Citrus Sinensis ID: 030912

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcc
Coil and Loop (DISEMBL)
mkqpancleDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAqtkltpfgkVQKYVEKLEDFMALLAyeepekspmfHLLSLEYRQHVADNLNRAILERPRYAAMERLIQQTTAVRQCLSqelgkdvhppfslkdfmks
Flexible Loop (DISEMBL)
mkqpanclEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEfaqtkltpfgkVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILERPRYAAMERLIQQTTAVRQCLSqelgkdvhppfslkdfmks
Low Complexity Region (SEG)
MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS
Disordered region (IsUnstruct)
*************RKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILERPRYAAMERLIQQTTAVRQCLS*******************
Disordered Region (DISOPRED)
***PANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILE*****A**RLIQQTTAVRQCL******DVHPPFSLKDFMK*
Disordered Region (DISEMBL)
MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS
Disordered Region (DISPRO)
****ANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	169	2.2.26 [Sep-21-2011]
A7SWD3	225	Glucose-induced degradati	N/A	no	0.745	0.56	0.377	5e-16
Q5ZKQ7	228	Glucose-induced degradati	yes	no	0.745	0.552	0.370	2e-14
Q32L52	228	Glucose-induced degradati	yes	no	0.745	0.552	0.370	4e-14
Q9D7M1	228	Glucose-induced degradati	yes	no	0.745	0.552	0.370	5e-14
Q9NWU2	228	Glucose-induced degradati	yes	no	0.745	0.552	0.370	1e-13
Q6PC55	228	Glucose-induced degradati	yes	no	0.745	0.552	0.354	4e-13
Q54X16	228	Glucose-induced degradati	no	no	0.615	0.456	0.390	6e-12

>sp|A7SWD3|GID8_NEMVE Glucose-induced degradation protein 8 homolog OS=Nematostella vectensis GN=v1g247787 PE=3 SV=1

 Score = 84.0 bits (206), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 1/127 (0%)

Query: 3   QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
           QP   L+ ++ R +I     +G+  +A+ +T +L  D+L+ N+ L+F L     +EL+  
Sbjct: 53  QPTAPLDSLDDRIKIREAVQKGDLEQAVSMTNKLNPDILDSNQQLYFHLQQQRLIELIRE 112

Query: 63  RKCTEALEFAQTKLTPFGK-VQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
           +    A+EFAQ + +  G+   +Y+E+LE  MALLA++ PE+SP   LL    RQ VA  
Sbjct: 113 KDIEAAVEFAQGQFSEQGQESGRYLEELEQTMALLAFDNPEESPFGDLLHTSQRQKVASE 172

Query: 122 LNRAILE 128
           LN AILE
Sbjct: 173 LNAAILE 179

Nematostella vectensis (taxid: 45351)

>sp|Q5ZKQ7|GID8_CHICK Glucose-induced degradation protein 8 homolog OS=Gallus gallus GN=GID8 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 77/127 (60%), Gaps = 1/127 (0%)

Query: 3   QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
           +P+  LE ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct: 56  EPSVDLETLDERIKIREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQ 115

Query: 63  RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
           R+   ALEFAQT+L   G+  +  + ++E  +ALLA++ PE+SP   LL++  RQ V   
Sbjct: 116 RETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSE 175

Query: 122 LNRAILE 128
           +N+A+L+
Sbjct: 176 VNQAVLD 182

Gallus gallus (taxid: 9031)

>sp|Q32L52|GID8_BOVIN Glucose-induced degradation protein 8 homolog OS=Bos taurus GN=GID8 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 76/127 (59%), Gaps = 1/127 (0%)

Query: 3   QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
           +P+  LE ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct: 56  EPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQ 115

Query: 63  RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
           R+   ALEFAQT+L   G+  +  + ++E  +ALLA++ PE SP   LL++  RQ V   
Sbjct: 116 RETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSE 175

Query: 122 LNRAILE 128
           +N+A+L+
Sbjct: 176 VNQAVLD 182

Bos taurus (taxid: 9913)

>sp|Q9D7M1|GID8_MOUSE Glucose-induced degradation protein 8 homolog OS=Mus musculus GN=Gid8 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 76/127 (59%), Gaps = 1/127 (0%)

Query: 3   QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
           +P+  LE ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct: 56  EPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQ 115

Query: 63  RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
           R+   ALEFAQT+L   G+  +  + ++E  +ALLA++ PE+SP   LL +  RQ V   
Sbjct: 116 RETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSE 175

Query: 122 LNRAILE 128
           +N+A+L+
Sbjct: 176 VNQAVLD 182

Mus musculus (taxid: 10090)

>sp|Q9NWU2|GID8_HUMAN Glucose-induced degradation protein 8 homolog OS=Homo sapiens GN=GID8 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 75/127 (59%), Gaps = 1/127 (0%)

Query: 3   QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
           +P+  LE ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct: 56  EPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQ 115

Query: 63  RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
           R+   ALEFAQT+L   G+  +  + ++E  +ALLA++ PE+SP   LL    RQ V   
Sbjct: 116 RETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSE 175

Query: 122 LNRAILE 128
           +N+A+L+
Sbjct: 176 VNQAVLD 182

Homo sapiens (taxid: 9606)

>sp|Q6PC55|GID8_DANRE Glucose-induced degradation protein 8 homolog OS=Danio rerio GN=gid8 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 76/127 (59%), Gaps = 1/127 (0%)

Query: 3   QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
           +P   L+ ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct: 56  EPNVDLDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRL 115

Query: 63  RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
           R+   ALEFAQ++L   G+  +  + ++E  +ALLA++ PE+SP   LL++  RQ V   
Sbjct: 116 RETEAALEFAQSQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSE 175

Query: 122 LNRAILE 128
           +N+A+L+
Sbjct: 176 VNQAVLD 182

Danio rerio (taxid: 7955)

>sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2

 Score = 70.1 bits (170), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 61/105 (58%), Gaps = 1/105 (0%)

Query: 24  GNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFG-KV 82
           G+  K IE+  +L  ++L+ N  L+F L     +EL+      EAL+FAQ +L P G + 
Sbjct: 81  GDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQDELAPQGEEN 140

Query: 83  QKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAIL 127
            K++E+LE  ++LL +E+  KSP+  LL    RQ  A  LN AIL
Sbjct: 141 NKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAIL 185

