Citrus Sinensis ID: 030931

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MLRVKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF
Secondary Structure (PSIPRED)
cccccccccccHHHHHccccccccccEEEEEEEEccEEEEEEEEcccccccccHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccHHHHHHHccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEEccccEccEEEEEEEEccEEEEEEEccccccccHHHHHHHHHEEEEEEEEEcccHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccHHHHHHHHcccccccccEEEEEcEccccEcHHHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
mlrvkqpyctsctLVKFYLLFLLLVRFNVEKVQYKNVIFTVwdvggqeklrpLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANkqdmkgamtpmevceglglfdlknrkwhiqgtcalkgdglyEGLDWLASTLKEMRAagyssvgtssf
Flexible Loop (DISEMBL)
mlrvkqpyctscTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFqaiikdpfmLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRaagyssvgtssf
Low Complexity Region (SEG)
MLRVKQPYCTSCTlvkfyllflllvrfnvEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF
Disordered region (IsUnstruct)
*****QPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE**************
Disordered Region (DISOPRED)
*****QPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS******************
Disordered Region (DISEMBL)
MLRVKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAA**********
Disordered Region (DISPRO)
*LRVKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK***************
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRVKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	169	2.2.26 [Sep-21-2011]
P91924	183	ADP-ribosylation factor O	N/A	no	0.769	0.710	0.615	1e-46
P61210	182	ADP-ribosylation factor 1	N/A	no	0.769	0.714	0.607	2e-45
P61209	182	ADP-ribosylation factor 1	yes	no	0.769	0.714	0.607	2e-45
Q10943	181	ADP-ribosylation factor 1	yes	no	0.769	0.718	0.615	2e-45
Q61LA8	181	ADP-ribosylation factor 1	N/A	no	0.769	0.718	0.615	2e-45
P61207	181	ADP-ribosylation factor 3	N/A	no	0.786	0.734	0.586	1e-44
P61206	181	ADP-ribosylation factor 3	yes	no	0.786	0.734	0.586	1e-44
Q5R5P7	181	ADP-ribosylation factor 3	yes	no	0.786	0.734	0.586	1e-44
P61205	181	ADP-ribosylation factor 3	yes	no	0.786	0.734	0.586	1e-44
P61204	181	ADP-ribosylation factor 3	yes	no	0.786	0.734	0.586	1e-44

>sp|P91924|ARF_DUGJA ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3

 Score =  185 bits (470), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 104/130 (80%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E  
Sbjct: 49  IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELM 108

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            ++ +  + ++V+LVFANKQD+  AM P E+ + LGL  L+NR W+IQ TCA  GDGLYE
Sbjct: 109 RMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYE 168

Query: 145 GLDWLASTLK 154
           GLDWL++TLK
Sbjct: 169 GLDWLSTTLK 178

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.
Dugesia japonica (taxid: 6161)

>sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2

 Score =  181 bits (459), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 103/130 (79%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRERIG+A++E  
Sbjct: 49  IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELM 108

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            ++ +  + ++V+L+FANKQD+  AM   E+ + LGL  L+NR W+IQ TCA  GDGLYE
Sbjct: 109 RMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYE 168

Query: 145 GLDWLASTLK 154
           GLDWL++ LK
Sbjct: 169 GLDWLSNQLK 178

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Locusta migratoria (taxid: 7004)

>sp|P61209|ARF1_DROME ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=2 SV=2

 Score =  181 bits (459), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 103/130 (79%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRERIG+A++E  
Sbjct: 49  IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELM 108

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            ++ +  + ++V+L+FANKQD+  AM   E+ + LGL  L+NR W+IQ TCA  GDGLYE
Sbjct: 109 RMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYE 168

Query: 145 GLDWLASTLK 154
           GLDWL++ LK
Sbjct: 169 GLDWLSNQLK 178

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Drosophila melanogaster (taxid: 7227)

>sp|Q10943|ARF12_CAEEL ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=2 SV=2

 Score =  181 bits (459), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 103/130 (79%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+G+A++E  
Sbjct: 49  IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELM 108

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            ++ +  + ++V+LVFANKQD+  AM   EV + LGL  L+NR W+IQ TCA  GDGLYE
Sbjct: 109 RMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYE 168

Query: 145 GLDWLASTLK 154
           GLDWL++ LK
Sbjct: 169 GLDWLSNQLK 178

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus (By similarity). Involved in endoplasmic reticulum dynamics during embryogenesis. Also required for adult germline function.

Caenorhabditis elegans (taxid: 6239)

>sp|Q61LA8|ARF12_CAEBR ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3

 Score =  181 bits (459), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 103/130 (79%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+G+A++E  
Sbjct: 49  IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELM 108

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            ++ +  + ++V+LVFANKQD+  AM   EV + LGL  L+NR W+IQ TCA  GDGLYE
Sbjct: 109 RMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYE 168

Query: 145 GLDWLASTLK 154
           GLDWL++ LK
Sbjct: 169 GLDWLSNQLK 178

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Involved in endoplasmic reticulum dynamics during embryogenesis. Also required for adult germline function.

Caenorhabditis briggsae (taxid: 6238)

>sp|P61207|ARF3_TAKRU ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2

 Score =  178 bits (452), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 78/133 (58%), Positives = 103/133 (77%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E  
Sbjct: 49  IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELM 108

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYE
Sbjct: 109 RMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 168

Query: 145 GLDWLASTLKEMR 157
           GLDWLA+ LK  +
Sbjct: 169 GLDWLANQLKNKK 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Takifugu rubripes (taxid: 31033)

>sp|P61206|ARF3_RAT ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=1 SV=2

 Score =  178 bits (452), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 78/133 (58%), Positives = 103/133 (77%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E  
Sbjct: 49  IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELM 108

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYE
Sbjct: 109 RMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 168

Query: 145 GLDWLASTLKEMR 157
           GLDWLA+ LK  +
Sbjct: 169 GLDWLANQLKNKK 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Rattus norvegicus (taxid: 10116)

>sp|Q5R5P7|ARF3_PONAB ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3

 Score =  178 bits (452), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 78/133 (58%), Positives = 103/133 (77%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E  
Sbjct: 49  IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELM 108

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYE
Sbjct: 109 RMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 168

Query: 145 GLDWLASTLKEMR 157
           GLDWLA+ LK  +
Sbjct: 169 GLDWLANQLKNKK 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Pongo abelii (taxid: 9601)

>sp|P61205|ARF3_MOUSE ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2

 Score =  178 bits (452), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 78/133 (58%), Positives = 103/133 (77%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E  
Sbjct: 49  IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELM 108

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYE
Sbjct: 109 RMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 168

Query: 145 GLDWLASTLKEMR 157
           GLDWLA+ LK  +
Sbjct: 169 GLDWLANQLKNKK 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Mus musculus (taxid: 10090)

>sp|P61204|ARF3_HUMAN ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2

 Score =  178 bits (452), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 78/133 (58%), Positives = 103/133 (77%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E  
Sbjct: 49  IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELM 108

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYE
Sbjct: 109 RMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 168

Query: 145 GLDWLASTLKEMR 157
           GLDWLA+ LK  +
Sbjct: 169 GLDWLANQLKNKK 181

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
255557975	193	ADP-ribosylation factor, arf, putative [	0.857	0.751	0.944	8e-78
225454817	193	PREDICTED: ADP-ribosylation factor [Viti	0.857	0.751	0.937	3e-77
224126653	193	predicted protein [Populus trichocarpa]	0.857	0.751	0.937	4e-77
58220034	192	ADP-ribosylation factor [Daucus carota]	0.852	0.75	0.930	1e-76
351722935	176	uncharacterized protein LOC100305554 [Gl	0.940	0.903	0.852	2e-76
224144915	193	predicted protein [Populus trichocarpa]	0.857	0.751	0.903	5e-76
449451823	192	PREDICTED: ADP-ribosylation factor-like	0.846	0.744	0.930	1e-74
449525399	192	PREDICTED: ADP-ribosylation factor-like	0.846	0.744	0.923	2e-73
357474237	195	ADP-ribosylation factor-like protein [Me	0.857	0.743	0.897	6e-73
15228464	192	ADP-ribosylation factor B1C [Arabidopsis	0.846	0.744	0.902	6e-73

>gi|255557975|ref|XP_002520016.1| ADP-ribosylation factor, arf, putative [Ricinus communis] gi|223540780|gb|EEF42340.1| ADP-ribosylation factor, arf, putative [Ricinus communis]

 Score =  294 bits (753), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 137/145 (94%), Positives = 143/145 (98%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVEKVQYKNV+FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG+AK EFQ
Sbjct: 49  IGFNVEKVQYKNVMFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGRAKAEFQ 108

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
           AIIKDPFMLNSV+LVFANKQDMKGAMTPMEVCEGLGLF+LKNRKWHIQGTCAL+GDGLYE
Sbjct: 109 AIIKDPFMLNSVLLVFANKQDMKGAMTPMEVCEGLGLFELKNRKWHIQGTCALRGDGLYE 168

Query: 145 GLDWLASTLKEMRAAGYSSVGTSSF 169
           GLDWLASTLKEMRAAGYSSVGTSSF
Sbjct: 169 GLDWLASTLKEMRAAGYSSVGTSSF 193

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454817|ref|XP_002274926.1| PREDICTED: ADP-ribosylation factor [Vitis vinifera] gi|147778405|emb|CAN63035.1| hypothetical protein VITISV_023129 [Vitis vinifera] gi|297737336|emb|CBI26537.3| unnamed protein product [Vitis vinifera]

 Score =  292 bits (748), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 136/145 (93%), Positives = 142/145 (97%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVEKVQYKNV+FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAK EFQ
Sbjct: 49  IGFNVEKVQYKNVMFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKAEFQ 108

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
           AII+DPFMLNSVIL+FANKQDMKGAMTPMEVCEGLGL+DLKNRKWHIQGTCALKGDGLYE
Sbjct: 109 AIIRDPFMLNSVILIFANKQDMKGAMTPMEVCEGLGLYDLKNRKWHIQGTCALKGDGLYE 168

Query: 145 GLDWLASTLKEMRAAGYSSVGTSSF 169
           GLDWLA TLKE+RAAGYSSVGTSSF
Sbjct: 169 GLDWLAGTLKELRAAGYSSVGTSSF 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126653|ref|XP_002319891.1| predicted protein [Populus trichocarpa] gi|222858267|gb|EEE95814.1| predicted protein [Populus trichocarpa]

 Score =  292 bits (747), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 136/145 (93%), Positives = 141/145 (97%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVEKVQYKNV+FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAK EFQ
Sbjct: 49  IGFNVEKVQYKNVVFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKAEFQ 108

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            IIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF+LKNRKWHIQGTCAL+GDGLYE
Sbjct: 109 TIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFELKNRKWHIQGTCALRGDGLYE 168

Query: 145 GLDWLASTLKEMRAAGYSSVGTSSF 169
           GLDWL+ TLKEMRAAGYSSVGTSSF
Sbjct: 169 GLDWLSGTLKEMRAAGYSSVGTSSF 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|58220034|gb|AAW67545.1| ADP-ribosylation factor [Daucus carota]

 Score =  290 bits (742), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 134/144 (93%), Positives = 141/144 (97%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVEKVQYKNV+FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAK EFQ
Sbjct: 49  IGFNVEKVQYKNVVFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKAEFQ 108

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
           AIIKDPFMLNS+ILVFANKQDMKGAM+PMEVCEGLGL DLKNRKWHIQGTCALKGDGLYE
Sbjct: 109 AIIKDPFMLNSIILVFANKQDMKGAMSPMEVCEGLGLLDLKNRKWHIQGTCALKGDGLYE 168

Query: 145 GLDWLASTLKEMRAAGYSSVGTSS 168
           GLDWLASTLKE++AAGYSS+GTSS
Sbjct: 169 GLDWLASTLKELKAAGYSSIGTSS 192

Source: Daucus carota

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722935|ref|NP_001237005.1| uncharacterized protein LOC100305554 [Glycine max] gi|255625897|gb|ACU13293.1| unknown [Glycine max]

 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 139/163 (85%), Positives = 149/163 (91%), Gaps = 4/163 (2%)

Query: 11  SCTLVKFYLLFLL----LVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY 66
           +  L KF++  +L     + FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF+NTDGLIY
Sbjct: 14  TTILYKFHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFDNTDGLIY 73

Query: 67  VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKN 126
           VVDSLDRERIGKAKQEFQ II DPFMLNSVILVFANKQD++GAMTPMEVCEGLGLFDLKN
Sbjct: 74  VVDSLDRERIGKAKQEFQTIINDPFMLNSVILVFANKQDLRGAMTPMEVCEGLGLFDLKN 133

Query: 127 RKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF 169
           RKWHIQGTCALKGDGLYEGLDWLASTLKE +AAGYSS+GTSSF
Sbjct: 134 RKWHIQGTCALKGDGLYEGLDWLASTLKERKAAGYSSIGTSSF 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144915|ref|XP_002325461.1| predicted protein [Populus trichocarpa] gi|222862336|gb|EEE99842.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (737), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 131/145 (90%), Positives = 141/145 (97%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVEKVQYKNV+FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG+AK+EFQ
Sbjct: 49  IGFNVEKVQYKNVVFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGRAKEEFQ 108

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            I+KDPFMLNS+ILVFANKQDMKGAMTPMEVCEGLGLF+L+NRKWHIQGTCAL+GDGLYE
Sbjct: 109 TIVKDPFMLNSIILVFANKQDMKGAMTPMEVCEGLGLFELQNRKWHIQGTCALRGDGLYE 168

Query: 145 GLDWLASTLKEMRAAGYSSVGTSSF 169
           GLDWL+ T KEMRAAGYSSVGTSSF
Sbjct: 169 GLDWLSGTFKEMRAAGYSSVGTSSF 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451823|ref|XP_004143660.1| PREDICTED: ADP-ribosylation factor-like [Cucumis sativus]

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/143 (93%), Positives = 138/143 (96%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVEKVQYKNV+FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI KAK EFQ
Sbjct: 49  IGFNVEKVQYKNVVFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIVKAKTEFQ 108

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
           AII DPFMLNSVILVFANKQDMKGAMTPMEVC+GLGLFDLK+RKWHIQGTCAL+GDGLYE
Sbjct: 109 AIINDPFMLNSVILVFANKQDMKGAMTPMEVCQGLGLFDLKHRKWHIQGTCALRGDGLYE 168

Query: 145 GLDWLASTLKEMRAAGYSSVGTS 167
           GLDWLA TLKEMRAAGYSSVGTS
Sbjct: 169 GLDWLAGTLKEMRAAGYSSVGTS 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525399|ref|XP_004169705.1| PREDICTED: ADP-ribosylation factor-like [Cucumis sativus]

 Score =  280 bits (715), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 132/143 (92%), Positives = 137/143 (95%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVEKVQYKNV+FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI KAK EFQ
Sbjct: 49  IGFNVEKVQYKNVVFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIVKAKTEFQ 108

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
           AII DPFMLNSVILVFANKQDMKGAMTPMEVC+GLGLFDLK+RKWHIQGTCAL+GDGL E
Sbjct: 109 AIINDPFMLNSVILVFANKQDMKGAMTPMEVCQGLGLFDLKHRKWHIQGTCALRGDGLCE 168

Query: 145 GLDWLASTLKEMRAAGYSSVGTS 167
           GLDWLA TLKEMRAAGYSSVGTS
Sbjct: 169 GLDWLAGTLKEMRAAGYSSVGTS 191

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474237|ref|XP_003607403.1| ADP-ribosylation factor-like protein [Medicago truncatula] gi|355508458|gb|AES89600.1| ADP-ribosylation factor-like protein [Medicago truncatula]

 Score =  278 bits (711), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 132/147 (89%), Positives = 139/147 (94%), Gaps = 2/147 (1%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVEKVQYKNVIFTVWDVGGQEKLR LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ
Sbjct: 49  IGFNVEKVQYKNVIFTVWDVGGQEKLRTLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 108

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            II DPFMLNSVILV ANKQD++GAMTP EVC+GLGLFDLKNRKWHIQGTCALKGDGLYE
Sbjct: 109 TIINDPFMLNSVILVLANKQDLRGAMTPREVCDGLGLFDLKNRKWHIQGTCALKGDGLYE 168

Query: 145 GLDWLASTLKEMRAAGYSS--VGTSSF 169
           GLDWL+STLKEM+AAGYSS  +GTSSF
Sbjct: 169 GLDWLSSTLKEMKAAGYSSLGLGTSSF 195

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228464|ref|NP_186962.1| ADP-ribosylation factor B1C [Arabidopsis thaliana] gi|6714424|gb|AAF26112.1|AC012328_15 putative ADP-ribosylation factor [Arabidopsis thaliana] gi|21537228|gb|AAM61569.1| putative ADP-ribosylation factor [Arabidopsis thaliana] gi|28393278|gb|AAO42067.1| putative ADP-ribosylation factor [Arabidopsis thaliana] gi|28827546|gb|AAO50617.1| putative ADP-ribosylation factor [Arabidopsis thaliana] gi|332640383|gb|AEE73904.1| ADP-ribosylation factor B1C [Arabidopsis thaliana]

 Score =  278 bits (710), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 129/143 (90%), Positives = 138/143 (96%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ
Sbjct: 49  IGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 108

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            II+DPFMLNSVILVFANKQDM+GAM+P EVCEGLGL DLKNRKWHIQGTCAL+GDGLYE
Sbjct: 109 DIIRDPFMLNSVILVFANKQDMRGAMSPREVCEGLGLLDLKNRKWHIQGTCALQGDGLYE 168

Query: 145 GLDWLASTLKEMRAAGYSSVGTS 167
           GLDWL++TLKE++AAGYSSVG S
Sbjct: 169 GLDWLSATLKEVKAAGYSSVGPS 191

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
TAIR|locus:2097725	192	ARFB1C "ADP-ribosylation facto	0.816	0.718	0.913	4e-67
TAIR|locus:2148141	192	ARFB1B "ADP-ribosylation facto	0.816	0.718	0.898	5.1e-67
FB|FBgn0010348	182	Arf79F "ADP ribosylation facto	0.739	0.686	0.608	3.6e-41
WB|WBGene00000182	181	arf-1.2 [Caenorhabditis elegan	0.739	0.690	0.616	4.6e-41
UNIPROTKB|Q10943	181	arf-1.2 "ADP-ribosylation fact	0.739	0.690	0.616	4.6e-41
UNIPROTKB|Q5E9I6	181	ARF3 "ADP-ribosylation factor	0.757	0.707	0.585	2e-40
UNIPROTKB|E2RSF6	181	WNT10B "Uncharacterized protei	0.757	0.707	0.585	2e-40
UNIPROTKB|P61204	181	ARF3 "ADP-ribosylation factor	0.757	0.707	0.585	2e-40
MGI|MGI:99432	181	Arf3 "ADP-ribosylation factor	0.757	0.707	0.585	2e-40
RGD|621273	181	Arf3 "ADP-ribosylation factor	0.757	0.707	0.585	2e-40

TAIR|locus:2097725 ARFB1C "ADP-ribosylation factor B1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 126/138 (91%), Positives = 134/138 (97%)

Query:    30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
             EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ II+D
Sbjct:    54 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQDIIRD 113

Query:    90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             PFMLNSVILVFANKQDM+GAM+P EVCEGLGL DLKNRKWHIQGTCAL+GDGLYEGLDWL
Sbjct:   114 PFMLNSVILVFANKQDMRGAMSPREVCEGLGLLDLKNRKWHIQGTCALQGDGLYEGLDWL 173

Query:   150 ASTLKEMRAAGYSSVGTS 167
             ++TLKE++AAGYSSVG S
Sbjct:   174 SATLKEVKAAGYSSVGPS 191

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

TAIR|locus:2148141 ARFB1B "ADP-ribosylation factor B1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 124/138 (89%), Positives = 135/138 (97%)

Query:    30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
             EKVQYKNV+FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ IIKD
Sbjct:    54 EKVQYKNVMFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQEIIKD 113

Query:    90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             PFMLNS+ILVFANKQDM+GAM+P EVCEGLGLFDLKNRKWHIQGTCAL+GDGLYEGLDWL
Sbjct:   114 PFMLNSIILVFANKQDMRGAMSPREVCEGLGLFDLKNRKWHIQGTCALRGDGLYEGLDWL 173

Query:   150 ASTLKEMRAAGYSSVGTS 167
             +STLK+++AAG++SVG S
Sbjct:   174 SSTLKDVKAAGFTSVGHS 191

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

FB|FBgn0010348 Arf79F "ADP ribosylation factor at 79F" [Drosophila melanogaster (taxid:7227)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 76/125 (60%), Positives = 99/125 (79%)

Query:    30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
             E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRERIG+A++E   ++ +
Sbjct:    54 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAE 113

Query:    90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
               + ++V+L+FANKQD+  AM   E+ + LGL  L+NR W+IQ TCA  GDGLYEGLDWL
Sbjct:   114 DELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWL 173

Query:   150 ASTLK 154
             ++ LK
Sbjct:   174 SNQLK 178

GO:0006471 "protein ADP-ribosylation" evidence=ISS;NAS

GO:0005525 "GTP binding" evidence=ISS;NAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0048488 "synaptic vesicle endocytosis" evidence=TAS

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0003924 "GTPase activity" evidence=ISS

GO:0010883 "regulation of lipid storage" evidence=IDA

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0048749 "compound eye development" evidence=IMP

GO:0032011 "ARF protein signal transduction" evidence=IGI

GO:0005795 "Golgi stack" evidence=IDA

WB|WBGene00000182 arf-1.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 77/125 (61%), Positives = 99/125 (79%)

Query:    30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
             E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+G+A++E   ++ +
Sbjct:    54 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAE 113

Query:    90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
               + ++V+LVFANKQD+  AM   EV + LGL  L+NR W+IQ TCA  GDGLYEGLDWL
Sbjct:   114 DELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWL 173

Query:   150 ASTLK 154
             ++ LK
Sbjct:   174 SNQLK 178

GO:0006886 "intracellular protein transport" evidence=IEA;IMP

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000003 "reproduction" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0048599 "oocyte development" evidence=IMP

GO:0048259 "regulation of receptor-mediated endocytosis" evidence=IGI

UNIPROTKB|Q10943 arf-1.2 "ADP-ribosylation factor 1-like 2" [Caenorhabditis elegans (taxid:6239)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 77/125 (61%), Positives = 99/125 (79%)

Query:    30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
             E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+G+A++E   ++ +
Sbjct:    54 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAE 113

Query:    90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
               + ++V+LVFANKQD+  AM   EV + LGL  L+NR W+IQ TCA  GDGLYEGLDWL
Sbjct:   114 DELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWL 173

Query:   150 ASTLK 154
             ++ LK
Sbjct:   174 SNQLK 178

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0007276 "gamete generation" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q5E9I6 ARF3 "ADP-ribosylation factor 3" [Bos taurus (taxid:9913)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 75/128 (58%), Positives = 99/128 (77%)

Query:    30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
             E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +
Sbjct:    54 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 113

Query:    90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
               + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL
Sbjct:   114 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173

Query:   150 ASTLKEMR 157
             A+ LK  +
Sbjct:   174 ANQLKNKK 181

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|E2RSF6 WNT10B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 75/128 (58%), Positives = 99/128 (77%)

Query:    30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
             E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +
Sbjct:    54 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 113

Query:    90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
               + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL
Sbjct:   114 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173

Query:   150 ASTLKEMR 157
             A+ LK  +
Sbjct:   174 ANQLKNKK 181

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P61204 ARF3 "ADP-ribosylation factor 3" [Homo sapiens (taxid:9606)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 75/128 (58%), Positives = 99/128 (77%)

Query:    30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
             E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +
Sbjct:    54 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 113

Query:    90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
               + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL
Sbjct:   114 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173

Query:   150 ASTLKEMR 157
             A+ LK  +
Sbjct:   174 ANQLKNKK 181

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0003924 "GTPase activity" evidence=TAS

GO:0000139 "Golgi membrane" evidence=TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=TAS

MGI|MGI:99432 Arf3 "ADP-ribosylation factor 3" [Mus musculus (taxid:10090)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 75/128 (58%), Positives = 99/128 (77%)

Query:    30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
             E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +
Sbjct:    54 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 113

Query:    90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
               + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL
Sbjct:   114 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173

Query:   150 ASTLKEMR 157
             A+ LK  +
Sbjct:   174 ANQLKNKK 181

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=TAS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=IEA

RGD|621273 Arf3 "ADP-ribosylation factor 3" [Rattus norvegicus (taxid:10116)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 75/128 (58%), Positives = 99/128 (77%)

Query:    30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
             E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +
Sbjct:    54 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 113

Query:    90 PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
               + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL
Sbjct:   114 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173

Query:   150 ASTLKEMR 157
             A+ LK  +
Sbjct:   174 ANQLKNKK 181

GO:0005525 "GTP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O00909	ARF1_DICDI	No assigned EC number	0.5968	0.7633	0.7087	yes	no
Q10943	ARF12_CAEEL	No assigned EC number	0.6153	0.7692	0.7182	yes	no
Q5R5P7	ARF3_PONAB	No assigned EC number	0.5864	0.7869	0.7348	yes	no
P84080	ARF1_BOVIN	No assigned EC number	0.5714	0.7869	0.7348	yes	no
P0CM16	ARF_CRYNJ	No assigned EC number	0.5769	0.7692	0.7142	yes	no
P84077	ARF1_HUMAN	No assigned EC number	0.5714	0.7869	0.7348	yes	no
Q94650	ARF1_PLAFA	No assigned EC number	0.5725	0.7751	0.7237	yes	no
P36579	ARF1_SCHPO	No assigned EC number	0.5769	0.7692	0.7222	yes	no
Q7KQL3	ARF1_PLAF7	No assigned EC number	0.5725	0.7751	0.7237	yes	no
P84079	ARF1_RAT	No assigned EC number	0.5714	0.7869	0.7348	yes	no
P84078	ARF1_MOUSE	No assigned EC number	0.5714	0.7869	0.7348	yes	no
P19146	ARF2_YEAST	No assigned EC number	0.5692	0.7692	0.7182	yes	no
Q5E9I6	ARF3_BOVIN	No assigned EC number	0.5864	0.7869	0.7348	yes	no
P61205	ARF3_MOUSE	No assigned EC number	0.5864	0.7869	0.7348	yes	no
P61204	ARF3_HUMAN	No assigned EC number	0.5864	0.7869	0.7348	yes	no
P61206	ARF3_RAT	No assigned EC number	0.5864	0.7869	0.7348	yes	no
Q75A26	ARF_ASHGO	No assigned EC number	0.5769	0.7692	0.7182	yes	no
P61209	ARF1_DROME	No assigned EC number	0.6076	0.7692	0.7142	yes	no
P11076	ARF1_YEAST	No assigned EC number	0.5692	0.7692	0.7182	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00131058 hypothetical protein (193 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	169
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	3e-81
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-68
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	4e-68
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	1e-65
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-64
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	2e-63
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	5e-61
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	8e-60
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	1e-59
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	3e-49
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	4e-47
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	2e-44
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	6e-43
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	5e-42
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	4e-41
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	1e-30
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	9e-28
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	1e-26
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	7e-23
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	2e-21
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	1e-16
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	5e-15
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-10
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-10
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	3e-10
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	6e-10
smart00275	342	smart00275, G_alpha, G protein alpha subunit	1e-07
cd00066	315	cd00066, G-alpha, Alpha subunit of G proteins (gua	3e-07
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-05
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-05
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	4e-05
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-04
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-04
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	0.001
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	0.001
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	0.002
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	0.002
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	0.002

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score =  236 bits (605), Expect = 3e-81
 Identities = 80/126 (63%), Positives = 102/126 (80%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           FNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRERIG+A++E Q +
Sbjct: 34  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRM 93

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           + +  + ++V+LVFANKQD+  AM+  EV + LGL  L+NR W+IQ TCA  GDGLYEGL
Sbjct: 94  LNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153

Query: 147 DWLAST 152
           DWL++ 
Sbjct: 154 DWLSNN 159

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score =  204 bits (522), Expect = 1e-68
 Identities = 74/125 (59%), Positives = 94/125 (75%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           FNVE V+YKNV FTVWDVGGQ+K+RPLW+HY+ NTDGLI+VVDS DRERI +AK E   +
Sbjct: 33  FNVETVEYKNVKFTVWDVGGQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKL 92

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           + +  +  + +L+ ANKQD+ GA+T  E+ E LGL  +K R+WHIQ   A+ GDGL EGL
Sbjct: 93  LNEEELKGAPLLILANKQDLPGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGL 152

Query: 147 DWLAS 151
           DWL  
Sbjct: 153 DWLIE 157

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score =  203 bits (520), Expect = 4e-68
 Identities = 74/127 (58%), Positives = 98/127 (77%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           FNVE V YKNV FTVWDVGGQE LRPLWR+YF NTD +I+VVDS DR+RI +AK+E  A+
Sbjct: 48  FNVETVTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHAL 107

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           + +  + ++ +L+ ANKQD+ GAM+  E+ E LGL +LK+R W IQG  A+ G+GL EGL
Sbjct: 108 LNEEELADAPLLILANKQDLPGAMSEAEIRELLGLHELKDRPWEIQGCSAVTGEGLDEGL 167

Query: 147 DWLASTL 153
           DWL++ +
Sbjct: 168 DWLSNYI 174

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score =  198 bits (505), Expect = 1e-65
 Identities = 76/128 (59%), Positives = 101/128 (78%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           FNVE V+YKN+ FT+WDVGGQ+KLRPLWRHY+ NT+GLI+VVDS DRERIG A++E + +
Sbjct: 51  FNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERM 110

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           + +  + ++V+LVFANKQD+  AM+  EV E LGL  ++ R W+IQG CA    GLYEGL
Sbjct: 111 LSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGL 170

Query: 147 DWLASTLK 154
           DWL++ +K
Sbjct: 171 DWLSANIK 178

Length = 182

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score =  195 bits (496), Expect = 2e-64
 Identities = 76/130 (58%), Positives = 100/130 (76%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVE V YKN+ FTVWDVGGQ+K+RPLWRHY+ NT GLI+VVDS DR+RI +A++E  
Sbjct: 45  IGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELH 104

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            ++ +  + ++VILVFANKQD+  AM   E+ E LGL  +++R W+IQ TCA  GDGLYE
Sbjct: 105 RMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164

Query: 145 GLDWLASTLK 154
           GL WL++ LK
Sbjct: 165 GLTWLSNNLK 174

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score =  192 bits (489), Expect = 2e-63
 Identities = 77/127 (60%), Positives = 97/127 (76%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           V FNVE V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVDS DR+RI +A+QE  
Sbjct: 41  VGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELH 100

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            II D  M ++++LVFANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYE
Sbjct: 101 RIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160

Query: 145 GLDWLAS 151
           GL WL+S
Sbjct: 161 GLTWLSS 167

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score =  185 bits (472), Expect = 5e-61
 Identities = 71/126 (56%), Positives = 95/126 (75%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           FNVE V YKN+ F VWD+GGQ  +RP WR Y++NTD +IYVVDS DR+R+G +K E  A+
Sbjct: 33  FNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAM 92

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           +++  + ++V+LVFANKQDM GA++  EV E LGL +LK+R W I  T A KG+GL EG+
Sbjct: 93  LEEEELKDAVLLVFANKQDMPGALSEAEVAEKLGLSELKDRTWQIFKTSATKGEGLDEGM 152

Query: 147 DWLAST 152
           DWL +T
Sbjct: 153 DWLVNT 158

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score =  183 bits (466), Expect = 8e-60
 Identities = 73/127 (57%), Positives = 98/127 (77%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           FNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DR+R+ +A+ E   +
Sbjct: 51  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           + +  + ++V+LVFANKQD+  AM   E+ + LGL  L+ R W+IQ TCA  G+GLYEGL
Sbjct: 111 LNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL 170

Query: 147 DWLASTL 153
           DWL++ +
Sbjct: 171 DWLSNNI 177

Length = 181

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score =  182 bits (464), Expect = 1e-59
 Identities = 67/125 (53%), Positives = 89/125 (71%)

Query: 28  NVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAII 87
           NVE++ YKN+ F +WD+GGQE LR  W  Y+ NTD +I V+DS DRER+   K+E   ++
Sbjct: 50  NVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKML 109

Query: 88  KDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 147
               +  +V+LV ANKQD+KGAMTP E+ E LGL  +++  WHIQG CAL G+GL EGLD
Sbjct: 110 AHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLD 169

Query: 148 WLAST 152
           W+AS 
Sbjct: 170 WIASR 174

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score =  156 bits (396), Expect = 3e-49
 Identities = 59/126 (46%), Positives = 81/126 (64%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           FN++ VQ       VWD+GGQ K+RP WR+YF NTD LIYV+DS DR+R  +A QE   +
Sbjct: 49  FNIKNVQADGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVEL 108

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           +++  +    +LVFANKQD+  A    EV E L L D+++R WHIQ   A  G+GL EG+
Sbjct: 109 LEEEKLAGVPVLVFANKQDLLTAAPAEEVAEALNLHDIRDRSWHIQACSAKTGEGLQEGM 168

Query: 147 DWLAST 152
           +W+   
Sbjct: 169 NWVCKN 174

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score =  150 bits (382), Expect = 4e-47
 Identities = 54/124 (43%), Positives = 82/124 (66%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           FN++ ++Y      +WDVGGQ+ LR  WR+YF +TD LI+VVDS DR R+   K+E Q +
Sbjct: 48  FNIKTLEYNGYKLNIWDVGGQKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKL 107

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           + +  +  + +L+FANKQD+ GA++P E+ E L L  +K+  W I G  A+ G+ L +G+
Sbjct: 108 LVEERLAGATLLIFANKQDLPGALSPEEIREVLELDSIKSHHWRIFGCSAVTGENLLDGI 167

Query: 147 DWLA 150
           DWL 
Sbjct: 168 DWLV 171

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score =  143 bits (363), Expect = 2e-44
 Identities = 58/132 (43%), Positives = 85/132 (64%), Gaps = 8/132 (6%)

Query: 25  VRFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEF 83
           V FNVE +Q  K++  TVWDVGGQEK+R +W+ Y  NTDGL+YVVDS D  R+ ++++E 
Sbjct: 31  VGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKEL 90

Query: 84  QAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLK----NRKWHIQGTCALKG 139
           + I+K+  +    +++ ANKQD+ GA+T  E+      F LK    +R W++Q   A+ G
Sbjct: 91  KHILKNEHIKGVPVVLLANKQDLPGALTAEEITR---RFKLKKYCSDRDWYVQPCSAVTG 147

Query: 140 DGLYEGLDWLAS 151
           +GL E    LAS
Sbjct: 148 EGLAEAFRKLAS 159

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score =  140 bits (353), Expect = 6e-43
 Identities = 65/137 (47%), Positives = 97/137 (70%), Gaps = 4/137 (2%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVE V+YKN+ FT+WDVGG+ KLRPLW+HY+ NT  +++V+DS  R+R+ +A  E  
Sbjct: 31  IGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELA 90

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLY 143
            ++ +  + ++++L+FANKQD+ GA++  E+ E L L  L   R W+IQG  A  G GLY
Sbjct: 91  KLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLY 150

Query: 144 EGLDWLASTLKEMRAAG 160
           EGLDWL+   +++ AAG
Sbjct: 151 EGLDWLS---RQLVAAG 164

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score =  137 bits (347), Expect = 5e-42
 Identities = 54/130 (41%), Positives = 83/130 (63%), Gaps = 2/130 (1%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           V FNVE  +  N+ FT +D+ GQ K R LW HY+ N  G+I+V+DS DR R+  AK E +
Sbjct: 33  VGFNVESFKKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELE 92

Query: 85  AIIKDPFMLNSV--ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL 142
            ++  P + +    IL +ANK D+  A+T +++ + L L ++K++ WHI  + AL G+GL
Sbjct: 93  LLLNHPDIKHRRIPILFYANKMDLPDALTAVKITQLLCLENIKDKPWHIFASSALTGEGL 152

Query: 143 YEGLDWLAST 152
            EG+DWL + 
Sbjct: 153 DEGVDWLQAQ 162

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score =  136 bits (343), Expect = 4e-41
 Identities = 61/129 (47%), Positives = 80/129 (62%), Gaps = 6/129 (4%)

Query: 27  FNVEKVQY-----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ 81
           FN EK++      K V F  WDVGGQEKLRPLW+ Y   TDG+++VVDS+D ER+ +AK 
Sbjct: 37  FNTEKIKVSLGNAKGVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKT 96

Query: 82  EFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKN-RKWHIQGTCALKGD 140
           E   I K        +LV ANKQD+  A+   EV + L L +L +   WH+Q  CA+ G+
Sbjct: 97  ELHKITKFSENQGVPVLVLANKQDLPNALPVSEVEKLLALHELSSSTPWHVQPACAIIGE 156

Query: 141 GLYEGLDWL 149
           GL EGL+ L
Sbjct: 157 GLQEGLEKL 165

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score =  108 bits (273), Expect = 1e-30
 Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 8/130 (6%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           V  N+  ++        WD+GGQE+LR LW  Y+  + G+IYV+DS DRER  ++K  F+
Sbjct: 39  VGLNIGTIEVGKARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFE 98

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWH-----IQGTCALKG 139
            +I +  +    +LV ANKQD+  A++  E+ E   +FD            +Q   AL+G
Sbjct: 99  KVINNEALEGVPLLVLANKQDLPDALSVAEIKE---VFDDCIALIGRRDCLVQPVSALEG 155

Query: 140 DGLYEGLDWL 149
           +G+ EG++WL
Sbjct: 156 EGVEEGIEWL 165

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score =  101 bits (253), Expect = 9e-28
 Identities = 43/125 (34%), Positives = 68/125 (54%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           V FN+ KV   NV   VWD+GGQ + R +W  Y    + ++YVVD+ DRE++  AK E  
Sbjct: 32  VGFNMRKVTKGNVTIKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADREKLEVAKNELH 91

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            +++ P +    +LV  NK D+ GA++  E+ E + L  + +R+       A +   +  
Sbjct: 92  DLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISAKEKTNIDI 151

Query: 145 GLDWL 149
            LDWL
Sbjct: 152 VLDWL 156

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 99.3 bits (248), Expect = 1e-26
 Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 12/137 (8%)

Query: 26  RFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQA 85
               E++   NV FT +D+GG E+ R +W+ YF   DG++++VD+ D ER  ++K+E  +
Sbjct: 52  HPTSEELTIGNVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDS 111

Query: 86  IIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQG 133
           ++ D  + N  IL+  NK D  GA++  E+ E LGL+                R   +  
Sbjct: 112 LLNDEELANVPILILGNKIDKPGAVSEEELREALGLYGTTTGKGGVSLKVSNIRPVEVFM 171

Query: 134 TCALKGDGLYEGLDWLA 150
              +K  G  EG  WL+
Sbjct: 172 CSVVKRQGYGEGFRWLS 188

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 88.6 bits (220), Expect = 7e-23
 Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 9/134 (6%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           V F   K++       ++D+GG    R +W +Y+    GL++VVDS D +R+ + K+  +
Sbjct: 31  VGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILR 90

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRK---WHIQGTCALKGDG 141
            +++ P +    ILV ANKQD K A+   +V E L L  L N      HI+   A++G G
Sbjct: 91  ELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLG 150

Query: 142 ------LYEGLDWL 149
                 + EGL WL
Sbjct: 151 KKIDPSIVEGLRWL 164

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 84.8 bits (210), Expect = 2e-21
 Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 5/110 (4%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEF-QA 85
           FN   +  ++ I  + ++GG + LR  W+ Y + + GLI+VVDS D ER+  A+QE  Q 
Sbjct: 34  FNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQL 93

Query: 86  IIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKN-RKWHIQGT 134
           +   P +    ++V ANKQD+  A +  E+ + L L  +   R+W +QGT
Sbjct: 94  LQHPPDL---PLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGT 140

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score = 73.0 bits (179), Expect = 1e-16
 Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 7/128 (5%)

Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E++   N+ FT +D+GG ++ R LW+ YF   +G++Y+VD+ D+ER  ++K+E  A++ D
Sbjct: 54  EELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSD 113

Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQG------TCAL-KGDGL 142
             +     L+  NK D   A +  E+   LGL +    K  +         C++ +  G 
Sbjct: 114 EELATVPFLILGNKIDAPYAASEDELRYALGLTNTTTGKGKVGVRPVEVFMCSVVRRMGY 173

Query: 143 YEGLDWLA 150
            EG  WL+
Sbjct: 174 GEGFKWLS 181

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 69.2 bits (169), Expect = 5e-15
 Identities = 22/88 (25%), Positives = 41/88 (46%)

Query: 28  NVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAII 87
              +   +N+   +WD  GQE+ R L   Y+   +G++ V DS  RE   +  +E+   +
Sbjct: 45  KTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEEL 104

Query: 88  KDPFMLNSVILVFANKQDMKGAMTPMEV 115
           ++    +  IL+  NK D+    +  E 
Sbjct: 105 RELAPDDVPILLVGNKIDLFDEQSSSEE 132

Length = 219

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 10/125 (8%)

Query: 32  VQYKNVIFTVWDVGGQEKLRPLW-----RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           +    V   + D  G ++   L      R      D ++ VVDS DRE    AK      
Sbjct: 42  LDKGKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRR 101

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           ++        I++  NK D+       E          K     +    A  G+G+ E  
Sbjct: 102 LRKE---GIPIILVGNKIDLLEEREVEE--LLRLEELAKILGVPVFEVSAKTGEGVDELF 156

Query: 147 DWLAS 151
           + L  
Sbjct: 157 EKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 27  FNVEKVQYKNVIFTV--WDVGGQEKLRPLWRHYFNNTDGLIYVVDS---LDRERIGKAKQ 81
           +    ++     +     D  GQE    + R Y+   +  + V D    +        KQ
Sbjct: 39  YVTTVIEEDGKTYKFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQ 98

Query: 82  EFQAIIKDPFMLNSVILVFANKQDMKGAMTP 112
                I         I++  NK D++ A   
Sbjct: 99  TK--EIIHHAESGVPIILVGNKIDLRDAKLK 127

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 10/86 (11%)

Query: 31  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV-----DSLDRE-----RIGKAK 80
           K  +K + F ++DVGGQ   R  W H F +   +I+VV     D +  E     R+ ++ 
Sbjct: 162 KFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDDSTNRLEESL 221

Query: 81  QEFQAIIKDPFMLNSVILVFANKQDM 106
             F+ I   P+  N+ I++F NK+D+
Sbjct: 222 NLFEEICNSPWFKNTPIILFLNKKDL 247

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 55.2 bits (133), Expect = 6e-10
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 7/111 (6%)

Query: 43  DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN 102
              GQE+ + +W        G I +VDS             + I          ++V  N
Sbjct: 74  GTPGQERFKFMWEILSRGAVGAIVLVDSSR----PITFHAEEIIDFLTSRNPIPVVVAIN 129

Query: 103 KQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 153
           KQD+  A+ P ++ E      L+     +    A +G+G  + LD L    
Sbjct: 130 KQDLFDALPPEKIRE---ALKLELLSVPVIEIDATEGEGARDQLDVLLLKD 177

Length = 187

>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 10/86 (11%)

Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV-----DSLDRE-----RIGKA 79
                K + F ++DVGGQ   R  W H F+N   +I+ V     D +  E     R+ ++
Sbjct: 177 TAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQES 236

Query: 80  KQEFQAIIKDPFMLNSVILVFANKQD 105
              F++I    +  N+ I++F NK D
Sbjct: 237 LNLFESICNSRWFANTSIILFLNKID 262

Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342

>gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding)

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 31  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV-----DSLDRE-----RIGKAK 80
               KN+ F ++DVGGQ   R  W H F +   +I+VV     D +  E     R+ ++ 
Sbjct: 155 DFSIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLVEDESVNRMQESL 214

Query: 81  QEFQAIIKDPFMLNSVILVFANKQD 105
           + F +I    +  N+ I++F NK+D
Sbjct: 215 KLFDSICNSRWFANTSIILFLNKKD 239

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 13/82 (15%)

Query: 31  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI---I 87
            V  K+V   +WD  GQE+ R + R Y+    G + V D   R       + F A+   +
Sbjct: 43  NVGGKSVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR-------ESFNALTNWL 95

Query: 88  KDPFMLNS---VILVFANKQDM 106
            D   L S   VI++  NK+D+
Sbjct: 96  TDARTLASPDIVIILVGNKKDL 117

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFML- 93
           K +   +WD  GQE+   L   Y+ + DG I V D  D +   K K+  + + +   M  
Sbjct: 47  KRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQ---MRG 103

Query: 94  NSVILVFA-NKQDMK 107
           N++ LV   NK D++
Sbjct: 104 NNISLVIVGNKIDLE 118

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 26  RFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQA 85
           +    ++  K V   +WD  GQE+ R +   Y+    G+I V D  D+E     KQ  Q 
Sbjct: 40  KIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQE 99

Query: 86  IIKDPFMLNSVI-LVFANKQDMK 107
           I  D +   +V  L+  NK D+ 
Sbjct: 100 I--DRYASENVNKLLVGNKCDLT 120

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 25 VRFNVEK--VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 74
          V F +++  V  K +  T+WD  GQE+ R L   Y+ N  G+I V D   RE
Sbjct: 48 VDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRE 99

Length = 211

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 39.0 bits (92), Expect = 3e-04
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 31  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAII 87
           +V  K V   +WD  GQE+ R +   Y+    G I V D  +R   E + K   E +   
Sbjct: 43  EVDGKKVKLQIWDTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYA 102

Query: 88  KDPFMLNSVILVFANKQDM 106
                 N  I++  NK D+
Sbjct: 103 PP----NIPIILVGNKSDL 117

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 10/74 (13%)

Query: 39  FTVWDVGGQEKLRP-LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV- 96
            T+ DV G EKLR  L  +   +   +++VVDS   ++  +   EF   + D        
Sbjct: 49  LTLVDVPGHEKLRDKLLEYLKASLKAIVFVVDSATFQKNIRDVAEF---LYDILTDLEKI 105

Query: 97  -----ILVFANKQD 105
                IL+  NKQD
Sbjct: 106 KNKIPILIACNKQD 119

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           V  N E+V+ +     +WD  GQE+ R +   Y+  T G+I V D  + E     K+  Q
Sbjct: 48  VEINGERVKLQ-----IWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQ 102

Query: 85  AIIKDPFMLNSVILVFANKQD 105
            I ++   +  V++   NK D
Sbjct: 103 EIEQNCDDVCKVLV--GNKND 121

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 8/101 (7%)

Query: 25  VRFNVEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQE 82
           V F V+ V    K V   +WD  GQE+ R L   Y+    G+I V D   R+        
Sbjct: 35  VDFKVKTVTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTW 94

Query: 83  FQAIIKDPFMLNS--VILVFANKQDMKGAMTPMEVCEGLGL 121
              +  D +  N   V ++  NK D +      E  EG   
Sbjct: 95  LNEL--DTYSTNPDAVKMLVGNKIDKENREVTRE--EGQKF 131

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 32  VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RIGKAKQEFQAIIK 88
           V  + +   +WD  GQE+ R + R Y+    G + V D   R     +     + +  + 
Sbjct: 46  VNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN-LT 104

Query: 89  DPFMLNSVILVFANKQDMKG 108
           +P   N+VI +  NK D++ 
Sbjct: 105 NP---NTVIFLIGNKADLEA 121

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 41 VWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 74
          +WD  GQE+ R + R Y+ N+ G++ V D  +RE
Sbjct: 56 LWDTAGQERFRSITRSYYRNSVGVLLVFDITNRE 89

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	169
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
PLN00223	181	ADP-ribosylation factor; Provisional	100.0
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	100.0
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	100.0
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	100.0
PTZ00133	182	ADP-ribosylation factor; Provisional	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	100.0
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	100.0
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	100.0
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	100.0
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.98
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.98
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.98
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.98
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.98
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.98
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.98
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.98
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.97
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.97
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.97
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.97
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.97
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.97
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.97
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.97
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.97
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.97
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.97
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.97
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.97
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.97
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.97
PTZ00369	189	Ras-like protein; Provisional	99.97
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.97
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.97
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.97
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.97
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.97
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.97
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.97
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.97
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.97
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.97
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.97
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.97
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.97
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.97
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.97
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.97
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.97
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.97
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.97
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.96
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.96
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.96
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.96
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.96
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.96
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.96
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.96
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.96
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.96
PLN03110	216	Rab GTPase; Provisional	99.96
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.96
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.96
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.96
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.96
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.96
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.96
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.96
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.96
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.96
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.96
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.96
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.96
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.96
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.96
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.95
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.95
PLN03118	211	Rab family protein; Provisional	99.95
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.95
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.95
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.95
PTZ00099	176	rab6; Provisional	99.95
PLN03108	210	Rab family protein; Provisional	99.95
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.95
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.95
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.95
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.95
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.95
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.95
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.95
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.95
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.95
KOG0395	196	consensus Ras-related GTPase [General function pre	99.95
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.95
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.95
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.94
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.94
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.94
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.94
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.94
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.94
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.94
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.94
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.93
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.93
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.93
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.93
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.93
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.93
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.92
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.91
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.91
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.91
PRK12299	335	obgE GTPase CgtA; Reviewed	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.89
PLN00023	334	GTP-binding protein; Provisional	99.89
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.89
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.89
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.89
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.89
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.88
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.88
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.88
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.88
PRK03003	472	GTP-binding protein Der; Reviewed	99.88
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.88
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.87
cd00881	189	GTP_translation_factor GTP translation factor fami	99.87
PRK15494	339	era GTPase Era; Provisional	99.86
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.86
PRK03003	472	GTP-binding protein Der; Reviewed	99.86
COG1100	219	GTPase SAR1 and related small G proteins [General	99.86
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.86
PRK04213	201	GTP-binding protein; Provisional	99.86
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.86
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.85
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.85
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.85
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.85
PRK12296	500	obgE GTPase CgtA; Reviewed	99.85
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.84
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.84
PRK12297	424	obgE GTPase CgtA; Reviewed	99.84
PRK11058	426	GTPase HflX; Provisional	99.83
COG2229	187	Predicted GTPase [General function prediction only	99.83
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.83
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.83
KOG1673	205	consensus Ras GTPases [General function prediction	99.82
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.82
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.82
PRK00093	435	GTP-binding protein Der; Reviewed	99.82
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.82
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.81
PRK05306	787	infB translation initiation factor IF-2; Validated	99.81
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.81
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.81
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.81
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.81
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.8
PRK00093	435	GTP-binding protein Der; Reviewed	99.8
PRK05433	600	GTP-binding protein LepA; Provisional	99.8
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.79
PRK12298	390	obgE GTPase CgtA; Reviewed	99.79
CHL00189	742	infB translation initiation factor 2; Provisional	99.79
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.79
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.79
PRK00089	292	era GTPase Era; Reviewed	99.78
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.78
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.78
PRK10218	607	GTP-binding protein; Provisional	99.77
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.77
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.77
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.76
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.75
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.75
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.75
COG1160	444	Predicted GTPases [General function prediction onl	99.74
PRK12317	425	elongation factor 1-alpha; Reviewed	99.74
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.73
KOG0090	238	consensus Signal recognition particle receptor, be	99.72
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.72
PRK04004	586	translation initiation factor IF-2; Validated	99.72
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.72
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.71
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.7
COG1159	298	Era GTPase [General function prediction only]	99.7
PRK13351	687	elongation factor G; Reviewed	99.7
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.69
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.69
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.69
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.68
COG0486	454	ThdF Predicted GTPase [General function prediction	99.67
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.66
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.66
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.65
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.64
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.64
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.64
COG1160	444	Predicted GTPases [General function prediction onl	99.63
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.63
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.62
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.62
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.62
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.61
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.61
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.6
PRK12736	394	elongation factor Tu; Reviewed	99.6
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.6
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.59
PRK12740	668	elongation factor G; Reviewed	99.59
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.59
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.58
PRK12735	396	elongation factor Tu; Reviewed	99.58
KOG1145	683	consensus Mitochondrial translation initiation fac	99.58
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.58
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.57
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.57
PRK14845	1049	translation initiation factor IF-2; Provisional	99.55
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.55
COG2262	411	HflX GTPases [General function prediction only]	99.54
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.53
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.53
CHL00071	409	tufA elongation factor Tu	99.53
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.52
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.52
PTZ00141	446	elongation factor 1- alpha; Provisional	99.51
PLN00043	447	elongation factor 1-alpha; Provisional	99.5
PRK00049	396	elongation factor Tu; Reviewed	99.5
PRK12739	691	elongation factor G; Reviewed	99.49
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.48
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.48
COG1084	346	Predicted GTPase [General function prediction only	99.47
PLN03126	478	Elongation factor Tu; Provisional	99.47
PLN03127	447	Elongation factor Tu; Provisional	99.46
PRK00007	693	elongation factor G; Reviewed	99.45
COG0218	200	Predicted GTPase [General function prediction only	99.45
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.45
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.41
COG0536	369	Obg Predicted GTPase [General function prediction	99.41
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.41
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.4
COG1163	365	DRG Predicted GTPase [General function prediction	99.37
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.35
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.32
PRK09602	396	translation-associated GTPase; Reviewed	99.31
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.29
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.28
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.25
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.25
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.24
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.24
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.23
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.22
PRK12289	352	GTPase RsgA; Reviewed	99.22
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.2
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.16
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.16
PRK13768	253	GTPase; Provisional	99.15
PRK09866	741	hypothetical protein; Provisional	99.13
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.13
PRK12288	347	GTPase RsgA; Reviewed	99.1
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.1
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.09
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.06
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.06
PRK07560	731	elongation factor EF-2; Reviewed	99.06
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.03
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.02
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.02
COG3596	296	Predicted GTPase [General function prediction only	99.01
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.0
PTZ00416	836	elongation factor 2; Provisional	99.0
PRK00098	298	GTPase RsgA; Reviewed	98.98
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.98
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.96
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.95
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.94
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.93
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.88
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.86
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.83
PTZ00258	390	GTP-binding protein; Provisional	98.83
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	98.82
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	98.8
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.79
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.79
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.79
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	98.79
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.78
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.77
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.76
KOG0461	522	consensus Selenocysteine-specific elongation facto	98.74
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.72
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.69
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.66
PRK13796	365	GTPase YqeH; Provisional	98.62
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.6
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.57
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.51
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.5
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.49
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.48
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.45
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	98.44
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.43
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.39
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.33
PRK01889	356	GTPase RsgA; Reviewed	98.32
KOG0410	410	consensus Predicted GTP binding protein [General f	98.31
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.26
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.25
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.22
PRK09601	364	GTP-binding protein YchF; Reviewed	98.22
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.22
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.21
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.18
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.15
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.04
COG1162	301	Predicted GTPases [General function prediction onl	98.03
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.02
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.01
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.94
COG5258	527	GTPBP1 GTPase [General function prediction only]	97.9
KOG0460	449	consensus Mitochondrial translation elongation fac	97.87
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	97.86
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.7
KOG0466	466	consensus Translation initiation factor 2, gamma s	97.6
COG5019	373	CDC3 Septin family protein [Cell division and chro	97.52
COG0012	372	Predicted GTPase, probable translation factor [Tra	97.47
cd03111	106	CpaE_like This protein family consists of proteins	97.46
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	97.43
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.38
KOG2486	320	consensus Predicted GTPase [General function predi	97.31
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	97.3
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.29
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.29
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	97.22
KOG1143	591	consensus Predicted translation elongation factor	97.12
COG3523	1188	IcmF Type VI protein secretion system component Va	97.12
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.09
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	96.98
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	96.96
COG0523	323	Putative GTPases (G3E family) [General function pr	96.91
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	96.89
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	96.86
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.84
PRK09563	287	rbgA GTPase YlqF; Reviewed	96.76
PRK10416	318	signal recognition particle-docking protein FtsY;	96.74
COG1161	322	Predicted GTPases [General function prediction onl	96.73
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.73
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	96.72
PRK12288	347	GTPase RsgA; Reviewed	96.69
PRK14974	336	cell division protein FtsY; Provisional	96.59
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.48
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	96.36
COG1161	322	Predicted GTPases [General function prediction onl	96.32
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	96.22
PRK12289	352	GTPase RsgA; Reviewed	96.19
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	96.18
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	96.15
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	96.1
cd03110	179	Fer4_NifH_child This protein family's function is	96.03
PRK11537	318	putative GTP-binding protein YjiA; Provisional	96.01
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	95.96
PRK13796	365	GTPase YqeH; Provisional	95.94
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	95.94
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	95.92
KOG2423	572	consensus Nucleolar GTPase [General function predi	95.92
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	95.82
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	95.68
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	95.41
COG1162	301	Predicted GTPases [General function prediction onl	95.31
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	95.28
PRK00098	298	GTPase RsgA; Reviewed	95.25
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	94.74
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	94.65
KOG2484	435	consensus GTPase [General function prediction only	94.43
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	94.31
PRK13695	174	putative NTPase; Provisional	94.26
PF05729	166	NACHT: NACHT domain	94.03
PRK10867	433	signal recognition particle protein; Provisional	93.98
KOG3929	363	consensus Uncharacterized conserved protein [Funct	93.85
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	93.32
TIGR00064	272	ftsY signal recognition particle-docking protein F	93.23
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	93.2
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	93.19
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	92.89
cd02036	179	MinD Bacterial cell division requires the formatio	92.72
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	92.54
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	92.4
KOG0780	483	consensus Signal recognition particle, subunit Srp	92.05
cd03116	159	MobB Molybdenum is an essential trace element in t	92.04
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	91.86
COG0411	250	LivG ABC-type branched-chain amino acid transport	91.23
cd03114	148	ArgK-like The function of this protein family is u	91.21
PF00005	137	ABC_tran: ABC transporter This structure is on hol	91.2
cd03112	158	CobW_like The function of this protein family is u	91.15
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	91.01
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	90.73
PF13555	62	AAA_29: P-loop containing region of AAA domain	90.7
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	90.53
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	90.46
COG1149	284	MinD superfamily P-loop ATPase containing an inser	90.4
PHA02518	211	ParA-like protein; Provisional	90.26
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	89.88
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	89.87
KOG4273	418	consensus Uncharacterized conserved protein [Funct	89.71
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	89.27
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	89.25
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	88.94
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	88.77
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	88.73
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	88.69
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	88.48
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	88.44
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	88.18
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	88.12
cd03215	182	ABC_Carb_Monos_II This family represents domain II	88.11
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	88.02
PRK13849	231	putative crown gall tumor protein VirC1; Provision	87.96
cd03269	210	ABC_putative_ATPase This subfamily is involved in	87.95
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	87.95
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	87.94
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	87.8
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	87.77
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	87.74
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	87.71
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	87.61
COG3911	183	Predicted ATPase [General function prediction only	87.57
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	87.48
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	87.47
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	87.44
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	87.42
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	87.39
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	87.32
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	87.32
cd03216	163	ABC_Carb_Monos_I This family represents the domain	87.26
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	87.2
smart00382	148	AAA ATPases associated with a variety of cellular	87.16
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	87.13
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	87.1
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	87.1
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	87.07
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	86.94
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	86.87
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	86.75
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	86.65
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	86.6
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	86.56
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	86.49
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	86.49
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	86.47
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	86.45
PRK07261	171	topology modulation protein; Provisional	86.35
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	86.31
PTZ00293	211	thymidine kinase; Provisional	86.3
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	86.28
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	86.28
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	86.22
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	86.18
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	86.14
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	86.14
PRK10908	222	cell division protein FtsE; Provisional	86.12
PRK04195	482	replication factor C large subunit; Provisional	86.09
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	86.07
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	86.06
PRK01889	356	GTPase RsgA; Reviewed	85.99
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	85.95
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	85.92
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	85.89
cd02032	267	Bchl_like This family of proteins contains bchL an	85.88
cd03246	173	ABCC_Protease_Secretion This family represents the	85.88
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	85.83
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	85.8
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	85.8

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-38  Score=210.77  Aligned_cols=154  Identities=21%  Similarity=0.323  Sum_probs=128.2

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE----EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +|++..|+|||||+.||     .+.+.+|+|+++..    ++.+.++++||||+||++|+.+...||++|||+|+|||++
T Consensus        13 iliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT   92 (205)
T KOG0084|consen   13 ILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDIT   92 (205)
T ss_pred             EEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcc
Confidence            36789999999999986     78999999987754    3447899999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeE-EEEeeeccCCCHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWH-IQGTCALKGDGLYEGLDW  148 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~~  148 (169)
                      +.++|+.+..|+.++.+.. ..+.|.++||||+|+.+..  +.++ ...+    ....+++ ++|+||+++.|+++.|..
T Consensus        93 ~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~-a~~f----a~~~~~~~f~ETSAK~~~NVe~~F~~  166 (205)
T KOG0084|consen   93 KQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEE-AQEF----ADELGIPIFLETSAKDSTNVEDAFLT  166 (205)
T ss_pred             cHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhheecCHHH-HHHH----HHhcCCcceeecccCCccCHHHHHHH
Confidence            9999999999999996543 4578999999999997643  2222 2222    2334455 999999999999999999


Q ss_pred             HHHHHHhhhccc
Q 030931          149 LASTLKEMRAAG  160 (169)
Q Consensus       149 l~~~~~~~~~~~  160 (169)
                      +...+.++....
T Consensus       167 la~~lk~~~~~~  178 (205)
T KOG0084|consen  167 LAKELKQRKGLH  178 (205)
T ss_pred             HHHHHHHhcccC
Confidence            999998876443

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.8e-37  Score=203.92  Aligned_cols=153  Identities=18%  Similarity=0.273  Sum_probs=131.2

