 bits (163), Expect = 3e-14
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGAS-LEAKDEDGAIPLHDACAGGFIEIVQL 122
            +     G T LH           Q+L+   A+ L+A+  DG  PL  A       +++ 
Sbjct: 51  ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLED 110

Query: 123 LIN 125
           LIN
Sbjct: 111 LIN 113

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.9 bits (110), Expect = 1e-06
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 82  GYLPCVQLLLERGASLE-AKDEDGAIPLHDACAGGFIEIVQLLI 124
                +   + +GASL    D  G   LH A      +  + L+
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL 45

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 69.4 bits (171), Expect = 5e-16
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           I       D  L      G +  V+ LLE GA   A +  G  P+     G   ++ +LL
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS-AQVAELL 63

Query: 124 IN 125
           + 
Sbjct: 64  LL 65

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 69.4 bits (171), Expect = 6e-16
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 64  IDEPVEDGDT-ALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQL 122
            +       T  +H     G+L  + +L   GA L+  D  G +P+  A   G  +I + 
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY 129

Query: 123 LIN 125
           L  
Sbjct: 130 LHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 68.6 bits (169), Expect = 1e-15
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 11/102 (10%)

Query: 26  VNM-DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTALHLTCLYGY 83
           ++M    S+       LA AA  G V ++R  L+   G   +     G   + +    G 
Sbjct: 5   IHMLGGSSDAG-----LATAAARGQVETVRQLLEA--GADPNALNRFGRRPIQVMM-MGS 56

Query: 84  LPCVQLLLERGASLEAKDEDGA-IPLHDACAGGFIEIVQLLI 124
               +LLL  GA     D      P+HDA   GF++ + +L 
Sbjct: 57  AQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH 98

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 7/32 (21%), Positives = 11/32 (34%)

Query: 94  GASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
              +          L  A A G +E V+ L+ 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLE 33

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 5/32 (15%), Positives = 9/32 (28%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGA 95
           +D     G   + L    G+    + L     
Sbjct: 104 LDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.4 bits (176), Expect = 6e-16
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 11/99 (11%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRL-----ALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV 87
            TP HL     A + G + S+ +        +L   +     +G T LHL  ++GYL  V
Sbjct: 79  NTPLHL-----ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV 133

Query: 88  QLLLERGASLEAKDE-DGAIPLHDACAGGFIEIVQLLIN 125
           +LL+  GA + A++  +G   LH A      ++V LL+ 
Sbjct: 134 ELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.4 bits (176), Expect = 7e-16
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 9/117 (7%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDNLSG---SIDEPVEDGDTALHLTCLYGYLPCVQL 89
           ++  HL     A    +       +  + G    ++       T LHL  +       + 
Sbjct: 9   DSFLHL-----AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 90  LLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT 146
           LL  G   E +D  G  PLH AC  G +  V +L   +  T  +  +L+  +  G T
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT-QSCTTPHLHSILKATNYNGHT 119

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 66.8 bits (164), Expect = 4e-14
 Identities = 17/56 (30%), Positives = 20/56 (35%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           +G TALHL         V LLL+ GA +      G  P           I Q L  
Sbjct: 150 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ 205

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 63.7 bits (156), Expect = 4e-13
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 69  EDGDTALHLTCLYGY----LPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
           EDGD+ LHL  ++      +  ++ +    A L  ++     PLH A      EI + L+
Sbjct: 6   EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 65

Query: 125 N 125
            
Sbjct: 66  G 66

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.1 bits (118), Expect = 7e-08
 Identities = 7/57 (12%), Positives = 12/57 (21%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIV 120
           ++     G +   LT         Q L +          +            F E  
Sbjct: 177 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 69.0 bits (170), Expect = 7e-16
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++   E G T L+L   +G+L  V++LL+ GA + A D  G  PLH A   G +EI ++L
Sbjct: 40  VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVL 99

Query: 124 I 124
           +
Sbjct: 100 L 100

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 66.6 bits (164), Expect = 6e-15
 Identities = 16/61 (26%), Positives = 30/61 (49%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++     G T LHL    G+L   ++LL+ GA + A+D+ G      +   G  ++ ++L
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

Query: 124 I 124
            
Sbjct: 133 Q 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 65.9 bits (162), Expect = 1e-14
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
           D    L      G    V++L+  GA + AKDE G  PL+ A A G +EIV++L+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL 67

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 71.3 bits (176), Expect = 8e-16
 Identities = 20/56 (35%), Positives = 26/56 (46%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
             G+TALHL   Y      + LLE  A    +D  G  PLH A +     + Q+LI
Sbjct: 55  RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 70.6 bits (174), Expect = 1e-15
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           +D  + DG T L L         ++ L+   A + A D+ G   LH A A   ++   +L
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176

Query: 124 IN 125
           + 
Sbjct: 177 LK 178

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 70.2 bits (173), Expect = 2e-15
 Identities = 15/63 (23%), Positives = 24/63 (38%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
            D      +T L L    G     ++LL+  A+ +  D    +P   A      +IV+LL
Sbjct: 183 KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

Query: 124 INS 126
              
Sbjct: 243 DLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 67.9 bits (167), Expect = 1e-14
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++   + G +ALH       +    +LL+ GA+ + ++     PL  A   G  E  ++L
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209

Query: 124 IN 125
           ++
Sbjct: 210 LD 211

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 67.1 bits (165), Expect = 3e-14
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 9/95 (9%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTALHLTCLYGYLPCVQLLL 91
           ET  HL     AA+     + +  L+       +     G T LH           Q+L+
Sbjct: 58  ETALHL-----AARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILI 110

Query: 92  ERGAS-LEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
              A+ L+A+  DG  PL  A       +++ LIN
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 145

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 56.3 bits (137), Expect = 3e-10
 Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 14/76 (18%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPC-------------VQLLLERGASLE-AKDEDGAIPLH 109
           ++    DG T L +    G                 +   + +GASL    D  G   LH
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62

Query: 110 DACAGGFIEIVQLLIN 125
            A      +  + L+ 
Sbjct: 63  LAARYSRSDAAKRLLE 78

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 72.3 bits (178), Expect = 1e-15
 Identities = 14/62 (22%), Positives = 25/62 (40%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++    D +T L L  L      V  L++ GA     ++     LH A A     ++  +
Sbjct: 159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 218

Query: 124 IN 125
           +N
Sbjct: 219 LN 220

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 70.0 bits (172), Expect = 6e-15
 Identities = 19/62 (30%), Positives = 27/62 (43%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
            D+  EDG T + L    G +  V  L+++GAS+EA D         A A     IV + 
Sbjct: 306 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365

Query: 124 IN 125
             
Sbjct: 366 DR 367

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLL-ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
             G TALH       +P V+ L+ E+G++ + +DEDG  P+  A   G IE+V  LI 
Sbjct: 277 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 334

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.4 bits (142), Expect = 6e-11
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 11/73 (15%)

Query: 64  IDEPVEDGDTALHLTCLYGY---LPCVQLLLERGA--------SLEAKDEDGAIPLHDAC 112
           I+E   +G TAL +         +   +LL+E+GA          +++   G   LH A 
Sbjct: 228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA 287

Query: 113 AGGFIEIVQLLIN 125
               + IV+ L+ 
Sbjct: 288 QVSNMPIVKYLVG 300

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.0 bits (141), Expect = 8e-11
 Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 6/68 (8%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLE---RGASLEAKDEDGAIPLHDACAGG---FI 117
                +   +ALH          +  +L        +E  D +G   L           +
Sbjct: 192 PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV 251

Query: 118 EIVQLLIN 125
              +LL+ 
Sbjct: 252 ASAKLLVE 259

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 14/117 (11%), Positives = 24/117 (20%), Gaps = 23/117 (19%)

Query: 9   MEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV 68
           ME ++    N              +          A+  G +   R  L +         
Sbjct: 21  MENEEKNRKNHQSITSS-------QHSLL-----EASYDGYIKRQRNELQH--------- 59

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
                        G                  + +  I LH   AG    I + +  
Sbjct: 60  -YSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGS-YAITEPITR 114

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 2/62 (3%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
             EP  +    LH     G     + +     ++          LH   +    E  + L
Sbjct: 87  PTEPEPESPIKLHTEA-AGSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDL 144

Query: 124 IN 125
           I 
Sbjct: 145 IV 146

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 68.4 bits (168), Expect = 8e-15
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92
           E+P  L     AA+  DV +L   L      + +    G+TALH+  LY  L    +L+E
Sbjct: 4   ESPLLL-----AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLME 58

Query: 93  RGA-----SLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
                    + ++  +G   LH A     + +V+ L+
Sbjct: 59  AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALL 95

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 60.7 bits (148), Expect = 5e-12
 Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 71  GDTALHLTCLYGYLPCVQ-LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
            ++ L L      +  +  LL   G  +  +   G   LH A     +E   +L+
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLM 57

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 13/80 (16%)

Query: 58  DNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAI----------- 106
           + +   +   + +G TALH+  +   +  V+ LL RGAS+ A+                 
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121

Query: 107 --PLHDACAGGFIEIVQLLI 124
             PL  A   G  EIV+LLI
Sbjct: 122 EHPLSFAACVGSEEIVRLLI 141

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 57.2 bits (139), Expect = 9e-11
 Identities = 15/68 (22%), Positives = 22/68 (32%)

Query: 58  DNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFI 117
                     +  G+  L      G    V+LL+E GA + A+D  G   LH        
Sbjct: 108 SVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNK 167

Query: 118 EIVQLLIN 125
                + N
Sbjct: 168 TFACQMYN 175

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 55.7 bits (135), Expect = 3e-10
 Identities = 27/120 (22%), Positives = 40/120 (33%), Gaps = 18/120 (15%)

Query: 17  DNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTAL 75
             ++F     N+    E P        AA +G    +RL +++  G  I      G+T L
Sbjct: 106 TGSVFHYRPHNLIYYGEHPLSF-----AACVGSEEIVRLLIEH--GADIRAQDSLGNTVL 158

Query: 76  HLTCLYGY----LPCVQLLLERGASLEAK------DEDGAIPLHDACAGGFIEIVQLLIN 125
           H+  L            LLL        K      +  G  P   A   G I + Q L+ 
Sbjct: 159 HILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 67.2 bits (164), Expect = 2e-14
 Identities = 23/65 (35%), Positives = 33/65 (50%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
                +D  TALH  C  G+   V+ LL+ G  +  KD+ G  PLH A + G  EIV+ L
Sbjct: 33  ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKAL 92

Query: 124 INSAS 128
           +   +
Sbjct: 93  LVKGA 97

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 63.7 bits (155), Expect = 4e-13
 Identities = 13/56 (23%), Positives = 21/56 (37%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
                 +L          + +L   +     D+D    LH AC+ G  EIV+ L+ 
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 18/68 (26%), Positives = 35/68 (51%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           +++  + G + LH+    G    V+ LL +GA + A +++G  PLH A +    EI  +L
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 124 INSASGTE 131
           +   +  +
Sbjct: 126 LEGGANPD 133

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.0 bits (135), Expect = 3e-10
 Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 3/96 (3%)

Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
           + +++       +  AA  G++  + + L     S +    +G+T LHL C    +   +
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGNTPLHLACDEERVEEAK 189

Query: 89  LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
            L+ +GAS+  ++++   PL    A G + ++   +
Sbjct: 190 FLVTQGASIYIENKEEKTPLQ--VAKGGLGLILKRL 223

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.0 bits (135), Expect = 3e-10
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92
            +P H+     AA  G    ++  L      ++   ++G T LH            +LLE
Sbjct: 74  WSPLHI-----AASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127

Query: 93  RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
            GA+ +AKD   A  +H A A G +++V +L+   +
Sbjct: 128 GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKA 163

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 54.9 bits (132), Expect = 6e-10
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 6/111 (5%)

Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
           +    TP H      AA         + L+    + D       TA+H     G L  V 
Sbjct: 103 NQNGCTPLHY-----AASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVH 156

Query: 89  LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
           +LL   AS   +D +G  PLH AC    +E  + L+   +      +  +T
Sbjct: 157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKT 207

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 65.8 bits (160), Expect = 1e-13
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 3/100 (3%)

Query: 31  ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLL 90
             E   HL      A    +  +   + N  G +D    DG+TALH   LY    C++LL
Sbjct: 189 PEELVLHL--AVKVANQASLPLVDFIIQN-GGHLDAKAADGNTALHYAALYNQPDCLKLL 245

Query: 91  LERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
           L+  A +   +E G   L  A      E  +LL  + +GT
Sbjct: 246 LKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT 285

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 63.1 bits (153), Expect = 2e-12
 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 18/91 (19%)

Query: 64  IDEPV-EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGG------- 115
           ++ PV E G+T LH       L  V+ L++ G++    D  G   L  A           
Sbjct: 123 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGT 182

Query: 116 FIEIVQLLINSASGTECVKRMLETVDAEGDT 146
           F  ++  L             L   D+   T
Sbjct: 183 FEALLDYLYPC----------LILEDSMNRT 203

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 58.5 bits (141), Expect = 6e-11
 Identities = 12/92 (13%), Positives = 32/92 (34%)

Query: 18  NALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHL 77
             + ++    +   +       +     +   +         ++  ++    +GDT L++
Sbjct: 230 GWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNI 289

Query: 78  TCLYGYLPCVQLLLERGASLEAKDEDGAIPLH 109
               G +  V  LL+ GA     ++ G  P+ 
Sbjct: 290 AARLGNISIVDALLDYGADPFIANKSGLRPVD 321

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 11/93 (11%)

Query: 44  AAQLGDVHSLRLALDNL-------SGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGAS 96
           +   G   + +  LD L            +   +   +            +   L+    
Sbjct: 212 SGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI 271

Query: 97  LE----AKDEDGAIPLHDACAGGFIEIVQLLIN 125
           +     A+D +G   L+ A   G I IV  L++
Sbjct: 272 IANMLNAQDSNGDTCLNIAARLGNISIVDALLD 304

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 12/91 (13%)

Query: 28  MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTALHLTCLYG---Y 83
           +D    TP H         + ++  ++  + +  G +       G++ L           
Sbjct: 127 VDEHGNTPLHW-----LTSIANLELVKHLVKH--GSNRLYGDNMGESCLVKAVKSVNNYD 179

Query: 84  LPCVQLLLER-GASLEAKDEDGAIPLHDACA 113
               + LL+     L  +D      LH    
Sbjct: 180 SGTFEALLDYLYPCLILEDSMNRTILHHIII 210

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 62.1 bits (151), Expect = 2e-12
 Identities = 14/63 (22%), Positives = 22/63 (34%)

Query: 63  SIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQL 122
            +       ++AL +    G L     L       E  +  G  PL  A   G IEI + 
Sbjct: 180 VMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRH 239

Query: 123 LIN 125
           ++ 
Sbjct: 240 ILQ 242

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 13/68 (19%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDE-------------DGAIPLHDACAGGF 116
            G +ALH+      L CV+LL+E GA +  +                G +PL  A     
Sbjct: 89  QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148

Query: 117 IEIVQLLI 124
            ++V  L+
Sbjct: 149 WDVVTYLL 156

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 21/106 (19%)

Query: 41  LAAAAQLGDVHSLRLALDNLSGSIDEPVED-------GDTALH---LTCLYGYLPCVQLL 90
           L +    G    L   L+ L  +     +        G T L    L    G   C+  L
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65

Query: 91  LERG-----------ASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           L+             A    +   G   LH A     ++ V+LL+ 
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE 111

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 12/97 (12%)

Query: 39  RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDT----ALHLTCLYGYLPCVQLLLERG 94
           R ++AAA LG         +   G  D+            L              L+ +G
Sbjct: 8   RTVSAAAMLGTYEDFLELFEK--GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65

Query: 95  ASLEAKDEDGAIPLHDACAGG------FIEIVQLLIN 125
           A ++++ ++G         GG        E+ ++ + 
Sbjct: 66  ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE 102

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 9/112 (8%)

Query: 20  LFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTALHLT 78
           LFE+   + +   ++      L               ++   G  I    ++G T     
Sbjct: 25  LFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK--GADIKSRTKEGTTLFFPL 82

Query: 79  CLYGY------LPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
              G           ++ LE+GA + A  +   I +       F++  +++ 
Sbjct: 83  FQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIP 134

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 55.1 bits (133), Expect = 4e-10
 Identities = 6/64 (9%), Positives = 19/64 (29%), Gaps = 7/64 (10%)

Query: 69  EDGDTALHLTCLYGYLPCVQ-------LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQ 121
           +     +       ++   +       +  + G  L  KD+ G   L           ++
Sbjct: 112 KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALK 171

Query: 122 LLIN 125
           ++ +
Sbjct: 172 MMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 5/35 (14%), Positives = 12/35 (34%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDED 103
           + G TAL           ++++ +       K+  
Sbjct: 152 KWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 10/59 (16%), Positives = 15/59 (25%), Gaps = 3/59 (5%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASL---EAKDEDGAIPLHDACAGGFIEIVQLLIN 125
                +    + G       L E+G        K       L +       +I   LIN
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 62.1 bits (151), Expect = 3e-12
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 22/107 (20%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE 92
           +T   L  L  A +   +     A      S  +    G TALH+      +  V LL+E
Sbjct: 71  DTIALL--LDVARKTDSLKQFVNA------SYTDSYYKGQTALHIAIERRNMTLVTLLVE 122

Query: 93  RGASLEAKDED--------------GAIPLHDACAGGFIEIVQLLIN 125
            GA ++A                  G +PL  A     + IV+ L+ 
Sbjct: 123 NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 23/128 (17%)

Query: 16  EDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGS--IDEPVEDGDT 73
             +   +  G       E P     L+ AA    +  ++  L N      I      G+T
Sbjct: 132 NGDFFKKTKGRPGFYFGELP-----LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 186

Query: 74  ALHLTCLYG---------YLPCVQLLLERGASL-------EAKDEDGAIPLHDACAGGFI 117
            LH                      +L  GA L       E  +  G  PL  A + G I
Sbjct: 187 VLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI 246

Query: 118 EIVQLLIN 125
            ++  ++ 
Sbjct: 247 GVLAYILQ 254

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 8/93 (8%)

Query: 63  SIDEPVEDGDTALHLTCLYGYLPCVQLLLERG---ASLEAKDEDGAIPLHDACAGGFIEI 119
                   G+  L L      L  V+ LL+     A + A+D  G   LH         +
Sbjct: 140 KGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTV 199

Query: 120 VQLLINSASGTECVKRMLETVDAEGDTDCDDQN 152
                 ++         +  + A+       + 
Sbjct: 200 DNTKFVTSMYN-----EILILGAKLHPTLKLEE 227

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 13/75 (17%), Positives = 19/75 (25%), Gaps = 17/75 (22%)

Query: 41  LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
           L   A+L     L    +            G T L L    G +  +  +L+R       
Sbjct: 213 LILGAKLHPTLKLEEITNR----------KGLTPLALAASSGKIGVLAYILQREI----- 257

Query: 101 DEDGAIPLHDACAGG 115
                   H A    
Sbjct: 258 --HEPECRHAAAHHH 270

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 22/115 (19%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV--------EDGDTALHLTCLYGYL 84
           +T      L  +A   D   + L +   +G++ E +          G TALH+       
Sbjct: 47  KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCK 106

Query: 85  PCVQLLLERGASLEAKD--------------EDGAIPLHDACAGGFIEIVQLLIN 125
             V+LL+E+GA + A+                 G +PL  A       IV  L  
Sbjct: 107 HYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 20/110 (18%), Positives = 32/110 (29%), Gaps = 12/110 (10%)

Query: 49  DVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG---ASLEAKDEDGA 105
           DVH+                  G+  L L         V  L E G   A L  +D  G 
Sbjct: 118 DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGN 177

Query: 106 IPLHDACAGG---------FIEIVQLLINSASGTECVKRMLETVDAEGDT 146
             LH   A             ++  LL+   +       +   ++ +G +
Sbjct: 178 TVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS 227

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 26/111 (23%), Positives = 33/111 (29%), Gaps = 23/111 (20%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDNLSGS--IDEPVEDGDTALHLTCLYG-------- 82
           E P  L     AA     H +    +N      +      G+T LH              
Sbjct: 141 ELPLSL-----AACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTK 195

Query: 83  -YLPCVQLLLERGASLEAK-------DEDGAIPLHDACAGGFIEIVQLLIN 125
                  LLL + A L          + DG  PL  A   G I I Q +I 
Sbjct: 196 FVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 15/81 (18%), Positives = 22/81 (27%), Gaps = 14/81 (17%)

Query: 59  NLSGSIDEPVEDGDTALH---LTCLYGYLPCVQLLLERG-----------ASLEAKDEDG 104
            L+         G T L    L    G    + +LL+             +        G
Sbjct: 34  RLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRG 93

Query: 105 AIPLHDACAGGFIEIVQLLIN 125
              LH A        V+LL+ 
Sbjct: 94  QTALHIAIERRCKHYVELLVE 114

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 7/35 (20%), Positives = 13/35 (37%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDG 104
           DG + L +    G +   Q ++ R  +  A     
Sbjct: 224 DGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHH 258

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 59.4 bits (143), Expect = 3e-11
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 1/99 (1%)

Query: 25  GVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYL 84
           G +++  +    +   L  A     + +    L N   ++++    G   LH   + G+ 
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPLHHATILGHT 281

Query: 85  PCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
               L L+RGA L A+D +G  PL  A      +IV LL
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 52.5 bits (125), Expect = 7e-09
 Identities = 25/138 (18%), Positives = 43/138 (31%), Gaps = 8/138 (5%)

Query: 10  EEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDN-LSGSIDEPV 68
           +        +L  +     +      P      A+     + ++  AL +    +     
Sbjct: 173 KPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGG 232

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
           +D  T L        L   + LL+ GA++   D  G  PLH A   G   +  L +    
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR-- 290

Query: 129 GTECVKRMLETVDAEGDT 146
                   L   D+EG  
Sbjct: 291 -----GADLGARDSEGRD 303

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.6 bits (118), Expect = 8e-08
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 7/92 (7%)

Query: 38  LRDLAAAAQLGDVHSLRLALDNLS----GSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
           LR+L        +  +R  L                D +  L L    G      LLL  
Sbjct: 282 LRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 341

Query: 94  GASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
            + L     +     +    GG +++  + + 
Sbjct: 342 PSVLALTKANN---YYINETGGRLDLRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.5 bits (110), Expect = 9e-07
 Identities = 14/119 (11%), Positives = 32/119 (26%), Gaps = 5/119 (4%)

Query: 12  DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDN--LSGSIDEPVE 69
                 N L        +      P  +++    QL  ++      +   L     +   
Sbjct: 31  QHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGI 90

Query: 70  DGDTALHLTCLYGY---LPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
             +    +  + G    L  + LLL     ++    +       A   G + ++  L  
Sbjct: 91  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE 149

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 9/68 (13%), Positives = 15/68 (22%), Gaps = 8/68 (11%)

Query: 66  EPVEDGDTALHLTCLYGYLPCVQLL--------LERGASLEAKDEDGAIPLHDACAGGFI 117
                G   L           +  +        ++  A       D    L  A   G  
Sbjct: 273 SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ 332

Query: 118 EIVQLLIN 125
               LL++
Sbjct: 333 GACALLLS 340

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 8/79 (10%), Positives = 22/79 (27%), Gaps = 8/79 (10%)

Query: 70  DGDTALHLTCL-YGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
           +   A     +  G+   +  LL+    L   +             G   +   +    +
Sbjct: 197 ENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE-------IHEFEYGEKYVNPFIARHVN 249

Query: 129 GTECVKRMLETVDAEGDTD 147
             + +    +  + +G  D
Sbjct: 250 RLKEMHDAFKLSNPDGVFD 268

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	169
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.95
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.95
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
2pnn_A	273	Transient receptor potential cation channel subfa	99.95
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.95
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.95
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
2rfa_A	232	Transient receptor potential cation channel subfa	99.94
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.94
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.94
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.94
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.94
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.94
2rfa_A	232	Transient receptor potential cation channel subfa	99.94
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.94
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.94
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.94
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.94
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.94
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.94
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.94
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.94
2etb_A	256	Transient receptor potential cation channel subfam	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.93
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.93
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.93
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.93
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.93
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.93
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.93
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.92
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.92
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.92
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.92
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
2pnn_A	273	Transient receptor potential cation channel subfa	99.92
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.92
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.91
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.91
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.91
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.91
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.9
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.85
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.85
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.85
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.83
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.83
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.81
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=7e-33  Score=184.34  Aligned_cols=142  Identities=29%  Similarity=0.449  Sum_probs=131.3

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL   91 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll   91 (169)
                      .+..++++.|++.|++++..  +..|.||||+|+..++.+++++|++. |++++.++..|+||||+|+..|+.+++++|+
T Consensus        14 ~G~~~~v~~Ll~~Gadvn~~--d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll   90 (169)
T 4gpm_A           14 NGNKDRVKDLIENGADVNAS--DSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLI   90 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhhccCCCCHHHHHHHcCCHHHHHHHH
Confidence            45667888899999998754  56888999999999999999999998 9999999999999999999999999999999


Q ss_pred             HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhccc
Q 030904           92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQE  163 (169)
Q Consensus        92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~~  163 (169)
                      ++|++++.+|..|+||||+|++.|+.+++++|+++|+++       +.+|.+|+|||++|+     +++++|++.|.
T Consensus        91 ~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-------~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A           91 SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-------NTSDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             HCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------cccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            999999999999999999999999999999999999998       799999999999995     99999999653

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.4e-28  Score=163.29  Aligned_cols=140  Identities=27%  Similarity=0.431  Sum_probs=128.5

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      ...++++++++.|.+++..  +..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus        25 g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  101 (169)
T 2y1l_E           25 GRDDEVRILMANGADVNAE--DASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRLAALFGHLEIVEVLLK  101 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            4566788899999888754  55788999999999999999999998 99999999999999999999999999999999


Q ss_pred             cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904           93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus        93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      .|++++.+|..|.||||+|+..|+.+++++|+++|+++       +.+|..|.||+++|+     +++++|++.|
T Consensus       102 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          102 NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-------NAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999998       789999999999995     8899998754

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=2.1e-28  Score=161.75  Aligned_cols=140  Identities=23%  Similarity=0.293  Sum_probs=123.4

Q ss_pred             HHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 030904           15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG   94 (169)
Q Consensus        15 ~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g   94 (169)
                      ...++.+++.+ ..+....+..+.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.|
T Consensus        21 ~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   98 (165)
T 3twr_A           21 VETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG   98 (165)
T ss_dssp             HHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhc-CCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCC
Confidence            34555555532 233445566788999999999999999999998 9999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh----hHHHHhhhccc
Q 030904           95 ASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN----DLVSLFIMQQE  163 (169)
Q Consensus        95 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~----~~~~~li~~~~  163 (169)
                      ++++.+|..|.||||+|+..|+.+++++|+++|+++       +.+|..|.||+++|.    +++++|++.|.
T Consensus        99 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~a~~~~~~i~~~L~~~gA  164 (165)
T 3twr_A           99 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-------TKKNRDGNTPLDLVKDGDTDIQDLLRGDAA  164 (165)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCTGGGSCTTCHHHHHHHHTC--
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------cccCCCCCChhHhHhcCChHHHHHHhhccc
Confidence            999999999999999999999999999999999998       799999999999994    99999998764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.3e-28  Score=162.21  Aligned_cols=140  Identities=24%  Similarity=0.352  Sum_probs=128.3

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      ...++++.+++.|.+++..  +..+.||||+|+. |+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus        16 g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   91 (162)
T 1ihb_A           16 GDLEQLTSLLQNNVNVNAQ--NGFGRTALQVMKL-GNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFLDTLQTLLE   91 (162)
T ss_dssp             TCHHHHHHHTTSCCCTTCC--CTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHhCCCCcccc--CccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            4566788888888887644  5678899999999 999999999998 99999999999999999999999999999999


Q ss_pred             cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904           93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus        93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      .|++++.++..|.||||+|+..|+.+++++|+++|.+.      ++.++..|.||||+|+     +++++|++.|
T Consensus        92 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A           92 FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN------VGHRNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC------CCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            99999999999999999999999999999999999985      4789999999999995     9999999876

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=5.1e-29  Score=159.99  Aligned_cols=125  Identities=22%  Similarity=0.303  Sum_probs=117.0

Q ss_pred             cccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCC-CCCh
Q 030904           29 DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDED-GAIP  107 (169)
Q Consensus        29 ~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~-~~t~  107 (169)
                      ++...+..+.||||+|+..|+.+++++|++. +++++.++..|+||||+|+. ++.+++++|++.|++++.++.. |.||
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP   81 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence            3445567888999999999999999999998 99999999999999999999 9999999999999999999999 9999


Q ss_pred             HHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          108 LHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       108 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      ||+|+..|+.+++++|+++|+++       +.+|..|.||||+|+     +++++|++.|
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~-------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGARL-------DVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCCC-------CCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-------CccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            99999999999999999999998       799999999999995     8999999865

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=3.1e-28  Score=159.15  Aligned_cols=135  Identities=25%  Similarity=0.270  Sum_probs=123.3

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      +...+++.+++.|.+++   .+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus        13 g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   88 (153)
T 1awc_B           13 GQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHANIVEVLLK   88 (153)
T ss_dssp             TCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHH
Confidence            35567788888888765   356788999999999999999999988 99999999999999999999999999999999


Q ss_pred             cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHh
Q 030904           93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLF  158 (169)
Q Consensus        93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~l  158 (169)
                      .|++++.+|..|.||||+|+..|+.+++++|+++|+++       +.+|..|.||+++|+     +++++|
T Consensus        89 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           89 HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-------HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999999999999999999998       789999999999995     666654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=1.3e-28  Score=175.07  Aligned_cols=128  Identities=23%  Similarity=0.328  Sum_probs=74.6

Q ss_pred             HHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHh--------------------------------CCCC
Q 030904           16 EDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDN--------------------------------LSGS   63 (169)
Q Consensus        16 ~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~--------------------------------~~~~   63 (169)
                      .+++++++.|++++..  +..|.||||+|+..|+.+++++|++.                                .|++
T Consensus        67 ~~v~~Ll~~Gadvn~~--d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  144 (269)
T 4b93_B           67 KRLAKVPASGLGVNVT--SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK  144 (269)
T ss_dssp             --------CCCCTTCC--CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHCCCCCCCc--CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCC
Confidence            4555666666666543  33556666666666666666665554                                1445