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
225458141	216	PREDICTED: protein C20orf11 homolog [Vit	1.0	0.782	0.843	1e-75
302142570	215	unnamed protein product [Vitis vinifera]	1.0	0.786	0.843	1e-75
317106667	215	JHL18I08.4 [Jatropha curcas]	1.0	0.786	0.813	2e-74
356518435	215	PREDICTED: UPF0559 protein v1g247787-lik	0.988	0.776	0.817	5e-73
358248824	214	uncharacterized protein LOC100801338 [Gl	0.988	0.780	0.818	4e-72
224066094	215	predicted protein [Populus trichocarpa]	1.0	0.786	0.75	1e-66
222619339	833	hypothetical protein OsJ_03649 [Oryza sa	0.988	0.200	0.717	2e-65
218189143	833	hypothetical protein OsI_03937 [Oryza sa	0.988	0.200	0.717	2e-65
449460223	215	PREDICTED: glucose-induced degradation p	1.0	0.786	0.75	5e-65
224082928	215	predicted protein [Populus trichocarpa]	1.0	0.786	0.732	1e-63

>gi|225458141|ref|XP_002280458.1| PREDICTED: protein C20orf11 homolog [Vitis vinifera]

 Score =  287 bits (735), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 145/172 (84%), Positives = 153/172 (88%), Gaps = 3/172 (1%)

Query: 1   MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELV 60
           MKQPA+  EDME RKRI HFALEGNALKAIELTE+LA DLLEKNKDLHFDLLSLHFV+LV
Sbjct: 45  MKQPADYQEDMEKRKRIFHFALEGNALKAIELTEQLADDLLEKNKDLHFDLLSLHFVKLV 104

Query: 61  CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVAD 120
           CSRKCTEALEFAQTKLTPFGKVQ YVEKLEDFM LLAYEEPEKSPMFHLLSLEYRQ VAD
Sbjct: 105 CSRKCTEALEFAQTKLTPFGKVQNYVEKLEDFMTLLAYEEPEKSPMFHLLSLEYRQQVAD 164

Query: 121 NLNRAILER---PRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 169
           +LNRA+L     P  +AMERLIQQTT VRQCL+QEL KD  PPFSLKDF+KS
Sbjct: 165 SLNRALLAHANLPSCSAMERLIQQTTVVRQCLNQELSKDPPPPFSLKDFLKS 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142570|emb|CBI19773.3| unnamed protein product [Vitis vinifera]

 Score =  287 bits (734), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 145/172 (84%), Positives = 153/172 (88%), Gaps = 3/172 (1%)

Query: 1   MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELV 60
           MKQPA+  EDME RKRI HFALEGNALKAIELTE+LA DLLEKNKDLHFDLLSLHFV+LV
Sbjct: 44  MKQPADYQEDMEKRKRIFHFALEGNALKAIELTEQLADDLLEKNKDLHFDLLSLHFVKLV 103

Query: 61  CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVAD 120
           CSRKCTEALEFAQTKLTPFGKVQ YVEKLEDFM LLAYEEPEKSPMFHLLSLEYRQ VAD
Sbjct: 104 CSRKCTEALEFAQTKLTPFGKVQNYVEKLEDFMTLLAYEEPEKSPMFHLLSLEYRQQVAD 163

Query: 121 NLNRAILER---PRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 169
           +LNRA+L     P  +AMERLIQQTT VRQCL+QEL KD  PPFSLKDF+KS
Sbjct: 164 SLNRALLAHANLPSCSAMERLIQQTTVVRQCLNQELSKDPPPPFSLKDFLKS 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106667|dbj|BAJ53170.1| JHL18I08.4 [Jatropha curcas]

 Score =  283 bits (724), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 140/172 (81%), Positives = 150/172 (87%), Gaps = 3/172 (1%)

Query: 1   MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELV 60
           MKQPA+C++DME RKRI  +ALEGN LKAIELTEELA DLLE NKDLHFDLLSLHF+ELV
Sbjct: 44  MKQPADCVQDMEKRKRIFRYALEGNVLKAIELTEELAHDLLEINKDLHFDLLSLHFIELV 103

Query: 61  CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVAD 120
           C+RKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLS+EYRQ V D
Sbjct: 104 CTRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSMEYRQQVVD 163

Query: 121 NLNRAIL---ERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 169
           NLNRAIL    RP Y AMERLIQQ T VRQ L+Q+ GKD   PFSLKDF+K 
Sbjct: 164 NLNRAILAHANRPSYTAMERLIQQMTVVRQSLNQDHGKDGLQPFSLKDFLKG 215

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518435|ref|XP_003527884.1| PREDICTED: UPF0559 protein v1g247787-like [Glycine max]

 Score =  278 bits (711), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 139/170 (81%), Positives = 149/170 (87%), Gaps = 3/170 (1%)

Query: 3   QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
           QPA+ LEDM+ RKRI HFALEGNALKAIELTE+LA+D+LE NKDL FDLLSLHFVELVCS
Sbjct: 46  QPADYLEDMDKRKRIFHFALEGNALKAIELTEQLAKDILENNKDLQFDLLSLHFVELVCS 105

Query: 63  RKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNL 122
           RKCTEALEFAQTKL PFGK  KY+EKLEDFMALLAY+EPEKSPMFHLLSLEYRQ VAD+L
Sbjct: 106 RKCTEALEFAQTKLGPFGKEPKYMEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSL 165

Query: 123 NRAILER---PRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 169
           NRAIL     P Y AMERLIQQ T VRQCLSQE GKD  PPFSLKDF++S
Sbjct: 166 NRAILAHLNLPSYTAMERLIQQATVVRQCLSQEAGKDAPPPFSLKDFLRS 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248824|ref|NP_001239946.1| uncharacterized protein LOC100801338 [Glycine max] gi|255636536|gb|ACU18606.1| unknown [Glycine max]

 Score =  275 bits (704), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 140/171 (81%), Positives = 149/171 (87%), Gaps = 4/171 (2%)

Query: 2   KQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVC 61
           KQP + LEDM+ RKRI HFALEGNALKAIELTE+LA+D+LE NKDL FDLLSLHFVELVC
Sbjct: 45  KQPTDYLEDMDKRKRIFHFALEGNALKAIELTEQLAKDILENNKDLQFDLLSLHFVELVC 104

Query: 62  SRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
           SRKCTEALEFAQTKL PFGK  KY+EKLEDFMALLAY+EPEKSPMFHLLSLEYRQ VAD+
Sbjct: 105 SRKCTEALEFAQTKLGPFGKEPKYMEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADS 164

Query: 122 LNRAILER---PRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 169
           LNRAIL     P Y AMERLIQQ T VRQCLSQE GKD  PPFSLKDF+KS
Sbjct: 165 LNRAILAHLNLPSYTAMERLIQQATVVRQCLSQEAGKD-GPPFSLKDFLKS 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066094|ref|XP_002302009.1| predicted protein [Populus trichocarpa] gi|222843735|gb|EEE81282.1| predicted protein [Populus trichocarpa]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 129/172 (75%), Positives = 145/172 (84%), Gaps = 3/172 (1%)