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--E--EECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--V--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      .++.+++|||||++||     ...|.+|+|+++..  +  ....+.+++|||+|||+|+.+.+.|++++.++|+|||+++
T Consensus        27 flGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~  106 (221)
T KOG0094|consen   27 FLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITD  106 (221)
T ss_pred             EEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccc
Confidence            4678999999999986     88999999988755  3  3368999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      ..+|+...+|+++.++++...+.-+++||||.||.+.   +++....+...++..+..|+++||+.|.||.++|..+...
T Consensus       107 ~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk---rqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~  183 (221)
T KOG0094|consen  107 RNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK---RQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAA  183 (221)
T ss_pred             cchHHHHHHHHHHHHhccCCCceEEEEEcccccccch---hhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHh
Confidence            9999999999999998877767999999999999764   3443333333334556679999999999999999999988


Q ss_pred             HHhhh
Q 030931          153 LKEMR  157 (169)
Q Consensus       153 ~~~~~  157 (169)
                      ++...
T Consensus       184 l~~~~  188 (221)
T KOG0094|consen  184 LPGME  188 (221)
T ss_pred             ccCcc
Confidence            88764

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.5e-36  Score=200.81  Aligned_cols=153  Identities=22%  Similarity=0.239  Sum_probs=127.8

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +||+..++|||||+.||     .+...||+|.-+.+  +..  ..+++.||||+||++|.++.+.||++|+++|+|||++
T Consensus         9 vLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit   88 (200)
T KOG0092|consen    9 VLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDIT   88 (200)
T ss_pred             EEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecc
Confidence            47889999999999987     55668999955543  444  4599999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG--AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      +.+||...+.|+.++-+... +++-+.+||||+|+.+  +++.++...     ..++.+..|+|+||++|.|++++|..|
T Consensus        89 ~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~-----yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   89 DEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQA-----YAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             cHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHH-----HHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999866543 7889999999999987  334444322     224566779999999999999999999


Q ss_pred             HHHHHhhhcc
Q 030931          150 ASTLKEMRAA  159 (169)
Q Consensus       150 ~~~~~~~~~~  159 (169)
                      .+.+++....
T Consensus       163 a~~lp~~~~~  172 (200)
T KOG0092|consen  163 AEKLPCSDPQ  172 (200)
T ss_pred             HHhccCcccc
Confidence            9999887543

>PLN00223 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=5.9e-35  Score=201.21  Aligned_cols=155  Identities=48%  Similarity=0.893  Sum_probs=135.6

Q ss_pred             ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+++|||||++++.    ..+.||+++++..++..++.+++||+||+++++.+|..+++++|++|+|||+++++++.
T Consensus        22 ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~  101 (181)
T PLN00223         22 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVV  101 (181)
T ss_pred             EECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHH
Confidence            56799999999999873    34678999988888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      ....++..++.....++.|+++++||+|+.+....+++.+.++......+.+.+++|||++|+|+.++|+|+.+.+.++
T Consensus       102 ~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        102 EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhhc
Confidence            9998888887655556899999999999988777788888887665555667788999999999999999999887654

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=100.00  E-value=2.1e-34  Score=197.59  Aligned_cols=152  Identities=51%  Similarity=0.913  Sum_probs=133.1

Q ss_pred             ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+|+|||||++++    ...+.||++.++..+..+.+.+++|||||++++..+|..++++++++|+|||++++++++
T Consensus        18 l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~   97 (175)
T smart00177       18 MVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRID   97 (175)
T ss_pred             EEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHH
Confidence            6779999999999987    234678999888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                      ....|+..++.....++.|+++|+||+|+.+..+.+++.+.++......+.+.++++||++|.|+.++|+||...+
T Consensus        98 ~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177       98 EAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            9999999887654456799999999999987667778888777665566677788999999999999999998765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04149 Arf6 Arf6 subfamily

Probab=100.00  E-value=4.2e-34  Score=194.86  Aligned_cols=150  Identities=53%  Similarity=0.919  Sum_probs=128.9

Q ss_pred             ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+++|||||++++.    ..+.||++.+...+...++++++|||||++++..++..+++++|++|+|||++++.+|.
T Consensus        14 i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~   93 (168)
T cd04149          14 MLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRID   93 (168)
T ss_pred             EECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHH
Confidence            56799999999999872    34678889888777888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ....|+.++++....++.|+++|+||+|+.+....+++.+.++........+.++++||++|.|+.++|+||.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149          94 EARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             HHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence            99999988877544567999999999999776667777777665544555678999999999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=100.00  E-value=5.8e-34  Score=192.55  Aligned_cols=150  Identities=55%  Similarity=0.967  Sum_probs=128.1

Q ss_pred             ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+++|||||++++    ...+.||++++...+....+.+.+||+||++++..++..+++++|++++|||++++.++.
T Consensus         5 ~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~   84 (159)
T cd04150           5 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIG   84 (159)
T ss_pred             EECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHH
Confidence            5679999999999987    234678999888778888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ...+|+..++......+.|+++++||+|+.+....+++...+++.....+.+.++++||++|.|++++|+||..
T Consensus        85 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150          85 EAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             HHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            99998888876544457899999999999765555666666665555556677899999999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=1.5e-33  Score=194.44  Aligned_cols=156  Identities=50%  Similarity=0.902  Sum_probs=134.5

Q ss_pred             ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      |++.+++|||||++++.    ..+.||++.++..++..++.+++|||||+++++.++..+++++|++|+|||+++++++.
T Consensus        22 lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~  101 (182)
T PTZ00133         22 MVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIG  101 (182)
T ss_pred             EEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHH
Confidence            56799999999999872    23568999888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      ....++..++......+.|+++|+||.|+.+....+++...++...+..+.+.++++||++|.|+.++|+|+.+.+.++.
T Consensus       102 ~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~  181 (182)
T PTZ00133        102 DAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKSM  181 (182)
T ss_pred             HHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHhc
Confidence            99888888876544457899999999999876667777777777655666677889999999999999999998877653

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-34  Score=196.48  Aligned_cols=152  Identities=18%  Similarity=0.278  Sum_probs=125.7

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EE--ECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQ--YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      |++..|+|||||+.||     ...+..|+|+++..  +.  ...+++++|||+||++|+.+...|+++|+++++|||+++
T Consensus        17 liGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitn   96 (207)
T KOG0078|consen   17 LIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITN   96 (207)
T ss_pred             EECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccc
Confidence            5679999999999986     67888999977643  33  367999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      ..+|+.+..|+..+-++. ..++|+++||||+|+....   ++....+...+...++.++|+||++|.||.+.|-.+++.
T Consensus        97 e~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK~D~~~~R---~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~  172 (207)
T KOG0078|consen   97 EKSFENIRNWIKNIDEHA-SDDVVKILVGNKCDLEEKR---QVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARD  172 (207)
T ss_pred             hHHHHHHHHHHHHHHhhC-CCCCcEEEeeccccccccc---cccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHH
Confidence            999999999999986543 3589999999999997632   222222222234456679999999999999999999999


Q ss_pred             HHhhh
Q 030931          153 LKEMR  157 (169)
Q Consensus       153 ~~~~~  157 (169)
                      +.++.
T Consensus       173 i~~k~  177 (207)
T KOG0078|consen  173 ILQKL  177 (207)
T ss_pred             HHhhc
Confidence            98754

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=4.1e-34  Score=199.61  Aligned_cols=151  Identities=16%  Similarity=0.205  Sum_probs=119.6

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++..|+|||||++||     .+.+.||++..+  ..+..+  .+++++|||+|+++|..++..++++++++|+|||++
T Consensus         4 vvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvt   83 (202)
T cd04120           4 IIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDIT   83 (202)
T ss_pred             EEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECc
Confidence            36789999999999976     456778887654  345554  488999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++++|+.+..|+..+.+. ...+.|+++||||+|+.+..  ...+. ..+..   ...++.|++|||++|.||+++|+++
T Consensus        84 d~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~-~~~a~---~~~~~~~~etSAktg~gV~e~F~~l  158 (202)
T cd04120          84 KKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQG-EKFAQ---QITGMRFCEASAKDNFNVDEIFLKL  158 (202)
T ss_pred             CHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHH-HHHHH---hcCCCEEEEecCCCCCCHHHHHHHH
Confidence            999999999999876443 34579999999999996432  22221 11110   1124579999999999999999999


Q ss_pred             HHHHHhh
Q 030931          150 ASTLKEM  156 (169)
Q Consensus       150 ~~~~~~~  156 (169)
                      +..+.+.
T Consensus       159 ~~~~~~~  165 (202)
T cd04120         159 VDDILKK  165 (202)
T ss_pred             HHHHHHh
Confidence            9988664

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.5e-33  Score=184.84  Aligned_cols=154  Identities=54%  Similarity=0.962  Sum_probs=143.7

Q ss_pred             cccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHH
Q 030931            3 RVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK   78 (169)
Q Consensus         3 ~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~   78 (169)
                      ++=+++||||+++++    .-.+.||+|+++..+.++++.+++||.+||++++..|+.|++..+++|||+|.+|++++..
T Consensus        23 lGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~e  102 (181)
T KOG0070|consen   23 VGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEE  102 (181)
T ss_pred             EeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHH
Confidence            456899999999987    2344999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931           79 AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus        79 ~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      .+..+..++.+...++.|+++++||.|++++.+..++.+.+++..+..+.+.+..|+|.+|+|+.+.++|+...+..+
T Consensus       103 ak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  103 AKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhcc
Confidence            999999999988788999999999999999999999999999998889999999999999999999999999887654

>cd04158 ARD1 ARD1 subfamily

Probab=100.00  E-value=7.7e-33  Score=188.83  Aligned_cols=157  Identities=42%  Similarity=0.740  Sum_probs=131.1

Q ss_pred             CccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931            1 MLRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI   76 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~   76 (169)
                      ++++.+++|||||++++.    ..+.||++.++..+++.++.+++|||||++++..++..+++.+|++++|+|+++++++
T Consensus         3 vlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~   82 (169)
T cd04158           3 VTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRV   82 (169)
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHH
Confidence            367899999999999872    3478899988888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC-CCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931           77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLASTLKE  155 (169)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  155 (169)
                      ..+..|+..+++.....+.|+++|+||+|+.+..+.+++.+.+..... ..+.+.+++|||++|.|+.++|+|+++.+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~  162 (169)
T cd04158          83 SEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA  162 (169)
T ss_pred             HHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence            999999999987544457899999999999766666666555443222 1234578899999999999999999987766


Q ss_pred             hh
Q 030931          156 MR  157 (169)
Q Consensus       156 ~~  157 (169)
                      ..
T Consensus       163 ~~  164 (169)
T cd04158         163 AG  164 (169)
T ss_pred             cc
Confidence            53

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-34  Score=191.50  Aligned_cols=155  Identities=21%  Similarity=0.298  Sum_probs=131.0

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE----EEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV----EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +.+..|+|||+|+.||     .+.+..|+|+.+    .+++.+.++++||||+||+.|++....||++|.++++|||+++
T Consensus        11 iiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~   90 (216)
T KOG0098|consen   11 IIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITR   90 (216)
T ss_pred             EECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccc
Confidence            5679999999999976     667778898765    3456689999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      +++|..+..|+.++.... .+++.++++|||+|+....   ++.++.+..+++..+..++++||++++|+++.|......
T Consensus        91 r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR---~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~  166 (216)
T KOG0098|consen   91 RESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARR---EVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKE  166 (216)
T ss_pred             hhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccc---cccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHH
Confidence            999999999999997643 4789999999999996542   344444434445667789999999999999999999998


Q ss_pred             HHhhhccc
Q 030931          153 LKEMRAAG  160 (169)
Q Consensus       153 ~~~~~~~~  160 (169)
                      +.+..+.+
T Consensus       167 Iy~~~q~g  174 (216)
T KOG0098|consen  167 IYRKIQDG  174 (216)
T ss_pred             HHHHHHhc
Confidence            88876554

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.1e-33  Score=195.77  Aligned_cols=150  Identities=13%  Similarity=0.164  Sum_probs=121.0

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+|+|||||+++|     .+.+.||.+..+  ..+..  ..+.+++|||+|++++..++..+++++|++|+|||++
T Consensus        10 vviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t   89 (189)
T cd04121          10 LLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDIT   89 (189)
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECc
Confidence            46789999999999987     344556766544  33444  3588999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++.+|+.+..|++++.+..  ++.|+++||||+|+...  .+.++... +    .+..+++|++|||++|.||+++|+++
T Consensus        90 ~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~-~----a~~~~~~~~e~SAk~g~~V~~~F~~l  162 (189)
T cd04121          90 NRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQA-Y----AERNGMTFFEVSPLCNFNITESFTEL  162 (189)
T ss_pred             CHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHH-H----HHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999996543  58999999999999653  23222221 2    13445679999999999999999999


Q ss_pred             HHHHHhhh
Q 030931          150 ASTLKEMR  157 (169)
Q Consensus       150 ~~~~~~~~  157 (169)
                      ++.+...+
T Consensus       163 ~~~i~~~~  170 (189)
T cd04121         163 ARIVLMRH  170 (189)
T ss_pred             HHHHHHhc
Confidence            98887654

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=1.2e-32  Score=188.68  Aligned_cols=152  Identities=40%  Similarity=0.735  Sum_probs=139.9

Q ss_pred             ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++-++||||||++++    ...+.||.|++...+.+.++.+.+||.+|+..++..|+.++++++++|||+|.++.+++.
T Consensus        19 ilGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~   98 (175)
T PF00025_consen   19 ILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQ   98 (175)
T ss_dssp             EEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHH
T ss_pred             EECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEecccceeec
Confidence            5678999999999976    356889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCC-CceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLK-NRKWHIQGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                      .....+..++......+.|+++++||+|++++.+.+++...+....+. .+.+.++.|||.+|+|+.+.|+||.+.+
T Consensus        99 e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen   99 EAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             ccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence            999999999987777799999999999999888889998888877765 7788999999999999999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=100.00  E-value=1.4e-32  Score=178.78  Aligned_cols=155  Identities=35%  Similarity=0.654  Sum_probs=144.6

Q ss_pred             ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++=++||||+|+++|    .+...||.|++..++.++++.+++||++||..+++.|+.||.++||+|+|+|++|+.+++
T Consensus        21 iLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~  100 (185)
T KOG0073|consen   21 ILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQ  100 (185)
T ss_pred             EEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHH
Confidence            3557899999999998    567789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC-CCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      +....++.++.+....+.|+++++||.|++.+.+.+++...+++..+ ++.+++.+.|||.+|+++.+.++|++..+.++
T Consensus       101 e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  101 ECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence            99999999998877889999999999999988999999988888777 78899999999999999999999999988874

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=3.4e-34  Score=189.80  Aligned_cols=156  Identities=13%  Similarity=0.169  Sum_probs=128.5

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE----EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++..|.|||||+++|     ...+..|+|..+.+    ++...+.++||||+||++|+++...++++||++++|||++
T Consensus        13 iiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~   92 (210)
T KOG0394|consen   13 IILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN   92 (210)
T ss_pred             EEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecC
Confidence            36789999999999964     88999999977655    3446799999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCC---CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC-CCceeEEEEeeeccCCCHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPF---MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                      ++.+|+.+..|..+++....   ....|.+++|||+|+.+..+ +.+.....+.+. .+.+++|||+|||...||.+.|.
T Consensus        93 ~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~-r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe  171 (210)
T KOG0394|consen   93 NPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKS-RQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFE  171 (210)
T ss_pred             ChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcc-ceeeHHHHHHHHHhcCCceeEEecccccccHHHHHH
Confidence            99999999999999988543   23589999999999965321 222222333333 35578999999999999999999


Q ss_pred             HHHHHHHhhh
Q 030931          148 WLASTLKEMR  157 (169)
Q Consensus       148 ~l~~~~~~~~  157 (169)
                      .+.+.+.+..
T Consensus       172 ~ia~~aL~~E  181 (210)
T KOG0394|consen  172 EIARRALANE  181 (210)
T ss_pred             HHHHHHHhcc
Confidence            9998877754

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=100.00  E-value=2e-32  Score=186.40  Aligned_cols=150  Identities=29%  Similarity=0.472  Sum_probs=130.8

Q ss_pred             ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+|+|||||++++    ...+.||+++....+..+++.+++||+||+++++.+|..++++++++|+|||+++..++.
T Consensus         4 ~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~   83 (167)
T cd04161           4 TVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQ   83 (167)
T ss_pred             EECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHH
Confidence            5779999999999976    557789999888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCC---CceeEEEEeeeccC------CCHHHHHHH
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLK---NRKWHIQGTCALKG------DGLYEGLDW  148 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~------~gi~~~~~~  148 (169)
                      .+..|+..+++.....+.|+++|+||+|+.+..+..++.+.+....+.   ...+++++|||++|      .|+.+.|+|
T Consensus        84 ~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~w  163 (167)
T cd04161          84 EVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRW  163 (167)
T ss_pred             HHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHH
Confidence            999999999876555689999999999998877777777776655432   23567888999998      899999999


Q ss_pred             HHH
Q 030931          149 LAS  151 (169)
Q Consensus       149 l~~  151 (169)
                      |..
T Consensus       164 l~~  166 (167)
T cd04161         164 LLA  166 (167)
T ss_pred             Hhc
Confidence            975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=2e-33  Score=192.48  Aligned_cols=153  Identities=14%  Similarity=0.138  Sum_probs=118.7

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE-EE--ECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-VQ--YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+|+|||||+.+|     .+.+.||++..+.. +.  ...++++||||+|++++..++..++++++++|+|||+++
T Consensus         5 vv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~   84 (176)
T cd04133           5 VTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLIS   84 (176)
T ss_pred             EEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCC
Confidence            46789999999999976     56788999865532 22  356899999999999999999999999999999999999


Q ss_pred             hhhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-------HhHHHhhhCCCCCCCcee-EEEEeeeccCCCHH
Q 030931           73 RERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-------PMEVCEGLGLFDLKNRKW-HIQGTCALKGDGLY  143 (169)
Q Consensus        73 ~~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~  143 (169)
                      +++|+.+ ..|+.++.+..  ++.|+++||||+|+.+...       ...+....+.......+. .|+||||++|.||+
T Consensus        85 ~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~  162 (176)
T cd04133          85 RASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVK  162 (176)
T ss_pred             HHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHH
Confidence            9999998 68999886543  4799999999999964311       001111111111233344 59999999999999


Q ss_pred             HHHHHHHHHHHh
Q 030931          144 EGLDWLASTLKE  155 (169)
Q Consensus       144 ~~~~~l~~~~~~  155 (169)
                      ++|+.+++.+.+
T Consensus       163 ~~F~~~~~~~~~  174 (176)
T cd04133         163 AVFDAAIKVVLQ  174 (176)
T ss_pred             HHHHHHHHHHhc
Confidence            999999987643

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=100.00  E-value=3.1e-32  Score=184.99  Aligned_cols=149  Identities=28%  Similarity=0.481  Sum_probs=127.6

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhh
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER   75 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~   75 (169)
                      ++++.+|+|||||+++|     .+.+.||+++....++.+++++.+||++|+++++.++..+++++|++++|||.+++.+
T Consensus         3 ~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s   82 (164)
T cd04162           3 LVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSER   82 (164)
T ss_pred             EEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH
Confidence            36789999999999976     4567899998887888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC-CCceeEEEEeeecc------CCCHHHHHHH
Q 030931           76 IGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALK------GDGLYEGLDW  148 (169)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~------~~gi~~~~~~  148 (169)
                      +.....|+..++...  ++.|+++|+||+|+.+.....++...++.... ..+++++++|||++      ++|++++|+.
T Consensus        83 ~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~  160 (164)
T cd04162          83 LPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQ  160 (164)
T ss_pred             HHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHH
Confidence            999999998886543  58999999999999877666666555554444 45678899999998      9999999998


Q ss_pred             HHH
Q 030931          149 LAS  151 (169)
Q Consensus       149 l~~  151 (169)
                      ++.
T Consensus       161 ~~~  163 (164)
T cd04162         161 LIN  163 (164)
T ss_pred             Hhc
Confidence            763

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04157 Arl6 Arl6 subfamily

Probab=100.00  E-value=4.7e-32  Score=183.37  Aligned_cols=150  Identities=36%  Similarity=0.641  Sum_probs=125.1

Q ss_pred             ccccCCCCCceeeeece------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhh
Q 030931            2 LRVKQPYCTSCTLVKFY------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER   75 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~   75 (169)
                      +++.+++|||||++++.      +.+.||+++....+..+++.+++|||||++++..++..+++.++++|+|+|+++..+
T Consensus         4 ~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~   83 (162)
T cd04157           4 VVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLR   83 (162)
T ss_pred             EECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHH
Confidence            67899999999999773      346788888777777889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           76 IGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        76 ~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      +.....|+..+++...  ..+.|+++|+||+|+.+.....++...+.........++++++||++|.|++++|+|+.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157          84 LVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             HHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence            9988888888866432  247999999999999766555666665554433344567999999999999999999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04154 Arl2 Arl2 subfamily

Probab=100.00  E-value=3.2e-32  Score=186.38  Aligned_cols=150  Identities=35%  Similarity=0.697  Sum_probs=127.7

Q ss_pred             ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+|+|||||++++    ...+.||+++....+..+.+.+.+|||||++.+..++..++++++++++|||++++.++.
T Consensus        19 ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~   98 (173)
T cd04154          19 ILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLD   98 (173)
T ss_pred             EECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHH
Confidence            5679999999999987    345678888877778888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ....|+..++......+.|+++|+||+|+.+....+++.+.+.........++++++||++|.|++++|+++..
T Consensus        99 ~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154          99 DCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             HHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence            99999988876544568999999999999766666666666654433456778999999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=4.3e-33  Score=193.51  Aligned_cols=155  Identities=17%  Similarity=0.186  Sum_probs=119.5

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE---EEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++..|+|||||++||     .+.+.||++..+.   .++...+.+++|||+|+++|..+++.+++++|++|+|||+++
T Consensus         7 ~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~   86 (191)
T cd01875           7 VVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIAS   86 (191)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCC
Confidence            36789999999999976     5678899986554   233356899999999999999999999999999999999999


Q ss_pred             hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCCCCCce-eEEEEeeeccCCC
Q 030931           73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---------LFDLKNRK-WHIQGTCALKGDG  141 (169)
Q Consensus        73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~Sa~~~~g  141 (169)
                      +.+|+.+. .|...+....  ++.|+++||||+|+.+.....+......         .......+ ++|++|||++|+|
T Consensus        87 ~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~  164 (191)
T cd01875          87 PSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDG  164 (191)
T ss_pred             HHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCC
Confidence            99999997 5877765432  5799999999999965422111111110         00112223 5799999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 030931          142 LYEGLDWLASTLKEMR  157 (169)
Q Consensus       142 i~~~~~~l~~~~~~~~  157 (169)
                      |+++|.++++.+..+.
T Consensus       165 v~e~f~~l~~~~~~~~  180 (191)
T cd01875         165 VKEVFAEAVRAVLNPT  180 (191)
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999999887653

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=100.00  E-value=1.7e-31  Score=170.98  Aligned_cols=154  Identities=26%  Similarity=0.488  Sum_probs=144.7

Q ss_pred             ccccCCCCCceeeee-----ceeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931            2 LRVKQPYCTSCTLVK-----FYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI   76 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~-----f~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~   76 (169)
                      |++=|.||||||++.     |.+...||+|++.+.+..+.+.+.+||.|||.+|+.+|..|+++++++++|+|+.+++..
T Consensus        25 lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~  104 (186)
T KOG0075|consen   25 LVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKL  104 (186)
T ss_pred             EEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccc
Confidence            456789999999994     578889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931           77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE  155 (169)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  155 (169)
                      ...+..+..++..+...++|++++|||.|++++.+..++.+++++..+..+.+-+|.+|+++..||+-+.+|+.++-..
T Consensus       105 ~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk~  183 (186)
T KOG0075|consen  105 EASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSKS  183 (186)
T ss_pred             hhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhhh
Confidence            9999999999998888899999999999999999999999999999999999999999999999999999999986543

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=5.2e-33  Score=190.16  Aligned_cols=151  Identities=14%  Similarity=0.153  Sum_probs=120.2

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||+++|     .+.+.||++..+. .+..  ..+.+++|||+|++++..++..++++++++|+|||++++
T Consensus         7 vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~   86 (172)
T cd04141           7 MLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDR   86 (172)
T ss_pred             EECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCch
Confidence            6789999999999876     4667788885543 3333  457899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      .+|+.+..|...+.+.....+.|+++|+||+|+.+..  +.++.. .+    .+..+++|++|||++|.||+++|++++.
T Consensus        87 ~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~----a~~~~~~~~e~Sa~~~~~v~~~f~~l~~  161 (172)
T cd04141          87 HSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGR-NL----AREFNCPFFETSAALRHYIDDAFHGLVR  161 (172)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHH-HH----HHHhCCEEEEEecCCCCCHHHHHHHHHH
Confidence            9999999887766543334579999999999986432  222211 11    2334578999999999999999999999


Q ss_pred             HHHhhh
Q 030931          152 TLKEMR  157 (169)
Q Consensus       152 ~~~~~~  157 (169)
                      .+.+..
T Consensus       162 ~~~~~~  167 (172)
T cd04141         162 EIRRKE  167 (172)
T ss_pred             HHHHhc
Confidence            887654

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.1e-33  Score=179.19  Aligned_cols=151  Identities=17%  Similarity=0.216  Sum_probs=125.6

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEE--ECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQ--YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|.|||||+.+|     +..|..|+|+++  .+++  ...++++|||++|+++|+.+...|+++.+++++|||+++
T Consensus        13 IigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn   92 (198)
T KOG0079|consen   13 IIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTN   92 (198)
T ss_pred             eecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcc
Confidence            4668999999999986     788999999654  4444  467999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      .++|.++..|++++...+  +..|-++||||.|.++..-... ++  ...++...++++||+||+.++|++..|..|.++
T Consensus        93 ~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t-~d--Ar~~A~~mgie~FETSaKe~~NvE~mF~cit~q  167 (198)
T KOG0079|consen   93 GESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDT-ED--ARAFALQMGIELFETSAKENENVEAMFHCITKQ  167 (198)
T ss_pred             hhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeeh-HH--HHHHHHhcCchheehhhhhcccchHHHHHHHHH
Confidence            999999999999996544  6899999999999876532111 11  112234567789999999999999999999998


Q ss_pred             HHhhh
Q 030931          153 LKEMR  157 (169)
Q Consensus       153 ~~~~~  157 (169)
                      +.+.+
T Consensus       168 vl~~k  172 (198)
T KOG0079|consen  168 VLQAK  172 (198)
T ss_pred             HHHHH
Confidence            87754

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.98  E-value=6.3e-32  Score=188.36  Aligned_cols=146  Identities=17%  Similarity=0.210  Sum_probs=120.5

Q ss_pred             cccCCCCCceeeeec-----eeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            3 RVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         3 ~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      ++.+|+|||||+++|     .+.+.||+|.++.....    +.++++||||+|+++|..++..++++++++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            467899999999986     45678999877654332    578999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      .+|..+..|+.++.+..  .++|+++||||+|+.... ..++. .     .....++.|++|||++|+||.++|++++..
T Consensus        81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~-----~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~  152 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-T-----FHRKKNLQYYDISAKSNYNFEKPFLWLARK  152 (200)
T ss_pred             HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-H-----HHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999987643  589999999999985432 22211 1     123446789999999999999999999998


Q ss_pred             HHhh
Q 030931          153 LKEM  156 (169)
Q Consensus       153 ~~~~  156 (169)
                      +.+.
T Consensus       153 i~~~  156 (200)
T smart00176      153 LIGD  156 (200)
T ss_pred             HHhc
Confidence            8765

Ran is involved in the active transport of proteins through nuclear pores.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.7e-32  Score=175.61  Aligned_cols=150  Identities=18%  Similarity=0.289  Sum_probs=126.4

Q ss_pred             ccccCCCCCceeeee-----ceeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVK-----FYLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~-----f~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.-+||||++.|     |.+.+..|+|+.+..-..    +.++++||||+|+|+++.+.-.++++|.++|++||+++
T Consensus        26 iiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitN  105 (193)
T KOG0093|consen   26 IIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN  105 (193)
T ss_pred             EEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCC
Confidence            467889999999996     578999999987654222    56999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-----HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-----PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                      .++|..+..|...+... ...+.|+++|+||||+.++..     ...+.+.++        +.|||+||+.+.|++++|+
T Consensus       106 eeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LG--------fefFEtSaK~NinVk~~Fe  176 (193)
T KOG0093|consen  106 EESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQLG--------FEFFETSAKENINVKQVFE  176 (193)
T ss_pred             HHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHhC--------hHHhhhcccccccHHHHHH
Confidence            99999999999998544 456899999999999976532     233444444        4699999999999999999


Q ss_pred             HHHHHHHhhhccc
Q 030931          148 WLASTLKEMRAAG  160 (169)
Q Consensus       148 ~l~~~~~~~~~~~  160 (169)
                      .++..+.++....
T Consensus       177 ~lv~~Ic~kmses  189 (193)
T KOG0093|consen  177 RLVDIICDKMSES  189 (193)
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999876543

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.98  E-value=1.2e-32  Score=195.39  Aligned_cols=158  Identities=13%  Similarity=0.112  Sum_probs=121.2

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE-E--EECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-V--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++..|+|||||+++|     .+.+.||++..+.. +  +...+.++||||+|+++|..+++.++++|+++|+|||+++
T Consensus        17 vvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~   96 (232)
T cd04174          17 VLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR   96 (232)
T ss_pred             EEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCC
Confidence            36789999999999975     56788999866532 2  3357899999999999999999999999999999999999


Q ss_pred             hhhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCCCCCcee-EEEEeeeccCC-
Q 030931           73 RERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVCEGLGLFDLKNRKW-HIQGTCALKGD-  140 (169)
Q Consensus        73 ~~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~-  140 (169)
                      +++|+.+ ..|+..+.+..  ++.|+++||||+|+.+...         ...+....+...++..++ .|+||||++|+ 
T Consensus        97 ~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~  174 (232)
T cd04174          97 PETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEK  174 (232)
T ss_pred             hHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCc
Confidence            9999985 78998886533  5789999999999863210         011111111122234455 59999999998 


Q ss_pred             CHHHHHHHHHHHHHhhhccc
Q 030931          141 GLYEGLDWLASTLKEMRAAG  160 (169)
Q Consensus       141 gi~~~~~~l~~~~~~~~~~~  160 (169)
                      ||+++|..++..+.+...++
T Consensus       175 ~V~e~F~~~~~~~~~~~~~~  194 (232)
T cd04174         175 SIHSIFRSASLLCLNKLSPP  194 (232)
T ss_pred             CHHHHHHHHHHHHHHhcccc
Confidence            89999999999887754443

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.98  E-value=4.4e-33  Score=180.81  Aligned_cols=153  Identities=20%  Similarity=0.226  Sum_probs=128.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE----EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      |++..|+|||||+.||     .+....|+|+++..    ++...+++-||||+||++|+.+.+.||++|.++|+|||++.
T Consensus        16 lIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~   95 (209)
T KOG0080|consen   16 LIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTS   95 (209)
T ss_pred             EEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccc
Confidence            4668999999999987     45556679976543    44578999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      +++|..+..|+.++--....+++-.++||||+|....   +.+....++..+....+-++|+||++.+|+...|++++..
T Consensus        96 Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~---R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveK  172 (209)
T KOG0080|consen   96 RDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE---RVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEK  172 (209)
T ss_pred             hhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc---ccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHH
Confidence            9999999999999866666778999999999997532   3344444555556667789999999999999999999999


Q ss_pred             HHhhh
Q 030931          153 LKEMR  157 (169)
Q Consensus       153 ~~~~~  157 (169)
                      +.+-.
T Consensus       173 Ii~tp  177 (209)
T KOG0080|consen  173 IIETP  177 (209)
T ss_pred             HhcCc
Confidence            88754

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.98  E-value=1.2e-31  Score=183.67  Aligned_cols=150  Identities=46%  Similarity=0.814  Sum_probs=129.0

Q ss_pred             ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+++|||||++++.    ..+.||++.++..+....+.+.+||+||++.+...+..+++++|++++|+|+++++++.
T Consensus        20 ~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~   99 (174)
T cd04153          20 IVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLP   99 (174)
T ss_pred             EECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHH
Confidence            56799999999999872    23578888888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ....++..+++.....+.|+++++||+|+.+..+.+++.+.++........++++++||++|+|++++|++|.+
T Consensus       100 ~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         100 LTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             HHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence            88888888876554567999999999999776666777777765544556778999999999999999999964

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04151 Arl1 Arl1 subfamily

Probab=99.98  E-value=2.2e-31  Score=179.72  Aligned_cols=150  Identities=47%  Similarity=0.855  Sum_probs=124.8

Q ss_pred             ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      |++.+++|||||++++.    ..+.||++.+...+++.++.+++|||||++.+..++..+++.++++++|+|++++.++.
T Consensus         4 lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   83 (158)
T cd04151           4 ILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLG   83 (158)
T ss_pred             EECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHH
Confidence            57899999999999872    24568888888788888999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ....++..+++.....+.|+++++||+|+.+.....++...++.......+++++++||++|.|++++|+++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151          84 TAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             HHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            77777776665444457999999999999765555666666654444445678999999999999999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.98  E-value=1.1e-32  Score=189.76  Aligned_cols=152  Identities=14%  Similarity=0.124  Sum_probs=117.6

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EE--EECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KV--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++..|+|||||+++|     .+.+.||++..+. .+  +...+.+++|||+|+++|..+++.++++++++++|||+++
T Consensus         9 vvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~   88 (182)
T cd04172           9 VVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR   88 (182)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCC
Confidence            36789999999999976     5778899986553 23  3356889999999999999999999999999999999999


Q ss_pred             hhhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCCCCCcee-EEEEeeeccCCC
Q 030931           73 RERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVCEGLGLFDLKNRKW-HIQGTCALKGDG  141 (169)
Q Consensus        73 ~~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g  141 (169)
                      +.+|+.+ ..|+..+.+..  ++.|+++||||+|+.+...         ...+....+...++..++ +|+||||++|+|
T Consensus        89 ~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n  166 (182)
T cd04172          89 PETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN  166 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCC
Confidence            9999997 78988886543  5799999999999864210         001111111112234453 799999999998


Q ss_pred             -HHHHHHHHHHHHH
Q 030931          142 -LYEGLDWLASTLK  154 (169)
Q Consensus       142 -i~~~~~~l~~~~~  154 (169)
                       |.++|..++..+.
T Consensus       167 ~v~~~F~~~~~~~~  180 (182)
T cd04172         167 SVRDIFHVATLACV  180 (182)
T ss_pred             CHHHHHHHHHHHHh
Confidence             9999999998643

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=2.8e-31  Score=168.74  Aligned_cols=152  Identities=50%  Similarity=0.872  Sum_probs=142.5

Q ss_pred             cccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHH
Q 030931            3 RVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK   78 (169)
Q Consensus         3 ~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~   78 (169)
                      ++=+++||||++.++    +....||+|+++.++.++.+++++||++|+++.+..|.+||.+..++|||+|..++++++.
T Consensus        23 lGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~ee  102 (180)
T KOG0071|consen   23 LGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEE  102 (180)
T ss_pred             EecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHH
Confidence            446899999999987    5677899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931           79 AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK  154 (169)
Q Consensus        79 ~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  154 (169)
                      .+..+..++.++.+.+.|+++.+||.|++++..++|+.+.+.+..+..+.|...++||.+|.|+.+.|.|+...+.
T Consensus       103 Ar~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  103 ARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             HHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhcc
Confidence            9999999999888899999999999999999999999999999888888889999999999999999999987654

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.2e-32  Score=174.25  Aligned_cols=161  Identities=20%  Similarity=0.202  Sum_probs=128.7

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++..|+|||+|+++|     .++...|+|+.+..  ++.  +.++++||||+||++|++....|+++|.+.++|||+++
T Consensus        14 ~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Ts   93 (214)
T KOG0086|consen   14 VIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS   93 (214)
T ss_pred             EeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccc
Confidence            5678999999999976     67778899987744  344  67999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      +++|+.+..|+.+..- ...+++-++++|||.|+.++...   .-.......+.....+.|+||++|+|+++.|-...+.
T Consensus        94 rdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~R~V---tflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~t  169 (214)
T KOG0086|consen   94 RDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPEREV---TFLEASRFAQENELMFLETSALTGENVEEAFLKCART  169 (214)
T ss_pred             hhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChhhhh---hHHHHHhhhcccceeeeeecccccccHHHHHHHHHHH
Confidence            9999999999999843 34468999999999999765332   1111112224445568999999999999999999998


Q ss_pred             HHhhhccccccccc
Q 030931          153 LKEMRAAGYSSVGT  166 (169)
Q Consensus       153 ~~~~~~~~~~~~~~  166 (169)
                      +..+...+...+.+
T Consensus       170 Il~kIE~GElDPer  183 (214)
T KOG0086|consen  170 ILNKIESGELDPER  183 (214)
T ss_pred             HHHHHhhcCCCHHH
Confidence            88876555444333

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.97  E-value=3.4e-31  Score=185.40  Aligned_cols=153  Identities=16%  Similarity=0.182  Sum_probs=121.8

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE---CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   70 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~   70 (169)
                      ++++.+|+|||||+++|     .+.+.||++.++.  .+..   ..+.+++|||+|++++..++..++++++++|+|||+
T Consensus         4 vivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~   83 (201)
T cd04107           4 LVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDV   83 (201)
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEEC
Confidence            36789999999999986     4567899986543  3443   468899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCCCCCce-eEEEEeeeccCCCHHH
Q 030931           71 LDRERIGKAKQEFQAIIKDP---FMLNSVILVFANKQDMKG--AMTPMEVCEGLGLFDLKNRK-WHIQGTCALKGDGLYE  144 (169)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  144 (169)
                      +++++|+.+..|+..+....   ...++|+++|+||+|+.+  ....+++....     ...+ .+|+++||++|.|+++
T Consensus        84 t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sak~~~~v~e  158 (201)
T cd04107          84 TRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFC-----KENGFIGWFETSAKEGINIEE  158 (201)
T ss_pred             CCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCceEEEEeCCCCCCHHH
Confidence            99999999999988775421   235789999999999963  33344433322     1222 4699999999999999


Q ss_pred             HHHHHHHHHHhhhc
Q 030931          145 GLDWLASTLKEMRA  158 (169)
Q Consensus       145 ~~~~l~~~~~~~~~  158 (169)
                      +|+++++.+.+...
T Consensus       159 ~f~~l~~~l~~~~~  172 (201)
T cd04107         159 AMRFLVKNILANDK  172 (201)
T ss_pred             HHHHHHHHHHHhch
Confidence            99999998887643

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=99.97  E-value=6.8e-32  Score=190.50  Aligned_cols=155  Identities=15%  Similarity=0.148  Sum_probs=121.2

Q ss_pred             CccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931            1 MLRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI   76 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~   76 (169)
                      ++++.+++|||||+++|.    ..+.||++..+.....+.+.+.+|||+|++++..++..++++++++|+|||++++++|
T Consensus         4 vivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf   83 (220)
T cd04126           4 VLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSL   83 (220)
T ss_pred             EEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHH
Confidence            367899999999999872    3467888877776677889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC---------------------CCHhHH---HhhhCC------CCCCC
Q 030931           77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA---------------------MTPMEV---CEGLGL------FDLKN  126 (169)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~---------------------~~~~~~---~~~~~~------~~~~~  126 (169)
                      +.+..|+..+.+. ...+.|+++|+||+|+.+.                     +..++.   .+..+.      .....
T Consensus        84 ~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~  162 (220)
T cd04126          84 EELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPA  162 (220)
T ss_pred             HHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccccccccc
Confidence            9999988887653 2357999999999998641                     111211   111110      00011


Q ss_pred             ceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          127 RKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       127 ~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      ..++|+||||++|.||.++|..++..+.+.
T Consensus       163 ~~~~~~E~SA~tg~~V~elf~~i~~~~~~~  192 (220)
T cd04126         163 AEKMCFETSAKTGYNVDELFEYLFNLVLPL  192 (220)
T ss_pred             ccceEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            226799999999999999999999877764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.5e-32  Score=184.09  Aligned_cols=153  Identities=20%  Similarity=0.244  Sum_probs=127.7

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE----EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +|++..|.|||-|+-||     ..+..+|+|+.+.+    ++.+.++.+||||+||++|+.....|+++|.++++|||++
T Consensus        18 VliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDIT   97 (222)
T KOG0087|consen   18 VLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT   97 (222)
T ss_pred             EEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEech
Confidence            47889999999999987     56778999987765    3447899999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      .+.+|+.+..|+.++..+.. +++++++||||+||...   +.+...-+...++..+..++++||.+..|+++.|..++.
T Consensus        98 r~~Tfenv~rWL~ELRdhad-~nivimLvGNK~DL~~l---raV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~  173 (222)
T KOG0087|consen   98 RRQTFENVERWLKELRDHAD-SNIVIMLVGNKSDLNHL---RAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLT  173 (222)
T ss_pred             hHHHHHHHHHHHHHHHhcCC-CCeEEEEeecchhhhhc---cccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHH
Confidence            99999999999999976543 58999999999999652   222222222333455667999999999999999999998


Q ss_pred             HHHhhh
Q 030931          152 TLKEMR  157 (169)
Q Consensus       152 ~~~~~~  157 (169)
                      .+....
T Consensus       174 ~I~~~v  179 (222)
T KOG0087|consen  174 EIYKIV  179 (222)
T ss_pred             HHHHHH
Confidence            887753

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=2.1e-31  Score=188.61  Aligned_cols=148  Identities=16%  Similarity=0.189  Sum_probs=122.2

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+|+|||||+++|     ...+.||++.++....+    +.+++++|||+|++++..++..++++++++|+|||++
T Consensus        17 ~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~   96 (219)
T PLN03071         17 VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT   96 (219)
T ss_pred             EEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCC
Confidence            46789999999999976     56788999877655433    4689999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      ++.+|..+..|+..+.+..  ++.|+++||||+|+.+.. ..+++  .+    ....+++|++|||++|.|++++|.+++
T Consensus        97 ~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~--~~----~~~~~~~~~e~SAk~~~~i~~~f~~l~  168 (219)
T PLN03071         97 ARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV--TF----HRKKNLQYYEISAKSNYNFEKPFLYLA  168 (219)
T ss_pred             CHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH--HH----HHhcCCEEEEcCCCCCCCHHHHHHHHH
Confidence            9999999999999886543  579999999999986432 22222  11    123456799999999999999999999


Q ss_pred             HHHHhh
Q 030931          151 STLKEM  156 (169)
Q Consensus       151 ~~~~~~  156 (169)
                      +.+.+.
T Consensus       169 ~~~~~~  174 (219)
T PLN03071        169 RKLAGD  174 (219)
T ss_pred             HHHHcC
Confidence            988764

>cd04128 Spg1 Spg1p

Probab=99.97  E-value=1.9e-31  Score=183.89  Aligned_cols=154  Identities=12%  Similarity=0.173  Sum_probs=119.6

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++..|+|||||++||     .+.+.||++.++.  .+..+  .+.+++|||+|++++..++..++++++++++|||++
T Consensus         4 ~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t   83 (182)
T cd04128           4 GLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLT   83 (182)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECc
Confidence            46789999999999976     5678899997663  44443  588999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  148 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  148 (169)
                      ++++|+.+..|+..+.+... ...| ++||||+|+......   +.+.+ ......+..++++++|||++|.|++++|++
T Consensus        84 ~~~s~~~i~~~~~~~~~~~~-~~~p-ilVgnK~Dl~~~~~~~~~~~~~~-~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~  160 (182)
T cd04128          84 RKSTLNSIKEWYRQARGFNK-TAIP-ILVGTKYDLFADLPPEEQEEITK-QARKYAKAMKAPLIFCSTSHSINVQKIFKI  160 (182)
T ss_pred             CHHHHHHHHHHHHHHHHhCC-CCCE-EEEEEchhccccccchhhhhhHH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999998866432 3566 678999999532111   11111 111112334467999999999999999999


Q ss_pred             HHHHHHhhh
Q 030931          149 LASTLKEMR  157 (169)
Q Consensus       149 l~~~~~~~~  157 (169)
                      +.+.+.+.+
T Consensus       161 l~~~l~~~~  169 (182)
T cd04128         161 VLAKAFDLP  169 (182)
T ss_pred             HHHHHHhcC
Confidence            999887644

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.97  E-value=4.8e-31  Score=179.46  Aligned_cols=148  Identities=18%  Similarity=0.228  Sum_probs=121.1

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||++++     ...+.||++..+.....    +.+.+++|||+|++.+..++..+++.+|++|+|||+++
T Consensus         5 vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   84 (166)
T cd00877           5 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTS   84 (166)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCC
Confidence            6789999999999986     45678898877655433    56899999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      ++++..+..|+..+.+..  .+.|+++|+||+|+.+.....+... +    .+...++++++||++|+|++++|+++++.
T Consensus        85 ~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~-~----~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          85 RVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQIT-F----HRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             HHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHH-H----HHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            999999999999986644  3899999999999964332222111 1    12345679999999999999999999998


Q ss_pred             HHhh
Q 030931          153 LKEM  156 (169)
Q Consensus       153 ~~~~  156 (169)
                      +.+.
T Consensus       158 ~~~~  161 (166)
T cd00877         158 LLGN  161 (166)
T ss_pred             HHhc
Confidence            8753

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=1.7e-32  Score=173.14  Aligned_cols=148  Identities=20%  Similarity=0.324  Sum_probs=126.1

Q ss_pred             CccccCCCCCceeeeec------eeeeeeeeeEEEEE----EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931            1 MLRVKQPYCTSCTLVKF------YLLFLLLVRFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   70 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f------~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~   70 (169)
                      ||++..+.|||+|+-||      .....+|+|++++.    ++..++++++|||+||++|++....|++.||+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            89999999999999998      56788999988765    344789999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931           71 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-----MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      .+..+|++.+.|+.++.+.. ...+.+.++|||+|+..+     .+.+.+.+.+        ++|++++||++|.|++-.
T Consensus        81 ankasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y--------~ipfmetsaktg~nvd~a  151 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHERAVKRDDGEKLAEAY--------GIPFMETSAKTGFNVDLA  151 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchhhccccchHHHHHHHH--------CCCceeccccccccHhHH
Confidence            99999999999999986533 357889999999998542     1234444444        456999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030931          146 LDWLASTLKEMR  157 (169)
Q Consensus       146 ~~~l~~~~~~~~  157 (169)
                      |-.+.+.+.+.+
T Consensus       152 f~~ia~~l~k~~  163 (192)
T KOG0083|consen  152 FLAIAEELKKLK  163 (192)
T ss_pred             HHHHHHHHHHhc
Confidence            999999888764

>cd04131 Rnd Rnd subfamily

Probab=99.97  E-value=5.3e-32  Score=185.98  Aligned_cols=152  Identities=13%  Similarity=0.110  Sum_probs=116.2

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EE--EECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KV--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++..|+|||||+++|     .+.+.||++..+. .+  +...+++++|||+|++++..+++.++++++++|+|||+++
T Consensus         5 v~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~   84 (178)
T cd04131           5 VVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISR   84 (178)
T ss_pred             EEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCC
Confidence            46789999999999976     5677889886553 23  3356889999999999999999999999999999999999


Q ss_pred             hhhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCCCCCcee-EEEEeeeccCCC
Q 030931           73 RERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVCEGLGLFDLKNRKW-HIQGTCALKGDG  141 (169)
Q Consensus        73 ~~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~g  141 (169)
                      +++|+.+ ..|+..+.+..  ++.|+++||||+|+.+...         ...+....+....+..++ +|+||||++|+|
T Consensus        85 ~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~  162 (178)
T cd04131          85 PETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEK  162 (178)
T ss_pred             hhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCc
Confidence            9999996 78988886543  5799999999999854200         000111111111233444 799999999995


Q ss_pred             -HHHHHHHHHHHHH
Q 030931          142 -LYEGLDWLASTLK  154 (169)
Q Consensus       142 -i~~~~~~l~~~~~  154 (169)
                       |+++|..+++...
T Consensus       163 ~v~~~F~~~~~~~~  176 (178)
T cd04131         163 SVRDIFHVATMACL  176 (178)
T ss_pred             CHHHHHHHHHHHHh
Confidence             9999999998543

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04122 Rab14 Rab14 subfamily

Probab=99.97  E-value=1.8e-31  Score=181.42  Aligned_cols=148  Identities=18%  Similarity=0.251  Sum_probs=118.6

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||+++|     .+.+.||++.++..  +..  ..+++++|||||++++...+..++++++++|+|||+++
T Consensus         7 iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~   86 (166)
T cd04122           7 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR   86 (166)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC
Confidence            5679999999999976     45667787765532  333  46789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +++|+.+..|+..+.... .++.|+++|+||+|+.+..  +.++....     .+..+++++++||++|.|+.++|.+++
T Consensus        87 ~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~e~f~~l~  160 (166)
T cd04122          87 RSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQF-----ADENGLLFLECSAKTGENVEDAFLETA  160 (166)
T ss_pred             HHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            999999999998875532 3578999999999996543  22332221     123456899999999999999999999


Q ss_pred             HHHHh
Q 030931          151 STLKE  155 (169)
Q Consensus       151 ~~~~~  155 (169)
                      ..+.+
T Consensus       161 ~~~~~  165 (166)
T cd04122         161 KKIYQ  165 (166)
T ss_pred             HHHhh
Confidence            87754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.97  E-value=1.1e-30  Score=177.51  Aligned_cols=150  Identities=29%  Similarity=0.521  Sum_probs=125.9

Q ss_pred             ccccCCCCCceeeeece-----------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931            2 LRVKQPYCTSCTLVKFY-----------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   70 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-----------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~   70 (169)
                      +++.+|+|||||++++.           ..+.||++.++..+.+++..+.+|||||++.+..++..+++.++++++|+|+
T Consensus         4 ~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~   83 (167)
T cd04160           4 ILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDS   83 (167)
T ss_pred             EEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence            57899999999999862           3457788888888888999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCC--CCCceeEEEEeeeccCCCHHHHHHH
Q 030931           71 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD--LKNRKWHIQGTCALKGDGLYEGLDW  148 (169)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~gi~~~~~~  148 (169)
                      ++.+++.....|+..+++.....+.|+++++||+|+.+.....++...+....  .....++++++||++|+|++++++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~  163 (167)
T cd04160          84 TDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEW  163 (167)
T ss_pred             chHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHH
Confidence            99989999988998887755556899999999999977665555555444221  2335678999999999999999999


Q ss_pred             HHH
Q 030931          149 LAS  151 (169)
Q Consensus       149 l~~  151 (169)
                      +.+
T Consensus       164 l~~  166 (167)
T cd04160         164 LVE  166 (167)
T ss_pred             Hhc
Confidence            975

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04127 Rab27A Rab27a subfamily

Probab=99.97  E-value=1.6e-31  Score=183.85  Aligned_cols=151  Identities=17%  Similarity=0.307  Sum_probs=120.5

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE------------CCEEEEEEEcCCCCCchhhHHhhccCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY------------KNVIFTVWDVGGQEKLRPLWRHYFNNT   61 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~------------~~~~~~i~D~~G~~~~~~~~~~~~~~~   61 (169)
                      ++++.+|+|||||+++|     .+.+.||++.++..  +.+            ..+.+++|||||++++..++..+++++
T Consensus         8 ~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   87 (180)
T cd04127           8 LALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDA   87 (180)
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCC
Confidence            46789999999999975     56778888865533  332            248899999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccC
Q 030931           62 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKG  139 (169)
Q Consensus        62 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  139 (169)
                      +++++|||++++++|..+..|+..+......++.|+++|+||+|+.+..  ..++. ..+.    +..+++++++||++|
T Consensus        88 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~e~Sak~~  162 (180)
T cd04127          88 MGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQA-KALA----DKYGIPYFETSAATG  162 (180)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHH-HHHH----HHcCCeEEEEeCCCC
Confidence            9999999999999999999999988664444578999999999996532  22222 1121    223457999999999


Q ss_pred             CCHHHHHHHHHHHHHhh
Q 030931          140 DGLYEGLDWLASTLKEM  156 (169)
Q Consensus       140 ~gi~~~~~~l~~~~~~~  156 (169)
                      .|++++|+++++.+.++
T Consensus       163 ~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         163 TNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999877643

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04144 Ras2 Ras2 subfamily

Probab=99.97  E-value=1.3e-31  Score=186.01  Aligned_cols=158  Identities=15%  Similarity=0.154  Sum_probs=122.2

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+|+|||||+++|     .+.+.||++..+. .+..  ..+.+++|||+|++++..++..+++++|++|+|||+++
T Consensus         3 ~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~   82 (190)
T cd04144           3 VVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITS   82 (190)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCC
Confidence            36789999999999875     4567788874432 2333  45679999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  148 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  148 (169)
                      .++|+.+..|+..+.....  ..+.|+++|+||+|+....  ...+.. .+    ....+++++++||++|.|++++|++
T Consensus        83 ~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~SAk~~~~v~~l~~~  157 (190)
T cd04144          83 RSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGA-AL----ARRLGCEFIEASAKTNVNVERAFYT  157 (190)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHH-HH----HHHhCCEEEEecCCCCCCHHHHHHH
Confidence            9999999999888765322  2578999999999986422  222211 11    1223457999999999999999999


Q ss_pred             HHHHHHhhhcccccc
Q 030931          149 LASTLKEMRAAGYSS  163 (169)
Q Consensus       149 l~~~~~~~~~~~~~~  163 (169)
                      +++.+.++...+..+
T Consensus       158 l~~~l~~~~~~~~~~  172 (190)
T cd04144         158 LVRALRQQRQGGQGP  172 (190)
T ss_pred             HHHHHHHhhcccCCC
Confidence            999888776655444

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.97  E-value=1.2e-30  Score=176.23  Aligned_cols=151  Identities=40%  Similarity=0.660  Sum_probs=124.3

Q ss_pred             CccccCCCCCceeeeece----eeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhh
Q 030931            1 MLRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER   75 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~   75 (169)
                      ++++.+|+|||||+++|.    ..+.||.++++..+.. +.+.+.+||+||++.+...+..+++.++++++|+|+++..+
T Consensus         3 ~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~   82 (160)
T cd04156           3 LLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEAR   82 (160)
T ss_pred             EEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHH
Confidence            367899999999999873    2346888877766665 46899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC-CCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           76 IGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      +.....|+..+++.....+.|+++|+||+|+.+....+++...+..... ...++++++|||++|+|++++|+++..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156          83 LDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             HHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            9999999988877554468999999999999765566667665543222 335678999999999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.97  E-value=2.6e-31  Score=181.44  Aligned_cols=154  Identities=16%  Similarity=0.242  Sum_probs=119.3

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+|+|||||+++|     .+.+.||++..+.  .+..  ..+++++|||||++++..++..+++++|++++|||++
T Consensus         4 ~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~   83 (170)
T cd04108           4 IVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLT   83 (170)
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECc
Confidence            36789999999999976     5677899986654  3333  3578999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      +++++..+..|+.++++.....+.|+++|+||+|+.+..... .............+.+++++||++|.|++++|+.+..
T Consensus        84 ~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~  162 (170)
T cd04108          84 DVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYA-LMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAA  162 (170)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccccc-ccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999998764433468899999999985432211 0000000011223457999999999999999999998


Q ss_pred             HHHh
Q 030931          152 TLKE  155 (169)
Q Consensus       152 ~~~~  155 (169)
                      .+.+
T Consensus       163 ~~~~  166 (170)
T cd04108         163 LTFE  166 (170)
T ss_pred             HHHH
Confidence            8754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.3e-32  Score=173.33  Aligned_cols=152  Identities=18%  Similarity=0.202  Sum_probs=123.1

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEE--ECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQ--YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +|.++.|.|||+|++||     ++....|+|+.+  .+++  .++++++||||+||++|++....|++.|+++|+|||++
T Consensus        11 vlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydis   90 (213)
T KOG0095|consen   11 VLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDIS   90 (213)
T ss_pred             EEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecc
Confidence            35679999999999997     567778888654  4444  47899999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ..++|+-+.+|+.++-... ...+..++||||.|+.+.   +++....+....+.....|+++||+.-.|++.+|..+..
T Consensus        91 cqpsfdclpewlreie~ya-n~kvlkilvgnk~d~~dr---revp~qigeefs~~qdmyfletsakea~nve~lf~~~a~  166 (213)
T KOG0095|consen   91 CQPSFDCLPEWLREIEQYA-NNKVLKILVGNKIDLADR---REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLAC  166 (213)
T ss_pred             cCcchhhhHHHHHHHHHHh-hcceEEEeeccccchhhh---hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHH
Confidence            9999999999999985533 346888999999999765   334443333333344456899999999999999999887


Q ss_pred             HHHhh
Q 030931          152 TLKEM  156 (169)
Q Consensus       152 ~~~~~  156 (169)
                      .+...
T Consensus       167 rli~~  171 (213)
T KOG0095|consen  167 RLISE  171 (213)
T ss_pred             HHHHH
Confidence            66553

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.97  E-value=2.3e-31  Score=182.47  Aligned_cols=148  Identities=16%  Similarity=0.157  Sum_probs=114.7

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+|+|||||+++|     .+.+.||++..+. .+..+  .+++++|||+|++++..++..++++++++|+|||+++
T Consensus         5 ~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~   84 (175)
T cd01874           5 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS   84 (175)
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCC
Confidence            36789999999999976     4677899986654 34444  4889999999999999999999999999999999999


Q ss_pred             hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC------------CCCCCce-eEEEEeeecc
Q 030931           73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL------------FDLKNRK-WHIQGTCALK  138 (169)
Q Consensus        73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~-~~~~~~Sa~~  138 (169)
                      +++|+.+. .|+..+....  ++.|+++|+||+|+.+...   ..+.+..            ......+ +.|++|||++
T Consensus        85 ~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~---~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          85 PSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPS---TIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             HHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChh---hHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            99999997 5877775432  5799999999999854311   1111110            0111222 5799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 030931          139 GDGLYEGLDWLASTL  153 (169)
Q Consensus       139 ~~gi~~~~~~l~~~~  153 (169)
                      |.|++++|+.++.++
T Consensus       160 g~~v~~~f~~~~~~~  174 (175)
T cd01874         160 QKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998753

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PTZ00369 Ras-like protein; Provisional

Probab=99.97  E-value=1.8e-31  Score=185.13  Aligned_cols=152  Identities=14%  Similarity=0.135  Sum_probs=120.9

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE---EEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+|+|||||+++|     ...+.||.+..+.   .++.+.+.+++|||||++++..++..+++.++++++|||+++
T Consensus         9 ~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~   88 (189)
T PTZ00369          9 VVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITS   88 (189)
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCC
Confidence            36789999999999976     3466688775543   234456789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +++|+.+..|+..+.+.....+.|+++|+||+|+.+..  +..+... +    ....+++++++||++|.|++++|.+++
T Consensus        89 ~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~-~----~~~~~~~~~e~Sak~~~gi~~~~~~l~  163 (189)
T PTZ00369         89 RSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQE-L----AKSFGIPFLETSAKQRVNVDEAFYELV  163 (189)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-H----HHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999988765444589999999999986432  2222111 1    122345799999999999999999999


Q ss_pred             HHHHhhh
Q 030931          151 STLKEMR  157 (169)
Q Consensus       151 ~~~~~~~  157 (169)
                      +.+.+..
T Consensus       164 ~~l~~~~  170 (189)
T PTZ00369        164 REIRKYL  170 (189)
T ss_pred             HHHHHHh
Confidence            8887653

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.97  E-value=1.8e-30  Score=179.42  Aligned_cols=151  Identities=26%  Similarity=0.428  Sum_probs=129.7

Q ss_pred             ccccCCCCCceeeeecee----eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFYL----LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~----~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+|+|||||++++..    .+.||.+.....+..+++++.+||+||+++++.+|..++++++++++|+|+++++++.
T Consensus        22 ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~  101 (184)
T smart00178       22 FLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFA  101 (184)
T ss_pred             EECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHH
Confidence            567999999999998843    3467888777778888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCC-------CceeEEEEeeeccCCCHHHHHHHHH
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLK-------NRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      ....++..+++.....+.|+++++||+|+....+.+++.+.+++....       .+.+.+++|||++|.|++++++|+.
T Consensus       102 ~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~  181 (184)
T smart00178      102 ESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLS  181 (184)
T ss_pred             HHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHH
Confidence            998888888765445689999999999998777888888888754321       2567799999999999999999998


Q ss_pred             HH
Q 030931          151 ST  152 (169)
Q Consensus       151 ~~  152 (169)
                      ..
T Consensus       182 ~~  183 (184)
T smart00178      182 QY  183 (184)
T ss_pred             hh
Confidence            64

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=3.1e-30  Score=178.09  Aligned_cols=156  Identities=39%  Similarity=0.637  Sum_probs=124.0

Q ss_pred             ccccCCCCCceeeeecee----eeeeeeeEEEEEEEE-----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKFYL----LFLLLVRFNVEKVQY-----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~----~~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||++++..    .+.||.+++......     ..+.+++|||||++++..+|..+++.++++++|+|+++
T Consensus         8 ~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~   87 (183)
T cd04152           8 MLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVD   87 (183)
T ss_pred             EECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCC
Confidence            568999999999998722    235777765544333     56899999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC-CCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ..++..+..|+..+.+.....+.|+++|+||+|+.+....+++...+..... ....++++++||++|+|++++|+++.+
T Consensus        88 ~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~  167 (183)
T cd04152          88 VERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYE  167 (183)
T ss_pred             HHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHH
Confidence            9999998888888776444457999999999999765555555544443222 223467899999999999999999999