Q ss_pred             CcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCC
Q 030904           64 IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAE  143 (169)
Q Consensus        64 ~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~  143 (169)
                      ++.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++       +.+|.+
T Consensus       145 ~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~-------~~~d~~  217 (269)
T 4b93_B          145 PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASV-------QVLNKR  217 (269)
T ss_dssp             SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCS-------CCCCTT
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC-------CCcCCC
Confidence            5555566666666666666666666666666666666666666666666666666666666666665       566666


Q ss_pred             CCCcccchh
Q 030904          144 GDTDCDDQN  152 (169)
Q Consensus       144 g~tpl~~A~  152 (169)
                      |+||||+|+
T Consensus       218 G~TpL~~A~  226 (269)
T 4b93_B          218 QRTAVDCAE  226 (269)
T ss_dssp             SCCSGGGSC
T ss_pred             CCCHHHHHH
Confidence            666666663

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=9.1e-28  Score=158.96  Aligned_cols=141  Identities=21%  Similarity=0.249  Sum_probs=128.3

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL   91 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll   91 (169)
                      .+...+++.+++.+.+++.  .+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|+
T Consensus        13 ~g~~~~v~~ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   89 (167)
T 3v31_A           13 QGEMLYLATRIEQENVINH--TDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSKGYTDIVKMLL   89 (167)
T ss_dssp             TTCHHHHHHHHHHSSCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCcCC--CCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            3456677778888877654  466888999999999999999999998 9999999999999999999999999999999


Q ss_pred             HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904           92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus        92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      +.|++++.+|..|.||||+|+..|+.+++++|+++|+++       +.++..|.||+++|+     +++++|++.+
T Consensus        90 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (167)
T 3v31_A           90 DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-------TIETDSGYNSMDLAVALGYRSVQQVIESHL  158 (167)
T ss_dssp             HHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998       789999999999995     8889988754

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=8.3e-28  Score=159.81  Aligned_cols=116  Identities=32%  Similarity=0.534  Sum_probs=111.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHH
Q 030904           39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE  118 (169)
Q Consensus        39 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~  118 (169)
                      +.|+.||..|+.++++.|++. |+++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN-GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence            479999999999999999998 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          119 IVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       119 ~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      ++++|+++|+++       +.+|.+|+||||+|+     +++++|++.+
T Consensus        85 ~v~~Ll~~gadv-------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g  126 (169)
T 4gpm_A           85 VVKLLISKGADV-------NAKDSDGRTPLHHAAENGHKEVVKLLISKG  126 (169)
T ss_dssp             HHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHCcCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999998       899999999999995     9999999954

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=3e-27  Score=158.23  Aligned_cols=139  Identities=21%  Similarity=0.240  Sum_probs=124.3

Q ss_pred             hHHHHHHHHhc-CCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           14 SEEDNALFEED-GVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        14 ~~~~~~~l~~~-g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      ...+++.+++. +.+++  ..+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus        17 ~~~~v~~ll~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   93 (179)
T 3f6q_A           17 NAVAVRLWLDNTENDLN--QGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHGHRDIVQKLLQ   93 (179)
T ss_dssp             CHHHHHHHHHCTTSCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHhcCccccc--ccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            34455556555 55554  4566888999999999999999999998 99999999999999999999999999999999


Q ss_pred             cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904           93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus        93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      .|++++.+|..|.||||+|+..|+.+++++|+++|+++       +.+|..|.||+++|+     +++++|++.+
T Consensus        94 ~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g  161 (179)
T 3f6q_A           94 YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-------SICNKYGEMPVDKAKAPLRELLRERAEKMG  161 (179)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-------SBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred             cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-------chhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999998       799999999999994     8888888854

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.2e-27  Score=159.07  Aligned_cols=141  Identities=21%  Similarity=0.275  Sum_probs=125.7

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      .....++.+++.+... ....+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus        13 g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   90 (172)
T 3v30_A           13 GELDQLKEHLRKGDNL-VNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKERESALSLASTGGYTDIVGLLLE   90 (172)
T ss_dssp             TCHHHHHHHHTTCSGG-GGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCccc-ccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhcccCCCHHHHHHHCCCHHHHHHHHH
Confidence            3445566666666552 234466888999999999999999999998 99999999999999999999999999999999


Q ss_pred             cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904           93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus        93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      +|++++.++..|.||||+|+..|+.+++++|+++|+++       +.++..|.||||+|+     +++++|++.+
T Consensus        91 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           91 RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-------TTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------cccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998       789999999999995     8899998854

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=6.7e-28  Score=171.30  Aligned_cols=114  Identities=19%  Similarity=0.190  Sum_probs=95.3

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER   93 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~   93 (169)
                      ...++++|++.|++++..  +..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|+++
T Consensus       131 ~~~~~~~Ll~~g~~~n~~--d~~g~TpL~~A~~~g~~~~v~~Ll~~-gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  207 (269)
T 4b93_B          131 HFQVVKCLLDSNAKPNKK--DLSGNTPLIYACSGGHHELVALLLQH-GASINASNNKGNTALHEAVIEKHVFVVELLLLH  207 (269)
T ss_dssp             CHHHHHHHHHTTCCSCCC--CTTCCCHHHHHHHTTCGGGHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred             hHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHC
Confidence            456788888888887654  56788999999999999999999998 999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCCChHHHHHhcCh-HHHHHHHHhcCCCc
Q 030904           94 GASLEAKDEDGAIPLHDACAGGF-IEIVQLLINSASGT  130 (169)
Q Consensus        94 g~~~~~~~~~~~t~l~~a~~~~~-~~~~~~ll~~~~~~  130 (169)
                      |++++.+|..|+||||+|+++++ .++++.+.+.+...
T Consensus       208 Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~  245 (269)
T 4b93_B          208 GASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASL  245 (269)
T ss_dssp             TCCSCCCCTTSCCSGGGSCTTCHHHHHTTC--------
T ss_pred             CCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhh
Confidence            99999999999999999998886 35555555554443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=4.7e-28  Score=163.78  Aligned_cols=138  Identities=20%  Similarity=0.248  Sum_probs=122.6

Q ss_pred             HHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 030904           15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG   94 (169)
Q Consensus        15 ~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g   94 (169)
                      ..+++.+++.|.+++.  .+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.|
T Consensus        48 ~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  124 (192)
T 2rfm_A           48 ENAIDKLVENFDKLED--KDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG  124 (192)
T ss_dssp             GGGHHHHHHHHCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcccccc--ccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence            4467777887877664  355688999999999999999999998 8999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904           95 ASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus        95 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      ++++.++..|.||||+|+..|+.+++++|+++|+++       +.+|..|.||+++|+     +++++|++.+
T Consensus       125 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          125 ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-------SARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-------TCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------CCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            999999999999999999999999999999999997       788999999999995     8899988754

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=9.1e-28  Score=154.12  Aligned_cols=122  Identities=29%  Similarity=0.362  Sum_probs=113.7

Q ss_pred             CCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHH
Q 030904           33 ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC  112 (169)
Q Consensus        33 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~  112 (169)
                      ....+.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.|++++..|..|.||||+|+
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            355688999999999999999999998 9999999999999999999999999999999999999999999999999999


Q ss_pred             hcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          113 AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       113 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      ..|+.+++++|+++|+++       +.+|..|.||||+|+     +++++|++.|
T Consensus        89 ~~~~~~~v~~Ll~~g~~~-------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGADV-------NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHcCCCC-------cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999997       789999999999995     8999998754

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.2e-27  Score=164.98  Aligned_cols=136  Identities=21%  Similarity=0.215  Sum_probs=117.7

Q ss_pred             HHHHhcCCCCccc-CCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Q 030904           19 ALFEEDGVNMDLE-SETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASL   97 (169)
Q Consensus        19 ~~l~~~g~~~~~~-~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~   97 (169)
                      +.+++.|.+++.. .....+.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|++.|+++
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            4567777877653 3456789999999999999999999998 9999999999999999999999999999999999999


Q ss_pred             CccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhccc-CCCCCcccch--h-----hHHHHhhhcc
Q 030904           98 EAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVD-AEGDTDCDDQ--N-----DLVSLFIMQQ  162 (169)
Q Consensus        98 ~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~-~~g~tpl~~A--~-----~~~~~li~~~  162 (169)
                      +.+|..|.||||+|+..|+.+++++|++.|+++       +.++ ..|.||||+|  +     +++++|++.|
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-------~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g  146 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAI-------FATTLSDGATAFEKCDPYREGYADCATYLADVE  146 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-------TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC
Confidence            999999999999999999999999999999998       6665 6999999998  4     9999999853

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=2.2e-27  Score=155.38  Aligned_cols=137  Identities=21%  Similarity=0.258  Sum_probs=121.1

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER   93 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~   93 (169)
                      ....++.+++. ...+....+..|.||||+ +..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|++.
T Consensus        14 ~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   90 (156)
T 1bd8_A           14 DVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH   90 (156)
T ss_dssp             CHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            34455666665 433444556688999999 999999999999998 999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904           94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus        94 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      |++++.+|..|.||||+|+..|+.+++++|++. +++       +.+|..|.||||+|+     +++++|+++
T Consensus        91 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-------~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           91 GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-------HRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-------TCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-------CCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999999999999999999999998 776       789999999999995     889988864

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.95  E-value=9.4e-28  Score=154.14  Aligned_cols=112  Identities=29%  Similarity=0.369  Sum_probs=107.4

Q ss_pred             CCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHH
Q 030904           33 ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC  112 (169)
Q Consensus        33 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~  112 (169)
                      .+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            466788999999999999999999998 9999999999999999999999999999999999999999999999999999


Q ss_pred             hcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh
Q 030904          113 AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN  152 (169)
Q Consensus       113 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~  152 (169)
                      ..|+.+++++|+++|+++       +.+|..|.||+++|.
T Consensus        85 ~~~~~~~v~~Ll~~ga~~-------~~~~~~g~tpl~~A~  117 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGASR-------NAVNIFGLRPVDYTD  117 (137)
T ss_dssp             HTTCHHHHHHHHHTTCCT-------TCCCTTSCCGGGGCC
T ss_pred             HcCCHHHHHHHHHcCCCC-------CCCCCCCCCHHHHHh
Confidence            999999999999999998       799999999999995

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.95  E-value=3.6e-27  Score=163.03  Aligned_cols=140  Identities=24%  Similarity=0.336  Sum_probs=112.6

Q ss_pred             ChHHHHHHHHhcCCCCcccC-CCcchhHHHHHHHHcCCHHHHHHHHHhCC--CCCcccCCCCCcHHHHHHhcCCHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLES-ETPPHLRDLAAAAQLGDVHSLRLALDNLS--GSIDEPVEDGDTALHLTCLYGYLPCVQL   89 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~-~~~~~~t~l~~a~~~g~~~~~~~ll~~~~--~~~~~~~~~g~~~L~~a~~~~~~~~~~~   89 (169)
                      ...++++++++.|.+++... .+..|.||||+|+..|+.+++++|++. +  ++++.++..|.||||+|+..++.+++++
T Consensus        47 ~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  125 (228)
T 2dzn_A           47 QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQF  125 (228)
T ss_dssp             TCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSS-SSCCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCcccccCCcCCCCHHHHHHHcCCHhHHHH
Confidence            45567788888886666555 566778888888888888888888877 5  7777778888888888888888888888


Q ss_pred             HHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcC-CCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904           90 LLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSA-SGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM  160 (169)
Q Consensus        90 ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~  160 (169)
                      |++.|++++.++..|.||||+|+..|+.+++++|++.| .++       +.+|..|+||||+|+     +++++|++
T Consensus       126 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~  195 (228)
T 2dzn_A          126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV-------NWQDKQGWTPLFHALAEGHGDAAVLLVE  195 (228)
T ss_dssp             HHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCS-------CCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccc-------cCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            88888888888888888888888888888888888888 665       677888888888884     88888883

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.95  E-value=4.8e-27  Score=159.62  Aligned_cols=136  Identities=21%  Similarity=0.282  Sum_probs=66.5

Q ss_pred             HHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcC-
Q 030904           16 EDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG-   94 (169)
Q Consensus        16 ~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g-   94 (169)
                      +++++|++.|++++..  +..+.||||+|+..|+.+++++|++..+.+++.++..|.||||+|+..++.+++++|++.| 
T Consensus        53 ~~v~~Ll~~g~~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  130 (201)
T 3hra_A           53 EIAKALIDRGADINLQ--NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR  130 (201)
T ss_dssp             HHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            3444444444444332  2234445555555555555555554334444444445555555555555555555555554 


Q ss_pred             CCCCccCCCCCChHHHHHhcCh-----HHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904           95 ASLEAKDEDGAIPLHDACAGGF-----IEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM  160 (169)
Q Consensus        95 ~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~  160 (169)
                      ++++.++..|.||||+|+..++     .+++++|+++|+++       +.+|..|.||||+|+     +++++|++
T Consensus       131 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  199 (201)
T 3hra_A          131 EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ-------SIKDNSGRTAMDYANQKGYTEISKILAQ  199 (201)
T ss_dssp             CCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             CCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCC-------CccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence            4455555555555555554443     45555555555544       444555555555552     44555444

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=4.3e-28  Score=170.99  Aligned_cols=152  Identities=14%  Similarity=0.104  Sum_probs=130.5

Q ss_pred             CChHHHHHHHHhcCCC---------CcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccC--------------
Q 030904           12 DDSEEDNALFEEDGVN---------MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV--------------   68 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~---------~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~--------------   68 (169)
                      ....+++++|++.|.+         .+....+..|.||||+|+..|+.+++++|++. |++++.++              
T Consensus        59 ~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~  137 (260)
T 3jxi_A           59 AGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQARGRFFQPKDEGGYF  137 (260)
T ss_dssp             TTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCEECCCSSSCCCCSC
T ss_pred             cCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcCccccccccCcccccccc
Confidence            3456678888887754         33445566899999999999999999999998 99999988              


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHH---cCCCCCccCCCCCChHHHHHhcCh---------HHHHHHHHhcCCCchhhhhh
Q 030904           69 EDGDTALHLTCLYGYLPCVQLLLE---RGASLEAKDEDGAIPLHDACAGGF---------IEIVQLLINSASGTECVKRM  136 (169)
Q Consensus        69 ~~g~~~L~~a~~~~~~~~~~~ll~---~g~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~ll~~~~~~~~~~~~  136 (169)
                      ..|.||||+|+..++.+++++|++   .|++++.+|..|+||||+|+..++         .+++++|+++|++++....+
T Consensus       138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~  217 (260)
T 3jxi_A          138 YFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNL  217 (260)
T ss_dssp             CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCG
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccch
Confidence            689999999999999999999999   899999999999999999998777         68999999999886322233


Q ss_pred             hhcccCCCCCcccchh-----hHHHHhhhcccc
Q 030904          137 LETVDAEGDTDCDDQN-----DLVSLFIMQQEV  164 (169)
Q Consensus       137 ~~~~~~~g~tpl~~A~-----~~~~~li~~~~~  164 (169)
                      ++.+|..|.||||+|+     +++++|++++..
T Consensus       218 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          218 EALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA  250 (260)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            3679999999999995     999999997654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.95  E-value=6.1e-28  Score=171.46  Aligned_cols=153  Identities=14%  Similarity=0.163  Sum_probs=130.0

Q ss_pred             ChHHHHHHHHhcCCCC---------cccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCC--------------
Q 030904           13 DSEEDNALFEEDGVNM---------DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVE--------------   69 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~---------~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~--------------   69 (169)
                      ...+++++|++.|++.         .....+..|.||||+|+..|+.+++++|++. |++++.++.              
T Consensus        68 g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~  146 (273)
T 2pnn_A           68 GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDFFKKTKGRPGFY  146 (273)
T ss_dssp             TBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBCSGGGSSCSSSCCCC
T ss_pred             CChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCcccccccccccccccccc
Confidence            5567888888887542         2233456899999999999999999999998 999999886              


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHH---cCCCCCccCCCCCChHHHHHhcCh---------HHHHHHHHhcCCCchhhhhhh
Q 030904           70 DGDTALHLTCLYGYLPCVQLLLE---RGASLEAKDEDGAIPLHDACAGGF---------IEIVQLLINSASGTECVKRML  137 (169)
Q Consensus        70 ~g~~~L~~a~~~~~~~~~~~ll~---~g~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~ll~~~~~~~~~~~~~  137 (169)
                      .|.||||+|+..++.+++++|++   .|++++.+|..|+||||+|+..|+         .+++++|+++|++++....++
T Consensus       147 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~  226 (273)
T 2pnn_A          147 FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLE  226 (273)
T ss_dssp             SCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccc
Confidence            79999999999999999999999   999999999999999999999887         799999999998873222223


Q ss_pred             hcccCCCCCcccchh-----hHHHHhhhcccccc
Q 030904          138 ETVDAEGDTDCDDQN-----DLVSLFIMQQEVNT  166 (169)
Q Consensus       138 ~~~~~~g~tpl~~A~-----~~~~~li~~~~~~~  166 (169)
                      +.+|..|.||||+|+     +++++|++.|..+.
T Consensus       227 ~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp  260 (273)
T 2pnn_A          227 EITNRKGLTPLALAASSGKIGVLAYILQREIHEP  260 (273)
T ss_dssp             GCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--
T ss_pred             cccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCc
Confidence            468999999999995     99999999876543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.95  E-value=6.8e-27  Score=161.64  Aligned_cols=141  Identities=21%  Similarity=0.214  Sum_probs=128.9

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      ....+++++++.|...+....+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|++
T Consensus        83 ~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  161 (228)
T 2dzn_A           83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCG  161 (228)
T ss_dssp             CCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            34668889999986666666677899999999999999999999998 99999999999999999999999999999999


Q ss_pred             cC-CCCCccCCCCCChHHHHHhcChHHHHHHHH-hcCCCchhhhhhhhcccCCCCCcccchh--hHHHHhhhc
Q 030904           93 RG-ASLEAKDEDGAIPLHDACAGGFIEIVQLLI-NSASGTECVKRMLETVDAEGDTDCDDQN--DLVSLFIMQ  161 (169)
Q Consensus        93 ~g-~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~~~~g~tpl~~A~--~~~~~li~~  161 (169)
                      .| ++++.+|..|.||||+|+..|+.+++++|+ ++|+++       +.+|..|.||+++|.  +++++|++.
T Consensus       162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~-------~~~~~~g~t~l~~A~~~~~~~~l~~~  227 (228)
T 2dzn_A          162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY-------DLVDNKGAKAEDVALNEQVKKFFLNN  227 (228)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS-------CCBCTTSCBGGGGCSSTTHHHHHHTT
T ss_pred             cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCC-------CccCCCCCcHHHHHHHHHHHHHHHhc
Confidence            99 999999999999999999999999999999 899998       799999999999995  777887753

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=1.1e-27  Score=167.36  Aligned_cols=140  Identities=20%  Similarity=0.267  Sum_probs=111.7

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL   91 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll   91 (169)
                      ....+.++.+++.|+++++   ++.+.||||.|+..|+.+++++|++. +++++.++..|.||||+|+..|+.+++++|+
T Consensus        15 ~~~~~~~~~ll~~g~~~~~---~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll   90 (239)
T 1ycs_B           15 TNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLV   90 (239)
T ss_dssp             -------------------------CHHHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             hhhHHHHHHHhccCCCccc---CchhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3455678888999999986   46789999999999999999999988 8899999999999999999999999999999


Q ss_pred             HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCC-Ccccch-------hhHHHHhhhcc
Q 030904           92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGD-TDCDDQ-------NDLVSLFIMQQ  162 (169)
Q Consensus        92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~-tpl~~A-------~~~~~~li~~~  162 (169)
                      ++|++++.+|..|.||||+|+..|+.+++++|+++|+++       +.++..|. ||+|+|       .+++++|+..+
T Consensus        91 ~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~  162 (239)
T 1ycs_B           91 QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-------FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  162 (239)
T ss_dssp             HHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------ceecCCCCcchHHHHHHhhhccHHHHHHHHHhh
Confidence            999999999999999999999999999999999999998       78887777 999998       38999999843

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.95  E-value=7.7e-27  Score=164.20  Aligned_cols=141  Identities=16%  Similarity=0.185  Sum_probs=106.0

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      ...+++++|++.|++++..  +..|.||||+|+..|+.+++++|++....+++.++..|.||||+|+..++.+++++|++
T Consensus        68 g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  145 (253)
T 1yyh_A           68 SRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN  145 (253)
T ss_dssp             TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHH
Confidence            3455677777777776543  44667778888888888888887777334777777777888888887777778888888


Q ss_pred             cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904           93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus        93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      .|++++.++..|.||||+|+..|+.+++++|+++|+++       +.+|..|.||||+|+     +++++|++.|
T Consensus       146 ~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  213 (253)
T 1yyh_A          146 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-------DMQNNREETPLFLAAREGSYETAKVLLDHF  213 (253)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            88888877777888888888888888888888888776       677788888888874     7778887753

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=1.1e-27  Score=168.69  Aligned_cols=150  Identities=17%  Similarity=0.127  Sum_probs=128.4

Q ss_pred             ChHHHHHHHHhcCCCCcc---------cCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCC-------------
Q 030904           13 DSEEDNALFEEDGVNMDL---------ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVED-------------   70 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~---------~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~-------------   70 (169)
                      ...+++++|++.|++++.         ...+..|.||||+|+..|+.+++++|++. |++++.++..             
T Consensus        57 g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~  135 (256)
T 2etb_A           57 GVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN-GADVHLRACGRFFQKHQGTCFYF  135 (256)
T ss_dssp             TBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCSSSCCCS
T ss_pred             chHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcccccccccccccccccC
Confidence            445678888888777652         12346789999999999999999999998 9999998876             


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHH---cCCCCCccCCCCCChHHHHHh--cChHH-------HHHHHHhcCCCchhhhhhhh
Q 030904           71 GDTALHLTCLYGYLPCVQLLLE---RGASLEAKDEDGAIPLHDACA--GGFIE-------IVQLLINSASGTECVKRMLE  138 (169)
Q Consensus        71 g~~~L~~a~~~~~~~~~~~ll~---~g~~~~~~~~~~~t~l~~a~~--~~~~~-------~~~~ll~~~~~~~~~~~~~~  138 (169)
                      |.||||+|+..++.+++++|++   .|++++.+|..|+||||+|+.  .++.+       ++++|+++|++++....+.+
T Consensus       136 g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~  215 (256)
T 2etb_A          136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE  215 (256)
T ss_dssp             CSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGG
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccc
Confidence            9999999999999999999999   999999999999999999998  78888       99999999988622222226


Q ss_pred             cccCCCCCcccchh-----hHHHHhhhccc
Q 030904          139 TVDAEGDTDCDDQN-----DLVSLFIMQQE  163 (169)
Q Consensus       139 ~~~~~g~tpl~~A~-----~~~~~li~~~~  163 (169)
                      .+|..|.||||+|+     +++++|++++.
T Consensus       216 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  245 (256)
T 2etb_A          216 ISNHQGLTPLKLAAKEGKIEIFRHILQREF  245 (256)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence            88999999999995     99999999764

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.95  E-value=9e-27  Score=146.97  Aligned_cols=111  Identities=22%  Similarity=0.360  Sum_probs=104.5

Q ss_pred             CcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHh
Q 030904           34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACA  113 (169)
Q Consensus        34 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~  113 (169)
                      ...+.||||+|+..|+.+++++|++. +++++.++..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            34677999999999999999999998 89999999999999999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh
Q 030904          114 GGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN  152 (169)
Q Consensus       114 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~  152 (169)
                      .++.+++++|+++|+++       +.+|..|.||+|+|.
T Consensus        83 ~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADK-------TVKGPDGLTAFEATD  114 (123)
T ss_dssp             HTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHCC
T ss_pred             cCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHhC
Confidence            99999999999999998       799999999999995

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.95  E-value=1.5e-26  Score=160.34  Aligned_cols=138  Identities=24%  Similarity=0.288  Sum_probs=100.9

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER   93 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~   93 (169)
                      ..++++++++.|.+++.  .+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.
T Consensus        52 ~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  128 (231)
T 3aji_A           52 HTEIVEFLLQLGVPVND--KDDAGWSPLHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG  128 (231)
T ss_dssp             CHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cHHHHHHHHHhCCCCCC--cCCCCCCHHHHHHHcCHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            34566677777766654  344566777777777777777777776 777777777777777777777777777777777


Q ss_pred             CCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904           94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus        94 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      |++++..+..|.||||+|+..|+.+++++|+++|+++       +.+|..|.||||+|+     +++++|++.
T Consensus       129 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  194 (231)
T 3aji_A          129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST-------NIQDTEGNTPLHLACDEERVEEAKFLVTQ  194 (231)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-------CCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-------cccCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence            7777777777777777777777777777777777776       667777777777774     777777774

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=1.5e-27  Score=156.45  Aligned_cols=122  Identities=25%  Similarity=0.353  Sum_probs=106.6

Q ss_pred             CCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCC-hHHH
Q 030904           32 SETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAI-PLHD  110 (169)
Q Consensus        32 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t-~l~~  110 (169)
                      .....+.||||+|+..|+.+++++|++. +++++.++..|.||||+|+ .++.+++++|++.|++++.++..|.| |||+
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            3455677899999999999999999988 8899999999999999985 88999999999999999999999998 9999


Q ss_pred             HHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          111 ACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       111 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      |+..|+.+++++|+++|+++       +.+|..|.||||+|+     +++++|++.|
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~-------~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g  134 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARL-------DVRDAWGRLPVDLAEELGHRDVARYLRAAA  134 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCS-------SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC
T ss_pred             HHHCCCHHHHHHHHHcCCCC-------cccCCCCCCHHHHHHHhCHHHHHHHHHHcC
Confidence            99999999999999999987       788999999999984     8899998854

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=1.2e-26  Score=146.40  Aligned_cols=118  Identities=32%  Similarity=0.514  Sum_probs=112.5

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcCh
Q 030904           37 HLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGF  116 (169)
Q Consensus        37 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~  116 (169)
                      |.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            56899999999999999999998 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          117 IEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       117 ~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      .+++++|+++|+++       +.+|..|.||+++|+     +++++|++.|
T Consensus        81 ~~~~~~Ll~~g~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           81 LEVVKLLLEAGADV-------NAKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             HHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCC-------cccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            99999999999998       789999999999995     8999999875

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.94  E-value=1.6e-26  Score=160.26  Aligned_cols=146  Identities=21%  Similarity=0.221  Sum_probs=79.7

Q ss_pred             HHHHHHHHhcCCCCcc---cCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCC-------------CCCcHHHHH
Q 030904           15 EEDNALFEEDGVNMDL---ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVE-------------DGDTALHLT   78 (169)
Q Consensus        15 ~~~~~~l~~~g~~~~~---~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~-------------~g~~~L~~a   78 (169)
                      .+++++|++.|.++..   ...+..|.||||+|+..|+.+++++|++. +++++.++.             .|.||||+|
T Consensus        50 ~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  128 (232)
T 2rfa_A           50 LEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR-GASVSARATGSVFHYRPHNLIYYGEHPLSFA  128 (232)
T ss_dssp             HHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCTTCSCCCCSSHHHHH
T ss_pred             HHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhC-CCCCCcccCCcceeecccccccCCCCHHHHH
Confidence            4455555555554321   22233455666666666666666666655 555554433             456666666


Q ss_pred             HhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHH----HHHHhcCCCchhhhhhhhcccCCCCCcccchh--
Q 030904           79 CLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIV----QLLINSASGTECVKRMLETVDAEGDTDCDDQN--  152 (169)
Q Consensus        79 ~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~----~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~--  152 (169)
                      +..++.+++++|+++|++++.+|..|.||||+|+..++.+++    ++|+++|++.. ...+.+.+|..|.||||+|+  
T Consensus       129 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~-~~~~~~~~~~~g~tpl~~A~~~  207 (232)
T 2rfa_A          129 ACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH-LKSLELVPNNQGLTPFKLAGVE  207 (232)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS-SCCGGGCCCTTSCCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh-hhhhhccCCCCCCCHHHHHHHc
Confidence            666666666666666666666666666666666666665555    55555555431 00111355666666666663  


Q ss_pred             ---hHHHHhhhcc
Q 030904          153 ---DLVSLFIMQQ  162 (169)
Q Consensus       153 ---~~~~~li~~~  162 (169)
                         +++++|++++
T Consensus       208 g~~~~v~~Ll~~g  220 (232)
T 2rfa_A          208 GNIVMFQHLMQKR  220 (232)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcC
Confidence               6666666644

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.94  E-value=1.1e-26  Score=161.64  Aligned_cols=141  Identities=21%  Similarity=0.259  Sum_probs=127.2

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCC------CcccCCCCCcHHHHHHhcCCHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGS------IDEPVEDGDTALHLTCLYGYLPC   86 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~------~~~~~~~g~~~L~~a~~~~~~~~   86 (169)
                      ....++++|++.|++++..  +..|.||||+|+..|+.+++++|++. +.+      ++..+..|.||||+|+..++.++
T Consensus        56 ~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  132 (236)
T 1ikn_D           56 NQPEIAEALLGAGCDPELR--DFRGNTPLHLACEQGCLASVGVLTQS-CTTPHLHSILKATNYNGHTCLHLASIHGYLGI  132 (236)
T ss_dssp             TCHHHHHCCCSCCCCSCCC--CTTCCCHHHHHHHHTCHHHHHHHHHS-TTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhHHHHhhccCCCCCCHHHHHHHcCCHHH
Confidence            4467888899999888754  55788999999999999999999987 544      56678889999999999999999


Q ss_pred             HHHHHHcCCCCCccCC-CCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904           87 VQLLLERGASLEAKDE-DGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM  160 (169)
Q Consensus        87 ~~~ll~~g~~~~~~~~-~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~  160 (169)
                      +++|++.|++++.++. .|.||||+|+..|+.+++++|+++|+++       +.+|..|.|||++|+     +++++|++
T Consensus       133 v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  205 (236)
T 1ikn_D          133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-------NRVTYQGYSPYQLTWGRPSTRIQQQLGQ  205 (236)
T ss_dssp             HHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-------CCCCTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred             HHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------CcccCCCCCHHHHHHccCchHHHHHHHH
Confidence            9999999999999997 9999999999999999999999999998       799999999999995     99999999