Query: 1   MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELV 60
           M +PA+ +EDME RK I+  ALEGNALKA+ELTE++A DLLE NKDLHFDLLSLHF +LV
Sbjct: 44  MPEPADFIEDMEKRKGIVRCALEGNALKAVELTEQVAGDLLENNKDLHFDLLSLHFADLV 103

Query: 61  CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVAD 120
           C++KCTEALEFAQ KLTPFGK +KYVEKLEDFMALLAYEEPEKSP+FHLL LEYRQHVAD
Sbjct: 104 CAKKCTEALEFAQKKLTPFGKEKKYVEKLEDFMALLAYEEPEKSPVFHLLGLEYRQHVAD 163

Query: 121 NLNRAILER---PRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 169
            LNRAIL     P Y A+ERLIQQTT VRQ L+Q+ GKD  P FSLKDF+K 
Sbjct: 164 KLNRAILAHTNLPSYTAIERLIQQTTVVRQSLNQDHGKDGIPLFSLKDFLKG 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222619339|gb|EEE55471.1| hypothetical protein OsJ_03649 [Oryza sativa Japonica Group]

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 122/170 (71%), Positives = 141/170 (82%), Gaps = 3/170 (1%)

Query: 1   MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELV 60
           ++ P +   D++ RK I  F LEGNALKAI+LTEELA +LLE + DLHFDLLSLHF+ELV
Sbjct: 45  LELPVDYTVDVDKRKAIFSFVLEGNALKAIDLTEELAPNLLENDMDLHFDLLSLHFIELV 104

Query: 61  CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVAD 120
            SRKCTEALEF Q KLTPFGKV KYVEKLEDFMALLAYEEPEKSPMFHLLS EYRQ+VAD
Sbjct: 105 RSRKCTEALEFGQKKLTPFGKVPKYVEKLEDFMALLAYEEPEKSPMFHLLSPEYRQNVAD 164

Query: 121 NLNRAIL---ERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFM 167
           +LNRA+L    RP Y+++ER+IQQ T VRQ L QE+GKD +PPFSLK F+
Sbjct: 165 SLNRAVLAHANRPAYSSLERVIQQATVVRQYLQQEVGKDSYPPFSLKAFL 214

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218189143|gb|EEC71570.1| hypothetical protein OsI_03937 [Oryza sativa Indica Group]

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 122/170 (71%), Positives = 141/170 (82%), Gaps = 3/170 (1%)

Query: 1   MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELV 60
           ++ P +   D++ RK I  F LEGNALKAI+LTEELA +LLE + DLHFDLLSLHF+ELV
Sbjct: 45  LELPVDYTVDVDKRKAIFSFVLEGNALKAIDLTEELAPNLLENDMDLHFDLLSLHFIELV 104

Query: 61  CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVAD 120
            SRKCTEALEF Q KLTPFGKV KYVEKLEDFMALLAYEEPEKSPMFHLLS EYRQ+VAD
Sbjct: 105 RSRKCTEALEFGQKKLTPFGKVPKYVEKLEDFMALLAYEEPEKSPMFHLLSPEYRQNVAD 164

Query: 121 NLNRAIL---ERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFM 167
           +LNRA+L    RP Y+++ER+IQQ T VRQ L QE+GKD +PPFSLK F+
Sbjct: 165 SLNRAVLAHANRPAYSSLERVIQQATVVRQYLQQEVGKDSYPPFSLKAFL 214

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460223|ref|XP_004147845.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus] gi|449521475|ref|XP_004167755.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus]

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 129/172 (75%), Positives = 142/172 (82%), Gaps = 3/172 (1%)

Query: 1   MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELV 60
           +K   + L DM  RKRI  FA+EGNALKAIELTEE+A  LLEK +DLHFDLLSLHFVELV
Sbjct: 44  LKHHTDYLVDMAKRKRIYDFAVEGNALKAIELTEEVAPGLLEKIEDLHFDLLSLHFVELV 103

Query: 61  CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVAD 120
           CSRKCTEALEFAQ KL PFGK+ KYVEKLEDFMALLAYEEPEKSPMFHLLS++YRQ VA+
Sbjct: 104 CSRKCTEALEFAQVKLAPFGKLHKYVEKLEDFMALLAYEEPEKSPMFHLLSVDYRQRVAE 163

Query: 121 NLNRAILER---PRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 169
           +LNRAIL     P Y AMERLI+Q T VRQ LSQELGKD    FSL+DF+KS
Sbjct: 164 SLNRAILAHGNLPSYTAMERLIKQVTVVRQSLSQELGKDGFQSFSLRDFLKS 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082928|ref|XP_002306895.1| predicted protein [Populus trichocarpa] gi|222856344|gb|EEE93891.1| predicted protein [Populus trichocarpa]

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 126/172 (73%), Positives = 140/172 (81%), Gaps = 3/172 (1%)

Query: 1   MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELV 60
           M +PA+ +EDME RK I    LEGNALKAIELTE++A DLLE N DLHFDLLSLHFVELV
Sbjct: 44  MPEPADYIEDMEKRKGIFCCVLEGNALKAIELTEQVACDLLENNNDLHFDLLSLHFVELV 103

Query: 61  CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVAD 120
           C++KCTEALEFAQ KL PFGK QK +EKLEDF++LLAYEEPEKSPMFHLL  EYRQHVAD
Sbjct: 104 CAKKCTEALEFAQNKLMPFGKEQKLLEKLEDFLSLLAYEEPEKSPMFHLLGSEYRQHVAD 163

Query: 121 NLNRAILER---PRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 169
            LNRAIL     P Y A+ERLIQQT  VRQ L+Q+ GKD  PPFSLKDF+K 
Sbjct: 164 KLNRAILAHRNLPSYTAVERLIQQTIVVRQSLNQDHGKDEIPPFSLKDFLKG 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
TAIR|locus:2198796	213	AT1G06060 "AT1G06060" [Arabido	0.994	0.788	0.713	8.1e-60
UNIPROTKB|Q5ZKQ7	228	GID8 "Glucose-induced degradat	0.745	0.552	0.370	1.1e-16
UNIPROTKB|Q32L52	228	GID8 "Glucose-induced degradat	0.745	0.552	0.370	2.3e-16
MGI|MGI:1923675	228	Gid8 "GID complex subunit 8 ho	0.745	0.552	0.370	2.3e-16
UNIPROTKB|Q9NWU2	228	GID8 "Glucose-induced degradat	0.745	0.552	0.370	4.7e-16
ZFIN|ZDB-GENE-040426-1669	250	gid8a "GID complex subunit 8 h	0.745	0.504	0.354	1.6e-15
DICTYBASE|DDB_G0279265	228	DDB_G0279265 "UPF0559 protein"	0.615	0.456	0.390	7.9e-14
TAIR|locus:2008460	243	AT1G61150 "AT1G61150" [Arabido	0.615	0.427	0.390	1.6e-13
ASPGD|ASPL0000064925	271	AN7501 [Emericella nidulans (t	0.704	0.439	0.369	3e-11
TAIR|locus:2137946	447	AT4G09340 "AT4G09340" [Arabido	0.911	0.344	0.292	6.5e-09