Q ss_pred             HHHhhh
Q 030931          152 TLKEMR  157 (169)
Q Consensus       152 ~~~~~~  157 (169)
                      .+.+..
T Consensus       168 ~l~~~~  173 (183)
T cd04152         168 MILKRR  173 (183)
T ss_pred             HHHHHH
Confidence            887654

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.97  E-value=3e-30  Score=174.00  Aligned_cols=150  Identities=49%  Similarity=0.853  Sum_probs=130.1

Q ss_pred             ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+|+|||||++++    ...+.+|.+.+...+.+..+.+.+||+||++.+...+..+++.++++++|||+++++++.
T Consensus         4 iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~   83 (158)
T cd00878           4 ILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIE   83 (158)
T ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHH
Confidence            5778999999999987    346778888888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ....|+..+.......+.|+++++||+|+......+++...++........++++++||++|.|++++|++|..
T Consensus        84 ~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878          84 EAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             HHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            99999888877554568999999999999876666777776665433455678999999999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04136 Rap_like Rap-like subfamily

Probab=99.97  E-value=3.2e-31  Score=179.43  Aligned_cols=148  Identities=14%  Similarity=0.170  Sum_probs=115.6

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+|+|||||+++|     .+.+.||.+..+ ..+..  ..+.+++|||||++++..++..++++++++++|||+++
T Consensus         5 ~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~   84 (163)
T cd04136           5 VVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITS   84 (163)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCC
Confidence            36789999999999976     355667776322 23433  45778999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+|+.+..|+..+.+.....+.|+++|+||+|+.+..  ..++. ..+.    ...+.+++++||++|.|+.++|++++
T Consensus        85 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          85 QSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEG-QALA----RQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHH-HHHH----HHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999888765444689999999999986432  22111 1111    12236799999999999999999998


Q ss_pred             HHH
Q 030931          151 STL  153 (169)
Q Consensus       151 ~~~  153 (169)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04134 Rho3 Rho3 subfamily

Probab=99.97  E-value=2.4e-31  Score=184.48  Aligned_cols=155  Identities=16%  Similarity=0.159  Sum_probs=118.3

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE-E--EECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-V--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+|+|||||+++|     .+.+.||++..+.. +  +...+.+++|||+|++.+..++..++++++++|+|||+++
T Consensus         4 vivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~   83 (189)
T cd04134           4 VVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDS   83 (189)
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCC
Confidence            36789999999999986     45567888765532 2  2245889999999999999999999999999999999999


Q ss_pred             hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHh---------hhCCCCCCC-ceeEEEEeeeccCCC
Q 030931           73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCE---------GLGLFDLKN-RKWHIQGTCALKGDG  141 (169)
Q Consensus        73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~Sa~~~~g  141 (169)
                      +++|+.+. .|+..+....  ++.|+++|+||+|+.+.....+...         ..+...... ..++|++|||++|.|
T Consensus        84 ~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~  161 (189)
T cd04134          84 PDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRG  161 (189)
T ss_pred             HHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCC
Confidence            99999886 5888876532  5799999999999975432221110         001111112 226799999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 030931          142 LYEGLDWLASTLKEMR  157 (169)
Q Consensus       142 i~~~~~~l~~~~~~~~  157 (169)
                      ++++|+++.+.+....
T Consensus       162 v~e~f~~l~~~~~~~~  177 (189)
T cd04134         162 VNEAFTEAARVALNVR  177 (189)
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999999887654

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04175 Rap1 Rap1 subgroup

Probab=99.97  E-value=4.3e-31  Score=179.19  Aligned_cols=148  Identities=14%  Similarity=0.150  Sum_probs=117.6

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||++++     .+.+.||++..+. .+..  ..+.+++|||||++++..++..+++++|++++|||+++.
T Consensus         6 ~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~   85 (164)
T cd04175           6 VLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQ   85 (164)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCH
Confidence            5789999999999986     4556678774432 3444  367788999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      .+|+.+.+|+..+.+.....+.|+++++||+|+.+..  +..+. ..+.    +..+++++++||++|.|++++|.++++
T Consensus        86 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175          86 STFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNLA----RQWGCAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHHH----HHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999998765555689999999999996532  22221 1111    223457999999999999999999987


Q ss_pred             HHH
Q 030931          152 TLK  154 (169)
Q Consensus       152 ~~~  154 (169)
                      .+.
T Consensus       161 ~l~  163 (164)
T cd04175         161 QIN  163 (164)
T ss_pred             Hhh
Confidence            653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd00879 Sar1 Sar1 subfamily

Probab=99.97  E-value=4.2e-30  Score=178.32  Aligned_cols=151  Identities=26%  Similarity=0.484  Sum_probs=127.8

Q ss_pred             ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+|+|||||++++.    ..+.||.+.....+..+++.+.+||+||++.+...|..++++++++++|+|+++.+++.
T Consensus        24 ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~  103 (190)
T cd00879          24 FLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQ  103 (190)
T ss_pred             EECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHH
Confidence            57789999999999873    35677888777788888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC-----------CCceeEEEEeeeccCCCHHHHH
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-----------KNRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      ....|+..+++.....+.|+++++||+|+......+++.+.++....           ..+.+++++|||++|+|++++|
T Consensus       104 ~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~  183 (190)
T cd00879         104 ESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAF  183 (190)
T ss_pred             HHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHH
Confidence            88889988877555567999999999999776677777776654221           1245679999999999999999


Q ss_pred             HHHHHH
Q 030931          147 DWLAST  152 (169)
Q Consensus       147 ~~l~~~  152 (169)
                      +|+...
T Consensus       184 ~~l~~~  189 (190)
T cd00879         184 RWLSQY  189 (190)
T ss_pred             HHHHhh
Confidence            999865

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04117 Rab15 Rab15 subfamily

Probab=99.97  E-value=6.3e-31  Score=178.04  Aligned_cols=147  Identities=16%  Similarity=0.247  Sum_probs=116.8

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+|+|||||+++|     .+.+.||++.++.  .+..+  .+.+++||++|++++..++..+++.+|++++|||++
T Consensus         4 ~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   83 (161)
T cd04117           4 LLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDIS   83 (161)
T ss_pred             EEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECC
Confidence            36789999999999875     5667889886653  44444  478899999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      ++++|+.+..|+..+.... ..+.|+++|+||+|+.+.... .+....+.    +..+.+|++|||++|.|++++|.+++
T Consensus        84 ~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~f~~l~  158 (161)
T cd04117          84 SERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLA----KEYGMDFFETSACTNSNIKESFTRLT  158 (161)
T ss_pred             CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999886542 247999999999999654321 11222221    22336799999999999999999998


Q ss_pred             HH
Q 030931          151 ST  152 (169)
Q Consensus       151 ~~  152 (169)
                      +.
T Consensus       159 ~~  160 (161)
T cd04117         159 EL  160 (161)
T ss_pred             hh
Confidence            64

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01865 Rab3 Rab3 subfamily

Probab=99.97  E-value=1.2e-30  Score=177.30  Aligned_cols=149  Identities=17%  Similarity=0.245  Sum_probs=118.1

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+++|||||++++     .+.+.||.+.++.  .+..  ..+.+++|||+|++++..++..++++++++++|||++
T Consensus         5 ~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~   84 (165)
T cd01865           5 LIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT   84 (165)
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECC
Confidence            36789999999999976     4567788886543  3333  4588999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++++|+.+..|+..+.... ..+.|+++|+||+|+.+..  ..++..+..     +..+++++++||++|.|+.++|+++
T Consensus        85 ~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~~l  158 (165)
T cd01865          85 NEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLA-----DQLGFEFFEASAKENINVKQVFERL  158 (165)
T ss_pred             CHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHHHHH
Confidence            9999999999999875432 3478999999999996532  222221111     1234579999999999999999999


Q ss_pred             HHHHHh
Q 030931          150 ASTLKE  155 (169)
Q Consensus       150 ~~~~~~  155 (169)
                      +..+.+
T Consensus       159 ~~~~~~  164 (165)
T cd01865         159 VDIICD  164 (165)
T ss_pred             HHHHHh
Confidence            987754

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.97  E-value=8.8e-31  Score=184.96  Aligned_cols=156  Identities=12%  Similarity=0.091  Sum_probs=117.6

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+|+|||||+++|     .+.+.||++.++. .+..  ..+.+.+|||+|++.|..+++.+++++|++|+|||+++
T Consensus         5 vvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~   84 (222)
T cd04173           5 VVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISR   84 (222)
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCC
Confidence            46789999999999975     5678899986653 2333  56889999999999999999999999999999999999


Q ss_pred             hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hH--------HHhhhCCCCCCCce-eEEEEeeeccCCC
Q 030931           73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-ME--------VCEGLGLFDLKNRK-WHIQGTCALKGDG  141 (169)
Q Consensus        73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~--------~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  141 (169)
                      +++|+.+. .|...+...  .++.|+++||||+|+.+.... .+        +....+....+..+ .+|+||||+++.|
T Consensus        85 ~~Sf~~i~~~w~~~~~~~--~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~  162 (222)
T cd04173          85 PETLDSVLKKWQGETQEF--CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSER  162 (222)
T ss_pred             HHHHHHHHHHHHHHHHhh--CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCc
Confidence            99999995 566555332  368999999999999643110 00        11111111122334 3799999999985


Q ss_pred             -HHHHHHHHHHHHHhhhc
Q 030931          142 -LYEGLDWLASTLKEMRA  158 (169)
Q Consensus       142 -i~~~~~~l~~~~~~~~~  158 (169)
                       |.++|+.++.+...+..
T Consensus       163 ~V~~~F~~~~~~~~~~~~  180 (222)
T cd04173         163 SVRDVFHVATVASLGRGH  180 (222)
T ss_pred             CHHHHHHHHHHHHHhccC
Confidence             99999999997776543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04111 Rab39 Rab39 subfamily

Probab=99.97  E-value=2.5e-30  Score=182.12  Aligned_cols=155  Identities=22%  Similarity=0.308  Sum_probs=122.7

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE---CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   70 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~   70 (169)
                      ++++.+|+|||||+++|     ...+.||++.++..  +..   ..+.+++|||+|++++..++..++++++++++|||+
T Consensus         6 vvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~   85 (211)
T cd04111           6 IVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDI   85 (211)
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEEC
Confidence            36789999999999976     45567888765533  333   357899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931           71 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  148 (169)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  148 (169)
                      +++++|+.+..|+..+.+.......|+++++||+|+.+..  ..++. ..+.    +..+++++++||++|.|++++|++
T Consensus        86 ~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          86 TNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-EKLA----KDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-HHHH----HHhCCEEEEEeCCCCCCHHHHHHH
Confidence            9999999999999998765444568899999999986532  22222 1221    233467999999999999999999


Q ss_pred             HHHHHHhhhccc
Q 030931          149 LASTLKEMRAAG  160 (169)
Q Consensus       149 l~~~~~~~~~~~  160 (169)
                      +.+.+.+.....
T Consensus       161 l~~~~~~~~~~~  172 (211)
T cd04111         161 LTQEIYERIKRG  172 (211)
T ss_pred             HHHHHHHHhhcC
Confidence            999888764433

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.5e-30  Score=168.82  Aligned_cols=152  Identities=17%  Similarity=0.273  Sum_probs=124.3

Q ss_pred             cccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE-----------CCEEEEEEEcCCCCCchhhHHhhccCCCEE
Q 030931            3 RVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY-----------KNVIFTVWDVGGQEKLRPLWRHYFNNTDGL   64 (169)
Q Consensus         3 ~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~-----------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~i   64 (169)
                      ++..|+||||+++++     .++..+|+|+++..  +-+           ..+.+++|||+||++|+++.-.+++.|=++
T Consensus        15 LGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGF   94 (219)
T KOG0081|consen   15 LGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGF   94 (219)
T ss_pred             hccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccc
Confidence            568899999999975     77889999987754  222           248899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      +++||+++..+|.+++.|+.++.-+.-..++.++++|||+|+.+..   ++.+........++++||||+||-+|.|+++
T Consensus        95 lLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R---~Vs~~qa~~La~kyglPYfETSA~tg~Nv~k  171 (219)
T KOG0081|consen   95 LLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQR---VVSEDQAAALADKYGLPYFETSACTGTNVEK  171 (219)
T ss_pred             eEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhh---hhhHHHHHHHHHHhCCCeeeeccccCcCHHH
Confidence            9999999999999999999988665555678899999999997653   2222222222356677899999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030931          145 GLDWLASTLKEMR  157 (169)
Q Consensus       145 ~~~~l~~~~~~~~  157 (169)
                      ..+.+...+.++.
T Consensus       172 ave~LldlvM~Ri  184 (219)
T KOG0081|consen  172 AVELLLDLVMKRI  184 (219)
T ss_pred             HHHHHHHHHHHHH
Confidence            9888888777754

>cd04109 Rab28 Rab28 subfamily

Probab=99.97  E-value=2.6e-30  Score=182.68  Aligned_cols=152  Identities=15%  Similarity=0.186  Sum_probs=120.3

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE---CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   70 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~   70 (169)
                      ++++.+++|||||+++|     ...+.||++.++.  .+..   ..+.+++|||+|++.+..++..+++++|++|+|||+
T Consensus         4 ~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~   83 (215)
T cd04109           4 VVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDV   83 (215)
T ss_pred             EEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEEC
Confidence            36789999999999987     4677889986653  3443   358999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931           71 LDRERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      +++++|+.+..|+..+.+...  ..+.|+++|+||+|+.+..  ..++.. .+.    ...+++++++||++|+|++++|
T Consensus        84 t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~-~~~----~~~~~~~~~iSAktg~gv~~lf  158 (215)
T cd04109          84 TNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHA-RFA----QANGMESCLVSAKTGDRVNLLF  158 (215)
T ss_pred             CCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHH-HHH----HHcCCEEEEEECCCCCCHHHHH
Confidence            999999999999888866332  2457899999999996432  212111 111    2234579999999999999999


Q ss_pred             HHHHHHHHhhh
Q 030931          147 DWLASTLKEMR  157 (169)
Q Consensus       147 ~~l~~~~~~~~  157 (169)
                      ++++..+....
T Consensus       159 ~~l~~~l~~~~  169 (215)
T cd04109         159 QQLAAELLGVD  169 (215)
T ss_pred             HHHHHHHHhcc
Confidence            99999887653

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04110 Rab35 Rab35 subfamily

Probab=99.97  E-value=3e-30  Score=180.38  Aligned_cols=151  Identities=18%  Similarity=0.249  Sum_probs=120.9

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+|+|||||+++|     .+.+.||++..+  ..+...  .+.+.+||+||++.+..++..++++++++++|||++
T Consensus        10 vvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~   89 (199)
T cd04110          10 LIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVT   89 (199)
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECC
Confidence            46789999999999976     456788988654  344443  478999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++++|..+..|+..+....  ...|+++|+||+|+.+...  .++.....     ...+++++++||++|.||+++|+++
T Consensus        90 ~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~gi~~lf~~l  162 (199)
T cd04110          90 NGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFA-----GQMGISLFETSAKENINVEEMFNCI  162 (199)
T ss_pred             CHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEECCCCcCHHHHHHHH
Confidence            9999999999999875533  5789999999999965422  22222111     1234679999999999999999999


Q ss_pred             HHHHHhhhc
Q 030931          150 ASTLKEMRA  158 (169)
Q Consensus       150 ~~~~~~~~~  158 (169)
                      ...+...+.
T Consensus       163 ~~~~~~~~~  171 (199)
T cd04110         163 TELVLRAKK  171 (199)
T ss_pred             HHHHHHhhh
Confidence            998877543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.97  E-value=5.2e-30  Score=173.09  Aligned_cols=148  Identities=14%  Similarity=0.127  Sum_probs=116.1

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+|+|||||+++|     ...+.||.+..+. .+..  ..+.+++|||+|++++..++..+++.++++++|||+++
T Consensus         5 ~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~   84 (162)
T cd04138           5 VVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINS   84 (162)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCC
Confidence            46789999999999976     4556677774432 2333  34678899999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      +.+|..+..|+..+.+.....+.|+++|+||+|+.+.. ...+.....     +..+++++++||++|.|++++|+++++
T Consensus        85 ~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (162)
T cd04138          85 RKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLA-----KSYGIPYIETSAKTRQGVEEAFYTLVR  159 (162)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHH-----HHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999998888765445689999999999986532 222222111     223457999999999999999999987


Q ss_pred             HH
Q 030931          152 TL  153 (169)
Q Consensus       152 ~~  153 (169)
                      .+
T Consensus       160 ~~  161 (162)
T cd04138         160 EI  161 (162)
T ss_pred             Hh
Confidence            54

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.97  E-value=2.8e-30  Score=175.84  Aligned_cols=149  Identities=21%  Similarity=0.300  Sum_probs=119.5

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+++|||||+++|     .+.+.||.+..+  ..+..  ..+.+++||++|++++..++..+++++|++++|||++
T Consensus         7 ~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~   86 (167)
T cd01867           7 LLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDIT   86 (167)
T ss_pred             EEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECc
Confidence            46789999999999976     566788888654  33444  3578999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++++|..+.+|+..+.+.. ..+.|+++|+||+|+.+..  ..++.....     ...+++++++||++|.|++++|.++
T Consensus        87 ~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          87 DEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALA-----DEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             CHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999886532 3579999999999997532  222322211     2334579999999999999999999


Q ss_pred             HHHHHh
Q 030931          150 ASTLKE  155 (169)
Q Consensus       150 ~~~~~~  155 (169)
                      ++.+..
T Consensus       161 ~~~~~~  166 (167)
T cd01867         161 AKDIKK  166 (167)
T ss_pred             HHHHHh
Confidence            998754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04176 Rap2 Rap2 subgroup

Probab=99.97  E-value=1.3e-30  Score=176.58  Aligned_cols=148  Identities=16%  Similarity=0.195  Sum_probs=114.8

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeee-EEEEEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVR-FNVEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~-~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+|+|||||+++|     .+.+.||.+ .....+..  ..+.+++|||||++++..++..+++++|++++|||+++
T Consensus         5 ~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~   84 (163)
T cd04176           5 VVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVN   84 (163)
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCC
Confidence            36789999999999765     455667765 22233333  45678999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +++|.++..|+..+.+.....+.|+++|+||+|+.....  ..+ ...+.    ...+++++++||++|.|+.++|.+++
T Consensus        85 ~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~-~~~~~----~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          85 QQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAE-GRALA----EEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHH-HHHHH----HHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999988887654446899999999999854322  111 11111    12245799999999999999999998


Q ss_pred             HHH
Q 030931          151 STL  153 (169)
Q Consensus       151 ~~~  153 (169)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.97  E-value=1.4e-29  Score=171.98  Aligned_cols=148  Identities=21%  Similarity=0.295  Sum_probs=118.4

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +.+.+|+|||||++++     .+.+.||++..+.  .+..  ..+.+++|||+|++.+..++..++++++++|+|||+++
T Consensus         5 ~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~   84 (168)
T cd04119           5 SMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTD   84 (168)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCC
Confidence            5789999999999976     5577888886543  3333  56889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCC----CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPF----MLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~----~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      +++++....|+..+.+...    ..+.|+++|+||+|+.+.  .+.++.....     ...+++++++||++|.|++++|
T Consensus        85 ~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~  159 (168)
T cd04119          85 RQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWA-----ESKGFKYFETSACTGEGVNEMF  159 (168)
T ss_pred             HHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHH-----HHcCCeEEEEECCCCCCHHHHH
Confidence            9999999999998876432    257999999999998632  2222222211     2234679999999999999999


Q ss_pred             HHHHHHHH
Q 030931          147 DWLASTLK  154 (169)
Q Consensus       147 ~~l~~~~~  154 (169)
                      +++.+.+.
T Consensus       160 ~~l~~~l~  167 (168)
T cd04119         160 QTLFSSIV  167 (168)
T ss_pred             HHHHHHHh
Confidence            99998765

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.97  E-value=3.3e-29  Score=168.30  Aligned_cols=150  Identities=29%  Similarity=0.479  Sum_probs=127.7

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI   76 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~   76 (169)
                      |++.+|+|||||++++     ...+.||+++++..+..+.+.+.+||+||++.+..++..+++.++++++|+|+++..++
T Consensus         4 i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~   83 (159)
T cd04159           4 LVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTAL   83 (159)
T ss_pred             EEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHH
Confidence            5788999999999976     56688999988888888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      .....|+..++......+.|+++|+||+|+.+.....++...++........++++++||++|.|++++++++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159          84 EAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             HHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            888888888876544568999999999998766555555555554444455678999999999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.97  E-value=1.7e-30  Score=178.04  Aligned_cols=150  Identities=19%  Similarity=0.220  Sum_probs=112.0

Q ss_pred             CccccCCCCCceeeee-----ceeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVK-----FYLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~-----f~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+|+|||||+.+     |.+.+.||++..+. .+..  ..+++++|||+|++.+..++..+++++|++|+|||+++
T Consensus         5 ~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~   84 (174)
T cd01871           5 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS   84 (174)
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCC
Confidence            4678999999999965     56778888874432 2333  45889999999999999999999999999999999999


Q ss_pred             hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhh--------hCCCCCCCce-eEEEEeeeccCCC
Q 030931           73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEG--------LGLFDLKNRK-WHIQGTCALKGDG  141 (169)
Q Consensus        73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~--------~~~~~~~~~~-~~~~~~Sa~~~~g  141 (169)
                      +++|+.+. .|+..+...  .++.|+++|+||+|+.+... .+.+...        .+.......+ +++++|||++|+|
T Consensus        85 ~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  162 (174)
T cd01871          85 PASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKG  162 (174)
T ss_pred             HHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCC
Confidence            99999996 587766543  25799999999999954211 1111000        0000111222 4799999999999


Q ss_pred             HHHHHHHHHHH
Q 030931          142 LYEGLDWLAST  152 (169)
Q Consensus       142 i~~~~~~l~~~  152 (169)
                      ++++|+.++..
T Consensus       163 i~~~f~~l~~~  173 (174)
T cd01871         163 LKTVFDEAIRA  173 (174)
T ss_pred             HHHHHHHHHHh
Confidence            99999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.97  E-value=4.4e-30  Score=174.56  Aligned_cols=149  Identities=22%  Similarity=0.342  Sum_probs=117.7

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+|+|||||++++     ...+.||.+..+  ..+..+  .+++++||+||++++..++..++++++++++|||++
T Consensus         6 ~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   85 (166)
T cd01869           6 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT   85 (166)
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECc
Confidence            36789999999999986     345667777544  334443  578999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++++|..+..|+..+.+.. .++.|+++++||+|+....  ..++... +.    +..+++++++||++|.|++++|.++
T Consensus        86 ~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~v~~~~~~i  159 (166)
T cd01869          86 DQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQE-FA----DELGIPFLETSAKNATNVEQAFMTM  159 (166)
T ss_pred             CHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHH-HH----HHcCCeEEEEECCCCcCHHHHHHHH
Confidence            9999999999998885532 3578999999999986432  2222221 11    2335679999999999999999999


Q ss_pred             HHHHHh
Q 030931          150 ASTLKE  155 (169)
Q Consensus       150 ~~~~~~  155 (169)
                      ++.+.+
T Consensus       160 ~~~~~~  165 (166)
T cd01869         160 AREIKK  165 (166)
T ss_pred             HHHHHh
Confidence            988753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.96  E-value=3.8e-30  Score=174.47  Aligned_cols=150  Identities=15%  Similarity=0.174  Sum_probs=116.3

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+|+|||||+++|     ...+.||.+..+ ..+..  ..+++++|||||++++..++..+++.++++++|||+++
T Consensus         4 ~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~   83 (164)
T smart00173        4 VVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITD   83 (164)
T ss_pred             EEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCC
Confidence            36789999999999976     345556665322 22333  45889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +++|+.+..|...+.+.....+.|+++|+||+|+.+..  ..++.....     +..+.+++++||++|.|++++|++++
T Consensus        84 ~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~  158 (164)
T smart00173       84 RQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-----RQWGCPFLETSAKERVNVDEAFYDLV  158 (164)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-----HHcCCEEEEeecCCCCCHHHHHHHHH
Confidence            99999999998887664444579999999999986532  222221111     22336799999999999999999999


Q ss_pred             HHHHh
Q 030931          151 STLKE  155 (169)
Q Consensus       151 ~~~~~  155 (169)
                      +.+..
T Consensus       159 ~~~~~  163 (164)
T smart00173      159 REIRK  163 (164)
T ss_pred             HHHhh
Confidence            87653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04155 Arl3 Arl3 subfamily

Probab=99.96  E-value=2.6e-29  Score=171.78  Aligned_cols=150  Identities=38%  Similarity=0.692  Sum_probs=129.1

Q ss_pred             ccccCCCCCceeeeeceee----eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFYLL----FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+|+|||||++++...    +.||.|++...+...+..+.+||++|+..+...+..+++.++++++|+|+++..++.
T Consensus        19 i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~   98 (173)
T cd04155          19 ILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLE   98 (173)
T ss_pred             EEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHH
Confidence            6789999999999988544    678899888888888999999999999998889999999999999999999988898


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ....++..+++.....++|+++++||+|+.+....+++.+.++......+.++++++||++|+|++++|+|+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155          99 EAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             HHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence            88888888776544457999999999999776666777777776555556677899999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.96  E-value=1.9e-29  Score=181.08  Aligned_cols=153  Identities=15%  Similarity=0.079  Sum_probs=120.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeE-EEEEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRF-NVEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~-~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||+++|     ...+.||++. ....+..  ..+.++||||+|++.|..++..++..+|++|+|||++++
T Consensus         5 vlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~   84 (247)
T cd04143           5 VLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNR   84 (247)
T ss_pred             EECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCH
Confidence            5779999999999987     4567788862 2233444  458899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCC--------CCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHH
Q 030931           74 ERIGKAKQEFQAIIKDP--------FMLNSVILVFANKQDMKG--AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  143 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~--------~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  143 (169)
                      ++|+.+..|+.++....        ...+.|+++|+||+|+..  ....+++.+..+.    ...+.++++||++|.|++
T Consensus        85 ~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----~~~~~~~evSAktg~gI~  160 (247)
T cd04143          85 ESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----DENCAYFEVSAKKNSNLD  160 (247)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----cCCCEEEEEeCCCCCCHH
Confidence            99999999988886531        235799999999999964  3344554444321    224679999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 030931          144 EGLDWLASTLKEMRA  158 (169)
Q Consensus       144 ~~~~~l~~~~~~~~~  158 (169)
                      ++|+++...+.-...
T Consensus       161 elf~~L~~~~~~p~e  175 (247)
T cd04143         161 EMFRALFSLAKLPNE  175 (247)
T ss_pred             HHHHHHHHHhccccc
Confidence            999999987654443

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.96  E-value=2.3e-30  Score=180.03  Aligned_cols=148  Identities=12%  Similarity=0.067  Sum_probs=109.3

Q ss_pred             CccccCCCCCceeee-e----------ceeeeeeeeeE-E-EE-----------EEEECCEEEEEEEcCCCCCchhhHHh
Q 030931            1 MLRVKQPYCTSCTLV-K----------FYLLFLLLVRF-N-VE-----------KVQYKNVIFTVWDVGGQEKLRPLWRH   56 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~-~----------f~~~~~~t~~~-~-~~-----------~~~~~~~~~~i~D~~G~~~~~~~~~~   56 (169)
                      ++++..|+|||||+. +          |.+.+.||++. . +.           .++...+++++|||+|++.  .+...
T Consensus         6 v~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~~~~   83 (195)
T cd01873           6 VVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KDRRF   83 (195)
T ss_pred             EEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hhhcc
Confidence            367899999999995 3          34567899863 2 21           2334579999999999975  35667


Q ss_pred             hccCCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----------------HhHHHhhh
Q 030931           57 YFNNTDGLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMT----------------PMEVCEGL  119 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----------------~~~~~~~~  119 (169)
                      ++++++++|+|||++++.+|+.+. .|+..+.+..  ++.|+++||||+|+.+...                ...+....
T Consensus        84 ~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e  161 (195)
T cd01873          84 AYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPET  161 (195)
T ss_pred             cCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHH
Confidence            899999999999999999999997 5888775433  4789999999999863100                01111111


Q ss_pred             CCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931          120 GLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus       120 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      +...++..+++|+||||++|.||+++|+.+++.
T Consensus       162 ~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         162 GRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            222224456789999999999999999999864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.96  E-value=5.7e-30  Score=173.46  Aligned_cols=148  Identities=15%  Similarity=0.161  Sum_probs=115.6

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+++|||||+++|     ...+.||.+..+. .+..  ..+.+++|||||++++..++..++++++++++|||+++
T Consensus         6 ~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~   85 (164)
T cd04145           6 VVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTD   85 (164)
T ss_pred             EEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence            36789999999999986     4555667664332 2333  45789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+|+.+..|+..+.+.....+.|+++++||+|+....  ..++.. .+    .+..+++++++||++|.|+.++|++++
T Consensus        86 ~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          86 RGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQ-EL----ARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHH-HH----HHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999888764444578999999999986532  222211 11    122345799999999999999999998


Q ss_pred             HHH
Q 030931          151 STL  153 (169)
Q Consensus       151 ~~~  153 (169)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04140 ARHI_like ARHI subfamily

Probab=99.96  E-value=9e-30  Score=172.99  Aligned_cols=145  Identities=12%  Similarity=0.096  Sum_probs=112.4

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE---EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK---VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||+++|     ...+.||.+..+..   .+...+.+++|||+|++++..++..+++.++++++|||++++
T Consensus         6 ~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~   85 (165)
T cd04140           6 VFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSK   85 (165)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCH
Confidence            5779999999999976     45667887744432   233568899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKD--PFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~--~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++++.+..|+..+.+.  ...++.|+++|+||+|+.....  ..+. ..+    ....++++++|||++|.|++++|+++
T Consensus        86 ~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~----~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          86 QSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEG-AAC----ATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHH-HHH----HHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            9999999887766442  1235799999999999965221  1111 111    12234569999999999999999999


Q ss_pred             HH
Q 030931          150 AS  151 (169)
Q Consensus       150 ~~  151 (169)
                      +.
T Consensus       161 ~~  162 (165)
T cd04140         161 LN  162 (165)
T ss_pred             Hh
Confidence            75

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04124 RabL2 RabL2 subfamily

Probab=99.96  E-value=6e-29  Score=168.35  Aligned_cols=148  Identities=15%  Similarity=0.185  Sum_probs=115.8

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE----EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+|+|||||+++|     .+.+.+|.+.....    ++...+.+++|||+|++++..++..+++.+|++++|||++
T Consensus         4 ~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~   83 (161)
T cd04124           4 ILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVT   83 (161)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECC
Confidence            36789999999999976     44555666644332    2335678999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ++.+++.+..|+..+.+.  .++.|+++|+||+|+.... ..+. ..+    ....+++++++||++|.|++++|+.+.+
T Consensus        84 ~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~-~~~----~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  155 (161)
T cd04124          84 RKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKK-FNF----AEKHNLPLYYVSAADGTNVVKLFQDAIK  155 (161)
T ss_pred             CHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHH-HHH----HHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999888553  2478999999999985321 1111 111    1223467999999999999999999998


Q ss_pred             HHHhh
Q 030931          152 TLKEM  156 (169)
Q Consensus       152 ~~~~~  156 (169)
                      .+.++
T Consensus       156 ~~~~~  160 (161)
T cd04124         156 LAVSY  160 (161)
T ss_pred             HHHhc
Confidence            87765

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04125 RabA_like RabA-like subfamily

Probab=99.96  E-value=2.3e-29  Score=174.41  Aligned_cols=151  Identities=19%  Similarity=0.218  Sum_probs=119.4

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+|+|||||+++|     .+.+.||++..+.  .+..  ..+.+++||++|++++..++..+++++|++++|||++
T Consensus         4 ~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~   83 (188)
T cd04125           4 VIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVT   83 (188)
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECc
Confidence            36789999999999976     4446788885443  3333  4578899999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++++|..+..|+..+.... ..+.|+++++||+|+.+..  +..+. ..+.    ...+++++++||++|.|++++|+++
T Consensus        84 ~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~evSa~~~~~i~~~f~~l  157 (188)
T cd04125          84 DQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIA-KSFC----DSLNIPFFETSAKQSINVEEAFILL  157 (188)
T ss_pred             CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHH-HHHH----HHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999998886532 2468999999999986432  22221 1111    2234579999999999999999999


Q ss_pred             HHHHHhhh
Q 030931          150 ASTLKEMR  157 (169)
Q Consensus       150 ~~~~~~~~  157 (169)
                      ++.+.++.
T Consensus       158 ~~~~~~~~  165 (188)
T cd04125         158 VKLIIKRL  165 (188)
T ss_pred             HHHHHHHh
Confidence            99888764

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.96  E-value=1.7e-29  Score=172.85  Aligned_cols=153  Identities=18%  Similarity=0.179  Sum_probs=114.1

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+|+|||||+++|     ...+.||.+..+. .+..  ..+.+++|||||++.+..++..+++++|++|+|||+++
T Consensus         2 ~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~   81 (174)
T smart00174        2 VVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDS   81 (174)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCC
Confidence            47889999999999976     4556677765443 2333  45789999999999999999999999999999999999


Q ss_pred             hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHH--------hhhCCCCCCCce-eEEEEeeeccCCC
Q 030931           73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVC--------EGLGLFDLKNRK-WHIQGTCALKGDG  141 (169)
Q Consensus        73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~--------~~~~~~~~~~~~-~~~~~~Sa~~~~g  141 (169)
                      +++|+.+. .|+..+.+..  ++.|+++|+||+|+..... ..++.        ........+..+ .+|+++||++|.|
T Consensus        82 ~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  159 (174)
T smart00174       82 PASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG  159 (174)
T ss_pred             HHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence            99999986 5888775533  5899999999999864211 00000        000000112223 3799999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 030931          142 LYEGLDWLASTLKE  155 (169)
Q Consensus       142 i~~~~~~l~~~~~~  155 (169)
                      ++++|+.+++.+.+
T Consensus       160 v~~lf~~l~~~~~~  173 (174)
T smart00174      160 VREVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999987643

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.96  E-value=1.4e-29  Score=170.84  Aligned_cols=145  Identities=10%  Similarity=0.086  Sum_probs=107.6

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE   74 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~   74 (169)
                      +++..|+|||||+++|     .+.+.|+.+.....+..++  +.+++|||+|++.     ..+++++|++++|||+++++
T Consensus         5 vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~   79 (158)
T cd04103           5 IVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEA   79 (158)
T ss_pred             EECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHH
Confidence            5779999999999986     3445555554444555544  7799999999974     34678899999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCC-ceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           75 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKN-RKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      +|+.+..|+.++......++.|+++||||+|+.... .+++....+....+. ..+.|++|||++|.||+++|+++++.
T Consensus        80 sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103          80 SFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence            999999999998776555679999999999984311 111211111111112 24679999999999999999999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PLN03110 Rab GTPase; Provisional

Probab=99.96  E-value=2.4e-29  Score=177.79  Aligned_cols=152  Identities=20%  Similarity=0.264  Sum_probs=121.3

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+|+|||||+++|     ...+.||++.++.  .+..  ..+.+++||++|++++..++..+++.++++++|||++
T Consensus        16 ~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~   95 (216)
T PLN03110         16 VLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIT   95 (216)
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECC
Confidence            36789999999999976     4466788887653  3444  3579999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      ++.+|+.+..|+..+.... ..+.|+++|+||+|+...... .+....+.    ...+++++++||++|.|++++|++++
T Consensus        96 ~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~----~~~~~~~~e~SA~~g~~v~~lf~~l~  170 (216)
T PLN03110         96 KRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALA----EKEGLSFLETSALEATNVEKAFQTIL  170 (216)
T ss_pred             ChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHH----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999998876532 257999999999998643221 22222222    23456899999999999999999999


Q ss_pred             HHHHhhh
Q 030931          151 STLKEMR  157 (169)
Q Consensus       151 ~~~~~~~  157 (169)
                      ..+.+..
T Consensus       171 ~~i~~~~  177 (216)
T PLN03110        171 LEIYHII  177 (216)
T ss_pred             HHHHHHh
Confidence            9887743

>cd04112 Rab26 Rab26 subfamily

Probab=99.96  E-value=2.2e-29  Score=174.94  Aligned_cols=151  Identities=23%  Similarity=0.338  Sum_probs=119.4

Q ss_pred             ccccCCCCCceeeeec------eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            2 LRVKQPYCTSCTLVKF------YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f------~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      |++.+++|||||+++|      ...+.||.+.++..  +..  ..+.++||||||++++...+..+++.++++|+|||++
T Consensus         5 vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~   84 (191)
T cd04112           5 LLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDIT   84 (191)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECC
Confidence            6789999999999976      23567787765533  333  4578999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++++|+.+..|+..+.+.. ..+.|+++|+||+|+...  ....+... +.    ...+++|+++||++|.|++++|.++
T Consensus        85 ~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~-l~----~~~~~~~~e~Sa~~~~~v~~l~~~l  158 (191)
T cd04112          85 NKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGER-LA----KEYGVPFMETSAKTGLNVELAFTAV  158 (191)
T ss_pred             CHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999998886542 247899999999998632  22222221 11    2234579999999999999999999


Q ss_pred             HHHHHhhhc
Q 030931          150 ASTLKEMRA  158 (169)
Q Consensus       150 ~~~~~~~~~  158 (169)
                      .+.+.+...
T Consensus       159 ~~~~~~~~~  167 (191)
T cd04112         159 AKELKHRKY  167 (191)
T ss_pred             HHHHHHhcc
Confidence            999888753

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04116 Rab9 Rab9 subfamily

Probab=99.96  E-value=8e-29  Score=168.96  Aligned_cols=147  Identities=14%  Similarity=0.167  Sum_probs=115.2

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+++|||||+++|     .+.+.||.+..+.  .+..  ..+.+++||+||++++..++..++++++++++|||+++
T Consensus        10 vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~   89 (170)
T cd04116          10 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDD   89 (170)
T ss_pred             EECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCC
Confidence            5789999999999987     4556778876543  3333  56789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCC---CCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPF---MLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  148 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~---~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  148 (169)
                      +++++.+..|..+++....   ..+.|+++|+||+|+... ...++..+...    .....+++++||++|.|+.++|++
T Consensus        90 ~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~~~~  165 (170)
T cd04116          90 SQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR----ENGDYPYFETSAKDATNVAAAFEE  165 (170)
T ss_pred             HHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH----HCCCCeEEEEECCCCCCHHHHHHH
Confidence            9999999999888765322   246899999999998642 23333332221    111246999999999999999999


Q ss_pred             HHHH
Q 030931          149 LAST  152 (169)
Q Consensus       149 l~~~  152 (169)
                      +++.
T Consensus       166 ~~~~  169 (170)
T cd04116         166 AVRR  169 (170)
T ss_pred             HHhh
Confidence            9864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=3.1e-29  Score=169.68  Aligned_cols=148  Identities=20%  Similarity=0.244  Sum_probs=121.3

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEEE--EE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKV--QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+|+|||||+++|     .+.+.||.+.+....  ..  ..+.+++||++|++++..++..++++++++|+|||++
T Consensus         3 ~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~   82 (162)
T PF00071_consen    3 VVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVT   82 (162)
T ss_dssp             EEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETT
T ss_pred             EEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46789999999999975     678888987665443  33  5788999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG--AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++++|+.+..|+..+..... .+.|++++|||.|+.+  ..+.++.....     ...+.+|+++||+++.||.++|..+
T Consensus        83 ~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~~~f~~~  156 (162)
T PF00071_consen   83 DEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFA-----KELGVPYFEVSAKNGENVKEIFQEL  156 (162)
T ss_dssp             BHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHH-----HHTTSEEEEEBTTTTTTHHHHHHHH
T ss_pred             cccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHH-----HHhCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999876443 4799999999999875  33433322211     2233679999999999999999999


Q ss_pred             HHHHH
Q 030931          150 ASTLK  154 (169)
Q Consensus       150 ~~~~~  154 (169)
                      ++.+.
T Consensus       157 i~~i~  161 (162)
T PF00071_consen  157 IRKIL  161 (162)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98774

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01866 Rab2 Rab2 subfamily

Probab=99.96  E-value=3.1e-29  Score=170.83  Aligned_cols=149  Identities=21%  Similarity=0.283  Sum_probs=117.7

Q ss_pred             CccccCCCCCceeeeece-----eeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKFY-----LLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~-----~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+++|||||++++.     ..+.+|.+.++.  .+..  ....+.+||++|++++..++..+++.+|++++|||++
T Consensus         8 ~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~   87 (168)
T cd01866           8 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT   87 (168)
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECC
Confidence            367899999999999873     444566665442  2333  4578999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++++++.+..|+..+.+.. .++.|+++|+||.|+.+.  .+.++.....     ...+++++++||++++|++++|+++
T Consensus        88 ~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866          88 RRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFA-----KEHGLIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             CHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999886542 368999999999998643  2333332221     2335679999999999999999999


Q ss_pred             HHHHHh
Q 030931          150 ASTLKE  155 (169)
Q Consensus       150 ~~~~~~  155 (169)
                      ++.+.+
T Consensus       162 ~~~~~~  167 (168)
T cd01866         162 AKEIYE  167 (168)
T ss_pred             HHHHHh
Confidence            988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.96  E-value=2.3e-29  Score=170.23  Aligned_cols=143  Identities=16%  Similarity=0.203  Sum_probs=114.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   70 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~   70 (169)
                      +++.+++|||||++++     .+.+.||++.++..  +..    ..+++++|||||++++..++..++++++++++|||+
T Consensus         5 ~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~   84 (162)
T cd04106           5 VVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFST   84 (162)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEEC
Confidence            6779999999999986     34667888876533  332    468899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931           71 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  148 (169)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  148 (169)
                      +++++++.+..|+..+....  .+.|+++|+||+|+....  ..++.....     ...+++++++||++|.|++++|++
T Consensus        85 ~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~~~  157 (162)
T cd04106          85 TDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALA-----KRLQLPLFRTSVKDDFNVTELFEY  157 (162)
T ss_pred             CCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999998875432  579999999999986532  222222211     223457999999999999999999


Q ss_pred             HHH
Q 030931          149 LAS  151 (169)
Q Consensus       149 l~~  151 (169)
                      +..
T Consensus       158 l~~  160 (162)
T cd04106         158 LAE  160 (162)
T ss_pred             HHH
Confidence            875

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.96  E-value=5.5e-29  Score=172.28  Aligned_cols=151  Identities=16%  Similarity=0.169  Sum_probs=117.4

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE-EEE---CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-VQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+|+|||||+++|     ...+.||++.++.. +..   ..+.+++|||||++++..+++.+++++|++++|||++
T Consensus         4 ~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~   83 (187)
T cd04132           4 VVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVD   83 (187)
T ss_pred             EEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECC
Confidence            46789999999999976     45667788765432 333   3578999999999999999999999999999999999


Q ss_pred             ChhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC------CHhHHHhhhCCCCCCCcee-EEEEeeeccCCCHH
Q 030931           72 DRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAM------TPMEVCEGLGLFDLKNRKW-HIQGTCALKGDGLY  143 (169)
Q Consensus        72 ~~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~  143 (169)
                      ++++|+.+. .|+..+...  .++.|+++|+||+|+....      ...+... +    ....+. +++++||++|.|+.
T Consensus        84 ~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~e~Sa~~~~~v~  156 (187)
T cd04132          84 NPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAES-V----AKKQGAFAYLECSAKTMENVE  156 (187)
T ss_pred             CHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHH-H----HHHcCCcEEEEccCCCCCCHH
Confidence            999999986 587776443  2578999999999986432      1222111 1    112233 69999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 030931          144 EGLDWLASTLKEMRA  158 (169)
Q Consensus       144 ~~~~~l~~~~~~~~~  158 (169)
                      ++|..+.+.+.....
T Consensus       157 ~~f~~l~~~~~~~~~  171 (187)
T cd04132         157 EVFDTAIEEALKKEG  171 (187)
T ss_pred             HHHHHHHHHHHhhhh
Confidence            999999998887653

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=8.2e-31  Score=169.96  Aligned_cols=152  Identities=19%  Similarity=0.219  Sum_probs=118.6

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEE--EECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKV--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      |++..-+|||||+-||     ..+..+|+...+  ..+  ......+.||||+||++|..+-+.||++++++++|||++|
T Consensus        18 LLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITD   97 (218)
T KOG0088|consen   18 LLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITD   97 (218)
T ss_pred             EEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccc
Confidence            5667778999999976     344445554333  333  3356789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +++|..++.|..++.. +....+-+++||||+|+.+...  .++..     ..+.+-+..|+++||+.+.||.++|..++
T Consensus        98 rdSFqKVKnWV~Elr~-mlGnei~l~IVGNKiDLEeeR~Vt~qeAe-----~YAesvGA~y~eTSAk~N~Gi~elFe~Lt  171 (218)
T KOG0088|consen   98 RDSFQKVKNWVLELRT-MLGNEIELLIVGNKIDLEEERQVTRQEAE-----AYAESVGALYMETSAKDNVGISELFESLT  171 (218)
T ss_pred             hHHHHHHHHHHHHHHH-HhCCeeEEEEecCcccHHHhhhhhHHHHH-----HHHHhhchhheecccccccCHHHHHHHHH
Confidence            9999999999999854 2334689999999999976432  22211     12244556699999999999999999999


Q ss_pred             HHHHhhhcc
Q 030931          151 STLKEMRAA  159 (169)
Q Consensus       151 ~~~~~~~~~  159 (169)
                      ..+.+..+.
T Consensus       172 ~~MiE~~s~  180 (218)
T KOG0088|consen  172 AKMIEHSSQ  180 (218)
T ss_pred             HHHHHHhhh
Confidence            988886543

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.96  E-value=3.2e-29  Score=171.10  Aligned_cols=148  Identities=16%  Similarity=0.278  Sum_probs=116.9

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCch-hhHHhhccCCCEEEEEEECC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLR-PLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~-~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +++.+|+|||||+++|     ...+.||++..+.  .+..  ..+.+++||++|++++. .++..+++++|++++|||++
T Consensus         7 vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~   86 (170)
T cd04115           7 VIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVT   86 (170)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECC
Confidence            5689999999999976     4566778876543  3444  35889999999999886 57888999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeecc---CCCHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALK---GDGLYEGLD  147 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~~~~  147 (169)
                      ++.+|..+..|+..+.......+.|+++|+||+|+..... ..+....+.    +...++|+++||++   +.|++++|.
T Consensus        87 ~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~~~~i~~~f~  162 (170)
T cd04115          87 NMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFA----DAHSMPLFETSAKDPSENDHVEAIFM  162 (170)
T ss_pred             CHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHH----HHcCCcEEEEeccCCcCCCCHHHHHH
Confidence            9999999999998887654446899999999999865332 122222222    22346799999999   999999999


Q ss_pred             HHHHHH
Q 030931          148 WLASTL  153 (169)
Q Consensus       148 ~l~~~~  153 (169)
                      +++..+
T Consensus       163 ~l~~~~  168 (170)
T cd04115         163 TLAHKL  168 (170)
T ss_pred             HHHHHh
Confidence            998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.96  E-value=5.1e-29  Score=168.91  Aligned_cols=147  Identities=16%  Similarity=0.212  Sum_probs=115.5

Q ss_pred             CccccCCCCCceeeeec-------eeeeeeeeeEEEEE--EEE---CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEE
Q 030931            1 MLRVKQPYCTSCTLVKF-------YLLFLLLVRFNVEK--VQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   68 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~--~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~   68 (169)
                      ++++.+|+|||||++++       .+.+.||.+.++..  +..   ..+.+.+|||||++.+..++..+++++|++++||
T Consensus         4 ~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~   83 (164)
T cd04101           4 AVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVY   83 (164)
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            36789999999999865       35677888866532  322   4589999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931           69 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME-VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus        69 d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                      |++++++++.+..|+..+....  .+.|+++|+||+|+.+...... ....+.    ...+++++++||++|.|++++|+
T Consensus        84 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~  157 (164)
T cd04101          84 DVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA----QANQLKFFKTSALRGVGYEEPFE  157 (164)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH----HHcCCeEEEEeCCCCCChHHHHH
Confidence            9999999999999998876543  5689999999999865422111 111111    22345799999999999999999


Q ss_pred             HHHHHH
Q 030931          148 WLASTL  153 (169)
Q Consensus       148 ~l~~~~  153 (169)
                      ++.+.+
T Consensus       158 ~l~~~~  163 (164)
T cd04101         158 SLARAF  163 (164)
T ss_pred             HHHHHh
Confidence            998764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01868 Rab11_like Rab11-like

Probab=99.96  E-value=5e-29  Score=169.16  Aligned_cols=146  Identities=20%  Similarity=0.274  Sum_probs=116.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+++|||||++++     ...+.||.+.++.  .+..+  .+.+++||+||++++..++..+++.++++++|||+++
T Consensus         8 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   87 (165)
T cd01868           8 LIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK   87 (165)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcC
Confidence            5789999999999986     4466788876543  34443  4689999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.++..+.+|+..+.+.. ..+.|+++|+||+|+.+..  ..++.....     ...+++++++||++|.|+.++|+++.
T Consensus        88 ~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          88 KQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFA-----EKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             HHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            999999999999886543 2368999999999986532  222322221     12346799999999999999999998


Q ss_pred             HHH
Q 030931          151 STL  153 (169)
Q Consensus       151 ~~~  153 (169)
                      ..+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04118 Rab24 Rab24 subfamily

Probab=99.96  E-value=1.3e-28  Score=171.21  Aligned_cols=150  Identities=15%  Similarity=0.176  Sum_probs=117.1

Q ss_pred             CccccCCCCCceeeeece------eeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931            1 MLRVKQPYCTSCTLVKFY------LLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   70 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~------~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~   70 (169)
                      ++++.+++|||||+++|.      ..+.||++..+.  .+..  ..+.+++||++|++++..++..+++++|++++|||+
T Consensus         4 ~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~   83 (193)
T cd04118           4 VMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDL   83 (193)
T ss_pred             EEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEEC
Confidence            367899999999999862      357778885542  3444  357788999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC------CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           71 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM------TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      +++++|+.+..|+..+....  ++.|+++|+||+|+.+..      ...+... +    ....+++++++||++|.|+++
T Consensus        84 ~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~gv~~  156 (193)
T cd04118          84 TDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD-F----ADEIKAQHFETSSKTGQNVDE  156 (193)
T ss_pred             CCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHH-H----HHHcCCeEEEEeCCCCCCHHH
Confidence            99999999999998885532  478999999999985421      1111111 1    122345789999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030931          145 GLDWLASTLKEMR  157 (169)
Q Consensus       145 ~~~~l~~~~~~~~  157 (169)
                      +|+++.+.+.+..
T Consensus       157 l~~~i~~~~~~~~  169 (193)
T cd04118         157 LFQKVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887653

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04113 Rab4 Rab4 subfamily

Probab=99.96  E-value=5.4e-29  Score=168.37  Aligned_cols=146  Identities=21%  Similarity=0.280  Sum_probs=115.0

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+++|||||++++     ...+.+|.+..+..  +..  ..+.+++||+||++.+..++..+++.++++++|||++
T Consensus         4 ~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   83 (161)
T cd04113           4 IIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDIT   83 (161)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECC
Confidence            36789999999999986     45556677654432  333  3578999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      +++++..+..|+..+.... .++.|+++++||+|+....  +.++.....     ...+++++++||+++.|++++|+++
T Consensus        84 ~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~~  157 (161)
T cd04113          84 NRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFA-----QENGLLFLETSALTGENVEEAFLKC  157 (161)
T ss_pred             CHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHHHHH
Confidence            9999999999988775432 3589999999999986532  222322221     2234679999999999999999999


Q ss_pred             HHH
Q 030931          150 AST  152 (169)
Q Consensus       150 ~~~  152 (169)
                      ++.
T Consensus       158 ~~~  160 (161)
T cd04113         158 ARS  160 (161)
T ss_pred             HHh
Confidence            875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01864 Rab19 Rab19 subfamily

Probab=99.96  E-value=4e-28  Score=164.83  Aligned_cols=146  Identities=21%  Similarity=0.303  Sum_probs=113.4

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEE--EEEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFN--VEKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||++++     .+.+.+|.+..  ...+..++  +.+++|||||++.+..++..+++.+|++++|||+++
T Consensus         8 vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~   87 (165)
T cd01864           8 LIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITR   87 (165)
T ss_pred             EECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcC
Confidence            5789999999999976     44556777643  34455554  688999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+|..+..|+..+.... ..+.|+++|+||+|+.+..  ...+......    ......++++||++|.|++++|++++
T Consensus        88 ~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~~~~l~  162 (165)
T cd01864          88 RSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAE----KNGMLAVLETSAKESQNVEEAFLLMA  162 (165)
T ss_pred             HHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHH----HcCCcEEEEEECCCCCCHHHHHHHHH
Confidence            999999999999886532 3579999999999986432  2222211111    11123589999999999999999998


Q ss_pred             HH
Q 030931          151 ST  152 (169)
Q Consensus       151 ~~  152 (169)
                      +.
T Consensus       163 ~~  164 (165)
T cd01864         163 TE  164 (165)
T ss_pred             Hh
Confidence            75

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.8e-28  Score=155.11  Aligned_cols=154  Identities=44%  Similarity=0.718  Sum_probs=142.5

Q ss_pred             cccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHH
Q 030931            3 RVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK   78 (169)
Q Consensus         3 ~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~   78 (169)
                      ++=.|.|||+++.|.    .....||+|+++.++.+++.++++||.+|+-..+..|+.||.+.+++|+|+|.+|++++.-
T Consensus        24 lgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~  103 (182)
T KOG0072|consen   24 LGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISI  103 (182)
T ss_pred             eeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhh
Confidence            446899999999987    4567899999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931           79 AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus        79 ~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      ....+..++.+..+++..+++++||+|........|+...+++..++++.+.++++||.+|+|+++.++|+.+.+.++
T Consensus       104 a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  104 AGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             hHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence            888888899988888999999999999988888889999999888899999999999999999999999999987754

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.95  E-value=1.7e-28  Score=166.16  Aligned_cols=149  Identities=20%  Similarity=0.303  Sum_probs=118.0

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+++|||||++++     ...+.+|.+..+.  .+...  .+.+++||+||++.+..++..+++.+|++++|||++
T Consensus         4 ~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~   83 (164)
T smart00175        4 ILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDIT   83 (164)
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECC
Confidence            46789999999999987     3455567775543  34443  378999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++.+++.+.+|+..+..... +++|+++++||+|+....  ..+.... +.    ...+++++++||++|.|++++|+++
T Consensus        84 ~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~e~Sa~~~~~i~~l~~~i  157 (164)
T smart00175       84 NRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEA-FA----EEHGLPFFETSAKTNTNVEEAFEEL  157 (164)
T ss_pred             CHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999988865432 589999999999986532  2232222 21    2334679999999999999999999


Q ss_pred             HHHHHh
Q 030931          150 ASTLKE  155 (169)
Q Consensus       150 ~~~~~~  155 (169)
                      .+.+.+
T Consensus       158 ~~~~~~  163 (164)
T smart00175      158 AREILK  163 (164)
T ss_pred             HHHHhh
Confidence            998754

Rab GTPases are implicated in vesicle trafficking.