Q ss_pred             ccc
Q 030904          161 QQE  163 (169)
Q Consensus       161 ~~~  163 (169)
                      .|.
T Consensus       206 ~ga  208 (236)
T 1ikn_D          206 LTL  208 (236)
T ss_dssp             TSC
T ss_pred             cch
Confidence            765

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.94  E-value=3.2e-26  Score=157.84  Aligned_cols=139  Identities=16%  Similarity=0.193  Sum_probs=88.6

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER   93 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~   93 (169)
                      ..++++++++.|.+++..  +..+.||||+|+..|+.+++++|++....+++.++..|.||||+|+..++.+++++|++.
T Consensus        37 ~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  114 (223)
T 2f8y_A           37 RSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS  114 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHc
Confidence            445666666666665533  345566677777777777777666663335666666666666666666666666666666


Q ss_pred             CCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904           94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus        94 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      |++++..+..|.||||+|+..|+.+++++|+++|+++       +.++..|.||||+|+     +++++|++.
T Consensus       115 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  180 (223)
T 2f8y_A          115 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-------DMQNNREETPLFLAAREGSYETAKVLLDH  180 (223)
T ss_dssp             TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-------CCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence            6666666666666666666666666666666666665       556666666666663     566666653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.94  E-value=1.4e-26  Score=164.57  Aligned_cols=137  Identities=20%  Similarity=0.214  Sum_probs=92.1

Q ss_pred             HHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCC-------------------------------
Q 030904           15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGS-------------------------------   63 (169)
Q Consensus        15 ~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~-------------------------------   63 (169)
                      ..++++|++.|++++..  +..|.||||+|+..|+.+++++|++. ++.                               
T Consensus        58 ~~~v~~Ll~~ga~~~~~--~~~g~tpL~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (282)
T 1oy3_D           58 ASTVEKLYAAGAGVLVA--ERGGHTALHLACRVRAHTCACVLLQP-RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP  134 (282)
T ss_dssp             HHHHHHHHHTTCCSSCC--CTTSCCHHHHHTTTTCHHHHHHHSSS-CCSSCCCC--------------------------
T ss_pred             HHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCcchhHhhhcc-CCCCchhhHHHHhhcccccCcchhcchhhhcccc
Confidence            44555666666655433  33555666666666666666666654 322                               


Q ss_pred             ----------------CcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCC-CCCChHHHHHhcChHHHHHHHHhc
Q 030904           64 ----------------IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDE-DGAIPLHDACAGGFIEIVQLLINS  126 (169)
Q Consensus        64 ----------------~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~-~~~t~l~~a~~~~~~~~~~~ll~~  126 (169)
                                      ++.++..|.||||+|+..++.+++++|++.|++++..+. .|.||||+|+..|+.+++++|+++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  214 (282)
T 1oy3_D          135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA  214 (282)
T ss_dssp             ---------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence                            444556667777777777777777777777777777664 377777777777777777777777


Q ss_pred             CCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904          127 ASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus       127 ~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      |+++       +.+|..|+||||+|+     +++++|++.
T Consensus       215 gad~-------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  247 (282)
T 1oy3_D          215 GADP-------TARMYGGRTPLGSALLRPNPILARLLRAH  247 (282)
T ss_dssp             TCCT-------TCCCTTSCCHHHHHHTSSCHHHHHHHHHT
T ss_pred             CCCC-------cccccCCCCHHHHHHHcCCcHHHHHHHHc
Confidence            7776       677777888888774     777777774

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.94  E-value=3.1e-26  Score=158.72  Aligned_cols=139  Identities=22%  Similarity=0.199  Sum_probs=127.2

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      ...++++++++.|.+++..  +..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus        84 ~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  160 (231)
T 3aji_A           84 GXDEIVKALLVKGAHVNAV--NQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHILLF  160 (231)
T ss_dssp             TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            3456888999999888754  55788999999999999999999998 99999999999999999999999999999999


Q ss_pred             cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904           93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus        93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      .|++++.+|..|.||||+|+..|+.+++++|+++|+++       +.+|..|.||+++|.     +++++|++.
T Consensus       161 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~A~~~~~~~i~~lL~~~  227 (231)
T 3aji_A          161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-------YIENKEEKTPLQVAKGGLGLILKRLAEGE  227 (231)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-------CCCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred             cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence            99999999999999999999999999999999999998       799999999999994     677777664

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.94  E-value=5.8e-26  Score=156.54  Aligned_cols=144  Identities=19%  Similarity=0.228  Sum_probs=130.0

Q ss_pred             CChHHHHHHHHhcCC-CCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH
Q 030904           12 DDSEEDNALFEEDGV-NMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLL   90 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~-~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~l   90 (169)
                      ....++++++++.+. +++.  .+..+.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|
T Consensus        68 ~~~~~~v~~Ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  144 (223)
T 2f8y_A           68 ADAQGVFQILIRNRATDLDA--RMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVL  144 (223)
T ss_dssp             TTCHHHHHHHHHBTTSCTTC--CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCccc--CCCCCCcHHHHHHHhCcHHHHHHHHHc-CCCCcCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            345668888888776 5543  456788999999999999999999998 999999999999999999999999999999


Q ss_pred             HHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhccccc
Q 030904           91 LERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQEVN  165 (169)
Q Consensus        91 l~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~~~~  165 (169)
                      ++.|++++.++..|.||||+|+..|+.+++++|+++|+++       +.++..|.||+++|+     +++++|++.+...
T Consensus       145 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          145 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR-------DITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             HHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-------ccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence            9999999999999999999999999999999999999998       789999999999995     9999999976543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.94  E-value=3.5e-26  Score=158.64  Aligned_cols=141  Identities=23%  Similarity=0.279  Sum_probs=122.4

Q ss_pred             ChHHHHHHHHhc-CCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCC-----cccCCCCCcHHHHHHhcCCHHH
Q 030904           13 DSEEDNALFEED-GVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSI-----DEPVEDGDTALHLTCLYGYLPC   86 (169)
Q Consensus        13 ~~~~~~~~l~~~-g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~-----~~~~~~g~~~L~~a~~~~~~~~   86 (169)
                      ....+++.+++. |.+++..  +..|.||||+|+..|+.+++++|++. ++++     +.++..|.||||+|+..++.++
T Consensus        14 g~~~~v~~Ll~~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~   90 (232)
T 2rfa_A           14 NDVQALSKLLKFEGCEVHQR--GAMGETALHIAALYDNLEAAMVLMEA-APELVFEPMTSELYEGQTALHIAVINQNVNL   90 (232)
T ss_dssp             TCHHHHHHHHTTTCSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCCCCSTTTTTCCHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHHhcCCCcccC--CCCCCCHHHHHHHcCCHHHHHHHHHc-CchhccccccccCCCCcCHHHHHHHcCCHHH
Confidence            345566666665 8887654  56888999999999999999999998 7665     5667899999999999999999


Q ss_pred             HHHHHHcCCCCCccCC-------------CCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-
Q 030904           87 VQLLLERGASLEAKDE-------------DGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-  152 (169)
Q Consensus        87 ~~~ll~~g~~~~~~~~-------------~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-  152 (169)
                      +++|++.|++++..+.             .|.||||+|+..|+.+++++|+++|+++       +.+|..|.||||+|+ 
T Consensus        91 v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~d~~g~t~L~~A~~  163 (232)
T 2rfa_A           91 VRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-------RAQDSLGNTVLHILIL  163 (232)
T ss_dssp             HHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHT
T ss_pred             HHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHH
Confidence            9999999999988765             7999999999999999999999999998       799999999999995 


Q ss_pred             ----hHH----HHhhhccc
Q 030904          153 ----DLV----SLFIMQQE  163 (169)
Q Consensus       153 ----~~~----~~li~~~~  163 (169)
                          +++    ++|++.+.
T Consensus       164 ~~~~~~~~~i~~~Ll~~g~  182 (232)
T 2rfa_A          164 QPNKTFACQMYNLLLSYDG  182 (232)
T ss_dssp             CSCHHHHHHHHHHHHHTTC
T ss_pred             cCChHHHHHHHHHHHhcCC
Confidence                554    99998654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.94  E-value=2e-26  Score=163.75  Aligned_cols=143  Identities=24%  Similarity=0.283  Sum_probs=126.7

Q ss_pred             CChHHHHHHHHhcCCCCc-ccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH
Q 030904           12 DDSEEDNALFEEDGVNMD-LESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLL   90 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~-~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~l   90 (169)
                      .....++++|++.|.+.+ ....+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|
T Consensus        19 ~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~~~~~~v~~L   97 (282)
T 1oy3_D           19 HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGHTALHLACRVRAHTCACVL   97 (282)
T ss_dssp             TTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTSCCHHHHHTTTTCHHHHHHH
T ss_pred             cCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCcchhHhh
Confidence            445678888998888854 345667889999999999999999999998 999999999999999999999999999999


Q ss_pred             HHcCCC-----------------------------------------------CCccCCCCCChHHHHHhcChHHHHHHH
Q 030904           91 LERGAS-----------------------------------------------LEAKDEDGAIPLHDACAGGFIEIVQLL  123 (169)
Q Consensus        91 l~~g~~-----------------------------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~l  123 (169)
                      ++.|++                                               ++..+..|.||||+|+..|+.+++++|
T Consensus        98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  177 (282)
T 1oy3_D           98 LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL  177 (282)
T ss_dssp             SSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHH
Confidence            998755                                               667788999999999999999999999


Q ss_pred             HhcCCCchhhhhhhhcccC-CCCCcccchh-----hHHHHhhhcc
Q 030904          124 INSASGTECVKRMLETVDA-EGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       124 l~~~~~~~~~~~~~~~~~~-~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      +++|+++       +.++. .|.||||+|+     +++++|++.|
T Consensus       178 l~~g~~~-------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  215 (282)
T 1oy3_D          178 RDAGADL-------NKPEPTCGRTPLHLAVEAQAASVLELLLKAG  215 (282)
T ss_dssp             HHHTCCT-------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHcCCCC-------CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999998       67764 4999999995     8999999953

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=1.5e-26  Score=164.91  Aligned_cols=142  Identities=21%  Similarity=0.288  Sum_probs=117.3

Q ss_pred             ChHHHHHHHHhcCC-CCcccCCCcchhHHHHHHH-----HcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHH
Q 030904           13 DSEEDNALFEEDGV-NMDLESETPPHLRDLAAAA-----QLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPC   86 (169)
Q Consensus        13 ~~~~~~~~l~~~g~-~~~~~~~~~~~~t~l~~a~-----~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~   86 (169)
                      ....++++|++.|. +++.  .+..|.||||+|+     ..++.++++.|++. +...+..+..|.||||+|+..|+.++
T Consensus       122 g~~~~v~~Ll~~g~~~~~~--~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~~~g~tpLh~A~~~g~~~~  198 (276)
T 4hbd_A          122 ANFPVVQQLLDSGVCKVDK--QNRAGYSPIMLTALATLKTQDDIETVLQLFRL-GNINAKASQAGQTALMLAVSHGRVDV  198 (276)
T ss_dssp             TCHHHHHHHHHTSCCCTTC--CCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHH-SCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHHCCCCcCCC--CCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHH
Confidence            34556677777766 5543  3456667777777     45667777777777 66677777789999999999999999


Q ss_pred             HHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHh-cCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904           87 VQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN-SASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM  160 (169)
Q Consensus        87 ~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~  160 (169)
                      +++|++.|++++.+|..|.||||+|+..|+.+++++|++ .|+++       +.+|..|.||||+|+     +++++|++
T Consensus       199 v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~-------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  271 (276)
T 4hbd_A          199 VKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDI-------SLTDRDGSTALMVALDAGQSEIASMLYS  271 (276)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCT-------TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC-------cCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999 89887       789999999999995     89999998


Q ss_pred             cccc
Q 030904          161 QQEV  164 (169)
Q Consensus       161 ~~~~  164 (169)
                      +.++
T Consensus       272 ~~~i  275 (276)
T 4hbd_A          272 RMNI  275 (276)
T ss_dssp             HCCC
T ss_pred             ccCC
Confidence            7664

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.94  E-value=4.3e-26  Score=163.55  Aligned_cols=140  Identities=24%  Similarity=0.393  Sum_probs=111.8

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      +...+++.+++.|++++..  +..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|++
T Consensus        51 g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  127 (299)
T 1s70_B           51 GDTEEVLRLLERGADINYA--NVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLDIAEYLIS  127 (299)
T ss_dssp             TCHHHHHHHHHHCCCTTCB--CTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            3455677777888877653  45677889999998899999988887 88888888888899999888888888888888


Q ss_pred             cCCCCCccCC------------------------------------------------------------CCCChHHHHH
Q 030904           93 RGASLEAKDE------------------------------------------------------------DGAIPLHDAC  112 (169)
Q Consensus        93 ~g~~~~~~~~------------------------------------------------------------~~~t~l~~a~  112 (169)
                      +|++++..+.                                                            .|.||||+|+
T Consensus       128 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~  207 (299)
T 1s70_B          128 QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAA  207 (299)
T ss_dssp             TTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHH
T ss_pred             CCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHH
Confidence            8887766553                                                            3567777788


Q ss_pred             hcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          113 AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       113 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      ..|+.+++++|+++|+++       +.+|..|.||||+|+     +++++|++.|
T Consensus       208 ~~g~~~~v~~Ll~~g~d~-------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  255 (299)
T 1s70_B          208 AKGYTEVLKLLIQARYDV-------NIKDYDGWTPLHAAAHWGKEEACRILVENL  255 (299)
T ss_dssp             HHTCHHHHHHHHTTTCCT-------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HCCcHHHHHHHHHcCCCC-------CCcCCCCCcHHHHHHhcCCHHHHHHHHHcC
Confidence            888888888888888887       678888888888884     8888888853

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.94  E-value=3.2e-26  Score=161.02  Aligned_cols=140  Identities=19%  Similarity=0.254  Sum_probs=126.7

Q ss_pred             ChHHHHHHHHhcCC-CCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904           13 DSEEDNALFEEDGV-NMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL   91 (169)
Q Consensus        13 ~~~~~~~~l~~~g~-~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll   91 (169)
                      ....++++|++.+. +++.  .+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|+
T Consensus       101 ~~~~~v~~Ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  177 (253)
T 1yyh_A          101 DAQGVFQILIRNRATDLDA--RMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLL  177 (253)
T ss_dssp             TCHHHHHHHHHSTTSCTTC--CCTTCCCHHHHHHHHTCSSHHHHHHHT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCccc--cCCCCCcHHHHHHHcChHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            34567888888776 5543  456788999999999999999999998 9999999999999999999999999999999


Q ss_pred             HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904           92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus        92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      +.|++++.++..|.||||+|+..|+.+++++|+++|+++       +.+|..|.||+++|+     +++++|....
T Consensus       178 ~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-------~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          178 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR-------DITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-------TCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-------cccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999998       799999999999995     9999988743

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.94  E-value=9.1e-26  Score=153.27  Aligned_cols=141  Identities=17%  Similarity=0.219  Sum_probs=123.2

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL   91 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll   91 (169)
                      ++.+.+..++...+.+++.  .+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|+
T Consensus        16 g~~~~v~~ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll   92 (201)
T 3hra_A           16 RDTKKVKEILQDTTYQVDE--VDTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQNSISDSPYLYAGAQGRTEILAYML   92 (201)
T ss_dssp             TCHHHHHHHHTCTTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHcCCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            4455555555554446654  455788999999999999999999998 9999999999999999999999999999999


Q ss_pred             -HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcC-CCchhhhhhhhcccCCCCCcccchh----------hHHHHhh
Q 030904           92 -ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSA-SGTECVKRMLETVDAEGDTDCDDQN----------DLVSLFI  159 (169)
Q Consensus        92 -~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~~~~g~tpl~~A~----------~~~~~li  159 (169)
                       ..+++++..+..|.||||+|+..|+.+++++|++.| .++       +.++..|.||||+|+          +++++|+
T Consensus        93 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll  165 (201)
T 3hra_A           93 KHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI-------DFQNDFGYTALIEAVGLREGNQLYQDIVKLLM  165 (201)
T ss_dssp             HHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCT-------TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHH
T ss_pred             hccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-------CCCCCCCCCHHHHHHHhccchhhHHHHHHHHH
Confidence             456799999999999999999999999999999999 776       789999999999995          7899999


Q ss_pred             hcc
Q 030904          160 MQQ  162 (169)
Q Consensus       160 ~~~  162 (169)
                      +.|
T Consensus       166 ~~g  168 (201)
T 3hra_A          166 ENG  168 (201)
T ss_dssp             HTT
T ss_pred             HCC
Confidence            854

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.94  E-value=1.1e-25  Score=161.00  Aligned_cols=138  Identities=25%  Similarity=0.354  Sum_probs=108.0

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER   93 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~   93 (169)
                      ...++++|++.|.+++..   ..+.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.
T Consensus       137 ~~~~v~~Ll~~g~~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  212 (285)
T 3d9h_A          137 SWDCVNLLLQHGASVQPE---SDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLES  212 (285)
T ss_dssp             CHHHHHHHHHTTCCSSCS---CTTSCHHHHHHHHTCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCCCCC---CCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC
Confidence            345677777777776532   2367788888888888888888877 778888888888888888888888888888888


Q ss_pred             CCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh---hHHHHhhhccc
Q 030904           94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN---DLVSLFIMQQE  163 (169)
Q Consensus        94 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~---~~~~~li~~~~  163 (169)
                      |++++. +..|.||||+|+..++.+++++|+++|+++       +.+|..|.|||++|+   +++++|++..+
T Consensus       213 ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-------~~~d~~g~t~l~~A~~~~~~~~~Ll~~~~  277 (285)
T 3d9h_A          213 GADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADT-------QAKNAEGKRPVELVPPESPLAQLFLEREG  277 (285)
T ss_dssp             TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCGGGGSCTTSHHHHHHHHHC-
T ss_pred             CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------CCcCCCCCCHHHHhcCccHHHHHHHHhhc
Confidence            888874 777888888888888888888888888887       788888888888884   88888888643

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.94  E-value=6.9e-26  Score=157.70  Aligned_cols=139  Identities=25%  Similarity=0.286  Sum_probs=94.3

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCC----CCcccCCCCCcHHHHHHhcCCHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSG----SIDEPVEDGDTALHLTCLYGYLPCVQ   88 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~----~~~~~~~~g~~~L~~a~~~~~~~~~~   88 (169)
                      ...+++++|++.|.+++..  +..+.||||+|+..|+.+++++|++. +.    +++.++..|.||||+|+..++.++++
T Consensus        57 ~~~~~v~~Ll~~g~~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  133 (241)
T 1k1a_A           57 TLPSVVRLLVTAGASPMAL--DRHGQTAAHLACEHRSPTCLRALLDS-AAPGTLDLEARNYDGLTALHVAVNTECQETVQ  133 (241)
T ss_dssp             TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHH-SCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCHHHHHHHHHcCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccccccCcCCCcHHHHHHHcCCHHHHH
Confidence            3455666777777666543  44566777777777777777777766 43    56666666777777777777777777


Q ss_pred             HHHHcCCCCCccC-CCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904           89 LLLERGASLEAKD-EDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus        89 ~ll~~g~~~~~~~-~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      +|++.|++++..+ ..|.||||+|+..|+.+++++|+++|+++       +.++..|.||||+|+     +++++|++.
T Consensus       134 ~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  205 (241)
T 1k1a_A          134 LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-------NAQMYSGSSALHSASGRGLLPLVRTLVRS  205 (241)
T ss_dssp             HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            7777777776666 56777777777777777777777777665       566667777777763     666777663

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=1.7e-26  Score=156.14  Aligned_cols=124  Identities=20%  Similarity=0.266  Sum_probs=116.6

Q ss_pred             cCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHH
Q 030904           31 ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHD  110 (169)
Q Consensus        31 ~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~  110 (169)
                      +..+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.|++++..+..|.||||+
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  107 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW  107 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            34566888999999999999999999998 89999999999999999999999999999999999999999999999999


Q ss_pred             HHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          111 ACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       111 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      |+..|+.+++++|+++|+++       +.++..|.||||+|+     +++++|++.+
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  157 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANV-------NDRNLEGETPLIVASKYGRSEIVKKLLELG  157 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCS-------SCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            99999999999999999998       799999999999995     8999999853

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=3.3e-26  Score=151.41  Aligned_cols=119  Identities=21%  Similarity=0.313  Sum_probs=112.9

Q ss_pred             chhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcC
Q 030904           36 PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGG  115 (169)
Q Consensus        36 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~  115 (169)
                      .+.||||.|+..|+.+++++|++. +.+++.++..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            466899999999999999999999 8899999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          116 FIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       116 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      +.+++++|+++|+++       +.++..|.||||+|+     +++++|++.+
T Consensus        81 ~~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  125 (167)
T 3v31_A           81 YTDIVKMLLDCGVDV-------NEYDWNGGTPLLYAVHGNHVKCVKMLLESG  125 (167)
T ss_dssp             CHHHHHHHHHHTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHCCCCC-------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999998       789999999999995     9999999853

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=1.1e-25  Score=149.34  Aligned_cols=122  Identities=28%  Similarity=0.424  Sum_probs=113.8

Q ss_pred             CCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHH
Q 030904           33 ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC  112 (169)
Q Consensus        33 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~  112 (169)
                      ....+.++|+.|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            355678999999999999999999998 9999999999999999999999999999999999999999999999999999


Q ss_pred             hcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          113 AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       113 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      ..|+.+++++|+++|+++       +.+|..|.||||+|+     +++++|++.+
T Consensus        89 ~~~~~~~~~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  136 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADV-------NANDMEGHTPLHLAAMFGHLEIVEVLLKNG  136 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHcCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999997       789999999999995     9999999854

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.94  E-value=1.6e-25  Score=155.71  Aligned_cols=139  Identities=23%  Similarity=0.309  Sum_probs=91.4

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER   93 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~   93 (169)
                      ..++++++++.|.+++..  +..+.||||+|+..|+.+++++|++.+..+++.++..|.||||+|+..++.+++++|++.
T Consensus        56 ~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  133 (237)
T 3b7b_A           56 HLEAVKYLIKAGALVDPK--DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK  133 (237)
T ss_dssp             CHHHHHHHHTTTCCCCCC--CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CHHHHHHHHhCCCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            344556666666655432  334556666666666666666666663356666666666777777666666677777766


Q ss_pred             CCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904           94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus        94 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      |++++.++..|.||||+|+..|+.+++++|++.|+++       +.+|..|.||||+|+     +++++|++.
T Consensus       134 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  199 (237)
T 3b7b_A          134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-------HAVNIHGDSPLHIAARENRYDCVVLFLSR  199 (237)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCT-------TCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHhCCHhHHHHHHHc
Confidence            6666666666777777777777777777777766665       566777777777774     677777764

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.94  E-value=1.9e-25  Score=155.48  Aligned_cols=139  Identities=24%  Similarity=0.289  Sum_probs=96.0

Q ss_pred             hHHHHHHHHhcCCC--CcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHHHHHH
Q 030904           14 SEEDNALFEEDGVN--MDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV-EDGDTALHLTCLYGYLPCVQLL   90 (169)
Q Consensus        14 ~~~~~~~l~~~g~~--~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~~g~~~L~~a~~~~~~~~~~~l   90 (169)
                      ...+++.+++.+..  .+....+..+.||||+|+..|+.+++++|++. +++++..+ ..|.||||+|+..++.+++++|
T Consensus        91 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  169 (241)
T 1k1a_A           91 SPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVENNSLSMVQLL  169 (241)
T ss_dssp             CHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccccCCCcHHHHHHHcCCHHHHHHH
Confidence            44566666666652  23334455666777777777777777777776 77777666 6677777777777777777777


Q ss_pred             HHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904           91 LERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM  160 (169)
Q Consensus        91 l~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~  160 (169)
                      ++.|++++.++..|.||||+|+..|+.+++++|+++|+++       +.+|..|.||+++|+     ++++.|.+
T Consensus       170 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~tpl~~A~~~~~~~i~~~l~~  237 (241)
T 1k1a_A          170 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-------SLKNCHNDTPLMVARSRRVIDILRGKAT  237 (241)
T ss_dssp             HHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-------TCCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC-------CCcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence            7777777777777777777777777777777777777776       677777777777774     55555544

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.94  E-value=4.1e-26  Score=163.27  Aligned_cols=141  Identities=16%  Similarity=0.121  Sum_probs=119.7

Q ss_pred             CCCCChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHH
Q 030904            9 MEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ   88 (169)
Q Consensus         9 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~   88 (169)
                      +...+...+.+++.+.+  +  ...+..|.||||+|+..|+.+++++|++. |++++.+  +|.||||+|+..|+.++++
T Consensus         7 i~~~~~~~v~~lL~~~~--~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~--~g~t~L~~A~~~g~~~~v~   79 (285)
T 3kea_A            7 INTWKSKQLKSFLSSKD--T--FKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL--ENEFPLHQAATLEDTKIVK   79 (285)
T ss_dssp             GGGCCHHHHHHHHHSTT--T--TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCC--TTCCHHHHHTTSSSCHHHH
T ss_pred             HHhcCHHHHHHHHHhCC--C--CccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC--CCCCHHHHHHHcCCHHHHH
Confidence            34556777888777653  3  34566888999999999999999999988 8888876  4899999999999999999


Q ss_pred             HHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCC-CCcccchh-----hHHHHhhhcc
Q 030904           89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEG-DTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus        89 ~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g-~tpl~~A~-----~~~~~li~~~  162 (169)
                      +|++.|++++.++..|.||||+|+..|+.+++++|+++|+++       +.++..| .||||+|+     +++++|++.+
T Consensus        80 ~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-------~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g  152 (285)
T 3kea_A           80 ILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-------MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI  152 (285)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-------GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-------CccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999887       7888888 79999885     8888888865


Q ss_pred             c
Q 030904          163 E  163 (169)
Q Consensus       163 ~  163 (169)
                      .
T Consensus       153 ~  153 (285)
T 3kea_A          153 P  153 (285)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.94  E-value=2.6e-26  Score=161.60  Aligned_cols=139  Identities=19%  Similarity=0.199  Sum_probs=121.6

Q ss_pred             HHHHHHHhcCCCCccc--CCCcchhHHHHHHHHc---CCHHHHHHHHHhCCCCCcc-----------cCCCCCcHHHHHH
Q 030904           16 EDNALFEEDGVNMDLE--SETPPHLRDLAAAAQL---GDVHSLRLALDNLSGSIDE-----------PVEDGDTALHLTC   79 (169)
Q Consensus        16 ~~~~~l~~~g~~~~~~--~~~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~-----------~~~~g~~~L~~a~   79 (169)
                      .+++++++.|.+++..  ..+..|.||||+|+..   |+.+++++|++. +++++.           ++..|.||||+|+
T Consensus        20 ~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~   98 (256)
T 2etb_A           20 GLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI-DKDSGNPKPLVNAQCTDEFYQGHSALHIAI   98 (256)
T ss_dssp             THHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HHHTTCSSCGGGCCCCSTTTTTCCHHHHHH
T ss_pred             HHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc-CCcccchhhhcccccccccccCCCHHHHHH
Confidence            4677888889888741  1466888999999999   999999999988 665542           3467999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCccCCC-------------CCChHHHHHhcChHHHHHHHHh---cCCCchhhhhhhhcccCC
Q 030904           80 LYGYLPCVQLLLERGASLEAKDED-------------GAIPLHDACAGGFIEIVQLLIN---SASGTECVKRMLETVDAE  143 (169)
Q Consensus        80 ~~~~~~~~~~ll~~g~~~~~~~~~-------------~~t~l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~~~~~~  143 (169)
                      ..++.+++++|++.|++++.++..             |.||||+|+..|+.+++++|++   .|+++       +.+|..
T Consensus        99 ~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-------n~~d~~  171 (256)
T 2etb_A           99 EKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-------EATDSL  171 (256)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-------TCCCTT
T ss_pred             HcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-------CccCCC
Confidence            999999999999999999998876             9999999999999999999999   89998       899999


Q ss_pred             CCCcccchhh--------------HHHHhhhcc
Q 030904          144 GDTDCDDQND--------------LVSLFIMQQ  162 (169)
Q Consensus       144 g~tpl~~A~~--------------~~~~li~~~  162 (169)
                      |+||||+|+.              ++++|++.|
T Consensus       172 g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g  204 (256)
T 2etb_A          172 GNTVLHALVMIADNSPENSALVIHMYDGLLQMG  204 (256)
T ss_dssp             SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC
Confidence            9999999963              999999853

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=9.5e-26  Score=150.92  Aligned_cols=121  Identities=24%  Similarity=0.415  Sum_probs=111.9

Q ss_pred             cchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhc
Q 030904           35 PPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAG  114 (169)
Q Consensus        35 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~  114 (169)
                      +.+.++|+.|+..|+.+.+++|++..+.+++.++..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            35678899999999999999999987788999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          115 GFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       115 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      |+.+++++|+++|+++       +.+|..|.||||+|+     +++++|++.+
T Consensus        83 ~~~~~v~~Ll~~g~~~-------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  128 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADI-------NAVNEHGNVPLHYACFWGQDQVAEDLVANG  128 (179)
T ss_dssp             TCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCC-------CccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            9999999999999998       799999999999995     9999999854

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=1.3e-25  Score=148.28  Aligned_cols=122  Identities=27%  Similarity=0.411  Sum_probs=114.1

Q ss_pred             CcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHh
Q 030904           34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACA  113 (169)
Q Consensus        34 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~  113 (169)
                      +..+.++||.|+..|+.+.++.|++..+.+++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            55788999999999999999999997677888888999999999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          114 GGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       114 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      .|+.+++++|+++|+++       +.+|..|.||||+|+     +++++|++.+
T Consensus        85 ~~~~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  131 (165)
T 3twr_A           85 YGHYEVAELLVKHGAVV-------NVADLWKFTPLHEAAAKGKYEICKLLLQHG  131 (165)
T ss_dssp             TTCHHHHHHHHHTTCCT-------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCcHHHHHHHHhCCCCC-------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            99999999999999998       789999999999995     9999999854

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=4.8e-25  Score=156.51  Aligned_cols=143  Identities=22%  Similarity=0.295  Sum_probs=130.1