TAIR|locus:2198796 AT1G06060 "AT1G06060" [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 122/171 (71%), Positives = 139/171 (81%)

Query:     1 MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELV 60
             +KQPA   ++ME RK+I+HF LE  ALKA ELTE+LAQDLLEKNKDL FDLL LHFVEL+
Sbjct:    42 VKQPAIDRDNMERRKQIIHFILERKALKAFELTEQLAQDLLEKNKDLQFDLLCLHFVELI 101

Query:    61 CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVAD 120
             C+  CTEAL+F +T+L PFGKV+KYVEKLED MALLAYE+PEKSPMFHLLS EYRQ VAD
Sbjct:   102 CAGNCTEALKFGKTRLAPFGKVKKYVEKLEDVMALLAYEDPEKSPMFHLLSSEYRQQVAD 161

Query:   121 NLNRAILER---PRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMK 168
             NLNR ILE    P Y  MER+IQQ T VRQ L++E GKD  PPFSLKD +K
Sbjct:   162 NLNRTILEHTNHPSYTPMERIIQQVTVVRQYLTEENGKDAFPPFSLKDSLK 212

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5ZKQ7 GID8 "Glucose-induced degradation protein 8 homolog" [Gallus gallus (taxid:9031)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 47/127 (37%), Positives = 77/127 (60%)

Query:     3 QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
             +P+  LE ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct:    56 EPSVDLETLDERIKIREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQ 115

Query:    63 RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
             R+   ALEFAQT+L   G+  +  + ++E  +ALLA++ PE+SP   LL++  RQ V   
Sbjct:   116 RETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSE 175

Query:   122 LNRAILE 128
             +N+A+L+
Sbjct:   176 VNQAVLD 182

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q32L52 GID8 "Glucose-induced degradation protein 8 homolog" [Bos taurus (taxid:9913)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 47/127 (37%), Positives = 76/127 (59%)

Query:     3 QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
             +P+  LE ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct:    56 EPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQ 115

Query:    63 RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
             R+   ALEFAQT+L   G+  +  + ++E  +ALLA++ PE SP   LL++  RQ V   
Sbjct:   116 RETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSE 175

Query:   122 LNRAILE 128
             +N+A+L+
Sbjct:   176 VNQAVLD 182

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1923675 Gid8 "GID complex subunit 8 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 47/127 (37%), Positives = 76/127 (59%)

Query:     3 QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
             +P+  LE ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct:    56 EPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQ 115

Query:    63 RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
             R+   ALEFAQT+L   G+  +  + ++E  +ALLA++ PE+SP   LL +  RQ V   
Sbjct:   116 RETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSE 175

Query:   122 LNRAILE 128
             +N+A+L+
Sbjct:   176 VNQAVLD 182

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9NWU2 GID8 "Glucose-induced degradation protein 8 homolog" [Homo sapiens (taxid:9606)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 47/127 (37%), Positives = 75/127 (59%)

Query:     3 QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
             +P+  LE ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct:    56 EPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQ 115

Query:    63 RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
             R+   ALEFAQT+L   G+  +  + ++E  +ALLA++ PE+SP   LL    RQ V   
Sbjct:   116 RETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSE 175

Query:   122 LNRAILE 128
             +N+A+L+
Sbjct:   176 VNQAVLD 182

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-1669 gid8a "GID complex subunit 8 homolog a (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 45/127 (35%), Positives = 76/127 (59%)

Query:     3 QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
             +P   L+ ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct:    78 EPNVDLDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRL 137

Query:    63 RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
             R+   ALEFAQ++L   G+  +  + ++E  +ALLA++ PE+SP   LL++  RQ V   
Sbjct:   138 RETEAALEFAQSQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSE 197

Query:   122 LNRAILE 128
             +N+A+L+
Sbjct:   198 VNQAVLD 204

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

DICTYBASE|DDB_G0279265 DDB_G0279265 "UPF0559 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 41/105 (39%), Positives = 61/105 (58%)

Query:    24 GNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQ 83
             G+  K IE+  +L  ++L+ N  L+F L     +EL+      EAL+FAQ +L P G+  
Sbjct:    81 GDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQDELAPQGEEN 140

Query:    84 -KYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAIL 127
              K++E+LE  ++LL +E+  KSP+  LL    RQ  A  LN AIL
Sbjct:   141 NKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAIL 185

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2008460 AT1G61150 "AT1G61150" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 41/105 (39%), Positives = 60/105 (57%)

Query:    24 GNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKV- 82
             GN   AIE   +L  ++L+ N +L F L     +EL+   K  EALEFAQ +L P G+  
Sbjct:    92 GNVEDAIEKVNDLNPEILDTNPELFFHLQQQRLIELIRQGKTEEALEFAQEELAPRGEEN 151

Query:    83 QKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAIL 127
             Q ++E+LE  +ALL +++    P+  LL L +R   A  +N AIL
Sbjct:   152 QAFLEELEKTVALLVFDDASTCPVKELLDLSHRLKTASEVNAAIL 196

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000064925 AN7501 [Emericella nidulans (taxid:162425)]

 Score = 157 (60.3 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 48/130 (36%), Positives = 72/130 (55%)

Query:    10 DME-MRKRI-LHFAL-EGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELV--CSRK 64
             D+E +R+R+ +  A+  GN   AIE   EL   +L++N  LHF LL L  VEL+  CS  
Sbjct:    65 DVESIRERVEIRTAIYSGNIQAAIEKINELNPQILDENPSLHFSLLRLQLVELIRSCSVN 124

Query:    65 ----CTEALEFAQTKLTPFGKVQ-KYVEKLEDFMALLAYEEPEKSP-MFHLLSLEYRQHV 118
                  T ALEFA ++L P      +++E LE  +ALL Y +   +P +  LL  + R+ +
Sbjct:   125 PDGDITPALEFATSQLAPRAPTNPQFLEDLEKTLALLIYPKENLTPSLAPLLHSDLRRDI 184

Query:   119 ADNLNRAILE 128
                +N AIL+
Sbjct:   185 YAKVNAAILQ 194

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

TAIR|locus:2137946 AT4G09340 "AT4G09340" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 6.5e-09, P = 6.5e-09
 Identities = 48/164 (29%), Positives = 82/164 (50%)