>cd04177 RSR1 RSR1 subgroup

Probab=99.95  E-value=1.1e-28  Score=168.11  Aligned_cols=150  Identities=13%  Similarity=0.121  Sum_probs=116.7

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||+++|     ...+.||.+..+ ..+..  ..+.+++|||||+++|..+++.+++.++++++|||++++
T Consensus         6 liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~   85 (168)
T cd04177           6 VLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSE   85 (168)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCH
Confidence            6789999999999986     355667776443 23333  457899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ++++....|...+.+.....+.|+++++||+|+.+..  ..++... +..   .....+++++||++|.|++++|++++.
T Consensus        86 ~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~-~~~---~~~~~~~~~~SA~~~~~i~~~f~~i~~  161 (168)
T cd04177          86 ASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS-LSQ---QWGNVPFYETSARKRTNVDEVFIDLVR  161 (168)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH-HHH---HcCCceEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999998888664444589999999999986532  2222111 110   111257999999999999999999998


Q ss_pred             HHHh
Q 030931          152 TLKE  155 (169)
Q Consensus       152 ~~~~  155 (169)
                      .+..
T Consensus       162 ~~~~  165 (168)
T cd04177         162 QIIC  165 (168)
T ss_pred             HHhh
Confidence            7654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PLN03118 Rab family protein; Provisional

Probab=99.95  E-value=3.8e-28  Score=171.17  Aligned_cols=152  Identities=22%  Similarity=0.258  Sum_probs=116.0

Q ss_pred             CccccCCCCCceeeeece----eeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKFY----LLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+|+|||||+++|.    ..+.||.+..+.  .+..  ..+.+.+|||||++++..++..+++.++++++|||+++
T Consensus        18 ~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~   97 (211)
T PLN03118         18 LLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTR   97 (211)
T ss_pred             EEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC
Confidence            367899999999999873    466677776543  3443  35789999999999999999999999999999999999


Q ss_pred             hhhHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           73 RERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        73 ~~~~~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      +++|..+.. |...+.......+.|+++|+||+|+.....  .++... +    ....+++|+++||+++.|++++|+++
T Consensus        98 ~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~-~----~~~~~~~~~e~SAk~~~~v~~l~~~l  172 (211)
T PLN03118         98 RETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA-L----AKEHGCLFLECSAKTRENVEQCFEEL  172 (211)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH-H----HHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999876 444332222335689999999999865322  222211 1    12234679999999999999999999


Q ss_pred             HHHHHhhh
Q 030931          150 ASTLKEMR  157 (169)
Q Consensus       150 ~~~~~~~~  157 (169)
                      ...+.+..
T Consensus       173 ~~~~~~~~  180 (211)
T PLN03118        173 ALKIMEVP  180 (211)
T ss_pred             HHHHHhhh
Confidence            99887754

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=8.8e-29  Score=157.99  Aligned_cols=154  Identities=18%  Similarity=0.243  Sum_probs=125.0

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE----EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++..|.|||+|+++|     ..+...|+|+.+.+    +...+++++||||+|+++|+...+.|++++.+.++|||++
T Consensus        15 iiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvydit   94 (215)
T KOG0097|consen   15 IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT   94 (215)
T ss_pred             EEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEeh
Confidence            35778999999999987     34566788876644    3447899999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      .+.+++.+..|+.+... ...++..+++++||.|+....+. -+-.+.+    .+..+.-++++||++|+|+++.|-+..
T Consensus        95 rrstynhlsswl~dar~-ltnpnt~i~lignkadle~qrdv~yeeak~f----aeengl~fle~saktg~nvedafle~a  169 (215)
T KOG0097|consen   95 RRSTYNHLSSWLTDARN-LTNPNTVIFLIGNKADLESQRDVTYEEAKEF----AEENGLMFLEASAKTGQNVEDAFLETA  169 (215)
T ss_pred             hhhhhhhHHHHHhhhhc-cCCCceEEEEecchhhhhhcccCcHHHHHHH----HhhcCeEEEEecccccCcHHHHHHHHH
Confidence            99999999999998854 33468899999999999765432 1222222    244566799999999999999999999


Q ss_pred             HHHHhhhcc
Q 030931          151 STLKEMRAA  159 (169)
Q Consensus       151 ~~~~~~~~~  159 (169)
                      +.+.+..+.
T Consensus       170 kkiyqniqd  178 (215)
T KOG0097|consen  170 KKIYQNIQD  178 (215)
T ss_pred             HHHHHhhhc
Confidence            888876543

>cd01892 Miro2 Miro2 subfamily

Probab=99.95  E-value=1.4e-27  Score=162.91  Aligned_cols=144  Identities=19%  Similarity=0.152  Sum_probs=114.0

Q ss_pred             ccccCCCCCceeeeec-----e-eeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            2 LRVKQPYCTSCTLVKF-----Y-LLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~-~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +++.+|+|||||+++|     . ..+.||++..+  ..+..  ..+.+.+||++|++.+..++..+++++|++++|||++
T Consensus         9 ~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~   88 (169)
T cd01892           9 VLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSS   88 (169)
T ss_pred             EECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCC
Confidence            6789999999999987     4 56778888544  33444  3478999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-----CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-----TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      ++.+|+.+..|+..+..   ..+.|+++|+||+|+.+..     ..+++.+.++..       .++++||++|.|++++|
T Consensus        89 ~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~Sa~~~~~v~~lf  158 (169)
T cd01892          89 DPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLP-------PPLHFSSKLGDSSNELF  158 (169)
T ss_pred             CHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCC-------CCEEEEeccCccHHHHH
Confidence            99999999888876532   2379999999999985432     123333333221       26899999999999999


Q ss_pred             HHHHHHHHh
Q 030931          147 DWLASTLKE  155 (169)
Q Consensus       147 ~~l~~~~~~  155 (169)
                      +.+.+.+..
T Consensus       159 ~~l~~~~~~  167 (169)
T cd01892         159 TKLATAAQY  167 (169)
T ss_pred             HHHHHHhhC
Confidence            999988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01861 Rab6 Rab6 subfamily

Probab=99.95  E-value=6.6e-28  Score=162.93  Aligned_cols=145  Identities=18%  Similarity=0.260  Sum_probs=113.7

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+++|||||++++     ...+.|+.+.++  ..+..+  .+++++||+||++++..++..+++.++++++|||+++
T Consensus         5 liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   84 (161)
T cd01861           5 FLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN   84 (161)
T ss_pred             EECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcC
Confidence            6789999999999976     345566666544  334443  4679999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +++|..+..|+..+..... .+.|+++++||+|+.+..  ..++.....     +..+++++++||+++.|++++|++++
T Consensus        85 ~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~~~i~  158 (161)
T cd01861          85 RQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKA-----KELNAMFIETSAKAGHNVKELFRKIA  158 (161)
T ss_pred             HHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhccccCccCHHHHHHHH-----HHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999998865432 379999999999995332  222222211     22346799999999999999999998


Q ss_pred             HH
Q 030931          151 ST  152 (169)
Q Consensus       151 ~~  152 (169)
                      +.
T Consensus       159 ~~  160 (161)
T cd01861         159 SA  160 (161)
T ss_pred             Hh
Confidence            75

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=6.2e-28  Score=165.34  Aligned_cols=137  Identities=20%  Similarity=0.279  Sum_probs=110.8

Q ss_pred             eceeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCC
Q 030931           16 KFYLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF   91 (169)
Q Consensus        16 ~f~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~   91 (169)
                      .|.+.+.||+|.++..  +..  +.+++.||||+|++++..++..++++||++|+|||++++.+|+.+..|+..+++.. 
T Consensus         4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-   82 (176)
T PTZ00099          4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-   82 (176)
T ss_pred             CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-
Confidence            5778899999977643  333  56899999999999999999999999999999999999999999999999987643 


Q ss_pred             CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhhc
Q 030931           92 MLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA  158 (169)
Q Consensus        92 ~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~  158 (169)
                      ..+.|+++|+||+|+...  ...++....     ....++.|++|||++|+||+++|++++..+.+...
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~-----~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~  146 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQK-----AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDN  146 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHH-----HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence            257899999999999642  232222211     12334568999999999999999999999887543

>PLN03108 Rab family protein; Provisional

Probab=99.95  E-value=3.5e-28  Score=171.18  Aligned_cols=151  Identities=19%  Similarity=0.266  Sum_probs=119.6

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +|++.+|+|||||++++     .+.+.||++.++.  .+..  ..+.+++|||+|++.+..++..+++.+|++++|||++
T Consensus        10 vivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~   89 (210)
T PLN03108         10 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT   89 (210)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECC
Confidence            46789999999999976     4556678776543  2333  4578999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++++|..+..|+..+.... .++.|+++++||+|+...  .+.++.....     +..+++++++||+++.|++++|+++
T Consensus        90 ~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~e~f~~l  163 (210)
T PLN03108         90 RRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFA-----KEHGLIFMEASAKTAQNVEEAFIKT  163 (210)
T ss_pred             cHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999988875432 257999999999999653  2333322211     2334679999999999999999999


Q ss_pred             HHHHHhhh
Q 030931          150 ASTLKEMR  157 (169)
Q Consensus       150 ~~~~~~~~  157 (169)
                      ++.+.+..
T Consensus       164 ~~~~~~~~  171 (210)
T PLN03108        164 AAKIYKKI  171 (210)
T ss_pred             HHHHHHHh
Confidence            99887654

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=5.4e-29  Score=162.24  Aligned_cols=155  Identities=19%  Similarity=0.219  Sum_probs=122.9

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE---CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +++....|||||++.|     .+-.-||+|+++..  ++.   ..+++++|||+||++|+++...|++++-++++|||.+
T Consensus        13 vigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvydit   92 (213)
T KOG0091|consen   13 VIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDIT   92 (213)
T ss_pred             EEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEecc
Confidence            5668889999999976     45557888876532  222   5699999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCC-CCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFML-NSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~-~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      ++++|+-+..|+.+..-....+ ..-..+||.|+|+.....   +..+.+...++..++.++||||++|.|+++.|+.+.
T Consensus        93 nr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq---Vt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mla  169 (213)
T KOG0091|consen   93 NRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ---VTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLA  169 (213)
T ss_pred             chhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcc---ccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHH
Confidence            9999999999999876544323 455678999999975432   222222222356777899999999999999999999


Q ss_pred             HHHHhhhcc
Q 030931          151 STLKEMRAA  159 (169)
Q Consensus       151 ~~~~~~~~~  159 (169)
                      +.+....++
T Consensus       170 qeIf~~i~q  178 (213)
T KOG0091|consen  170 QEIFQAIQQ  178 (213)
T ss_pred             HHHHHHHhc
Confidence            988887554

>cd01863 Rab18 Rab18 subfamily

Probab=99.95  E-value=9e-28  Score=162.31  Aligned_cols=147  Identities=20%  Similarity=0.292  Sum_probs=116.4

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+++|||||++++     ...+.||.+.++.  .+..  ..+.+++||+||++.+...+..+++.+|++++|||++
T Consensus         4 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   83 (161)
T cd01863           4 LLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVT   83 (161)
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECC
Confidence            36789999999999976     3346677775443  2333  4578999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.++++.+..|+..+.+.....+.|+++|+||+|+.... ..++... +.    ...+++++++||++|.|++++++++.
T Consensus        84 ~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~~~~~~~  158 (161)
T cd01863          84 RRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLK-FA----RKHNMLFIETSAKTRDGVQQAFEELV  158 (161)
T ss_pred             CHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHH-HH----HHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            999999999999888766555689999999999996332 2222222 11    23456799999999999999999988


Q ss_pred             HH
Q 030931          151 ST  152 (169)
Q Consensus       151 ~~  152 (169)
                      +.
T Consensus       159 ~~  160 (161)
T cd01863         159 EK  160 (161)
T ss_pred             Hh
Confidence            65

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01862 Rab7 Rab7 subfamily

Probab=99.95  E-value=2.1e-27  Score=162.01  Aligned_cols=153  Identities=14%  Similarity=0.170  Sum_probs=117.8

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+++|||||++++     ...+.+|.+.++.  .+..  ..+.+++||+||++.+..++..++++++++|+|||++
T Consensus         4 ~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   83 (172)
T cd01862           4 IILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVT   83 (172)
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECC
Confidence            36789999999999976     3444567665443  3334  4577889999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCC---CCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPF---MLNSVILVFANKQDMKG--AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~---~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      +++++.....|...++....   ..+.|+++|+||+|+..  ....++......    .....+++++||++|.|++++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~  159 (172)
T cd01862          84 NPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQ----SNGNIPYFETSAKEAINVEQAF  159 (172)
T ss_pred             CHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHH----HcCCceEEEEECCCCCCHHHHH
Confidence            99999988888877655332   33799999999999973  223344333221    1112579999999999999999


Q ss_pred             HHHHHHHHhhh
Q 030931          147 DWLASTLKEMR  157 (169)
Q Consensus       147 ~~l~~~~~~~~  157 (169)
                      +++.+.+.+..
T Consensus       160 ~~i~~~~~~~~  170 (172)
T cd01862         160 ETIARKALEQE  170 (172)
T ss_pred             HHHHHHHHhcc
Confidence            99999887753

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04142 RRP22 RRP22 subfamily

Probab=99.95  E-value=1.3e-27  Score=166.65  Aligned_cols=152  Identities=13%  Similarity=-0.001  Sum_probs=113.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchh--------hHHhhccCCCEE
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRP--------LWRHYFNNTDGL   64 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~--------~~~~~~~~~~~i   64 (169)
                      +++.+++|||||+++|     ...+.||.+.++  ..+..+  .+.+++|||||.+.+..        .....++.+|++
T Consensus         5 ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~i   84 (198)
T cd04142           5 VLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAF   84 (198)
T ss_pred             EECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEE
Confidence            6789999999999976     456778887543  233343  47889999999765421        133457899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCC
Q 030931           65 IYVVDSLDRERIGKAKQEFQAIIKDP--FMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGD  140 (169)
Q Consensus        65 i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  140 (169)
                      |+|||++++++|+.+..|++.+++..  ...++|+++|+||+|+.+..  ..++......    +..+++|++|||++|.
T Consensus        85 ilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~  160 (198)
T cd04142          85 ILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR----KSWKCGYLECSAKYNW  160 (198)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH----HhcCCcEEEecCCCCC
Confidence            99999999999999999998887643  23579999999999995432  2222211111    1235679999999999


Q ss_pred             CHHHHHHHHHHHHHhhh
Q 030931          141 GLYEGLDWLASTLKEMR  157 (169)
Q Consensus       141 gi~~~~~~l~~~~~~~~  157 (169)
                      |++++|+.++..+..+.
T Consensus       161 ~v~~lf~~i~~~~~~~~  177 (198)
T cd04142         161 HILLLFKELLISATTRG  177 (198)
T ss_pred             CHHHHHHHHHHHhhccC
Confidence            99999999998777654

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.95  E-value=1.8e-28  Score=167.85  Aligned_cols=149  Identities=15%  Similarity=0.126  Sum_probs=108.5

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+|+|||||+++|     ...+.||....+ ..+..  ..+++++|||||++++..++..+++++|++|+|||+++
T Consensus         4 ~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~   83 (173)
T cd04130           4 VLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVN   83 (173)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCC
Confidence            36789999999999865     556677764222 22333  45789999999999999999999999999999999999


Q ss_pred             hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCCCCCCce-eEEEEeeeccCCC
Q 030931           73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVCEGLGLFDLKNRK-WHIQGTCALKGDG  141 (169)
Q Consensus        73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  141 (169)
                      +++|+.+. .|+..+...  .++.|+++++||+|+.....         ...+............+ .+++++||++|.|
T Consensus        84 ~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~  161 (173)
T cd04130          84 PSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKN  161 (173)
T ss_pred             HHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            99999885 587777542  24799999999999864211         00000000000111223 3799999999999


Q ss_pred             HHHHHHHHHH
Q 030931          142 LYEGLDWLAS  151 (169)
Q Consensus       142 i~~~~~~l~~  151 (169)
                      ++++|+.++.
T Consensus       162 v~~lf~~~~~  171 (173)
T cd04130         162 LKEVFDTAIL  171 (173)
T ss_pred             HHHHHHHHHh
Confidence            9999998864

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.95  E-value=2.4e-27  Score=160.50  Aligned_cols=147  Identities=23%  Similarity=0.278  Sum_probs=116.3

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+++|||||++++     .+.+.||.+..+  ..+..  ..+++.+||+||++++...+..++++++++++|+|++
T Consensus         5 ~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   84 (163)
T cd01860           5 VLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDIT   84 (163)
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECc
Confidence            36778999999999976     334667777433  33444  4688999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      +.+++.....|+..+..... ++.|+++++||+|+....  +..+.....     ...+++++++||++|.|+.++|+++
T Consensus        85 ~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd01860          85 SEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYA-----DENGLLFFETSAKTGENVNELFTEI  158 (163)
T ss_pred             CHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999998866443 679999999999986422  233322221     1223679999999999999999999


Q ss_pred             HHHH
Q 030931          150 ASTL  153 (169)
Q Consensus       150 ~~~~  153 (169)
                      ++.+
T Consensus       159 ~~~l  162 (163)
T cd01860         159 AKKL  162 (163)
T ss_pred             HHHh
Confidence            9875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.95  E-value=3.4e-28  Score=165.15  Aligned_cols=148  Identities=16%  Similarity=0.112  Sum_probs=110.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE-EE--EEECCEEEEEEEcCCCCC-chhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EK--VQYKNVIFTVWDVGGQEK-LRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~--~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||++++     .+.+.||.+..+ ..  ++...+.+++||+||+++ +......+++.+|++|+|||+++
T Consensus         4 vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~   83 (165)
T cd04146           4 VLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITD   83 (165)
T ss_pred             EECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCC
Confidence            6778999999999976     455667665322 22  333567899999999986 34567788999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCC-CCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccC-CCHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPF-MLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKG-DGLYEGLDW  148 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~gi~~~~~~  148 (169)
                      +++|+.+..|+..+..... ..+.|+++|+||+|+....  +.++... +.    ...+.+|+++||++| .|++++|.+
T Consensus        84 ~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~e~Sa~~~~~~v~~~f~~  158 (165)
T cd04146          84 RSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEK-LA----SELGCLFFEVSAAEDYDGVHSVFHE  158 (165)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHH-HH----HHcCCEEEEeCCCCCchhHHHHHHH
Confidence            9999999988877755332 3579999999999985432  2222111 11    223357999999999 599999999


Q ss_pred             HHHHHH
Q 030931          149 LASTLK  154 (169)
Q Consensus       149 l~~~~~  154 (169)
                      +++.+.
T Consensus       159 l~~~~~  164 (165)
T cd04146         159 LCREVR  164 (165)
T ss_pred             HHHHHh
Confidence            998664

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.95  E-value=4.2e-27  Score=159.25  Aligned_cols=150  Identities=15%  Similarity=0.150  Sum_probs=117.2

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE---EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK---VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++.+.+|+|||||++++     ...+.||.+..+..   ++.+.+.+.+||+||++.+..++..+++.++++++|+|+++
T Consensus         4 ~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   83 (164)
T cd04139           4 IVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITD   83 (164)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCC
Confidence            36789999999999976     34556666543322   23356889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+|.....|+..+.+.....+.|+++|+||+|+.+.  ....+.....     ...+.+++++||++|+|++++|+++.
T Consensus        84 ~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (164)
T cd04139          84 MESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLA-----RQWGVPYVETSAKTRQNVEKAFYDLV  158 (164)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHH-----HHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999988877544468999999999999652  2222211111     12335799999999999999999999


Q ss_pred             HHHHh
Q 030931          151 STLKE  155 (169)
Q Consensus       151 ~~~~~  155 (169)
                      +.+.+
T Consensus       159 ~~~~~  163 (164)
T cd04139         159 REIRQ  163 (164)
T ss_pred             HHHHh
Confidence            87653

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04148 RGK RGK subfamily

Probab=99.95  E-value=1.7e-27  Score=168.79  Aligned_cols=150  Identities=15%  Similarity=0.054  Sum_probs=112.9

Q ss_pred             CccccCCCCCceeeeece------eeeeeeee--EEEEEEEE--CCEEEEEEEcCCCCCchhhHHhhcc-CCCEEEEEEE
Q 030931            1 MLRVKQPYCTSCTLVKFY------LLFLLLVR--FNVEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFN-NTDGLIYVVD   69 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~------~~~~~t~~--~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~-~~~~ii~v~d   69 (169)
                      ++++.+|+|||||+++|.      ..+.||.+  .....+..  ..+.+.+|||+|++  ......+++ ++|++++|||
T Consensus         4 ~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d   81 (221)
T cd04148           4 VMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYS   81 (221)
T ss_pred             EEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEE
Confidence            367899999999999882      45556664  33333443  67889999999998  333455667 9999999999


Q ss_pred             CCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931           70 SLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                      ++++.+|+.+.+|+..+.+.....+.|+++|+||+|+....  ..++. ..+    ....+++++++||++|.|++++|+
T Consensus        82 ~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~----a~~~~~~~~e~SA~~~~gv~~l~~  156 (221)
T cd04148          82 VTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG-RAC----AVVFDCKFIETSAGLQHNVDELLE  156 (221)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH-HHH----HHHcCCeEEEecCCCCCCHHHHHH
Confidence            99999999999999888665444689999999999986432  11211 111    122345799999999999999999


Q ss_pred             HHHHHHHhhh
Q 030931          148 WLASTLKEMR  157 (169)
Q Consensus       148 ~l~~~~~~~~  157 (169)
                      +++..+....
T Consensus       157 ~l~~~~~~~~  166 (221)
T cd04148         157 GIVRQIRLRR  166 (221)
T ss_pred             HHHHHHHhhh
Confidence            9999887544

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.95  E-value=6.8e-27  Score=162.07  Aligned_cols=151  Identities=19%  Similarity=0.170  Sum_probs=125.9

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE---EEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||+|..+|     .+.|.||++..+.   .++.+...+.|+||+|++.+..+...++++++++++||+++++
T Consensus         8 vlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~   87 (196)
T KOG0395|consen    8 VLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDR   87 (196)
T ss_pred             EECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCH
Confidence            5789999999999976     7889999985432   3455788999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      .+|+.+..++..+++.......|+++||||+|+...  ++.++-. .+    ....+++|+|+||+.+.+++++|..+++
T Consensus        88 ~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~-~l----a~~~~~~f~E~Sak~~~~v~~~F~~L~r  162 (196)
T KOG0395|consen   88 SSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGK-AL----ARSWGCAFIETSAKLNYNVDEVFYELVR  162 (196)
T ss_pred             HHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHH-HH----HHhcCCcEEEeeccCCcCHHHHHHHHHH
Confidence            999999999999977666667999999999999763  2323211 11    2445567999999999999999999999


Q ss_pred             HHHhhh
Q 030931          152 TLKEMR  157 (169)
Q Consensus       152 ~~~~~~  157 (169)
                      .+....
T Consensus       163 ~~~~~~  168 (196)
T KOG0395|consen  163 EIRLPR  168 (196)
T ss_pred             HHHhhh
Confidence            888743

>cd04135 Tc10 TC10 subfamily

Probab=99.95  E-value=1.1e-27  Score=163.89  Aligned_cols=151  Identities=16%  Similarity=0.148  Sum_probs=110.5

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+|+|||||+++|     .+.+.||.+..+ ..+..  ..+.+++|||+|++.+..++..+++.++++++|||+++
T Consensus         4 ~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~   83 (174)
T cd04135           4 VVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN   83 (174)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCC
Confidence            46789999999999976     445667766332 23333  35678899999999999999999999999999999999


Q ss_pred             hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH---------HHhhhCCCCCCCce-eEEEEeeeccCCC
Q 030931           73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME---------VCEGLGLFDLKNRK-WHIQGTCALKGDG  141 (169)
Q Consensus        73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  141 (169)
                      +.+|+.+. .|+..+...  .++.|+++++||+|+.+.....+         +....+.......+ .++++|||++|.|
T Consensus        84 ~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g  161 (174)
T cd04135          84 PASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKG  161 (174)
T ss_pred             HHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCC
Confidence            99999886 566666433  46899999999999854321111         00000000111222 3699999999999


Q ss_pred             HHHHHHHHHHHH
Q 030931          142 LYEGLDWLASTL  153 (169)
Q Consensus       142 i~~~~~~l~~~~  153 (169)
                      ++++|+.++..+
T Consensus       162 i~~~f~~~~~~~  173 (174)
T cd04135         162 LKTVFDEAILAI  173 (174)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998865

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.95  E-value=5.6e-27  Score=163.73  Aligned_cols=151  Identities=13%  Similarity=0.101  Sum_probs=115.8

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeee-EEEEEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVR-FNVEKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~-~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+|+|||||+++|     .+.+.+|.+ .....+..++  +++++||++|++.+..++..+++.+|++++|||+++
T Consensus         3 ~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~   82 (198)
T cd04147           3 VFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDD   82 (198)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCC
Confidence            36789999999999987     334455554 3333445544  789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-C--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-M--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      +.+++.+..|+..+.+.....+.|+++|+||+|+... .  ...+..+...    ...+.+++++||++|.|++++|+++
T Consensus        83 ~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~g~gv~~l~~~l  158 (198)
T cd04147          83 PESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE----LDWNCGFVETSAKDNENVLEVFKEL  158 (198)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH----hhcCCcEEEecCCCCCCHHHHHHHH
Confidence            9999999999888877544457999999999998542 1  1222211111    1123468999999999999999999


Q ss_pred             HHHHHh
Q 030931          150 ASTLKE  155 (169)
Q Consensus       150 ~~~~~~  155 (169)
                      .+.+..
T Consensus       159 ~~~~~~  164 (198)
T cd04147         159 LRQANL  164 (198)
T ss_pred             HHHhhc
Confidence            987763

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.94  E-value=6.6e-27  Score=160.15  Aligned_cols=151  Identities=16%  Similarity=0.199  Sum_probs=110.9

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+|+|||||+++|     .+.+.||.+..+ ..+..  ..+.+.+|||+|++.+...+..+++++|++++|||+++
T Consensus         5 ~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~   84 (175)
T cd01870           5 VIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS   84 (175)
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCC
Confidence            36789999999999976     456777777543 23444  45788999999999999888889999999999999999


Q ss_pred             hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhC--------CCCCCC-ceeEEEEeeeccCCC
Q 030931           73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLG--------LFDLKN-RKWHIQGTCALKGDG  141 (169)
Q Consensus        73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~--------~~~~~~-~~~~~~~~Sa~~~~g  141 (169)
                      +++|+.+. .|...+.+.  ..+.|+++|+||+|+...... .++.....        ...... ..+++++|||++|.|
T Consensus        85 ~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~  162 (175)
T cd01870          85 PDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEG  162 (175)
T ss_pred             HHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcC
Confidence            99998886 477766542  247899999999998643211 11110000        000011 124799999999999


Q ss_pred             HHHHHHHHHHHH
Q 030931          142 LYEGLDWLASTL  153 (169)
Q Consensus       142 i~~~~~~l~~~~  153 (169)
                      ++++|+++++.+
T Consensus       163 v~~lf~~l~~~~  174 (175)
T cd01870         163 VREVFEMATRAA  174 (175)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04123 Rab21 Rab21 subfamily

Probab=99.94  E-value=6e-27  Score=158.10  Aligned_cols=146  Identities=22%  Similarity=0.245  Sum_probs=112.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEE--EEEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFN--VEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~--~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||+++|     .+.+.+|.+..  ...+..  ..+.+.+||++|++.+..+++.+++.++++++|||+++
T Consensus         5 i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   84 (162)
T cd04123           5 LLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITD   84 (162)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCC
Confidence            5789999999999976     23444454432  233333  45679999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      .++++....|+.++..... .+.|+++++||+|+....  ...+.....     ...+.+++++||+++.|++++++++.
T Consensus        85 ~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gi~~~~~~l~  158 (162)
T cd04123          85 ADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYA-----KSVGAKHFETSAKTGKGIEELFLSLA  158 (162)
T ss_pred             HHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999888765432 379999999999987432  222222221     22345689999999999999999998


Q ss_pred             HHH
Q 030931          151 STL  153 (169)
Q Consensus       151 ~~~  153 (169)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04123         159 KRM  161 (162)
T ss_pred             HHh
Confidence            765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.94  E-value=2.9e-26  Score=162.03  Aligned_cols=149  Identities=18%  Similarity=0.224  Sum_probs=121.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      |++..|+|||||++++     .+.+.||++.++....+    +.+.+++|||+|++.+..++..++++++++++|||+++
T Consensus        14 liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~   93 (215)
T PTZ00132         14 LVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTS   93 (215)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcC
Confidence            6789999999999865     56788999987765433    67999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      ..+|..+..|+..+.+..  .+.|+++++||+|+.+.....+....     ....++.++++||++|.|+++.|.++++.
T Consensus        94 ~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~  166 (215)
T PTZ00132         94 RITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITF-----HRKKNLQYYDISAKSNYNFEKPFLWLARR  166 (215)
T ss_pred             HHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHH-----HHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999999998886533  57899999999998643221221111     12344679999999999999999999998


Q ss_pred             HHhhh
Q 030931          153 LKEMR  157 (169)
Q Consensus       153 ~~~~~  157 (169)
                      +....
T Consensus       167 l~~~p  171 (215)
T PTZ00132        167 LTNDP  171 (215)
T ss_pred             Hhhcc
Confidence            87654

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.94  E-value=4.3e-26  Score=156.85  Aligned_cols=154  Identities=17%  Similarity=0.200  Sum_probs=119.6

Q ss_pred             CccccCCCCCceeeeece-----eeeeeeeeEE-EEEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKFY-----LLFLLLVRFN-VEKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~-----~~~~~t~~~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +|.+.+|+|||||++++.     ..+.||.+.. ...+..+  .+.+++||+||++++...+..++..++++++|||.++
T Consensus         5 ~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   84 (180)
T cd04137           5 AVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTS   84 (180)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCC
Confidence            367899999999999873     4455666533 3334443  4678999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      ..+++.+..|+..+++.....+.|+++++||+|+....  ...+... +.    +..+++++++||+++.|+.++|.++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (180)
T cd04137          85 RKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKE-LA----ESWGAAFLESSARENENVEEAFELLI  159 (180)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHH-HH----HHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999888875545678999999999986422  2222111 11    12235799999999999999999999


Q ss_pred             HHHHhhhcc
Q 030931          151 STLKEMRAA  159 (169)
Q Consensus       151 ~~~~~~~~~  159 (169)
                      +.+......
T Consensus       160 ~~~~~~~~~  168 (180)
T cd04137         160 EEIEKVENP  168 (180)
T ss_pred             HHHHHhcCC
Confidence            988876543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04114 Rab30 Rab30 subfamily

Probab=99.94  E-value=1.9e-26  Score=156.96  Aligned_cols=147  Identities=18%  Similarity=0.230  Sum_probs=112.4

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||++++     .+.+.+|++..+  ..+...  .+.+.+||++|++.+...+..+++.++++++|||+++
T Consensus        12 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~   91 (169)
T cd04114          12 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITC   91 (169)
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcC
Confidence            5779999999999987     345566666433  334444  4778999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      .++++.+..|+..+.... ..+.|+++++||+|+.+.... .+....+.    .....+++++||++|.|+.++|+++.+
T Consensus        92 ~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~~l~~~i~~  166 (169)
T cd04114          92 EESFRCLPEWLREIEQYA-NNKVITILVGNKIDLAERREVSQQRAEEFS----DAQDMYYLETSAKESDNVEKLFLDLAC  166 (169)
T ss_pred             HHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH----HHcCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            999999989987764422 246999999999998643221 12222221    112256999999999999999999987


Q ss_pred             HH
Q 030931          152 TL  153 (169)
Q Consensus       152 ~~  153 (169)
                      .+
T Consensus       167 ~~  168 (169)
T cd04114         167 RL  168 (169)
T ss_pred             Hh
Confidence            64

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.3e-27  Score=154.30  Aligned_cols=156  Identities=31%  Similarity=0.552  Sum_probs=139.3

Q ss_pred             CccccCCCCCceeeeec------------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEE
Q 030931            1 MLRVKQPYCTSCTLVKF------------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   68 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f------------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~   68 (169)
                      ||++=+.+|||+++.+.            ...-.||+|.+..++...+..+.+||.+||+..+++|..||..||++|+++
T Consensus        21 lIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~vi  100 (197)
T KOG0076|consen   21 LILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVI  100 (197)
T ss_pred             eeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEee
Confidence            56778899999999953            356689999999999999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-CCCCCceeEEEEeeeccCCCHHHHHH
Q 030931           69 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL-FDLKNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus        69 d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                      |++++++|+.....++++.......+.|+++.+||.|+.+.....++...++. .....+..++.++||.+|+||++...
T Consensus       101 Da~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~  180 (197)
T KOG0076|consen  101 DATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIE  180 (197)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHH
Confidence            99999999999999999988888889999999999999988888888777763 22245667899999999999999999


Q ss_pred             HHHHHHHhh
Q 030931          148 WLASTLKEM  156 (169)
Q Consensus       148 ~l~~~~~~~  156 (169)
                      |+...+.+.
T Consensus       181 w~v~~~~kn  189 (197)
T KOG0076|consen  181 WLVKKLEKN  189 (197)
T ss_pred             HHHHHHhhc
Confidence            999988877

>cd00154 Rab Rab family

Probab=99.94  E-value=5.3e-26  Score=152.57  Aligned_cols=144  Identities=21%  Similarity=0.285  Sum_probs=115.0

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEEE--EE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKV--QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+++|||||++++     .+.+.+|.+.+....  ..  ..+.+.+||+||++.+...+..+++++|++++|+|++
T Consensus         4 ~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~   83 (159)
T cd00154           4 VLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDIT   83 (159)
T ss_pred             EEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECC
Confidence            36789999999999976     444567777665543  33  4588999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC--CCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK--GAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      +++++..+..|+..+.... ..+.|+++++||+|+.  .....+++.+...     ..+.+++++||+++.|++++|+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~~i  157 (159)
T cd00154          84 NRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAK-----ENGLLFFETSAKTGENVEELFQSL  157 (159)
T ss_pred             CHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHH-----HcCCeEEEEecCCCCCHHHHHHHH
Confidence            9999999999998886643 2579999999999995  3334444433222     245679999999999999999998


Q ss_pred             H
Q 030931          150 A  150 (169)
Q Consensus       150 ~  150 (169)
                      .
T Consensus       158 ~  158 (159)
T cd00154         158 A  158 (159)
T ss_pred             h
Confidence            6

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01893 Miro1 Miro1 subfamily

Probab=99.94  E-value=2e-26  Score=156.73  Aligned_cols=152  Identities=11%  Similarity=0.017  Sum_probs=107.4

Q ss_pred             CccccCCCCCceeeeece-----eeeeeeeeEEEEE--EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            1 MLRVKQPYCTSCTLVKFY-----LLFLLLVRFNVEK--VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~-----~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      ++++.+|+|||||+++|.     +.+.++.+.....  +....+.+++|||||++.+...+..+++.++++++|||++++
T Consensus         4 ~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~   83 (166)
T cd01893           4 VLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRP   83 (166)
T ss_pred             EEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCH
Confidence            367899999999999872     2222222211121  233678999999999998888888889999999999999999


Q ss_pred             hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCC-Cce-eEEEEeeeccCCCHHHHHHHHH
Q 030931           74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLK-NRK-WHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      .+++.+. .|+..+....  .+.|+++|+||+|+.+............. ... ... .++++|||++|.|++++|+.+.
T Consensus        84 ~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~  160 (166)
T cd01893          84 STLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLP-IMNEFREIETCVECSAKTLINVSEVFYYAQ  160 (166)
T ss_pred             HHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHH-HHHHHhcccEEEEeccccccCHHHHHHHHH
Confidence            9999986 5666664432  47999999999999764332111111000 000 011 2699999999999999999998


Q ss_pred             HHHHh
Q 030931          151 STLKE  155 (169)
Q Consensus       151 ~~~~~  155 (169)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T cd01893         161 KAVLH  165 (166)
T ss_pred             HHhcC
Confidence            87653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00157 Rho Rho (Ras homology) family

Probab=99.93  E-value=4.1e-26  Score=155.48  Aligned_cols=149  Identities=19%  Similarity=0.190  Sum_probs=108.3

Q ss_pred             CccccCCCCCceeeeece-----eeeeeeeeEEEE---EEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKFY-----LLFLLLVRFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~-----~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+|+|||||+++|.     ..+.||......   ......+.+++||+||++.+...+..+++.+|++++|||+++
T Consensus         4 ~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   83 (171)
T cd00157           4 VVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDS   83 (171)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCC
Confidence            467899999999999874     344566653322   223357889999999999988888888999999999999999


Q ss_pred             hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--------HHhhhCCCCCCCcee-EEEEeeeccCCCH
Q 030931           73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME--------VCEGLGLFDLKNRKW-HIQGTCALKGDGL  142 (169)
Q Consensus        73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi  142 (169)
                      +.+|.... .|+..+....  .+.|+++|+||+|+........        +............+. +++++||++|.|+
T Consensus        84 ~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (171)
T cd00157          84 PSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGV  161 (171)
T ss_pred             HHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCH
Confidence            99988765 4666664432  4799999999999875432210        001111111122233 7999999999999


Q ss_pred             HHHHHHHHH
Q 030931          143 YEGLDWLAS  151 (169)
Q Consensus       143 ~~~~~~l~~  151 (169)
                      +++|+++++
T Consensus       162 ~~l~~~i~~  170 (171)
T cd00157         162 KEVFEEAIR  170 (171)
T ss_pred             HHHHHHHhh
Confidence            999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04129 Rho2 Rho2 subfamily

Probab=99.93  E-value=3.7e-26  Score=158.25  Aligned_cols=156  Identities=15%  Similarity=0.144  Sum_probs=112.3

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++..|+|||||++++     .+.+.||....+. .+..  ..+.+.+||++|++.+...++.+++.++++++|||+++
T Consensus         5 ~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~   84 (187)
T cd04129           5 VIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDT   84 (187)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCC
Confidence            36789999999999986     3455566554432 2333  34678999999999888777788899999999999999


Q ss_pred             hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-H------HHhhhCCCCCCCce-eEEEEeeeccCCCHH
Q 030931           73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-E------VCEGLGLFDLKNRK-WHIQGTCALKGDGLY  143 (169)
Q Consensus        73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~------~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~  143 (169)
                      .++|+.+. .|+..+....  ++.|+++|+||+|+.+..... +      +.........+..+ .+|++|||++|.|++
T Consensus        85 ~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  162 (187)
T cd04129          85 PDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVD  162 (187)
T ss_pred             HHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHH
Confidence            99999987 5888775433  479999999999985321100 0      00000000011222 369999999999999


Q ss_pred             HHHHHHHHHHHhhhc
Q 030931          144 EGLDWLASTLKEMRA  158 (169)
Q Consensus       144 ~~~~~l~~~~~~~~~  158 (169)
                      ++|+++.+.+...+.
T Consensus       163 ~~f~~l~~~~~~~~~  177 (187)
T cd04129         163 DVFEAATRAALLVRK  177 (187)
T ss_pred             HHHHHHHHHHhcccC
Confidence            999999987776553

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd00876 Ras Ras family

Probab=99.93  E-value=5.4e-26  Score=153.13  Aligned_cols=147  Identities=18%  Similarity=0.149  Sum_probs=113.8

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEE-EEEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFN-VEKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      ++++.+|+|||||++++     ...+.||.+.. ...+..+  .+.+++||+||++.+..++..+++.++++++|||+++
T Consensus         3 ~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   82 (160)
T cd00876           3 VVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITD   82 (160)
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCC
Confidence            36789999999999976     34555565522 2233443  5889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      ++++.....|+..+.........|+++++||+|+....  ..++.....     ...+.+++++||+++.|++++|+++.
T Consensus        83 ~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~l~~~l~  157 (160)
T cd00876          83 RESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALA-----KEWGCPFIETSAKDNINIDEVFKLLV  157 (160)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999998888765443589999999999987522  222222211     22235799999999999999999998


Q ss_pred             HH
Q 030931          151 ST  152 (169)
Q Consensus       151 ~~  152 (169)
                      +.
T Consensus       158 ~~  159 (160)
T cd00876         158 RE  159 (160)
T ss_pred             hh
Confidence            75

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.93  E-value=6e-26  Score=144.71  Aligned_cols=152  Identities=35%  Similarity=0.610  Sum_probs=138.0

Q ss_pred             ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931            2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI   76 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~   76 (169)
                      +++=+..||||++.++    .....||.|+++..+.+ +.+++++||.+|+...+..|..||.+.|++|+|+|.+|...|
T Consensus        22 llGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krf  101 (185)
T KOG0074|consen   22 LLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRF  101 (185)
T ss_pred             EEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhH
Confidence            3456789999999988    45678999999999999 459999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931           77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                      +++.+.+-++++...+...|+.+.+||.|+..+...+++...+++..+..+.|++-+|||.+++|+.+..+|++...
T Consensus       102 eE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~sn~  178 (185)
T KOG0074|consen  102 EEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQSNP  178 (185)
T ss_pred             HHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhhcCC
Confidence            99999999999988888999999999999988888888888888877788889999999999999999999987643

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.93  E-value=2.7e-25  Score=151.52  Aligned_cols=148  Identities=20%  Similarity=0.241  Sum_probs=120.7

Q ss_pred             ccccCCCCCceeeee-----ceeeeeeeeeEEEE---EEE-ECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVK-----FYLLFLLLVRFNVE---KVQ-YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~-----f~~~~~~t~~~~~~---~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      |.+.+++|||+|+..     |.+.|.||+-.++.   .++ ...+.+.+|||+||+.|..+++.-+.++|.++++|++.+
T Consensus         9 vVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~   88 (198)
T KOG0393|consen    9 VVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVS   88 (198)
T ss_pred             EECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCC
Confidence            556889999999995     57888999885543   243 567889999999999999999999999999999999999


Q ss_pred             hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-----------------HhHHHhhhCCCCCCCceeEEEEe
Q 030931           73 RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMT-----------------PMEVCEGLGLFDLKNRKWHIQGT  134 (169)
Q Consensus        73 ~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~  134 (169)
                      +++|+++. +|+.++.+..  ++.|+++||+|.||.+...                 ..++.+.++       -..|+||
T Consensus        89 p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~ig-------a~~y~Ec  159 (198)
T KOG0393|consen   89 PESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIG-------AVKYLEC  159 (198)
T ss_pred             hhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhC-------cceeeee
Confidence            99999975 7999997765  7999999999999974221                 122222222       1469999


Q ss_pred             eeccCCCHHHHHHHHHHHHHhhhc
Q 030931          135 CALKGDGLYEGLDWLASTLKEMRA  158 (169)
Q Consensus       135 Sa~~~~gi~~~~~~l~~~~~~~~~  158 (169)
                      ||++..|+.++|+..+.......+
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhcccc
Confidence            999999999999999998887654

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.93  E-value=2.1e-25  Score=155.63  Aligned_cols=140  Identities=17%  Similarity=0.144  Sum_probs=103.9

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE-------CCEEEEEEEcCCCCCchhhHHhhccCCCEEEE
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY-------KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   66 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~-------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~   66 (169)
                      +|++..|+|||||+++|     .+.+.||+|.++  ..+.+       ..+.+++|||+|++++..++..++++++++|+
T Consensus         4 vlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIl   83 (202)
T cd04102           4 LVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIIL   83 (202)
T ss_pred             EEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEE
Confidence            36789999999999976     566788998544  23333       35789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcCC------------------CCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCC
Q 030931           67 VVDSLDRERIGKAKQEFQAIIKDP------------------FMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKN  126 (169)
Q Consensus        67 v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~  126 (169)
                      |||++++.+|+.+..|+.++....                  ...+.|+++||||.|+.+..  +....... ....+++
T Consensus        84 VyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~-~~~ia~~  162 (202)
T cd04102          84 VHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTA-RGFVAEQ  162 (202)
T ss_pred             EEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhH-hhhHHHh
Confidence            999999999999999999986531                  12468999999999996532  22211111 1111234


Q ss_pred             ceeEEEEeeeccCCC
Q 030931          127 RKWHIQGTCALKGDG  141 (169)
Q Consensus       127 ~~~~~~~~Sa~~~~g  141 (169)
                      .+.+.++.++.+...
T Consensus       163 ~~~~~i~~~c~~~~~  177 (202)
T cd04102         163 GNAEEINLNCTNGRL  177 (202)
T ss_pred             cCCceEEEecCCccc
Confidence            455677777775544

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.92  E-value=8.2e-25  Score=148.79  Aligned_cols=146  Identities=15%  Similarity=0.069  Sum_probs=101.0

Q ss_pred             CccccCCCCCceeeeeceeee-------eeeeeEEEEEEEECCEEEEEEEcCCCCCch---------hhHHhhccCCCEE
Q 030931            1 MLRVKQPYCTSCTLVKFYLLF-------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLR---------PLWRHYFNNTDGL   64 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~~~~i   64 (169)
                      ++++.+++|||||++++....       .+|.+.....+..+++++++|||||+....         .........+|++
T Consensus         4 ~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~   83 (168)
T cd01897           4 VIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAV   83 (168)
T ss_pred             EEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcE
Confidence            367899999999999884322       335555555666678999999999984211         0011112336899


Q ss_pred             EEEEECCChhhH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931           65 IYVVDSLDRERI--GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  142 (169)
Q Consensus        65 i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  142 (169)
                      ++|+|+++..++  +....|+..+....  .+.|+++|+||+|+.+.....+. ..+    .....++++++||++|.|+
T Consensus        84 l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~-~~~----~~~~~~~~~~~Sa~~~~gi  156 (168)
T cd01897          84 LFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEI-EEE----EELEGEEVLKISTLTEEGV  156 (168)
T ss_pred             EEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHH-HHh----hhhccCceEEEEecccCCH
Confidence            999999887654  55556777664322  47999999999999654332221 111    1234567999999999999


Q ss_pred             HHHHHHHHHHH
Q 030931          143 YEGLDWLASTL  153 (169)
Q Consensus       143 ~~~~~~l~~~~  153 (169)
                      +++|+++.+.+
T Consensus       157 ~~l~~~l~~~~  167 (168)
T cd01897         157 DEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHh
Confidence            99999998865

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04171 SelB SelB subfamily

Probab=99.91  E-value=1.9e-24  Score=146.18  Aligned_cols=141  Identities=15%  Similarity=0.007  Sum_probs=98.6

Q ss_pred             ccccCCCCCceeeeecee----------eeeeeeeEEEEEEEEC-CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931            2 LRVKQPYCTSCTLVKFYL----------LFLLLVRFNVEKVQYK-NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   70 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~----------~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~   70 (169)
                      +++.+++|||||++++..          ...+|++..+..+... +..+++|||||++++......+++++|++++|+|+
T Consensus         5 i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~   84 (164)
T cd04171           5 TAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAA   84 (164)
T ss_pred             EEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEEC
Confidence            567999999999998842          1234566666666665 78999999999998877777788999999999999


Q ss_pred             CC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCCCCCceeEEEEeeeccCCCHH
Q 030931           71 LD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  143 (169)
Q Consensus        71 ~~---~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  143 (169)
                      ++   .++.+.+.    .+ +..  ...|+++++||+|+.+...    ..++.+.+...  ...+++++++||++++|++
T Consensus        85 ~~~~~~~~~~~~~----~~-~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~v~  155 (164)
T cd04171          85 DEGIMPQTREHLE----IL-ELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--FLADAPIFPVSAVTGEGIE  155 (164)
T ss_pred             CCCccHhHHHHHH----HH-HHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--CcCCCcEEEEeCCCCcCHH
Confidence            76   33332221    11 111  1249999999999965321    12223333211  1134679999999999999


Q ss_pred             HHHHHHHH
Q 030931          144 EGLDWLAS  151 (169)
Q Consensus       144 ~~~~~l~~  151 (169)
                      ++++.+.+
T Consensus       156 ~l~~~l~~  163 (164)
T cd04171         156 ELKEYLDE  163 (164)
T ss_pred             HHHHHHhh
Confidence            99998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01890 LepA LepA subfamily

Probab=99.91  E-value=3.1e-24  Score=147.42  Aligned_cols=142  Identities=15%  Similarity=0.126  Sum_probs=102.8

Q ss_pred             ccccCCCCCceeeeecee------------eeeeee------eEEE----EEE-----EECCEEEEEEEcCCCCCchhhH
Q 030931            2 LRVKQPYCTSCTLVKFYL------------LFLLLV------RFNV----EKV-----QYKNVIFTVWDVGGQEKLRPLW   54 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~------------~~~~t~------~~~~----~~~-----~~~~~~~~i~D~~G~~~~~~~~   54 (169)
                      +++..++|||||+++|..            .+.+|.      |..+    ..+     +...+.+++|||||++.+..++
T Consensus         5 ~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   84 (179)
T cd01890           5 IIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEV   84 (179)
T ss_pred             EEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHH
Confidence            678999999999998733            233322      2221    122     2357889999999999999999


Q ss_pred             HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCCCCCceeEE
Q 030931           55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNRKWHI  131 (169)
Q Consensus        55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~  131 (169)
                      ..+++.+|++|+|+|+++..++.....|.... .    .++|+++|+||+|+.+....   .++.+.++..     ...+
T Consensus        85 ~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~  154 (179)
T cd01890          85 SRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSADPERVKQQIEDVLGLD-----PSEA  154 (179)
T ss_pred             HHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC-----cccE
Confidence            99999999999999998876666655554322 1    36899999999998643211   2333333221     1248


Q ss_pred             EEeeeccCCCHHHHHHHHHHHH
Q 030931          132 QGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus       132 ~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                      +++||++|.|++++|+++...+
T Consensus       155 ~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         155 ILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EEeeccCCCCHHHHHHHHHhhC
Confidence            9999999999999999998865

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01898 Obg Obg subfamily

Probab=99.91  E-value=2.3e-24  Score=146.81  Aligned_cols=148  Identities=21%  Similarity=0.099  Sum_probs=103.7

Q ss_pred             ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEECCE-EEEEEEcCCCCC----chhhHHhh---ccCCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYKNV-IFTVWDVGGQEK----LRPLWRHY---FNNTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~----~~~~~~~~---~~~~~~ii~   66 (169)
                      +++.+++|||||++++...       ..+|.......+..++. ++.+|||||+..    ...+...+   ++.+|++++
T Consensus         5 ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~   84 (170)
T cd01898           5 LVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLH   84 (170)
T ss_pred             EECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEE
Confidence            6789999999999988432       23344444445555555 999999999642    22233333   446999999


Q ss_pred             EEECCCh-hhHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           67 VVDSLDR-ERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        67 v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      |+|+++. .+++....|.+.+.... ...+.|+++|+||+|+.+.....+....+..   .....+++++||+++.|+.+
T Consensus        85 v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~  161 (170)
T cd01898          85 VIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK---ELWGKPVFPISALTGEGLDE  161 (170)
T ss_pred             EEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh---hCCCCCEEEEecCCCCCHHH
Confidence            9999998 78888888877775432 2347899999999998654333222222211   11245699999999999999


Q ss_pred             HHHHHHHH
Q 030931          145 GLDWLAST  152 (169)
Q Consensus       145 ~~~~l~~~  152 (169)
                      +|+++.+.
T Consensus       162 l~~~i~~~  169 (170)
T cd01898         162 LLRKLAEL  169 (170)
T ss_pred             HHHHHHhh
Confidence            99999865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=2.6e-23  Score=154.89  Aligned_cols=152  Identities=19%  Similarity=0.090  Sum_probs=111.4

Q ss_pred             ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEE-CCEEEEEEEcCCCCC-------chhhHHhhccCCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQY-KNVIFTVWDVGGQEK-------LRPLWRHYFNNTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~-------~~~~~~~~~~~~~~ii~   66 (169)
                      |++-+++|||||+++++.       .+.+|...+...+.+ ....+.+||+||...       ....+..+++.++++++
T Consensus       163 lVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~  242 (335)
T PRK12299        163 LVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLH  242 (335)
T ss_pred             EEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEE
Confidence            466899999999998842       346677777777777 567899999999642       22233345668999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           67 VVDSLDRERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGAMTPM-EVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        67 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      |+|+++.++++....|..++... ....+.|+++|+||+|+.+..... +....+    ....+++++++||++++|+++
T Consensus       243 ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~~~~~~i~~iSAktg~GI~e  318 (335)
T PRK12299        243 LVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LAALGGPVFLISAVTGEGLDE  318 (335)
T ss_pred             EEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HHhcCCCEEEEEcCCCCCHHH
Confidence            99999887888888888877543 223478999999999986543211 111111    112235699999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030931          145 GLDWLASTLKEMR  157 (169)
Q Consensus       145 ~~~~l~~~~~~~~  157 (169)
                      +++++.+.+.+.+
T Consensus       319 L~~~L~~~l~~~~  331 (335)
T PRK12299        319 LLRALWELLEEAR  331 (335)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999887644

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=2.3e-23  Score=142.44  Aligned_cols=148  Identities=16%  Similarity=0.040  Sum_probs=104.4

Q ss_pred             ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEEC-CEEEEEEEcCCCCC----chhh---HHhhccCCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYK-NVIFTVWDVGGQEK----LRPL---WRHYFNNTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~----~~~~---~~~~~~~~~~ii~   66 (169)
                      +++.+|+|||||++++...       ..+|.......+..+ +.++.+|||||...    ...+   ....++.++++++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~   80 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH   80 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence            5789999999999987433       245555555566677 89999999999732    1222   2345778999999


Q ss_pred             EEECCCh------hhHHHHHHHHHHHhcCCC------CCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEe
Q 030931           67 VVDSLDR------ERIGKAKQEFQAIIKDPF------MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGT  134 (169)
Q Consensus        67 v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (169)
                      |+|+++.      .++.....|...+.....      ..+.|+++|+||+|+.......+..   ..........+++++
T Consensus        81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~  157 (176)
T cd01881          81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VRELALEEGAEVVPI  157 (176)
T ss_pred             EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HHHHhcCCCCCEEEE
Confidence            9999887      567777777666654322      2479999999999996543322221   001112334569999


Q ss_pred             eeccCCCHHHHHHHHHHH
Q 030931          135 CALKGDGLYEGLDWLAST  152 (169)
Q Consensus       135 Sa~~~~gi~~~~~~l~~~  152 (169)
                      ||+++.|+++++++++..
T Consensus       158 Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         158 SAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             ehhhhcCHHHHHHHHHhh
Confidence            999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.89  E-value=5.4e-23  Score=138.32  Aligned_cols=141  Identities=18%  Similarity=0.097  Sum_probs=99.1

Q ss_pred             ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchh------hHHhhcc--CCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP------LWRHYFN--NTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~--~~~~ii~   66 (169)
                      |++.+|+|||||++++...       ...|.......+.+++..+.+|||||++.+..      ++..++.  .++++++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~   80 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN   80 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence            5789999999999988332       22244455566777788999999999987654      3555664  9999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931           67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus        67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      |+|.++.+..   ..+...+.+    .+.|+++|+||+|+.+..........+.    ...+.+++++||.++.|+.+++
T Consensus        81 v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~iSa~~~~~~~~l~  149 (158)
T cd01879          81 VVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLS----ELLGVPVVPTSARKGEGIDELK  149 (158)
T ss_pred             EeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHH----HhhCCCeEEEEccCCCCHHHHH
Confidence            9999875432   234434322    2689999999999965432111111111    1223569999999999999999


Q ss_pred             HHHHHHH
Q 030931          147 DWLASTL  153 (169)
Q Consensus       147 ~~l~~~~  153 (169)
                      +++...+
T Consensus       150 ~~l~~~~  156 (158)
T cd01879         150 DAIAELA  156 (158)
T ss_pred             HHHHHHh
Confidence            9998764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PLN00023 GTP-binding protein; Provisional

Probab=99.89  E-value=3.8e-23  Score=151.32  Aligned_cols=107  Identities=17%  Similarity=0.261  Sum_probs=90.4

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE---------------CCEEEEEEEcCCCCCchhhHHhhcc
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY---------------KNVIFTVWDVGGQEKLRPLWRHYFN   59 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~---------------~~~~~~i~D~~G~~~~~~~~~~~~~   59 (169)
                      |++..|+|||||+++|     ...+.||+|.++  ..+.+               ..+.++||||+|+++|+.++..+++
T Consensus        26 LLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr  105 (334)
T PLN00023         26 VVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYS  105 (334)
T ss_pred             EECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhcc
Confidence            6779999999999986     456789998764  33443               2478999999999999999999999


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHhcCCC-----------CCCCeEEEEEeCCCCCC
Q 030931           60 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF-----------MLNSVILVFANKQDMKG  108 (169)
Q Consensus        60 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~piivv~nK~Dl~~  108 (169)
                      +++++|+|||++++.+|+.+..|+..+.....           ..++|+++||||+|+..
T Consensus       106 ~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~  165 (334)
T PLN00023        106 QINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP  165 (334)
T ss_pred             CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence            99999999999999999999999999875421           13589999999999964

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.89  E-value=9.5e-23  Score=138.49  Aligned_cols=147  Identities=21%  Similarity=0.085  Sum_probs=101.5

Q ss_pred             ccccCCCCCceeeeeceeee-------eeeeeEEEEEEEEC---CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            2 LRVKQPYCTSCTLVKFYLLF-------LLLVRFNVEKVQYK---NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~-------~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +++.+++|||||++++....       .+|.......+...   +..+.+|||||++.+..++..+++.+|++++|+|++
T Consensus         5 iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~   84 (168)
T cd01887           5 VMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAAD   84 (168)
T ss_pred             EEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECC
Confidence            67799999999999873222       33444444455543   789999999999999999998999999999999998


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhh---hCCCC--CCCceeEEEEeeeccCCCHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEG---LGLFD--LKNRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      +...-.. ...+..+ +.   .+.|+++|+||+|+.+.. .+.+...   +....  .....++++++||++|+|+.+++
T Consensus        85 ~~~~~~~-~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  158 (168)
T cd01887          85 DGVMPQT-IEAIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL  158 (168)
T ss_pred             CCccHHH-HHHHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHH
Confidence            7432111 1112222 11   368999999999986432 2222221   11110  01234679999999999999999


Q ss_pred             HHHHHHHH
Q 030931          147 DWLASTLK  154 (169)
Q Consensus       147 ~~l~~~~~  154 (169)
                      +++.+...
T Consensus       159 ~~l~~~~~  166 (168)
T cd01887         159 EAILLLAE  166 (168)
T ss_pred             HHHHHhhh
Confidence            99988654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01878 HflX HflX subfamily

Probab=99.89  E-value=6.2e-23  Score=143.89  Aligned_cols=142  Identities=16%  Similarity=0.061  Sum_probs=100.7

Q ss_pred             ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEECC-EEEEEEEcCCCCCc---------hhhHHhhccCCCEE
Q 030931            2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYKN-VIFTVWDVGGQEKL---------RPLWRHYFNNTDGL   64 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~---------~~~~~~~~~~~~~i   64 (169)
                      |++.+|+|||||++++..       .+.+|.......+.+++ ..+.+|||||....         ...+ ..+..+|++
T Consensus        46 iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~i  124 (204)
T cd01878          46 LVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLL  124 (204)
T ss_pred             EECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeE
Confidence            567999999999998743       24566666666666654 48999999997431         1111 236789999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      ++|+|++++.++.....|...+.. ....+.|+++|+||+|+.+.....   ..     ......+++++||+++.|+++
T Consensus       125 i~v~D~~~~~~~~~~~~~~~~l~~-~~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~~~~~~~~~~Sa~~~~gi~~  195 (204)
T cd01878         125 LHVVDASDPDYEEQIETVEKVLKE-LGAEDIPMILVLNKIDLLDDEELE---ER-----LEAGRPDAVFISAKTGEGLDE  195 (204)
T ss_pred             EEEEECCCCChhhHHHHHHHHHHH-cCcCCCCEEEEEEccccCChHHHH---HH-----hhcCCCceEEEEcCCCCCHHH
Confidence            999999988887776655544422 223468999999999986542211   11     122345699999999999999


Q ss_pred             HHHHHHHHH
Q 030931          145 GLDWLASTL  153 (169)
Q Consensus       145 ~~~~l~~~~  153 (169)
                      +++++...+
T Consensus       196 l~~~L~~~~  204 (204)
T cd01878         196 LLEAIEELL  204 (204)
T ss_pred             HHHHHHhhC
Confidence            999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.89  E-value=1.4e-25  Score=148.48  Aligned_cols=148  Identities=16%  Similarity=0.197  Sum_probs=124.0

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE----EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +.++.+.||||+++||     ...|.-|+|+++..    +..+.+...+||++|++.|..+...|+++|.+.++||+-+|
T Consensus        25 ivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTD  104 (246)
T KOG4252|consen   25 IVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTD  104 (246)
T ss_pred             EECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEeccc
Confidence            4568999999999986     78899999987644    44578889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+|+.+..|..++.++.  .++|.++|-||+|+.+..  +..+++...     +..+..++.+|++...|+..+|..++
T Consensus       105 r~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~la-----k~l~~RlyRtSvked~NV~~vF~YLa  177 (246)
T KOG4252|consen  105 RYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLA-----KKLHKRLYRTSVKEDFNVMHVFAYLA  177 (246)
T ss_pred             HHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHH-----HHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence            999999999999997654  689999999999997532  233333221     23345689999999999999999999


Q ss_pred             HHHHhh
Q 030931          151 STLKEM  156 (169)
Q Consensus       151 ~~~~~~  156 (169)
                      +.+.+.
T Consensus       178 eK~~q~  183 (246)
T KOG4252|consen  178 EKLTQQ  183 (246)
T ss_pred             HHHHHH
Confidence            877665

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.89  E-value=1.7e-22  Score=150.33  Aligned_cols=148  Identities=21%  Similarity=0.097  Sum_probs=106.2

Q ss_pred             ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEECC-EEEEEEEcCCCCCc----hhhH---HhhccCCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYKN-VIFTVWDVGGQEKL----RPLW---RHYFNNTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~----~~~~---~~~~~~~~~ii~   66 (169)
                      |++.+++|||||++++...       +.+|...+...+.+.+ ..+.+||+||....    ..+.   ...++.++++++
T Consensus       162 lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~  241 (329)
T TIGR02729       162 LVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLH  241 (329)
T ss_pred             EEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEE
Confidence            5678999999999988433       2456666666677766 89999999997532    1233   334567999999


Q ss_pred             EEECCCh---hhHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931           67 VVDSLDR---ERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  142 (169)
Q Consensus        67 v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  142 (169)
                      |+|+++.   ++++....|..++... ....+.|+++|+||+|+.+....++..+.+.    +..+.+++++||++++|+
T Consensus       242 VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~----~~~~~~vi~iSAktg~GI  317 (329)
T TIGR02729       242 LIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELK----KALGKPVFPISALTGEGL  317 (329)
T ss_pred             EEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHH----HHcCCcEEEEEccCCcCH
Confidence            9999876   6777777777666442 2235789999999999965433333333322    122356999999999999


Q ss_pred             HHHHHHHHHHH
Q 030931          143 YEGLDWLASTL  153 (169)
Q Consensus       143 ~~~~~~l~~~~  153 (169)
                      +++++++.+.+
T Consensus       318 ~eL~~~I~~~l  328 (329)
T TIGR02729       318 DELLYALAELL  328 (329)
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=7.1e-23  Score=136.71  Aligned_cols=150  Identities=18%  Similarity=0.213  Sum_probs=128.4

Q ss_pred             ccccCCCCCceeeee-----ceeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVK-----FYLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~-----f~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      |.++.|.|||+++.|     |...+.||+|+....+.+    +.+++..|||+|++.+......++-++.+.|++||++.
T Consensus        15 lvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVts   94 (216)
T KOG0096|consen   15 LVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTS   94 (216)
T ss_pred             EecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeee
Confidence            556899999999995     688899999988776554    56999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      +-++.++..|.+++.+.+  .++||+++|||.|..+..     ...........++++|+++||+.+.|.+..|.|+.+.
T Consensus        95 r~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~-----~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarK  167 (216)
T KOG0096|consen   95 RFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK-----VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARK  167 (216)
T ss_pred             hhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc-----cccccceeeecccceeEEeecccccccccchHHHhhh
Confidence            999999999999998866  579999999999986542     1222334446677889999999999999999999998


Q ss_pred             HHhhhc
Q 030931          153 LKEMRA  158 (169)
Q Consensus       153 ~~~~~~  158 (169)
                      +.....
T Consensus       168 l~G~p~  173 (216)
T KOG0096|consen  168 LTGDPS  173 (216)
T ss_pred             hcCCCC
Confidence            877654

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.88  E-value=2.8e-23  Score=137.69  Aligned_cols=127  Identities=14%  Similarity=0.019  Sum_probs=86.8

Q ss_pred             ccccCCCCCceeeeeceeee---eeeeeEEEEEEEECCEEEEEEEcCCCC-----CchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKFYLLF---LLLVRFNVEKVQYKNVIFTVWDVGGQE-----KLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~---~~t~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+++|||||+++|....   .+|.+.     ++..   .+|||||+.     .+..+.. .++++|++++|||++++
T Consensus         5 liG~~~vGKSsL~~~l~~~~~~~~~t~~~-----~~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~   75 (142)
T TIGR02528         5 FIGSVGCGKTTLTQALQGEEILYKKTQAV-----EYND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDP   75 (142)
T ss_pred             EECCCCCCHHHHHHHHcCCccccccceeE-----EEcC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCC
Confidence            67899999999999985433   344433     2322   789999983     2333333 47899999999999998


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCCCCCce-eEEEEeeeccCCCHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRK-WHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      .++.. ..|....       ..|+++|+||+|+.+. ...++..+..     +..+ .+++++||++|.|++++|+++.
T Consensus        76 ~s~~~-~~~~~~~-------~~p~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528        76 ESRFP-PGFASIF-------VKPVIGLVTKIDLAEADVDIERAKELL-----ETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             CcCCC-hhHHHhc-------cCCeEEEEEeeccCCcccCHHHHHHHH-----HHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence            88754 2343321       2399999999998642 2222222211     1122 2689999999999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.88  E-value=1.6e-22  Score=134.06  Aligned_cols=146  Identities=23%  Similarity=0.252  Sum_probs=108.9

Q ss_pred             ccccCCCCCceeeeecee------eeeeeeeEEEEEEEEC----CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            2 LRVKQPYCTSCTLVKFYL------LFLLLVRFNVEKVQYK----NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~------~~~~t~~~~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +++.+|+|||||++++..      ...+|. .+.......    ...+.+||+||+..+...+..+++.++++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            578899999999998733      333555 555554443    788999999999988888888999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +..++.....|...........+.|+++++||+|+..............  .......+++++|+.++.|++++++++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQ--LAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHH--HHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            9988888887733333333446899999999999875543332210000  1123456799999999999999999975

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01894 EngA1 EngA1 subfamily

Probab=99.88  E-value=8.2e-22  Score=132.26  Aligned_cols=140  Identities=15%  Similarity=0.096  Sum_probs=96.1

Q ss_pred             CccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCchh--------hHHhhccCCCEE
Q 030931            1 MLRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP--------LWRHYFNNTDGL   64 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~~~i   64 (169)
                      .|++.+|+|||||++++....        ..|...........+..+.+|||||+..+..        .+...++.+|++
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i   80 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI   80 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence            367899999999999873221        1133344455666789999999999988654        334567899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      ++|+|..+..+....  ++..+++.   .+.|+++|+||+|+.+.....+....++.       .+++++||+++.|+++
T Consensus        81 i~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~gv~~  148 (157)
T cd01894          81 LFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLGF-------GEPIPISAEHGRGIGD  148 (157)
T ss_pred             EEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcCC-------CCeEEEecccCCCHHH
Confidence            999999765433322  22233332   25899999999998754222111111111       1489999999999999