Q ss_pred             ChHHHHHHHHhcCCCCcccCC--------CcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC-
Q 030904           13 DSEEDNALFEEDGVNMDLESE--------TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGY-   83 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~--------~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~-   83 (169)
                      ....+++++++.|.+++....        +..+.||||+|+..|+.+++++|++..+++++.++..|.||||+|+..++ 
T Consensus       116 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  195 (285)
T 1wdy_A          116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD  195 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT
T ss_pred             CCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc
Confidence            456788889999998876432        45678999999999999999999988789999999999999999999998 


Q ss_pred             ---HHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHh-cCCCchhhhhhhhcccCCCCCcccchh-----hH
Q 030904           84 ---LPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN-SASGTECVKRMLETVDAEGDTDCDDQN-----DL  154 (169)
Q Consensus        84 ---~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~  154 (169)
                         .+++++|++.|++++.++..|.||||+|+..|+.+++++|++ .|+++       +.+|..|.||||+|+     ++
T Consensus       196 ~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-------~~~~~~g~t~l~~A~~~~~~~i  268 (285)
T 1wdy_A          196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-------NDTDSDGKTALLLAVELKLKKI  268 (285)
T ss_dssp             TTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCT-------TCCCTTSCCHHHHHHHTTCHHH
T ss_pred             chHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCc-------cccCCCCCcHHHHHHHcCcHHH
Confidence               889999999999999999999999999999999999999999 88887       799999999999995     89


Q ss_pred             HHHhhhcc
Q 030904          155 VSLFIMQQ  162 (169)
Q Consensus       155 ~~~li~~~  162 (169)
                      +++|++.|
T Consensus       269 ~~~Ll~~G  276 (285)
T 1wdy_A          269 AELLCKRG  276 (285)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHcC
Confidence            99999954

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.93  E-value=5.9e-26  Score=167.22  Aligned_cols=143  Identities=13%  Similarity=0.106  Sum_probs=126.7

Q ss_pred             ChHHHHHHHHhc----CCCCcc---------------cCCCcchhHHHHHHHHcC--CHHHHHHHHHhCCCCCcccCCCC
Q 030904           13 DSEEDNALFEED----GVNMDL---------------ESETPPHLRDLAAAAQLG--DVHSLRLALDNLSGSIDEPVEDG   71 (169)
Q Consensus        13 ~~~~~~~~l~~~----g~~~~~---------------~~~~~~~~t~l~~a~~~g--~~~~~~~ll~~~~~~~~~~~~~g   71 (169)
                      ....++++|++.    |.+++.               ...+..|.||||+|+..|  +.+++++|++. |++++.++..|
T Consensus        95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~d~~g  173 (364)
T 3ljn_A           95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAKDKAD  173 (364)
T ss_dssp             TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCCCTTS
T ss_pred             CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcccCCCC
Confidence            345566677766    555442               113556889999999999  99999999999 99999999999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHcCCC-----CCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCC
Q 030904           72 DTALHLTCLYGYLPCVQLLLERGAS-----LEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDT  146 (169)
Q Consensus        72 ~~~L~~a~~~~~~~~~~~ll~~g~~-----~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~t  146 (169)
                      .||||+|+..++.+++++|++.|++     ++..+..|.||||+|+..|+.+++++|+++|+++       +.+|..|.|
T Consensus       174 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-------~~~d~~g~t  246 (364)
T 3ljn_A          174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV-------NMEDNEHTV  246 (364)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT-------TCCCTTSCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-------CCCCCCCCC
Confidence            9999999999999999999999998     9999999999999999999999999999999998       799999999


Q ss_pred             cccchh-----hHHHHhhhccc
Q 030904          147 DCDDQN-----DLVSLFIMQQE  163 (169)
Q Consensus       147 pl~~A~-----~~~~~li~~~~  163 (169)
                      |||+|+     +++++|++.+.
T Consensus       247 pL~~A~~~g~~~~v~~Ll~~~~  268 (364)
T 3ljn_A          247 PLYLSVRAAMVLLTKELLQKTD  268 (364)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHSC
T ss_pred             HHHHHHHhChHHHHHHHHHcCC
Confidence            999995     99999999753

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.93  E-value=4e-25  Score=153.64  Aligned_cols=140  Identities=21%  Similarity=0.320  Sum_probs=128.1

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      +..++++.+++.|.+++..  +..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus        22 g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~   98 (237)
T 3b7b_A           22 GHVDICHMLVQAGANIDTC--SEDQRTPLMEAAENNHLEAVKYLIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS   98 (237)
T ss_dssp             TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHTT-TCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CcHHHHHHHHHcCCCcCcc--CCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            4456888899999888654  55788999999999999999999988 99999999999999999999999999999999


Q ss_pred             cC-CCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904           93 RG-ASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus        93 ~g-~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      .| .+++..+..|.||||+|+..++.+++++|++.|.++       +.++..|.||||+|+     +++++|++.+
T Consensus        99 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  167 (237)
T 3b7b_A           99 NGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-------NIRDNEENICLHWAAFSGCVDIAEILLAAK  167 (237)
T ss_dssp             TTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHHCCHHHHHHHHTTT
T ss_pred             CCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------CccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            98 899999999999999999999999999999999997       789999999999995     8999999853

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.93  E-value=2.6e-25  Score=159.07  Aligned_cols=137  Identities=23%  Similarity=0.320  Sum_probs=97.0

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER   93 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~   93 (169)
                      ...+++.|++.|.+++..  +..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.
T Consensus        71 ~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  147 (285)
T 3d9h_A           71 HQLSLRNLISQGWAVNII--TADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH  147 (285)
T ss_dssp             CHHHHHHHHHTTCCSCEE--CTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHC
Confidence            445677777777776543  44667788888888888888888877 777777777777777777777777777777777


Q ss_pred             CCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904           94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus        94 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      |++++..+ .|.||||+|+..|+.+++++|++.|+++       +.++..|.||||+|+     +++++|++.
T Consensus       148 g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  212 (285)
T 3d9h_A          148 GASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNI-------DHKISHLGTPLYLACENQQRACVKKLLES  212 (285)
T ss_dssp             TCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCT-------TCCBTTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC-------CCcCCCCCCHHHHHHHcCcHHHHHHHHHC
Confidence            77766543 3677777777777777777777777665       566666666666663     566666653

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2.9e-25  Score=145.23  Aligned_cols=122  Identities=26%  Similarity=0.386  Sum_probs=113.1

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcCh
Q 030904           37 HLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGF  116 (169)
Q Consensus        37 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~  116 (169)
                      +.++||.|+..|+.+.+++|++..+.+++.++..|.||||+ +..++.+++++|++.|++++.+|..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            46899999999999999999998566899999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcccccc
Q 030904          117 IEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQEVNT  166 (169)
Q Consensus       117 ~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~~~~~  166 (169)
                      .+++++|++.|+++       +.+|..|.||||+|+     +++++|++..+++.
T Consensus        81 ~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~  128 (156)
T 1bd8_A           81 LDTLKVLVEHGADV-------NVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHR  128 (156)
T ss_dssp             HHHHHHHHHTTCCS-------CCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHcCCCC-------CCcCCCCCcHHHHHHHhChHHHHHHHHhccCCCC
Confidence            99999999999998       789999999999995     99999998755443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=6.9e-26  Score=159.67  Aligned_cols=138  Identities=21%  Similarity=0.234  Sum_probs=120.2

Q ss_pred             HHHHHHhcCCCCcccCC--CcchhHHHHHHH---HcCCHHHHHHHHHhCCC-----------CCcccCCCCCcHHHHHHh
Q 030904           17 DNALFEEDGVNMDLESE--TPPHLRDLAAAA---QLGDVHSLRLALDNLSG-----------SIDEPVEDGDTALHLTCL   80 (169)
Q Consensus        17 ~~~~l~~~g~~~~~~~~--~~~~~t~l~~a~---~~g~~~~~~~ll~~~~~-----------~~~~~~~~g~~~L~~a~~   80 (169)
                      +++++.+.|.+++....  +..|.||||+|+   ..|+.+++++|++. ++           ..+..+..|+||||+|+.
T Consensus        24 ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~  102 (260)
T 3jxi_A           24 LLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI-AEKTGNMREFINSPFRDVYYRGQTALHIAIE  102 (260)
T ss_dssp             HHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH-HHHTTCHHHHHTCCBCCSSEESBCHHHHHHH
T ss_pred             HHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh-cccccchHhhhcccccccccCCCCHHHHHHH
Confidence            56666678888876542  367899999999   67999999999987 43           344455689999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCccC--------------CCCCChHHHHHhcChHHHHHHHHh---cCCCchhhhhhhhcccCC
Q 030904           81 YGYLPCVQLLLERGASLEAKD--------------EDGAIPLHDACAGGFIEIVQLLIN---SASGTECVKRMLETVDAE  143 (169)
Q Consensus        81 ~~~~~~~~~ll~~g~~~~~~~--------------~~~~t~l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~~~~~~  143 (169)
                      .|+.+++++|++.|++++..+              ..|.||||+|+..|+.+++++|++   .|+++       +.+|..
T Consensus       103 ~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-------~~~d~~  175 (260)
T 3jxi_A          103 RRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-------RRQDSR  175 (260)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-------TCCCTT
T ss_pred             cCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-------cccCCC
Confidence            999999999999999999998              689999999999999999999999   89997       899999


Q ss_pred             CCCcccchh--------------hHHHHhhhcc
Q 030904          144 GDTDCDDQN--------------DLVSLFIMQQ  162 (169)
Q Consensus       144 g~tpl~~A~--------------~~~~~li~~~  162 (169)
                      |+||||+|+              +++++|++.|
T Consensus       176 g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g  208 (260)
T 3jxi_A          176 GNTVLHALVAIADNTRENTKFVTKMYDLLLIKC  208 (260)
T ss_dssp             SCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC
Confidence            999999997              7999999853

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.93  E-value=3.1e-25  Score=163.39  Aligned_cols=139  Identities=22%  Similarity=0.268  Sum_probs=112.0

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcc---------------------------
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDE---------------------------   66 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~---------------------------   66 (169)
                      ...++++|++.|++++..  +..|.||||+|+..|+.+++++|++. +++++.                           
T Consensus        32 ~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~  108 (364)
T 3ljn_A           32 QTDEVRRLIETGVSPTIQ--NRFGCTALHLACKFGCVDTAKYLASV-GEVHSLWHGQKPIHLAVMANKTDLVVALVEGAK  108 (364)
T ss_dssp             CHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHCCHHHHHHHHHH-CCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCcccc--CCCCCcHHHHHHHcCCHHHHHHHHHC-CCCccccCCCCHHHHHHHcCCHHHHHHHHHhcc
Confidence            345677777777766543  44667778877777777777777776 554443                           


Q ss_pred             -------------------------cCCCCCcHHHHHHhcC--CHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHH
Q 030904           67 -------------------------PVEDGDTALHLTCLYG--YLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEI  119 (169)
Q Consensus        67 -------------------------~~~~g~~~L~~a~~~~--~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~  119 (169)
                                               ++..|.||||+|+..|  +.+++++|++.|++++.+|..|.||||+|+..|+.++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~  188 (364)
T 3ljn_A          109 ERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREA  188 (364)
T ss_dssp             HHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHH
Confidence                                     6667889999999998  8899999999999999999999999999999999999


Q ss_pred             HHHHHhcCCC-----chhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          120 VQLLINSASG-----TECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       120 ~~~ll~~~~~-----~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      +++|+++|++     +       +.++..|.||||+|+     +++++|++.|
T Consensus       189 v~~Ll~~g~~~~~~~~-------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  234 (364)
T 3ljn_A          189 LDLMMDTVPSKSSLRL-------DYANKQGNSHLHWAILINWEDVAMRFVEMG  234 (364)
T ss_dssp             HHHHHHHCSCSSSCCT-------TCCCTTCCCTTHHHHTTTCHHHHHHHHTTT
T ss_pred             HHHHHhcccccccccc-------cccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            9999998887     6       788899999999995     8999999853

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.93  E-value=8.5e-25  Score=156.81  Aligned_cols=140  Identities=25%  Similarity=0.352  Sum_probs=121.9

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccC-----------------------
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV-----------------------   68 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-----------------------   68 (169)
                      .....++++|++.|++++..  +..|.||||+|+..|+.+++++|++. |++++.++                       
T Consensus        83 ~g~~~~v~~Ll~~ga~~~~~--~~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll  159 (299)
T 1s70_B           83 DDNVDMVKFLVENGANINQP--DNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEV  159 (299)
T ss_dssp             TTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHhcchHHHHHHHH
Confidence            34567899999999988754  55788999999999999999999998 87776544                       


Q ss_pred             -------------------------------------CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHH
Q 030904           69 -------------------------------------EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDA  111 (169)
Q Consensus        69 -------------------------------------~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a  111 (169)
                                                           ..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A  239 (299)
T 1s70_B          160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAA  239 (299)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHH
T ss_pred             hhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence                                                 3477889999999999999999999999999999999999999


Q ss_pred             HhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh----hHHHHhhhc
Q 030904          112 CAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN----DLVSLFIMQ  161 (169)
Q Consensus       112 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~----~~~~~li~~  161 (169)
                      +..|+.+++++|+++|+++       +.+|..|.||+++|.    +++..++.+
T Consensus       240 ~~~~~~~~v~~Ll~~gad~-------~~~d~~g~t~l~~A~~~~~~~l~~l~~~  286 (299)
T 1s70_B          240 AHWGKEEACRILVENLCDM-------EAVNKVGQTAFDVADEDILGYLEELQKK  286 (299)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-------TCCCTTSCCTTTSCCSGGGHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998       799999999999995    455554443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.93  E-value=2.1e-25  Score=146.73  Aligned_cols=120  Identities=29%  Similarity=0.405  Sum_probs=112.4

Q ss_pred             chhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcC
Q 030904           36 PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGG  115 (169)
Q Consensus        36 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~  115 (169)
                      ...+|||.|+..|+.+++++|++. +++++.++..|.||||+|+. ++.+++++|++.|++++.++..|.||||+|+..|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhC-CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            345899999999999999999987 99999999999999999999 9999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcccc
Q 030904          116 FIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQEV  164 (169)
Q Consensus       116 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~~~  164 (169)
                      +.+++++|+++|+++       +.++..|.||||+|+     +++++|++.+..
T Consensus        82 ~~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  128 (162)
T 1ihb_A           82 FLDTLQTLLEFQADV-------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS  128 (162)
T ss_dssp             CHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             CHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC
Confidence            999999999999997       799999999999995     999999997653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=5.9e-26  Score=153.08  Aligned_cols=118  Identities=14%  Similarity=0.068  Sum_probs=106.2

Q ss_pred             cchhHHHHHHHHcCCH----HHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC------HHHHHHHHHcCCCCCccCCCC
Q 030904           35 PPHLRDLAAAAQLGDV----HSLRLALDNLSGSIDEPVEDGDTALHLTCLYGY------LPCVQLLLERGASLEAKDEDG  104 (169)
Q Consensus        35 ~~~~t~l~~a~~~g~~----~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~------~~~~~~ll~~g~~~~~~~~~~  104 (169)
                      ..|.||||+|+..|+.    +++++|++. |++++.++..|+||||+|+..++      .+++++|++.|++++.+|..|
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g  114 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINK-GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPY  114 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGG
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCc
Confidence            5689999999999975    589999998 99999999999999999999886      478999999999999999999


Q ss_pred             C-ChHHHHHhcC-----hHHHHHHHHh-cCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904          105 A-IPLHDACAGG-----FIEIVQLLIN-SASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM  160 (169)
Q Consensus       105 ~-t~l~~a~~~~-----~~~~~~~ll~-~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~  160 (169)
                      . ||||+|+..+     +.+++++|++ +|+++       +.+|..|.||||+|+     +++++|..
T Consensus       115 ~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-------~~~d~~G~TpL~~A~~~~~~~~v~~L~~  175 (186)
T 3t8k_A          115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-------LIKDKWGLTALEFVKRCQKPIALKMMED  175 (186)
T ss_dssp             TBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-------TCCCTTSCCHHHHHHTTTCHHHHHHHHH
T ss_pred             CchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-------cccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9 9999999844     4679999999 99998       899999999999995     67777765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=1.2e-24  Score=154.48  Aligned_cols=149  Identities=17%  Similarity=0.261  Sum_probs=127.7

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL   91 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll   91 (169)
                      .+..++++.+++.|.+++.. .+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|+
T Consensus        15 ~g~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   92 (285)
T 1wdy_A           15 NEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGATPFLLAAIAGSVKLLKLFL   92 (285)
T ss_dssp             TTCHHHHHHHHHTTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCcccc-cCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            34566888888989888753 245678999999999999999999998 9999999999999999999999999999999


Q ss_pred             HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhh---hhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904           92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVK---RMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus        92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~---~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      ++|++++..+..|.||||+|+..|+.+++++|++.|.+++...   ......+..|.||||.|+     +++++|++..
T Consensus        93 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  171 (285)
T 1wdy_A           93 SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM  171 (285)
T ss_dssp             HTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTS
T ss_pred             HcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999873100   001112788999999995     8999999863

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=7e-26  Score=156.39  Aligned_cols=121  Identities=26%  Similarity=0.319  Sum_probs=108.2

Q ss_pred             cchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCccCCCCCChHHHHHh
Q 030904           35 PPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER-GASLEAKDEDGAIPLHDACA  113 (169)
Q Consensus        35 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~-g~~~~~~~~~~~t~l~~a~~  113 (169)
                      ..+.||||+|+..|+.+++++|++. +++++.++..|+||||+|+..++.+++++|++. |++++.+|..|.||||+|+.
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           71 ESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             cccccccccccccCcHHHHHHHHhC-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            3567999999999999999999998 999999999999999999999999999999999 99999999999999999999


Q ss_pred             cChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhccc
Q 030904          114 GGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQE  163 (169)
Q Consensus       114 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~~  163 (169)
                      .|+.+++++|+++|+++       +.+|..|.|||++|+     ++++.|+..+.
T Consensus       150 ~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          150 KGYADIVQLLLAKGART-------DLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             HTCHHHHHHHHHHTCCS-------CCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             cCCHHHHHHHHHcCCCC-------ccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence            99999999999999998       799999999999994     77777766543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=3.3e-25  Score=148.91  Aligned_cols=111  Identities=29%  Similarity=0.330  Sum_probs=105.0

Q ss_pred             CcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccC-CCCCChHHHHH
Q 030904           34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKD-EDGAIPLHDAC  112 (169)
Q Consensus        34 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~-~~~~t~l~~a~  112 (169)
                      +..|.||||+|+..|+.++++.|++  +++++.++..|+||||+|+..++.+++++|+++|++++.++ ..|.||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            3478899999999999999999998  78999999999999999999999999999999999999888 89999999999


Q ss_pred             hcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchhh
Q 030904          113 AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQND  153 (169)
Q Consensus       113 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~~  153 (169)
                      ..|+.+++++|+++|+++       +.+|..|+||||+|++
T Consensus       119 ~~~~~~~v~~Ll~~ga~~-------~~~d~~g~tpl~~A~~  152 (183)
T 3deo_A          119 GYVRPEVVEALVELGADI-------EVEDERGLTALELARE  152 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCT-------TCCCTTSCCHHHHHHH
T ss_pred             hcCcHHHHHHHHHcCCCC-------cCCCCCCCCHHHHHHH
Confidence            999999999999999998       7999999999999953

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=5e-25  Score=165.74  Aligned_cols=135  Identities=24%  Similarity=0.330  Sum_probs=70.1

Q ss_pred             HHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Q 030904           16 EDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGA   95 (169)
Q Consensus        16 ~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~   95 (169)
                      .+++.|++.|.+++..  +..|.||||+|+..|+.+++++|++. +++++..+..|.||||+|+..++.+++++|+++|+
T Consensus       226 ~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~  302 (437)
T 1n11_A          226 EVARSLLQYGGSANAE--SVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV  302 (437)
T ss_dssp             HHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCCCCC--CCCCCCHHHHHHHCCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCc
Confidence            3444444544444322  23444555555555555555555554 55555555555555555555555555555555555


Q ss_pred             CCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904           96 SLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM  160 (169)
Q Consensus        96 ~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~  160 (169)
                      +++.++..|.||||+|+..|+.+++++|+++|+++       +.++..|.||||+|+     +++++|++
T Consensus       303 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-------n~~~~~g~t~L~~A~~~g~~~iv~~Ll~  365 (437)
T 1n11_A          303 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV-------NAKTKLGYSPLHQAAQQGHTDIVTLLLK  365 (437)
T ss_dssp             CTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCC-------CCCCCCCCCHHHHHHHCChHHHHHHHHH
Confidence            55555555555555555555555555555555554       455555555555553     55555555

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=6.5e-25  Score=143.33  Aligned_cols=117  Identities=26%  Similarity=0.361  Sum_probs=109.4

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcCh
Q 030904           37 HLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGF  116 (169)
Q Consensus        37 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~  116 (169)
                      ..++|+.|+..|+.+++++|++. +.+++ .+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHc-CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            34899999999999999999998 77766 57889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          117 IEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       117 ~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      .+++++|+++|+++       +.+|..|.||||+|+     +++++|++.+
T Consensus        80 ~~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  123 (153)
T 1awc_B           80 ANIVEVLLKHGADV-------NAKDMLKMTALHWATEHNHQEVVELLIKYG  123 (153)
T ss_dssp             HHHHHHHHTTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            99999999999998       789999999999995     9999999864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.93  E-value=1.3e-24  Score=158.59  Aligned_cols=76  Identities=18%  Similarity=0.144  Sum_probs=37.8

Q ss_pred             HHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904           15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER   93 (169)
Q Consensus        15 ~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~   93 (169)
                      ..++++|++.|++++..  +..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|+++
T Consensus        71 ~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  146 (351)
T 3utm_A           71 VRIVQLLLQHGADVHAK--DKGGLVPLHNACSYGHYEVTELLLKH-GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH  146 (351)
T ss_dssp             HHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCcc--CCCCCcHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            34455555555544332  23444555555555555555555554 555555555555555555554444444444433

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.93  E-value=1.2e-25  Score=160.29  Aligned_cols=136  Identities=15%  Similarity=0.175  Sum_probs=120.1

Q ss_pred             HHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCC-CCcccCCCCCcHHHHHH-----hcCCHHHHHHHH
Q 030904           18 NALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSG-SIDEPVEDGDTALHLTC-----LYGYLPCVQLLL   91 (169)
Q Consensus        18 ~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~-~~~~~~~~g~~~L~~a~-----~~~~~~~~~~ll   91 (169)
                      ++.+.+.+.+..++..+..|.||||+|+..|+.+++++|++. |+ +++..+..|.||||+|+     ..++.+++++|+
T Consensus        92 ~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll  170 (276)
T 4hbd_A           92 FRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDS-GVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLF  170 (276)
T ss_dssp             HHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-SCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHH
Confidence            333444444433455677899999999999999999999999 65 99999999999999999     557889999999


Q ss_pred             HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904           92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus        92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      +.|...+..+..|.||||+|+..|+.+++++|+++|+++       +.+|..|+||||+|+     +++++|++.
T Consensus       171 ~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-------n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  238 (276)
T 4hbd_A          171 RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-------NVQDDDGSTALMCACEHGHKEIAGLLLAV  238 (276)
T ss_dssp             HHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHHTCHHHHHHHHTS
T ss_pred             HcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-------CCCCCCCCCHHHHHHHCCCHHHHHHHHhc
Confidence            999999999999999999999999999999999999998       899999999999995     999999983

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=6.8e-26  Score=148.56  Aligned_cols=131  Identities=20%  Similarity=0.240  Sum_probs=102.4

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCc-HHHHHHhcCCHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDT-ALHLTCLYGYLPCVQLLL   91 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~-~L~~a~~~~~~~~~~~ll   91 (169)
                      ....++++|++.|.+++..  +..|.||||+|+ .|+.+++++|++. |++++.++..|.| |||+|+..++.+++++|+
T Consensus        23 g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~-~~~~~~v~~Ll~~-g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll   98 (156)
T 1bi7_B           23 GRVEEVRALLEAGANPNAP--NSYGRRPIQVMM-MGSARVAELLLLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVLH   98 (156)
T ss_dssp             TCHHHHHHHHTTTCCTTCC--CSSSCCTTTSSC-TTCHHHHHHHHTT-TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHH-cCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHH
Confidence            3456888888889887754  557889999985 8999999999998 9999999999999 999999999999999999


Q ss_pred             HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchhhH
Q 030904           92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQNDL  154 (169)
Q Consensus        92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~~~  154 (169)
                      ++|++++.+|..|.||||+|+..|+.+++++|+++|+++       +.++..|.||.+.+.++
T Consensus        99 ~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~g~t~~~~~~~i  154 (156)
T 1bi7_B           99 RAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-------RGSNHARIDAAEGPSDI  154 (156)
T ss_dssp             HHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------------------
T ss_pred             HcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-------CccCcCcCcccccCCCC
Confidence            999999999999999999999999999999999999998       78999999998866544

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.93  E-value=3.6e-25  Score=147.06  Aligned_cols=118  Identities=24%  Similarity=0.309  Sum_probs=109.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChH
Q 030904           38 LRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFI  117 (169)
Q Consensus        38 ~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~  117 (169)
                      .+|||.|+..|+.+.++.|++.....++.++..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT   82 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence            47899999999999999999984444888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          118 EIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       118 ~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      +++++|+++|+++       +.++..|.||||+|+     +++++|++.+
T Consensus        83 ~~v~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  125 (172)
T 3v30_A           83 DIVGLLLERDVDI-------NIYDWNGGTPLLYAVRGNHVKCVEALLARG  125 (172)
T ss_dssp             HHHHHHHTTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999997       789999999999995     9999999853

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.93  E-value=1.4e-25  Score=163.43  Aligned_cols=147  Identities=14%  Similarity=0.109  Sum_probs=122.6

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC---HHHHHHH
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGY---LPCVQLL   90 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~---~~~~~~l   90 (169)
                      ...+++++.+.|++++.. .+..|.||||+|+..|+.+++++|++. |++++.++..|+||||+|+..|+   .++++.|
T Consensus       109 ~~~~~~~l~~~g~dvn~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~l  186 (327)
T 1sw6_A          109 LQEVNDAFPNTQLNLNIP-VDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL  186 (327)
T ss_dssp             HHHHHHHCTTSCCCSCSC-CSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHH
T ss_pred             HHHHHHHHHhcCCCcccc-cCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhcccccHHHHHHH
Confidence            356778888888888751 456788999999999999999999998 99999999999999999999998   6788888


Q ss_pred             HHcC-CCCCccCCCCCChHHHHHh----cChHHHHHHHHhcCC--------------------Cchhh------------
Q 030904           91 LERG-ASLEAKDEDGAIPLHDACA----GGFIEIVQLLINSAS--------------------GTECV------------  133 (169)
Q Consensus        91 l~~g-~~~~~~~~~~~t~l~~a~~----~~~~~~~~~ll~~~~--------------------~~~~~------------  133 (169)
                      ++.+ ++++.+|..|+||||+|+.    .|+.+++++|++.+.                    +++..            
T Consensus       187 l~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~  266 (327)
T 1sw6_A          187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL  266 (327)
T ss_dssp             HHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHC
T ss_pred             HHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHH
Confidence            8886 7899999999999999998    899999999988742                    22100            


Q ss_pred             ------hhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          134 ------KRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       134 ------~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                            ..-++.+|..|+||||+|+     +++++|++.|
T Consensus       267 ~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~G  306 (327)
T 1sw6_A          267 DLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG  306 (327)
T ss_dssp             SHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                  0015788999999999995     9999999853

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.92  E-value=5.7e-26  Score=158.08  Aligned_cols=125  Identities=26%  Similarity=0.310  Sum_probs=114.2

Q ss_pred             ccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCC------CCccCCC
Q 030904           30 LESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGAS------LEAKDED  103 (169)
Q Consensus        30 ~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~------~~~~~~~  103 (169)
                      +...+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|++.|++      ++..+..
T Consensus        38 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (236)
T 1ikn_D           38 LNFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN  116 (236)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTT
T ss_pred             hhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCC
Confidence            344566789999999999999999999988 999999999999999999999999999999999875      4677889


Q ss_pred             CCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccC-CCCCcccchh-----hHHHHhhhcc
Q 030904          104 GAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDA-EGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       104 ~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~-~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      |.||||+|+..|+.+++++|+++|+++       +.++. .|.||||+|+     +++++|++.|
T Consensus       117 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  174 (236)
T 1ikn_D          117 GHTCLHLASIHGYLGIVELLVSLGADV-------NAQEPCNGRTALHLAVDLQNPDLVSLLLKCG  174 (236)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHTCCT-------TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC-------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999999999999998       78887 9999999995     9999999953

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.92  E-value=1.2e-24  Score=163.76  Aligned_cols=139  Identities=27%  Similarity=0.381  Sum_probs=127.0

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL   91 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll   91 (169)
                      .....++++|++.|.+++..  +..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|+
T Consensus       255 ~g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  331 (437)
T 1n11_A          255 EGHAEMVALLLSKQANGNLG--NKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLL  331 (437)
T ss_dssp             TTCHHHHHHHHTTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHH
T ss_pred             CCCHHHHHHHHhcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhC-CccCCCCCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            34567889999999988754  55778999999999999999999999 9999999999999999999999999999999


Q ss_pred             HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904           92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM  160 (169)
Q Consensus        92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~  160 (169)
                      ++|++++.++..|.||||+|+..|+.+++++|+++|+++       +.+|..|.||+++|.     +++++|..
T Consensus       332 ~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~-------~~~~~~g~t~l~~A~~~g~~~~~~~l~~  398 (437)
T 1n11_A          332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-------NEVSSDGTTPLAIAKRLGYISVTDVLKV  398 (437)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-------CCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCC-------CCCCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            999999999999999999999999999999999999998       799999999999995     66666644

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.92  E-value=3.1e-25  Score=158.68  Aligned_cols=144  Identities=15%  Similarity=0.092  Sum_probs=92.6

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      ...+++++|++.|++++..    .|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|++
T Consensus        42 g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~  116 (285)
T 3kea_A           42 NNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFS-GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK  116 (285)
T ss_dssp             TCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            3445666666666665543    256667777777777777777666 66666666667777777777777777777776