Query:    14 RKRILHFALEGNALKAIELTEELAQDLLEKNK-DLHFDLLSLHFVELVCSRKCTEALEFA 72
             RK +     +G    A+    +    L++ +K ++ F L    F+ELV      EA+++ 
Sbjct:   276 RKILRQLIRKGEIDAALAKLRDSYPQLVQNDKSEVCFLLHCQKFIELVRIGALEEAVKYG 335

Query:    73 QTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILE-RPR 131
             + +L  F  +  + + LED  ALL YE PE+S + + L    R+ VAD +N AIL  +P+
Sbjct:   336 RMELAKFIGLTTFQDILEDCFALLVYERPEESNVGYFLEETQREVVADTVNAAILSTKPK 395

Query:   132 -----YAAMERLIQQTTAVRQCLS-QELGKDVHPPFSLKDFMKS 169
                  ++ +E L++Q TA   CL  + L       FSL   +++
Sbjct:   396 GKNQSHSHLETLLRQLTAC--CLELRSLNDGQGEAFSLNRLLRT 437

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014529001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (215 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	169
pfam10607	144	pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif	3e-27
smart00757	99	smart00757, CRA, CT11-RanBPM	8e-18
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	5e-08

>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain

 Score = 99.2 bits (248), Expect = 3e-27
 Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 5/142 (3%)

Query: 10  DMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEAL 69
             + R +I    L G+  +A+E   E   +LL+ N +L F+L    F+EL+   K  EAL
Sbjct: 1   VFKERNKIRESLLNGDLEEALEWCNENKPELLKINSNLEFELRLQQFIELIREGKILEAL 60

Query: 70  EFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPE-KSPMFHLLSLEYRQHVADNLNRAILE 128
           E+A+  L PF   ++++++++  M LLA+ +P   SP   LLS    + +A+  NRAIL+
Sbjct: 61  EYARENLAPFFN-EQHLKEIQKLMGLLAFPDPTDSSPYKSLLSPSRWEKLANEFNRAILK 119

Query: 129 ---RPRYAAMERLIQQTTAVRQ 147
                  + +E L++   +  +
Sbjct: 120 LLGLSSESPLEILLKAGLSALK 141

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144

>gnl|CDD|214806 smart00757, CRA, CT11-RanBPM

 Score = 73.9 bits (182), Expect = 8e-18
 Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 6/96 (6%)

Query: 63  RKCTEALEFAQTKLTPFGKVQKYVEK-LEDFMALLAYEEP-EKSPMFHLLSLEYRQHVAD 120
            K  EAL +A+  L PF K  +   K LE  MALLAY +P E SP   LLS   R+ +A+
Sbjct: 1   GKIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAE 60

Query: 121 NLNRAILE----RPRYAAMERLIQQTTAVRQCLSQE 152
            LN AILE    +   + +E L+    A  + L ++
Sbjct: 61  ELNSAILELLHGKSSESPLEILLSAGLAALKTLLEK 96

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi). Length = 99

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 46.8 bits (112), Expect = 5e-08
 Identities = 22/54 (40%), Positives = 29/54 (53%)

Query: 14 RKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTE 67
          RKRI    L+G+  +A+E    L   LLE+N  L F+L    F+ELV   K  E
Sbjct: 5  RKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	169
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	100.0
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	100.0
KOG0396	389	consensus Uncharacterized conserved protein [Funct	99.87
smart00757	99	CRA CT11-RanBPM. protein-protein interaction domai	99.8
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	99.71
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	99.49
KOG1477	469	consensus SPRY domain-containing proteins [General	98.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	96.47
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	85.75
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	80.61

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=100.00  E-value=3.8e-35  Score=234.08  Aligned_cols=152  Identities=38%  Similarity=0.529  Sum_probs=145.4

Q ss_pred             CCchhhHHhHHHHHHHHHHHHcCCHHHHHHHHHHhchHHHccCCcceehhchHHHHHHHhhhchHHHHHHHHhhcCCcCC
Q 030912            2 KQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGK   81 (169)
Q Consensus         2 ~~p~~~~~~~~~R~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~L~F~L~~q~fIElir~~~~~eAi~~ar~~l~~~~~   81 (169)
                      +.|..|+++++.|.+|+++|.+|+|+.||+.+++++|++|++|.+|.|+|++|+||||||.|..++||+|||+++++++.
T Consensus        56 ~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~  135 (228)
T KOG2659|consen   56 KPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAE  135 (228)
T ss_pred             CCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcccccc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             -chhhHHHHHHHHHHhccCCCCCCchhhhCCHHHHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHHHhc
Q 030912           82 -VQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILE---RPRYAAMERLIQQTTAVRQCLSQEL  153 (169)
Q Consensus        82 -~~~~~~el~~~~~LLay~~p~~sp~~~Ll~~~rr~~lA~~vn~aIL~---~~~~s~Le~l~k~~~~~~~~l~~~~  153 (169)
                       ++.++.+++++|++|+|++|..||++++++.++|+++|+.||+|||.   .+..+.|..+++...|.+..+..+.
T Consensus       136 e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~s~R~kvA~~vN~aiL~~~~~~~~~~l~~llk~~~~~~~~~~~~~  211 (228)
T KOG2659|consen  136 ENPKKMEELERTLALLVFELSQESPSAELLSQSLRQKVASEVNSAILASQEHESEPKLPFLLKLISWAQEELDREK  211 (228)
T ss_pred             ccHHHHHHHHHHHHHHHcCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhHhh
Confidence             77899999999999999999999999999999999999999999999   5578999999999999998887654

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=100.00  E-value=3.1e-34  Score=215.51  Aligned_cols=138  Identities=36%  Similarity=0.598  Sum_probs=130.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhchHHHccCCcceehhchHHHHHHHhhhchHHHHHHHHhhcCCcCCchhhHHHH
Q 030912           10 DMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKL   89 (169)
Q Consensus        10 ~~~~R~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~L~F~L~~q~fIElir~~~~~eAi~~ar~~l~~~~~~~~~~~el   89 (169)
                      ++..|+.|+++|++||+++|++||++++|.+++.++.|+|.|++|+|||||++|++.+||+|||+++.++.  ..+.+++
T Consensus         1 ~~~~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~--~~~~~~l   78 (145)
T PF10607_consen    1 SFKERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFN--DEFLEEL   78 (145)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhH--HHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999997665  3588999