Q ss_pred             HHHHHHHH
Q 030931          145 GLDWLAST  152 (169)
Q Consensus       145 ~~~~l~~~  152 (169)
                      +|+++++.
T Consensus       149 l~~~l~~~  156 (157)
T cd01894         149 LLDAILEL  156 (157)
T ss_pred             HHHHHHhh
Confidence            99999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=4.6e-22  Score=155.01  Aligned_cols=142  Identities=18%  Similarity=0.134  Sum_probs=97.8

Q ss_pred             ccccCCCCCceeeeeceeee----eee----eeEEEEEEEECCEEEEEEEcCCCCC--------chhhHHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF----LLL----VRFNVEKVQYKNVIFTVWDVGGQEK--------LRPLWRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~----~~t----~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~~~ii   65 (169)
                      |++.+++|||||++++....    .++    .......+.+++..+.+|||||.+.        +...+..+++.||++|
T Consensus        43 IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il  122 (472)
T PRK03003         43 VVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVL  122 (472)
T ss_pred             EEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEE
Confidence            57799999999999884321    122    2233445566788999999999763        3344566789999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      +|+|+++..++.. ..+...+ +.   .+.|+++|+||+|+.....  +........    .+ ..+++||++|.|++++
T Consensus       123 ~VvD~~~~~s~~~-~~i~~~l-~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~g----~~-~~~~iSA~~g~gi~eL  190 (472)
T PRK03003        123 FVVDATVGATATD-EAVARVL-RR---SGKPVILAANKVDDERGEA--DAAALWSLG----LG-EPHPVSALHGRGVGDL  190 (472)
T ss_pred             EEEECCCCCCHHH-HHHHHHH-HH---cCCCEEEEEECccCCccch--hhHHHHhcC----CC-CeEEEEcCCCCCcHHH
Confidence            9999998765543 2233222 21   3789999999999864321  111111111    11 2579999999999999


Q ss_pred             HHHHHHHHHh
Q 030931          146 LDWLASTLKE  155 (169)
Q Consensus       146 ~~~l~~~~~~  155 (169)
                      |++++..+.+
T Consensus       191 ~~~i~~~l~~  200 (472)
T PRK03003        191 LDAVLAALPE  200 (472)
T ss_pred             HHHHHhhccc
Confidence            9999998865

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.88  E-value=1.1e-21  Score=131.24  Aligned_cols=144  Identities=17%  Similarity=0.159  Sum_probs=105.9

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +.+.+|+|||||++++     ...+.++.+.+...  +..++  +.+.+||+||+..+..++..+++.+++++.++|+..
T Consensus         6 ~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~   85 (161)
T TIGR00231         6 IVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVI   85 (161)
T ss_pred             EECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEee
Confidence            5678999999999976     23334555544433  55566  889999999999999999999999999999999987


Q ss_pred             h-hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 R-ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~-~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      . .++.... .|...+.+.... +.|+++++||+|+............+..    ....+++++||++|.|+.++|+++-
T Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231        86 LVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAKLKTHVAFLFAK----LNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             eehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcchhhHHHHHHHhh----ccCCceEEeecCCCCCHHHHHHHhh
Confidence            7 6666555 555555443322 7899999999999654322333333321    2234599999999999999999863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.87  E-value=5.1e-22  Score=138.29  Aligned_cols=150  Identities=16%  Similarity=0.111  Sum_probs=100.6

Q ss_pred             ccccCCCCCceeeeecee---e----e------------eeeeeE----EEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931            2 LRVKQPYCTSCTLVKFYL---L----F------------LLLVRF----NVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF   58 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~---~----~------------~~t~~~----~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   58 (169)
                      +++..++|||||+++|..   .    +            .++.|.    ....+..+.+++++|||||+++|..++..++
T Consensus         7 ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~   86 (194)
T cd01891           7 IIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVL   86 (194)
T ss_pred             EEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHH
Confidence            578999999999998732   1    1            112232    2345677899999999999999999999999


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhC-C-CCCCCceeEEEE
Q 030931           59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLG-L-FDLKNRKWHIQG  133 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~-~-~~~~~~~~~~~~  133 (169)
                      +.+|++++|+|+++.. +.....++.....    .++|+++|+||+|+.+....   +++...+. . ......++++++
T Consensus        87 ~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~  161 (194)
T cd01891          87 SMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLY  161 (194)
T ss_pred             HhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEE
Confidence            9999999999998742 2333334444322    36899999999999653221   22222221 0 011234678999


Q ss_pred             eeeccCCCHHHH------HHHHHHHHHhh
Q 030931          134 TCALKGDGLYEG------LDWLASTLKEM  156 (169)
Q Consensus       134 ~Sa~~~~gi~~~------~~~l~~~~~~~  156 (169)
                      +||++|.|+.+.      +++++.++.+.
T Consensus       162 ~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~  190 (194)
T cd01891         162 ASAKNGWASLNLEDPSEDLEPLFDTIIEH  190 (194)
T ss_pred             eehhccccccccccchhhHHHHHHHHHhc
Confidence            999999887443      44555555443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.87  E-value=2.8e-21  Score=133.46  Aligned_cols=148  Identities=20%  Similarity=0.179  Sum_probs=106.4

Q ss_pred             ccccCCCCCceeeeeceeee-----------------------eeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931            2 LRVKQPYCTSCTLVKFYLLF-----------------------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF   58 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~-----------------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   58 (169)
                      +.+.+|+|||||++.+....                       ..|.......+..+...+.+|||||+..+...+..++
T Consensus         4 v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~   83 (189)
T cd00881           4 IAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGL   83 (189)
T ss_pred             EEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHH
Confidence            56799999999999772221                       1233444555677789999999999999888899999


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCCC---------C
Q 030931           59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDL---------K  125 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~----~~~~~~~~~~~~---------~  125 (169)
                      +.+|++++|+|.++...... ..++.....    .+.|+++++||+|+......    .++.+.+.....         .
T Consensus        84 ~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (189)
T cd00881          84 SVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRN  158 (189)
T ss_pred             HhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhccc
Confidence            99999999999987554332 233333321    47899999999999753222    223333322111         1


Q ss_pred             CceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931          126 NRKWHIQGTCALKGDGLYEGLDWLASTLK  154 (169)
Q Consensus       126 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  154 (169)
                      ....+++++||++|.|+.++++++...+.
T Consensus       159 ~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         159 GLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             CCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence            24578999999999999999999998864

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK15494 era GTPase Era; Provisional

Probab=99.86  E-value=2.2e-21  Score=145.24  Aligned_cols=146  Identities=16%  Similarity=0.144  Sum_probs=98.9

Q ss_pred             ccccCCCCCceeeeece--------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCC-chhhH-------HhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFY--------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEK-LRPLW-------RHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~--------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~-------~~~~~~~~~ii   65 (169)
                      |++.+++|||||++++.        +.+.+|.......+..++..+.+|||||+.. +..+.       ...+++||+++
T Consensus        57 ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil  136 (339)
T PRK15494         57 IIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVL  136 (339)
T ss_pred             EEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEE
Confidence            56799999999999873        2334454444455677888999999999843 22221       13477999999


Q ss_pred             EEEECCChhhHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           66 YVVDSLDRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      +|+|..+  ++..... |+..+ +.   .+.|+++|+||+|+.+. ...+..+.+..   ......++++||++|.|+++
T Consensus       137 ~VvD~~~--s~~~~~~~il~~l-~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~---~~~~~~i~~iSAktg~gv~e  206 (339)
T PRK15494        137 LIIDSLK--SFDDITHNILDKL-RS---LNIVPIFLLNKIDIESK-YLNDIKAFLTE---NHPDSLLFPISALSGKNIDG  206 (339)
T ss_pred             EEEECCC--CCCHHHHHHHHHH-Hh---cCCCEEEEEEhhcCccc-cHHHHHHHHHh---cCCCcEEEEEeccCccCHHH
Confidence            9999754  3444433 34333 22   24577889999998643 23333333321   11124699999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030931          145 GLDWLASTLKEMR  157 (169)
Q Consensus       145 ~~~~l~~~~~~~~  157 (169)
                      +|+++...+.+..
T Consensus       207 L~~~L~~~l~~~~  219 (339)
T PRK15494        207 LLEYITSKAKISP  219 (339)
T ss_pred             HHHHHHHhCCCCC
Confidence            9999998877643

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.86  E-value=1.8e-21  Score=146.04  Aligned_cols=140  Identities=16%  Similarity=0.037  Sum_probs=100.5

Q ss_pred             ccccCCCCCceeeeece-------eeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCC---------chhhHHhhccCCCEE
Q 030931            2 LRVKQPYCTSCTLVKFY-------LLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEK---------LRPLWRHYFNNTDGL   64 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-------~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~---------~~~~~~~~~~~~~~i   64 (169)
                      |.+.+++|||||+|++.       +.+++|.+.....+.. ++..+.+|||+|..+         |...+ ..+++||++
T Consensus       194 lvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADli  272 (351)
T TIGR03156       194 LVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLL  272 (351)
T ss_pred             EECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEE
Confidence            56789999999999873       3346777777777777 578999999999722         22222 247899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      ++|+|++++.+++....|...+ +.....+.|+++|+||+|+.+.   .++.....      ...+++++||++|.|+++
T Consensus       273 l~VvD~s~~~~~~~~~~~~~~L-~~l~~~~~piIlV~NK~Dl~~~---~~v~~~~~------~~~~~i~iSAktg~GI~e  342 (351)
T TIGR03156       273 LHVVDASDPDREEQIEAVEKVL-EELGAEDIPQLLVYNKIDLLDE---PRIERLEE------GYPEAVFVSAKTGEGLDL  342 (351)
T ss_pred             EEEEECCCCchHHHHHHHHHHH-HHhccCCCCEEEEEEeecCCCh---HhHHHHHh------CCCCEEEEEccCCCCHHH
Confidence            9999999988777665444332 3222347899999999998643   22221111      112489999999999999


Q ss_pred             HHHHHHHH
Q 030931          145 GLDWLAST  152 (169)
Q Consensus       145 ~~~~l~~~  152 (169)
                      +++++...
T Consensus       343 L~~~I~~~  350 (351)
T TIGR03156       343 LLEAIAER  350 (351)
T ss_pred             HHHHHHhh
Confidence            99998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=1.9e-21  Score=151.60  Aligned_cols=150  Identities=12%  Similarity=0.007  Sum_probs=101.3

Q ss_pred             ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCC----------chhhH-HhhccCCC
Q 030931            2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEK----------LRPLW-RHYFNNTD   62 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~-~~~~~~~~   62 (169)
                      +++.+++|||||++++....        ..|.......+..++..+.+|||||..+          +..+. ..+++.+|
T Consensus       216 iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad  295 (472)
T PRK03003        216 LVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAE  295 (472)
T ss_pred             EECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCC
Confidence            56799999999999873322        2222223345666788899999999632          22222 23578999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931           63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  142 (169)
Q Consensus        63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  142 (169)
                      ++++|+|+++..++.... ++..+.+    .+.|+++|+||+|+.+......+..............+++++||++|.|+
T Consensus       296 ~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv  370 (472)
T PRK03003        296 VAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAV  370 (472)
T ss_pred             EEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCH
Confidence            999999999887777653 4444432    46899999999999653222222222211111223357899999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 030931          143 YEGLDWLASTLKEM  156 (169)
Q Consensus       143 ~~~~~~l~~~~~~~  156 (169)
                      +++|+.+.+.+...
T Consensus       371 ~~lf~~i~~~~~~~  384 (472)
T PRK03003        371 DKLVPALETALESW  384 (472)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999876543

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.86  E-value=1.8e-21  Score=137.72  Aligned_cols=154  Identities=19%  Similarity=0.177  Sum_probs=113.1

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++-+|+|||||+++|     .+.+.||++..+.....    ..+++.+|||+|+++++.++..++.+++++++|+|.++
T Consensus        10 v~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~   89 (219)
T COG1100          10 VLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTL   89 (219)
T ss_pred             EEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEeccc
Confidence            5778999999999987     45566687765544333    26889999999999999999999999999999999998


Q ss_pred             hhh-HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-HH------------hhhCCCCCCCceeEEEEeeec-
Q 030931           73 RER-IGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME-VC------------EGLGLFDLKNRKWHIQGTCAL-  137 (169)
Q Consensus        73 ~~~-~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~~------------~~~~~~~~~~~~~~~~~~Sa~-  137 (169)
                      ..+ ++....|...+..... .+.|+++++||+|+........ +.            ...... .......++++|++ 
T Consensus        90 ~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~  167 (219)
T COG1100          90 RESSDELTEEWLEELRELAP-DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVL-PEVANPALLETSAKS  167 (219)
T ss_pred             chhhhHHHHHHHHHHHHhCC-CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhh-hhhcccceeEeeccc
Confidence            554 4555677777655332 4699999999999976532111 00            000000 01112338999999 


Q ss_pred             -cCCCHHHHHHHHHHHHHhhh
Q 030931          138 -KGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       138 -~~~gi~~~~~~l~~~~~~~~  157 (169)
                       ++.++.++|.++...+.+..
T Consensus       168 ~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         168 LTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             CCCcCHHHHHHHHHHHHHHhh
Confidence             99999999999999886543

>cd01889 SelB_euk SelB subfamily

Probab=99.86  E-value=1.6e-21  Score=135.52  Aligned_cols=150  Identities=15%  Similarity=-0.004  Sum_probs=100.1

Q ss_pred             ccccCCCCCceeeeecee--------------eeeeeeeEEEEEEEEC--------------CEEEEEEEcCCCCCchhh
Q 030931            2 LRVKQPYCTSCTLVKFYL--------------LFLLLVRFNVEKVQYK--------------NVIFTVWDVGGQEKLRPL   53 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~--------------~~~~t~~~~~~~~~~~--------------~~~~~i~D~~G~~~~~~~   53 (169)
                      +++..++|||||+++|..              ....|++..+..+.+.              ++.+.+|||||+..+...
T Consensus         5 i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~   84 (192)
T cd01889           5 VLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRT   84 (192)
T ss_pred             EEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHH
Confidence            567899999999998743              1135666665555443              789999999999765443


Q ss_pred             HHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCC--CCCCc
Q 030931           54 WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLF--DLKNR  127 (169)
Q Consensus        54 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~----~~~~~~~~~~--~~~~~  127 (169)
                      .....+.+|++++|+|+++..+......+.  +...   .+.|+++++||+|+......    +++.+.+...  .....
T Consensus        85 ~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~  159 (192)
T cd01889          85 IIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFK  159 (192)
T ss_pred             HHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence            334456789999999998754433322222  1111   25799999999998643221    2222221100  01123


Q ss_pred             eeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          128 KWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       128 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      +++++++||++|.|++++++++.+++..+
T Consensus       160 ~~~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         160 NSPIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             CCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence            56799999999999999999999887654

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK04213 GTP-binding protein; Provisional

Probab=99.86  E-value=1.5e-21  Score=136.53  Aligned_cols=149  Identities=21%  Similarity=0.179  Sum_probs=93.9

Q ss_pred             ccccCCCCCceeeeeceee-----eeeeeeEEEEEEEECCEEEEEEEcCC-----------CCCchhhHHhhcc----CC
Q 030931            2 LRVKQPYCTSCTLVKFYLL-----FLLLVRFNVEKVQYKNVIFTVWDVGG-----------QEKLRPLWRHYFN----NT   61 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-----~~~t~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~~----~~   61 (169)
                      +++.+++|||||++++...     +.|+.......+..+  .+.+|||||           +++++..+..++.    .+
T Consensus        14 i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (201)
T PRK04213         14 FVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRI   91 (201)
T ss_pred             EECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhh
Confidence            5679999999999987432     233333333344444  689999999           4556666666654    45


Q ss_pred             CEEEEEEECCChhhHH----------HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCC-CCCce
Q 030931           62 DGLIYVVDSLDRERIG----------KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFD-LKNRK  128 (169)
Q Consensus        62 ~~ii~v~d~~~~~~~~----------~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~-~~~~~  128 (169)
                      +++++|+|.++...+.          ....++. .+..   .+.|+++|+||+|+.+..  ...++.+.++... ....+
T Consensus        92 ~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  167 (201)
T PRK04213         92 LAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFD-FLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQ  167 (201)
T ss_pred             eEEEEEEeCccccccccccccCCCcHHHHHHHH-HHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccC
Confidence            7888888875432210          0011122 2221   378999999999986543  2234444444210 01112


Q ss_pred             eEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          129 WHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       129 ~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      .+++++||++| |++++++++.+.+.+.+
T Consensus       168 ~~~~~~SA~~g-gi~~l~~~l~~~~~~~~  195 (201)
T PRK04213        168 DIIAPISAKKG-GIEELKEAIRKRLHEAK  195 (201)
T ss_pred             CcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence            35899999999 99999999999876654

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.86  E-value=8.7e-21  Score=127.20  Aligned_cols=135  Identities=16%  Similarity=0.014  Sum_probs=97.8

Q ss_pred             ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCchhh--------HHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~~~ii   65 (169)
                      +++..|+|||||++++....        ..|.......+...+.++.+|||||...+...        ....+..+|+++
T Consensus         6 l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v   85 (157)
T cd04164           6 IVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVL   85 (157)
T ss_pred             EECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEE
Confidence            67899999999999873222        22223334456667889999999998765422        234677999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      +|+|++++.+......+..       ..+.|+++|+||+|+.+....          .......+++++||+++.|+.++
T Consensus        86 ~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~----------~~~~~~~~~~~~Sa~~~~~v~~l  148 (157)
T cd04164          86 FVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL----------LSLLAGKPIIAISAKTGEGLDEL  148 (157)
T ss_pred             EEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc----------ccccCCCceEEEECCCCCCHHHH
Confidence            9999998777666543322       247899999999998754322          11233456999999999999999


Q ss_pred             HHHHHHHH
Q 030931          146 LDWLASTL  153 (169)
Q Consensus       146 ~~~l~~~~  153 (169)
                      ++++...+
T Consensus       149 ~~~l~~~~  156 (157)
T cd04164         149 KEALLELA  156 (157)
T ss_pred             HHHHHHhh
Confidence            99988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.85  E-value=4.8e-21  Score=148.16  Aligned_cols=136  Identities=13%  Similarity=0.104  Sum_probs=101.1

Q ss_pred             ccccCCCCCceeeeecee--------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhh--------HHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYL--------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~--------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~~~ii   65 (169)
                      +++.+++|||||+|++..        ....|..+....+..++..+.+|||||.+.+...        ...+++.+|+++
T Consensus       220 ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il  299 (449)
T PRK05291        220 IAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVL  299 (449)
T ss_pred             EECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEE
Confidence            567999999999998732        2233444555667778899999999998765432        224678999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      +|+|++++.+++....|..       ..+.|+++|+||+|+.+.....           .....+++++||++|.|++++
T Consensus       300 ~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~~~-----------~~~~~~~i~iSAktg~GI~~L  361 (449)
T PRK05291        300 LVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEIDLE-----------EENGKPVIRISAKTGEGIDEL  361 (449)
T ss_pred             EEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccchhh-----------hccCCceEEEEeeCCCCHHHH
Confidence            9999998877765443332       2478999999999996432211           112245899999999999999


Q ss_pred             HHHHHHHHHh
Q 030931          146 LDWLASTLKE  155 (169)
Q Consensus       146 ~~~l~~~~~~  155 (169)
                      ++++.+.+..
T Consensus       362 ~~~L~~~l~~  371 (449)
T PRK05291        362 REAIKELAFG  371 (449)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.85  E-value=4.9e-21  Score=134.12  Aligned_cols=150  Identities=21%  Similarity=0.199  Sum_probs=105.1

Q ss_pred             ccccCCCCCceeeeecee----eeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCC-CEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKFYL----LFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNT-DGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~----~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~-~~ii~v~d~~~   72 (169)
                      |++..|+|||||++++..    ...++...+...+..    .+..+.+||+|||++++..+..+++.+ +++|+|+|+++
T Consensus         5 l~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~   84 (203)
T cd04105           5 LLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSAT   84 (203)
T ss_pred             EEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECcc
Confidence            567899999999998722    122333333333333    368899999999999999999999999 99999999998


Q ss_pred             h-hhHHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-----------C-----------------
Q 030931           73 R-ERIGKAKQEFQAIIKDP--FMLNSVILVFANKQDMKGAMTPMEVCEGLG-----------L-----------------  121 (169)
Q Consensus        73 ~-~~~~~~~~~~~~~~~~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----------~-----------------  121 (169)
                      . .++..+..|+..++...  ..++.|+++++||+|+..+.+.+.+.+.+.           .                 
T Consensus        85 ~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~  164 (203)
T cd04105          85 FQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGD  164 (203)
T ss_pred             chhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccccccc
Confidence            7 67888777776665422  125799999999999875433211111100           0                 


Q ss_pred             ------CC-CCCceeEEEEeeeccCC-CHHHHHHHHHH
Q 030931          122 ------FD-LKNRKWHIQGTCALKGD-GLYEGLDWLAS  151 (169)
Q Consensus       122 ------~~-~~~~~~~~~~~Sa~~~~-gi~~~~~~l~~  151 (169)
                            .. .....+.++++|++.+. |+++.-+|+.+
T Consensus       165 ~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~  202 (203)
T cd04105         165 KGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE  202 (203)
T ss_pred             ccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence                  00 01234679999999887 69999888864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.85  E-value=1.7e-20  Score=144.58  Aligned_cols=140  Identities=12%  Similarity=0.055  Sum_probs=102.5

Q ss_pred             ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhh--------HHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~~~ii   65 (169)
                      |++.+++|||||+|++...        +..|..+....+..++..+++|||||+..+...        ...+++.+|+++
T Consensus       208 IvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il  287 (442)
T TIGR00450       208 IVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVI  287 (442)
T ss_pred             EECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEE
Confidence            5779999999999987322        222344445567778899999999998765432        235788999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      +|+|.+++.+++..  |+..+..    .+.|+++|+||+|+... +..++.+        ..+.+++++||++ .||+++
T Consensus       288 ~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~--------~~~~~~~~vSak~-~gI~~~  351 (442)
T TIGR00450       288 YVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVS--------SKVLNSSNLSAKQ-LKIKAL  351 (442)
T ss_pred             EEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhh--------hcCCceEEEEEec-CCHHHH
Confidence            99999988777664  6655522    36899999999998643 2222221        2234589999998 699999


Q ss_pred             HHHHHHHHHhhh
Q 030931          146 LDWLASTLKEMR  157 (169)
Q Consensus       146 ~~~l~~~~~~~~  157 (169)
                      |+.+...+.+..
T Consensus       352 ~~~L~~~i~~~~  363 (442)
T TIGR00450       352 VDLLTQKINAFY  363 (442)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR00436 era GTP-binding protein Era

Probab=99.85  E-value=7.2e-21  Score=138.73  Aligned_cols=146  Identities=16%  Similarity=0.053  Sum_probs=95.9

Q ss_pred             ccccCCCCCceeeeeceeeee--------eeeeEEEEEEEECCEEEEEEEcCCCCCch-h-------hHHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLFL--------LLVRFNVEKVQYKNVIFTVWDVGGQEKLR-P-------LWRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~--------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-~-------~~~~~~~~~~~ii   65 (169)
                      |++.+++|||||+|++.....        .|..........++..+.+|||||..... .       ....+++++|+++
T Consensus         5 liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl   84 (270)
T TIGR00436         5 ILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLIL   84 (270)
T ss_pred             EECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEE
Confidence            678999999999998844332        22221112233466789999999975431 1       1345678999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCce-eEEEEeeeccCCCHHH
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRK-WHIQGTCALKGDGLYE  144 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  144 (169)
                      +|+|+++..+..  ..++..+ ..   .+.|+++|+||+|+.+.....+....+.    ...+ .+++++||++|.|+++
T Consensus        85 ~VvD~~~~~~~~--~~i~~~l-~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~----~~~~~~~v~~iSA~~g~gi~~  154 (270)
T TIGR00436        85 FVVDSDQWNGDG--EFVLTKL-QN---LKRPVVLTRNKLDNKFKDKLLPLIDKYA----ILEDFKDIVPISALTGDNTSF  154 (270)
T ss_pred             EEEECCCCCchH--HHHHHHH-Hh---cCCCEEEEEECeeCCCHHHHHHHHHHHH----hhcCCCceEEEecCCCCCHHH
Confidence            999998876654  2233333 22   3689999999999863211111111111    1111 2689999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030931          145 GLDWLASTLKEMR  157 (169)
Q Consensus       145 ~~~~l~~~~~~~~  157 (169)
                      +++++.+.+.+..
T Consensus       155 L~~~l~~~l~~~~  167 (270)
T TIGR00436       155 LAAFIEVHLPEGP  167 (270)
T ss_pred             HHHHHHHhCCCCC
Confidence            9999998876543

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.85  E-value=1e-20  Score=146.26  Aligned_cols=149  Identities=13%  Similarity=0.026  Sum_probs=101.3

Q ss_pred             ccccCCCCCceeeeecee--------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhH-----------HhhccCCC
Q 030931            2 LRVKQPYCTSCTLVKFYL--------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLW-----------RHYFNNTD   62 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~--------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----------~~~~~~~~   62 (169)
                      +++.+++|||||++++..        ....|.......+..++..+.+|||||+.+.....           ..+++.+|
T Consensus       177 ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad  256 (429)
T TIGR03594       177 IIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERAD  256 (429)
T ss_pred             EECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCC
Confidence            567899999999998732        12233333334556677899999999986544321           24678999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCC
Q 030931           63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK-GAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG  141 (169)
Q Consensus        63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  141 (169)
                      ++++|+|+++..+..... ++..+.+    .+.|+++|+||+|+. +....+++...+.........++++++||++|.|
T Consensus       257 ~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~  331 (429)
T TIGR03594       257 VVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQG  331 (429)
T ss_pred             EEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCC
Confidence            999999998876655532 3333322    368999999999997 2222233333332211122346899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 030931          142 LYEGLDWLASTLKE  155 (169)
Q Consensus       142 i~~~~~~l~~~~~~  155 (169)
                      ++++|+++......
T Consensus       332 v~~l~~~i~~~~~~  345 (429)
T TIGR03594       332 VDKLLDAIDEVYEN  345 (429)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999886654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.85  E-value=9.2e-21  Score=146.48  Aligned_cols=151  Identities=23%  Similarity=0.143  Sum_probs=106.2

Q ss_pred             ccccCCCCCceeeeece-------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCC----chhh---HHhhccCCCEEEEE
Q 030931            2 LRVKQPYCTSCTLVKFY-------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEK----LRPL---WRHYFNNTDGLIYV   67 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~---~~~~~~~~~~ii~v   67 (169)
                      |++.+.+|||||+++++       +.+.+|...+...++.++..+.+||+||...    ...+   ...+++.++++++|
T Consensus       164 LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~V  243 (500)
T PRK12296        164 LVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHV  243 (500)
T ss_pred             EEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEE
Confidence            56789999999999874       3456777777778888889999999999632    1122   22346789999999


Q ss_pred             EECCCh----hhHHHHHHHHHHHhcCC----------CCCCCeEEEEEeCCCCCCCCCHhH-HHhhhCCCCCCCceeEEE
Q 030931           68 VDSLDR----ERIGKAKQEFQAIIKDP----------FMLNSVILVFANKQDMKGAMTPME-VCEGLGLFDLKNRKWHIQ  132 (169)
Q Consensus        68 ~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~piivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~  132 (169)
                      +|+++.    +.+.....+..++....          ...+.|+++|+||+|+.+.....+ +...+     ...+++++
T Consensus       244 VD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~~g~~Vf  318 (500)
T PRK12296        244 VDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EARGWPVF  318 (500)
T ss_pred             ECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HHcCCeEE
Confidence            999753    34444444443432211          234789999999999965422211 11111     22356799


Q ss_pred             EeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          133 GTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       133 ~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      ++||++++|+.+++.++.+.+...+
T Consensus       319 ~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        319 EVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999887754

>cd00880 Era_like Era (E

Probab=99.84  E-value=3.4e-20  Score=124.05  Aligned_cols=146  Identities=18%  Similarity=0.045  Sum_probs=100.4

Q ss_pred             ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEEC-CEEEEEEEcCCCCCchh-------hHHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYK-NVIFTVWDVGGQEKLRP-------LWRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-------~~~~~~~~~~~ii   65 (169)
                      |.+..|+|||||++++....        ..|........... ...+.+||+||......       ....+++.+|+++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il   80 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL   80 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence            56889999999999873321        12223333334443 78899999999876543       3345788999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      +|+|.++........ +.....    ..+.|+++|+||+|+.......+...............+++++||+++.|+.++
T Consensus        81 ~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          81 FVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            999998876665543 333332    247899999999998755433332211111222345668999999999999999


Q ss_pred             HHHHHHH
Q 030931          146 LDWLAST  152 (169)
Q Consensus       146 ~~~l~~~  152 (169)
                      ++++.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9999865

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.84  E-value=2.3e-20  Score=148.32  Aligned_cols=146  Identities=16%  Similarity=0.138  Sum_probs=104.9

Q ss_pred             ccccCCCCCceeeeecee------------eeeee------eeEE----EEEEEE-----CCEEEEEEEcCCCCCchhhH
Q 030931            2 LRVKQPYCTSCTLVKFYL------------LFLLL------VRFN----VEKVQY-----KNVIFTVWDVGGQEKLRPLW   54 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~------------~~~~t------~~~~----~~~~~~-----~~~~~~i~D~~G~~~~~~~~   54 (169)
                      +++..++|||||++++..            .+..+      .|++    ...+.+     ..+.+++|||||+..|...+
T Consensus         8 IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v   87 (595)
T TIGR01393         8 IIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEV   87 (595)
T ss_pred             EECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHH
Confidence            567889999999998722            11111      1322    223433     24899999999999999999


Q ss_pred             HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCCCCCceeEE
Q 030931           55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNRKWHI  131 (169)
Q Consensus        55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~  131 (169)
                      ..+++.||++|+|+|+++..+......|.... +    .+.|+++|+||+|+.+....   .++.+.++..     ..++
T Consensus        88 ~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~-----~~~v  157 (595)
T TIGR01393        88 SRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLD-----ASEA  157 (595)
T ss_pred             HHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC-----cceE
Confidence            99999999999999999876666655554433 2    36799999999998653221   2333333221     1248


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          132 QGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       132 ~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      +++||++|.|+.++|+++.+.+....
T Consensus       158 i~vSAktG~GI~~Lle~I~~~lp~p~  183 (595)
T TIGR01393       158 ILASAKTGIGIEEILEAIVKRVPPPK  183 (595)
T ss_pred             EEeeccCCCCHHHHHHHHHHhCCCCC
Confidence            99999999999999999999876654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.84  E-value=7e-20  Score=139.85  Aligned_cols=148  Identities=24%  Similarity=0.165  Sum_probs=105.0

Q ss_pred             ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEEC-CEEEEEEEcCCCCC----chhhHHhh---ccCCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYK-NVIFTVWDVGGQEK----LRPLWRHY---FNNTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~----~~~~~~~~---~~~~~~ii~   66 (169)
                      |++-+.+|||||+++++.       .+.+|...+...+.+. ...+.+||+||...    ...+...+   ++.++++++
T Consensus       163 lVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~  242 (424)
T PRK12297        163 LVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVH  242 (424)
T ss_pred             EEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEE
Confidence            456899999999998743       3455666666667765 78899999999643    22233333   556999999


Q ss_pred             EEECCCh---hhHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeeccCCC
Q 030931           67 VVDSLDR---ERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDG  141 (169)
Q Consensus        67 v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  141 (169)
                      |+|+++.   ++++....|..++... ....+.|+++|+||+|+..... .+++.+.+.        .+++++||++++|
T Consensus       243 VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--------~~i~~iSA~tgeG  314 (424)
T PRK12297        243 VIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--------PKVFPISALTGQG  314 (424)
T ss_pred             EEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--------CcEEEEeCCCCCC
Confidence            9999764   5666666666665442 2235789999999999853211 112222221        4689999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 030931          142 LYEGLDWLASTLKEMR  157 (169)
Q Consensus       142 i~~~~~~l~~~~~~~~  157 (169)
                      ++++++++.+.+.+.+
T Consensus       315 I~eL~~~L~~~l~~~~  330 (424)
T PRK12297        315 LDELLYAVAELLEETP  330 (424)
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            9999999998887654

>PRK11058 GTPase HflX; Provisional

Probab=99.83  E-value=5.1e-20  Score=141.18  Aligned_cols=143  Identities=15%  Similarity=0.037  Sum_probs=100.3

Q ss_pred             ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEECCE-EEEEEEcCCCCCc--hhhHH------hhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYKNV-IFTVWDVGGQEKL--RPLWR------HYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~--~~~~~------~~~~~~~~ii   65 (169)
                      |.+.+++|||||+|++..       .+++|.......+...+. .+.+|||+|..+.  ...+.      ..++.||+++
T Consensus       202 lVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL  281 (426)
T PRK11058        202 LVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLL  281 (426)
T ss_pred             EECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEE
Confidence            567999999999998743       345666666666766553 8899999998542  22222      2368899999


Q ss_pred             EEEECCChhhHHHHHH---HHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeE-EEEeeeccCCC
Q 030931           66 YVVDSLDRERIGKAKQ---EFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWH-IQGTCALKGDG  141 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~g  141 (169)
                      +|+|++++.+++....   ++..+    ...+.|+++|+||+|+.+... ..+.. ..      .+.+ ++++||++|.|
T Consensus       282 ~VvDaS~~~~~e~l~~v~~iL~el----~~~~~pvIiV~NKiDL~~~~~-~~~~~-~~------~~~~~~v~ISAktG~G  349 (426)
T PRK11058        282 HVVDAADVRVQENIEAVNTVLEEI----DAHEIPTLLVMNKIDMLDDFE-PRIDR-DE------ENKPIRVWLSAQTGAG  349 (426)
T ss_pred             EEEeCCCccHHHHHHHHHHHHHHh----ccCCCCEEEEEEcccCCCchh-HHHHH-Hh------cCCCceEEEeCCCCCC
Confidence            9999999877776543   34333    224789999999999864311 11111 10      1122 58899999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 030931          142 LYEGLDWLASTLKEM  156 (169)
Q Consensus       142 i~~~~~~l~~~~~~~  156 (169)
                      ++++++++...+...
T Consensus       350 IdeL~e~I~~~l~~~  364 (426)
T PRK11058        350 IPLLFQALTERLSGE  364 (426)
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999999988643

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.83  E-value=1.1e-19  Score=121.27  Aligned_cols=144  Identities=19%  Similarity=0.175  Sum_probs=115.4

Q ss_pred             ccccCCCCCceeeeeceeee-----------------eeeeeEEEEEEEEC-CEEEEEEEcCCCCCchhhHHhhccCCCE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF-----------------LLLVRFNVEKVQYK-NVIFTVWDVGGQEKLRPLWRHYFNNTDG   63 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~-----------------~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~   63 (169)
                      +.+-.++|||+++.+.++..                 ..|+..++..+... +..+.+++||||++|+-+|..+++++.+
T Consensus        15 v~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~g   94 (187)
T COG2229          15 VIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVG   94 (187)
T ss_pred             EEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcce
Confidence            34567999999999764333                 25666777777664 4999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHH
Q 030931           64 LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  143 (169)
Q Consensus        64 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  143 (169)
                      +|+++|.+.+..+ .....+..+ ...  ..+|+++++||.|+.++.+++++.+.+....   ...+.++++|.+++|..
T Consensus        95 aivlVDss~~~~~-~a~~ii~f~-~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~---~~~~vi~~~a~e~~~~~  167 (187)
T COG2229          95 AIVLVDSSRPITF-HAEEIIDFL-TSR--NPIPVVVAINKQDLFDALPPEKIREALKLEL---LSVPVIEIDATEGEGAR  167 (187)
T ss_pred             EEEEEecCCCcch-HHHHHHHHH-hhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhcc---CCCceeeeecccchhHH
Confidence            9999999999888 333333333 322  1299999999999999999999888886542   45679999999999999


Q ss_pred             HHHHHHHHH
Q 030931          144 EGLDWLAST  152 (169)
Q Consensus       144 ~~~~~l~~~  152 (169)
                      +.++.+...
T Consensus       168 ~~L~~ll~~  176 (187)
T COG2229         168 DQLDVLLLK  176 (187)
T ss_pred             HHHHHHHhh
Confidence            988888765

>cd01895 EngA2 EngA2 subfamily

Probab=99.83  E-value=1.5e-19  Score=122.96  Aligned_cols=146  Identities=14%  Similarity=0.016  Sum_probs=95.3

Q ss_pred             ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCchh-----------hHHhhccCCC
Q 030931            2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP-----------LWRHYFNNTD   62 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~~~~~~~~   62 (169)
                      +.+.+|+|||||++++....        ..|.......+..++..+.+|||||......           .....++.+|
T Consensus         7 i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d   86 (174)
T cd01895           7 IIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERAD   86 (174)
T ss_pred             EEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcC
Confidence            56789999999999873322        1122222344556778899999999754311           1123567899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCC
Q 030931           63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGD  140 (169)
Q Consensus        63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  140 (169)
                      ++++|+|.+++.+.... .++.....    .+.|+++++||+|+.+.  ...+.+...+..........+++++||+++.
T Consensus        87 ~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (174)
T cd01895          87 VVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQ  161 (174)
T ss_pred             eEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCC
Confidence            99999999887665443 23333221    36899999999998754  2223323333211111123579999999999


Q ss_pred             CHHHHHHHHHHH
Q 030931          141 GLYEGLDWLAST  152 (169)
Q Consensus       141 gi~~~~~~l~~~  152 (169)
                      |+.++++++.+.
T Consensus       162 ~i~~~~~~l~~~  173 (174)
T cd01895         162 GVDKLFDAIDEV  173 (174)
T ss_pred             CHHHHHHHHHHh
Confidence            999999998753

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.83  E-value=9.1e-20  Score=144.43  Aligned_cols=145  Identities=21%  Similarity=0.133  Sum_probs=99.2

Q ss_pred             ccccCCCCCceeeeecee-----e--eeeeeeEEEEEEEECCE-EEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKFYL-----L--FLLLVRFNVEKVQYKNV-IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-----~--~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++..++|||||++++..     .  ...|..+....+.+.+. .+.+||||||+.|..++...++.+|++|+|+|+++.
T Consensus        92 I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dg  171 (587)
T TIGR00487        92 IMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDG  171 (587)
T ss_pred             EECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCC
Confidence            567899999999998722     1  12344444455555433 899999999999999999999999999999998763


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC--C--CceeEEEEeeeccCCCHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL--K--NRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ..-.. ...+...    ...+.|+++++||+|+.+. +.+++...+.....  .  ....+++++||++|+|+.++++++
T Consensus       172 v~~qT-~e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I  245 (587)
T TIGR00487       172 VMPQT-IEAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMI  245 (587)
T ss_pred             CCHhH-HHHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhh
Confidence            21111 1122222    1236899999999999653 33333333221100  1  112579999999999999999998


Q ss_pred             HHH
Q 030931          150 AST  152 (169)
Q Consensus       150 ~~~  152 (169)
                      ...
T Consensus       246 ~~~  248 (587)
T TIGR00487       246 LLQ  248 (587)
T ss_pred             hhh
Confidence            753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.82  E-value=2.5e-20  Score=120.89  Aligned_cols=153  Identities=12%  Similarity=0.160  Sum_probs=118.0

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE----EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK----VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      |++....|||||+-++     .+.+..|.|+++..    +....+.+.|||.+|++++..+.+..++++-+|+|+||++.
T Consensus        25 llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~  104 (205)
T KOG1673|consen   25 LLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTR  104 (205)
T ss_pred             eecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCc
Confidence            5677889999999976     46667788877643    33367889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh--HHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM--EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+++++..|+++..+..  +..-.++||+|.|..-..+++  +....-....++-.+...++||+.+..|+..+|+-+.
T Consensus       105 r~TLnSi~~WY~QAr~~N--ktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vl  182 (205)
T KOG1673|consen  105 RSTLNSIKEWYRQARGLN--KTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVL  182 (205)
T ss_pred             hHHHHHHHHHHHHHhccC--CccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHH
Confidence            999999999999986543  344556789999975333321  1111111112233455699999999999999999999


Q ss_pred             HHHHhh
Q 030931          151 STLKEM  156 (169)
Q Consensus       151 ~~~~~~  156 (169)
                      ..+...
T Consensus       183 AklFnL  188 (205)
T KOG1673|consen  183 AKLFNL  188 (205)
T ss_pred             HHHhCC
Confidence            888775

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.82  E-value=3.6e-20  Score=124.95  Aligned_cols=141  Identities=18%  Similarity=0.099  Sum_probs=91.8

Q ss_pred             CccccCCCCCceeeeeceeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhH----HhhccCCCEEEEEEECCChhhH
Q 030931            1 MLRVKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLW----RHYFNNTDGLIYVVDSLDRERI   76 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----~~~~~~~~~ii~v~d~~~~~~~   76 (169)
                      ++++.+++|||||++++.......  .....+.+...  .+|||||.......+    ...++++|++++|+|+++..++
T Consensus         5 ~~iG~~~~GKstl~~~l~~~~~~~--~~~~~v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~   80 (158)
T PRK15467          5 AFVGAVGAGKTTLFNALQGNYTLA--RKTQAVEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESR   80 (158)
T ss_pred             EEECCCCCCHHHHHHHHcCCCccC--ccceEEEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccc
Confidence            367889999999999875443211  12222233222  379999984333222    2346899999999999887655


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931           77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      .  ..|+..+     ..+.|+++++||+|+.+. ..+.+.+.+...   ....+++++||++|+|++++|+++.+.+.+.
T Consensus        81 ~--~~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~---~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~  149 (158)
T PRK15467         81 L--PAGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLET---GFEEPIFELNSHDPQSVQQLVDYLASLTKQE  149 (158)
T ss_pred             c--CHHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHHc---CCCCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence            2  2344433     136799999999998643 333333322110   1114799999999999999999998877554

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.82  E-value=6.6e-20  Score=145.74  Aligned_cols=135  Identities=17%  Similarity=0.113  Sum_probs=95.3

Q ss_pred             ccCCCCCceeeeeceee-------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhh------HHhhc--cCCCEEEEEE
Q 030931            4 VKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL------WRHYF--NNTDGLIYVV   68 (169)
Q Consensus         4 ~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~~~ii~v~   68 (169)
                      +++++|||||+|++...       +..|+......+..++.++++|||||++.+...      ...++  +++|++++|+
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv   80 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV   80 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence            57899999999988432       223444444566778889999999999887543      33343  3799999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           69 DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        69 d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      |.++.++   ...+..++.+    .+.|+++|+||+|+.+...    .+++.+.        .+.+++++||++|+|+++
T Consensus        81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~--------lg~pvv~tSA~tg~Gi~e  145 (591)
T TIGR00437        81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEER--------LGVPVVPTSATEGRGIER  145 (591)
T ss_pred             cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHH--------cCCCEEEEECCCCCCHHH
Confidence            9987542   2333334432    3689999999999854322    1222222        245699999999999999


Q ss_pred             HHHHHHHHH
Q 030931          145 GLDWLASTL  153 (169)
Q Consensus       145 ~~~~l~~~~  153 (169)
                      +++++.+..
T Consensus       146 L~~~i~~~~  154 (591)
T TIGR00437       146 LKDAIRKAI  154 (591)
T ss_pred             HHHHHHHHh
Confidence            999998754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.82  E-value=1.5e-19  Score=139.95  Aligned_cols=137  Identities=17%  Similarity=0.127  Sum_probs=95.7

Q ss_pred             ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCC--------chhhHHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEK--------LRPLWRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~~~ii   65 (169)
                      |++.+++|||||++++....        ..|.......+.+.+..+.+|||||++.        +......+++.+|+++
T Consensus         6 ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il   85 (435)
T PRK00093          6 IVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVIL   85 (435)
T ss_pred             EECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEE
Confidence            56799999999999873322        2233344556777889999999999987        3333456788999999


Q ss_pred             EEEECCChhhHH--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCcee-EEEEeeeccCCCH
Q 030931           66 YVVDSLDRERIG--KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW-HIQGTCALKGDGL  142 (169)
Q Consensus        66 ~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi  142 (169)
                      +|+|.++..+..  .+..|+..       .+.|+++|+||+|+.+.  .....+...+      ++ .++++||++|.|+
T Consensus        86 ~vvd~~~~~~~~~~~~~~~l~~-------~~~piilv~NK~D~~~~--~~~~~~~~~l------g~~~~~~iSa~~g~gv  150 (435)
T PRK00093         86 FVVDGRAGLTPADEEIAKILRK-------SNKPVILVVNKVDGPDE--EADAYEFYSL------GLGEPYPISAEHGRGI  150 (435)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH-------cCCcEEEEEECccCccc--hhhHHHHHhc------CCCCCEEEEeeCCCCH
Confidence            999997753332  23333332       26899999999997542  1222222111      12 2799999999999


Q ss_pred             HHHHHHHHHHH
Q 030931          143 YEGLDWLASTL  153 (169)
Q Consensus       143 ~~~~~~l~~~~  153 (169)
                      .++++++....
T Consensus       151 ~~l~~~I~~~~  161 (435)
T PRK00093        151 GDLLDAILEEL  161 (435)
T ss_pred             HHHHHHHHhhC
Confidence            99999998733

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.82  E-value=5.2e-21  Score=123.08  Aligned_cols=102  Identities=22%  Similarity=0.255  Sum_probs=75.8

Q ss_pred             ccccCCCCCceeeeeceeeeee-----------eeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLL-----------LVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   70 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~-----------t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~   70 (169)
                      +++..|+|||||+++|.....+           +..............+.+||++|++.+...+...+..+|++++|||+
T Consensus         4 V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~   83 (119)
T PF08477_consen    4 VLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDL   83 (119)
T ss_dssp             EECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEEC
T ss_pred             EECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcC
Confidence            6789999999999988433332           22222333333455699999999998888888889999999999999


Q ss_pred             CChhhHHHHHH---HHHHHhcCCCCCCCeEEEEEeCCC
Q 030931           71 LDRERIGKAKQ---EFQAIIKDPFMLNSVILVFANKQD  105 (169)
Q Consensus        71 ~~~~~~~~~~~---~~~~~~~~~~~~~~piivv~nK~D  105 (169)
                      +++.+++.+.+   |+..+.+.  .++.|+++|+||.|
T Consensus        84 s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D  119 (119)
T PF08477_consen   84 SDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD  119 (119)
T ss_dssp             CGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred             CChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence            99999988754   45555332  24699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.81  E-value=2e-19  Score=139.06  Aligned_cols=141  Identities=18%  Similarity=0.129  Sum_probs=98.5

Q ss_pred             ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCC--------CchhhHHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQE--------KLRPLWRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~~~~ii   65 (169)
                      |++.+++|||||+|++....        ..|.......+.+++..+.+|||||..        .+......+++.+|+++
T Consensus         4 ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl   83 (429)
T TIGR03594         4 IVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVIL   83 (429)
T ss_pred             EECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEE
Confidence            56799999999999884322        223334456677788999999999963        33445666789999999


Q ss_pred             EEEECCChhhHHH--HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHH
Q 030931           66 YVVDSLDRERIGK--AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  143 (169)
Q Consensus        66 ~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  143 (169)
                      +|+|..+..+...  +..|+..       .+.|+++|+||+|+.+......-...++.       -+++++||++|.|+.
T Consensus        84 ~vvD~~~~~~~~d~~i~~~l~~-------~~~piilVvNK~D~~~~~~~~~~~~~lg~-------~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        84 FVVDGREGLTPEDEEIAKWLRK-------SGKPVILVANKIDGKKEDAVAAEFYSLGF-------GEPIPISAEHGRGIG  149 (429)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHH-------hCCCEEEEEECccCCcccccHHHHHhcCC-------CCeEEEeCCcCCChH
Confidence            9999976433332  2333332       26899999999998643221111111211       148999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 030931          144 EGLDWLASTLKEM  156 (169)
Q Consensus       144 ~~~~~l~~~~~~~  156 (169)
                      ++++++...+.+.
T Consensus       150 ~ll~~i~~~l~~~  162 (429)
T TIGR03594       150 DLLDAILELLPEE  162 (429)
T ss_pred             HHHHHHHHhcCcc
Confidence            9999999887553

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.81  E-value=2.1e-19  Score=145.63  Aligned_cols=142  Identities=19%  Similarity=0.108  Sum_probs=101.2

Q ss_pred             ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh-
Q 030931            2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR-   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~-   73 (169)
                      +++..++|||||++++..       ....|..+....+.+.+..+.|||||||+.|..++...++.+|++|+|+|+++. 
T Consensus       295 ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv  374 (787)
T PRK05306        295 IMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGV  374 (787)
T ss_pred             EECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCC
Confidence            567889999999998722       122344444556677789999999999999999999999999999999999873 


Q ss_pred             --hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC-C-CCC--ceeEEEEeeeccCCCHHHHHH
Q 030931           74 --ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF-D-LKN--RKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus        74 --~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~-~~~--~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                        .+.+.+    ...    ...++|+++++||+|+.+. +.+.+...+... . ...  ..++++++||++|.|+.++|+
T Consensus       375 ~~qT~e~i----~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle  445 (787)
T PRK05306        375 MPQTIEAI----NHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLE  445 (787)
T ss_pred             CHhHHHHH----HHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHH
Confidence              233221    122    1236899999999999653 333333322110 0 011  236799999999999999999


Q ss_pred             HHHHH
Q 030931          148 WLAST  152 (169)
Q Consensus       148 ~l~~~  152 (169)
                      ++...
T Consensus       446 ~I~~~  450 (787)
T PRK05306        446 AILLQ  450 (787)
T ss_pred             hhhhh
Confidence            99864

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.81  E-value=1.5e-19  Score=117.08  Aligned_cols=154  Identities=21%  Similarity=0.217  Sum_probs=120.4

Q ss_pred             ccCCCCCceeeeec-------eeeeeeeeeEEE-EEEEE---CCEEEEEEEcCCCCCc-hhhHHhhccCCCEEEEEEECC
Q 030931            4 VKQPYCTSCTLVKF-------YLLFLLLVRFNV-EKVQY---KNVIFTVWDVGGQEKL-RPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         4 ~~~~~~Ktsll~~f-------~~~~~~t~~~~~-~~~~~---~~~~~~i~D~~G~~~~-~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +--+.|||+|+.++       ...+.||+...+ ..++.   ....+.++||.|.... ..+-.+|++-+|++++||+..
T Consensus        16 G~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~   95 (198)
T KOG3883|consen   16 GMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPM   95 (198)
T ss_pred             CCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecCC
Confidence            34578999999986       456678887433 33444   3567999999998877 566788999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ++++|+.+..+..++-+......+|+++++||+|+.++   .++.......|++...+..++++|.+...+.+.|..++.
T Consensus        96 d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p---~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~  172 (198)
T KOG3883|consen   96 DPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP---REVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLAS  172 (198)
T ss_pred             CHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc---hhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHH
Confidence            99999988766666655556678999999999999654   333333444566777788999999999999999999999


Q ss_pred             HHHhhhccc
Q 030931          152 TLKEMRAAG  160 (169)
Q Consensus       152 ~~~~~~~~~  160 (169)
                      .+.+++...
T Consensus       173 rl~~pqskS  181 (198)
T KOG3883|consen  173 RLHQPQSKS  181 (198)
T ss_pred             hccCCcccc
Confidence            988875443

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.81  E-value=5.1e-20  Score=129.07  Aligned_cols=114  Identities=12%  Similarity=0.048  Sum_probs=76.3

Q ss_pred             EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh---
Q 030931           37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM---  113 (169)
Q Consensus        37 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~---  113 (169)
                      ..+.+|||||++.+...+...+..+|++++|+|++++.........+..+ ...  ...|+++|+||+|+.+.....   
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~--~~~~iiivvNK~Dl~~~~~~~~~~  159 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIM--GLKHIIIVQNKIDLVKEEQALENY  159 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHc--CCCcEEEEEEchhccCHHHHHHHH
Confidence            78999999999988888888888999999999998631111111122222 111  235799999999986432211   


Q ss_pred             -HHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931          114 -EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE  155 (169)
Q Consensus       114 -~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  155 (169)
                       ++.+.+..  .....++++++||++|+|++++|+++.+.+.+
T Consensus       160 ~~i~~~~~~--~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         160 EQIKKFVKG--TIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHhc--cccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence             12221110  01224579999999999999999999886654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.81  E-value=1.3e-19  Score=143.89  Aligned_cols=147  Identities=16%  Similarity=0.028  Sum_probs=103.9

Q ss_pred             ccccCCCCCceeeeecee--------e--eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            2 LRVKQPYCTSCTLVKFYL--------L--FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~--------~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +.+..++|||||++++..        +  ...|+.+.+..+..++..+.+||+|||++|.......+.++|++++|+|++
T Consensus         5 iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~   84 (581)
T TIGR00475         5 TAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDAD   84 (581)
T ss_pred             EECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECC
Confidence            456889999999998842        1  234555666667778899999999999999888888899999999999998


Q ss_pred             C---hhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHh----HHHhhhCCCCCCCceeEEEEeeeccCCCHH
Q 030931           72 D---RERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTPM----EVCEGLGLFDLKNRKWHIQGTCALKGDGLY  143 (169)
Q Consensus        72 ~---~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  143 (169)
                      +   +.+++.+    . ++..   .++| +++|+||+|+.+....+    ++.+.+.... ...+++++++||++|.|++
T Consensus        85 ~G~~~qT~ehl----~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~-~~~~~~ii~vSA~tG~GI~  155 (581)
T TIGR00475        85 EGVMTQTGEHL----A-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI-FLKNAKIFKTSAKTGQGIG  155 (581)
T ss_pred             CCCcHHHHHHH----H-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC-CCCCCcEEEEeCCCCCCch
Confidence            7   3333322    2 2221   2566 99999999996532111    1212111000 0114679999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q 030931          144 EGLDWLASTLKEMR  157 (169)
Q Consensus       144 ~~~~~l~~~~~~~~  157 (169)
                      ++++++...+....
T Consensus       156 eL~~~L~~l~~~~~  169 (581)
T TIGR00475       156 ELKKELKNLLESLD  169 (581)
T ss_pred             hHHHHHHHHHHhCC
Confidence            99999987766543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.81  E-value=1.3e-19  Score=120.67  Aligned_cols=133  Identities=21%  Similarity=0.162  Sum_probs=95.4

Q ss_pred             ccccCCCCCceeeeec-------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchh------hHHhhc--cCCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP------LWRHYF--NNTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~~~ii~   66 (169)
                      |.+++.+|||||+|++       .+.+..|+......+..++..+.++|+||......      ....++  ...|++++
T Consensus         5 lvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~   84 (156)
T PF02421_consen    5 LVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIV   84 (156)
T ss_dssp             EEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEE
T ss_pred             EECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEE
Confidence            5679999999999976       44566677777888899999999999999765432      223343  58999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931           67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  142 (169)
Q Consensus        67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  142 (169)
                      |+|+++.++-   ..+..++++    .++|+++++||+|....    .+.+.+.+.++        ++++++||++++|+
T Consensus        85 VvDa~~l~r~---l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg--------~pvi~~sa~~~~g~  149 (156)
T PF02421_consen   85 VVDATNLERN---LYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG--------VPVIPVSARTGEGI  149 (156)
T ss_dssp             EEEGGGHHHH---HHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT--------S-EEEEBTTTTBTH
T ss_pred             ECCCCCHHHH---HHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC--------CCEEEEEeCCCcCH
Confidence            9999875433   334444433    26999999999997432    24556666664        46999999999999


Q ss_pred             HHHHHHH
Q 030931          143 YEGLDWL  149 (169)
Q Consensus       143 ~~~~~~l  149 (169)
                      +++++.+
T Consensus       150 ~~L~~~I  156 (156)
T PF02421_consen  150 DELKDAI  156 (156)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhC
Confidence            9999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.80  E-value=3.8e-19  Score=144.61  Aligned_cols=149  Identities=11%  Similarity=-0.032  Sum_probs=100.9

Q ss_pred             ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEECCEEEEEEEcCCCCC----------chhhH-HhhccCCC
Q 030931            2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYKNVIFTVWDVGGQEK----------LRPLW-RHYFNNTD   62 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~-~~~~~~~~   62 (169)
                      +++.+++|||||++++...        ...|.......+.+++..+.+|||||..+          +..+. ..+++.+|
T Consensus       455 ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~ad  534 (712)
T PRK09518        455 LVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSE  534 (712)
T ss_pred             EECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCC
Confidence            5789999999999987322        22233333345666788899999999642          11111 23478999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931           63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  142 (169)
Q Consensus        63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  142 (169)
                      ++++|+|+++..++.... ++..+.+    .+.|+++|+||+|+.+....+.+...+..........+++++||++|.|+
T Consensus       535 vvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv  609 (712)
T PRK09518        535 LALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHT  609 (712)
T ss_pred             EEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCH
Confidence            999999999887777654 3334332    36899999999999654332333322221111122346799999999999


Q ss_pred             HHHHHHHHHHHHh
Q 030931          143 YEGLDWLASTLKE  155 (169)
Q Consensus       143 ~~~~~~l~~~~~~  155 (169)
                      +++++.+.+...+
T Consensus       610 ~~L~~~i~~~~~~  622 (712)
T PRK09518        610 NRLAPAMQEALES  622 (712)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987765

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.80  E-value=1e-18  Score=135.36  Aligned_cols=149  Identities=13%  Similarity=0.019  Sum_probs=99.7

Q ss_pred             ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhh-----------HHhhccCCC
Q 030931            2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL-----------WRHYFNNTD   62 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~~~~~~~~   62 (169)
                      +++.+++|||||++++...        ...|.......+...+..+.+|||||..+....           ...+++.+|
T Consensus       178 ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad  257 (435)
T PRK00093        178 IIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERAD  257 (435)
T ss_pred             EECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCC
Confidence            5679999999999987321        122322233445567888999999997543221           123678999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931           63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  142 (169)
Q Consensus        63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  142 (169)
                      ++++|+|+++..+..... ++..+.+    .+.|+++++||+|+.+.....++.+.+..........+++++||++|.|+
T Consensus       258 ~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv  332 (435)
T PRK00093        258 VVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGV  332 (435)
T ss_pred             EEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCH
Confidence            999999998876655432 3333322    36899999999998743223333333322211223467999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 030931          143 YEGLDWLASTLKE  155 (169)
Q Consensus       143 ~~~~~~l~~~~~~  155 (169)
                      +++++.+.+...+
T Consensus       333 ~~l~~~i~~~~~~  345 (435)
T PRK00093        333 DKLLEAIDEAYEN  345 (435)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998875543

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.80  E-value=5e-19  Score=140.91  Aligned_cols=146  Identities=16%  Similarity=0.158  Sum_probs=103.8

Q ss_pred             ccccCCCCCceeeeeceee----------------------eeeeeeEEEEEEEE-----CCEEEEEEEcCCCCCchhhH
Q 030931            2 LRVKQPYCTSCTLVKFYLL----------------------FLLLVRFNVEKVQY-----KNVIFTVWDVGGQEKLRPLW   54 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~----------------------~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~   54 (169)
                      +++-.++|||||+.++-..                      ...|+......+.+     ..+.+++|||||+..|...+
T Consensus        12 IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~~~v   91 (600)
T PRK05433         12 IIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEV   91 (600)
T ss_pred             EECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHHHHH
Confidence            4567899999999987211                      01122222233433     36899999999999999999


Q ss_pred             HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCCCCCceeEE
Q 030931           55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNRKWHI  131 (169)
Q Consensus        55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~  131 (169)
                      ..+++.+|++|+|+|+++.........|.... .    .++|+++|+||+|+.+....   .++.+.++..     ...+
T Consensus        92 ~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~-----~~~v  161 (600)
T PRK05433         92 SRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAADPERVKQEIEDVIGID-----ASDA  161 (600)
T ss_pred             HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC-----cceE
Confidence            99999999999999998865555444444322 1    36899999999998654221   2333333221     1248


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          132 QGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       132 ~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      +++||++|.|+.++++++.+.+..+.
T Consensus       162 i~iSAktG~GI~~Ll~~I~~~lp~P~  187 (600)
T PRK05433        162 VLVSAKTGIGIEEVLEAIVERIPPPK  187 (600)
T ss_pred             EEEecCCCCCHHHHHHHHHHhCcccc
Confidence            99999999999999999999887654

>cd04163 Era Era subfamily

Probab=99.79  E-value=7.5e-19  Score=118.59  Aligned_cols=143  Identities=16%  Similarity=0.097  Sum_probs=92.5

Q ss_pred             ccccCCCCCceeeeeceeeee--------eeeeEEEEEEEECCEEEEEEEcCCCCCchh--------hHHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLFL--------LLVRFNVEKVQYKNVIFTVWDVGGQEKLRP--------LWRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~--------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~~~ii   65 (169)
                      +.+.+|+|||||++++.....        .+.......+..++..+.+|||||......        .....+..+|+++
T Consensus         8 ~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~   87 (168)
T cd04163           8 IVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVL   87 (168)
T ss_pred             EECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEE
Confidence            567999999999998733221        111122223444678999999999765432        2344578899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG-AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      +|+|+++..  .....++...+..   .+.|+++++||+|+.. .....+....+..   .....+++++|++++.|+++
T Consensus        88 ~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~~~  159 (168)
T cd04163          88 FVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE---LGPFAEIFPISALKGENVDE  159 (168)
T ss_pred             EEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh---ccCCCceEEEEeccCCChHH
Confidence            999998762  2222222222221   2589999999999863 2222222222211   11234689999999999999