Q ss_pred             cCCCCCccCCCC-CChHHHHHhcChHHHHHHHHhcCCCch-------------------hhhhh------hhcccCCCCC
Q 030904           93 RGASLEAKDEDG-AIPLHDACAGGFIEIVQLLINSASGTE-------------------CVKRM------LETVDAEGDT  146 (169)
Q Consensus        93 ~g~~~~~~~~~~-~t~l~~a~~~~~~~~~~~ll~~~~~~~-------------------~~~~~------~~~~~~~g~t  146 (169)
                      .|++++.++..| .||||+|+..|+.+++++|+++|.+..                   .++.+      ++.++..|.|
T Consensus       117 ~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t  196 (285)
T 3kea_A          117 KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFI  196 (285)
T ss_dssp             HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCC
T ss_pred             cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCC
Confidence            676666666666 566666666666666666666655441                   00111      1567777878


Q ss_pred             c-ccchh-----hHHHHhhhc
Q 030904          147 D-CDDQN-----DLVSLFIMQ  161 (169)
Q Consensus       147 p-l~~A~-----~~~~~li~~  161 (169)
                      | ||+|+     +++++|++.
T Consensus       197 ~~L~~A~~~~~~~~v~~Ll~~  217 (285)
T 3kea_A          197 PDIKLAIDNKDIEMLQALFKY  217 (285)
T ss_dssp             TTHHHHHHHTCHHHHHHHTTS
T ss_pred             hHHHHHHHcCCHHHHHHHHHc
Confidence            6 88774     777777774

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.92  E-value=3.2e-24  Score=156.43  Aligned_cols=146  Identities=22%  Similarity=0.295  Sum_probs=119.5

Q ss_pred             ChHHHHHHHHhcCCCCcccCC--------CcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC-
Q 030904           13 DSEEDNALFEEDGVNMDLESE--------TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGY-   83 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~--------~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~-   83 (169)
                      ....+++++++.|++++....        ...|.||||+|+..|+.+++++|+++.|++++.++..|.++++.++..+. 
T Consensus       136 ~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~  215 (337)
T 4g8k_A          136 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD  215 (337)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT
T ss_pred             CcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc
Confidence            356688888899988875332        34578999999999999999999987689999999999999987765443 


Q ss_pred             ---HHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhc-CCCchhhhhhhhcccCCCCCcccchh-----hH
Q 030904           84 ---LPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINS-ASGTECVKRMLETVDAEGDTDCDDQN-----DL  154 (169)
Q Consensus        84 ---~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~  154 (169)
                         ..++++|+++|++++.++..|.||||+|+..|+.++++.|++. |+++       +.+|.+|+||||+|+     ++
T Consensus       216 ~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~v-------n~~d~~G~TpL~~A~~~g~~~i  288 (337)
T 4g8k_A          216 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-------NDTDSDGKTALLLAVELKLKKI  288 (337)
T ss_dssp             TTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCT-------TCBCTTSCBHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcc-------cCcCCCCCCHHHHHHHcCCHHH
Confidence               3577889999999999999999999999999999999988875 6776       788999999999985     88


Q ss_pred             HHHhhhcc-ccc
Q 030904          155 VSLFIMQQ-EVN  165 (169)
Q Consensus       155 ~~~li~~~-~~~  165 (169)
                      +++||+.| ++|
T Consensus       289 v~~Ll~~GAd~n  300 (337)
T 4g8k_A          289 AELLCKRGASTD  300 (337)
T ss_dssp             HHHHHTTSCSST
T ss_pred             HHHHHHCCCCCC
Confidence            88888854 443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=1.2e-24  Score=152.54  Aligned_cols=109  Identities=29%  Similarity=0.327  Sum_probs=103.6

Q ss_pred             cchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccC-CCCCChHHHHHh
Q 030904           35 PPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKD-EDGAIPLHDACA  113 (169)
Q Consensus        35 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~-~~~~t~l~~a~~  113 (169)
                      ..|.||||+|+..|+.++++.|++  +++++.++..|+||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+.
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            468899999999999999999997  78999999999999999999999999999999999999988 889999999999


Q ss_pred             cChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh
Q 030904          114 GGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN  152 (169)
Q Consensus       114 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~  152 (169)
                      .|+.+++++|+++|+++       +.+|..|.||||+|+
T Consensus       121 ~g~~~~v~~Ll~~ga~~-------~~~d~~g~t~l~~A~  152 (244)
T 3ui2_A          121 YVRPEVVEALVELGADI-------EVEDERGLTALELAR  152 (244)
T ss_dssp             TTCHHHHHHHHHTTCCT-------TCCCTTCCCHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCC-------CCCCCCCCcHHHHHH
Confidence            99999999999999998       789999999999984

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.92  E-value=3e-24  Score=129.02  Aligned_cols=92  Identities=36%  Similarity=0.568  Sum_probs=87.9

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcCh
Q 030904           37 HLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGF  116 (169)
Q Consensus        37 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~  116 (169)
                      |.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            57999999999999999999998 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCC
Q 030904          117 IEIVQLLINSASG  129 (169)
Q Consensus       117 ~~~~~~ll~~~~~  129 (169)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999864

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.92  E-value=5e-24  Score=163.04  Aligned_cols=143  Identities=24%  Similarity=0.292  Sum_probs=119.0

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCccc------CCCCCcHHHHHHh---cC
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEP------VEDGDTALHLTCL---YG   82 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~------~~~g~~~L~~a~~---~~   82 (169)
                      ++.+...+++..+-....+........+.||.|+..|+.+.++.|++. |++++.+      +..|.||||+|+.   .|
T Consensus       107 s~~~~re~fIraky~~~~f~~~~~~~~~~L~~A~~~g~~~~v~~ll~~-g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g  185 (497)
T 3lvq_E          107 SDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQA  185 (497)
T ss_dssp             CCHHHHHHHHHHHHTTCTTSCCCC-CHHHHHHHHHHTCHHHHHHHHHT-TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTT
T ss_pred             CcHHHHHHHHHHHhhcccccccccccHHHHHHHHhccCHHHHHHHHhh-cccccCCCCCcccccccchHHHHHHHhcccc
Confidence            344445555554444433333333444779999999999999999998 8998877      7889999999965   88


Q ss_pred             CHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHH
Q 030904           83 YLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSL  157 (169)
Q Consensus        83 ~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~  157 (169)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++       +.+|..|.||||+|+     +++++
T Consensus       186 ~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~-------~~~d~~g~tpl~~A~~~~~~~~~~~  258 (497)
T 3lvq_E          186 SLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV-------GTVNEAGETALDIARKKHHKECEEL  258 (497)
T ss_dssp             THHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCC-------SCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999999999999999999998       799999999999995     89999


Q ss_pred             hhhcc
Q 030904          158 FIMQQ  162 (169)
Q Consensus       158 li~~~  162 (169)
                      |++.|
T Consensus       259 Ll~~g  263 (497)
T 3lvq_E          259 LEQAQ  263 (497)
T ss_dssp             HHHTC
T ss_pred             HHHhC
Confidence            99854

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=5.7e-24  Score=153.31  Aligned_cols=144  Identities=24%  Similarity=0.283  Sum_probs=119.9

Q ss_pred             CCChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcc------cCCCCCcHHHHHHhc---
Q 030904           11 EDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDE------PVEDGDTALHLTCLY---   81 (169)
Q Consensus        11 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~------~~~~g~~~L~~a~~~---   81 (169)
                      +++.+...+++...-....+........++|+.|+..|+.+.++.|+.. +++++.      .+..|.||||+|+..   
T Consensus       125 ~s~~~~r~~~I~~Ky~~~~f~~~~~~~~~~L~~A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~  203 (301)
T 2b0o_E          125 ESDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQ  203 (301)
T ss_dssp             TCCHHHHHHHHHHHHTSCTTSCCCC-CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCT
T ss_pred             cccHHHHHHHHHHHHHhhhhhcccCchHHHHhhhhhccCHHHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhccc
Confidence            3444555555554433323333344456789999999999999999987 888887      588999999999987   


Q ss_pred             CCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHH
Q 030904           82 GYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVS  156 (169)
Q Consensus        82 ~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~  156 (169)
                      ++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|+++       +.+|..|.||||+|+     ++++
T Consensus       204 ~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-------~~~d~~G~TpL~~A~~~~~~~iv~  276 (301)
T 2b0o_E          204 ASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV-------GTVNEAGETALDIARKKHHKECEE  276 (301)
T ss_dssp             TTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCC-------SCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHcCCHHHHH
Confidence            8899999999999999999999999999999999999999999999998       799999999999995     8999


Q ss_pred             Hhhhcc
Q 030904          157 LFIMQQ  162 (169)
Q Consensus       157 ~li~~~  162 (169)
                      +|++.+
T Consensus       277 ~Ll~~g  282 (301)
T 2b0o_E          277 LLEQAQ  282 (301)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            999854

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.92  E-value=1.7e-24  Score=153.66  Aligned_cols=134  Identities=21%  Similarity=0.284  Sum_probs=113.2

Q ss_pred             HHHhcCCCCccc--CCCcchhHHHHHHHHc---CCHHHHHHHHHhCCCC-----------CcccCCCCCcHHHHHHhcCC
Q 030904           20 LFEEDGVNMDLE--SETPPHLRDLAAAAQL---GDVHSLRLALDNLSGS-----------IDEPVEDGDTALHLTCLYGY   83 (169)
Q Consensus        20 ~l~~~g~~~~~~--~~~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~-----------~~~~~~~g~~~L~~a~~~~~   83 (169)
                      ...+.+.+++..  ..+..|.||||+|+..   |+.+++++|++. +++           ...++..|.||||+|+..++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~-ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~  113 (273)
T 2pnn_A           35 FLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV-ARKTDSLKQFVNASYTDSYYKGQTALHIAIERRN  113 (273)
T ss_dssp             HHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH-HHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTC
T ss_pred             HHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh-hccccchhHHhhcccccccCCCCCHHHHHHHcCC
Confidence            333455555321  2366889999999986   999999999997 543           22256789999999999999


Q ss_pred             HHHHHHHHHcCCCCCccCC--------------CCCChHHHHHhcChHHHHHHHHh---cCCCchhhhhhhhcccCCCCC
Q 030904           84 LPCVQLLLERGASLEAKDE--------------DGAIPLHDACAGGFIEIVQLLIN---SASGTECVKRMLETVDAEGDT  146 (169)
Q Consensus        84 ~~~~~~ll~~g~~~~~~~~--------------~~~t~l~~a~~~~~~~~~~~ll~---~~~~~~~~~~~~~~~~~~g~t  146 (169)
                      .+++++|++.|++++.++.              .|.||||+|+..|+.+++++|++   .|+++       +.+|..|+|
T Consensus       114 ~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-------~~~d~~g~t  186 (273)
T 2pnn_A          114 MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-------SARDSVGNT  186 (273)
T ss_dssp             HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-------TCCCTTSCC
T ss_pred             HHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-------eeeCCCCCc
Confidence            9999999999999999887              79999999999999999999999   89998       799999999


Q ss_pred             cccchh--------------hHHHHhhhc
Q 030904          147 DCDDQN--------------DLVSLFIMQ  161 (169)
Q Consensus       147 pl~~A~--------------~~~~~li~~  161 (169)
                      |||+|+              +++++|++.
T Consensus       187 pLh~A~~~~~~~~~~~~~~~~~v~~Ll~~  215 (273)
T 2pnn_A          187 VLHALVEVADNTVDNTKFVTSMYNEILIL  215 (273)
T ss_dssp             HHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCcchhHHHHHHHHHHHHHHh
Confidence            999985              577888884

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.92  E-value=6.7e-24  Score=154.78  Aligned_cols=121  Identities=21%  Similarity=0.270  Sum_probs=109.4

Q ss_pred             cchhHHHHHHHHc---CCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHH
Q 030904           35 PPHLRDLAAAAQL---GDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDA  111 (169)
Q Consensus        35 ~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a  111 (169)
                      ..+.||||+|+..   +..+++++|++. +++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|
T Consensus       209 ~~~~t~L~~A~~~~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A  287 (351)
T 3utm_A          209 QSHETALHCAVASLHPKRKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRA  287 (351)
T ss_dssp             TTCCCHHHHHHHCCSTTHHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHHhCccHHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            4567999999999   558999999988 999999999999999999999999999999999999999999999999999


Q ss_pred             HhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-hHHHHhhhccc
Q 030904          112 CAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-DLVSLFIMQQE  163 (169)
Q Consensus       112 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-~~~~~li~~~~  163 (169)
                      +..|+.+++++|+++|+++       +.+|..|.||+++|. +++++|.+...
T Consensus       288 ~~~~~~~~v~~Ll~~gad~-------~~~~~~g~tal~~a~~~~~~~l~~~~~  333 (351)
T 3utm_A          288 ALAGHLQTCRLLLSYGSDP-------SIISLQGFTAAQMGNEAVQQILSESTP  333 (351)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHSCHHHHHHHHHC--
T ss_pred             HHcCcHHHHHHHHHcCCCC-------CCcCCCCCChhhhhhHHHHHHHHhccc
Confidence            9999999999999999998       799999999999996 55555555443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.91  E-value=2.7e-25  Score=154.42  Aligned_cols=137  Identities=15%  Similarity=0.133  Sum_probs=118.4

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      ....+++.+++.|++++.  .+..|.||||+|+..|+.+++++|++. |++++.++..|+||||+|+..++.+++++|++
T Consensus        32 g~~~~v~~Ll~~g~~~~~--~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~  108 (229)
T 2vge_A           32 GELEVVQQAVKEMNDPSQ--PNEEGITALHNAICGANYSIVDFLITA-GANVNSPDSHGWTPLHCAASCNDTVICMALVQ  108 (229)
T ss_dssp             TCHHHHHHHHHHSSCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCHHHHHHHHhcCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            345678888899998875  456788999999999999999999998 99999999999999999999999999999999


Q ss_pred             cCCCCCccC-CCCCChHHHH--HhcChHHHHHHHHhcCCCchhhhh-------------------------hhhcccCCC
Q 030904           93 RGASLEAKD-EDGAIPLHDA--CAGGFIEIVQLLINSASGTECVKR-------------------------MLETVDAEG  144 (169)
Q Consensus        93 ~g~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~ll~~~~~~~~~~~-------------------------~~~~~~~~g  144 (169)
                      .|++++..+ ..|.||||+|  +..|+.+++++|++.|++++....                         -++.+|.+|
T Consensus       109 ~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G  188 (229)
T 2vge_A          109 HGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPE  188 (229)
T ss_dssp             TTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTT
T ss_pred             cCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCccccccccccccCCCc
Confidence            999999986 6999999999  999999999999998876631110                         034567888


Q ss_pred             CCcccchh
Q 030904          145 DTDCDDQN  152 (169)
Q Consensus       145 ~tpl~~A~  152 (169)
                      +||||+|+
T Consensus       189 ~TpL~~A~  196 (229)
T 2vge_A          189 ETDWWWAA  196 (229)
T ss_dssp             CSSEEEEE
T ss_pred             ccHHHHHH
Confidence            99999885

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.91  E-value=7.5e-24  Score=146.99  Aligned_cols=138  Identities=17%  Similarity=0.187  Sum_probs=89.4

Q ss_pred             HHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC-HHHHHHHHHc
Q 030904           15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGY-LPCVQLLLER   93 (169)
Q Consensus        15 ~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~-~~~~~~ll~~   93 (169)
                      ..+++++++.|.+++..  +..+.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..+. .+++++|++.
T Consensus        89 ~~~v~~Ll~~g~~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~  165 (240)
T 3eu9_A           89 LSMVVQLMKYGADPSLI--DGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF  165 (240)
T ss_dssp             HHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHT
T ss_pred             HHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCChHHHHHHHHhc
Confidence            34555555655555432  33455666666666666666666665 66666666666666666664443 5566666666


Q ss_pred             CCCCCccCC-CCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904           94 GASLEAKDE-DGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus        94 g~~~~~~~~-~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      |++++..+. .|.||||+|+..|+.+++++|+++|+++       +.++..|.||+++|+     +++++|++.+
T Consensus       166 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~  233 (240)
T 3eu9_A          166 NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV-------DAQNIKGESALDLAKQRKNVWMINHLQEAR  233 (240)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-------TCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred             CCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence            666666654 6677777777777777777777777776       677777777777774     7777777744

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.91  E-value=1.2e-23  Score=150.11  Aligned_cols=122  Identities=24%  Similarity=0.339  Sum_probs=111.3

Q ss_pred             CcchhHHHHHHHHcCCHHHHHHHHHhCCCCCc------ccCCCCCcHHHHHHhc---CCHHHHHHHHHcCCCCCccCCCC
Q 030904           34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSID------EPVEDGDTALHLTCLY---GYLPCVQLLLERGASLEAKDEDG  104 (169)
Q Consensus        34 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~------~~~~~g~~~L~~a~~~---~~~~~~~~ll~~g~~~~~~~~~~  104 (169)
                      .....++|+.|+..|+.+.++.++.. |.+++      ..+..|.||||+|+..   ++.+++++|++.|++++.+|..|
T Consensus       127 ~~~~l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g  205 (278)
T 1dcq_A          127 TAAKLHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG  205 (278)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTC
T ss_pred             cchhhhhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCC
Confidence            34567899999999999999999988 77744      4478899999999999   89999999999999999999999


Q ss_pred             CChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhccc
Q 030904          105 AIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQE  163 (169)
Q Consensus       105 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~~  163 (169)
                      .||||+|+..|+.+++++|+++|+++       +.+|..|.||||+|+     +++++|++.+.
T Consensus       206 ~TpLh~A~~~g~~~~v~~Ll~~gad~-------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          206 STALHYCCLTDNAECLKLLLRGKASI-------EIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-------CCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999999999999999998       899999999999995     99999999654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.91  E-value=4.6e-24  Score=157.91  Aligned_cols=138  Identities=23%  Similarity=0.295  Sum_probs=69.6

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCC---CCCcccCCCCCcHHHHHHhcC---CHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLS---GSIDEPVEDGDTALHLTCLYG---YLPC   86 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~---~~~~~~~~~g~~~L~~a~~~~---~~~~   86 (169)
                      ....++++|++.|++++..  +..|.||||+|+..|+.+++++|++. +   ++++..+..|.||||+|+..+   +.++
T Consensus       177 g~~~iv~~Ll~~ga~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~  253 (373)
T 2fo1_E          177 RRRRLVAYLMKAGADPTIY--NKSERSALHQAAANRDFGMMVYMLNS-TKLKGDIEELDRNGMTALMIVAHNEGRDQVAS  253 (373)
T ss_dssp             TCHHHHHHHHHTTCCSCCC--CTTCCCHHHHHHHTTCHHHHHHHTTS-HHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHH
T ss_pred             ChHHHHHHHHHCCCCCccc--CCCCCCHHHHHHHCCCHHHHHHHHhc-CccccChhhcCCCCCCHHHHHHHhCCcchHHH
Confidence            3445666666666665533  33444555555555555555555544 2   344444555555555555444   4445


Q ss_pred             HHHHHHcCCCCCc--------cCCCCCChHHHHHhcChHHHHHHHHhcC-CCchhhhhhhhcccCCCCCcccchh-----
Q 030904           87 VQLLLERGASLEA--------KDEDGAIPLHDACAGGFIEIVQLLINSA-SGTECVKRMLETVDAEGDTDCDDQN-----  152 (169)
Q Consensus        87 ~~~ll~~g~~~~~--------~~~~~~t~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~~~~g~tpl~~A~-----  152 (169)
                      +++|++.|++++.        .+..|.||||+|+..|+.+++++|++.+ +++       +.+|..|.||||+|+     
T Consensus       254 v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-------n~~d~~g~TpL~~A~~~g~~  326 (373)
T 2fo1_E          254 AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK-------DKQDEDGKTPIMLAAQEGRI  326 (373)
T ss_dssp             HHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT-------TCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCc-------cCcCCCCCCHHHHHHHcCCH
Confidence            5555555544443        3334455555555555555555555443 343       444445555555542     


Q ss_pred             hHHHHhhh
Q 030904          153 DLVSLFIM  160 (169)
Q Consensus       153 ~~~~~li~  160 (169)
                      +++++|++
T Consensus       327 ~iv~~Ll~  334 (373)
T 2fo1_E          327 EVVMYLIQ  334 (373)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444444

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.91  E-value=9.7e-24  Score=156.16  Aligned_cols=143  Identities=11%  Similarity=0.091  Sum_probs=123.5

Q ss_pred             HHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcC---
Q 030904           18 NALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG---   94 (169)
Q Consensus        18 ~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g---   94 (169)
                      .+.+++.|++++..  +..|.||||+|+..|+.+++++|++. |++++.++..|.||||+|+..++.+++++|++.+   
T Consensus       149 ~~~ll~~ga~vn~~--d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~  225 (373)
T 2fo1_E          149 AKECIAAGADVNAM--DCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLK  225 (373)
T ss_dssp             HHHHHHTCCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH
T ss_pred             HHHHHhcCCCCcCC--CCCCCCHHHHHHHcChHHHHHHHHHC-CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccc
Confidence            44556888888754  55788999999999999999999998 9999999999999999999999999999999987   


Q ss_pred             CCCCccCCCCCChHHHHHhcC---hHHHHHHHHhcCCCchhhh-hhhhcccCCCCCcccchh-----hHHHHhhhccc
Q 030904           95 ASLEAKDEDGAIPLHDACAGG---FIEIVQLLINSASGTECVK-RMLETVDAEGDTDCDDQN-----DLVSLFIMQQE  163 (169)
Q Consensus        95 ~~~~~~~~~~~t~l~~a~~~~---~~~~~~~ll~~~~~~~~~~-~~~~~~~~~g~tpl~~A~-----~~~~~li~~~~  163 (169)
                      ++++..+..|.||||+|+..+   +.+++++|++.|++++... ...+.++..|.||||+|+     +++++|++.++
T Consensus       226 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~  303 (373)
T 2fo1_E          226 GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG  303 (373)
T ss_dssp             HTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSC
T ss_pred             cChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcC
Confidence            799999999999999999988   8999999999999873100 001236779999999995     99999998653

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.91  E-value=1.3e-24  Score=158.36  Aligned_cols=133  Identities=20%  Similarity=0.096  Sum_probs=117.4

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCC---HHHHHHHHHhCCCCCcccCCCCCcHHHHHHh----cCCH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGD---VHSLRLALDNLSGSIDEPVEDGDTALHLTCL----YGYL   84 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~---~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~----~~~~   84 (169)
                      ....+++++|++.|++++..  +..|.||||+|+..|+   .+.++.|++...++++.++..|+||||+|+.    .++.
T Consensus       141 ~g~~~~v~~Ll~~Gad~n~~--d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~  218 (327)
T 1sw6_A          141 IANLELVKHLVKHGSNRLYG--DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCS  218 (327)
T ss_dssp             TTCHHHHHHHHHTTCCTTBC--CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCH
T ss_pred             cCCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccH
Confidence            34567899999999998754  5578899999999998   6778888887447789999999999999998    8999


Q ss_pred             HHHHHHHHcCC---------------------------------------------CCCccCCCCCChHHHHHhcChHHH
Q 030904           85 PCVQLLLERGA---------------------------------------------SLEAKDEDGAIPLHDACAGGFIEI  119 (169)
Q Consensus        85 ~~~~~ll~~g~---------------------------------------------~~~~~~~~~~t~l~~a~~~~~~~~  119 (169)
                      +++++|++.+.                                             +++.+|..|+||||+|+..|+.++
T Consensus       219 ~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~  298 (327)
T 1sw6_A          219 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI  298 (327)
T ss_dssp             HHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            99999987743                                             578889999999999999999999


Q ss_pred             HHHHHhcCCCchhhhhhhhcccCCCCCcccchhh
Q 030904          120 VQLLINSASGTECVKRMLETVDAEGDTDCDDQND  153 (169)
Q Consensus       120 ~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~~  153 (169)
                      +++|+++|+++       +.+|..|+||||+|++
T Consensus       299 v~~Ll~~Gad~-------~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          299 VDALLDYGADP-------FIANKSGLRPVDFGAG  325 (327)
T ss_dssp             HHHHHHTTCCT-------TCCCTTSCCGGGGTCC
T ss_pred             HHHHHHcCCCC-------cccCCCCCCHHHHHHh
Confidence            99999999998       8999999999999964

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=2.2e-23  Score=133.59  Aligned_cols=112  Identities=21%  Similarity=0.345  Sum_probs=102.9

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      ....+++++++.|.+++..  +..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus        25 g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~  101 (136)
T 2jab_A           25 GQDDEVRILMANGADVNAK--DEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK  101 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            4556788888989887654  56788999999999999999999998 99999999999999999999999999999999


Q ss_pred             cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcC
Q 030904           93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSA  127 (169)
Q Consensus        93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~  127 (169)
                      +|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       102 ~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          102 HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999876

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.91  E-value=3.9e-24  Score=133.25  Aligned_cols=108  Identities=28%  Similarity=0.382  Sum_probs=100.1

Q ss_pred             CCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHH
Q 030904           33 ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC  112 (169)
Q Consensus        33 ~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~  112 (169)
                      .+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            356788999999999999999999998 9999999999999999999999999999999999999999999999999999


Q ss_pred             hcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcc
Q 030904          113 AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDC  148 (169)
Q Consensus       113 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl  148 (169)
                      ..++.+++++|+++|+++       +.++..|.+|-
T Consensus        84 ~~~~~~~~~~Ll~~ga~~-------n~~~~~~~~~~  112 (115)
T 2l6b_A           84 KNGHHEIVKLLDAKGADV-------NARSWGSSHHH  112 (115)
T ss_dssp             TTTCHHHHHHHHTTSSSH-------HHHSCCCC---
T ss_pred             HCCCHHHHHHHHHcCCCC-------CcCCccccccc
Confidence            999999999999999998       78888898874

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=4.2e-24  Score=136.92  Aligned_cols=114  Identities=18%  Similarity=0.182  Sum_probs=105.1

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCC-CCcHHHHHHhcCCHHHHHHH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVED-GDTALHLTCLYGYLPCVQLL   90 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~-g~~~L~~a~~~~~~~~~~~l   90 (169)
                      ....++++++++.|.+++..  +..+.||||+|+. |+.+++++|++. +++++.++.. |.||||+|+..++.+++++|
T Consensus        22 ~~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   97 (136)
T 1d9s_A           22 RGQVETVRQLLEAGADPNAL--NRFGRRPIQVMMM-GSAQVAELLLLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVL   97 (136)
T ss_dssp             TTCHHHHHHHHHTTCCTTCC--CTTCCTTTTTSTT-SCHHHHHHHHHH-TCCSSCCBTTTTBCHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCcCCc--CCCCCCHHHHHHc-CCHHHHHHHHHC-CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            34567888899989887754  5678899999999 999999999998 9999999999 99999999999999999999


Q ss_pred             HHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCC
Q 030904           91 LERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG  129 (169)
Q Consensus        91 l~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~  129 (169)
                      ++.|++++.+|..|.||||+|+..++.+++++|+++|++
T Consensus        98 l~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           98 HRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999874

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.91  E-value=3.8e-23  Score=143.41  Aligned_cols=116  Identities=22%  Similarity=0.199  Sum_probs=87.9

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCccc-CCCCCcHHHHHHhcCCHHHHHHH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEP-VEDGDTALHLTCLYGYLPCVQLL   90 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~-~~~g~~~L~~a~~~~~~~~~~~l   90 (169)
                      .+..++++.+++.|.+++..  +..|.||||+|+..|+.+++++|++. +.+++.. +..|.||||+|+..++.+++++|
T Consensus        19 ~g~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~L   95 (240)
T 3eu9_A           19 YGIYERCRELVEAGYDVRQP--DKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLHWATRQGHLSMVVQL   95 (240)
T ss_dssp             TTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTBCHHHHHHHHTCHHHHHHH
T ss_pred             cCChHHHHHHHHcCCCcCCC--CCCCCCHHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCCChhHHHHHcCCHHHHHHH
Confidence            34456677777777776543  45677888888888888888888877 6655544 34478888888888888888888


Q ss_pred             HHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCc
Q 030904           91 LERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT  130 (169)
Q Consensus        91 l~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~  130 (169)
                      ++.|++++..+..|.||||+|+..|+.+++++|++.|+++
T Consensus        96 l~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~  135 (240)
T 3eu9_A           96 MKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV  135 (240)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc
Confidence            8888888888888888888888888888888888887776

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=1.6e-23  Score=150.95  Aligned_cols=125  Identities=22%  Similarity=0.266  Sum_probs=108.1

Q ss_pred             HHHHHHHHhcCCCCccc----CCCcchhHHHHHHHHc---CCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHH
Q 030904           15 EEDNALFEEDGVNMDLE----SETPPHLRDLAAAAQL---GDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV   87 (169)
Q Consensus        15 ~~~~~~l~~~g~~~~~~----~~~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~   87 (169)
                      ...+..+++.|.+++..    ..+..|.||||+|+..   |+.+++++|++. |++++.+|..|+||||+|+..++.+++
T Consensus       164 ~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v  242 (301)
T 2b0o_E          164 LLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAADGNTALHYAALYNQPDCL  242 (301)
T ss_dssp             HHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            33455667888887652    1466789999999997   899999999999 999999999999999999999999999


Q ss_pred             HHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchhh
Q 030904           88 QLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQND  153 (169)
Q Consensus        88 ~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~~  153 (169)
                      ++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++             .|.||||+|++
T Consensus       243 ~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------------~g~tpLh~A~~  295 (301)
T 2b0o_E          243 KLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------------TFAFPLHVDYS  295 (301)
T ss_dssp             HHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------------TTSSCCC----
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------------CCCChhHHHHh
Confidence            999999999999999999999999999999999999998754             47999999974

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=2.9e-23  Score=153.15  Aligned_cols=118  Identities=22%  Similarity=0.258  Sum_probs=109.4

Q ss_pred             hhHHHHHHHHc-CCHHHHHHHHHhCCCCCcccC--CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHh
Q 030904           37 HLRDLAAAAQL-GDVHSLRLALDNLSGSIDEPV--EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACA  113 (169)
Q Consensus        37 ~~t~l~~a~~~-g~~~~~~~ll~~~~~~~~~~~--~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~  113 (169)
                      +.|+||.|+.. |+.++++.|++. |++++..+  ..|.||||+|+..++.+++++|+++|++++..|..|.||||+|+.
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAH-GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHc-CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            35799999999 999999999988 99999888  889999999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          114 GGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       114 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      .|+.+++++|+++|+++       +.+|..|.||||+|+     +++++|+..+
T Consensus       278 ~g~~~~v~~LL~~Gad~-------~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          278 LGHTGLACLFLKRGADL-------GARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             HTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHCcCCC-------CCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999998       799999999999995     8899988754