Q ss_pred             HHHHHHhccCCCCC---CchhhhCCHHHHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHH
Q 030912           90 EDFMALLAYEEPEK---SPMFHLLSLEYRQHVADNLNRAILE---RPRYAAMERLIQQTTAVRQCL  149 (169)
Q Consensus        90 ~~~~~LLay~~p~~---sp~~~Ll~~~rr~~lA~~vn~aIL~---~~~~s~Le~l~k~~~~~~~~l  149 (169)
                      +++|+||||++|++   +||++++++++|+.||+.||++|+.   .|..|+|+.++++..++...+
T Consensus        79 ~~~~~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~~~l~~l  144 (145)
T PF10607_consen   79 KKLMSLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGLSALKTL  144 (145)
T ss_pred             HHHHHHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhc
Confidence            99999999999987   7999999999999999999999999   788999999999999887664

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.87  E-value=8.7e-22  Score=165.53  Aligned_cols=134  Identities=23%  Similarity=0.283  Sum_probs=123.6

Q ss_pred             hhHHhHHHHHHHHHHHHcCCHHHHHHHHHHhchHHHccCCcceehhchHHHHHHHhhhchHHHHHHHHhhcCCcCCchhh
Q 030912            6 NCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKY   85 (169)
Q Consensus         6 ~~~~~~~~R~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~L~F~L~~q~fIElir~~~~~eAi~~ar~~l~~~~~~~~~   85 (169)
                      +|.|.++.-..|+++|+.|++.+|+.||++|.-.|-+.++.|+|.++.|+|||||+.++..+||+||+++|+++++  ++
T Consensus       148 vD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~--~~  225 (389)
T KOG0396|consen  148 VDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAK--SH  225 (389)
T ss_pred             HhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhh--hh
Confidence            6788889999999999999999999999999999999999999999999999999999999999999999999994  78


Q ss_pred             HHHHHHHHHHhccCCC-CCCchhhhCCHHHHHHHHHHHHHHHhc---CCCchHHHHHHHH
Q 030912           86 VEKLEDFMALLAYEEP-EKSPMFHLLSLEYRQHVADNLNRAILE---RPRYAAMERLIQQ  141 (169)
Q Consensus        86 ~~el~~~~~LLay~~p-~~sp~~~Ll~~~rr~~lA~~vn~aIL~---~~~~s~Le~l~k~  141 (169)
                      .++++.+||+|||+.- +.++|..+++..||+.+++.+-+.-+.   .|..++|-..+..
T Consensus       226 ~~~Lk~a~g~laF~~~t~~sky~~l~~~~rw~~l~~lF~s~a~~l~~i~~~~~L~~~l~~  285 (389)
T KOG0396|consen  226 KSDLKLAMGLLAFPKYTSSSKYLNLLTADRWSVLADLFLSEALKLFGIPINPALTIYLQA  285 (389)
T ss_pred             HHHHHHHHHhhcCccccCcccccCcccHHHHHHHHHHhhHHHHHHhCCCCCcHHHHHHHh
Confidence            9999999999999975 566799999999999999998885444   7888888887776

>smart00757 CRA CT11-RanBPM

Probab=99.80  E-value=4.9e-19  Score=124.65  Aligned_cols=91  Identities=42%  Similarity=0.606  Sum_probs=83.1

Q ss_pred             chHHHHHHHHhhcCCcCC-chhhHHHHHHHHHHhccCCC-CCCchhhhCCHHHHHHHHHHHHHHHhc----CCCchHHHH
Q 030912           64 KCTEALEFAQTKLTPFGK-VQKYVEKLEDFMALLAYEEP-EKSPMFHLLSLEYRQHVADNLNRAILE----RPRYAAMER  137 (169)
Q Consensus        64 ~~~eAi~~ar~~l~~~~~-~~~~~~el~~~~~LLay~~p-~~sp~~~Ll~~~rr~~lA~~vn~aIL~----~~~~s~Le~  137 (169)
                      ++.+||+|||+++++|.. ++.++++|+++||||||++| +.+||++++++++|+.||++||++||.    .+..|.|+.
T Consensus         2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll~~~~~~~la~~~n~~~l~~~~~~~~~s~L~~   81 (99)
T smart00757        2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNSAILELLHGKSSESPLEI   81 (99)
T ss_pred             cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHCCHHHHHHHHHHHHHHHHHHccCCCCCChHHH
Confidence            578999999999999996 55568899999999999999 899999999999999999999999997    456899999


Q ss_pred             HHHHHHHHHHHHHHhcC
Q 030912          138 LIQQTTAVRQCLSQELG  154 (169)
Q Consensus       138 l~k~~~~~~~~l~~~~~  154 (169)
                      ++++..|+...+...++
T Consensus        82 ~~~~~~~~~~~l~~~~~   98 (99)
T smart00757       82 LLSAGLAALKTLLEKGG   98 (99)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999887664

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=9.2e-17  Score=136.48  Aligned_cols=137  Identities=28%  Similarity=0.435  Sum_probs=122.8

Q ss_pred             HhHHHHHHHHHHHHcCCHHHHHHHHHHhchHHHccCCcceehhchHHHHHHHhhhchH--HHHHHHHhhcCCcCCchhhH
Q 030912            9 EDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCT--EALEFAQTKLTPFGKVQKYV   86 (169)
Q Consensus         9 ~~~~~R~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~L~F~L~~q~fIElir~~~~~--eAi~~ar~~l~~~~~~~~~~   86 (169)
                      ..+-+-++|.++|..||+++|++|+..+.-.|.+.++.|+|+|+.++|+++++.|+-.  +||.|||++++||+  ..+.
T Consensus       154 ~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~--~~~~  231 (394)
T KOG2817|consen  154 TEFVELNQIVEALKERDLEPALEWAESNRQKLKEKSSSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFV--ADHL  231 (394)
T ss_pred             hhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccc--cchH
Confidence            4455678999999999999999999999999999999999999999999999998766  99999999999998  4568


Q ss_pred             HHHHHHHHHhccCCC--CCCchhhhCCHHHHHHHHHHHHH---HHhc-----------CCCchHHHHHHHHHHHHHH
Q 030912           87 EKLEDFMALLAYEEP--EKSPMFHLLSLEYRQHVADNLNR---AILE-----------RPRYAAMERLIQQTTAVRQ  147 (169)
Q Consensus        87 ~el~~~~~LLay~~p--~~sp~~~Ll~~~rr~~lA~~vn~---aIL~-----------~~~~s~Le~l~k~~~~~~~  147 (169)
                      .|||.+|++|.|-.-  ++|||.+++++..|..+...+-+   +.|.           ..|+.+|+.++++..++..
T Consensus       232 ~eIQklm~sl~~l~~gl~~spy~~~ls~~~w~~~~~~f~r~ycallg~s~eSPL~v~v~aG~~Alp~Llk~~~v~~~  308 (394)
T KOG2817|consen  232 REIQKLMGSLLYLRNGLEKSPYSEILSPKLWKELTEEFTREYCALLGISVESPLSVLVNAGCIALPQLLKYKSVMEL  308 (394)
T ss_pred             HHHHHHHHHHHHHHcCCCCCChHHHhCHHHHHHHHHHHHHHHHHHcCCCccCcHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            999999999998754  79999999999999999999888   5555           2378899999999888777