Q ss_pred             HHHHHHHH
Q 030931          145 GLDWLAST  152 (169)
Q Consensus       145 ~~~~l~~~  152 (169)
                      +++++.+.
T Consensus       160 l~~~l~~~  167 (168)
T cd04163         160 LLEEIVKY  167 (168)
T ss_pred             HHHHHHhh
Confidence            99999764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.79  E-value=8.9e-19  Score=133.03  Aligned_cols=154  Identities=15%  Similarity=0.025  Sum_probs=105.4

Q ss_pred             ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEECC-EEEEEEEcCCCCCch-------hhHHhhccCCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYKN-VIFTVWDVGGQEKLR-------PLWRHYFNNTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~-------~~~~~~~~~~~~ii~   66 (169)
                      |++.+.+|||||+|++..       .+.+|.......+.... ..+.++||||...-.       ......++.++++++
T Consensus       164 lVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~  243 (390)
T PRK12298        164 LLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLH  243 (390)
T ss_pred             EEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEE
Confidence            467899999999998743       34556666666676654 569999999975321       112235788999999


Q ss_pred             EEECC---ChhhHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931           67 VVDSL---DRERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  142 (169)
Q Consensus        67 v~d~~---~~~~~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  142 (169)
                      |+|++   +.+.++....|+.++... ....+.|+++|+||+|+.+.....+....+...  .....+++++||+++.|+
T Consensus       244 VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~--~~~~~~Vi~ISA~tg~GI  321 (390)
T PRK12298        244 LIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA--LGWEGPVYLISAASGLGV  321 (390)
T ss_pred             EeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH--hCCCCCEEEEECCCCcCH
Confidence            99998   455666666777666542 223468999999999986432222222221100  001124899999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 030931          143 YEGLDWLASTLKEMR  157 (169)
Q Consensus       143 ~~~~~~l~~~~~~~~  157 (169)
                      +++++++...+.+..
T Consensus       322 deLl~~I~~~L~~~~  336 (390)
T PRK12298        322 KELCWDLMTFIEENP  336 (390)
T ss_pred             HHHHHHHHHHhhhCc
Confidence            999999999887653

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.79  E-value=5.2e-19  Score=142.36  Aligned_cols=146  Identities=17%  Similarity=0.122  Sum_probs=99.5

Q ss_pred             ccccCCCCCceeeeeceee-------eeeeeeEEEEEE--EE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931            2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKV--QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   70 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~   70 (169)
                      +++-.++|||||++++...       ...|..+....+  ..  .+..+.+||||||+.|..++..+++.+|++|+|+|+
T Consensus       249 IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA  328 (742)
T CHL00189        249 ILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAA  328 (742)
T ss_pred             EECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEEC
Confidence            5678899999999987322       123333223333  22  468999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCC--CC--CceeEEEEeeeccCCCHHHHH
Q 030931           71 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD--LK--NRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      ++........ .+..+ .   ..++|+++++||+|+.+. ...++...+....  ..  ...++++++||++|.|+.+++
T Consensus       329 ~dGv~~QT~E-~I~~~-k---~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLl  402 (742)
T CHL00189        329 DDGVKPQTIE-AINYI-Q---AANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLL  402 (742)
T ss_pred             cCCCChhhHH-HHHHH-H---hcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHH
Confidence            7742222111 12222 1   246899999999999753 2333333321110  01  123679999999999999999


Q ss_pred             HHHHHHH
Q 030931          147 DWLASTL  153 (169)
Q Consensus       147 ~~l~~~~  153 (169)
                      +++....
T Consensus       403 e~I~~l~  409 (742)
T CHL00189        403 ETILLLA  409 (742)
T ss_pred             Hhhhhhh
Confidence            9998764

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.79  E-value=1.1e-18  Score=141.98  Aligned_cols=142  Identities=15%  Similarity=0.098  Sum_probs=94.5

Q ss_pred             ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCC--------chhhHHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEK--------LRPLWRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~~~ii   65 (169)
                      +++.+++|||||++++....        ..|.........+++..+.+|||||.+.        +......+++.+|+++
T Consensus       280 IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL  359 (712)
T PRK09518        280 IVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVV  359 (712)
T ss_pred             EECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEE
Confidence            56799999999999884321        1222223334556788999999999764        2334556789999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      +|+|.++...... ..|...+ +.   .+.|+++|+||+|+....  ....+.....    .+ ..+++||++|.|+.++
T Consensus       360 ~VvDa~~~~~~~d-~~i~~~L-r~---~~~pvIlV~NK~D~~~~~--~~~~~~~~lg----~~-~~~~iSA~~g~GI~eL  427 (712)
T PRK09518        360 FVVDGQVGLTSTD-ERIVRML-RR---AGKPVVLAVNKIDDQASE--YDAAEFWKLG----LG-EPYPISAMHGRGVGDL  427 (712)
T ss_pred             EEEECCCCCCHHH-HHHHHHH-Hh---cCCCEEEEEECcccccch--hhHHHHHHcC----CC-CeEEEECCCCCCchHH
Confidence            9999976322111 1233333 22   478999999999985431  1112211111    01 2578999999999999


Q ss_pred             HHHHHHHHHh
Q 030931          146 LDWLASTLKE  155 (169)
Q Consensus       146 ~~~l~~~~~~  155 (169)
                      +++++..+.+
T Consensus       428 l~~i~~~l~~  437 (712)
T PRK09518        428 LDEALDSLKV  437 (712)
T ss_pred             HHHHHHhccc
Confidence            9999998765

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.79  E-value=1.3e-18  Score=124.15  Aligned_cols=142  Identities=19%  Similarity=0.080  Sum_probs=96.3

Q ss_pred             ccccCCCCCceeeeeceeee-------eeeeeEEEEEEEECCEEEEEEEcCCCCCch-------hhHHhhccCCCEEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF-------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLR-------PLWRHYFNNTDGLIYV   67 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~~ii~v   67 (169)
                      |++.+++|||||++++....       .+|.......+.+++..+++||+||+....       .....+++.+|++++|
T Consensus         5 lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V   84 (233)
T cd01896           5 LVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMV   84 (233)
T ss_pred             EECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEE
Confidence            56789999999999884332       345555556677789999999999975432       2334578999999999


Q ss_pred             EECCChhh-HHHHHHHHH----------------------------------------HHhcC-----------------
Q 030931           68 VDSLDRER-IGKAKQEFQ----------------------------------------AIIKD-----------------   89 (169)
Q Consensus        68 ~d~~~~~~-~~~~~~~~~----------------------------------------~~~~~-----------------   89 (169)
                      +|++++.. ...+...+.                                        .++++                 
T Consensus        85 ~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~  164 (233)
T cd01896          85 LDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVD  164 (233)
T ss_pred             ecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHH
Confidence            99987542 222222221                                        11110                 


Q ss_pred             -------CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931           90 -------PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus        90 -------~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                             .....+|+++|+||+|+.+.   ++... +.    .  ..+++++||+++.|++++|+.+.+.+
T Consensus       165 ~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~~-~~----~--~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         165 DLIDVIEGNRVYIPCLYVYNKIDLISI---EELDL-LA----R--QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             HHHHHHhCCceEeeEEEEEECccCCCH---HHHHH-Hh----c--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                   11234799999999998533   33332 21    1  12489999999999999999998755

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK00089 era GTPase Era; Reviewed

Probab=99.78  E-value=1.5e-18  Score=127.92  Aligned_cols=148  Identities=21%  Similarity=0.188  Sum_probs=95.6

Q ss_pred             ccccCCCCCceeeeeceeeeeeee-------eEEEEE-EEECCEEEEEEEcCCCCCch--------hhHHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLV-------RFNVEK-VQYKNVIFTVWDVGGQEKLR--------PLWRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~-------~~~~~~-~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~~~~ii   65 (169)
                      |++.+|+|||||+|++.....+.+       ...... ...++..+.+|||||.....        ......+..+|+++
T Consensus        10 iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il   89 (292)
T PRK00089         10 IVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVL   89 (292)
T ss_pred             EECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEE
Confidence            678999999999998743322111       111122 23356899999999975432        22334678999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      +|+|+++..  .....++...+..   .+.|+++|+||+|+... ....+..+.+..   .....+++++||+++.|+++
T Consensus        90 ~vvd~~~~~--~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~---~~~~~~i~~iSA~~~~gv~~  161 (292)
T PRK00089         90 FVVDADEKI--GPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE---LMDFAEIVPISALKGDNVDE  161 (292)
T ss_pred             EEEeCCCCC--ChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh---hCCCCeEEEecCCCCCCHHH
Confidence            999998732  2222333333331   36899999999999632 122222222221   11134699999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030931          145 GLDWLASTLKEMR  157 (169)
Q Consensus       145 ~~~~l~~~~~~~~  157 (169)
                      +++++.+.+.+..
T Consensus       162 L~~~L~~~l~~~~  174 (292)
T PRK00089        162 LLDVIAKYLPEGP  174 (292)
T ss_pred             HHHHHHHhCCCCC
Confidence            9999999876543

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.78  E-value=2.4e-18  Score=123.00  Aligned_cols=148  Identities=19%  Similarity=0.190  Sum_probs=104.2

Q ss_pred             ccccCCCCCceeeeecee-------------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931            2 LRVKQPYCTSCTLVKFYL-------------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH   56 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   56 (169)
                      +++..++|||||++++..                         ....|+......+.++++++++|||||+..|...+..
T Consensus         4 i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~   83 (237)
T cd04168           4 ILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVER   83 (237)
T ss_pred             EEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHH
Confidence            567899999999997611                         1111233445667889999999999999999999999


Q ss_pred             hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCC------------
Q 030931           57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGL------------  121 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~------------  121 (169)
                      +++.+|++++|+|.++.... ....++..+.+    .++|+++++||+|+..+..   .+++.+.++.            
T Consensus        84 ~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~  158 (237)
T cd04168          84 SLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAP  158 (237)
T ss_pred             HHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEee
Confidence            99999999999999875433 23344444322    3689999999999864210   0111111110            


Q ss_pred             ------------------------------C--------------CCCCceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931          122 ------------------------------F--------------DLKNRKWHIQGTCALKGDGLYEGLDWLASTLK  154 (169)
Q Consensus       122 ------------------------------~--------------~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  154 (169)
                                                    .              .....-+|++..||.++.|+..+++.+.+.++
T Consensus       159 ~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p  235 (237)
T cd04168         159 NICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP  235 (237)
T ss_pred             eeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence                                          0              01223468899999999999999999998764

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.78  E-value=1.1e-18  Score=120.89  Aligned_cols=148  Identities=20%  Similarity=0.150  Sum_probs=103.0

Q ss_pred             ccccCCCCCceeeeece-------------------------eeeeeeeeEEEEEEE--ECCEEEEEEEcCCCCCchhhH
Q 030931            2 LRVKQPYCTSCTLVKFY-------------------------LLFLLLVRFNVEKVQ--YKNVIFTVWDVGGQEKLRPLW   54 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-------------------------~~~~~t~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~   54 (169)
                      +++..++|||||+.++.                         ....-|+......+.  ...+.+.++||||+..|....
T Consensus         8 i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~   87 (188)
T PF00009_consen    8 IIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDFIKEM   87 (188)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHH
T ss_pred             EECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccceeecc
Confidence            46788999999999651                         112334445667777  889999999999999998888


Q ss_pred             HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhh-CCCCCCC-cee
Q 030931           55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGL-GLFDLKN-RKW  129 (169)
Q Consensus        55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~-~~~~~~~-~~~  129 (169)
                      ...++.+|++|+|+|+.+..... ....+..+..    .+.|+++|+||+|+....-   .+++...+ ....... ..+
T Consensus        88 ~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  162 (188)
T PF00009_consen   88 IRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE----LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIV  162 (188)
T ss_dssp             HHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH----TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTE
T ss_pred             cceecccccceeeeecccccccc-cccccccccc----cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccc
Confidence            88899999999999997653322 2333333322    3688999999999872111   12222122 0011122 357


Q ss_pred             EEEEeeeccCCCHHHHHHHHHHHHH
Q 030931          130 HIQGTCALKGDGLYEGLDWLASTLK  154 (169)
Q Consensus       130 ~~~~~Sa~~~~gi~~~~~~l~~~~~  154 (169)
                      +++++||.+|.|+.++++.+.+.++
T Consensus       163 ~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  163 PVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             EEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             eEEEEecCCCCCHHHHHHHHHHhCc
Confidence            8999999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK10218 GTP-binding protein; Provisional

Probab=99.77  E-value=4.2e-18  Score=135.30  Aligned_cols=151  Identities=13%  Similarity=0.076  Sum_probs=106.3

Q ss_pred             ccccCCCCCceeeeecee-------e----------------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931            2 LRVKQPYCTSCTLVKFYL-------L----------------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF   58 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------~----------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   58 (169)
                      +++-.++|||||+.++..       .                ...|+......+.++++++++|||||+..|...+..++
T Consensus        10 IiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l   89 (607)
T PRK10218         10 IIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVM   89 (607)
T ss_pred             EECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHH
Confidence            466889999999998721       1                11222233445677899999999999999999999999


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCC-CCC-CCceeEEEE
Q 030931           59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGL-FDL-KNRKWHIQG  133 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~-~~~-~~~~~~~~~  133 (169)
                      +.+|++++|+|+++.... ....++.....    .++|.++++||+|+.++...   .++.+.+.. ... ....++++.
T Consensus        90 ~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~  164 (607)
T PRK10218         90 SMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVY  164 (607)
T ss_pred             HhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEE
Confidence            999999999999764322 23333333332    36889999999999765432   233333211 111 224578999


Q ss_pred             eeeccCC----------CHHHHHHHHHHHHHhhh
Q 030931          134 TCALKGD----------GLYEGLDWLASTLKEMR  157 (169)
Q Consensus       134 ~Sa~~~~----------gi~~~~~~l~~~~~~~~  157 (169)
                      +||++|.          |+..+++.++..++.+.
T Consensus       165 ~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~  198 (607)
T PRK10218        165 ASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD  198 (607)
T ss_pred             eEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence            9999998          58899998888877653

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.77  E-value=1.3e-18  Score=121.18  Aligned_cols=147  Identities=16%  Similarity=0.075  Sum_probs=90.7

Q ss_pred             ccccCCCCCceeeeecee-----eeeeeeeEEE--EEEEECCEEEEEEEcCCCC----------CchhhHHhhccCC---
Q 030931            2 LRVKQPYCTSCTLVKFYL-----LFLLLVRFNV--EKVQYKNVIFTVWDVGGQE----------KLRPLWRHYFNNT---   61 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-----~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~~~---   61 (169)
                      |++.+|+|||||++++..     .+.++.+.+.  .... -+..+.+|||||..          .+..+...+++.+   
T Consensus        29 ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (196)
T PRK00454         29 FAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE-VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENL  107 (196)
T ss_pred             EEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe-cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccc
Confidence            678999999999998743     2233433211  1112 24789999999953          2333444555544   


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCC
Q 030931           62 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG  141 (169)
Q Consensus        62 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  141 (169)
                      +++++|+|.+++.+...  .++...++.   .+.|+++++||+|+.+....+.....+. ........+++++||++++|
T Consensus       108 ~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~-~~l~~~~~~~~~~Sa~~~~g  181 (196)
T PRK00454        108 KGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVR-KALKFGDDEVILFSSLKKQG  181 (196)
T ss_pred             eEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHH-HHHHhcCCceEEEEcCCCCC
Confidence            67888899876543322  122222221   3689999999999864322222221111 01111245689999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 030931          142 LYEGLDWLASTLKE  155 (169)
Q Consensus       142 i~~~~~~l~~~~~~  155 (169)
                      ++++++.+...+.+
T Consensus       182 i~~l~~~i~~~~~~  195 (196)
T PRK00454        182 IDELRAAIAKWLAE  195 (196)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999887654

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.77  E-value=2.2e-18  Score=136.95  Aligned_cols=151  Identities=12%  Similarity=0.116  Sum_probs=110.3

Q ss_pred             ccccCCCCCceeeeece-------ee----------------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931            2 LRVKQPYCTSCTLVKFY-------LL----------------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF   58 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-------~~----------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   58 (169)
                      +++-.++|||||+.++-       ..                ...|+......+.+.++++++||||||..|...+..++
T Consensus         6 IiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l   85 (594)
T TIGR01394         6 IIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVL   85 (594)
T ss_pred             EEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHH
Confidence            45678999999999761       11                12344455566888999999999999999999999999


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCCC--CCceeEEEE
Q 030931           59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDL--KNRKWHIQG  133 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~--~~~~~~~~~  133 (169)
                      +.+|++++|+|+++. .......|+..+..    .++|+++|+||+|+.+....   .++.+.+.....  +...+++++
T Consensus        86 ~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~  160 (594)
T TIGR01394        86 GMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVY  160 (594)
T ss_pred             HhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEe
Confidence            999999999999763 34555666666643    36899999999998654321   222222211001  233578999


Q ss_pred             eeeccCC----------CHHHHHHHHHHHHHhhh
Q 030931          134 TCALKGD----------GLYEGLDWLASTLKEMR  157 (169)
Q Consensus       134 ~Sa~~~~----------gi~~~~~~l~~~~~~~~  157 (169)
                      +||++|.          |+..+|+.++..+....
T Consensus       161 ~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~  194 (594)
T TIGR01394       161 ASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK  194 (594)
T ss_pred             chhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence            9999996          79999999998887654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.76  E-value=3.4e-18  Score=135.43  Aligned_cols=145  Identities=17%  Similarity=0.064  Sum_probs=96.4

Q ss_pred             ccccCCCCCceeeeeceee---------eeeeeeEEEEEEEEC----------------CEEEEEEEcCCCCCchhhHHh
Q 030931            2 LRVKQPYCTSCTLVKFYLL---------FLLLVRFNVEKVQYK----------------NVIFTVWDVGGQEKLRPLWRH   56 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~---------~~~t~~~~~~~~~~~----------------~~~~~i~D~~G~~~~~~~~~~   56 (169)
                      +++..++|||||++++...         ..+++|..+...+..                ...+.+||||||+.|..++..
T Consensus         9 IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~   88 (590)
T TIGR00491         9 VLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKR   88 (590)
T ss_pred             EECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHHHHH
Confidence            5678999999999987321         233444443332211                123889999999999999999


Q ss_pred             hccCCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHH---
Q 030931           57 YFNNTDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--------------TPMEVC---  116 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--------------~~~~~~---  116 (169)
                      +++.+|++++|+|+++   +.+++.+.    .+ +.   .+.|+++++||+|+.+..              ....+.   
T Consensus        89 ~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l-~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~  160 (590)
T TIGR00491        89 GGALADLAILIVDINEGFKPQTQEALN----IL-RM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNL  160 (590)
T ss_pred             HHhhCCEEEEEEECCcCCCHhHHHHHH----HH-HH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHH
Confidence            9999999999999986   44444332    11 11   368999999999986311              011110   


Q ss_pred             -----------hhhCCCCC-------CCceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931          117 -----------EGLGLFDL-------KNRKWHIQGTCALKGDGLYEGLDWLASTLK  154 (169)
Q Consensus       117 -----------~~~~~~~~-------~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  154 (169)
                                 ...++...       -....+++++||++|+|+++++.++.....
T Consensus       161 ~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       161 DTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             HHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence                       11111100       112468999999999999999998875443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=5.6e-19  Score=115.80  Aligned_cols=149  Identities=26%  Similarity=0.423  Sum_probs=125.4

Q ss_pred             ccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHH
Q 030931            4 VKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKA   79 (169)
Q Consensus         4 ~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~   79 (169)
                      +=+..|||||++.+    -.+..||...+...+..++++++.+|.+||..-+..|..|+-.++++++.+|+-|.++|.+.
T Consensus        27 GLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es  106 (193)
T KOG0077|consen   27 GLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAES  106 (193)
T ss_pred             eecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHH
Confidence            45789999999976    35778999998899999999999999999998889999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC------------CCCCceeEEEEeeeccCCCHHHHHH
Q 030931           80 KQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus        80 ~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                      +..++.++........|+++.+||+|.+.+.+.++....+++.            ....+....+-||...+.|-.+.|.
T Consensus       107 ~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fk  186 (193)
T KOG0077|consen  107 KKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFK  186 (193)
T ss_pred             HHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeee
Confidence            9999998887777899999999999998877655544433321            1123456789999999999889888


Q ss_pred             HHHHH
Q 030931          148 WLAST  152 (169)
Q Consensus       148 ~l~~~  152 (169)
                      |+...
T Consensus       187 wl~qy  191 (193)
T KOG0077|consen  187 WLSQY  191 (193)
T ss_pred             ehhhh
Confidence            87654

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.75  E-value=9.8e-18  Score=136.47  Aligned_cols=142  Identities=16%  Similarity=0.070  Sum_probs=98.3

Q ss_pred             ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhh----------HHhhc--cCCC
Q 030931            2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL----------WRHYF--NNTD   62 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~~~--~~~~   62 (169)
                      |.+++++|||||+|++..       ....|+......+..++.++++|||||++.+...          ...++  ..+|
T Consensus         8 LvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD   87 (772)
T PRK09554          8 LIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDAD   87 (772)
T ss_pred             EECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCC
Confidence            567999999999998733       2334554555567778899999999999876431          22333  4899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931           63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  142 (169)
Q Consensus        63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  142 (169)
                      ++++|+|.++.++-   ..+..++.+    .+.|+++++||+|+.+........+.+.    +..+++++++||++|+|+
T Consensus        88 ~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~----~~LG~pVvpiSA~~g~GI  156 (772)
T PRK09554         88 LLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS----ARLGCPVIPLVSTRGRGI  156 (772)
T ss_pred             EEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH----HHhCCCEEEEEeecCCCH
Confidence            99999999886543   234444432    3689999999999864322111111111    223457999999999999


Q ss_pred             HHHHHHHHHHHH
Q 030931          143 YEGLDWLASTLK  154 (169)
Q Consensus       143 ~~~~~~l~~~~~  154 (169)
                      +++.+.+.+...
T Consensus       157 deL~~~I~~~~~  168 (772)
T PRK09554        157 EALKLAIDRHQA  168 (772)
T ss_pred             HHHHHHHHHhhh
Confidence            999999887653

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.75  E-value=2.8e-18  Score=132.48  Aligned_cols=143  Identities=15%  Similarity=0.017  Sum_probs=93.4

Q ss_pred             ccccCCCCCceeeeece-------e-------------------------------eeeeeeeEEEEEEEECCEEEEEEE
Q 030931            2 LRVKQPYCTSCTLVKFY-------L-------------------------------LFLLLVRFNVEKVQYKNVIFTVWD   43 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-------~-------------------------------~~~~t~~~~~~~~~~~~~~~~i~D   43 (169)
                      +++..++|||||+.++.       +                               ....|+......+..+++.+.+||
T Consensus        12 i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i~iiD   91 (426)
T TIGR00483        12 FIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEVTIVD   91 (426)
T ss_pred             EEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEEEEEE
Confidence            46688999999999761       1                               113445555666777899999999


Q ss_pred             cCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------HhHHH
Q 030931           44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMT------PMEVC  116 (169)
Q Consensus        44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~------~~~~~  116 (169)
                      ||||+.|.......++.+|++++|+|+++.+.+.... .+...+.+..  ...|+++++||+|+.+...      ..++.
T Consensus        92 tpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~  169 (426)
T TIGR00483        92 CPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEFEAIKKEVS  169 (426)
T ss_pred             CCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHHHHHHHHHH
Confidence            9999988776666788999999999998864321111 1111122211  2458999999999964211      11222


Q ss_pred             hhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931          117 EGLGLFDLKNRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      +.+.........++++++||++|.|+.+.+
T Consensus       170 ~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       170 NLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHcCCCcccceEEEeeccccccccccc
Confidence            222111112234689999999999998643

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.74  E-value=4.4e-18  Score=128.16  Aligned_cols=141  Identities=17%  Similarity=0.108  Sum_probs=100.2

Q ss_pred             ccccCCCCCceeeeec--------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCch---------hhHHhhccCCCEE
Q 030931            2 LRVKQPYCTSCTLVKF--------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLR---------PLWRHYFNNTDGL   64 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f--------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~~~~i   64 (169)
                      |.+.+.+|||||+||+        .+.+..|-...+....+.+..+.+.||+|-+...         .+....+..||++
T Consensus         8 IVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvi   87 (444)
T COG1160           8 IVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVI   87 (444)
T ss_pred             EECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEE
Confidence            4679999999999987        3455555556778888999999999999976422         2344567899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      |||+|....-+  ...+.+.++++.   .++|+++|+||+|..+......-...+++.       +++.+||.+|.|+.+
T Consensus        88 lfvVD~~~Git--~~D~~ia~~Lr~---~~kpviLvvNK~D~~~~e~~~~efyslG~g-------~~~~ISA~Hg~Gi~d  155 (444)
T COG1160          88 LFVVDGREGIT--PADEEIAKILRR---SKKPVILVVNKIDNLKAEELAYEFYSLGFG-------EPVPISAEHGRGIGD  155 (444)
T ss_pred             EEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEEcccCchhhhhHHHHHhcCCC-------CceEeehhhccCHHH
Confidence            99999965222  222233334331   368999999999976332211111222222       389999999999999


Q ss_pred             HHHHHHHHHH
Q 030931          145 GLDWLASTLK  154 (169)
Q Consensus       145 ~~~~l~~~~~  154 (169)
                      +++++...+.
T Consensus       156 Lld~v~~~l~  165 (444)
T COG1160         156 LLDAVLELLP  165 (444)
T ss_pred             HHHHHHhhcC
Confidence            9999999873

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.74  E-value=6.7e-18  Score=130.38  Aligned_cols=143  Identities=15%  Similarity=0.085  Sum_probs=93.5

Q ss_pred             ccccCCCCCceeeeece-------e-------------------------------eeeeeeeEEEEEEEECCEEEEEEE
Q 030931            2 LRVKQPYCTSCTLVKFY-------L-------------------------------LFLLLVRFNVEKVQYKNVIFTVWD   43 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-------~-------------------------------~~~~t~~~~~~~~~~~~~~~~i~D   43 (169)
                      +++..++|||||++++.       .                               ....|+...+..++.+++.+.+||
T Consensus        11 iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i~liD   90 (425)
T PRK12317         11 VIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYFTIVD   90 (425)
T ss_pred             EECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEEEEEE
Confidence            46788999999999761       0                               234455566667778899999999


Q ss_pred             cCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------HhHHHh
Q 030931           44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT------PMEVCE  117 (169)
Q Consensus        44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~------~~~~~~  117 (169)
                      |||++.|.......++.+|++++|+|+++...+.....+...++...  ...|+++++||+|+.+...      .+++.+
T Consensus        91 tpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~  168 (425)
T PRK12317         91 CPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEEVKEEVSK  168 (425)
T ss_pred             CCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHHHHHHHHH
Confidence            99999887665566789999999999986322211111111222211  2357999999999965211      122222


Q ss_pred             hhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931          118 GLGLFDLKNRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus       118 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      .+.........++++++||++|+|+.+..
T Consensus       169 ~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        169 LLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHhhCCCcCcceEEEeecccCCCccccc
Confidence            22211112224679999999999998744

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.73  E-value=1.1e-19  Score=121.32  Aligned_cols=150  Identities=15%  Similarity=0.179  Sum_probs=117.5

Q ss_pred             cccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE---CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            3 RVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         3 ~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      .+.-|.||||+++|+     +..|..|+|+.+.  .+.+   .-+++++||++||++|..|...|++.+++..+|||+++
T Consensus        31 ig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~  110 (229)
T KOG4423|consen   31 IGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTR  110 (229)
T ss_pred             eeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccc
Confidence            456799999999974     7889999997653  3444   45789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcC---CCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCCCCCce-eEEEEeeeccCCCHHHH
Q 030931           73 RERIGKAKQEFQAIIKD---PFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDLKNRK-WHIQGTCALKGDGLYEG  145 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~---~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~  145 (169)
                      ..+|+.+..|.+++...   ......|+++..||||......   .+.+.+ +.    +..+ ..++++|++.+.|+.|.
T Consensus       111 s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~-f~----kengf~gwtets~Kenkni~Ea  185 (229)
T KOG4423|consen  111 SLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDN-FK----KENGFEGWTETSAKENKNIPEA  185 (229)
T ss_pred             cccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHH-HH----hccCccceeeeccccccChhHH
Confidence            99999999999988543   2333589999999999854211   122222 21    1222 24999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030931          146 LDWLASTLKEMR  157 (169)
Q Consensus       146 ~~~l~~~~~~~~  157 (169)
                      ...+++.+.-..
T Consensus       186 ~r~lVe~~lvnd  197 (229)
T KOG4423|consen  186 QRELVEKILVND  197 (229)
T ss_pred             HHHHHHHHHhhc
Confidence            999998766554

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=2.5e-16  Score=107.61  Aligned_cols=148  Identities=17%  Similarity=0.213  Sum_probs=107.0

Q ss_pred             ccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhcc---CCCEEEEEEECCC-hhh
Q 030931            4 VKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFN---NTDGLIYVVDSLD-RER   75 (169)
Q Consensus         4 ~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~~~ii~v~d~~~-~~~   75 (169)
                      +=++||||+|+.++    .....+++..+...+..+.-...+.|.|||.+.+.....++.   .+.++|||+|... ...
T Consensus        45 Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~  124 (238)
T KOG0090|consen   45 GLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKN  124 (238)
T ss_pred             ecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchh
Confidence            45799999999987    344455555677777778877999999999998887777777   7999999999853 334


Q ss_pred             HHHHHHHHHHHhcCC--CCCCCeEEEEEeCCCCCCCCCHhHHHhh-----------------------------------
Q 030931           76 IGKAKQEFQAIIKDP--FMLNSVILVFANKQDMKGAMTPMEVCEG-----------------------------------  118 (169)
Q Consensus        76 ~~~~~~~~~~~~~~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~-----------------------------------  118 (169)
                      ...+.+++-+++-..  ....+|+++++||.|+..+.+.+.+.+.                                   
T Consensus       125 vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~d  204 (238)
T KOG0090|consen  125 VRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGED  204 (238)
T ss_pred             hHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccc
Confidence            555665555555433  3567999999999999765442222111                                   


Q ss_pred             hCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931          119 LGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus       119 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      +.+..++...+.+.++|++++ ++++.-+|+.+.
T Consensus       205 F~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  205 FKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             cchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence            111122335567999999999 799999998765

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.72  E-value=5.8e-18  Score=116.45  Aligned_cols=133  Identities=13%  Similarity=0.092  Sum_probs=81.0

Q ss_pred             ccccCCCCCceeeeeceee-----eeeeeeEE--EEEEEECCEEEEEEEcCCCCC----------chhhHHhhcc---CC
Q 030931            2 LRVKQPYCTSCTLVKFYLL-----FLLLVRFN--VEKVQYKNVIFTVWDVGGQEK----------LRPLWRHYFN---NT   61 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-----~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~---~~   61 (169)
                      +++.+|+|||||++++...     +.++.+.+  ...+..+. .+.+|||||...          +..+...+++   .+
T Consensus        23 ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (179)
T TIGR03598        23 FAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND-GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENL  101 (179)
T ss_pred             EEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC-cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhh
Confidence            5678999999999987332     22333321  11122222 699999999532          2233334554   35


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCCCCCceeEEEEeeec
Q 030931           62 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDLKNRKWHIQGTCAL  137 (169)
Q Consensus        62 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~  137 (169)
                      +++++|+|.+++.+.... .++. ++..   .+.|+++++||+|+.+...    .+++.+.+...   ...++++++||+
T Consensus       102 ~~ii~vvd~~~~~~~~~~-~~~~-~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~---~~~~~v~~~Sa~  173 (179)
T TIGR03598       102 KGVVLLMDIRHPLKELDL-EMLE-WLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD---ADDPSVQLFSSL  173 (179)
T ss_pred             cEEEEEecCCCCCCHHHH-HHHH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---cCCCceEEEECC
Confidence            899999999775444433 2222 2222   3689999999999864322    22333333221   123469999999


Q ss_pred             cCCCHH
Q 030931          138 KGDGLY  143 (169)
Q Consensus       138 ~~~gi~  143 (169)
                      +|+|++
T Consensus       174 ~g~gi~  179 (179)
T TIGR03598       174 KKTGID  179 (179)
T ss_pred             CCCCCC
Confidence            999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.72  E-value=7.8e-17  Score=128.06  Aligned_cols=144  Identities=18%  Similarity=0.064  Sum_probs=95.4

Q ss_pred             ccccCCCCCceeeeecee---------eeeeeeeEEEEEEEEC----C-------E-----EEEEEEcCCCCCchhhHHh
Q 030931            2 LRVKQPYCTSCTLVKFYL---------LFLLLVRFNVEKVQYK----N-------V-----IFTVWDVGGQEKLRPLWRH   56 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~---------~~~~t~~~~~~~~~~~----~-------~-----~~~i~D~~G~~~~~~~~~~   56 (169)
                      +++..++|||||++++..         ...+++|..+...+..    +       .     .+.+|||||++.|..++..
T Consensus        11 i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~   90 (586)
T PRK04004         11 VLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKR   90 (586)
T ss_pred             EECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHHHHHH
Confidence            567899999999998722         2234555444332210    0       1     2689999999999999998


Q ss_pred             hccCCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--------------HhH-----
Q 030931           57 YFNNTDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--------------PME-----  114 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--------------~~~-----  114 (169)
                      .++.+|++++|+|+++   +.+++.+.    .+ ..   .+.|+++++||+|+.....              ...     
T Consensus        91 ~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~-~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f  162 (586)
T PRK04004         91 GGALADIAILVVDINEGFQPQTIEAIN----IL-KR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQEL  162 (586)
T ss_pred             hHhhCCEEEEEEECCCCCCHhHHHHHH----HH-HH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHH
Confidence            8999999999999987   45555443    12 11   3689999999999852110              011     


Q ss_pred             ------HHhhhC---CCCC-------CCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931          115 ------VCEGLG---LFDL-------KNRKWHIQGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus       115 ------~~~~~~---~~~~-------~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                            +...+.   +...       -....+++++||++|+|+.+++..+...+
T Consensus       163 ~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        163 EEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence                  111111   1100       01346799999999999999998886533

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.72  E-value=2e-17  Score=126.87  Aligned_cols=115  Identities=17%  Similarity=0.064  Sum_probs=78.1

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---  112 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---  112 (169)
                      ...+.+||+|||+.|...+......+|++++|+|+++..........+..+ ...  ...|+++++||+|+.+....   
T Consensus        79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~  155 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALEN  155 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHH
Confidence            468999999999999888888888999999999998632112222222222 111  23579999999998653221   


Q ss_pred             -hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931          113 -MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE  155 (169)
Q Consensus       113 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  155 (169)
                       +++.+.+...  ...+++++++||++|+|++++++++...+..
T Consensus       156 ~~~i~~~l~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~  197 (406)
T TIGR03680       156 YEEIKEFVKGT--VAENAPIIPVSALHNANIDALLEAIEKFIPT  197 (406)
T ss_pred             HHHHHhhhhhc--ccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence             1222211100  1125689999999999999999999987654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.71  E-value=3.3e-17  Score=110.79  Aligned_cols=143  Identities=14%  Similarity=0.047  Sum_probs=87.9

Q ss_pred             ccccCCCCCceeeeece-----eeeeeeeeEE--EEEEEECCEEEEEEEcCCCCC----------chhhHHhhcc---CC
Q 030931            2 LRVKQPYCTSCTLVKFY-----LLFLLLVRFN--VEKVQYKNVIFTVWDVGGQEK----------LRPLWRHYFN---NT   61 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-----~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~---~~   61 (169)
                      |++..|+|||||++.+.     ....++.+..  ...+..+. .+.+|||||...          +......++.   .+
T Consensus         4 l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (170)
T cd01876           4 FAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENL   82 (170)
T ss_pred             EEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhh
Confidence            67899999999999764     2233333322  22233333 899999999543          2333344444   45


Q ss_pred             CEEEEEEECCChhh--HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC-CCceeEEEEeeecc
Q 030931           62 DGLIYVVDSLDRER--IGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALK  138 (169)
Q Consensus        62 ~~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~  138 (169)
                      +++++++|..+..+  ...+.+|+...       +.|+++++||+|+.................. .....+++++||++
T Consensus        83 ~~~~~v~d~~~~~~~~~~~~~~~l~~~-------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~  155 (170)
T cd01876          83 KGVVLLIDSRHGPTEIDLEMLDWLEEL-------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLK  155 (170)
T ss_pred             hEEEEEEEcCcCCCHhHHHHHHHHHHc-------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCC
Confidence            78899999875532  22233444332       5799999999998543222222221110000 12334689999999


Q ss_pred             CCCHHHHHHHHHHH
Q 030931          139 GDGLYEGLDWLAST  152 (169)
Q Consensus       139 ~~gi~~~~~~l~~~  152 (169)
                      +.|+.++++++.+.
T Consensus       156 ~~~~~~l~~~l~~~  169 (170)
T cd01876         156 GQGIDELRALIEKW  169 (170)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.70  E-value=6.4e-17  Score=129.17  Aligned_cols=146  Identities=15%  Similarity=0.062  Sum_probs=97.4

Q ss_pred             cccCCCCCceeeeecee----------eeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            3 RVKQPYCTSCTLVKFYL----------LFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         3 ~~~~~~~Ktsll~~f~~----------~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      .+..+.|||||++++..          ....|+...+..+.. .+..+.+||||||++|.......+.++|++++|+|++
T Consensus         6 ~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~   85 (614)
T PRK10512          6 AGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACD   85 (614)
T ss_pred             ECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECC
Confidence            45788999999998741          235566665555544 4577999999999999777777789999999999987


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHhH----HHhhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTPME----VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      +.. .....+.+. ++...   +.| +++|+||+|+.+....++    +.+.+...  .....+++++||++|+|+++++
T Consensus        86 eg~-~~qT~ehl~-il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~--~~~~~~ii~VSA~tG~gI~~L~  158 (614)
T PRK10512         86 DGV-MAQTREHLA-ILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREY--GFAEAKLFVTAATEGRGIDALR  158 (614)
T ss_pred             CCC-cHHHHHHHH-HHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhc--CCCCCcEEEEeCCCCCCCHHHH
Confidence            632 112222222 22211   344 689999999864322222    22222110  1123579999999999999999


Q ss_pred             HHHHHHHHh
Q 030931          147 DWLASTLKE  155 (169)
Q Consensus       147 ~~l~~~~~~  155 (169)
                      +.+......
T Consensus       159 ~~L~~~~~~  167 (614)
T PRK10512        159 EHLLQLPER  167 (614)
T ss_pred             HHHHHhhcc
Confidence            999876544

>COG1159 Era GTPase [General function prediction only]

Probab=99.70  E-value=6.4e-17  Score=116.09  Aligned_cols=148  Identities=19%  Similarity=0.103  Sum_probs=99.4

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee--------EEEEEEEECCEEEEEEEcCCCCCch--------hhHHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR--------FNVEKVQYKNVIFTVWDVGGQEKLR--------PLWRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~--------~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~~~~ii   65 (169)
                      +++.+.+|||||+|++..+-.+.+.        .-..-+..+...+.+.||||..+-.        ......+.++|+++
T Consensus        11 IiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlil   90 (298)
T COG1159          11 IIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLIL   90 (298)
T ss_pred             EEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEE
Confidence            5689999999999987433333333        2223345578999999999954321        22334578999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      ||+|+++...-  -.+++-+.++.   .+.|+++++||+|...... .....+.+...   .....++++||++|.|++.
T Consensus        91 fvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~---~~f~~ivpiSA~~g~n~~~  162 (298)
T COG1159          91 FVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKL---LPFKEIVPISALKGDNVDT  162 (298)
T ss_pred             EEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhh---CCcceEEEeeccccCCHHH
Confidence            99999763222  23334344332   3679999999999865544 22333333221   1122699999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030931          145 GLDWLASTLKEMR  157 (169)
Q Consensus       145 ~~~~l~~~~~~~~  157 (169)
                      +.+.+...+.+..
T Consensus       163 L~~~i~~~Lpeg~  175 (298)
T COG1159         163 LLEIIKEYLPEGP  175 (298)
T ss_pred             HHHHHHHhCCCCC
Confidence            9999998887754

>PRK13351 elongation factor G; Reviewed

Probab=99.70  E-value=1.5e-16  Score=129.30  Aligned_cols=103  Identities=14%  Similarity=0.106  Sum_probs=81.5

Q ss_pred             ccccCCCCCceeeeecee-------------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931            2 LRVKQPYCTSCTLVKFYL-------------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH   56 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   56 (169)
                      +++..++|||||++++..                         .+.+|+......+.++++++++|||||+..|...+..
T Consensus        13 iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~   92 (687)
T PRK13351         13 ILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVER   92 (687)
T ss_pred             EECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHH
Confidence            567899999999998721                         2345666667778889999999999999999999999


Q ss_pred             hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931           57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  109 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  109 (169)
                      +++.+|++++|+|.++.........| ..+..    .++|+++++||+|+...
T Consensus        93 ~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~----~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         93 SLRVLDGAVVVFDAVTGVQPQTETVW-RQADR----YGIPRLIFINKMDRVGA  140 (687)
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh----cCCCEEEEEECCCCCCC
Confidence            99999999999999887665544333 22211    36899999999998754

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.69  E-value=3.8e-17  Score=115.81  Aligned_cols=115  Identities=20%  Similarity=0.228  Sum_probs=74.5

Q ss_pred             EEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhh---H---HHHHHHHHHHhcCCCCCCCeEEEE
Q 030931           27 FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER---I---GKAKQEFQAIIKDPFMLNSVILVF  100 (169)
Q Consensus        27 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~piivv  100 (169)
                      .....+.++++++.+|||||+..|...+...++.+|++++|+|+++...   |   ......+. ....  ....|++++
T Consensus        67 ~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~iiiv  143 (219)
T cd01883          67 VGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART--LGVKQLIVA  143 (219)
T ss_pred             cceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH--cCCCeEEEE
Confidence            3345577789999999999998887777777888999999999987411   1   11111111 1111  124689999


Q ss_pred             EeCCCCCCCC-C---HhHHHhh----hCCCCCCCceeEEEEeeeccCCCHHH
Q 030931          101 ANKQDMKGAM-T---PMEVCEG----LGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus       101 ~nK~Dl~~~~-~---~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      +||+|+..+. +   ..++.+.    +.........++++++||++|+|+.+
T Consensus       144 vNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~  195 (219)
T cd01883         144 VNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE  195 (219)
T ss_pred             EEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence            9999997321 1   1222222    22111123357899999999999873

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.69  E-value=6.3e-17  Score=113.84  Aligned_cols=139  Identities=14%  Similarity=0.023  Sum_probs=87.2

Q ss_pred             ccccCCCCCceeeeece------e--e------------------------------eeeeeeEEEEEEEECCEEEEEEE
Q 030931            2 LRVKQPYCTSCTLVKFY------L--L------------------------------FLLLVRFNVEKVQYKNVIFTVWD   43 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~------~--~------------------------------~~~t~~~~~~~~~~~~~~~~i~D   43 (169)
                      +++..++|||||++++-      .  .                              ...|+......+..++.++.+||
T Consensus         4 iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~liD   83 (208)
T cd04166           4 TCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFIIAD   83 (208)
T ss_pred             EEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEEEEE
Confidence            56789999999999761      0  0                              12233344455666888999999


Q ss_pred             cCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCC
Q 030931           44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGL  121 (169)
Q Consensus        44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~  121 (169)
                      |||+++|.......++.+|++++|+|+++...-. ..... .+++..  ...++++|+||+|+.+...  ..++...+..
T Consensus        84 TpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~-~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~  159 (208)
T cd04166          84 TPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHS-YILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADYLA  159 (208)
T ss_pred             CCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHH-HHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHHHH
Confidence            9999988776777789999999999997643211 11111 122211  1246788999999864211  1111111110


Q ss_pred             --CCCCCceeEEEEeeeccCCCHHH
Q 030931          122 --FDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus       122 --~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                        ........+++++||++|.|+.+
T Consensus       160 ~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         160 FAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHcCCCCceEEEEeCCCCCCCcc
Confidence              00111234689999999999875

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.69  E-value=8.5e-17  Score=123.43  Aligned_cols=115  Identities=16%  Similarity=0.052  Sum_probs=74.5

Q ss_pred             EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----
Q 030931           37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----  112 (169)
Q Consensus        37 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~----  112 (169)
                      ..+++|||||++.|..........+|++++|+|+++..........+..+ ...  ...|+++|+||+|+.+....    
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHH
Confidence            68999999999887765555566789999999998542111111111111 111  23478999999998653221    


Q ss_pred             hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          113 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      +++...+...  ....++++++||++|+|++++++++...+...
T Consensus       162 ~~i~~~l~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~  203 (411)
T PRK04000        162 EQIKEFVKGT--VAENAPIIPVSALHKVNIDALIEAIEEEIPTP  203 (411)
T ss_pred             HHHHHHhccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence            1122211100  12246799999999999999999999876543

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=3.3e-16  Score=119.86  Aligned_cols=149  Identities=15%  Similarity=0.092  Sum_probs=106.8

Q ss_pred             CCCceeeeec----------------------eeeeeeeeeEEEEEEEEC---CEEEEEEEcCCCCCchhhHHhhccCCC
Q 030931            8 YCTSCTLVKF----------------------YLLFLLLVRFNVEKVQYK---NVIFTVWDVGGQEKLRPLWRHYFNNTD   62 (169)
Q Consensus         8 ~~Ktsll~~f----------------------~~~~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~   62 (169)
                      =|||||..|+                      ..+..-|+......+-+.   .+.++++|||||-.|......-+..|+
T Consensus        71 HGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~  150 (650)
T KOG0462|consen   71 HGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACD  150 (650)
T ss_pred             CCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcC
Confidence            4899998864                      123344555444444444   499999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931           63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  142 (169)
Q Consensus        63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  142 (169)
                      ++++|+|++....-..+..++..+ +    .+.-+|.|+||+|++.+.. +.+...+... ......+.+.+||++|.|+
T Consensus       151 G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~adp-e~V~~q~~~l-F~~~~~~~i~vSAK~G~~v  223 (650)
T KOG0462|consen  151 GALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSADP-ERVENQLFEL-FDIPPAEVIYVSAKTGLNV  223 (650)
T ss_pred             ceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCCCH-HHHHHHHHHH-hcCCccceEEEEeccCccH
Confidence            999999998755444444444444 2    3678999999999987643 3333322211 1222336999999999999


Q ss_pred             HHHHHHHHHHHHhhhcccccc
Q 030931          143 YEGLDWLASTLKEMRAAGYSS  163 (169)
Q Consensus       143 ~~~~~~l~~~~~~~~~~~~~~  163 (169)
                      +++++++++.++.++.....|
T Consensus       224 ~~lL~AII~rVPpP~~~~d~p  244 (650)
T KOG0462|consen  224 EELLEAIIRRVPPPKGIRDAP  244 (650)
T ss_pred             HHHHHHHHhhCCCCCCCCCcc
Confidence            999999999998876554433

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.67  E-value=1.1e-15  Score=115.73  Aligned_cols=141  Identities=13%  Similarity=0.101  Sum_probs=103.9

Q ss_pred             ccccCCCCCceeeeec--------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhH--------HhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKF--------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLW--------RHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f--------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~~~~~~ii   65 (169)
                      |.++|.+|||||+|.+        ++-+.+|-.+-...++.+++.+.+.||+|...-....        ...++.||.++
T Consensus       222 IiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL  301 (454)
T COG0486         222 IIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVL  301 (454)
T ss_pred             EECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEE
Confidence            5679999999999976        5666777777788899999999999999976543332        34578999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      +|+|.+.+.+-.+.. .+. .    ...+.|+++|.||.|+........+ . .      ..+.+++.+||++|+|++.+
T Consensus       302 ~v~D~~~~~~~~d~~-~~~-~----~~~~~~~i~v~NK~DL~~~~~~~~~-~-~------~~~~~~i~iSa~t~~Gl~~L  367 (454)
T COG0486         302 FVLDASQPLDKEDLA-LIE-L----LPKKKPIIVVLNKADLVSKIELESE-K-L------ANGDAIISISAKTGEGLDAL  367 (454)
T ss_pred             EEEeCCCCCchhhHH-HHH-h----cccCCCEEEEEechhcccccccchh-h-c------cCCCceEEEEecCccCHHHH
Confidence            999998852222211 111 1    2247899999999999865443322 1 0      11225899999999999999


Q ss_pred             HHHHHHHHHhh
Q 030931          146 LDWLASTLKEM  156 (169)
Q Consensus       146 ~~~l~~~~~~~  156 (169)
                      .+.+...+...
T Consensus       368 ~~~i~~~~~~~  378 (454)
T COG0486         368 REAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHhhc
Confidence            99998877766

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.66  E-value=6.8e-16  Score=112.54  Aligned_cols=102  Identities=15%  Similarity=0.131  Sum_probs=75.2

Q ss_pred             ccccCCCCCceeeeecee-------------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931            2 LRVKQPYCTSCTLVKFYL-------------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH   56 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   56 (169)
                      |++..|+|||||++++-.                         ....|+......+.++++.+++|||||+..+...+..
T Consensus         4 ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~   83 (268)
T cd04170           4 LVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGETRA   83 (268)
T ss_pred             EECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHHHHH
Confidence            678999999999997511                         0123333445567778999999999999888888888


Q ss_pred             hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      +++.+|++++|+|+++........ .+..+ .   ..++|.++++||+|+..
T Consensus        84 ~l~~aD~~i~Vvd~~~g~~~~~~~-~~~~~-~---~~~~p~iivvNK~D~~~  130 (268)
T cd04170          84 ALRAADAALVVVSAQSGVEVGTEK-LWEFA-D---EAGIPRIIFINKMDRER  130 (268)
T ss_pred             HHHHCCEEEEEEeCCCCCCHHHHH-HHHHH-H---HcCCCEEEEEECCccCC
Confidence            999999999999998754443222 22222 1   13689999999999763

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.66  E-value=1e-15  Score=115.69  Aligned_cols=146  Identities=14%  Similarity=0.140  Sum_probs=110.0

Q ss_pred             CCCceeeeec----------------------eeeeeeeeeEEEEEEEE-----CCEEEEEEEcCCCCCchhhHHhhccC
Q 030931            8 YCTSCTLVKF----------------------YLLFLLLVRFNVEKVQY-----KNVIFTVWDVGGQEKLRPLWRHYFNN   60 (169)
Q Consensus         8 ~~Ktsll~~f----------------------~~~~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~   60 (169)
                      -|||||..|+                      ..+..-|+..+..++.+     ..+.+++.|||||-.|......-+..
T Consensus        20 HGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAA   99 (603)
T COG0481          20 HGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAA   99 (603)
T ss_pred             CCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhh
Confidence            4899998864                      23445566655555555     45999999999999999988888999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCCCCCceeEEEEeeec
Q 030931           61 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDLKNRKWHIQGTCAL  137 (169)
Q Consensus        61 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~  137 (169)
                      |.++++|+|++..-.-..+...+..+  +   .+..++-|+||+||+.+..   ..++.+.+++...     ..+.+|||
T Consensus       100 CEGalLvVDAsQGveAQTlAN~YlAl--e---~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~-----dav~~SAK  169 (603)
T COG0481         100 CEGALLVVDASQGVEAQTLANVYLAL--E---NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS-----DAVLVSAK  169 (603)
T ss_pred             CCCcEEEEECccchHHHHHHHHHHHH--H---cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc-----hheeEecc
Confidence            99999999998754444444444444  1   3788999999999987643   3566666665532     37999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhhcccccc
Q 030931          138 KGDGLYEGLDWLASTLKEMRAAGYSS  163 (169)
Q Consensus       138 ~~~gi~~~~~~l~~~~~~~~~~~~~~  163 (169)
                      +|.||+++++.+++.++.++.....|
T Consensus       170 tG~gI~~iLe~Iv~~iP~P~g~~~~p  195 (603)
T COG0481         170 TGIGIEDVLEAIVEKIPPPKGDPDAP  195 (603)
T ss_pred             cCCCHHHHHHHHHhhCCCCCCCCCCc
Confidence            99999999999999998877544433

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.65  E-value=9.1e-16  Score=120.64  Aligned_cols=103  Identities=16%  Similarity=0.184  Sum_probs=74.2

Q ss_pred             ccccCCCCCceeeeece--ee--------------e-------------eeeeeEEEEEEEECCEEEEEEEcCCCCCchh
Q 030931            2 LRVKQPYCTSCTLVKFY--LL--------------F-------------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP   52 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~--~~--------------~-------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~   52 (169)
                      |++-.++|||||++++-  ..              .             ..|+......+.++++++++|||||+..|..
T Consensus        15 IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~~   94 (526)
T PRK00741         15 IISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFSE   94 (526)
T ss_pred             EECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchhhHH
Confidence            45678999999999761  00              0             1112233455778899999999999999988


Q ss_pred             hHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931           53 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  109 (169)
Q Consensus        53 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  109 (169)
                      ....+++.+|++|+|+|+++.... ....++...    ...++|+++++||+|+...
T Consensus        95 ~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~~~iPiiv~iNK~D~~~a  146 (526)
T PRK00741         95 DTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC----RLRDTPIFTFINKLDRDGR  146 (526)
T ss_pred             HHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH----HhcCCCEEEEEECCccccc
Confidence            888889999999999999764322 223333333    1247899999999998653

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.64  E-value=1.9e-15  Score=105.13  Aligned_cols=137  Identities=18%  Similarity=0.076  Sum_probs=88.1

Q ss_pred             ccccCCCCCceeeeecee-----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931            2 LRVKQPYCTSCTLVKFYL-----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF   58 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   58 (169)
                      +++..++|||||++++..                       ....|+......+..++..+.+.||||+..|.......+
T Consensus         7 iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~   86 (195)
T cd01884           7 TIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGA   86 (195)
T ss_pred             EECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHh
Confidence            456889999999997621                       122233333444556788999999999988877777788


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-----hHHHhhhCCCCCCCceeEEE
Q 030931           59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-----MEVCEGLGLFDLKNRKWHIQ  132 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~~  132 (169)
                      ..+|++++|+|+..... ......+..+..    .++| +++++||+|+......     .++...+.........++++
T Consensus        87 ~~~D~~ilVvda~~g~~-~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~ii  161 (195)
T cd01884          87 AQMDGAILVVSATDGPM-PQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIV  161 (195)
T ss_pred             hhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEE
Confidence            99999999999975322 122222333321    2455 7899999998532211     12223222111122357899


Q ss_pred             EeeeccCCCHH
Q 030931          133 GTCALKGDGLY  143 (169)
Q Consensus       133 ~~Sa~~~~gi~  143 (169)
                      ++||++|.|+.
T Consensus       162 piSa~~g~n~~  172 (195)
T cd01884         162 RGSALKALEGD  172 (195)
T ss_pred             EeeCccccCCC
Confidence            99999999863

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.64  E-value=9.7e-16  Score=108.72  Aligned_cols=113  Identities=19%  Similarity=0.151  Sum_probs=73.6

Q ss_pred             ECCEEEEEEEcCCCCCchhhHHhhcc--CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC
Q 030931           34 YKNVIFTVWDVGGQEKLRPLWRHYFN--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT  111 (169)
Q Consensus        34 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~  111 (169)
                      ..+..+.+.||||+++|.......+.  .+|++++|+|+..... .....++..+..    .++|+++|.||+|+.+...
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----~~ip~ivvvNK~D~~~~~~  155 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----LNIPVFVVVTKIDLAPANI  155 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEECccccCHHH
Confidence            35678999999999988765554454  6899999999865432 222233333321    3689999999999864322


Q ss_pred             H----hHHHhhhCCCC---------------------CCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931          112 P----MEVCEGLGLFD---------------------LKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus       112 ~----~~~~~~~~~~~---------------------~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      .    .++.+.+....                     ......++|.+||.+|+|++++...|..
T Consensus       156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            2    22333332110                     0122348999999999999998876643

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.64  E-value=3.6e-15  Score=108.50  Aligned_cols=102  Identities=14%  Similarity=0.120  Sum_probs=75.1

Q ss_pred             ccccCCCCCceeeeece---e----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931            2 LRVKQPYCTSCTLVKFY---L----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH   56 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~---~----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   56 (169)
                      +++..++|||||++++-   .                      ....|+......+.++++++.+|||||+..|...+..
T Consensus         4 ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~   83 (270)
T cd01886           4 IIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVER   83 (270)
T ss_pred             EEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHH
Confidence            56789999999999761   1                      1122333445667889999999999999999888999


Q ss_pred             hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      .++.+|++++|+|..+...-. ....+.....    .++|+++++||+|+.+
T Consensus        84 ~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~----~~~p~ivviNK~D~~~  130 (270)
T cd01886          84 SLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR----YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence            999999999999997643222 1223333321    3689999999999863

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.63  E-value=3.1e-15  Score=112.95  Aligned_cols=149  Identities=13%  Similarity=-0.002  Sum_probs=103.4

Q ss_pred             ccccCCCCCceeeeec--------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhh-----------HHhhccCCC
Q 030931            2 LRVKQPYCTSCTLVKF--------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL-----------WRHYFNNTD   62 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f--------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~~~~~~~~~   62 (169)
                      ++++|..|||||+|++        .+....|...-...+++++.++.+.||+|..+-...           ....+..|+
T Consensus       183 iiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~  262 (444)
T COG1160         183 IIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERAD  262 (444)
T ss_pred             EEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcC
Confidence            5789999999999987        344555555566678889999999999996542222           223567899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCC
Q 030931           63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGD  140 (169)
Q Consensus        63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  140 (169)
                      .+++|+|.+..-+-.+.+ ....+.+    .+.++++|.||+|+.+.  ...++....+......-...+.+++||++|.
T Consensus       263 vvllviDa~~~~~~qD~~-ia~~i~~----~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~  337 (444)
T COG1160         263 VVLLVIDATEGISEQDLR-IAGLIEE----AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQ  337 (444)
T ss_pred             EEEEEEECCCCchHHHHH-HHHHHHH----cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCC
Confidence            999999998754433322 2222222    37899999999998764  3333443333322223345679999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 030931          141 GLYEGLDWLASTLKE  155 (169)
Q Consensus       141 gi~~~~~~l~~~~~~  155 (169)
                      |+.++|+++......
T Consensus       338 ~i~~l~~~i~~~~~~  352 (444)
T COG1160         338 GLDKLFEAIKEIYEC  352 (444)
T ss_pred             ChHHHHHHHHHHHHH
Confidence            999999998765444

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=2.2e-15  Score=115.46  Aligned_cols=140  Identities=21%  Similarity=0.104  Sum_probs=101.6

Q ss_pred             CCCCceeeeec-------eeeeeeeeeEEEEEEEE---CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh---
Q 030931            7 PYCTSCTLVKF-------YLLFLLLVRFNVEKVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---   73 (169)
Q Consensus         7 ~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~---   73 (169)
                      .=|||||+..+       .+...-|+.+--+.+..   +.-.+.|.|||||+.|..|+..-.+-+|.+|+|+|++|.   
T Consensus        15 DHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~p   94 (509)
T COG0532          15 DHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMP   94 (509)
T ss_pred             cCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcch
Confidence            45899999966       34555666666666666   346899999999999999999999999999999999763   


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC----CCceeEEEEeeeccCCCHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL----KNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++.+.+.        +....+.|++++.||+|+++. .+..+...+....+    -.....++++||++|+|+.+++..+
T Consensus        95 QTiEAI~--------hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~i  165 (509)
T COG0532          95 QTIEAIN--------HAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELI  165 (509)
T ss_pred             hHHHHHH--------HHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHH
Confidence            3444332        112248999999999999854 33333333321111    1234679999999999999999988


Q ss_pred             HHHHHh
Q 030931          150 ASTLKE  155 (169)
Q Consensus       150 ~~~~~~  155 (169)
                      .-...-
T Consensus       166 ll~aev  171 (509)
T COG0532         166 LLLAEV  171 (509)
T ss_pred             HHHHHH
Confidence            764443

>cd04167 Snu114p Snu114p subfamily

Probab=99.62  E-value=2.7e-15  Score=105.89  Aligned_cols=101  Identities=15%  Similarity=0.127  Sum_probs=71.0

Q ss_pred             ccccCCCCCceeeeeceeeee--------------------------eeeeEEEEEEEE-----CCEEEEEEEcCCCCCc
Q 030931            2 LRVKQPYCTSCTLVKFYLLFL--------------------------LLVRFNVEKVQY-----KNVIFTVWDVGGQEKL   50 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~--------------------------~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~   50 (169)
                      +++..++|||||++++.....                          .|+......+.+     ..+.+++|||||+..|
T Consensus         5 iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f   84 (213)
T cd04167           5 IAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNF   84 (213)
T ss_pred             EEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcch
Confidence            567899999999997621110                          011111122222     3588999999999999


Q ss_pred             hhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           51 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        51 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      ......+++.+|++++|+|+++..+... ..++.....    .+.|+++++||+|+.
T Consensus        85 ~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167          85 MDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence            8888899999999999999987655532 334443322    358999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.62  E-value=3.5e-16  Score=120.46  Aligned_cols=155  Identities=12%  Similarity=-0.003  Sum_probs=110.3

Q ss_pred             ccccCCCCCceeeeec-eeeeeeeee----EEEEEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh
Q 030931            2 LRVKQPYCTSCTLVKF-YLLFLLLVR----FNVEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE   74 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-~~~~~~t~~----~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~   74 (169)
                      |.+..|+|||||+..+ .++..+.+.    ......+.  ..+...|.|++....-+.....-+++|+++.+||+++++.
T Consensus        14 liGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~   93 (625)
T KOG1707|consen   14 LIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDES   93 (625)
T ss_pred             EECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChH
Confidence            5679999999999975 233333333    22222333  4666999999876665666677789999999999999999