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.90  E-value=3.6e-24  Score=149.53  Aligned_cols=118  Identities=15%  Similarity=0.149  Sum_probs=81.5

Q ss_pred             chhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcC
Q 030904           36 PHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGG  115 (169)
Q Consensus        36 ~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~  115 (169)
                      .|.||||.|+..++.+.++.|++. |++++.. ..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAH-GMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             cccccCchhhhhhhHHHHHHHhcc-CCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            478999999999999999999998 8888754 67899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          116 FIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       116 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      +.+++++|+++|+++       +.+|..|+||||+|+     +++++|++.+
T Consensus        82 ~~~~v~~Ll~~ga~~-------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  126 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNV-------NAADSDGWTPLHCAASCNNVQVCKFLVESG  126 (239)
T ss_dssp             CHHHHHHHHHHTCCT-------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcCCCC-------CccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999998       799999999999995     9999999954

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.90  E-value=1.3e-22  Score=147.88  Aligned_cols=148  Identities=17%  Similarity=0.249  Sum_probs=119.7

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      +..+++++|++.|++++... +..|+||||+|+..|+.+++++|++. |++++.++..+.++++.++..+...++..++.
T Consensus        36 g~~~~V~~LL~~Gadvn~~~-~~~g~TpLh~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (337)
T 4g8k_A           36 EDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRH-GADPVLRKKNGATPFILAAIAGSVKLLKLFLS  113 (337)
T ss_dssp             TCHHHHHHHHHHTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCCCccC-CCCCcCHHHHHHHcCCHHHHHHHHHc-CCchhhhccCCCchhHHHHhcccchhhHHhhh
Confidence            44567888888888887532 23477889999988898888888887 88888888888888888888888888888888


Q ss_pred             cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhh---hhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904           93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVK---RMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus        93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~---~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      .+++++..|..|.||+|+|+..|+.+++++++++|++++...   ......+..|.||||+|+     +++++||.+.
T Consensus       114 ~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~  191 (337)
T 4g8k_A          114 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM  191 (337)
T ss_dssp             TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHS
T ss_pred             ccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhcc
Confidence            888999999999999999999999999999999998873111   112345677999999995     8999999754

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=1.6e-22  Score=127.25  Aligned_cols=114  Identities=32%  Similarity=0.496  Sum_probs=104.8

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      ...++++.+++.|.+++..  +..+.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus        13 ~~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~   89 (126)
T 1n0r_A           13 GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE   89 (126)
T ss_dssp             TCHHHHHHHHHHTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcChHHHHHHHHH
Confidence            3456788888888887654  55788999999999999999999998 99999999999999999999999999999999


Q ss_pred             cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCC
Q 030904           93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG  129 (169)
Q Consensus        93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~  129 (169)
                      +|++++.++..|.||||+|+..++.+++++|+++|++
T Consensus        90 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           90 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             cCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=6.4e-23  Score=138.23  Aligned_cols=114  Identities=14%  Similarity=0.187  Sum_probs=101.6

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCH----HHHHHHHHcCCCCCccCCCCCChHHHH
Q 030904           37 HLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV-EDGDTALHLTCLYGYL----PCVQLLLERGASLEAKDEDGAIPLHDA  111 (169)
Q Consensus        37 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~~g~~~L~~a~~~~~~----~~~~~ll~~g~~~~~~~~~~~t~l~~a  111 (169)
                      ++++|+.|+..|+.+.++.++.. +.  +.++ ..|+||||+|+..++.    +++++|++.|++++.+|..|+||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~-~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEK-GY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHH-SS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhc-Cc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            45789999999999999999987 53  4444 6799999999999875    489999999999999999999999999


Q ss_pred             HhcCh------HHHHHHHHhcCCCchhhhhhhhcccCCCC-Ccccchhh----------HHHHhhh
Q 030904          112 CAGGF------IEIVQLLINSASGTECVKRMLETVDAEGD-TDCDDQND----------LVSLFIM  160 (169)
Q Consensus       112 ~~~~~------~~~~~~ll~~~~~~~~~~~~~~~~~~~g~-tpl~~A~~----------~~~~li~  160 (169)
                      +..++      .+++++|+++|+++       +.+|..|+ ||||+|+.          ++++|++
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gadi-------n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~  141 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGADI-------TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS  141 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCS-------SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHT
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCCC-------CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHH
Confidence            99886      67899999999998       89999999 99999964          8899998

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=4e-22  Score=142.16  Aligned_cols=114  Identities=31%  Similarity=0.419  Sum_probs=102.9

Q ss_pred             HHHHHHHhcCCCCc----ccCCCcchhHHHHHHHHc---CCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHH
Q 030904           16 EDNALFEEDGVNMD----LESETPPHLRDLAAAAQL---GDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ   88 (169)
Q Consensus        16 ~~~~~l~~~g~~~~----~~~~~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~   88 (169)
                      ..+..++..|.+++    +...+..|.||||+|+..   |+.+++++|++. |++++.+|..|.||||+|+..|+.++++
T Consensus       144 ~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~in~~d~~g~TpLh~A~~~g~~~~v~  222 (278)
T 1dcq_A          144 FGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCLTDNAECLK  222 (278)
T ss_dssp             HHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence            34455677788765    344567799999999999   899999999999 9999999999999999999999999999


Q ss_pred             HHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCc
Q 030904           89 LLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT  130 (169)
Q Consensus        89 ~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~  130 (169)
                      +|+++|++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       223 ~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          223 LLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999999999999999998764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=4.3e-22  Score=146.91  Aligned_cols=135  Identities=22%  Similarity=0.213  Sum_probs=107.3

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      ....+++.+++.|++++.......+.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..++.+++++|++
T Consensus       211 g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~  289 (368)
T 3jue_A          211 PSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPLHHATILGHTGLACLFLK  289 (368)
T ss_dssp             CCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            56678888889999998766557889999999999999999999998 99999999999999999999999999999999


Q ss_pred             cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh
Q 030904           93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN  152 (169)
Q Consensus        93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~  152 (169)
                      +|++++.+|..|.||||+|+..++.+++++|+..+.....    ....+..+.|+++.+.
T Consensus       290 ~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~----~~~~~~~~~t~l~i~~  345 (368)
T 3jue_A          290 RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAE----AAQGQAGDETYLDIFR  345 (368)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred             CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc----ccccCCCCCCHHHHHH
Confidence            9999999999999999999999999999999987644310    1345677888888774

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=3.1e-22  Score=120.11  Aligned_cols=87  Identities=37%  Similarity=0.593  Sum_probs=81.1

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCccc
Q 030904           70 DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCD  149 (169)
Q Consensus        70 ~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~  149 (169)
                      .|+||||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|+++       +.+|..|+||||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~d~~g~t~l~   73 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-------NAKDKNGRTPLH   73 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------CccCCCCCCHHH
Confidence            4789999999999999999999999999999999999999999999999999999999998       799999999999


Q ss_pred             chh-----hHHHHhhhccc
Q 030904          150 DQN-----DLVSLFIMQQE  163 (169)
Q Consensus       150 ~A~-----~~~~~li~~~~  163 (169)
                      +|+     +++++|++.|.
T Consensus        74 ~A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           74 LAARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             HHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHcCC
Confidence            995     99999998763

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=5.7e-22  Score=136.73  Aligned_cols=115  Identities=17%  Similarity=0.170  Sum_probs=98.4

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER   93 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~   93 (169)
                      ...+++.+++.|++++..  +..|.||||+|+..|+.+++++|++..+++++.++..|.||||+|+..++.+++++|+++
T Consensus        85 ~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  162 (222)
T 3ehr_A           85 NLSWLRECLDNRVGVNGL--DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK  162 (222)
T ss_dssp             CHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             cHHHHHHHHhCCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            456788888889887644  567889999999999999999999877899999999999999999999999999999999


Q ss_pred             CCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCc
Q 030904           94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT  130 (169)
Q Consensus        94 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~  130 (169)
                      |++++.+|..|.||||+|+..++.++++.+++.++..
T Consensus       163 ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          163 GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             TCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            9999999999999999999999999999999998876

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.85  E-value=3.3e-21  Score=121.26  Aligned_cols=105  Identities=21%  Similarity=0.296  Sum_probs=92.6

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL   91 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll   91 (169)
                      .....+++.+++.|.+++.  .+..|.||||+|+..|+.+++++|++. +++++.++..|+||||+|+..++.+++++|+
T Consensus        17 ~~~~~~v~~ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll   93 (123)
T 3aaa_C           17 NGDLDEVKDYVAKGEDVNR--TLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGHVSCVKLLL   93 (123)
T ss_dssp             TTCHHHHHHHHHTTCCTTS--CCTTSSCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCcCc--cCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3456678888888888764  456788999999999999999999988 9999999999999999999999999999999


Q ss_pred             HcCCCCCccCCCCCChHHHHHhcChHHH
Q 030904           92 ERGASLEAKDEDGAIPLHDACAGGFIEI  119 (169)
Q Consensus        92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~  119 (169)
                      ++|++++.+|..|.||+|+|...+..++
T Consensus        94 ~~ga~~~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           94 SKGADKTVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             HTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred             HcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence            9999999999999999999965544444

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.85  E-value=1.7e-20  Score=115.95  Aligned_cols=91  Identities=27%  Similarity=0.407  Sum_probs=84.5

Q ss_pred             CCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHH
Q 030904           32 SETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDA  111 (169)
Q Consensus        32 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a  111 (169)
                      ..+..+.|+||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            3466788999999999999999999988 999999999999999999999999999999999999999999999999999


Q ss_pred             HhcChHHHHHHH
Q 030904          112 CAGGFIEIVQLL  123 (169)
Q Consensus       112 ~~~~~~~~~~~l  123 (169)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            999999999876

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.85  E-value=1.4e-21  Score=125.11  Aligned_cols=113  Identities=19%  Similarity=0.228  Sum_probs=98.9

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      ....+++++++.|.+++..  +..|.||||+|+..|+.+++++|++. +++++.++..|.||||+|+..++.+++++|++
T Consensus        21 ~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   97 (137)
T 3c5r_A           21 GDIPSVEYLLQNGSDPNVK--DHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS   97 (137)
T ss_dssp             TCHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCcC--CCCCCCHHHHHHHcCCHHHHHHHHHc-CCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            3456788888989888754  55788999999999999999999998 99999999999999999999999999999999


Q ss_pred             cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCC
Q 030904           93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS  128 (169)
Q Consensus        93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~  128 (169)
                      .|++++.+|..|.||+++|+..+..++++++.+.+.
T Consensus        98 ~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           98 YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             TTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             cCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            999999999999999999999998888887766543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.83  E-value=7.4e-20  Score=122.69  Aligned_cols=120  Identities=23%  Similarity=0.215  Sum_probs=100.8

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV-EDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      ...+++.+++ |.+++.  .+..|.||||+|+..|+.+++++|++. |++++.++ ..|+||||+|+..++.+++++|++
T Consensus        56 ~~~~v~~Ll~-~~~~~~--~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  131 (183)
T 3deo_A           56 DEQALSQLLE-DRDVDA--VDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALVE  131 (183)
T ss_dssp             CHHHHHHHTT-TSCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHh-cCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHH
Confidence            4556777777 777764  456888999999999999999999998 99999888 889999999999999999999999


Q ss_pred             cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904           93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus        93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      +|++++.+|..|.||||+|++.++.                        ..+.+|+++|+     +++++|.++
T Consensus       132 ~ga~~~~~d~~g~tpl~~A~~~~~~------------------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          132 LGADIEVEDERGLTALELAREILKT------------------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HTCCTTCCCTTSCCHHHHHHHHHHT------------------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCCCcCCCCCCCCHHHHHHHhccC------------------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence            9999999999999999999863222                        33567888874     667776553

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.83  E-value=6e-20  Score=128.53  Aligned_cols=96  Identities=28%  Similarity=0.310  Sum_probs=86.3

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccC-CCCCcHHHHHHhcCCHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV-EDGDTALHLTCLYGYLPCVQLLL   91 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~~g~~~L~~a~~~~~~~~~~~ll   91 (169)
                      ....+++.+++ |.+++.  .+..|.||||+|+..|+.+++++|++. |++++.++ ..|+||||+|+..++.+++++|+
T Consensus        56 g~~~~v~~Ll~-~~~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  131 (244)
T 3ui2_A           56 ADEQALSQLLE-DRDVDA--VDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALV  131 (244)
T ss_dssp             TCHHHHHHTTT-TCCTTC--BCTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHc-CCCCCC--cCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            34557777777 777765  456789999999999999999999998 99999888 88999999999999999999999


Q ss_pred             HcCCCCCccCCCCCChHHHHH
Q 030904           92 ERGASLEAKDEDGAIPLHDAC  112 (169)
Q Consensus        92 ~~g~~~~~~~~~~~t~l~~a~  112 (169)
                      ++|++++.+|..|.||||+|+
T Consensus       132 ~~ga~~~~~d~~g~t~l~~A~  152 (244)
T 3ui2_A          132 ELGADIEVEDERGLTALELAR  152 (244)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHH
T ss_pred             HCCCCCCCCCCCCCcHHHHHH
Confidence            999999999999999999987

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.83  E-value=5.1e-22  Score=146.94  Aligned_cols=117  Identities=16%  Similarity=0.061  Sum_probs=80.4

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHhCCCCC---cccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC---CccCCCCCChHHH
Q 030904           37 HLRDLAAAAQLGDVHSLRLALDNLSGSI---DEPVEDGDTALHLTCLYGYLPCVQLLLERGASL---EAKDEDGAIPLHD  110 (169)
Q Consensus        37 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~---~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~---~~~~~~~~t~l~~  110 (169)
                      +.||||+|+..|+.+++++|++. ++..   +..+..|.||||+|+..|+.+++++|++.|+++   +..+.+ .||||+
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~-ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~  169 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLL-LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL  169 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC---CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHc-CCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence            45788888888888888888876 5411   122345667888888888888888888888642   222222 788888


Q ss_pred             HHhcChHHHHHHHHhcCCCchhhhhhhhc--ccCCCCCcccchh------hHHHHhhhcc
Q 030904          111 ACAGGFIEIVQLLINSASGTECVKRMLET--VDAEGDTDCDDQN------DLVSLFIMQQ  162 (169)
Q Consensus       111 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~--~~~~g~tpl~~A~------~~~~~li~~~  162 (169)
                      |+..|+.+++++|+++|+++       +.  +|..|.||||+|+      +++++|++.+
T Consensus       170 Aa~~G~~eiv~~Ll~~ga~~-------~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g  222 (376)
T 2aja_A          170 AAENGHLHVLNRLCELAPTE-------ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP  222 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCGGG-------HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             HHHCCCHHHHHHHHHcCCcc-------chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC
Confidence            88888888888888887775       33  5667778888776      6777777643

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=4.2e-20  Score=114.83  Aligned_cols=90  Identities=31%  Similarity=0.456  Sum_probs=84.6

Q ss_pred             ccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCC
Q 030904           66 EPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGD  145 (169)
Q Consensus        66 ~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~  145 (169)
                      .+|..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..++.+++++|++.|+++       +.+|..|.
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------~~~d~~g~   76 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-------NARSKDGN   76 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-------TCCCTTCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-------cccCCCCC
Confidence            45788999999999999999999999999999999999999999999999999999999999997       78999999


Q ss_pred             Ccccchh-----hHHHHhhhcc
Q 030904          146 TDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       146 tpl~~A~-----~~~~~li~~~  162 (169)
                      ||||+|+     +++++|++.|
T Consensus        77 tpl~~A~~~~~~~~~~~Ll~~g   98 (115)
T 2l6b_A           77 TPEHLAKKNGHHEIVKLLDAKG   98 (115)
T ss_dssp             CTTHHHHTTTCHHHHHHHHTTS
T ss_pred             CHHHHHHHCCCHHHHHHHHHcC
Confidence            9999995     8999999853

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.81  E-value=1.9e-21  Score=143.83  Aligned_cols=134  Identities=11%  Similarity=0.052  Sum_probs=107.8

Q ss_pred             ChHHHHHHHHhcCCCCcc-cCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCC---CcccCCCCCcHHHHHHhcCCHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDL-ESETPPHLRDLAAAAQLGDVHSLRLALDNLSGS---IDEPVEDGDTALHLTCLYGYLPCVQ   88 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~-~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~---~~~~~~~g~~~L~~a~~~~~~~~~~   88 (169)
                      +..++++++++.|..... ...+..+.||||+|+..|+.+++++|++. |++   .+..+.. .||||+|+..|+.++++
T Consensus       103 G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~  180 (376)
T 2aja_A          103 GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAEN-YHAFRLAAENGHLHVLN  180 (376)
T ss_dssp             CCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHH-HHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC-CCCccccccCCCC-CCHHHHHHHCCCHHHHH
Confidence            445678888888773321 23355788999999999999999999998 764   2222223 89999999999999999


Q ss_pred             HHHHcCCCCCc--cCCCCCChHHHHH-hcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904           89 LLLERGASLEA--KDEDGAIPLHDAC-AGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM  160 (169)
Q Consensus        89 ~ll~~g~~~~~--~~~~~~t~l~~a~-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~  160 (169)
                      +|+++|++++.  .|..|.||||+|+ ..|+.+++++|++.|.              .|.||++.|+     +++++|++
T Consensus       181 ~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------------~~~taL~~Aa~~g~~evv~lL~~  246 (376)
T 2aja_A          181 RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------------MLAYAEIHEFEYGEKYVNPFIAR  246 (376)
T ss_dssp             HHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------------HHHHHHHCTTTTTTTTHHHHHHH
T ss_pred             HHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------------ccchHHHHHHHCCCHHHHHHHHh
Confidence            99999999877  8888999999999 9999999999998652              2689999995     89999998


Q ss_pred             cc
Q 030904          161 QQ  162 (169)
Q Consensus       161 ~~  162 (169)
                      .+
T Consensus       247 ~g  248 (376)
T 2aja_A          247 HV  248 (376)
T ss_dssp             HH
T ss_pred             cC
Confidence            64

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=2.4e-19  Score=110.72  Aligned_cols=88  Identities=30%  Similarity=0.393  Sum_probs=77.9

Q ss_pred             CcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCC
Q 030904           64 IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAE  143 (169)
Q Consensus        64 ~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~  143 (169)
                      ....+..|.|+||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|+++       +.+|..
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-------~~~d~~   89 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-------XAQDKF   89 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTT
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------cccccC
Confidence            3345678999999999999999999999999999999999999999999999999999999999997       789999


Q ss_pred             CCCcccchh-----hHHHHh
Q 030904          144 GDTDCDDQN-----DLVSLF  158 (169)
Q Consensus       144 g~tpl~~A~-----~~~~~l  158 (169)
                      |.||||+|+     +++++|
T Consensus        90 g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           90 GKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             SCCHHHHHHHHTCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHh
Confidence            999999996     566554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	169
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.001
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.003
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.002
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-05

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (173), Expect = 1e-15
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 34  TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER 93
           TP H+     A+ +G +  ++  L     S +      +T LH+    G+    + LL+ 
Sbjct: 2   TPLHV-----ASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQN 55

Query: 94  GASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
            A + AK +D   PLH A   G   +V+LL+ 
Sbjct: 56  KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE 87

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 5e-13
 Identities = 19/55 (34%), Positives = 26/55 (47%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           + G + LH     G+   V LLL+ GAS      DG  PL  A   G+I +  +L
Sbjct: 328 KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 8e-09
 Identities = 22/62 (35%), Positives = 32/62 (51%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
                + G T LH+   YG +   +LLLER A   A  ++G  PLH A     ++IV+LL
Sbjct: 125 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 184

Query: 124 IN 125
           + 
Sbjct: 185 LP 186

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 4e-08
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 1/99 (1%)

Query: 41  LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAK 100
           L  AA+ G V    L L+      +   ++G T LH+   +  L  V+LLL RG S  + 
Sbjct: 136 LHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 194

Query: 101 DEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET 139
             +G  PLH A     +E+ + L+              T
Sbjct: 195 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVT 233

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 4e-07
 Identities = 23/62 (37%), Positives = 32/62 (51%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           +D     G T LH+   YG +  V+ LL+  A + AK + G  PLH A   G  +IV LL
Sbjct: 290 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 349

Query: 124 IN 125
           + 
Sbjct: 350 LK 351

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 6e-06
 Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 26  VNMDLESETPPHLRD------LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTC 79
             + LE +  P+         L  A    ++  ++L L    GS   P  +G T LH+  
Sbjct: 148 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL-LLPRGGSPHSPAWNGYTPLHIAA 206

Query: 80  LYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQ 121
               +   + LL+ G S  A+   G  PLH A   G  E+V 
Sbjct: 207 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA 248

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 7e-06
 Identities = 29/130 (22%), Positives = 45/130 (34%), Gaps = 39/130 (30%)

Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
           +++ ETP H+     AA+ G     +  L N    ++   +D  T LH     G+   V+
Sbjct: 30  NVKVETPLHM-----AARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLHCAARIGHTNMVK 83

Query: 89  LLLER---------------------------------GASLEAKDEDGAIPLHDACAGG 115
           LLLE                                   AS     + G  PLH A   G
Sbjct: 84  LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG 143

Query: 116 FIEIVQLLIN 125
            + + +LL+ 
Sbjct: 144 KVRVAELLLE 153

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 21/71 (29%), Positives = 30/71 (42%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSAS 128
             G T LHL    G+   V LLL + A+    ++ G  PLH     G + +  +LI    
Sbjct: 229 VQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 288

Query: 129 GTECVKRMLET 139
             +   RM  T
Sbjct: 289 MVDATTRMGYT 299

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
            +   + G T LHL    G++P   +L++ G  ++A    G  PLH A   G I++V+  
Sbjct: 257 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF- 315

Query: 124 INSASGTECVKRMLETVDAEGDT 146
                     +  +      G +
Sbjct: 316 ------LLQHQADVNAKTKLGYS 332

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 9/79 (11%)

Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
                +P H      AAQ G    + L L N   S +E   DG T L +    GY+    
Sbjct: 327 TKLGYSPLHQ-----AAQQGHTDIVTLLLKN-GASPNEVSSDGTTPLAIAKRLGYISVTD 380

Query: 89  LL---LERGASLEAKDEDG 104
           +L    +  + +   D+  
Sbjct: 381 VLKVVTDETSFVLVSDKHR 399

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 66.7 bits (161), Expect = 2e-14
 Identities = 18/56 (32%), Positives = 25/56 (44%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLI 124
           EDG T + L    G +  V  L+++GAS+EA D         A A     IV +  
Sbjct: 219 EDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 14/94 (14%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL- 91
           E+P  L       +    +++   +   S +I +P     T LH           + L+ 
Sbjct: 1   ESPIKL-----HTEAAGSYAITEPITRESVNIIDP-RHNRTVLHWIASNSSAEKSEDLIV 54

Query: 92  -------ERGASLEAKDEDGAIPLHDACAGGFIE 118
                    GA + A D D   PL  A       
Sbjct: 55  HEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.6 bits (96), Expect = 1e-05
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLL-LERGASLEAKDEDGAIPLHDACAGGFIEIVQL 122
            D     G TALH       +P V+ L  E+G++ + +DEDG  P+  A   G IE+V  
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 123 LIN 125
           LI 
Sbjct: 240 LIQ 242

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 2e-05
 Identities = 9/99 (9%), Positives = 26/99 (26%), Gaps = 3/99 (3%)

Query: 72  DTALHLTCLY-GYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT 130
           ++ + L     G     + +     ++          LH   +    E  + LI   +  
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 131 ECVKRM-LETVDAEGDTDCDDQNDLVSLFIMQQEVNTWM 168
                  +  +D + +T            ++   +    
Sbjct: 60  CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA 98

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.0 bits (84), Expect = 6e-04
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
           D + +TP  L     AAQ G +  +   +     S++       TA  L     +   V 
Sbjct: 218 DEDGKTPIML-----AAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVD 271

Query: 89  LLLE 92
           +   
Sbjct: 272 IFDR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 5e-12
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 2/108 (1%)

Query: 20  LFEEDGVNMDLESET-PPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLT 78
           L +E G +++         L     ++   DV ++   L +    ++   E G T L L 
Sbjct: 167 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226

Query: 79  CLYGYLPCVQLLLER-GASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
               +L  VQ LLE+    +   D DG   L  A      +I +LL  
Sbjct: 227 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKD-EDGAIPLHDACAGGFIEIVQLLIN 125
           + +  L        +  VQ LLE GA++  ++ E G  PLH+A      +IV+LL+ 
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 29  DLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQ 88
               +TP  L     A +   +  ++  L+     I++   DG TAL L          +
Sbjct: 216 GERGKTPLIL-----AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270

Query: 89  LLLERGASLEAKD 101
           LL +RGAS +  D
Sbjct: 271 LLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 3e-08
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 41  LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCV----QLLLERGAS 96
           L  AA+ G V  L++ LD +   ++     G  AL    L      V     LLL+ GA 
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 97  LEAKDEDGAIPLHDACAGGFIEIVQLLINSA 127
           +  + E G  PL  A     + +VQ L+   
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.2 bits (134), Expect = 1e-10
 Identities = 12/92 (13%), Positives = 32/92 (34%)

Query: 20  LFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTC 79
           + ++    +   +       +     +   +         ++  ++    +GDT L++  
Sbjct: 208 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 267

Query: 80  LYGYLPCVQLLLERGASLEAKDEDGAIPLHDA 111
             G +  V  LL+ GA     ++ G  P+   
Sbjct: 268 RLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.0 bits (118), Expect = 2e-08
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 1/87 (1%)

Query: 27  NMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV-EDGDTALHLTCLYGYLP 85
           + +  SE     +     +    +  +  A  N   +++ PV E G+T LH       L 
Sbjct: 62  SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLE 121

Query: 86  CVQLLLERGASLEAKDEDGAIPLHDAC 112
            V+ L++ G++    D  G   L  A 
Sbjct: 122 LVKHLVKHGSNRLYGDNMGESCLVKAV 148

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.8 bits (107), Expect = 6e-07
 Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 10/135 (7%)

Query: 1   MAVPRNGMMEEDDSEEDNALFEEDGVNMDLESETPPHLRDLAA-------AAQLGDVHSL 53
            AV      +    E          +  D  + T  H   + +       AA+      +
Sbjct: 146 KAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILM 205

Query: 54  RLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER---GASLEAKDEDGAIPLHD 110
              +   +  I     + ++  +          ++ L  +      L A+D +G   L+ 
Sbjct: 206 GWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNI 265

Query: 111 ACAGGFIEIVQLLIN 125
           A   G I IV  L++
Sbjct: 266 AARLGNISIVDALLD 280

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 3e-10
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQ 121
            G +ALH     G LP V+ L+  GA    K+     PL  A +   I+I++
Sbjct: 176 SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 1e-09
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLL----ERGASLEAKDEDGAIPLHDAC 112
           EDGDT LH+  + G LP V  L+    + G  L+  +     PLH A 
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV 48

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.003
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 102 EDGAIPLHDACAGGFIEIVQLLIN 125
           EDG  PLH A   G +  V  L+N
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVN 24

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 55.3 bits (132), Expect = 3e-10
 Identities = 16/116 (13%), Positives = 30/116 (25%), Gaps = 10/116 (8%)

Query: 20  LFEEDGVNMDLESETPPHLRD------LAAAAQLGDVHSLRLALDNLSG--SIDEPVEDG 71
           L+         +  +  H +          AA  G   +L      L+    +     + 
Sbjct: 67  LYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAEN 126

Query: 72  DTALHLTCLYGYLPCVQLLLERGASLEAKDED--GAIPLHDACAGGFIEIVQLLIN 125
             A  L    G+L  +  L E   +                A   G + ++  L  
Sbjct: 127 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE 182

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 12/74 (16%), Positives = 18/74 (24%), Gaps = 5/74 (6%)

Query: 57  LDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGA-----SLEAKDEDGAIPLHDA 111
            D ++ S           L        L  ++ LL                D    L  A
Sbjct: 265 FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 324

Query: 112 CAGGFIEIVQLLIN 125
              G      LL++
Sbjct: 325 LRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 42.2 bits (98), Expect = 9e-06
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 41  LAAAAQLGDVHSLRLALDN-LSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLE- 98
              AA+ G +H L    +   +  +     +   A  L    G+L  +  L E   +   
Sbjct: 130 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 189

Query: 99  --AKDEDGAIPLHDACAGGFIEIVQLLINS 126
              + E+       A   G   ++  L++ 
Sbjct: 190 AMIQAENYYAFRWAAVGRGHHNVINFLLDC 219

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 14/73 (19%), Positives = 19/73 (26%), Gaps = 4/73 (5%)

Query: 24  DGVNMDLESETPPHLRDLAAAAQLGDVHSLRLAL----DNLSGSIDEPVEDGDTALHLTC 79
           D V      +    LR+L        +  +R  L                D +  L L  
Sbjct: 266 DLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL 325

Query: 80  LYGYLPCVQLLLE 92
             G      LLL 
Sbjct: 326 RLGNQGACALLLS 338

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.1 bits (131), Expect = 3e-10
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 57  LDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAG-- 114
           L      ++    DG T LH    +G     ++L+E    +EA ++ G      A     
Sbjct: 218 LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL 277

Query: 115 GFIEIVQLLIN 125
           G++E +Q   N
Sbjct: 278 GYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.5 bits (119), Expect = 1e-08
 Identities = 21/68 (30%), Positives = 34/68 (50%)

Query: 57  LDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGF 116
           L++   +     + G TALH+    GY   ++LL++    +  KD DG  PLH A   G 
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244

Query: 117 IEIVQLLI 124
            E  ++L+
Sbjct: 245 EEACRILV 252

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.1 bits (118), Expect = 2e-08
 Identities = 17/53 (32%), Positives = 23/53 (43%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQL 122
           D        C  G    V  LLERGA +   + DG   LH AC    +++V+ 
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKF 91

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.3 bits (129), Expect = 5e-10
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERGAS---LEAKDEDGAIPLHDACAGG 115
           EDGDTALHL  ++ + P +  LL   A    L+ +++ G   LH A   G
Sbjct: 7   EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG 56