>smart00668 CTLH C-terminal to LisH motif

Probab=99.49  E-value=4.8e-14  Score=89.96  Aligned_cols=56  Identities=38%  Similarity=0.524  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhchHHHccCCcceehhchHHHHHHHhhhchH
Q 030912           11 MEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCT   66 (169)
Q Consensus        11 ~~~R~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~L~F~L~~q~fIElir~~~~~   66 (169)
                      +..|..|+++|+.|++++|++|+++++|.+.++++.+.|.|++|+|||+++.|+..
T Consensus         2 ~~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~~   57 (58)
T smart00668        2 FDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKLE   57 (58)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCcC
Confidence            57899999999999999999999999999999999999999999999999988653

Alpha-helical motif of unknown function.

>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]

Probab=98.95  E-value=2e-10  Score=101.49  Aligned_cols=154  Identities=25%  Similarity=0.175  Sum_probs=125.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhchHHHc-cCCcceehhchHHHHHHHhhhchHHHHHHHHhhcCCcCC---chhhHHHH
Q 030912           14 RKRILHFALEGNALKAIELTEELAQDLLE-KNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGK---VQKYVEKL   89 (169)
Q Consensus        14 R~~I~~~I~~G~i~~Ai~~i~~~~p~ll~-~~~~L~F~L~~q~fIElir~~~~~eAi~~ar~~l~~~~~---~~~~~~el   89 (169)
                      |+.+.....+|....|+.-....+..+.+ ..+...+.+.|+.+|++.+-|.+...+++.+..+++...   +.....++
T Consensus       308 ~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~  387 (469)
T KOG1477|consen  308 RKGRGQFTRNGAYNAALIPTYRKVGQVFEVDYPQRGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGML  387 (469)
T ss_pred             hcCcceeechhhhcccccccccccceeecccccchhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccc
Confidence            33344444455544444444443332222 457899999999999999999999999999988888765   66788999


Q ss_pred             HHHHHHhccCCCCCCchhhhCCHHHHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHHHhcCCCCCCCcChhhh
Q 030912           90 EDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILE---RPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDF  166 (169)
Q Consensus        90 ~~~~~LLay~~p~~sp~~~Ll~~~rr~~lA~~vn~aIL~---~~~~s~Le~l~k~~~~~~~~l~~~~~~~~~~~~~l~~~  166 (169)
                      ..+|+||+|.+|++||..+++++.+|+-+|+.+|.+||.   .+..+.|++++.++.++...+...+.+++ .++++.+.
T Consensus       388 ~~s~~Llays~p~~s~~g~~~~~~~~e~v~~~~n~~il~t~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~  466 (469)
T KOG1477|consen  388 SDSSSLLAYSDPEESPVGYLLDPIQREPVAEALNSAILETDNNSKDPDLERVLSQTPAELSLYARDNPPRN-DFVRDRDY  466 (469)
T ss_pred             cchHHHHHhcCcccCccccccCcccchhHHhhhcccccccCCCCccchhhhhhccchhhHhhhhhcCCCcc-ceecchhh
Confidence            999999999999999999999999999999999999999   56778899999999999999998887766 78888776


Q ss_pred             hc
Q 030912          167 MK  168 (169)
Q Consensus       167 l~  168 (169)
                      +.
T Consensus       467 ~~  468 (469)
T KOG1477|consen  467 FH  468 (469)
T ss_pred             hc
Confidence            54

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.47  E-value=0.03  Score=49.08  Aligned_cols=129  Identities=17%  Similarity=0.164  Sum_probs=91.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHh-chHHHccCCcceehhchHHHHHHHhhhchHHHHHHHHhhcCCcCCchhhHHHHHHH
Q 030912           14 RKRILHFALEGNALKAIELTEEL-AQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDF   92 (169)
Q Consensus        14 R~~I~~~I~~G~i~~Ai~~i~~~-~p~ll~~~~~L~F~L~~q~fIElir~~~~~eAi~~ar~~l~~~~~~~~~~~el~~~   92 (169)
                      -+...+.++.|+.+.++.-.... ++. ..+.....|.+..|.|+|..+.|++.+|+..-|..+....   -.++.+.++
T Consensus        53 ~klf~q~vlqg~w~q~v~~~~~i~~~d-e~~~~ea~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~lr---~~~kk~~el  128 (519)
T KOG0293|consen   53 TKLFDQQVLQGQWDQQVMSLVRISFED-ERNRKEAMFLVNKQIFLEFLKTGSISHALPVLRNPVLYLR---KNKKKFHEL  128 (519)
T ss_pred             HHHHHHHHHcccHHHHHHHHhhccCcc-hhhhHHHHHHHHHHHHHHHHhhccHhhhhHhhhcchhhhh---hhHHHHHHH
Confidence            34567889999999987776665 666 4555678999999999999999999999998886555553   345678888


Q ss_pred             HHHhccCCCCCC-c--hhhhCCHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHH
Q 030912           93 MALLAYEEPEKS-P--MFHLLSLEYRQHVADNLNRAILE--RPRYAAMERLIQQTTAVRQ  147 (169)
Q Consensus        93 ~~LLay~~p~~s-p--~~~Ll~~~rr~~lA~~vn~aIL~--~~~~s~Le~l~k~~~~~~~  147 (169)
                      ...|.+++...+ .  -...+ -..|.++-+++..-|=-  .=+.-.||.+++|+...|.
T Consensus       129 ~~sll~sn~~~~ne~~~~~~~-~n~R~~ll~elskyi~p~illP~rRLehLl~qAv~~Q~  187 (519)
T KOG0293|consen  129 ASSLLVSNDQFSNEENTTAQL-NNERDKLLDELSKYIPPNILLPKRRLEHLLEQAVKYQR  187 (519)
T ss_pred             HHHHhccccccccccchhhhh-chhHHHHHHHHHhhCCHhhcCChHHHHHHHHHHHHHHH
Confidence            888888875322 1  11222 23455666666554422  2356689999999876543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=85.75  E-value=3.8  Score=25.47  Aligned_cols=59  Identities=20%  Similarity=0.113  Sum_probs=36.1

Q ss_pred             HHHcCCHHHHHHHHHHhchHHHccCCcceehhchHHHHHHHhhhchHHHHHHHHhhcCCcCCch
Q 030912           20 FALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQ   83 (169)
Q Consensus        20 ~I~~G~i~~Ai~~i~~~~p~ll~~~~~L~F~L~~q~fIElir~~~~~eAi~~ar~~l~~~~~~~   83 (169)
                      ++..|+.+.|++.+++.. .....+..+.+    .--.=+++.|+.++|...-.+.+....+++
T Consensus         1 ll~~~~~~~A~~~~~~~l-~~~p~~~~~~~----~la~~~~~~g~~~~A~~~l~~~~~~~~~~~   59 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKAL-QRNPDNPEARL----LLAQCYLKQGQYDEAEELLERLLKQDPDNP   59 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHH-HHTTTSHHHHH----HHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred             ChhccCHHHHHHHHHHHH-HHCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence            478899999999997643 11112223333    222234678999999988887666654333

...