Q ss_pred             hHHHHH-HHHHHHhcC-CCCCCCeEEEEEeCCCCCCCCCH--hH-HHhhhCCCCCCCcee-EEEEeeeccCCCHHHHHHH
Q 030931           75 RIGKAK-QEFQAIIKD-PFMLNSVILVFANKQDMKGAMTP--ME-VCEGLGLFDLKNRKW-HIQGTCALKGDGLYEGLDW  148 (169)
Q Consensus        75 ~~~~~~-~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~~--~~-~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~  148 (169)
                      +++.+. .|+..+.+. .....+|+|+||||+|.......  +. +...+..    ...+ ..++|||++..++.++|..
T Consensus        94 T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~----f~EiEtciecSA~~~~n~~e~fYy  169 (625)
T KOG1707|consen   94 TVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIA----FAEIETCIECSALTLANVSELFYY  169 (625)
T ss_pred             HhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHH----hHHHHHHHhhhhhhhhhhHhhhhh
Confidence            999986 688777552 23457999999999998764332  22 2222211    1111 2799999999999999999


Q ss_pred             HHHHHHhhhccc
Q 030931          149 LASTLKEMRAAG  160 (169)
Q Consensus       149 l~~~~~~~~~~~  160 (169)
                      .-+++..+..+-
T Consensus       170 aqKaVihPt~PL  181 (625)
T KOG1707|consen  170 AQKAVIHPTSPL  181 (625)
T ss_pred             hhheeeccCccc
Confidence            998888776544

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.62  E-value=7.3e-15  Score=103.93  Aligned_cols=67  Identities=16%  Similarity=0.200  Sum_probs=54.1

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      ++.+++|||||+..|......+++.+|++++|+|+++...... ...+.....    .++|+++++||+|+.
T Consensus        72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~  138 (222)
T cd01885          72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL  138 (222)
T ss_pred             ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence            7899999999999999999999999999999999987655443 233333322    357999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.61  E-value=4e-16  Score=106.17  Aligned_cols=118  Identities=23%  Similarity=0.250  Sum_probs=73.6

Q ss_pred             ccccCCCCCceeeeece-eeeeeeee--EEEEEEEE---CCEEEEEEEcCCCCCchhhHHh---hccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKFY-LLFLLLVR--FNVEKVQY---KNVIFTVWDVGGQEKLRPLWRH---YFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-~~~~~t~~--~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~---~~~~~~~ii~v~d~~~   72 (169)
                      |.+-.|||||+|+.++. ....+|..  .+...+..   .+..+.++|+|||.+.+.....   +...+.+||||+|.+.
T Consensus         8 L~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~   87 (181)
T PF09439_consen    8 LVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSST   87 (181)
T ss_dssp             EE-STTSSHHHHHHHHHHSS---B---SSEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTT
T ss_pred             EEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCcc
Confidence            55678999999999873 22222222  12222222   4567999999999998875544   4789999999999974


Q ss_pred             -hhhHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030931           73 -RERIGKAKQEFQAIIKD--PFMLNSVILVFANKQDMKGAMTPMEVCEGL  119 (169)
Q Consensus        73 -~~~~~~~~~~~~~~~~~--~~~~~~piivv~nK~Dl~~~~~~~~~~~~~  119 (169)
                       ...+.++.+++-+++..  .....+|+++++||.|+..+.+...+...+
T Consensus        88 ~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~L  137 (181)
T PF09439_consen   88 DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLL  137 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHH
Confidence             44566666666665552  234579999999999998876655444433

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.61  E-value=1.3e-15  Score=99.51  Aligned_cols=132  Identities=14%  Similarity=0.112  Sum_probs=83.9

Q ss_pred             CccccCCCCCceeeeeceeeeeeeeeEEEEEEEECCEEEEEEEcCCCCC----chhhHHhhccCCCEEEEEEECCChhh-
Q 030931            1 MLRVKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEK----LRPLWRHYFNNTDGLIYVVDSLDRER-   75 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~~~~~~ii~v~d~~~~~~-   75 (169)
                      ||.+..|+|||||++++.........  ...+.+.+   .+.||||..-    +....-..-.+||.++++.|.+++.+ 
T Consensus         5 mliG~~g~GKTTL~q~L~~~~~~~~K--Tq~i~~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~   79 (143)
T PF10662_consen    5 MLIGPSGSGKTTLAQALNGEEIRYKK--TQAIEYYD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSV   79 (143)
T ss_pred             EEECCCCCCHHHHHHHHcCCCCCcCc--cceeEecc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCcc
Confidence            68889999999999988553322111  12233333   3589999642    22222223458999999999987643 


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           76 IGKAKQEFQAIIKDPFMLNSVILVFANKQDMK-GAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      |..      .+.+.   -..|++-|+||+|+. +..+.+...+.+.....  .  ++|++|+.+|+|++++.++|-
T Consensus        80 ~pP------~fa~~---f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~--~--~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen   80 FPP------GFASM---FNKPVIGVITKIDLPSDDANIERAKKWLKNAGV--K--EIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             CCc------hhhcc---cCCCEEEEEECccCccchhhHHHHHHHHHHcCC--C--CeEEEECCCCcCHHHHHHHHh
Confidence            221      12111   157999999999997 22233333334432211  1  379999999999999998873

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>smart00275 G_alpha G protein alpha subunit

Probab=99.60  E-value=2.2e-14  Score=107.63  Aligned_cols=138  Identities=20%  Similarity=0.301  Sum_probs=108.3

Q ss_pred             eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHhcC
Q 030931           20 LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKD   89 (169)
Q Consensus        20 ~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~   89 (169)
                      ...||.|++...+..++..+.+||++|+...+..|..++.+++++|||+|+++          ..++.+....++.++..
T Consensus       167 ~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~  246 (342)
T smart00275      167 SRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS  246 (342)
T ss_pred             eeCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC
Confidence            34678888889999999999999999999999999999999999999999986          35688888889999988


Q ss_pred             CCCCCCeEEEEEeCCCCCCC-----------------CCHhHHHh----hhCCCCC--CCceeEEEEeeeccCCCHHHHH
Q 030931           90 PFMLNSVILVFANKQDMKGA-----------------MTPMEVCE----GLGLFDL--KNRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus        90 ~~~~~~piivv~nK~Dl~~~-----------------~~~~~~~~----~~~~~~~--~~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      ....+.|+++++||.|+...                 .+.++..+    .+.....  ..+.+....++|.+..++..+|
T Consensus       247 ~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~  326 (342)
T smart00275      247 RWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVF  326 (342)
T ss_pred             ccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHH
Confidence            77889999999999997421                 01111111    1111000  2245677889999999999999


Q ss_pred             HHHHHHHHhhh
Q 030931          147 DWLASTLKEMR  157 (169)
Q Consensus       147 ~~l~~~~~~~~  157 (169)
                      +.+...+.+..
T Consensus       327 ~~v~~~I~~~~  337 (342)
T smart00275      327 DAVKDIILQRN  337 (342)
T ss_pred             HHHHHHHHHHH
Confidence            99988887754

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK12736 elongation factor Tu; Reviewed

Probab=99.60  E-value=7.1e-15  Score=112.47  Aligned_cols=148  Identities=16%  Similarity=0.091  Sum_probs=93.4

Q ss_pred             ccccCCCCCceeeeecee-----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931            2 LRVKQPYCTSCTLVKFYL-----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF   58 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   58 (169)
                      +.+..++|||||+.++..                       ...-|+......+..++..+.++|||||++|........
T Consensus        17 i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~   96 (394)
T PRK12736         17 TIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGA   96 (394)
T ss_pred             EEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHH
Confidence            356788999999997621                       222333333344555778899999999998877666667


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCHh-----HHHhhhCCCCCCCceeEEE
Q 030931           59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTPM-----EVCEGLGLFDLKNRKWHIQ  132 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~~~~  132 (169)
                      ..+|++++|+|+.+... ......+..+..    .++| +++++||+|+.+.....     ++...+..........+++
T Consensus        97 ~~~d~~llVvd~~~g~~-~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii  171 (394)
T PRK12736         97 AQMDGAILVVAATDGPM-PQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVI  171 (394)
T ss_pred             hhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEE
Confidence            88999999999975321 122233333321    2567 67899999986422211     2222221111122246899


Q ss_pred             EeeeccCC--------CHHHHHHHHHHHHH
Q 030931          133 GTCALKGD--------GLYEGLDWLASTLK  154 (169)
Q Consensus       133 ~~Sa~~~~--------gi~~~~~~l~~~~~  154 (169)
                      ++||++|.        ++.++++.+...+.
T Consensus       172 ~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        172 RGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             EeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            99999983        56777777776654

>cd04169 RF3 RF3 subfamily

Probab=99.60  E-value=1.3e-14  Score=105.54  Aligned_cols=114  Identities=18%  Similarity=0.233  Sum_probs=79.9

Q ss_pred             ccccCCCCCceeeeece------ee-----------------------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchh
Q 030931            2 LRVKQPYCTSCTLVKFY------LL-----------------------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP   52 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~------~~-----------------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~   52 (169)
                      |++-.++|||||++++.      ..                       ...++......++++++++++|||||+.+|..
T Consensus         7 ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~   86 (267)
T cd04169           7 IISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSE   86 (267)
T ss_pred             EEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHH
Confidence            56789999999999751      00                       01122234456788999999999999999888


Q ss_pred             hHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhC
Q 030931           53 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLG  120 (169)
Q Consensus        53 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~  120 (169)
                      .....++.+|++|+|+|+++.... ....++... +   ..++|+++++||+|+.....   .+++.+.++
T Consensus        87 ~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~-~---~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~  152 (267)
T cd04169          87 DTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC-R---LRGIPIITFINKLDREGRDPLELLDEIEEELG  152 (267)
T ss_pred             HHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH-H---hcCCCEEEEEECCccCCCCHHHHHHHHHHHHC
Confidence            788889999999999999764322 222333332 2   13689999999999876533   245555554

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd00066 G-alpha G protein alpha subunit

Probab=99.59  E-value=1.9e-14  Score=107.12  Aligned_cols=138  Identities=22%  Similarity=0.308  Sum_probs=108.2

Q ss_pred             eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh----------hhHHHHHHHHHHHhcC
Q 030931           20 LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR----------ERIGKAKQEFQAIIKD   89 (169)
Q Consensus        20 ~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~~~~~~~~~~~~~~~~   89 (169)
                      ...||.|+....+.++++.+.+||++|+...+..|..++.+++++|||+|+++-          +++.+....++.++..
T Consensus       144 ~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~  223 (317)
T cd00066         144 ARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS  223 (317)
T ss_pred             eecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC
Confidence            346788888889999999999999999999999999999999999999999873          5788888889999888


Q ss_pred             CCCCCCeEEEEEeCCCCCCC------------------CCHhHHHhhhC----C-CCCCCceeEEEEeeeccCCCHHHHH
Q 030931           90 PFMLNSVILVFANKQDMKGA------------------MTPMEVCEGLG----L-FDLKNRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus        90 ~~~~~~piivv~nK~Dl~~~------------------~~~~~~~~~~~----~-~~~~~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      ....+.|+++++||.|+...                  .+.++..+.+.    . .....+.+....++|.+..++..+|
T Consensus       224 ~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf  303 (317)
T cd00066         224 RWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVF  303 (317)
T ss_pred             ccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHH
Confidence            77789999999999996321                  11111111111    0 0002355667889999999999999


Q ss_pred             HHHHHHHHhhh
Q 030931          147 DWLASTLKEMR  157 (169)
Q Consensus       147 ~~l~~~~~~~~  157 (169)
                      +.+.+.+....
T Consensus       304 ~~v~~~i~~~~  314 (317)
T cd00066         304 DAVKDIILQNN  314 (317)
T ss_pred             HHHHHHHHHHH
Confidence            99998887654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK12740 elongation factor G; Reviewed

Probab=99.59  E-value=1.9e-14  Score=116.85  Aligned_cols=100  Identities=13%  Similarity=0.070  Sum_probs=76.8

Q ss_pred             ccCCCCCceeeeec---ee----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931            4 VKQPYCTSCTLVKF---YL----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF   58 (169)
Q Consensus         4 ~~~~~~Ktsll~~f---~~----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   58 (169)
                      +..++|||||++++   ..                      +...|++.....+.++++.+.+|||||+..+...+..++
T Consensus         2 g~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l   81 (668)
T PRK12740          2 GHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERAL   81 (668)
T ss_pred             CCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHH
Confidence            46789999999976   10                      234456666677888999999999999998888888899


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      +.+|++++|+|+++........ .+..+..    .++|+++|+||+|+..
T Consensus        82 ~~aD~vllvvd~~~~~~~~~~~-~~~~~~~----~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         82 RVLDGAVVVVCAVGGVEPQTET-VWRQAEK----YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHhCeEEEEEeCCCCcCHHHHH-HHHHHHH----cCCCEEEEEECCCCCC
Confidence            9999999999998765544332 2233321    3689999999999864

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.59  E-value=1.5e-14  Score=113.88  Aligned_cols=141  Identities=18%  Similarity=0.135  Sum_probs=107.6

Q ss_pred             ccccCCCCCceeeeec-------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhh------HHhhc--cCCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL------WRHYF--NNTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~~~ii~   66 (169)
                      |.++|.+|||||+|++       -+.+.-|++-....+.+++..+++.|.||.+.....      ..+++  ..+|++|.
T Consensus         8 lvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivn   87 (653)
T COG0370           8 LVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVN   87 (653)
T ss_pred             EecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEE
Confidence            5679999999999976       355667777777888889999999999997765432      23343  36799999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931           67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG----AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  142 (169)
Q Consensus        67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  142 (169)
                      |+|+++.++--...-.+.++       +.|++++.|++|..+    ..+.+.+++.++        +|.+++||++|+|+
T Consensus        88 VvDAtnLeRnLyltlQLlE~-------g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG--------vPVv~tvA~~g~G~  152 (653)
T COG0370          88 VVDATNLERNLYLTLQLLEL-------GIPMILALNMIDEAKKRGIRIDIEKLSKLLG--------VPVVPTVAKRGEGL  152 (653)
T ss_pred             EcccchHHHHHHHHHHHHHc-------CCCeEEEeccHhhHHhcCCcccHHHHHHHhC--------CCEEEEEeecCCCH
Confidence            99999976554443333333       789999999999754    345666776665        46999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 030931          143 YEGLDWLASTLKEMR  157 (169)
Q Consensus       143 ~~~~~~l~~~~~~~~  157 (169)
                      +++.+.+.+...++.
T Consensus       153 ~~l~~~i~~~~~~~~  167 (653)
T COG0370         153 EELKRAIIELAESKT  167 (653)
T ss_pred             HHHHHHHHHhccccc
Confidence            999999987665554

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.58  E-value=2.7e-14  Score=116.21  Aligned_cols=102  Identities=14%  Similarity=0.130  Sum_probs=76.5

Q ss_pred             ccccCCCCCceeeeece---e----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931            2 LRVKQPYCTSCTLVKFY---L----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH   56 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~---~----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   56 (169)
                      +++..++|||||++++-   .                      ....|+......+.++++++.+|||||+.++...+..
T Consensus        15 iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~   94 (689)
T TIGR00484        15 ISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTVEVER   94 (689)
T ss_pred             EECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhHHHHH
Confidence            46688999999999761   0                      1223344556677889999999999999999888889


Q ss_pred             hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      .++.+|++++|+|+.+........ ++..+.+    .++|+++++||+|+..
T Consensus        95 ~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        95 SLRVLDGAVAVLDAVGGVQPQSET-VWRQANR----YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             HHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH----cCCCEEEEEECCCCCC
Confidence            999999999999998754443322 2222221    3689999999999874

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.58  E-value=1.3e-14  Score=111.12  Aligned_cols=148  Identities=18%  Similarity=0.088  Sum_probs=92.7

Q ss_pred             ccccCCCCCceeeeecee-----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931            2 LRVKQPYCTSCTLVKFYL-----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF   58 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   58 (169)
                      +.+..++|||||++++..                       ...-|+......+..++..+.++||||++.|.......+
T Consensus        17 iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~   96 (396)
T PRK12735         17 TIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGA   96 (396)
T ss_pred             EECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhh
Confidence            456789999999997631                       122233333344555778899999999988876666777


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCCH-h----HHHhhhCCCCCCCceeEEE
Q 030931           59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQDMKGAMTP-M----EVCEGLGLFDLKNRKWHIQ  132 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~~~~~~~  132 (169)
                      ..+|++++|+|+.+... ......+..+..    .++|.+ +++||+|+.+.... +    ++...+.........++++
T Consensus        97 ~~aD~~llVvda~~g~~-~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii  171 (396)
T PRK12735         97 AQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPII  171 (396)
T ss_pred             ccCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEE
Confidence            88999999999976322 222233333321    256755 68999998642111 1    2222221111111247899


Q ss_pred             EeeeccCC----------CHHHHHHHHHHHHH
Q 030931          133 GTCALKGD----------GLYEGLDWLASTLK  154 (169)
Q Consensus       133 ~~Sa~~~~----------gi~~~~~~l~~~~~  154 (169)
                      ++||.+|.          ++.++++.+...+.
T Consensus       172 ~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        172 RGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             ecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            99999984          56777777776544

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=1.4e-14  Score=111.15  Aligned_cols=139  Identities=19%  Similarity=0.095  Sum_probs=100.4

Q ss_pred             CCCCceeeeec-------eeeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh---hh
Q 030931            7 PYCTSCTLVKF-------YLLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ER   75 (169)
Q Consensus         7 ~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~---~~   75 (169)
                      .=|||||+..|       .+...-|.++-...+.. .+..+.|.|||||..|..|+..-.+-+|.+++|+...|.   ++
T Consensus       163 DHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT  242 (683)
T KOG1145|consen  163 DHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQT  242 (683)
T ss_pred             cCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhH
Confidence            45999999977       34445555554444444 568899999999999999999999999999999988763   23


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC--C--CceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           76 IGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL--K--NRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      .+.+        ++....+.|+++++||+|.+++ +++.+.+.+....+  +  -...+++++||++|+|++.+-+.+.-
T Consensus       243 ~EaI--------khAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill  313 (683)
T KOG1145|consen  243 LEAI--------KHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILL  313 (683)
T ss_pred             HHHH--------HHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHH
Confidence            3322        2223358999999999998865 44444444432222  1  13478999999999999999888775


Q ss_pred             HHH
Q 030931          152 TLK  154 (169)
Q Consensus       152 ~~~  154 (169)
                      +..
T Consensus       314 ~Ae  316 (683)
T KOG1145|consen  314 LAE  316 (683)
T ss_pred             HHH
Confidence            443

>TIGR00503 prfC peptide chain release factor 3

Probab=99.58  E-value=1.5e-14  Score=113.91  Aligned_cols=102  Identities=15%  Similarity=0.181  Sum_probs=72.6

Q ss_pred             ccccCCCCCceeeeec--eeee---------------------------eeeeeEEEEEEEECCEEEEEEEcCCCCCchh
Q 030931            2 LRVKQPYCTSCTLVKF--YLLF---------------------------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP   52 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f--~~~~---------------------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~   52 (169)
                      +++-.++|||||++++  ....                           ..|+......++++++.+++|||||+..|..
T Consensus        16 iiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~df~~   95 (527)
T TIGR00503        16 IISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDFSE   95 (527)
T ss_pred             EEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhhHHH
Confidence            4667899999999975  1100                           1122233455777899999999999999888


Q ss_pred             hHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           53 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        53 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      .....++.+|++|+|+|+++... .....++... +.   .++|+++++||+|+..
T Consensus        96 ~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~-~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        96 DTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVT-RL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             HHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHH-Hh---cCCCEEEEEECccccC
Confidence            77778999999999999976321 1223333322 22   4689999999999853

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.57  E-value=1.7e-14  Score=110.45  Aligned_cols=134  Identities=18%  Similarity=0.074  Sum_probs=83.3

Q ss_pred             ccccCCCCCceeeeecee-----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931            2 LRVKQPYCTSCTLVKFYL-----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF   58 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   58 (169)
                      +++..++|||||++++..                       +...|+......++.++..+.+||||||++|........
T Consensus        17 i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~   96 (394)
T TIGR00485        17 TIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGA   96 (394)
T ss_pred             EEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHH
Confidence            345778999999987621                       123344444445555788899999999998876666667


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeE-EEEEeCCCCCCCCCH-h----HHHhhhCCCCCCCceeEEE
Q 030931           59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMKGAMTP-M----EVCEGLGLFDLKNRKWHIQ  132 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~~~~~~~  132 (169)
                      ..+|++++|+|+.+... ....+.+..+..    .++|. ++++||+|+.+.... +    ++...+.........++++
T Consensus        97 ~~~D~~ilVvda~~g~~-~qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii  171 (394)
T TIGR00485        97 AQMDGAILVVSATDGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPII  171 (394)
T ss_pred             hhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEE
Confidence            78899999999976322 122233333321    24565 478999998643211 1    2222222111111237899


Q ss_pred             EeeeccCC
Q 030931          133 GTCALKGD  140 (169)
Q Consensus       133 ~~Sa~~~~  140 (169)
                      ++||.+|.
T Consensus       172 ~vSa~~g~  179 (394)
T TIGR00485       172 RGSALKAL  179 (394)
T ss_pred             ECcccccc
Confidence            99999885

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.57  E-value=2.1e-14  Score=103.76  Aligned_cols=143  Identities=21%  Similarity=0.186  Sum_probs=97.7

Q ss_pred             ccccCCCCCceeeeece-------eeeeeeeeEEEEEEEECCEE-EEEEEcCCCCCchh-------hHHhhccCCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKFY-------LLFLLLVRFNVEKVQYKNVI-FTVWDVGGQEKLRP-------LWRHYFNNTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-------~~~~~t~~~~~~~~~~~~~~-~~i~D~~G~~~~~~-------~~~~~~~~~~~ii~   66 (169)
                      |.+=|..|||||++.++       ...++|+.....++.+++.. +.+-|.||.-.-..       ..-..++.|+.++|
T Consensus       201 LVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~f  280 (366)
T KOG1489|consen  201 LVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLF  280 (366)
T ss_pred             eecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEE
Confidence            34458899999999663       33445555555566665444 99999999443221       23345678999999


Q ss_pred             EEECCCh---hhHHHHHHHHHHHhc-CCCCCCCeEEEEEeCCCCCCCCC-H-hHHHhhhCCCCCCCceeEEEEeeeccCC
Q 030931           67 VVDSLDR---ERIGKAKQEFQAIIK-DPFMLNSVILVFANKQDMKGAMT-P-MEVCEGLGLFDLKNRKWHIQGTCALKGD  140 (169)
Q Consensus        67 v~d~~~~---~~~~~~~~~~~~~~~-~~~~~~~piivv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  140 (169)
                      |+|++..   +..+.+..+..++-. +..+.+.|.++|+||+|++++.. . .++.+.+..       ..++++||+.++
T Consensus       281 VvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~-------~~V~pvsA~~~e  353 (366)
T KOG1489|consen  281 VVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQN-------PHVVPVSAKSGE  353 (366)
T ss_pred             EEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCC-------CcEEEeeecccc
Confidence            9999987   666666655554422 34567899999999999964321 1 334433321       148999999999


Q ss_pred             CHHHHHHHHHH
Q 030931          141 GLYEGLDWLAS  151 (169)
Q Consensus       141 gi~~~~~~l~~  151 (169)
                      |+.++++.+.+
T Consensus       354 gl~~ll~~lr~  364 (366)
T KOG1489|consen  354 GLEELLNGLRE  364 (366)
T ss_pred             chHHHHHHHhh
Confidence            99999887754

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.55  E-value=7.9e-14  Score=116.04  Aligned_cols=138  Identities=20%  Similarity=0.125  Sum_probs=89.6

Q ss_pred             CCceeeeec-------eeeeeeeeeEEEEEEEECC------------------EEEEEEEcCCCCCchhhHHhhccCCCE
Q 030931            9 CTSCTLVKF-------YLLFLLLVRFNVEKVQYKN------------------VIFTVWDVGGQEKLRPLWRHYFNNTDG   63 (169)
Q Consensus         9 ~Ktsll~~f-------~~~~~~t~~~~~~~~~~~~------------------~~~~i~D~~G~~~~~~~~~~~~~~~~~   63 (169)
                      +||||+..+       .+...-|+.+....+....                  -.+.+||||||+.|..+....++.+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            599999976       2333444444333333211                  128999999999999888888899999


Q ss_pred             EEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC------------------HhHHHh-----
Q 030931           64 LIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT------------------PMEVCE-----  117 (169)
Q Consensus        64 ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~------------------~~~~~~-----  117 (169)
                      +++|+|+++   +.+++.+.    .+ ..   .++|+++|+||+|+.....                  ..++..     
T Consensus       553 vlLVVDa~~Gi~~qT~e~I~----~l-k~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v  624 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAIN----IL-RQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL  624 (1049)
T ss_pred             EEEEEECcccCCHhHHHHHH----HH-HH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            999999986   34444332    22 21   2579999999999853111                  011110     


Q ss_pred             -----hhCCCC-------CCCceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931          118 -----GLGLFD-------LKNRKWHIQGTCALKGDGLYEGLDWLASTLK  154 (169)
Q Consensus       118 -----~~~~~~-------~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  154 (169)
                           ..+...       .-...++++++||++|+||++++.++.....
T Consensus       625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence                 111110       0023468999999999999999988875443

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.55  E-value=4.6e-14  Score=104.69  Aligned_cols=58  Identities=21%  Similarity=0.048  Sum_probs=41.1

Q ss_pred             CCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHH-HHHHHHHhhh
Q 030931           94 NSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD-WLASTLKEMR  157 (169)
Q Consensus        94 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~-~l~~~~~~~~  157 (169)
                      .+|+++++||+|+.+.   .+....+..   .....+++.+||+.+.|+.++.+ .+.+.+++..
T Consensus       214 ~KPvI~VlNK~Dl~~~---~~~~~~l~~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~  272 (318)
T cd01899         214 SKPMVIAANKADIPDA---ENNISKLRL---KYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDS  272 (318)
T ss_pred             CCcEEEEEEHHHccCh---HHHHHHHHh---hCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCC
Confidence            4799999999997532   222222221   12234699999999999999998 6888887643

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.54  E-value=8.9e-14  Score=103.81  Aligned_cols=143  Identities=15%  Similarity=0.086  Sum_probs=100.9

Q ss_pred             ccCCCCCceeeeec-------eeeeeeeeeEEEEEEEEC-CEEEEEEEcCCCCC---------chhhHHhhccCCCEEEE
Q 030931            4 VKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQYK-NVIFTVWDVGGQEK---------LRPLWRHYFNNTDGLIY   66 (169)
Q Consensus         4 ~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~---------~~~~~~~~~~~~~~ii~   66 (169)
                      +=..+|||||+|++       .+..+.|.......+..+ +..+.+.||.|--+         |++... -...||.++.
T Consensus       199 GYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLE-E~~~aDlllh  277 (411)
T COG2262         199 GYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLE-EVKEADLLLH  277 (411)
T ss_pred             eeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHH-HhhcCCEEEE
Confidence            34678999999976       456678888888888886 68999999999432         222222 2457999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931           67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus        67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      |+|++++.....+ +-..+++.+-...++|+++|.||+|+.....   .......   .. + +.+.+||++|+|++.++
T Consensus       278 VVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~---~~-~-~~v~iSA~~~~gl~~L~  348 (411)
T COG2262         278 VVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELER---GS-P-NPVFISAKTGEGLDLLR  348 (411)
T ss_pred             EeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhh---cC-C-CeEEEEeccCcCHHHHH
Confidence            9999998543333 3333444544456799999999999754322   1111100   01 1 48999999999999999


Q ss_pred             HHHHHHHHhh
Q 030931          147 DWLASTLKEM  156 (169)
Q Consensus       147 ~~l~~~~~~~  156 (169)
                      +.|...+...
T Consensus       349 ~~i~~~l~~~  358 (411)
T COG2262         349 ERIIELLSGL  358 (411)
T ss_pred             HHHHHHhhhc
Confidence            9999988854

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.53  E-value=2.6e-14  Score=107.92  Aligned_cols=132  Identities=16%  Similarity=0.174  Sum_probs=98.4

Q ss_pred             eeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030931           24 LVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK  103 (169)
Q Consensus        24 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK  103 (169)
                      |+-.....+.+.+++++|.|||||..|.......+...|++++++|+.+. .+.+.+.-+.+.+.    .+.+.|+|.||
T Consensus        55 TILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~----~gL~PIVVvNK  129 (603)
T COG1217          55 TILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA----LGLKPIVVINK  129 (603)
T ss_pred             EEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH----cCCCcEEEEeC
Confidence            33344455888999999999999999999999999999999999999653 34455555555554    46788999999


Q ss_pred             CCCCCCCCHhHHHhhhCCC-----CCCCceeEEEEeeeccCC----------CHHHHHHHHHHHHHhhhccc
Q 030931          104 QDMKGAMTPMEVCEGLGLF-----DLKNRKWHIQGTCALKGD----------GLYEGLDWLASTLKEMRAAG  160 (169)
Q Consensus       104 ~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~----------gi~~~~~~l~~~~~~~~~~~  160 (169)
                      +|.+++...+.+.+.+.+.     ...+..++++..||..|.          ++..+|+.++++++.+....
T Consensus       130 iDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~  201 (603)
T COG1217         130 IDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDL  201 (603)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCC
Confidence            9998876543333322211     114567899999998875          47789999999888876433

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.53  E-value=5.1e-15  Score=104.85  Aligned_cols=151  Identities=19%  Similarity=0.200  Sum_probs=92.3

Q ss_pred             ccccCCCCCceeeee----ce----eeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCchh-----hHHhhccCCCEEEEE
Q 030931            2 LRVKQPYCTSCTLVK----FY----LLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKLRP-----LWRHYFNNTDGLIYV   67 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~----f~----~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~-----~~~~~~~~~~~ii~v   67 (169)
                      |.|..+|||||+..-    +.    ....||..++...+.+ +...+++||+||+..+..     .....++++.++|+|
T Consensus         4 LmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV   83 (232)
T PF04670_consen    4 LMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYV   83 (232)
T ss_dssp             EEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEE
T ss_pred             EEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEE
Confidence            567899999997763    32    2334777777777765 788999999999986644     367789999999999


Q ss_pred             EECCChhhHHH---HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--------HHhhhCCCCCCCceeEEEEeee
Q 030931           68 VDSLDRERIGK---AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME--------VCEGLGLFDLKNRKWHIQGTCA  136 (169)
Q Consensus        68 ~d~~~~~~~~~---~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~Sa  136 (169)
                      +|+.+.+-.+.   ....+..+.+.  .++..+.++..|+|+.......+        +.+...-  .....+.++.||.
T Consensus        84 ~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~--~~~~~~~~~~TSI  159 (232)
T PF04670_consen   84 FDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELED--LGIEDITFFLTSI  159 (232)
T ss_dssp             EETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHH--TT-TSEEEEEE-T
T ss_pred             EEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhh--ccccceEEEeccC
Confidence            99974442222   23334444332  36899999999999864322111        1111110  0111467888888


Q ss_pred             ccCCCHHHHHHHHHHHHHhhh
Q 030931          137 LKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       137 ~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      .+. .+.+.+-.++..+....
T Consensus       160 ~D~-Sly~A~S~Ivq~LiP~~  179 (232)
T PF04670_consen  160 WDE-SLYEAWSKIVQKLIPNL  179 (232)
T ss_dssp             TST-HHHHHHHHHHHTTSTTH
T ss_pred             cCc-HHHHHHHHHHHHHcccH
Confidence            874 68888888887766543

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>CHL00071 tufA elongation factor Tu

Probab=99.53  E-value=5.8e-14  Score=107.95  Aligned_cols=136  Identities=18%  Similarity=0.098  Sum_probs=86.9

Q ss_pred             ccccCCCCCceeeeeceee-----------------------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931            2 LRVKQPYCTSCTLVKFYLL-----------------------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF   58 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-----------------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   58 (169)
                      +.+...+|||||++++...                       ...|+......+..++..+.+.||||+..|.......+
T Consensus        17 i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~   96 (409)
T CHL00071         17 TIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGA   96 (409)
T ss_pred             EECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHHHHHHHH
Confidence            4567899999999987321                       22233333344555788899999999988877777778


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-----hHHHhhhCCCCCCCceeEEE
Q 030931           59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-----MEVCEGLGLFDLKNRKWHIQ  132 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~~  132 (169)
                      ..+|++++|+|+..... ......+..+..    .++| ++++.||+|+.+....     .++...+.........++++
T Consensus        97 ~~~D~~ilVvda~~g~~-~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii  171 (409)
T CHL00071         97 AQMDGAILVVSAADGPM-PQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIV  171 (409)
T ss_pred             HhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEE
Confidence            89999999999975321 222333333321    2567 7789999998643211     12222222111122347899


Q ss_pred             EeeeccCCCH
Q 030931          133 GTCALKGDGL  142 (169)
Q Consensus       133 ~~Sa~~~~gi  142 (169)
                      ++||.+|.|+
T Consensus       172 ~~Sa~~g~n~  181 (409)
T CHL00071        172 SGSALLALEA  181 (409)
T ss_pred             Ecchhhcccc
Confidence            9999999743

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.52  E-value=1.3e-14  Score=104.29  Aligned_cols=110  Identities=24%  Similarity=0.224  Sum_probs=79.6

Q ss_pred             CCchhhHHhhccCCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCCCC
Q 030931           48 EKLRPLWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-EVCEGLGLFDLK  125 (169)
Q Consensus        48 ~~~~~~~~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~  125 (169)
                      +++..+.+.+++++|++++|||++++. +++.+..|+..+..    .++|+++|+||+||.+..... +..+.+     .
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~   94 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R   94 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence            566777788999999999999999876 89999999876532    479999999999996432211 222222     2


Q ss_pred             CceeEEEEeeeccCCCHHHHHHHHHHHHHhhhccccccccccC
Q 030931          126 NRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSS  168 (169)
Q Consensus       126 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~s  168 (169)
                      ..+++++++||++|.|++++|+.+...+  .-..+.++.|+||
T Consensus        95 ~~g~~v~~~SAktg~gi~eLf~~l~~~~--~~~~G~sgvGKSt  135 (245)
T TIGR00157        95 NIGYQVLMTSSKNQDGLKELIEALQNRI--SVFAGQSGVGKSS  135 (245)
T ss_pred             HCCCeEEEEecCCchhHHHHHhhhcCCE--EEEECCCCCCHHH
Confidence            3456799999999999999998876421  1123455566655

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.52  E-value=7.4e-14  Score=107.27  Aligned_cols=116  Identities=16%  Similarity=0.054  Sum_probs=72.5

Q ss_pred             eeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030931           25 VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ  104 (169)
Q Consensus        25 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~  104 (169)
                      +...+..+..++.++.++|||||++|.......+..+|++++|+|+.....-. ....+. ++...  ...++++++||+
T Consensus        68 id~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~-~~~~~--~~~~iivviNK~  143 (406)
T TIGR02034        68 IDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSY-IASLL--GIRHVVLAVNKM  143 (406)
T ss_pred             eEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHH-HHHHc--CCCcEEEEEEec
Confidence            33444556668889999999999998766667789999999999986542211 111111 11111  234689999999


Q ss_pred             CCCCCCC--HhHHHhhhCC--CCCCCceeEEEEeeeccCCCHHH
Q 030931          105 DMKGAMT--PMEVCEGLGL--FDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus       105 Dl~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      |+.+...  .+++.+.+..  .......++++++||++|+|+.+
T Consensus       144 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       144 DLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            9864321  1112222210  00111245799999999999885

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.51  E-value=9.8e-14  Score=107.53  Aligned_cols=118  Identities=22%  Similarity=0.193  Sum_probs=77.4

Q ss_pred             eeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh---hH---HHHHHHHHHHhcCCCCCCCe
Q 030931           23 LLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RI---GKAKQEFQAIIKDPFMLNSV   96 (169)
Q Consensus        23 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p   96 (169)
                      .|+...+..++++++.+.+.|||||++|.......+..+|++++|+|+++..   .|   ....+.+..+ ..   .++|
T Consensus        71 iTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~---~gi~  146 (446)
T PTZ00141         71 ITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-FT---LGVK  146 (446)
T ss_pred             EeEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HH---cCCC
Confidence            3444556667778999999999999999888888889999999999997532   01   1222222222 11   2555


Q ss_pred             -EEEEEeCCCCCCC----CCH----hHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           97 -ILVFANKQDMKGA----MTP----MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        97 -iivv~nK~Dl~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                       ++++.||+|....    ...    .++...+.........++++++||.+|+|+.+
T Consensus       147 ~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        147 QMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             eEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence             7799999995321    111    23333332222223457899999999999864

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.50  E-value=1.4e-13  Score=106.65  Aligned_cols=116  Identities=16%  Similarity=0.160  Sum_probs=76.8

Q ss_pred             eeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH-------HHHHHHHHHhcCCCCCCC-
Q 030931           24 LVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG-------KAKQEFQAIIKDPFMLNS-   95 (169)
Q Consensus        24 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~-   95 (169)
                      |+...+..+..+++.+++.|+|||++|.......+..+|++|+|+|+++ ..|+       .....+... +.   .++ 
T Consensus        72 Ti~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~-~~---~gi~  146 (447)
T PLN00043         72 TIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLA-FT---LGVK  146 (447)
T ss_pred             eEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHH-HH---cCCC
Confidence            3444455567789999999999999999988889999999999999976 2221       233222222 11   245 


Q ss_pred             eEEEEEeCCCCCCC-CC-------HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           96 VILVFANKQDMKGA-MT-------PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        96 piivv~nK~Dl~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      ++++++||+|+.+. .+       .+++...+.........++++++||.+|+|+.+
T Consensus       147 ~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        147 QMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             cEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            57889999998621 11       222333222111122346899999999999854

>PRK00049 elongation factor Tu; Reviewed

Probab=99.50  E-value=1.8e-13  Score=104.79  Aligned_cols=147  Identities=18%  Similarity=0.099  Sum_probs=92.5

Q ss_pred             ccccCCCCCceeeeecee-----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931            2 LRVKQPYCTSCTLVKFYL-----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF   58 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   58 (169)
                      +.+..++|||||++++..                       ...-|+......+..++..+.+.||||+.+|.......+
T Consensus        17 iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~   96 (396)
T PRK00049         17 TIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGA   96 (396)
T ss_pred             EEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhh
Confidence            356789999999997621                       223344444444555788899999999988877666778


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCCCC-H----hHHHhhhCCCCCCCceeEEE
Q 030931           59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQDMKGAMT-P----MEVCEGLGLFDLKNRKWHIQ  132 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~~  132 (169)
                      ..+|++++|+|+.+... ......+..+..    .+.|.+ +++||+|+.+... .    .++...+..........+++
T Consensus        97 ~~aD~~llVVDa~~g~~-~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv  171 (396)
T PRK00049         97 AQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPII  171 (396)
T ss_pred             ccCCEEEEEEECCCCCc-hHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEE
Confidence            89999999999976422 222233333321    257865 6899999864211 1    12222222111122346799


Q ss_pred             EeeeccCC----------CHHHHHHHHHHHH
Q 030931          133 GTCALKGD----------GLYEGLDWLASTL  153 (169)
Q Consensus       133 ~~Sa~~~~----------gi~~~~~~l~~~~  153 (169)
                      ++||+++.          |+..+++.+...+
T Consensus       172 ~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        172 RGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             EeecccccCCCCcccccccHHHHHHHHHhcC
Confidence            99999875          4566666666544

>PRK12739 elongation factor G; Reviewed

Probab=99.49  E-value=1.8e-13  Score=111.46  Aligned_cols=102  Identities=15%  Similarity=0.120  Sum_probs=76.0

Q ss_pred             ccccCCCCCceeeeecee-------------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931            2 LRVKQPYCTSCTLVKFYL-------------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH   56 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   56 (169)
                      +++..++|||||++++-.                         ...-|+.....++.++++++.++||||+..|...+..
T Consensus        13 iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~   92 (691)
T PRK12739         13 IMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFTIEVER   92 (691)
T ss_pred             EECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHH
Confidence            456889999999998611                         2233444556678889999999999999988888889


Q ss_pred             hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      .++.+|++++|+|+.+...-.. ...+..+..    .++|+++++||+|+.+
T Consensus        93 al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~----~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         93 SLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK----YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence            9999999999999976533222 222333321    3689999999999874

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.48  E-value=8.4e-14  Score=97.17  Aligned_cols=148  Identities=12%  Similarity=0.006  Sum_probs=86.9

Q ss_pred             ccccCCCCCceeeeeceeee-----eeeeeE-EE--E--EEEE-CCEEEEEEEcCCCCCchhhHHh-----hccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF-----LLLVRF-NV--E--KVQY-KNVIFTVWDVGGQEKLRPLWRH-----YFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~-----~~t~~~-~~--~--~~~~-~~~~~~i~D~~G~~~~~~~~~~-----~~~~~~~ii   65 (169)
                      +++..|+|||||+|.+....     .++.+. ..  .  .+.. ....+.+|||||..........     .+.++|.++
T Consensus         6 i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l   85 (197)
T cd04104           6 VTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFI   85 (197)
T ss_pred             EECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccCcCEEE
Confidence            57899999999999874322     222221 11  0  1111 1236899999997653322222     366789988


Q ss_pred             EEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---------HhHHHhhhCCC---CCC---Ccee
Q 030931           66 YVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMT---------PMEVCEGLGLF---DLK---NRKW  129 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---------~~~~~~~~~~~---~~~---~~~~  129 (169)
                      ++.|.    ++.... .+++.+ +..   +.|+++|+||+|+.....         .+++...+...   ...   -...
T Consensus        86 ~v~~~----~~~~~d~~~~~~l-~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p  157 (197)
T cd04104          86 IISST----RFSSNDVKLAKAI-QCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEP  157 (197)
T ss_pred             EEeCC----CCCHHHHHHHHHH-HHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            88532    233333 334433 322   579999999999842111         11111111100   001   1223


Q ss_pred             EEEEeeec--cCCCHHHHHHHHHHHHHhhh
Q 030931          130 HIQGTCAL--KGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       130 ~~~~~Sa~--~~~gi~~~~~~l~~~~~~~~  157 (169)
                      ++|.+|+.  .+.|+..+.+.+...+.+.+
T Consensus       158 ~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~  187 (197)
T cd04104         158 PVFLVSNFDPSDYDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             CEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence            68999998  67999999999999988754

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.48  E-value=8.4e-14  Score=108.66  Aligned_cols=117  Identities=16%  Similarity=0.067  Sum_probs=72.4

Q ss_pred             eeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030931           25 VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ  104 (169)
Q Consensus        25 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~  104 (169)
                      +...+..+..++..+.++|||||+.|.......++.+|++++|+|+.....-.....+  .++...  ...|+++++||+
T Consensus        95 id~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~l--g~~~iIvvvNKi  170 (474)
T PRK05124         95 IDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLL--GIKHLVVAVNKM  170 (474)
T ss_pred             eEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHh--CCCceEEEEEee
Confidence            3344455666788999999999998876666667999999999999653211111111  111111  124789999999


Q ss_pred             CCCCCCC--HhHHHhhhCC--CCCC-CceeEEEEeeeccCCCHHHH
Q 030931          105 DMKGAMT--PMEVCEGLGL--FDLK-NRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus       105 Dl~~~~~--~~~~~~~~~~--~~~~-~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      |+.+...  ..++.+.+..  .... ....+++++||++|+|+.+.
T Consensus       171 D~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        171 DLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             ccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            9864221  1222222210  0001 12467999999999999764

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.47  E-value=4.2e-13  Score=97.63  Aligned_cols=146  Identities=14%  Similarity=0.018  Sum_probs=103.3

Q ss_pred             ccCCCCCceeeeec-------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCc--hh------hHHhhcc-CCCEEEEE
Q 030931            4 VKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKL--RP------LWRHYFN-NTDGLIYV   67 (169)
Q Consensus         4 ~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~--~~------~~~~~~~-~~~~ii~v   67 (169)
                      +-|.+|||||++.+       .+-+++|.++++.+++.+..++|+.||||.-..  ..      ..-..++ =.++++|+
T Consensus       175 G~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~  254 (346)
T COG1084         175 GYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFL  254 (346)
T ss_pred             cCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEE
Confidence            46889999999965       567788999999999999999999999995431  11      1111222 36899999


Q ss_pred             EECCChh--hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931           68 VDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        68 ~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      ||++...  +.+.-..+++++....   +.|+++|.||+|+.+....++....+.    ...+.....+++..+.+++.+
T Consensus       255 ~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~  327 (346)
T COG1084         255 FDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEASVL----EEGGEEPLKISATKGCGLDKL  327 (346)
T ss_pred             EcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHHHH----hhccccccceeeeehhhHHHH
Confidence            9998654  4556666777775544   389999999999875443333333222    122223678899999999888


Q ss_pred             HHHHHHHHHhh
Q 030931          146 LDWLASTLKEM  156 (169)
Q Consensus       146 ~~~l~~~~~~~  156 (169)
                      -..+.....+.
T Consensus       328 ~~~v~~~a~~~  338 (346)
T COG1084         328 REEVRKTALEP  338 (346)
T ss_pred             HHHHHHHhhch
Confidence            77777765554

>PLN03126 Elongation factor Tu; Provisional

Probab=99.47  E-value=4.7e-13  Score=104.27  Aligned_cols=135  Identities=17%  Similarity=0.088  Sum_probs=87.1

Q ss_pred             ccccCCCCCceeeeecee-----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931            2 LRVKQPYCTSCTLVKFYL-----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF   58 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   58 (169)
                      +++..++|||||++++..                       ...-|+......+..++..+.++|+|||+.|.......+
T Consensus        86 iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~  165 (478)
T PLN03126         86 TIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGA  165 (478)
T ss_pred             EECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHHHHH
Confidence            456789999999997631                       111223233444566788999999999999887777778


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCCCCCceeEEE
Q 030931           59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMT-PM----EVCEGLGLFDLKNRKWHIQ  132 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~~  132 (169)
                      ..+|++++|+|+.+... ....+++..+..    .++| +++++||+|+.+... .+    ++...+.........++++
T Consensus       166 ~~aD~ailVVda~~G~~-~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~v  240 (478)
T PLN03126        166 AQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPII  240 (478)
T ss_pred             hhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEE
Confidence            89999999999875422 223333333321    2567 788999999864211 11    2222222111122467899


Q ss_pred             EeeeccCCC
Q 030931          133 GTCALKGDG  141 (169)
Q Consensus       133 ~~Sa~~~~g  141 (169)
                      ++||.++.+
T Consensus       241 p~Sa~~g~n  249 (478)
T PLN03126        241 SGSALLALE  249 (478)
T ss_pred             EEEcccccc
Confidence            999998854

>PLN03127 Elongation factor Tu; Provisional

Probab=99.46  E-value=6.7e-13  Score=102.84  Aligned_cols=148  Identities=15%  Similarity=0.094  Sum_probs=91.7

Q ss_pred             ccccCCCCCceeeeecee-----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931            2 LRVKQPYCTSCTLVKFYL-----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF   58 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   58 (169)
                      +++-.++|||||++++..                       +...|+......++.++..+.+.||||+.+|........
T Consensus        66 iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~  145 (447)
T PLN03127         66 TIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGA  145 (447)
T ss_pred             EECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHH
Confidence            345778999999997621                       022344444455666788999999999998877666667


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-h----HHHhhhCCCCCCCceeEEE
Q 030931           59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-M----EVCEGLGLFDLKNRKWHIQ  132 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~~~~~~~  132 (169)
                      ..+|++++|+|+.+... ....+.+..+ ..   .++| +++++||+|+.+.... +    ++.+.+.........++++
T Consensus       146 ~~aD~allVVda~~g~~-~qt~e~l~~~-~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpii  220 (447)
T PLN03127        146 AQMDGGILVVSAPDGPM-PQTKEHILLA-RQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPII  220 (447)
T ss_pred             hhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEE
Confidence            78999999999865421 2222223322 21   2578 5789999998642111 1    1222221111112346788


Q ss_pred             Eeeec---cCCC-------HHHHHHHHHHHHH
Q 030931          133 GTCAL---KGDG-------LYEGLDWLASTLK  154 (169)
Q Consensus       133 ~~Sa~---~~~g-------i~~~~~~l~~~~~  154 (169)
                      ++||.   +|.|       +.++++.+...+.
T Consensus       221 p~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        221 RGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             EeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            88875   5555       6677777776654

>PRK00007 elongation factor G; Reviewed

Probab=99.45  E-value=6.7e-13  Score=108.09  Aligned_cols=102  Identities=14%  Similarity=0.118  Sum_probs=74.4

Q ss_pred             ccccCCCCCceeeeece-------------------------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931            2 LRVKQPYCTSCTLVKFY-------------------------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH   56 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-------------------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   56 (169)
                      |++..++|||||++++-                         .....|+......+.++++++++.||||+..|......
T Consensus        15 iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~   94 (693)
T PRK00007         15 IMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTIEVER   94 (693)
T ss_pred             EECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHH
Confidence            46788999999999871                         12223444445667889999999999999888777777


Q ss_pred             hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      .++.+|++++|+|......-.. ...+..+.+    .++|+++++||+|+.+
T Consensus        95 al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~  141 (693)
T PRK00007         95 SLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTG  141 (693)
T ss_pred             HHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence            8899999999999875433332 222333322    3678999999999864

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.45  E-value=8.1e-13  Score=90.34  Aligned_cols=143  Identities=19%  Similarity=0.146  Sum_probs=92.1

Q ss_pred             cccCCCCCceeeeece---------eeeeeeeeEEEEEEEECCEEEEEEEcCCC----------CCchhhHHhhcc---C
Q 030931            3 RVKQPYCTSCTLVKFY---------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQ----------EKLRPLWRHYFN---N   60 (169)
Q Consensus         3 ~~~~~~~Ktsll~~f~---------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~~~~~---~   60 (169)
                      .+-..+|||||+|.+.         ..+.-|.-+++..++.+   +.+.|.||-          +....+...|++   +
T Consensus        30 ~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~  106 (200)
T COG0218          30 AGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRAN  106 (200)
T ss_pred             EccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchh
Confidence            3567899999999763         34445555555555444   889999993          333445556665   4


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCCCCCceeEEEEeee
Q 030931           61 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDLKNRKWHIQGTCA  136 (169)
Q Consensus        61 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa  136 (169)
                      ..+++.++|+.....-.+  ..+-+++..   .++|+++++||+|..+....    ..+.+.+.......  ..++..|+
T Consensus       107 L~~vvlliD~r~~~~~~D--~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~--~~~~~~ss  179 (200)
T COG0218         107 LKGVVLLIDARHPPKDLD--REMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDD--QWVVLFSS  179 (200)
T ss_pred             heEEEEEEECCCCCcHHH--HHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCcc--ceEEEEec
Confidence            578889999865443322  222233322   38999999999998764332    33444444332111  12888999


Q ss_pred             ccCCCHHHHHHHHHHHHHh
Q 030931          137 LKGDGLYEGLDWLASTLKE  155 (169)
Q Consensus       137 ~~~~gi~~~~~~l~~~~~~  155 (169)
                      .++.|++++...|.+.+..
T Consensus       180 ~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         180 LKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             ccccCHHHHHHHHHHHhhc
Confidence            9999999999888876654

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.45  E-value=1.1e-12  Score=94.65  Aligned_cols=149  Identities=15%  Similarity=0.050  Sum_probs=93.7

Q ss_pred             ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCC------chh------hHHhhccCC
Q 030931            2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEK------LRP------LWRHYFNNT   61 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~------~~~------~~~~~~~~~   61 (169)
                      +++.+..|||||.|+.....        ..|..-....+..+...+.++||||.-.      ...      ........|
T Consensus        77 vIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~A  156 (379)
T KOG1423|consen   77 VIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNA  156 (379)
T ss_pred             EEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhC
Confidence            57799999999999763322        2222223333455899999999999322      111      122356789


Q ss_pred             CEEEEEEECCChhhH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-----------------HhHHHhhhCCC
Q 030931           62 DGLIYVVDSLDRERI--GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-----------------PMEVCEGLGLF  122 (169)
Q Consensus        62 ~~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-----------------~~~~~~~~~~~  122 (169)
                      |.++.|+|+++....  ..+...++.+      ..+|-++|.||.|...+..                 ..++.+.+...
T Consensus       157 D~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~  230 (379)
T KOG1423|consen  157 DCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDV  230 (379)
T ss_pred             CEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccC
Confidence            999999999863222  1222233333      4789999999999764311                 12222222211


Q ss_pred             C-----CCCcee----EEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          123 D-----LKNRKW----HIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       123 ~-----~~~~~~----~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      .     ....+|    .+|.+||++|+||+++-++++.++...
T Consensus       231 p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g  273 (379)
T KOG1423|consen  231 PSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG  273 (379)
T ss_pred             CcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence            1     011222    489999999999999999999877654

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.41  E-value=4.5e-13  Score=108.21  Aligned_cols=112  Identities=17%  Similarity=0.050  Sum_probs=69.3

Q ss_pred             EEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           29 VEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        29 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      +..+..++.++.++||||++.|.......+..+|++++|+|+.....- .....+..+ ...  ...|+++++||+|+.+
T Consensus        96 ~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~-~~~--~~~~iivvvNK~D~~~  171 (632)
T PRK05506         96 YRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIA-SLL--GIRHVVLAVNKMDLVD  171 (632)
T ss_pred             eeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHH-HHh--CCCeEEEEEEeccccc
Confidence            345666788999999999998876666678899999999999653211 111111111 111  2368999999999864


Q ss_pred             CCC--HhHHHhhhCC--CCCCCceeEEEEeeeccCCCHHH
Q 030931          109 AMT--PMEVCEGLGL--FDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus       109 ~~~--~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      ...  ..++...+..  ........+++++||++|.|+.+
T Consensus       172 ~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        172 YDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             chhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            211  1222222210  00011235689999999999874

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.41  E-value=1.2e-12  Score=95.79  Aligned_cols=152  Identities=22%  Similarity=0.128  Sum_probs=97.8

Q ss_pred             ccccCCCCCceeeeec-------eeeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCc-------hhhHHhhccCCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKL-------RPLWRHYFNNTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~~ii~   66 (169)
                      |++=|..|||||++.+       .+.+++|+-.+...+.. ....|.+-|.||.-.-       ....-..+..+.++++
T Consensus       164 LVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~h  243 (369)
T COG0536         164 LVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLH  243 (369)
T ss_pred             cccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEE
Confidence            3456889999999965       34445555555555554 5666999999994321       1122345678999999


Q ss_pred             EEECCChh---hHHHHHHHHHHHhc-CCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeE-EEEeeeccCC
Q 030931           67 VVDSLDRE---RIGKAKQEFQAIIK-DPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWH-IQGTCALKGD  140 (169)
Q Consensus        67 v~d~~~~~---~~~~~~~~~~~~~~-~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~  140 (169)
                      |+|++..+   ..++......++.. ...+.+.|.++|+||+|+.... ..+...+.+.    ...++. .+.+||.+++
T Consensus       244 viD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~----~~~~~~~~~~ISa~t~~  319 (369)
T COG0536         244 VIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALA----EALGWEVFYLISALTRE  319 (369)
T ss_pred             EEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHH----HhcCCCcceeeehhccc
Confidence            99998544   24443333333332 3455689999999999965332 1222222221    112222 1129999999


Q ss_pred             CHHHHHHHHHHHHHhhh
Q 030931          141 GLYEGLDWLASTLKEMR  157 (169)
Q Consensus       141 gi~~~~~~l~~~~~~~~  157 (169)
                      |++++...+.+.+.+..
T Consensus       320 g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         320 GLDELLRALAELLEETK  336 (369)
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999888775

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=2.7e-12  Score=97.69  Aligned_cols=164  Identities=14%  Similarity=0.008  Sum_probs=102.4

Q ss_pred             ccccCCCCCceeeeece--------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCC-chh--------hHHhhccCCCEE
Q 030931            2 LRVKQPYCTSCTLVKFY--------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEK-LRP--------LWRHYFNNTDGL   64 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~--------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~-~~~--------~~~~~~~~~~~i   64 (169)
                      |++.+.+|||||+|.+.        +....|-..-...++..++++.+.||+|..+ -..        .....++.||.+
T Consensus       273 IvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi  352 (531)
T KOG1191|consen  273 IVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVI  352 (531)
T ss_pred             EEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEE
Confidence            56799999999999874        3444444444456778999999999999655 111        123456789999


Q ss_pred             EEEEEC--CChhhHHHHHHHHHHHhc-----CCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCCCCCceeEEEEeee
Q 030931           65 IYVVDS--LDRERIGKAKQEFQAIIK-----DPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCA  136 (169)
Q Consensus        65 i~v~d~--~~~~~~~~~~~~~~~~~~-----~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa  136 (169)
                      ++|+|+  ++.++-..+...+...-.     .......|++++.||.|+....+. ......+.........-...++|+
T Consensus       353 ~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~  432 (531)
T KOG1191|consen  353 LLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSC  432 (531)
T ss_pred             EEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccceEEEeee
Confidence            999999  333333333333332211     122345899999999998654211 110001111111112223566999


Q ss_pred             ccCCCHHHHHHHHHHHHHhhhcccccccc
Q 030931          137 LKGDGLYEGLDWLASTLKEMRAAGYSSVG  165 (169)
Q Consensus       137 ~~~~gi~~~~~~l~~~~~~~~~~~~~~~~  165 (169)
                      ++++|++++...+...+.....+...++.
T Consensus       433 ~tkeg~~~L~~all~~~~~~~~~~~s~~~  461 (531)
T KOG1191|consen  433 TTKEGCERLSTALLNIVERLVVSPHSAPP  461 (531)
T ss_pred             chhhhHHHHHHHHHHHHHHhhcCCCCCch
Confidence            99999999999999888777654444433

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.40  E-value=1.5e-12  Score=83.24  Aligned_cols=96  Identities=18%  Similarity=0.153  Sum_probs=65.2

Q ss_pred             ccccCCCCCceeeeecee--------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchh---------hHHhhccCCCEE
Q 030931            2 LRVKQPYCTSCTLVKFYL--------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP---------LWRHYFNNTDGL   64 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~--------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~~~~~i   64 (169)
                      |++.+++|||||++.+..        ....|.......+...+..+.++||||...-..         .....+..+|++
T Consensus         4 iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~i   83 (116)
T PF01926_consen    4 IIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLI   83 (116)
T ss_dssp             EEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEE
T ss_pred             EECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEE
Confidence            678999999999997733        223344455566777899999999999654211         122334789999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030931           65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK  103 (169)
Q Consensus        65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK  103 (169)
                      ++|+|.+++.. +...+.++.+ +    .+.|+++|+||
T Consensus        84 i~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK  116 (116)
T PF01926_consen   84 IYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK  116 (116)
T ss_dssp             EEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred             EEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence            99999876322 2222333333 2    47999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.37  E-value=4.8e-12  Score=92.00  Aligned_cols=142  Identities=19%  Similarity=0.079  Sum_probs=95.6

Q ss_pred             ccCCCCCceeeeece-------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCc-------hhhHHhhccCCCEEEEEEE
Q 030931            4 VKQPYCTSCTLVKFY-------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKL-------RPLWRHYFNNTDGLIYVVD   69 (169)
Q Consensus         4 ~~~~~~Ktsll~~f~-------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~~ii~v~d   69 (169)
                      +=|-+|||||+++++       .-.++|.......+++++..+|+.|+||.-.-       ....-...+.||.+++|+|
T Consensus        70 GfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld  149 (365)
T COG1163          70 GFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLD  149 (365)
T ss_pred             cCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEe
Confidence            348899999999873       33455555555668889999999999984322       1234456789999999999


Q ss_pred             CCChhh-HHHHHHHHH----------------------------------------HHhcC-------------------
Q 030931           70 SLDRER-IGKAKQEFQ----------------------------------------AIIKD-------------------   89 (169)
Q Consensus        70 ~~~~~~-~~~~~~~~~----------------------------------------~~~~~-------------------   89 (169)
                      +..... .+.+.+.+.                                        .++++                   
T Consensus       150 ~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~  229 (365)
T COG1163         150 VFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDL  229 (365)
T ss_pred             cCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHH
Confidence            975433 222222111                                        11111                   


Q ss_pred             -----CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931           90 -----PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE  155 (169)
Q Consensus        90 -----~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  155 (169)
                           .+..-+|.+.|.||+|+...   +++.......       +++.+||.++.|++++.+.+.+.+.-
T Consensus       230 id~l~~nrvY~p~l~v~NKiD~~~~---e~~~~l~~~~-------~~v~isa~~~~nld~L~e~i~~~L~l  290 (365)
T COG1163         230 IDALEGNRVYKPALYVVNKIDLPGL---EELERLARKP-------NSVPISAKKGINLDELKERIWDVLGL  290 (365)
T ss_pred             HHHHhhcceeeeeEEEEecccccCH---HHHHHHHhcc-------ceEEEecccCCCHHHHHHHHHHhhCe
Confidence                 11124799999999998753   3333322211       48999999999999999999987654

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.35  E-value=3.7e-12  Score=88.81  Aligned_cols=154  Identities=14%  Similarity=-0.032  Sum_probs=92.5