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.9 bits (128), Expect = 7e-10
 Identities = 16/53 (30%), Positives = 22/53 (41%)

Query: 73  TALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           T LHL         ++LLL+ GA   A+   G  PL  A       + +LL  
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA 246

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 4/60 (6%)

Query: 45  AQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDG 104
            +      L L L          +  G T L    L       +LL   GA    + EDG
Sbjct: 200 VEAQAASVLELLLKA-GADPTARMYGGRTPLGSALLRPNPILARLLRAHGA---PEPEDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 4e-05
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 33  ETPPHLRDLAAAAQLGDVHSLRLALDNLSG--SIDEPVEDGDTALHLTCLYGYLPCVQLL 90
           +T  HL     A        L   L   +G   +D   + G TALHL  + G    V+ L
Sbjct: 10  DTALHL-----AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 91  LERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINS 126
              GA +   +  G   LH AC         +L+  
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQP 100

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 100 KDEDGAIPLHDACAGGFIEIVQLLINSASGTECV 133
             EDG   LH A        +  L+  ++G E +
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYL 38

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.9 bits (125), Expect = 1e-09
 Identities = 15/51 (29%), Positives = 21/51 (41%)

Query: 73  TALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           T L L    G     + LL+  A+ E  D    +P   A      +IV+LL
Sbjct: 158 TPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.9 bits (99), Expect = 4e-06
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 86  CVQLLLERGASLEAK-DEDGAIPLHDACAGGFIEIVQLL 123
            +  LL +GA L A  D+ G   LH A      +  + L
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 1e-09
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 57  LDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGF 116
           L     S +    +G+T LHL C    +   +LL+ +GAS+  ++++   PL  A  GG 
Sbjct: 155 LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGL 213

Query: 117 IEIVQLLI 124
             I++ ++
Sbjct: 214 GLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 2e-08
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++   ++G T LH            +LLE GA+ +AKD   A  +H A A G ++++ +L
Sbjct: 96  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 155

Query: 124 IN 125
           + 
Sbjct: 156 LY 157

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 33/118 (27%)

Query: 41  LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLP--------------- 85
           +   A  G +  L+ ++           +D  TALH  C  G+                 
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 86  ------------------CVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
                              V+ LL +GA + A +++G  PLH A +    EI  +L+ 
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 124

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 7e-05
 Identities = 20/63 (31%), Positives = 30/63 (47%)

Query: 63  SIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQL 122
           + D       TA+H     G L  + +LL   AS   +D +G  PLH AC    +E  +L
Sbjct: 128 NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKL 187

Query: 123 LIN 125
           L++
Sbjct: 188 LVS 190

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 2e-09
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 70  DGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASG 129
           +G TALHL         V LLL+ GA +      G  P           I Q L      
Sbjct: 144 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ--LT 201

Query: 130 TECVKRMLETVDAEG-DTD 147
            E ++ + E+ D E  DT+
Sbjct: 202 LENLQMLPESEDEESYDTE 220

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 1e-07
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 70  DGDTALHLTCLYGYLPC----VQLLLERGASLEAKDEDGAIPLHDAC 112
           DGD+ LHL  ++         ++ +    A L  ++     PLH A 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAV 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 5e-08
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 72  DTALHLTCLYGYLPCVQLLLE-RGASLEAKDEDGAIPLHDACAGG 115
           +  LH  C+      VQ LL  + + L  KD+DG IPLH + +  
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQ 45

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 6e-07
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLER-GASLEAKDEDGAIPLHDACAGGFIEIVQLLIN 125
           + G T L      G+     LL+E+ GA  +  D  GA     A      ++ +  +N
Sbjct: 170 KQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN 224

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 9/54 (16%), Positives = 19/54 (35%)

Query: 41 LAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG 94
          L  A    +   ++  L +    + +  +DG   LH +  +        LL + 
Sbjct: 4  LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (107), Expect = 2e-07
 Identities = 27/139 (19%), Positives = 39/139 (28%), Gaps = 41/139 (29%)

Query: 32  SETPPHLRDLAAAAQLGDVHSLRLALD-----NLSGSIDEPVEDGDTALHLTCL---YGY 83
           ++T   L  L  A +  D+  L  A            +    E  +TALHL         
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 84  LPCVQLLLERGASL---------------------------------EAKDEDGAIPLHD 110
           L  V  L++   +L                                 E  +E G  PL  
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 111 ACAGGFIEIVQLLINSASG 129
           A         +LL  + SG
Sbjct: 121 AKRLKHEHCEELLTQALSG 139

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 9e-06
 Identities = 8/40 (20%), Positives = 14/40 (35%)

Query: 73  TALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC 112
             L      G L  +  LL+   ++ A++  G   L    
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK 42

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 1e-04
 Identities = 11/26 (42%), Positives = 12/26 (46%)

Query: 69  EDGDTALHLTCLYGYLPCVQLLLERG 94
             GDTA  L  LYG    V L+   G
Sbjct: 131 HKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.002
 Identities = 6/27 (22%), Positives = 10/27 (37%)

Query: 98  EAKDEDGAIPLHDACAGGFIEIVQLLI 124
             ++  G      A   G  E+V L+ 
Sbjct: 127 GHRNHKGDTACDLARLYGRNEVVSLMQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.4 bits (95), Expect = 1e-05
 Identities = 11/53 (20%), Positives = 24/53 (45%)

Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
             TALH    + +   V+LL++ GA +  + +        +   G  ++ ++L
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 1e-05
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 64  IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLL 123
           ++ P   G   +HL    G+   V  L    + L  +D  G  PL  A   G  ++V +L
Sbjct: 94  VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDIL 152

Query: 124 IN 125
             
Sbjct: 153 QG 154

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 2e-05
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 71  GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDG---AIPLHDACAGGFIEIVQLLIN 125
           G T LH       +   + L+E GA++ A        A    +    G+ +  Q L  
Sbjct: 67  GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	169
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.91
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.91
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.9
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.88
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.88
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.88
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.88
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.85
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.85
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.83
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.83
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.82
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.81
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.77
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.76
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.75
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.69

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=4.1e-30  Score=159.93  Aligned_cols=114  Identities=21%  Similarity=0.389  Sum_probs=107.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHH
Q 030904           39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE  118 (169)
Q Consensus        39 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~  118 (169)
                      |||++|+..|+.+++++|++. |++++.++..|+||||+|+..++.++++++++.|++++.+|..|+||||+|+..|+.+
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTT-TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHh-hhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            799999999999999999998 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-hHHHHhhh
Q 030904          119 IVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-DLVSLFIM  160 (169)
Q Consensus       119 ~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-~~~~~li~  160 (169)
                      ++++|+++|+++       +.+|.+|.||||+|. +.++.||+
T Consensus        83 ~v~~Ll~~Gad~-------~~~d~~G~t~l~~a~~~~i~~LL~  118 (118)
T d1myoa_          83 CVKLLLSKGADK-------TVKGPDGLTALEATDNQAIKALLQ  118 (118)
T ss_dssp             HHHHHHTTCCCS-------SSSSSSTCCCCCTCSSTTTGGGGC
T ss_pred             hhhhhhcccccc-------eeeCCCCCCHHHHHhHHHHHHhcC
Confidence            999999999998       799999999999995 55666653

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.3e-27  Score=162.51  Aligned_cols=138  Identities=20%  Similarity=0.220  Sum_probs=127.2

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      ...++++++++.|.+++.  .+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+++..++..++++|..
T Consensus        81 ~~~~i~~~Ll~~~~d~~~--~d~~g~tpL~~A~~~~~~e~~~~Ll~~-g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~  157 (223)
T d1uoha_          81 GRDEIVKALLGKGAQVNA--VNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRAAAKGNLKMIHILLY  157 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccchhHHHhccCceeEe--eCCCCCchhhHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCccchhhhhcCCcchhhhhcc
Confidence            345788899999887764  466788999999999999999999988 99999999999999999999999999999999


Q ss_pred             cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh----hHHHHhhh
Q 030904           93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN----DLVSLFIM  160 (169)
Q Consensus        93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~----~~~~~li~  160 (169)
                      .+.+++.+|..|+||||.|++.|+.+++++|++.|+++       +.+|.+|+||||+|.    +++++||+
T Consensus       158 ~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~-------~~~d~~g~tpl~~A~~~~~~i~~~Ll~  222 (223)
T d1uoha_         158 YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI-------YIENKEEKTPLQVAKGGLGLILKRMVE  222 (223)
T ss_dssp             TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-------CCCCTTSCCHHHHCCTTHHHHHHHHHC
T ss_pred             ccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHCCCHHHHhcccC
Confidence            99999999999999999999999999999999999998       799999999999994    88888886

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.6e-27  Score=148.54  Aligned_cols=116  Identities=25%  Similarity=0.341  Sum_probs=106.7

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCC-ChHHHHHhcC
Q 030904           37 HLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGA-IPLHDACAGG  115 (169)
Q Consensus        37 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~-t~l~~a~~~~  115 (169)
                      +.++||+|+..|+.+++++|++. |++++.++..|.||+|+|+ .++.+++++|+++|++++.++..+. ||||+|++.|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~-gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHc-CCccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            34789999999999999999998 9999999999999999765 7999999999999999999988776 6999999999


Q ss_pred             hHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904          116 FIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus       116 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      +.+++++|+++|+++       +.+|..|+||||+|+     +++++|++.
T Consensus        81 ~~~~v~~Ll~~ga~~-------~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          81 FLDTLVVLHRAGARL-------DVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             CHHHHHHHHHHTCCS-------SCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             ccccccccccccccc-------ccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            999999999999998       799999999999995     899988763

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-26  Score=146.28  Aligned_cols=115  Identities=21%  Similarity=0.287  Sum_probs=105.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHH
Q 030904           39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE  118 (169)
Q Consensus        39 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~  118 (169)
                      ++|+.||..|+.+++++|+++ |++++.+|..|+||||+|+..++.+++++|++.|++++.+|.+|+||||+|+..|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~-g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHH
Confidence            679999999999999999998 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCchhhhhhhhccc-CCCCCcccch-------hhHHHHhhhc
Q 030904          119 IVQLLINSASGTECVKRMLETVD-AEGDTDCDDQ-------NDLVSLFIMQ  161 (169)
Q Consensus       119 ~~~~ll~~~~~~~~~~~~~~~~~-~~g~tpl~~A-------~~~~~~li~~  161 (169)
                      ++++|+++|+++       +.++ ..++||++++       .+++++|+..
T Consensus        82 ~v~~Ll~~ga~v-------~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          82 VCKFLVESGAAV-------FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHTTCCT-------TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHcCCCc-------ccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            999999999998       5554 4588887765       2899999874

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.5e-25  Score=145.40  Aligned_cols=138  Identities=25%  Similarity=0.310  Sum_probs=120.8

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL   91 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll   91 (169)
                      ++.+.+..++.+.+.+++.  .+..|+||||+|+ .|+.+++++|++. +.+++..+..|.+|++.++..++.+++++++
T Consensus        13 g~~~~vk~lL~~~~~~~n~--~d~~g~t~L~~A~-~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l   88 (156)
T d1bd8a_          13 GDVQEVRRLLHRELVHPDA--LNRFGKTALQVMM-FGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTGFLDTLKVLV   88 (156)
T ss_dssp             TCHHHHHHHHHTTCCCTTC--CCTTSCCHHHHSC-TTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCCCCCc--cCCCCCccccccc-ccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            4455556666666777764  4568889999886 5889999999988 8899999999999999999999999999999


Q ss_pred             HcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904           92 ERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus        92 ~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      ++|++++.+|..|.||||+|++.|+.+++++|+ .|+++       +.+|.+|+||||+|+     +++++|+++
T Consensus        89 ~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~-------~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          89 EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDL-------HRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCT-------TCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccCCCCeeecccccccccccccccc-ccccc-------cccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999999999999999999999999887 67776       789999999999995     899999864

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.8e-25  Score=153.65  Aligned_cols=90  Identities=24%  Similarity=0.292  Sum_probs=71.7

Q ss_pred             cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCc-cCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCC
Q 030904           67 PVEDGDTALHLTCLYGYLPCVQLLLERGASLEA-KDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGD  145 (169)
Q Consensus        67 ~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~  145 (169)
                      ++..|.||||+|+..++.+++++|++.+++.+. .+..|.||||+|++.|+.+++++|+++|+++       +.+|..|+
T Consensus       154 ~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadi-------n~~d~~g~  226 (255)
T d1oy3d_         154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-------TARMYGGR  226 (255)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSC
T ss_pred             ccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCC-------CCCCCCCC
Confidence            445567788888888888888888888776654 4567888888888888888888888888887       78888888


Q ss_pred             Ccccchh-----hHHHHhhhccc
Q 030904          146 TDCDDQN-----DLVSLFIMQQE  163 (169)
Q Consensus       146 tpl~~A~-----~~~~~li~~~~  163 (169)
                      ||||+|+     +++++|++.|.
T Consensus       227 t~L~~A~~~~~~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         227 TPLGSALLRPNPILARLLRAHGA  249 (255)
T ss_dssp             CHHHHHHTSSCHHHHHHHHHTTC
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCC
Confidence            9998884     88888888665

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.5e-25  Score=143.35  Aligned_cols=140  Identities=25%  Similarity=0.365  Sum_probs=126.9

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      +..+++++|++.|++++..  +..|.||||+|+ .|+.+++++|++. +++++.++..+.++++.++..+....+.++++
T Consensus        12 g~~~~v~~Ll~~g~d~n~~--d~~g~TpL~~A~-~~~~ei~~~Ll~~-~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~   87 (156)
T d1ihba_          12 GDLEQLTSLLQNNVNVNAQ--NGFGRTALQVMK-LGNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFLDTLQTLLE   87 (156)
T ss_dssp             TCHHHHHHHTTSCCCTTCC--CTTSCCHHHHCC-SSCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCcCcc--CCcccccccccc-ccccccccccccc-ccccccccccCccccccccccccccccccccc
Confidence            4567889999999998754  567889999875 7899999999998 99999999999999999999999999999999


Q ss_pred             cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904           93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus        93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      .+.+++..+..|.+|+|+|+..++.+++++|++++...      ++.+|.+|+||||+|+     +++++|++.|
T Consensus        88 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~------~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          88 FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN------VGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccc------ccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999999999999999999999999999988743      3789999999999995     9999999875

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.1e-25  Score=149.98  Aligned_cols=143  Identities=22%  Similarity=0.251  Sum_probs=105.0

Q ss_pred             CCChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHh-------------------------------
Q 030904           11 EDDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDN-------------------------------   59 (169)
Q Consensus        11 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~-------------------------------   59 (169)
                      .+.-+.+.+++.+.+..++  ..+..|+||||+|+..|+.+++++++..                               
T Consensus        13 ~G~~~~v~~~l~~~~~~~~--~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll   90 (223)
T d1uoha_          13 SGKLEELKESILADKSLAT--RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL   90 (223)
T ss_dssp             TTCHHHHHHHHHHCGGGGG--CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             hCCHHHHHHHHHhCCCcCc--CcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHh
Confidence            4555677777777666665  3466788999999998887777666544                               


Q ss_pred             -CCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhh
Q 030904           60 -LSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLE  138 (169)
Q Consensus        60 -~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~  138 (169)
                       .+++++.++..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++..++++|++.+.++       +
T Consensus        91 ~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i-------~  163 (223)
T d1uoha_          91 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST-------N  163 (223)
T ss_dssp             HTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-------C
T ss_pred             ccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhcccccee-------e
Confidence             14555566666777777777777777777777777777777777777777777777777777777777665       7


Q ss_pred             cccCCCCCcccchh-----hHHHHhhhcc
Q 030904          139 TVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       139 ~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      .+|..|+||||.|+     +++++|++.|
T Consensus       164 ~~d~~g~TpL~~Aa~~g~~~~v~~LL~~G  192 (223)
T d1uoha_         164 IQDTEGNTPLHLACDEERVEEAKLLVSQG  192 (223)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             eccCCCCceeccccccCcHHHHHHHHHCC
Confidence            88999999999994     8999999854

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=1e-25  Score=152.22  Aligned_cols=135  Identities=21%  Similarity=0.264  Sum_probs=118.2

Q ss_pred             HHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcc----------------------------
Q 030904           15 EEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDE----------------------------   66 (169)
Q Consensus        15 ~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~----------------------------   66 (169)
                      .+++++|+++|++++.. .+..|.||||+||..|+.+++++|++. +++++.                            
T Consensus         2 ~~~v~~Ll~~g~din~~-~d~~G~t~L~~A~~~g~~e~v~~Ll~~-g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           2 AQVISDLLAQGAELNAT-MDKTGETSLHLAARFARADAAKRLLDA-GADANSQDNTGRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHHCCCCcCcC-cCCCCCCHHHHHHHcCCHHHHHHHHhh-cccccccccccccccccccccccccccccccccc
Confidence            47899999999998642 245788999999999999999999987 665543                            


Q ss_pred             ---------------------------------------cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCh
Q 030904           67 ---------------------------------------PVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIP  107 (169)
Q Consensus        67 ---------------------------------------~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~  107 (169)
                                                             ++..|.|||++++.++...++..++..+.+++..|..|.||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~Tp  159 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETP  159 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccc
Confidence                                                   34457899999999999999999999999999999999999


Q ss_pred             HHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHh
Q 030904          108 LHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLF  158 (169)
Q Consensus       108 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~l  158 (169)
                      ||+|+..|+.+++++|+++|+++       +.+|..|+||||+|+     +++++|
T Consensus       160 L~~A~~~g~~~~v~~Ll~~gad~-------n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         160 LFLAAREGSYEASKALLDNFANR-------EITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cchhccccHHHHHHHHHHCCCCC-------CCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999999998       789999999999995     777765

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=3.7e-24  Score=138.03  Aligned_cols=135  Identities=25%  Similarity=0.270  Sum_probs=120.9

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      ...+++++|++.|++.+   .+..|+||||+|+..++.+.+..++.. .......+..+.++++.++...+.+++++++.
T Consensus        13 g~~~~v~~LL~~ga~~~---~~~~g~t~L~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   88 (153)
T d1awcb_          13 GQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHANIVEVLLK   88 (153)
T ss_dssp             TCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCcc---cccCCCccccccccccccccccccccc-cccccccccccccccccccccccceeeecccc
Confidence            45678889999998765   366789999999999999999999887 55556667788899999999999999999999


Q ss_pred             cCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHh
Q 030904           93 RGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLF  158 (169)
Q Consensus        93 ~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~l  158 (169)
                      .|++.+.++..|.||||+|+..|+.+++++|+++|+++       +.+|.+|.||||+|+     +++++|
T Consensus        89 ~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-------~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          89 HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-------HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCccccccccCchHHHhhhhcchhheeeeccccccCC-------cccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999999999999999999999999999999998       799999999999996     777765

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.91  E-value=4.6e-24  Score=150.71  Aligned_cols=138  Identities=25%  Similarity=0.398  Sum_probs=111.8

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcc--------------------------
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDE--------------------------   66 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~--------------------------   66 (169)
                      +..++++.|++.|++++..  +..|.||||+|+..|+.+++++|++. +.+...                          
T Consensus        51 G~~~~v~~Ll~~Gadvn~~--d~~G~T~L~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~  127 (291)
T d1s70b_          51 GDTEEVLRLLERGADINYA--NVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLDIAEYLIS  127 (291)
T ss_dssp             TCHHHHHHHHHHCCCTTCB--CTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCcc--CCCCCcHHHHHHhcCCceeeeeeccc-ccccccccccccccccccccccccchhhcccc
Confidence            3455778888999888754  55778999999999999999999876 443222                          


Q ss_pred             -------------------------------------------------------------------cCCCCCcHHHHHH
Q 030904           67 -------------------------------------------------------------------PVEDGDTALHLTC   79 (169)
Q Consensus        67 -------------------------------------------------------------------~~~~g~~~L~~a~   79 (169)
                                                                                         .+..|.||||+|+
T Consensus       128 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~  207 (291)
T d1s70b_         128 QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAA  207 (291)
T ss_dssp             TTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHH
T ss_pred             cCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHH
Confidence                                                                               2234568888888


Q ss_pred             hcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-hHHHHh
Q 030904           80 LYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-DLVSLF  158 (169)
Q Consensus        80 ~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-~~~~~l  158 (169)
                      ..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|+++       +.+|..|+||||+|+ +++++|
T Consensus       208 ~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv-------~~~d~~G~TaL~~A~e~~~~~L  280 (291)
T d1s70b_         208 AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM-------EAVNKVGQTAFDVADEDILGYL  280 (291)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCTTTSCCSGGGHHH
T ss_pred             HcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------CCcCCCCCCHHHHHHHHHHHHH
Confidence            888888899999899999999999999999999999999999999999987       788999999999997 455666


Q ss_pred             hh
Q 030904          159 IM  160 (169)
Q Consensus       159 i~  160 (169)
                      .+
T Consensus       281 ~~  282 (291)
T d1s70b_         281 EE  282 (291)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.9e-23  Score=142.75  Aligned_cols=139  Identities=20%  Similarity=0.205  Sum_probs=118.9

Q ss_pred             HHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcC-C
Q 030904           17 DNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERG-A   95 (169)
Q Consensus        17 ~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g-~   95 (169)
                      ++..+...+...+....+..+.++++.++..++.++++.|+.. +...+.++..|+||||+|+..++.+++++|++.+ .
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~  163 (229)
T d1ixva_          85 VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS  163 (229)
T ss_dssp             HHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCC
T ss_pred             cccccccccccccccccccccccccccccccchhhhhhhhhhh-cccccccCCCCCCccchhhhcccccccccccccccc
Confidence            4444445555555555566677888888888888888888887 8888888999999999999999999999999987 6


Q ss_pred             CCCccCCCCCChHHHHHhcChHHHHHHHHh-cCCCchhhhhhhhcccCCCCCcccchh--hHHHHhhhccc
Q 030904           96 SLEAKDEDGAIPLHDACAGGFIEIVQLLIN-SASGTECVKRMLETVDAEGDTDCDDQN--DLVSLFIMQQE  163 (169)
Q Consensus        96 ~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~g~tpl~~A~--~~~~~li~~~~  163 (169)
                      +++.+|..|.||||+|+..|+.+++++|++ .|+++       +.+|.+|+||||+|+  +++++||++|.
T Consensus       164 ~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~-------~~~d~~g~t~l~~A~~~~~~~~Ll~~g~  227 (229)
T d1ixva_         164 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY-------DLVDNKGAKAEDVALNEQVKKFFLNNVV  227 (229)
T ss_dssp             CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS-------CCCCTTSCCTGGGCSCHHHHHHHHHHCC
T ss_pred             cccccccccCCchhhhcccccHHHHHHHHHhcCCCC-------CCcCCCCCCHHHHHhhHHHHHHHHHcCC
Confidence            889999999999999999999999999996 59998       799999999999995  88999999753

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.2e-23  Score=135.95  Aligned_cols=95  Identities=33%  Similarity=0.471  Sum_probs=63.9

Q ss_pred             CcchhHHHHHHHHc---CCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHH
Q 030904           34 TPPHLRDLAAAAQL---GDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHD  110 (169)
Q Consensus        34 ~~~~~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~  110 (169)
                      +..|.||||+|+..   +..+++++|++. |++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~  120 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI  120 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHHHHHHc-CCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHH
Confidence            44556677766653   456666776666 66666666667777777777777777777777777777667777777777


Q ss_pred             HHhcChHHHHHHHHhcCCC
Q 030904          111 ACAGGFIEIVQLLINSASG  129 (169)
Q Consensus       111 a~~~~~~~~~~~ll~~~~~  129 (169)
                      |++.|+.+++++|++.+..
T Consensus       121 A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         121 AKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHhCCC
Confidence            7777777777766665544

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.2e-23  Score=146.05  Aligned_cols=89  Identities=26%  Similarity=0.258  Sum_probs=42.8

Q ss_pred             cchhHHHHHHHHcCCHHHHHHHHHhCCCC---CcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHH
Q 030904           35 PPHLRDLAAAAQLGDVHSLRLALDNLSGS---IDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDA  111 (169)
Q Consensus        35 ~~~~t~l~~a~~~g~~~~~~~ll~~~~~~---~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a  111 (169)
                      ..|.||||+||..|+.+++++|++. +++   ++.++..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|
T Consensus         7 ~~G~t~Lh~A~~~~~~~~v~~Ll~~-~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A   85 (255)
T d1oy3d_           7 EDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA   85 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhh
Confidence            3444455555555555555554444 333   333444444555555555555555555555555544444455555555


Q ss_pred             HhcChHHHHHHHH
Q 030904          112 CAGGFIEIVQLLI  124 (169)
Q Consensus       112 ~~~~~~~~~~~ll  124 (169)
                      +..++.+++++|+
T Consensus        86 ~~~~~~~~~~~Ll   98 (255)
T d1oy3d_          86 CRVRAHTCACVLL   98 (255)
T ss_dssp             TTTTCHHHHHHHS
T ss_pred             hccCchHHHHHHH
Confidence            5544444444444

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=8.3e-23  Score=143.01  Aligned_cols=134  Identities=22%  Similarity=0.286  Sum_probs=105.7

Q ss_pred             HHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHh----------------
Q 030904           17 DNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCL----------------   80 (169)
Q Consensus        17 ~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~----------------   80 (169)
                      ..+.+++.|+++|.  .+..|.||||+|+..|+.+++++|++. |++++.++..|.||++++..                
T Consensus        56 ~~~~~l~~Gadvn~--~d~~G~TpLh~A~~~g~~~iv~~Ll~~-Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~  132 (277)
T d2fo1e1          56 EAKECIAAGADVNA--MDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKL  132 (277)
T ss_dssp             HHHHHHHTCCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHH
T ss_pred             chhHHHHcCCCccc--cCCCCCeeecccccccccccccccccc-ccccccccccccccccchhhhcchhhhhhhhhcccc
Confidence            34455677888875  456888999999999999999999998 88888766666555555554                


Q ss_pred             ----------------------------------------------------------------cCCHHHHHHHH-HcCC
Q 030904           81 ----------------------------------------------------------------YGYLPCVQLLL-ERGA   95 (169)
Q Consensus        81 ----------------------------------------------------------------~~~~~~~~~ll-~~g~   95 (169)
                                                                                      .++.+++++++ ..+.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~  212 (277)
T d2fo1e1         133 KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS  212 (277)
T ss_dssp             HHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC
T ss_pred             cccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccc
Confidence                                                                            44444444433 3466


Q ss_pred             CCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh
Q 030904           96 SLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM  160 (169)
Q Consensus        96 ~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~  160 (169)
                      +.+.+|..|.||||+|++.|+.+++++|+++|+++       +.+|.+|+||||+|+     +++++|++
T Consensus       213 ~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadi-------n~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         213 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-------EAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-------SCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-------CCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            77778888999999999999999999999999997       789999999999995     88888874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.5e-22  Score=130.81  Aligned_cols=117  Identities=25%  Similarity=0.359  Sum_probs=105.2

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHhCCCCCccc------CCCCCcHHHHHHhc---CCHHHHHHHHHcCCCCCccCCCCCCh
Q 030904           37 HLRDLAAAAQLGDVHSLRLALDNLSGSIDEP------VEDGDTALHLTCLY---GYLPCVQLLLERGASLEAKDEDGAIP  107 (169)
Q Consensus        37 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~------~~~g~~~L~~a~~~---~~~~~~~~ll~~g~~~~~~~~~~~t~  107 (169)
                      ....|..|+..++...+..++.. |.+++.+      +..|+||||+|+..   ++.+++++|+++|++++.+|..|+||
T Consensus         6 ~l~~L~~Av~~~dl~~l~~~~~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~Tp   84 (154)
T d1dcqa1           6 KLHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA   84 (154)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHc-CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccc
Confidence            44679999999999999999987 7766544      67799999999974   57789999999999999999999999


Q ss_pred             HHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904          108 LHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus       108 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      ||+|+..|+.+++++|+++|+++       +.+|..|+||||+|+     +++++|++.
T Consensus        85 Lh~A~~~~~~~~v~~Ll~~gad~-------~~~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          85 LHYCCLTDNAECLKLLLRGKASI-------EIANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccccccccccccccccCccc-------cccCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999999999999998       899999999999995     899999983

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-22  Score=148.49  Aligned_cols=136  Identities=27%  Similarity=0.378  Sum_probs=121.2

Q ss_pred             hHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 030904           14 SEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLER   93 (169)
Q Consensus        14 ~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~   93 (169)
                      ...+++.+...+...+..  +..+.+|++.++..++.+++++|++. |++++..+..+.||||.++..++..+++++++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~--~~~g~~~l~~a~~~~~~~i~~~Ll~~-g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~  319 (408)
T d1n11a_         243 HAEMVALLLSKQANGNLG--NKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH  319 (408)
T ss_dssp             CHHHHHHHHTTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT
T ss_pred             cHhHhhhhhccccccccc--cCCCCChhhhhhhcCcHHHHHHHHHC-CCccccccccccccchhhcccCcceeeeeeccc
Confidence            344566777766666543  45677999999999999999999998 999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhh
Q 030904           94 GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFI  159 (169)
Q Consensus        94 g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li  159 (169)
                      |++++.+|..|.||||+|++.|+.+++++|+++|+++       +.+|.+|.||||+|+     +++++|.
T Consensus       320 g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~-------n~~d~~G~t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         320 QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-------NEVSSDGTTPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-------CCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999998       899999999999994     6666553

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1e-22  Score=145.04  Aligned_cols=119  Identities=15%  Similarity=0.130  Sum_probs=87.9

Q ss_pred             CCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCC-------HHHHHHHH------
Q 030904           25 GVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGY-------LPCVQLLL------   91 (169)
Q Consensus        25 g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~-------~~~~~~ll------   91 (169)
                      +.++|.. .+..|.||||+||..|+.+++++|++. |++++.+|..|+||||.|+..++       .++++++.      
T Consensus        96 ~~dvn~~-~D~~G~T~LH~Aa~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~  173 (301)
T d1sw6a_          96 QLNLNIP-VDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE  173 (301)
T ss_dssp             CCCSCSC-CSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred             CCCcCcC-cCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhc
Confidence            4444432 256788999999999999999999988 99999999999999999997553       12222221      