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=80.61  E-value=21  Score=31.39  Aligned_cols=95  Identities=14%  Similarity=0.107  Sum_probs=70.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhchHHHccCCcceehhchHHHHHHHhhhchHHHHHHHHhhcCCcCCchhhHHHHHHHHH
Q 030912           15 KRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMA   94 (169)
Q Consensus        15 ~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~L~F~L~~q~fIElir~~~~~eAi~~ar~~l~~~~~~~~~~~el~~~~~   94 (169)
                      .-+.++|.+|+-++|.+|+.+..+.-.+.+        ...||.-++-++...-++-+++-+....++|    .+-.+.|
T Consensus       268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--------L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p----~L~~tLG  335 (400)
T COG3071         268 AYAERLIRLGDHDEAQEIIEDALKRQWDPR--------LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP----LLLSTLG  335 (400)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhccChh--------HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh----hHHHHHH
Confidence            356789999999999999999887777664        6678888888888888888887777776555    5677788


Q ss_pred             HhccCCCCCCchhhhCCHHHHHHHHHHHHHHHhcCCCch
Q 030912           95 LLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILERPRYA  133 (169)
Q Consensus        95 LLay~~p~~sp~~~Ll~~~rr~~lA~~vn~aIL~~~~~s  133 (169)
                      -|||.+            ..|.+-.+.+-.||-..|+.+
T Consensus       336 ~L~~k~------------~~w~kA~~~leaAl~~~~s~~  362 (400)
T COG3071         336 RLALKN------------KLWGKASEALEAALKLRPSAS  362 (400)
T ss_pred             HHHHHh------------hHHHHHHHHHHHHHhcCCChh
Confidence            888875            556665555655555444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	169
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 26/199 (13%), Positives = 63/199 (31%), Gaps = 43/199 (21%)

Query: 6   NCLEDMEMRKRILHFAL--EG-----NALKAI--ELTEELAQDLLEK-------NKDLHF 49
           N LE  E RK     ++           L  I  ++ +     ++ K        K    
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 50  DLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMAL---------LAY-- 98
             +S+  + L    K        ++ +  +   + +    +D +           + +  
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF--DSDDLIPPYLDQYFYSHIGHHL 481

Query: 99  ---EEPEKSPMFHLLSLEYRQHVADNLNRAILERPRYAAMERLIQQTTAVRQCLSQELGK 155
              E PE+  +F ++ L++R  +   +           ++   +QQ    +  +      
Sbjct: 482 KNIEHPERMTLFRMVFLDFR-FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC----- 535

Query: 156 DVHPPF-----SLKDFMKS 169
           D  P +     ++ DF+  
Sbjct: 536 DNDPKYERLVNAILDFLPK 554

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	169
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	83.91

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=83.91  E-value=0.61  Score=34.43  Aligned_cols=107  Identities=13%  Similarity=0.156  Sum_probs=66.2

Q ss_pred             HHHHHHhchHHHccC-CcceehhchHHHHHHHhhhchHHHHHHHHhhcCCcCCchhhHHHHHHHHHHhccCCCCCCchhh
Q 030912           30 IELTEELAQDLLEKN-KDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFH  108 (169)
Q Consensus        30 i~~i~~~~p~ll~~~-~~L~F~L~~q~fIElir~~~~~eAi~~ar~~l~~~~~~~~~~~el~~~~~LLay~~p~~sp~~~  108 (169)
                      .+|++. .+++.+.. ..+.|=+-+.-|++||.+|...+|-.|-.++-..+.  +.+..++++..++.--....+.++..
T Consensus        35 ~~wv~~-sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~--~~~~~~i~~L~~i~~~~~l~~n~~~~  111 (156)
T 2nxp_A           35 KHFIEC-SLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQE--CYYQDDLRVLSSLTKKEHMKGNETML  111 (156)
T ss_dssp             HHHHHT-SCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSC--GGGHHHHHHHHTCCSHHHHTTCGGGG
T ss_pred             HHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhH--HHHHHHHHHHhcCCCHHHHhhcHHHH
Confidence            456655 33333322 468899999999999999999999999988777765  56778888877765544444555443


Q ss_pred             hC-CHHHHHHHHHHHHHHHhc---CCCchHHHHHH
Q 030912          109 LL-SLEYRQHVADNLNRAILE---RPRYAAMERLI  139 (169)
Q Consensus       109 Ll-~~~rr~~lA~~vn~aIL~---~~~~s~Le~l~  139 (169)
                      .+ +...+-.+.......++.   ..+.+.+-.++
T Consensus       112 ~fr~~Ky~I~ls~~s~~lL~~fL~~~~~~~ll~Ii  146 (156)
T 2nxp_A          112 DFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIV  146 (156)
T ss_dssp             GGCGGGSEEEEEHHHHHHHHHHHTTSTTCHHHHHH
T ss_pred             HHHhCCeEEEECHHHHHHHHHHHHHcCChHHHHHH
Confidence            33 333333333333333333   33444444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	169
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	81.98

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.98  E-value=0.38  Score=33.58  Aligned_cols=60  Identities=20%  Similarity=0.219  Sum_probs=46.6

Q ss_pred             CcceehhchHHHHHHHhhhchHHHHHHHHhhcCCcCCchhhHHHHHHHHHHhccCCCCCCch
Q 030912           45 KDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPM  106 (169)
Q Consensus        45 ~~L~F~L~~q~fIElir~~~~~eAi~~ar~~l~~~~~~~~~~~el~~~~~LLay~~p~~sp~  106 (169)
                      ..+.|=+-+--|++||.+|...+|..|-.+.-..+.  +.+.+.|+++.++---.+-.+.|.
T Consensus        43 ~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~--~~~~~~I~~L~~i~~~~~l~~n~~  102 (149)
T d2nxpa1          43 SQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQE--CYYQDDLRVLSSLTKKEHMKGNET  102 (149)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSC--GGGHHHHHHHHTCCSHHHHTTCGG
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhh--HHHHHHHHHHHcCCCHHHHhhhHH
Confidence            468899999999999999999999999998766654  567788888877655444444443