Q ss_pred             ------------------------------------HcCC-------------------------------------CCC
Q 030904           92 ------------------------------------ERGA-------------------------------------SLE   98 (169)
Q Consensus        92 ------------------------------------~~g~-------------------------------------~~~   98 (169)
                                                          ..+.                                     .++
T Consensus       174 d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in  253 (301)
T d1sw6a_         174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN  253 (301)
T ss_dssp             CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTT
T ss_pred             ccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCcc
Confidence                                                1111                                     146


Q ss_pred             ccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh
Q 030904           99 AKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN  152 (169)
Q Consensus        99 ~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~  152 (169)
                      .+|..|+||||+|++.|+.+++++|+++|+++       +.+|..|.|||++|+
T Consensus       254 ~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~-------~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         254 AQDSNGDTCLNIAARLGNISIVDALLDYGADP-------FIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT-------TCCCTTSCCGGGGTC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------CCCCCCCCCHHHHcC
Confidence            66777778888888888888888888877777       677777888877764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.5e-22  Score=130.01  Aligned_cols=121  Identities=26%  Similarity=0.390  Sum_probs=111.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHH
Q 030904           39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE  118 (169)
Q Consensus        39 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~  118 (169)
                      ..|+.||..|+.+.++.|++..+++++.+|..|+||||+|+ .++.+++++|++.+.+++..+..|.+|++.++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            45999999999999999999878899999999999999986 58889999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhccccccC
Q 030904          119 IVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQEVNTW  167 (169)
Q Consensus       119 ~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~~~~~~  167 (169)
                      +++.++++|+++       +.+|..|.||||+|+     +++++|+.+++++..
T Consensus        83 ~~~~~l~~~~~~-------n~~~~~~~t~L~~A~~~~~~~i~~~L~~~~~~~~~  129 (156)
T d1bd8a_          83 TLKVLVEHGADV-------NVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRR  129 (156)
T ss_dssp             HHHHHHHTTCCS-------CCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTCC
T ss_pred             cccccccccccc-------ccccCCCCeeecccccccccccccccccccccccc
Confidence            999999999987       789999999999995     999999987776653

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=8e-23  Score=139.33  Aligned_cols=134  Identities=21%  Similarity=0.229  Sum_probs=91.5

Q ss_pred             HHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHH------------------
Q 030904           18 NALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTC------------------   79 (169)
Q Consensus        18 ~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~------------------   79 (169)
                      ++.+...|.+++..  +..|.||||+|+..|+.+++++|++. |++++.++..|.+||++++                  
T Consensus        22 i~~~~~~~~~in~~--d~~g~TpLh~A~~~~~~~iv~~L~~~-g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~   98 (221)
T d1iknd_          22 IRQVKGDLAFLNFQ--NNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP   98 (221)
T ss_dssp             CC-----CCCCCCC--CTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTT
T ss_pred             HHHHHhCCCCcccC--CCCCCccccccccccccccccccccc-cccccccccccccccccccccccccccchhhhhcccc
Confidence            34444445555433  33555666666666666666666655 5666555555555555544                  


Q ss_pred             ---------------------hcCCHHHHHHHHHcCCCCCccC-CCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhh
Q 030904           80 ---------------------LYGYLPCVQLLLERGASLEAKD-EDGAIPLHDACAGGFIEIVQLLINSASGTECVKRML  137 (169)
Q Consensus        80 ---------------------~~~~~~~~~~ll~~g~~~~~~~-~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~  137 (169)
                                           ..++.+++.+++..|+.++..+ .+|.||||+|++.|+.+++++|+++|+++       
T Consensus        99 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~-------  171 (221)
T d1iknd_          99 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-------  171 (221)
T ss_dssp             SSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-------
T ss_pred             cccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcc-------
Confidence                                 4455555566666666666544 57999999999999999999999999998       


Q ss_pred             hcccCCCCCcccchh-----hHHHHhhhc
Q 030904          138 ETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus       138 ~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      +.+|.+|+||||+|+     +++++|++.
T Consensus       172 ~~~~~~G~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         172 NRVTYQGYSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             CCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            799999999999994     888888774

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.7e-22  Score=130.52  Aligned_cols=117  Identities=28%  Similarity=0.397  Sum_probs=109.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHH
Q 030904           39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE  118 (169)
Q Consensus        39 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~  118 (169)
                      ++||+||..|+.+++++|+++ |++++.+|..|.||||+|+ .++.+++++|+++|++++..+..+.++++.++..++..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~-g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            799999999999999999998 9999999999999999886 78999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcccc
Q 030904          119 IVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQEV  164 (169)
Q Consensus       119 ~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~~~  164 (169)
                      .++.+++.+.+.       +..+..|.+|++.|+     +++++|++++..
T Consensus        81 ~~~~l~~~~~~~-------~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~  124 (156)
T d1ihba_          81 TLQTLLEFQADV-------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS  124 (156)
T ss_dssp             HHHHHHHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             cccccccccccc-------cccccccccccccccccccccccccccccccc
Confidence            999999999887       788999999999984     999999997753

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.6e-23  Score=128.90  Aligned_cols=110  Identities=19%  Similarity=0.217  Sum_probs=98.1

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCC-cHHHHHHhcCCHHHHHHH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGD-TALHLTCLYGYLPCVQLL   90 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~-~~L~~a~~~~~~~~~~~l   90 (169)
                      .+..++++++++.|++++..  +..|.||+|.| ..|+.+++++|++. |++++.++..+. +|||+|+..|+.+++++|
T Consensus        13 ~G~~~~v~~Ll~~gad~n~~--~~~g~t~l~~a-~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~L   88 (125)
T d1bi7b_          13 RGRVEEVRALLEAGANPNAP--NSYGRRPIQVM-MMGSARVAELLLLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVL   88 (125)
T ss_dssp             HTCHHHHHHHHTTTCCTTCC--CSSSCCTTTSS-CTTCHHHHHHHHTT-TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCccccc--ccccccccccc-cccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            34567888899999988754  55778999966 57999999999998 999999988775 699999999999999999


Q ss_pred             HHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHh
Q 030904           91 LERGASLEAKDEDGAIPLHDACAGGFIEIVQLLIN  125 (169)
Q Consensus        91 l~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~  125 (169)
                      +++|++++.+|..|+||||+|+++|+.+++++|++
T Consensus        89 l~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          89 HRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999999999999999999999875

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1e-21  Score=134.12  Aligned_cols=146  Identities=21%  Similarity=0.233  Sum_probs=113.4

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCccc---CCC------------------
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEP---VED------------------   70 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~---~~~------------------   70 (169)
                      ++.+.+..++...+..++  ..+..|.||||+|+..|+.+++++|++. +++++..   +..                  
T Consensus        11 g~~~~v~~Ll~~~~~~~~--~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (229)
T d1ixva_          11 NEFFKVQELLHSKPSLLL--QKDQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDYPDDSGWTPFHIACSVGNLEVVK   87 (229)
T ss_dssp             TCHHHHHHHHHHCGGGTT--CCCTTSCCHHHHHHHTTCHHHHHHHHTT-CTTCCGGGCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             CCHHHHHHHHHcCCCccc--ccCCCCCCHHHHHHHcCCccccchhhhh-hcccccccccccccccccccccccccccccc
Confidence            344455555555555544  4566888999999999999999999987 7766532   223                  


Q ss_pred             -----------------CCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhh
Q 030904           71 -----------------GDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECV  133 (169)
Q Consensus        71 -----------------g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~  133 (169)
                                       +.++++.++..++.+++++|+..|...+.++..|+||||+|+..|+.++++.|++.+...   
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~---  164 (229)
T d1ixva_          88 SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA---  164 (229)
T ss_dssp             HHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCC---
T ss_pred             ccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccccccc---
Confidence                             456666666667778888888888888888999999999999999999999999987544   


Q ss_pred             hhhhhcccCCCCCcccchh-----hHHHHhhhcc--cccc
Q 030904          134 KRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ--EVNT  166 (169)
Q Consensus       134 ~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~--~~~~  166 (169)
                         ++.+|..|+||||+|+     +++++||++.  +++.
T Consensus       165 ---in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~  201 (229)
T d1ixva_         165 ---VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL  201 (229)
T ss_dssp             ---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC
T ss_pred             ---ccccccccCCchhhhcccccHHHHHHHHHhcCCCCCC
Confidence               4889999999999995     9999999853  4444

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.3e-21  Score=136.04  Aligned_cols=127  Identities=23%  Similarity=0.280  Sum_probs=111.3

Q ss_pred             CcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcC----CHHHHHHHHHcCCCCCccCCCCCChHH
Q 030904           34 TPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYG----YLPCVQLLLERGASLEAKDEDGAIPLH  109 (169)
Q Consensus        34 ~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~----~~~~~~~ll~~g~~~~~~~~~~~t~l~  109 (169)
                      ...+.||||+|+..|+.+++++|++..+++++.++..|.+++..+...+    ...++++|+++|++++.++..|.||||
T Consensus       145 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~  224 (285)
T d1wdya_         145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI  224 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             cccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccc
Confidence            3457789999999999999999998878999999999999887665433    346899999999999999999999999


Q ss_pred             HHHhcChHHHHHHHHh-cCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhh-ccccccC
Q 030904          110 DACAGGFIEIVQLLIN-SASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIM-QQEVNTW  167 (169)
Q Consensus       110 ~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~-~~~~~~~  167 (169)
                      +|++.|+.+++++|++ .|+++       +.+|.+|.||||+|+     +++++||+ ++++|.+
T Consensus       225 ~a~~~~~~~~v~~lL~~~g~di-------n~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         225 LAVEKKHLGLVQRLLEQEHIEI-------NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             HHHHTTCHHHHHHHHHSSSCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             hhhhcCcHHHHHHHHHcCCCCC-------cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc
Confidence            9999999999999997 47787       899999999999995     99999999 5666653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.6e-22  Score=124.72  Aligned_cols=111  Identities=16%  Similarity=0.160  Sum_probs=98.1

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      +..++++.+++.|++++..  +..|+||||+|+..|+.+++++|++. +++++.+|..|+||||+|+.+|+.+++++|++
T Consensus        12 G~~~~v~~Ll~~g~d~n~~--d~~g~t~Lh~A~~~~~~~~~~~ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~   88 (130)
T d1ycsb1          12 GEFDLVQRIIYEVDDPSLP--NDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVE   88 (130)
T ss_dssp             TCHHHHHHHTSTTSSCCCC--CTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCcccc--cccccccccccccccccccccccccc-ccccccccccCcccccccchhhHHHHHHHHHH
Confidence            3456888999999998755  55788999999999999999999998 99999999999999999999999999999999


Q ss_pred             cCCCCCccCC-CCCChHHHH--HhcChHHHHHHHHhc
Q 030904           93 RGASLEAKDE-DGAIPLHDA--CAGGFIEIVQLLINS  126 (169)
Q Consensus        93 ~g~~~~~~~~-~~~t~l~~a--~~~~~~~~~~~ll~~  126 (169)
                      +|++++..+. .+.|+++.+  ...|+.+++++|++.
T Consensus        89 ~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          89 SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             cCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            9999997764 588887665  578899999999864

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.2e-21  Score=128.97  Aligned_cols=132  Identities=23%  Similarity=0.277  Sum_probs=108.8

Q ss_pred             HHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCccc------------------------------
Q 030904           18 NALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEP------------------------------   67 (169)
Q Consensus        18 ~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~------------------------------   67 (169)
                      ++.+.+.|++++..  +..|.||||+|+..|+.++++.|++. +++.+..                              
T Consensus        23 l~~~~~~g~~in~~--d~~g~TpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   99 (228)
T d1k1aa_          23 VNLFQQGGRELDIY--NNLRQTPLHLAVITTLPSVVRLLVTA-GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPG   99 (228)
T ss_dssp             HHHHHHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred             HHHHHHCCCCCCcc--CCCCCccceehhcccccccccccccc-cccccccccccccccccccccccccchhhhhhccccc
Confidence            33344678887654  55788999999999999999999987 6655431                              


Q ss_pred             -----------------------------------------CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCC
Q 030904           68 -----------------------------------------VEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAI  106 (169)
Q Consensus        68 -----------------------------------------~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t  106 (169)
                                                               ...+.++++.|+..+...++++++..|..++.+|..|.|
T Consensus       100 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t  179 (228)
T d1k1aa_         100 TLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSS  179 (228)
T ss_dssp             SCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCB
T ss_pred             cccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcc
Confidence                                                     123578888888888889999999999999999999999


Q ss_pred             hHHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchhhHHHHhh
Q 030904          107 PLHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQNDLVSLFI  159 (169)
Q Consensus       107 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~~~~~~li  159 (169)
                      |||+|+..|+.+++++|+++|+++       +.+|.+|+||||+|++-...-|
T Consensus       180 ~L~~A~~~g~~~~v~~Ll~~Gad~-------n~~d~~G~TpL~~A~~~~~~di  225 (228)
T d1k1aa_         180 ALHSASGRGLLPLVRTLVRSGADS-------SLKNCHNDTPLMVARSRRVIDI  225 (228)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCT-------TCCCTTSCCTTTTCSSHHHHHH
T ss_pred             hHHHHHHcCCHHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHhCCCccc
Confidence            999999999999999999999998       7999999999999974444333

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.85  E-value=1.8e-23  Score=151.69  Aligned_cols=125  Identities=12%  Similarity=0.007  Sum_probs=103.3

Q ss_pred             CCcchhHHHHHHHHcCCHHHHHH---HHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccC--CCCCCh
Q 030904           33 ETPPHLRDLAAAAQLGDVHSLRL---ALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKD--EDGAIP  107 (169)
Q Consensus        33 ~~~~~~t~l~~a~~~g~~~~~~~---ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~--~~~~t~  107 (169)
                      ++..+.|||++||..|+.+.+++   |++. +++++.++..|+||||+|+..|+.+++++|++.|++++..+  .+|+||
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~-~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~  164 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTS-DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA  164 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--C-CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHH
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhC-CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCCh
Confidence            35578899999999999888776   4555 99999999999999999999999999999999999998765  468999


Q ss_pred             HHHHHhcChHHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          108 LHDACAGGFIEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       108 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      ||+|+++|+.+++++|++.|.....    .+.++..+.||++.|+     +++++|++.|
T Consensus       165 L~~Aa~~g~~~iv~~Ll~~~~~~~~----~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~g  220 (346)
T d2ajaa1         165 FRLAAENGHLHVLNRLCELAPTEAT----AMIQAENYYAFRWAAVGRGHHNVINFLLDCP  220 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHH----HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             hHHHHHHhhHHHHHHHHHcCCcccc----cccccCCCcchhhHHhhcCHHHHHHHHHhCC
Confidence            9999999999999999999876521    1445566778888774     8999999864

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.2e-20  Score=127.23  Aligned_cols=88  Identities=24%  Similarity=0.231  Sum_probs=73.7

Q ss_pred             chhHHHHHHHHcCCHHHHHHHHH---hCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHH
Q 030904           36 PHLRDLAAAAQLGDVHSLRLALD---NLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC  112 (169)
Q Consensus        36 ~~~t~l~~a~~~g~~~~~~~ll~---~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~  112 (169)
                      .|.||||+||..|+.++++.|++   ..|++++.+|..|+||||+|+..++.+++++|+++|++.+.....+.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            57899999999999999999875   348999999999999999999999999999999999988887766666666666


Q ss_pred             hcChHHHHHHH
Q 030904          113 AGGFIEIVQLL  123 (169)
Q Consensus       113 ~~~~~~~~~~l  123 (169)
                      ..++.++++.+
T Consensus        82 ~~~~~~~~~~~   92 (228)
T d1k1aa_          82 EHRSPTCLRAL   92 (228)
T ss_dssp             HTTCHHHHHHH
T ss_pred             ccccccchhhh
Confidence            55555554443

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=1.7e-22  Score=125.03  Aligned_cols=99  Identities=23%  Similarity=0.316  Sum_probs=89.7

Q ss_pred             CChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHH
Q 030904           12 DDSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLL   91 (169)
Q Consensus        12 ~~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll   91 (169)
                      .+..++++.+++.|++++..  +..|.||||+|+..|+.++++++++. |++++.++..|+||||+|+..++.+++++|+
T Consensus        12 ~g~~~~v~~Ll~~g~d~n~~--~~~g~t~lh~A~~~~~~~~~~~ll~~-g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll   88 (118)
T d1myoa_          12 NGDLDEVKDYVAKGEDVNRT--LEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGHVSCVKLLL   88 (118)
T ss_dssp             TTCHHHHHHHHTTTCCCCCC--SSSSCCTTHHHHHHSTTTHHHHHHHS-SCTTTCCSSSCSCHHHHHHTTTCCHHHHHHH
T ss_pred             CCCHHHHHHHHHhhhccccc--cccccccccccccccccccccccccc-cceeeecccccccchhhhhhcCchhhhhhhh
Confidence            34567888888999888754  55788999999999999999999998 9999999999999999999999999999999


Q ss_pred             HcCCCCCccCCCCCChHHHHHh
Q 030904           92 ERGASLEAKDEDGAIPLHDACA  113 (169)
Q Consensus        92 ~~g~~~~~~~~~~~t~l~~a~~  113 (169)
                      ++|++++.+|..|.||||+|..
T Consensus        89 ~~Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          89 SKGADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             TTCCCSSSSSSSTCCCCCTCSS
T ss_pred             cccccceeeCCCCCCHHHHHhH
Confidence            9999999999999999998843

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=5.3e-20  Score=118.23  Aligned_cols=115  Identities=26%  Similarity=0.385  Sum_probs=106.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcChHH
Q 030904           39 RDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGFIE  118 (169)
Q Consensus        39 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~~~  118 (169)
                      |||+.||..|+.+++++||++ |++++ .+..|.||||+|+..++.+++.+++.........+..+.++++.++...+.+
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~-ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHc-CCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            899999999999999999998 88876 6899999999999999999999999988877777888899999999999999


Q ss_pred             HHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhcc
Q 030904          119 IVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       119 ~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      +++++.+.+.+.       +.++.+|.||||+|+     +++++|++.|
T Consensus        82 ~~~~l~~~~~~~-------~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g  123 (153)
T d1awcb_          82 IVEVLLKHGADV-------NAKDMLKMTALHWATEHNHQEVVELLIKYG  123 (153)
T ss_dssp             HHHHHHTTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             eeecccccCCcc-------ccccccCchHHHhhhhcchhheeeeccccc
Confidence            999999999987       788999999999995     9999999853

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.5e-20  Score=133.82  Aligned_cols=140  Identities=22%  Similarity=0.281  Sum_probs=106.9

Q ss_pred             ChHHHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 030904           13 DSEEDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLE   92 (169)
Q Consensus        13 ~~~~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~   92 (169)
                      +...+++.|++.|++++..  +..|.||||+|+..|+.+++++|+++ |++++.++..|.||||+|+..|+.+++++|+.
T Consensus        11 g~~~~v~~Ll~~g~~in~~--d~~g~TpL~~A~~~g~~~iv~~Ll~~-gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~   87 (408)
T d1n11a_          11 GHLPIVKNLLQRGASPNVS--NVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE   87 (408)
T ss_dssp             TCHHHHHHHHHTTCCSCCS--SSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            3566778888888887654  55678899999999999999999988 88888888889999999888888888777765


Q ss_pred             cCCC---------------------------------CCccCCCCCChHHHHHhcChHHHHHHHHhcCCCchhhhhhhhc
Q 030904           93 RGAS---------------------------------LEAKDEDGAIPLHDACAGGFIEIVQLLINSASGTECVKRMLET  139 (169)
Q Consensus        93 ~g~~---------------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~  139 (169)
                      .+.+                                 ....+..+.++++.++..++.++++.|+++|.++       +.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~-------~~  160 (408)
T d1n11a_          88 NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-------NA  160 (408)
T ss_dssp             HTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------TC
T ss_pred             hhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCC-------Cc
Confidence            4332                                 2334456667777777777777777777777776       67


Q ss_pred             ccCCCCCcccchh-----hHHHHhhhcc
Q 030904          140 VDAEGDTDCDDQN-----DLVSLFIMQQ  162 (169)
Q Consensus       140 ~~~~g~tpl~~A~-----~~~~~li~~~  162 (169)
                      .+..|.+||+.|+     +++++|+.+|
T Consensus       161 ~~~~~~~~L~~A~~~~~~~~~~~Ll~~g  188 (408)
T d1n11a_         161 AGKNGLTPLHVAVHHNNLDIVKLLLPRG  188 (408)
T ss_dssp             CCSSCCCHHHHHHHTTCHHHHHHHGGGT
T ss_pred             CCCcCchHHHHHHHcCCHHHHHHHHhcC
Confidence            7777888888874     6777777753

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.7e-21  Score=132.61  Aligned_cols=128  Identities=25%  Similarity=0.257  Sum_probs=100.8

Q ss_pred             hhHHHHHHHHcCCHHHH----HHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHH
Q 030904           37 HLRDLAAAAQLGDVHSL----RLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDAC  112 (169)
Q Consensus        37 ~~t~l~~a~~~g~~~~~----~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~  112 (169)
                      |.||||+|+..|+.+.+    +++... ++++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|.|||+.++
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~-~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGD-LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhC-CCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            67999999999986444    444555 8899999999999999999999999999999999999999999999999999


Q ss_pred             hcChHHHHHHHHhcCCCch--------------------------hhhhh------hh-cccCCCCCcccchh-----hH
Q 030904          113 AGGFIEIVQLLINSASGTE--------------------------CVKRM------LE-TVDAEGDTDCDDQN-----DL  154 (169)
Q Consensus       113 ~~~~~~~~~~ll~~~~~~~--------------------------~~~~~------~~-~~~~~g~tpl~~A~-----~~  154 (169)
                      ..++.++++.+++.+....                          ....+      ++ ..+.+|.||||.|+     ++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            9999999999988765431                          00000      12 24567999999995     89


Q ss_pred             HHHhhhc-cccc
Q 030904          155 VSLFIMQ-QEVN  165 (169)
Q Consensus       155 ~~~li~~-~~~~  165 (169)
                      +++|++. .+++
T Consensus       161 v~~Ll~~gad~~  172 (221)
T d1iknd_         161 VSLLLKCGADVN  172 (221)
T ss_dssp             HHHHHTTTCCSC
T ss_pred             HHHHHhcCCccc
Confidence            9999984 3443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.82  E-value=5.1e-19  Score=124.51  Aligned_cols=117  Identities=31%  Similarity=0.480  Sum_probs=108.1

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcCh
Q 030904           37 HLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGF  116 (169)
Q Consensus        37 ~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~  116 (169)
                      +.|+|+.||..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++....+..+.+||+.++..++
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~-Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CchHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccc
Confidence            56999999999999999999998 99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCchhhhhhhhcccCCCCCcccchh-----hHHHHhhhc
Q 030904          117 IEIVQLLINSASGTECVKRMLETVDAEGDTDCDDQN-----DLVSLFIMQ  161 (169)
Q Consensus       117 ~~~~~~ll~~~~~~~~~~~~~~~~~~~g~tpl~~A~-----~~~~~li~~  161 (169)
                      .++++.|++.|...       +.++..+.+|+++|.     +.+..++..
T Consensus       119 ~~~~~~l~~~~~~~-------~~~~~~~~~~~~~a~~~~~~~~~~~ll~~  161 (291)
T d1s70b_         119 LDIAEYLISQGAHV-------GAVNSEGDTPLDIAEEEAMEELLQNEVNR  161 (291)
T ss_dssp             HHHHHHHHHTTCCT-------TCCCTTSCCHHHHCCSHHHHHHHHHHHHH
T ss_pred             cchhhcccccCccc-------ccccccCccccccccccccchhccccccc
Confidence            99999999999887       688999999999984     666666653

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=3e-19  Score=120.06  Aligned_cols=105  Identities=19%  Similarity=0.177  Sum_probs=95.1

Q ss_pred             HHHHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Q 030904           16 EDNALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGA   95 (169)
Q Consensus        16 ~~~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~   95 (169)
                      ...+.+...+.+++..  +..+.|||++++..+...+++.++.. +.+++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       104 ~~~~~L~~~~~~~~~~--~~~~~t~l~~~~~~~~~~~~~~l~~~-~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga  180 (209)
T d1ot8a_         104 GMVEDLITADADINAA--DNSGKTALHWAAAVNNTEAVNILLMH-HANRDAQDDKDETPLFLAAREGSYEASKALLDNFA  180 (209)
T ss_dssp             THHHHHHHTTCCTTCB--CTTSCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             hhhhhhhhhccccccc--CCCCCCcchhhcccCcceeeeeeccc-cccccccccccccccchhccccHHHHHHHHHHCCC
Confidence            3566677777777654  55677999999999999999999988 88999999999999999999999999999999999


Q ss_pred             CCCccCCCCCChHHHHHhcChHHHHHHH
Q 030904           96 SLEAKDEDGAIPLHDACAGGFIEIVQLL  123 (169)
Q Consensus        96 ~~~~~~~~~~t~l~~a~~~~~~~~~~~l  123 (169)
                      +++.+|..|+||||+|++.|+.+++++|
T Consensus       181 d~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         181 NREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999999999976

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.5e-18  Score=118.59  Aligned_cols=112  Identities=25%  Similarity=0.197  Sum_probs=91.4

Q ss_pred             HHHHHHH-hcCCCCcccCCCcchhHHHHHHHH---c-CCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHH
Q 030904           16 EDNALFE-EDGVNMDLESETPPHLRDLAAAAQ---L-GDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLL   90 (169)
Q Consensus        16 ~~~~~l~-~~g~~~~~~~~~~~~~t~l~~a~~---~-g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~l   90 (169)
                      .++++|+ ..|++++...  ..+.++++.+..   . +..+++++|++. |++++.++..|.||||+|+..++.+++++|
T Consensus       162 ~~~~~Ll~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~Li~~-ga~~n~~~~~g~t~L~~a~~~~~~~~v~~l  238 (285)
T d1wdya_         162 EVLKILLDEMGADVNACD--NMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRL  238 (285)
T ss_dssp             HHHHHHHHTSCCCTTCCC--TTSCCHHHHHHHCSCTTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhccCCCccccc--CCCCcccccccccccchHHHHHHHHHHHC-CCCCCccCCCCCCccchhhhcCcHHHHHHH
Confidence            3455555 5577776543  344344444333   2 335688899988 999999999999999999999999999999


Q ss_pred             HHc-CCCCCccCCCCCChHHHHHhcChHHHHHHHHhcCCCc
Q 030904           91 LER-GASLEAKDEDGAIPLHDACAGGFIEIVQLLINSASGT  130 (169)
Q Consensus        91 l~~-g~~~~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~  130 (169)
                      ++. |++++.+|.+|.||||+|++.|+.+++++|+++|+++
T Consensus       239 L~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~  279 (285)
T d1wdya_         239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             HHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred             HHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            985 8999999999999999999999999999999999998

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.76  E-value=1e-20  Score=136.96  Aligned_cols=110  Identities=15%  Similarity=0.116  Sum_probs=91.2

Q ss_pred             HHHHHhcCCCCcccCCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccC--CCCCcHHHHHHhcCCHHHHHHHHHcCC
Q 030904           18 NALFEEDGVNMDLESETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPV--EDGDTALHLTCLYGYLPCVQLLLERGA   95 (169)
Q Consensus        18 ~~~l~~~g~~~~~~~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~--~~g~~~L~~a~~~~~~~~~~~ll~~g~   95 (169)
                      ++++.+.|++++.  .+..|+||||+||..|+.+++++|++. |++++..+  ..|+||||+|+..|+.+++++|++.|+
T Consensus       109 ~~~L~~~~~~in~--~~~~g~taL~~Aa~~G~~~~v~~Ll~~-g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~  185 (346)
T d2ajaa1         109 LCLLLTSDEIVKV--IQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP  185 (346)
T ss_dssp             HTTC--CCSSCC----CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCG
T ss_pred             HHHHHhCCCcccc--cCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCC
Confidence            3446777877764  467899999999999999999999998 88888765  458999999999999999999999987


Q ss_pred             CC---CccCCCCCChHHHHHhcChHHHHHHHHhcCCCc
Q 030904           96 SL---EAKDEDGAIPLHDACAGGFIEIVQLLINSASGT  130 (169)
Q Consensus        96 ~~---~~~~~~~~t~l~~a~~~~~~~~~~~ll~~~~~~  130 (169)
                      +.   +..+.++.||++.|+++|+.+++++|++.|+++
T Consensus       186 ~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         186 TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML  223 (346)
T ss_dssp             GGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHH
T ss_pred             cccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCc
Confidence            64   334456778889999999999999999998776

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.75  E-value=4.2e-18  Score=118.71  Aligned_cols=95  Identities=26%  Similarity=0.295  Sum_probs=88.4

Q ss_pred             CCCcchhHHHHHHHHcCCHHHHHHHHHhCCCCCcccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHH
Q 030904           32 SETPPHLRDLAAAAQLGDVHSLRLALDNLSGSIDEPVEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDA  111 (169)
Q Consensus        32 ~~~~~~~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a  111 (169)
                      ..+..+.|+||+++..++.+.+++++...+.+.+.++..|.||||+|+..|+.+++++|++.|++++.+|.+|.||||+|
T Consensus       182 ~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A  261 (277)
T d2fo1e1         182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA  261 (277)
T ss_dssp             SSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHH
T ss_pred             ccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHH
Confidence            34557889999999999999999988777889999999999999999999999999999999999999999999999999


Q ss_pred             HhcChHHHHHHHHhc
Q 030904          112 CAGGFIEIVQLLINS  126 (169)
Q Consensus       112 ~~~~~~~~~~~ll~~  126 (169)
                      ++.|+.+++++|+++
T Consensus       262 ~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         262 QANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHTTCHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHh
Confidence            999999999999864

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=1.3e-16  Score=113.05  Aligned_cols=56  Identities=25%  Similarity=0.233  Sum_probs=51.8

Q ss_pred             CCCCccc-CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCChHHHHHhcCh
Q 030904           61 SGSIDEP-VEDGDTALHLTCLYGYLPCVQLLLERGASLEAKDEDGAIPLHDACAGGF  116 (169)
Q Consensus        61 ~~~~~~~-~~~g~~~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~~t~l~~a~~~~~  116 (169)
                      +.++|.+ |..|+||||+|+..|+.+++++|+++|++++.+|..|+||||.|+..++
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~  152 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN  152 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSH
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhccc
Confidence            5677766 8899999999999999999999999999999999999999999998765