Q ss_pred             ccccCCCCCceeeeeceee---------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchh--------h---HHhhccCC
Q 030931            2 LRVKQPYCTSCTLVKFYLL---------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP--------L---WRHYFNNT   61 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~---------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~---~~~~~~~~   61 (169)
                      |++++|+|||||+|.+...         ...|..........++..+.++||||-.....        +   ......++
T Consensus         5 lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~   84 (196)
T cd01852           5 LVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGP   84 (196)
T ss_pred             EECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCC
Confidence            6789999999999976221         13344555566667889999999999654321        1   11224578


Q ss_pred             CEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCCCCCceeEEEEee--
Q 030931           62 DGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---LFDLKNRKWHIQGTC--  135 (169)
Q Consensus        62 ~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~S--  135 (169)
                      |++++|+|+.+.. ....+.+++.+.....  .-.+++++.|+.|.......++......   ....+.++-.|+..+  
T Consensus        85 ~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~  162 (196)
T cd01852          85 HAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNK  162 (196)
T ss_pred             EEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCC
Confidence            9999999987621 2233344555543321  1258899999999654332222111110   000122222343333  


Q ss_pred             ---eccCCCHHHHHHHHHHHHHhhh
Q 030931          136 ---ALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       136 ---a~~~~gi~~~~~~l~~~~~~~~  157 (169)
                         +..+.++.++++.+.+.+.+..
T Consensus       163 ~~~~~~~~q~~~Ll~~i~~~~~~~~  187 (196)
T cd01852         163 AKGEEQEQQVKELLAKVESMVKENG  187 (196)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcC
Confidence               5667889999999988888744

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.32  E-value=1.1e-12  Score=99.92  Aligned_cols=152  Identities=14%  Similarity=0.083  Sum_probs=105.3

Q ss_pred             ccCCCCCceeeeec-------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHH--------h-hccCCCEEEEE
Q 030931            4 VKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWR--------H-YFNNTDGLIYV   67 (169)
Q Consensus         4 ~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~-~~~~~~~ii~v   67 (169)
                      +-+.+||||+++..       .+..++|.++-+.++++.-..+++.||||....--.-.        . ..+=-.+++|+
T Consensus       175 G~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYf  254 (620)
T KOG1490|consen  175 GYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYF  254 (620)
T ss_pred             cCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheee
Confidence            47899999999865       45667777777788888888999999999554211100        0 11123678999


Q ss_pred             EECCChh--hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931           68 VDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        68 ~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      .|++...  +...-.++++.+..  ...+.|+|+|+||+|+....+..+-...+-.......+++++++|+.+.+|+.++
T Consensus       255 mDLSe~CGySva~QvkLfhsIKp--LFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~V  332 (620)
T KOG1490|consen  255 MDLSEMCGYSVAAQVKLYHSIKP--LFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDV  332 (620)
T ss_pred             eechhhhCCCHHHHHHHHHHhHH--HhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeH
Confidence            9998654  44555566766633  3468999999999998665443322222221222344578999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030931          146 LDWLASTLKEMR  157 (169)
Q Consensus       146 ~~~l~~~~~~~~  157 (169)
                      ....|+.+...+
T Consensus       333 rt~ACe~LLa~R  344 (620)
T KOG1490|consen  333 RTTACEALLAAR  344 (620)
T ss_pred             HHHHHHHHHHHH
Confidence            999998777654

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.31  E-value=1.8e-11  Score=93.52  Aligned_cols=56  Identities=16%  Similarity=0.035  Sum_probs=38.3

Q ss_pred             CCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH-HHHHHHHHHHhh
Q 030931           94 NSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE-GLDWLASTLKEM  156 (169)
Q Consensus        94 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~-~~~~l~~~~~~~  156 (169)
                      .+|+++|+||.|+....  ..+......     ....++.+||+.+.++.+ +.+.+.+.+...
T Consensus       217 ~KPvI~VlNK~D~~~~~--~~l~~i~~~-----~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~  273 (396)
T PRK09602        217 SKPMVIAANKADLPPAE--ENIERLKEE-----KYYIVVPTSAEAELALRRAAKAGLIDYIPGD  273 (396)
T ss_pred             CCCEEEEEEchhcccch--HHHHHHHhc-----CCCcEEEEcchhhhhHHHHHHHhHHhhCCCC
Confidence            48999999999975321  112222211     123489999999999999 777777766554

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.29  E-value=4.1e-11  Score=89.01  Aligned_cols=137  Identities=23%  Similarity=0.362  Sum_probs=106.7

Q ss_pred             eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHhcCC
Q 030931           21 FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDP   90 (169)
Q Consensus        21 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~   90 (169)
                      ..||.|+....+..++.++.+.|++||..-+.-|.++|.+++++|||+++++          .+++....++++.+++..
T Consensus       179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~  258 (354)
T KOG0082|consen  179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK  258 (354)
T ss_pred             ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence            4678888889999999999999999999888999999999999999999984          235667778999999988


Q ss_pred             CCCCCeEEEEEeCCCCCCC-----------------CCHhHHHh----hhC-CCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931           91 FMLNSVILVFANKQDMKGA-----------------MTPMEVCE----GLG-LFDLKNRKWHIQGTCALKGDGLYEGLDW  148 (169)
Q Consensus        91 ~~~~~piivv~nK~Dl~~~-----------------~~~~~~~~----~~~-~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  148 (169)
                      ...+.+++++.||.|+...                 .+.++...    .+. +.....+.+.+..++|.+..+|..+|+.
T Consensus       259 ~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~a  338 (354)
T KOG0082|consen  259 WFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDA  338 (354)
T ss_pred             ccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHH
Confidence            8889999999999998531                 01111111    111 0011224556788899999999999999


Q ss_pred             HHHHHHhhh
Q 030931          149 LASTLKEMR  157 (169)
Q Consensus       149 l~~~~~~~~  157 (169)
                      +.+.+....
T Consensus       339 v~d~Ii~~n  347 (354)
T KOG0082|consen  339 VTDTIIQNN  347 (354)
T ss_pred             HHHHHHHHH
Confidence            999887764

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=9.2e-12  Score=93.21  Aligned_cols=118  Identities=19%  Similarity=0.191  Sum_probs=78.6

Q ss_pred             eeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh---hH---HHHHH--HHHHHhcCCCCC
Q 030931           22 LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RI---GKAKQ--EFQAIIKDPFML   93 (169)
Q Consensus        22 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~---~~~~~--~~~~~~~~~~~~   93 (169)
                      .-|+...+..++.+.+.+.|.|+|||..|-...-.-..+||++|+|+|+.+.+   .|   ...++  ++...+     .
T Consensus        70 GvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-----G  144 (428)
T COG5256          70 GVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-----G  144 (428)
T ss_pred             ceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-----C
Confidence            44555666777778999999999999988877777788999999999997653   11   11111  122222     2


Q ss_pred             CCeEEEEEeCCCCCCCCC--HhH----HHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           94 NSVILVFANKQDMKGAMT--PME----VCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        94 ~~piivv~nK~Dl~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      -..++++.||+|+.+-..  .++    +...+.........++|+++||.+|.|+.+
T Consensus       145 i~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         145 IKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             CceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            457999999999875211  122    222111111122357899999999999875

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.25  E-value=2.3e-11  Score=94.35  Aligned_cols=115  Identities=10%  Similarity=0.022  Sum_probs=76.1

Q ss_pred             EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--
Q 030931           37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME--  114 (169)
Q Consensus        37 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--  114 (169)
                      ..+.+.|+|||+.|.......+..+|++++|+|+.+........+.+. ++...  .-.|+++|.||+|+.+....++  
T Consensus       117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~~~~~~~~  193 (460)
T PTZ00327        117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKEAQAQDQY  193 (460)
T ss_pred             ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCHHHHHHHH
Confidence            478999999999987777777889999999999976311122222222 11111  2357899999999864322222  


Q ss_pred             --HHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          115 --VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       115 --~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                        +.+.+...  ....++++++||++|.|++.+++.|...+...
T Consensus       194 ~ei~~~l~~~--~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~  235 (460)
T PTZ00327        194 EEIRNFVKGT--IADNAPIIPISAQLKYNIDVVLEYICTQIPIP  235 (460)
T ss_pred             HHHHHHHHhh--ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence              22211110  12356899999999999999999998766543

>cd01855 YqeH YqeH

Probab=99.25  E-value=1.2e-11  Score=85.90  Aligned_cols=112  Identities=19%  Similarity=0.097  Sum_probs=70.6

Q ss_pred             chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhh---CCCCCC
Q 030931           50 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGL---GLFDLK  125 (169)
Q Consensus        50 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~---~~~~~~  125 (169)
                      ++.++..+++.+|++++|+|+++...-     |...+...  ..+.|+++|+||+|+.+... ........   ......
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence            577888899999999999999875311     11122111  14689999999999864322 12121111   000001


Q ss_pred             CceeEEEEeeeccCCCHHHHHHHHHHHHHhhhc---cccccccccC
Q 030931          126 NRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA---AGYSSVGTSS  168 (169)
Q Consensus       126 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~---~~~~~~~~~s  168 (169)
                      ....+++++||++++|++++++++...+.....   -+....|++|
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~~nvGKSt  142 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGATNVGKST  142 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcCCCCCHHH
Confidence            111248999999999999999999988754322   2455566665

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=8.4e-11  Score=88.72  Aligned_cols=143  Identities=13%  Similarity=-0.011  Sum_probs=100.8

Q ss_pred             CCCCceeeeec----------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931            7 PYCTSCTLVKF----------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI   76 (169)
Q Consensus         7 ~~~Ktsll~~f----------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~   76 (169)
                      .=|||||++.+          ..+...|+...+...+.++..+.+.|+||++++-...-..+...|.+++|+|.++--.-
T Consensus        10 dHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~   89 (447)
T COG3276          10 DHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMA   89 (447)
T ss_pred             eccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcch
Confidence            35899999965          23556677788888888888999999999999887777777899999999999542211


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931           77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK  154 (169)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  154 (169)
                      .. .+.+ .+++.  ..-...++|+||+|..+....++..+...... .....+++.+|+++|+||+++.+.+...+.
T Consensus        90 qt-gEhL-~iLdl--lgi~~giivltk~D~~d~~r~e~~i~~Il~~l-~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276          90 QT-GEHL-LILDL--LGIKNGIIVLTKADRVDEARIEQKIKQILADL-SLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             hh-HHHH-HHHHh--cCCCceEEEEeccccccHHHHHHHHHHHHhhc-ccccccccccccccCCCHHHHHHHHHHhhh
Confidence            11 1111 12221  12345799999999976544444433332221 134456899999999999999999999884

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=8.2e-12  Score=94.00  Aligned_cols=114  Identities=18%  Similarity=0.166  Sum_probs=81.6

Q ss_pred             ccCCCCCceeeeec-----------------------------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhH
Q 030931            4 VKQPYCTSCTLVKF-----------------------------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLW   54 (169)
Q Consensus         4 ~~~~~~Ktsll~~f-----------------------------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   54 (169)
                      --+..|||||-.++                             ..+..-++...+.++++.+..+++.|||||+.|..-.
T Consensus        19 SHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDT   98 (528)
T COG4108          19 SHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDT   98 (528)
T ss_pred             ecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccccchhH
Confidence            35789999998853                             1222333445567788899999999999999999988


Q ss_pred             HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCC
Q 030931           55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLF  122 (169)
Q Consensus        55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~  122 (169)
                      ...+.-+|.+++|+|+...-.- ...+    +.+.+.++++||+-++||.|.....+   .+|+++.+++.
T Consensus        99 YRtLtAvDsAvMVIDaAKGiE~-qT~K----LfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~  164 (528)
T COG4108          99 YRTLTAVDSAVMVIDAAKGIEP-QTLK----LFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQ  164 (528)
T ss_pred             HHHHHhhheeeEEEecccCccH-HHHH----HHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcc
Confidence            8889999999999999642111 1222    22334557999999999999865433   35666666643

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.23  E-value=3.4e-11  Score=88.53  Aligned_cols=119  Identities=15%  Similarity=0.125  Sum_probs=80.0

Q ss_pred             eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHH--HHHHHhcCCCCCCCeE
Q 030931           20 LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ--EFQAIIKDPFMLNSVI   97 (169)
Q Consensus        20 ~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~pi   97 (169)
                      ++.-|+.+-+..|...+.+|.|-|||||+.|......-...||+.|+++|+.. .-.++.+.  ++..++.     -..+
T Consensus        69 EQGITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~-Gvl~QTrRHs~I~sLLG-----Irhv  142 (431)
T COG2895          69 EQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK-GVLEQTRRHSFIASLLG-----IRHV  142 (431)
T ss_pred             hcCceEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch-hhHHHhHHHHHHHHHhC-----CcEE
Confidence            34556667777788899999999999999988777777888999999999832 11222221  2333332     3579


Q ss_pred             EEEEeCCCCCCCCC--HhHHHhhhCCC--CCCCceeEEEEeeeccCCCHHH
Q 030931           98 LVFANKQDMKGAMT--PMEVCEGLGLF--DLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        98 ivv~nK~Dl~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      +++.||+||.+-..  .+++...+...  .+.-....++++||..|.|+-.
T Consensus       143 vvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         143 VVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             EEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            99999999986432  12232222211  1122334799999999999754

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.22  E-value=1.4e-11  Score=100.72  Aligned_cols=102  Identities=13%  Similarity=0.037  Sum_probs=71.6

Q ss_pred             ccccCCCCCceeeeecee----------------e-------eeeeeeEEEE----EEEECCEEEEEEEcCCCCCchhhH
Q 030931            2 LRVKQPYCTSCTLVKFYL----------------L-------FLLLVRFNVE----KVQYKNVIFTVWDVGGQEKLRPLW   54 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~----------------~-------~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~   54 (169)
                      +++..++|||||++++..                +       +..|+.....    .+++.++.+.+|||||+..|....
T Consensus        24 ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~  103 (720)
T TIGR00490        24 IVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDV  103 (720)
T ss_pred             EEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccHHHH
Confidence            466889999999998621                1       2224443222    245678999999999999998888


Q ss_pred             HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      ...++.+|++++|+|+.+........ .+....+    .+.|+++++||+|...
T Consensus       104 ~~al~~aD~~llVvda~~g~~~~t~~-~~~~~~~----~~~p~ivviNKiD~~~  152 (720)
T TIGR00490       104 TRAMRAVDGAIVVVCAVEGVMPQTET-VLRQALK----ENVKPVLFINKVDRLI  152 (720)
T ss_pred             HHHHHhcCEEEEEEecCCCCCccHHH-HHHHHHH----cCCCEEEEEEChhccc
Confidence            88999999999999997632222222 2222212    3568889999999853

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK12289 GTPase RsgA; Reviewed

Probab=99.22  E-value=1.8e-11  Score=92.00  Aligned_cols=105  Identities=20%  Similarity=0.139  Sum_probs=72.1

Q ss_pred             HHhhccCCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEE
Q 030931           54 WRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQ  132 (169)
Q Consensus        54 ~~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (169)
                      ....++++|++++|+|+.++. ....+..|+....    ..++|+++|+||+|+.+........+.+     ...+++++
T Consensus        83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~-----~~~g~~v~  153 (352)
T PRK12289         83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRL-----QQWGYQPL  153 (352)
T ss_pred             echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHH-----HhcCCeEE
Confidence            344578999999999998764 4445566666552    2478999999999996432122222222     23345789


Q ss_pred             EeeeccCCCHHHHHHHHHHHHHhhhccccccccccCC
Q 030931          133 GTCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF  169 (169)
Q Consensus       133 ~~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~s~  169 (169)
                      ++||+++.|++++++.+...+  .-..+.++.|+||+
T Consensus       154 ~iSA~tg~GI~eL~~~L~~ki--~v~iG~SgVGKSSL  188 (352)
T PRK12289        154 FISVETGIGLEALLEQLRNKI--TVVAGPSGVGKSSL  188 (352)
T ss_pred             EEEcCCCCCHHHHhhhhccce--EEEEeCCCCCHHHH
Confidence            999999999999999887543  23345677777763

>cd01850 CDC_Septin CDC/Septin

Probab=99.20  E-value=2.9e-11  Score=88.42  Aligned_cols=102  Identities=13%  Similarity=0.134  Sum_probs=61.5

Q ss_pred             CccccCCCCCceeeeeceee---------------eeeeeeEEEEE--EEECC--EEEEEEEcCCCCCchh---hH----
Q 030931            1 MLRVKQPYCTSCTLVKFYLL---------------FLLLVRFNVEK--VQYKN--VIFTVWDVGGQEKLRP---LW----   54 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~---------------~~~t~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~---~~----   54 (169)
                      ||.+..|+|||||++++...               ..+|..+....  +...+  +++.+|||||-.....   .|    
T Consensus         8 ~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~   87 (276)
T cd01850           8 MVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIV   87 (276)
T ss_pred             EEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHH
Confidence            57789999999999976111               34455544433  33333  6799999999433211   01    


Q ss_pred             -------------------Hhhcc--CCCEEEEEEECCChhhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           55 -------------------RHYFN--NTDGLIYVVDSLDRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        55 -------------------~~~~~--~~~~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                                         ...+.  .+|+++++++.+... .... .+.++.+.     ...|+++|+||+|+..
T Consensus        88 ~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~  157 (276)
T cd01850          88 DYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS-----KRVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh-----ccCCEEEEEECCCcCC
Confidence                               01222  467888888876422 1111 23333332     2589999999999854

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01859 MJ1464 MJ1464

Probab=99.16  E-value=8.8e-11  Score=78.95  Aligned_cols=95  Identities=16%  Similarity=0.122  Sum_probs=62.8

Q ss_pred             hhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeE
Q 030931           51 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWH  130 (169)
Q Consensus        51 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  130 (169)
                      +.+..++++++|++++|+|++++..... .. +...+..   .+.|+++|+||+|+.+.....+... +    ....+.+
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~-l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~-~----~~~~~~~   72 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS-RK-LERYVLE---LGKKLLIVLNKADLVPKEVLEKWKS-I----KESEGIP   72 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC-HH-HHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHH-H----HHhCCCc
Confidence            4567788889999999999976543221 11 2222221   3689999999999853211111111 1    0112346


Q ss_pred             EEEeeeccCCCHHHHHHHHHHHHHh
Q 030931          131 IQGTCALKGDGLYEGLDWLASTLKE  155 (169)
Q Consensus       131 ~~~~Sa~~~~gi~~~~~~l~~~~~~  155 (169)
                      ++++||+++.|++++++.+.+.+..
T Consensus        73 ~~~iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          73 VVYVSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             EEEEEccccccHHHHHHHHHHHHhh
Confidence            8999999999999999999987754

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.16  E-value=1.2e-11  Score=79.65  Aligned_cols=105  Identities=10%  Similarity=0.017  Sum_probs=73.0

Q ss_pred             ccccCCCCCceeeeeceeeee------eeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhh
Q 030931            2 LRVKQPYCTSCTLVKFYLLFL------LLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER   75 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~   75 (169)
                      +++..|+|||+|+.||.....      +|++                       +......+.+.+++++.||+.++.++
T Consensus         5 ~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~~~~s   61 (124)
T smart00010        5 GIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVDDRDS   61 (124)
T ss_pred             EECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEccCHHH
Confidence            578999999999998833222      2332                       33344567788999999999999988


Q ss_pred             HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHH
Q 030931           76 IGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  143 (169)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  143 (169)
                      ++..  |...++... ..+.|.++++||.|+.+..   ++....        ..+++++|++++.|+.
T Consensus        62 ~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~~---~~~~~~--------~~~~~~~s~~~~~~~~  115 (124)
T smart00010       62 ADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEER---QVATEE--------GLEFAETSAKTPEEGE  115 (124)
T ss_pred             HHHH--hHHHHHhcC-CCCCcEEEEeechhhHhhC---cCCHHH--------HHHHHHHhCCCcchhh
Confidence            8765  766665433 3578999999999984321   111111        1237899999999984

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK13768 GTPase; Provisional

Probab=99.15  E-value=6.8e-11  Score=85.53  Aligned_cols=116  Identities=15%  Similarity=0.101  Sum_probs=72.9

Q ss_pred             EEEEEEEcCCCCCc---hhhHHhhcc---C--CCEEEEEEECCChhhHHHHH--HHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931           37 VIFTVWDVGGQEKL---RPLWRHYFN---N--TDGLIYVVDSLDRERIGKAK--QEFQAIIKDPFMLNSVILVFANKQDM  106 (169)
Q Consensus        37 ~~~~i~D~~G~~~~---~~~~~~~~~---~--~~~ii~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~piivv~nK~Dl  106 (169)
                      ..+.+||+||+...   +..++.+++   .  ++++++++|.....+..+..  .|+......  ..+.|+++|+||+|+
T Consensus        97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~  174 (253)
T PRK13768         97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADL  174 (253)
T ss_pred             CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhh
Confidence            36899999998763   333433333   2  89999999996544333222  222211111  137899999999998


Q ss_pred             CCCCCHhHHHhhhCC--------CC---------------CCC--ceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931          107 KGAMTPMEVCEGLGL--------FD---------------LKN--RKWHIQGTCALKGDGLYEGLDWLASTLK  154 (169)
Q Consensus       107 ~~~~~~~~~~~~~~~--------~~---------------~~~--~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  154 (169)
                      .+....++..+.+..        ..               ...  ...+++++||++++|++++.+++.+.+.
T Consensus       175 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        175 LSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             cCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            765443333332221        00               011  1246899999999999999999988764

>PRK09866 hypothetical protein; Provisional

Probab=99.13  E-value=1.2e-09  Score=86.70  Aligned_cols=127  Identities=13%  Similarity=0.045  Sum_probs=78.9

Q ss_pred             eeeeeEEEEEEEE---CCEEEEEEEcCCCCCc-----hhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCC
Q 030931           22 LLLVRFNVEKVQY---KNVIFTVWDVGGQEKL-----RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFML   93 (169)
Q Consensus        22 ~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~-----~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~   93 (169)
                      .|-+.+.+.++..   ....+.+.||||-..-     .......+..+|+++||+|..+..+..+. ... +.++.. ..
T Consensus       212 ~p~iev~f~hl~g~l~~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIl-k~Lkk~-~K  288 (741)
T PRK09866        212 IPVIEVEFVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVR-EAILAV-GQ  288 (741)
T ss_pred             CceeeeeeeeccccccccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHH-HHHHhc-CC
Confidence            3555666666543   3567899999997542     22334578999999999999764333321 122 222211 11


Q ss_pred             CCeEEEEEeCCCCCCCCC--HhHHHhhhCCC--CCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           94 NSVILVFANKQDMKGAMT--PMEVCEGLGLF--DLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        94 ~~piivv~nK~Dl~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ..|+++|+||+|+.+...  .+.+.......  ........++++||++|.|++++++.+..
T Consensus       289 ~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        289 SVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             CCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            359999999999864222  33333322100  00111235999999999999999999886

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.13  E-value=1.2e-10  Score=81.10  Aligned_cols=107  Identities=22%  Similarity=0.320  Sum_probs=79.8

Q ss_pred             ccccCCCCCceeeee-c-------eeeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCch-----hhHHhhccCCCEEEEE
Q 030931            2 LRVKQPYCTSCTLVK-F-------YLLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKLR-----PLWRHYFNNTDGLIYV   67 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~-f-------~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~-----~~~~~~~~~~~~ii~v   67 (169)
                      |.++.||||||+=-- |       .....+|+.+...++.+ |...+++||.+||+.+-     ......++..+++++|
T Consensus         9 LMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~v   88 (295)
T KOG3886|consen    9 LMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYV   88 (295)
T ss_pred             EeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeee
Confidence            567999999998652 2       45567888888888888 77999999999998542     2445678999999999


Q ss_pred             EECCChhhHHHH---HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC
Q 030931           68 VDSLDRERIGKA---KQEFQAIIKDPFMLNSVILVFANKQDMKGAM  110 (169)
Q Consensus        68 ~d~~~~~~~~~~---~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  110 (169)
                      ||++..+--.++   .+-++.+++.  .+...++....|+|+....
T Consensus        89 FDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d  132 (295)
T KOG3886|consen   89 FDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQED  132 (295)
T ss_pred             eeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccc
Confidence            999776433332   3334455543  3678899999999997543

>PRK12288 GTPase RsgA; Reviewed

Probab=99.10  E-value=1.9e-10  Score=86.50  Aligned_cols=104  Identities=24%  Similarity=0.216  Sum_probs=73.3

Q ss_pred             ccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeec
Q 030931           58 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL  137 (169)
Q Consensus        58 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  137 (169)
                      ..++|.+++|++..+..++..+..|+....    ..++|+++|+||+|+.+......+......  ....+++++++||+
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~~g~~v~~vSA~  191 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRNIGYRVLMVSSH  191 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHH--HHhCCCeEEEEeCC
Confidence            456999999999988888999888877542    246899999999999643221122221110  12334679999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhhccccccccccCC
Q 030931          138 KGDGLYEGLDWLASTLKEMRAAGYSSVGTSSF  169 (169)
Q Consensus       138 ~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~s~  169 (169)
                      +++|++++++++...+  .-..+.++.|+||+
T Consensus       192 tg~GideL~~~L~~ki--~~~vG~sgVGKSTL  221 (347)
T PRK12288        192 TGEGLEELEAALTGRI--SIFVGQSGVGKSSL  221 (347)
T ss_pred             CCcCHHHHHHHHhhCC--EEEECCCCCCHHHH
Confidence            9999999999987543  23346777777763

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.10  E-value=3.1e-11  Score=86.37  Aligned_cols=112  Identities=14%  Similarity=0.075  Sum_probs=58.6

Q ss_pred             EEEEEEcCCCCCchhhHHhhc--------cCCCEEEEEEECCChh---hHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCC
Q 030931           38 IFTVWDVGGQEKLRPLWRHYF--------NNTDGLIYVVDSLDRE---RIGKAKQ-EFQAIIKDPFMLNSVILVFANKQD  105 (169)
Q Consensus        38 ~~~i~D~~G~~~~~~~~~~~~--------~~~~~ii~v~d~~~~~---~~~~~~~-~~~~~~~~~~~~~~piivv~nK~D  105 (169)
                      .+.++|||||.++...|...-        ...-++++++|.....   .|-...- -+.-+++    -+.|.+.|.||+|
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~----~~lP~vnvlsK~D  167 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR----LELPHVNVLSKID  167 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH----HTSEEEEEE--GG
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh----CCCCEEEeeeccC
Confidence            699999999988766655433        4567889999986433   3322211 1111211    3789999999999


Q ss_pred             CCCCC---------C-----------HhHHHhhhCCCCCCCcee-EEEEeeeccCCCHHHHHHHHHHHH
Q 030931          106 MKGAM---------T-----------PMEVCEGLGLFDLKNRKW-HIQGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus       106 l~~~~---------~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                      +.+..         +           ...+...+.......... .+++.|+.+++|+.+++..+-+++
T Consensus       168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            97511         0           011111111111112223 699999999999999998887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.09  E-value=2.9e-10  Score=87.22  Aligned_cols=132  Identities=21%  Similarity=0.359  Sum_probs=96.6

Q ss_pred             eeeeeeEEEEEEEE-CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHhcC
Q 030931           21 FLLLVRFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKD   89 (169)
Q Consensus        21 ~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~   89 (169)
                      ..+|.|+....+.+ ++..+.++|++|+..-+..|.+++.+++++|||+++++          ..++.+...++..+...
T Consensus       219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~  298 (389)
T PF00503_consen  219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN  298 (389)
T ss_dssp             ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred             cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence            35778888889999 99999999999999889999999999999999999873          24577778889999988


Q ss_pred             CCCCCCeEEEEEeCCCCCC------C--------------CCHhHHHh----hhCCCCCCC---ceeEEEEeeeccCCCH
Q 030931           90 PFMLNSVILVFANKQDMKG------A--------------MTPMEVCE----GLGLFDLKN---RKWHIQGTCALKGDGL  142 (169)
Q Consensus        90 ~~~~~~piivv~nK~Dl~~------~--------------~~~~~~~~----~~~~~~~~~---~~~~~~~~Sa~~~~gi  142 (169)
                      ....+.|++|++||.|+..      .              .+.+.+.+    .+.......   +.+.+..|+|.+..++
T Consensus       299 ~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~  378 (389)
T PF00503_consen  299 PWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENI  378 (389)
T ss_dssp             GGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHH
T ss_pred             cccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHH
Confidence            8788999999999999621      1              11111111    111111111   5567788999999999


Q ss_pred             HHHHHHHHHH
Q 030931          143 YEGLDWLAST  152 (169)
Q Consensus       143 ~~~~~~l~~~  152 (169)
                      ..+|+.+.+.
T Consensus       379 ~~v~~~v~~~  388 (389)
T PF00503_consen  379 RKVFNAVKDI  388 (389)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhcCc
Confidence            9999888764

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.06  E-value=3e-10  Score=83.62  Aligned_cols=103  Identities=20%  Similarity=0.152  Sum_probs=69.6

Q ss_pred             HhhccCCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEE
Q 030931           55 RHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQG  133 (169)
Q Consensus        55 ~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (169)
                      ...++++|.+++|+|+.++. ++..+..|+..+..    .++|+++|+||+|+.+..  +......   .....++++++
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~--~~~~~~~---~~~~~g~~v~~  143 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE--EEELELV---EALALGYPVLA  143 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH--HHHHHHH---HHHhCCCeEEE
Confidence            34588999999999998887 77888888776532    368999999999996431  1111100   01123467999


Q ss_pred             eeeccCCCHHHHHHHHHHHHHhhhccccccccccC
Q 030931          134 TCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSS  168 (169)
Q Consensus       134 ~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~s  168 (169)
                      +||+++.|+++++..+....  .--.+....|++|
T Consensus       144 vSA~~g~gi~~L~~~L~~k~--~~~~G~sg~GKST  176 (287)
T cd01854         144 VSAKTGEGLDELREYLKGKT--SVLVGQSGVGKST  176 (287)
T ss_pred             EECCCCccHHHHHhhhccce--EEEECCCCCCHHH
Confidence            99999999999988876411  1122455555554

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.06  E-value=2.4e-10  Score=72.16  Aligned_cols=133  Identities=18%  Similarity=0.128  Sum_probs=84.3

Q ss_pred             CccccCCCCCceeeeeceee---eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhH----HhhccCCCEEEEEEECCCh
Q 030931            1 MLRVKQPYCTSCTLVKFYLL---FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLW----RHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~---~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----~~~~~~~~~ii~v~d~~~~   73 (169)
                      |+.+..|+|||+|.+.+...   |.-|..+     ++..  =-..||||..--...|    -.....++.+++|-.++++
T Consensus         5 ~~vG~~gcGKTtL~q~L~G~~~lykKTQAv-----e~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~   77 (148)
T COG4917           5 AFVGQVGCGKTTLFQSLYGNDTLYKKTQAV-----EFND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDP   77 (148)
T ss_pred             EEecccccCchhHHHHhhcchhhhccccee-----eccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCc
Confidence            45667899999999987433   3333332     2211  0146999965333333    2235689999999998876


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      ++.-.-     .++   .....|+|-+.+|.|+.+..+..-+...+...  .  .-++|++|+.++.|++++++.+...
T Consensus        78 ~s~f~p-----~f~---~~~~k~vIgvVTK~DLaed~dI~~~~~~L~ea--G--a~~IF~~s~~d~~gv~~l~~~L~~~  144 (148)
T COG4917          78 ESRFPP-----GFL---DIGVKKVIGVVTKADLAEDADISLVKRWLREA--G--AEPIFETSAVDNQGVEELVDYLASL  144 (148)
T ss_pred             cccCCc-----ccc---cccccceEEEEecccccchHhHHHHHHHHHHc--C--CcceEEEeccCcccHHHHHHHHHhh
Confidence            432111     111   11256799999999998644443333333221  1  2359999999999999999988753

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.06  E-value=4.7e-10  Score=92.14  Aligned_cols=101  Identities=13%  Similarity=0.084  Sum_probs=67.5

Q ss_pred             ccccCCCCCceeeeeceee-----------------------eeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhH
Q 030931            2 LRVKQPYCTSCTLVKFYLL-----------------------FLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLW   54 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-----------------------~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~   54 (169)
                      +++-.++|||||+.++-..                       ..-|+......+.+    +++.+++.||||+..|....
T Consensus        25 iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~~~~  104 (731)
T PRK07560         25 IIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFGGDV  104 (731)
T ss_pred             EEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChHHHH
Confidence            3556789999999976110                       00111122222333    57889999999999998888


Q ss_pred             HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      ...++.+|++++|+|+....... ....+....+    .+.|+++++||+|+.
T Consensus       105 ~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~----~~~~~iv~iNK~D~~  152 (731)
T PRK07560        105 TRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR----ERVKPVLFINKVDRL  152 (731)
T ss_pred             HHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH----cCCCeEEEEECchhh
Confidence            88999999999999987643222 2222333222    246789999999975

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.03  E-value=1.6e-09  Score=80.81  Aligned_cols=111  Identities=15%  Similarity=0.115  Sum_probs=70.4

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---  111 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---  111 (169)
                      .++.+.|.||+|...-.   ......||.+++|.+....+.+....   ..++      ...-++|+||+|+.+...   
T Consensus       147 ~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~------E~aDIiVVNKaDl~~~~~a~~  214 (332)
T PRK09435        147 AGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIM------ELADLIVINKADGDNKTAARR  214 (332)
T ss_pred             cCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhh------hhhheEEeehhcccchhHHHH
Confidence            36889999999976322   22566799999997644443333322   1122      222389999999865432   


Q ss_pred             -HhHHHhhhCCCCCC--CceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          112 -PMEVCEGLGLFDLK--NRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       112 -~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                       ..++...+......  ....+++.+||+++.|++++++.+.+.+....
T Consensus       215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~  263 (332)
T PRK09435        215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALT  263 (332)
T ss_pred             HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence             22333333321111  12246999999999999999999998766433

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.02  E-value=5.4e-10  Score=92.94  Aligned_cols=67  Identities=16%  Similarity=0.184  Sum_probs=52.5

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      ++.++++|||||..|.......++.+|++|+|+|+.+.-.... ...+..+..    .++|+++++||+|+.
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence            6889999999999999888888999999999999976433222 222333322    378999999999986

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.02  E-value=1.4e-10  Score=87.90  Aligned_cols=114  Identities=23%  Similarity=0.230  Sum_probs=71.4

Q ss_pred             CCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCCCC
Q 030931           47 QEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLK  125 (169)
Q Consensus        47 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~  125 (169)
                      .+.|..+...+.+.++++++|+|+.+..     ..|..++.+..  .+.|+++|+||+|+... ...+++.+.+. ...+
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~-~~~k  121 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMK-KRAK  121 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHH-HHHH
Confidence            4567888888889999999999997653     12222332211  26799999999998643 22223222110 0011


Q ss_pred             Ccee---EEEEeeeccCCCHHHHHHHHHHHHHhh--hccccccccccC
Q 030931          126 NRKW---HIQGTCALKGDGLYEGLDWLASTLKEM--RAAGYSSVGTSS  168 (169)
Q Consensus       126 ~~~~---~~~~~Sa~~~~gi~~~~~~l~~~~~~~--~~~~~~~~~~~s  168 (169)
                      ..++   .++++||++|.|++++++.+.+.....  ---+.+..|+||
T Consensus       122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKSt  169 (360)
T TIGR03597       122 ELGLKPVDIILVSAKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSS  169 (360)
T ss_pred             HcCCCcCcEEEecCCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHH
Confidence            1222   489999999999999999987653221  123455667666

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.01  E-value=1e-09  Score=78.52  Aligned_cols=151  Identities=17%  Similarity=0.159  Sum_probs=93.2

Q ss_pred             ccccCCCCCceeeeece---eeeeeeeeEEE-----EEEEECCEEEEEEEcCCCCC-------chhhHHhhccCCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKFY---LLFLLLVRFNV-----EKVQYKNVIFTVWDVGGQEK-------LRPLWRHYFNNTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~---~~~~~t~~~~~-----~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~~~ii~   66 (169)
                      |-++.|+|||||+|.+.   .....-++...     ....++...+.+||+||-+.       ++.....++...|.+++
T Consensus        44 i~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~  123 (296)
T COG3596          44 LMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLW  123 (296)
T ss_pred             EecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEE
Confidence            34699999999999863   22222223211     12334668899999999665       45556678889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----------C--HhHHHhhhCCCCC---CCceeEE
Q 030931           67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----------T--PMEVCEGLGLFDL---KNRKWHI  131 (169)
Q Consensus        67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----------~--~~~~~~~~~~~~~---~~~~~~~  131 (169)
                      +.|..|+.-=-+ ..++.++....  -+.|++++.|.+|...+.          +  .++..+.. .+..   -..--++
T Consensus       124 l~~~~draL~~d-~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k-~~~~~~~~q~V~pV  199 (296)
T COG3596         124 LIKADDRALGTD-EDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEK-AEALGRLFQEVKPV  199 (296)
T ss_pred             eccCCCccccCC-HHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHH-HHHHHHHHhhcCCe
Confidence            999977531101 12334443322  358999999999975331          1  01111000 0000   0111257


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          132 QGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       132 ~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      +..|+..++|++++...++..+...
T Consensus       200 ~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         200 VAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             EEeccccCccHHHHHHHHHHhCccc
Confidence            8888999999999999999887754

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.00  E-value=1.5e-09  Score=80.44  Aligned_cols=107  Identities=16%  Similarity=0.071  Sum_probs=65.7

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHH
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEV  115 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~  115 (169)
                      ++.+.|.||+|...   ........+|.++++.+..   +-+++......+      .++|.++++||+|+.........
T Consensus       126 g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~---~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~  193 (300)
T TIGR00750       126 GYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPG---TGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTIA  193 (300)
T ss_pred             CCCEEEEeCCCCch---hhhHHHHhhceEEEEecCC---ccHHHHHHHHHH------hhhccEEEEEcccccchhHHHHH
Confidence            67889999998531   2223566788888885443   223333333333      25678999999998754322111


Q ss_pred             Hhhh--CCCCC-C---CceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931          116 CEGL--GLFDL-K---NRKWHIQGTCALKGDGLYEGLDWLASTLK  154 (169)
Q Consensus       116 ~~~~--~~~~~-~---~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  154 (169)
                      ...+  ..... .   ....+++++||+++.|++++++++.+...
T Consensus       194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            1111  00000 1   11235899999999999999999998644

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PTZ00416 elongation factor 2; Provisional

Probab=99.00  E-value=7.6e-10  Score=91.98  Aligned_cols=67  Identities=18%  Similarity=0.242  Sum_probs=52.4

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      ++.+.+.||||+..|.......++.+|++|+|+|+.+.-.... ...+..+.+    .++|+++++||+|+.
T Consensus        91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----cCCCEEEEEEChhhh
Confidence            6789999999999998888888999999999999976433222 233334322    358999999999986

>PRK00098 GTPase RsgA; Reviewed

Probab=98.98  E-value=3.4e-10  Score=83.77  Aligned_cols=102  Identities=22%  Similarity=0.163  Sum_probs=65.4

Q ss_pred             hccCCCEEEEEEECCChhhHHH-HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEee
Q 030931           57 YFNNTDGLIYVVDSLDRERIGK-AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTC  135 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  135 (169)
                      ..+++|++++|+|+.++..... +..|+..+..    .++|+++|+||+|+.+.  .........  .....+++++++|
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~--~~~~~~~~~--~~~~~g~~v~~vS  148 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDD--LEEARELLA--LYRAIGYDVLELS  148 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCC--HHHHHHHHH--HHHHCCCeEEEEe
Confidence            3589999999999987755443 4566655422    47899999999999532  121111111  0122346799999


Q ss_pred             eccCCCHHHHHHHHHHHHHhhhccccccccccC
Q 030931          136 ALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSS  168 (169)
Q Consensus       136 a~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~s  168 (169)
                      |+++.|++++++.+...+.  -..+.++.|++|
T Consensus       149 A~~g~gi~~L~~~l~gk~~--~~~G~sgvGKSt  179 (298)
T PRK00098        149 AKEGEGLDELKPLLAGKVT--VLAGQSGVGKST  179 (298)
T ss_pred             CCCCccHHHHHhhccCceE--EEECCCCCCHHH
Confidence            9999999999988742211  122455566555

>cd01858 NGP_1 NGP-1

Probab=98.98  E-value=2.2e-09  Score=72.20  Aligned_cols=88  Identities=14%  Similarity=0.037  Sum_probs=57.1

Q ss_pred             hccCCCEEEEEEECCChhh--HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEe
Q 030931           57 YFNNTDGLIYVVDSLDRER--IGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGT  134 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (169)
                      .++.+|.+++|+|+.++..  ...+..++..    . ..+.|+++|+||+|+.+.....+....+.    +......+.+
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~----~-~~~~p~ilVlNKiDl~~~~~~~~~~~~~~----~~~~~~~~~i   75 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKK----E-KPHKHLIFVLNKCDLVPTWVTARWVKILS----KEYPTIAFHA   75 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHHHh----c-cCCCCEEEEEEchhcCCHHHHHHHHHHHh----cCCcEEEEEe
Confidence            4678999999999987532  2222323322    1 23589999999999954321222222222    1122336889


Q ss_pred             eeccCCCHHHHHHHHHHHH
Q 030931          135 CALKGDGLYEGLDWLASTL  153 (169)
Q Consensus       135 Sa~~~~gi~~~~~~l~~~~  153 (169)
                      ||+++.|++++++.+...+
T Consensus        76 Sa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          76 SINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             eccccccHHHHHHHHHHHH
Confidence            9999999999999997764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.96  E-value=3.1e-09  Score=82.32  Aligned_cols=149  Identities=10%  Similarity=0.137  Sum_probs=104.2

Q ss_pred             ccccCCCCCceeeeec-eeee----eeeee-EEEE-EEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh
Q 030931            2 LRVKQPYCTSCTLVKF-YLLF----LLLVR-FNVE-KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE   74 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-~~~~----~~t~~-~~~~-~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~   74 (169)
                      +.+..+||||+|++|| +..|    .|.-| +... .++...+-+.+.|.+|..     -..|..++|++||||.+.+.+
T Consensus        35 ivg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d~~  109 (749)
T KOG0705|consen   35 IVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVEDEQ  109 (749)
T ss_pred             eeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEEEEecccc
Confidence            3568899999999997 3333    33333 2222 245577888889988753     355778899999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           75 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP--MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      +|+.+..+...+........+|+++++++.-.....+.  .+.....  ...+...+.||++++.+|.++..+|..++..
T Consensus       110 s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~--l~~~~krcsy~et~atyGlnv~rvf~~~~~k  187 (749)
T KOG0705|consen  110 SFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQ--LSAQMKRCSYYETCATYGLNVERVFQEVAQK  187 (749)
T ss_pred             CHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHH--HHHhcCccceeecchhhhhhHHHHHHHHHHH
Confidence            99999888777765555568999999988755332211  1111111  1123445669999999999999999999987


Q ss_pred             HHhhh
Q 030931          153 LKEMR  157 (169)
Q Consensus       153 ~~~~~  157 (169)
                      +....
T Consensus       188 ~i~~~  192 (749)
T KOG0705|consen  188 IVQLR  192 (749)
T ss_pred             HHHHH
Confidence            76653

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.95  E-value=8.3e-09  Score=75.93  Aligned_cols=105  Identities=11%  Similarity=0.016  Sum_probs=62.4

Q ss_pred             CccccCCCCCceeeeeceeee------eeeee--EEEEEEEECCEEEEEEEcCCCCCchhhHH---hhc------cCCCE
Q 030931            1 MLRVKQPYCTSCTLVKFYLLF------LLLVR--FNVEKVQYKNVIFTVWDVGGQEKLRPLWR---HYF------NNTDG   63 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~------~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~~~---~~~------~~~~~   63 (169)
                      +|++++|+||||++|++....      .++.+  ........++.++.++||||.........   ..+      .+.|+
T Consensus        42 llvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~Dv  121 (313)
T TIGR00991        42 LVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDV  121 (313)
T ss_pred             EEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCE
Confidence            367899999999999863222      11111  12222345789999999999775432221   112      26899


Q ss_pred             EEEEEECCC--hhhH-HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           64 LIYVVDSLD--RERI-GKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        64 ii~v~d~~~--~~~~-~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      +++|..++.  .... ..+.+.+.+.....  --.+.+++.|+.|..
T Consensus       122 VLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~  166 (313)
T TIGR00991       122 LLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFS  166 (313)
T ss_pred             EEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccC
Confidence            999965532  2211 22333344443322  124799999999965

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.94  E-value=5e-09  Score=75.52  Aligned_cols=106  Identities=10%  Similarity=0.002  Sum_probs=64.7

Q ss_pred             CccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCchh---h-------HHhhcc--C
Q 030931            1 MLRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP---L-------WRHYFN--N   60 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~-------~~~~~~--~   60 (169)
                      +|+++.|+|||||+|.+....        ..|..........++.++.+|||||-.....   .       ...++.  .
T Consensus        35 llvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~  114 (249)
T cd01853          35 LVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKT  114 (249)
T ss_pred             EEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccC
Confidence            367899999999999763322        2333444444556788999999999765421   1       112332  5


Q ss_pred             CCEEEEEEECCCh-hhHH--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           61 TDGLIYVVDSLDR-ERIG--KAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        61 ~~~ii~v~d~~~~-~~~~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      .+++++|..++.. .+..  .+.+.+.+.+....  -.++++|.||+|...
T Consensus       115 idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~  163 (249)
T cd01853         115 PDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI--WRNAIVVLTHAASSP  163 (249)
T ss_pred             CCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh--HhCEEEEEeCCccCC
Confidence            7888888766432 2222  23334444333111  246999999999754

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=4.9e-09  Score=84.90  Aligned_cols=97  Identities=16%  Similarity=0.096  Sum_probs=72.7

Q ss_pred             CCCCceeeeec-------------------------eeeeeeeeeEEEEEEEECC-EEEEEEEcCCCCCchhhHHhhccC
Q 030931            7 PYCTSCTLVKF-------------------------YLLFLLLVRFNVEKVQYKN-VIFTVWDVGGQEKLRPLWRHYFNN   60 (169)
Q Consensus         7 ~~~Ktsll~~f-------------------------~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~   60 (169)
                      .+|||||..++                         ..+..-|+.....++.+.+ +.+++.|||||-.|.......++-
T Consensus        20 daGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrv   99 (697)
T COG0480          20 DAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRV   99 (697)
T ss_pred             CCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHh
Confidence            68999999864                         1122334444556677775 999999999999999999999999


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           61 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        61 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      +|+++.|+|+...-....-..|.+.. +    .++|.+++.||+|...
T Consensus       100 lDgavvVvdaveGV~~QTEtv~rqa~-~----~~vp~i~fiNKmDR~~  142 (697)
T COG0480         100 LDGAVVVVDAVEGVEPQTETVWRQAD-K----YGVPRILFVNKMDRLG  142 (697)
T ss_pred             hcceEEEEECCCCeeecHHHHHHHHh-h----cCCCeEEEEECccccc
Confidence            99999999997654333333344333 2    3789999999999764

>cd01882 BMS1 Bms1

Probab=98.88  E-value=7.1e-09  Score=73.83  Aligned_cols=132  Identities=5%  Similarity=-0.118  Sum_probs=73.4

Q ss_pred             ccccCCCCCceeeeeceeee-eeeeeEE---EEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFYLLF-LLLVRFN---VEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~-~~t~~~~---~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +.+.+|+|||||++.+.... ..+....   +......+..+.++||||..  ..+ ....+.+|++++|+|.+......
T Consensus        44 ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~~~~  120 (225)
T cd01882          44 VVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGFEME  120 (225)
T ss_pred             EECCCCCCHHHHHHHHHhhcccCccccccccEEEEecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCCCHH
Confidence            45678999999998663221 1111110   11123367889999999864  322 33468899999999997543322


Q ss_pred             HHHHHHHHHhcCCCCCCCeE-EEEEeCCCCCCCCC-HhHHHhhhCCCCC--CCceeEEEEeeeccCCC
Q 030931           78 KAKQEFQAIIKDPFMLNSVI-LVFANKQDMKGAMT-PMEVCEGLGLFDL--KNRKWHIQGTCALKGDG  141 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~pi-ivv~nK~Dl~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~g  141 (169)
                      . ...+..+ ..   .+.|. ++|+||+|+.+... .+++...+.....  ...+.+++.+||++.-.
T Consensus       121 ~-~~i~~~l-~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         121 T-FEFLNIL-QV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             H-HHHHHHH-HH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            2 1222222 21   24664 55999999864321 1222222211000  11235799999998843

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.86  E-value=3e-08  Score=77.44  Aligned_cols=143  Identities=17%  Similarity=0.089  Sum_probs=96.0

Q ss_pred             ccccCCCCCceeeeecee-----eeeeeee----EEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKFYL-----LFLLLVR----FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-----~~~~t~~----~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +.+..++|||.+++.|-.     .+..+..    ++...+......+.+-|.+-. ....+...- ..||+++++||+++
T Consensus       430 V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~  507 (625)
T KOG1707|consen  430 VVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSN  507 (625)
T ss_pred             EEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCC
Confidence            457889999999998722     3333333    333334445556666676643 111111111 67999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-----MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                      +.+|......+......   ...|+++|+.|+|+.+.     ..+.+++..+++..       .+..|.++... .++|.
T Consensus       508 p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~-------P~~~S~~~~~s-~~lf~  576 (625)
T KOG1707|consen  508 PRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPP-------PIHISSKTLSS-NELFI  576 (625)
T ss_pred             chHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCC-------CeeeccCCCCC-chHHH
Confidence            99999887666555322   58999999999999653     24567777776552       46666664333 89999


Q ss_pred             HHHHHHHhhh
Q 030931          148 WLASTLKEMR  157 (169)
Q Consensus       148 ~l~~~~~~~~  157 (169)
                      .|+..+..++
T Consensus       577 kL~~~A~~Ph  586 (625)
T KOG1707|consen  577 KLATMAQYPH  586 (625)
T ss_pred             HHHHhhhCCC
Confidence            9998887776

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.83  E-value=7.8e-09  Score=75.81  Aligned_cols=100  Identities=19%  Similarity=0.116  Sum_probs=64.1

Q ss_pred             CCCCC-chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCC
Q 030931           45 GGQEK-LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD  123 (169)
Q Consensus        45 ~G~~~-~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~  123 (169)
                      |||.. ........++.+|.+++|+|+.++.+-..  .++.+.+     .+.|+++|.||+|+.+........+.+.   
T Consensus         5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~---   74 (276)
T TIGR03596         5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFE---   74 (276)
T ss_pred             hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHH---
Confidence            55532 22334567889999999999976543221  1223332     2579999999999853211122222221   


Q ss_pred             CCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          124 LKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       124 ~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                        ..+.+++.+||+++.|++++.+.+...+.+.
T Consensus        75 --~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        75 --EKGIKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             --HcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence              1224689999999999999999998877654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PTZ00258 GTP-binding protein; Provisional

Probab=98.83  E-value=1.7e-08  Score=76.80  Aligned_cols=70  Identities=16%  Similarity=0.131  Sum_probs=48.0

Q ss_pred             ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEEC-----------------CEEEEEEEcCCCCCc----hh-
Q 030931            2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYK-----------------NVIFTVWDVGGQEKL----RP-   52 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~----~~-   52 (169)
                      |++.+++|||||+|.+..       .++.|+..+...+...                 ...++++||||...-    .. 
T Consensus        26 IVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gL  105 (390)
T PTZ00258         26 IVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGL  105 (390)
T ss_pred             EECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHH
Confidence            567999999999998733       2444555555555443                 345899999995421    11 


Q ss_pred             --hHHhhccCCCEEEEEEECC
Q 030931           53 --LWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus        53 --~~~~~~~~~~~ii~v~d~~   71 (169)
                        .....++.+|++++|+|..
T Consensus       106 g~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        106 GNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             HHHHHHHHHHCCEEEEEEeCC
Confidence              2233567899999999984

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=1.4e-08  Score=79.16  Aligned_cols=118  Identities=19%  Similarity=0.202  Sum_probs=76.5

Q ss_pred             eeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh---hHH---HHHHHHHHHhcCCCCCCCeE
Q 030931           24 LVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RIG---KAKQEFQAIIKDPFMLNSVI   97 (169)
Q Consensus        24 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~pi   97 (169)
                      |..+....++.....+.+.|.|||..|-...-.-...||++++|+|++..+   .|+   +.+ ....+++..  .-..+
T Consensus       242 Tm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtr-Eha~llr~L--gi~ql  318 (603)
T KOG0458|consen  242 TMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTR-EHALLLRSL--GISQL  318 (603)
T ss_pred             eEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchH-HHHHHHHHc--CcceE
Confidence            334445556678899999999999999877777778899999999996421   121   111 122232322  35679


Q ss_pred             EEEEeCCCCCCCC--CHhHHHhhhC-----CCCCCCceeEEEEeeeccCCCHHH
Q 030931           98 LVFANKQDMKGAM--TPMEVCEGLG-----LFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        98 ivv~nK~Dl~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      ++++||+|+.+=.  ..+++...+.     ...+..-.+.|++||+..|+|+..
T Consensus       319 ivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  319 IVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             EEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence            9999999986521  1233333332     111233445799999999999654

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=98.80  E-value=8.8e-09  Score=73.79  Aligned_cols=118  Identities=16%  Similarity=0.149  Sum_probs=74.2

Q ss_pred             CEEEEEEEcCCCCCch------hhHHhhc--cCCCEEEEEEECC---ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030931           36 NVIFTVWDVGGQEKLR------PLWRHYF--NNTDGLIYVVDSL---DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ  104 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~------~~~~~~~--~~~~~ii~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~  104 (169)
                      .....+.|||||-..-      ...-..+  ....++++|+|..   ++.+|=+..-+...++-.   ...|.+++.||+
T Consensus       115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~  191 (366)
T KOG1532|consen  115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKT  191 (366)
T ss_pred             ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEecc
Confidence            4568899999975421      1111112  2457788888874   455676666666666543   378999999999


Q ss_pred             CCCCCCC-------HhHHHhhhCC---------------CC-CCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          105 DMKGAMT-------PMEVCEGLGL---------------FD-LKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       105 Dl~~~~~-------~~~~~~~~~~---------------~~-~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      |+.+..-       .+...+.+..               .. .-.++...+-+||.+|.|.+++|..+-..+.++
T Consensus       192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy  266 (366)
T KOG1532|consen  192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY  266 (366)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence            9976421       1111111110               00 012445689999999999999999988766654

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.79  E-value=5.3e-08  Score=69.44  Aligned_cols=134  Identities=22%  Similarity=0.352  Sum_probs=95.0

Q ss_pred             eeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHhcCCCCC
Q 030931           24 LVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDPFML   93 (169)
Q Consensus        24 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~   93 (169)
                      |.|+-...+..+.++|+++|++||..-+..|-.++.+..++|||...+.          .+++.+...+++.+-+...+.
T Consensus       189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~  268 (379)
T KOG0099|consen  189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR  268 (379)
T ss_pred             ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence            4456667788899999999999999989999999999999999998763          224445555666665566667


Q ss_pred             CCeEEEEEeCCCCCCC------------------------------CCHhHHHhhh-------CCCCC---CCceeEEEE
Q 030931           94 NSVILVFANKQDMKGA------------------------------MTPMEVCEGL-------GLFDL---KNRKWHIQG  133 (169)
Q Consensus        94 ~~piivv~nK~Dl~~~------------------------------~~~~~~~~~~-------~~~~~---~~~~~~~~~  133 (169)
                      .+.+|++.||.|+...                              .++.-+...+       ..+..   ....+.+.+
T Consensus       269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF  348 (379)
T KOG0099|consen  269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF  348 (379)
T ss_pred             hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence            8899999999997320                              0011111100       01111   234456788


Q ss_pred             eeeccCCCHHHHHHHHHHHHHhhh
Q 030931          134 TCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       134 ~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      +.|.+.++|..+|+..-+.+...+
T Consensus       349 TcAvDTenIrrVFnDcrdiIqr~h  372 (379)
T KOG0099|consen  349 TCAVDTENIRRVFNDCRDIIQRMH  372 (379)
T ss_pred             eEeechHHHHHHHHHHHHHHHHHH
Confidence            999999999999999888776654

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.79  E-value=2.7e-09  Score=75.34  Aligned_cols=155  Identities=10%  Similarity=-0.083  Sum_probs=84.4

Q ss_pred             CccccCCCCCceeeeece------ee---eeeeeeEEEEEEEECCEEEEEEEcCCCCCch----hh---H----HhhccC
Q 030931            1 MLRVKQPYCTSCTLVKFY------LL---FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLR----PL---W----RHYFNN   60 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~------~~---~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~---~----~~~~~~   60 (169)
                      +|+++.|+||||+.|.+-      ..   ...|...........+..+.++||||-..-.    ..   .    .....+
T Consensus         4 lllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g   83 (212)
T PF04548_consen    4 LLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPG   83 (212)
T ss_dssp             EEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-
T ss_pred             EEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCC
Confidence            478899999999999651      11   1224445555567799999999999943211    01   1    112347


Q ss_pred             CCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC----CCCCCCceeEEEEee
Q 030931           61 TDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG----LFDLKNRKWHIQGTC  135 (169)
Q Consensus        61 ~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~~~~S  135 (169)
                      .|++++|+...... .-....+++..++.....  .-++|+.+..|.......++......    ....+.++-.|+..+
T Consensus        84 ~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f~  161 (212)
T PF04548_consen   84 PHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW--KHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVFN  161 (212)
T ss_dssp             ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEECC
T ss_pred             CeEEEEEEecCcchHHHHHHHHHHHHHccHHHH--hHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEEe
Confidence            89999999987321 122333456665553222  35888888888655444322222000    001122333466655


Q ss_pred             ec------cCCCHHHHHHHHHHHHHhhh
Q 030931          136 AL------KGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       136 a~------~~~gi~~~~~~l~~~~~~~~  157 (169)
                      .+      ....+.++++.+-..+.+..
T Consensus       162 n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  162 NKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            55      33457777777776666654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.79  E-value=1e-08  Score=67.76  Aligned_cols=78  Identities=14%  Similarity=0.087  Sum_probs=49.6

Q ss_pred             HHhhccCCCEEEEEEECCChhhHH--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEE
Q 030931           54 WRHYFNNTDGLIYVVDSLDRERIG--KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHI  131 (169)
Q Consensus        54 ~~~~~~~~~~ii~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  131 (169)
                      ....++.+|++++|+|+.++.+..  .+..++...    . .+.|+++|+||+|+.+.....+....+     +..+.++
T Consensus         5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~-~~k~~iivlNK~DL~~~~~~~~~~~~~-----~~~~~~i   74 (141)
T cd01857           5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----D-PRKKNILLLNKADLLTEEQRKAWAEYF-----KKEGIVV   74 (141)
T ss_pred             HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----c-CCCcEEEEEechhcCCHHHHHHHHHHH-----HhcCCeE
Confidence            345678999999999998765433  333333322    1 468999999999985432111222222     2233568


Q ss_pred             EEeeeccCCC
Q 030931          132 QGTCALKGDG  141 (169)
Q Consensus       132 ~~~Sa~~~~g  141 (169)
                      +++||.++.+
T Consensus        75 i~iSa~~~~~   84 (141)
T cd01857          75 VFFSALKENA   84 (141)
T ss_pred             EEEEecCCCc
Confidence            9999998875

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=98.79  E-value=1e-07  Score=69.96  Aligned_cols=150  Identities=9%  Similarity=-0.011  Sum_probs=96.7

Q ss_pred             ccccCCCCCceeeeec--eeeeeeeeeEEEEEEEE------CCEEEEEEEcCCCCCchhhHHhhccCC----CEEEEEEE
Q 030931            2 LRVKQPYCTSCTLVKF--YLLFLLLVRFNVEKVQY------KNVIFTVWDVGGQEKLRPLWRHYFNNT----DGLIYVVD   69 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f--~~~~~~t~~~~~~~~~~------~~~~~~i~D~~G~~~~~~~~~~~~~~~----~~ii~v~d   69 (169)
                      +++..|+|||||+.++  .+.+.+-.|..+..+..      .-.++.+|=.-|.....++....+...    ..+|++.|
T Consensus        57 vlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltas  136 (473)
T KOG3905|consen   57 VLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTAS  136 (473)
T ss_pred             EEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEEEEEe
Confidence            5778999999999988  34555555555554444      357799998888877666666554432    46778889


Q ss_pred             CCCh-hhHHHHHHHHHHH----------------------------hc-----------C-------------------C
Q 030931           70 SLDR-ERIGKAKQEFQAI----------------------------IK-----------D-------------------P   90 (169)
Q Consensus        70 ~~~~-~~~~~~~~~~~~~----------------------------~~-----------~-------------------~   90 (169)
                      ++++ .-++++.+|..-+                            .+           +                   .
T Consensus       137 ms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dt  216 (473)
T KOG3905|consen  137 MSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDT  216 (473)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccccCCcc
Confidence            9887 3344444443211                            10           0                   0


Q ss_pred             --CCCCCeEEEEEeCCCCCC----CCC--H------hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931           91 --FMLNSVILVFANKQDMKG----AMT--P------MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE  155 (169)
Q Consensus        91 --~~~~~piivv~nK~Dl~~----~~~--~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  155 (169)
                        -.-++|++||++|||...    ..+  .      +.....++    -.++...+.+|++...|++-+.+.|++.+..
T Consensus       217 Lt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFC----Lr~GaaLiyTSvKE~KNidllyKYivhr~yG  291 (473)
T KOG3905|consen  217 LTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFC----LRYGAALIYTSVKETKNIDLLYKYIVHRSYG  291 (473)
T ss_pred             hhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHH----HHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence              001479999999999732    111  0      11111222    2345568999999999999999999987665

>cd01856 YlqF YlqF

Probab=98.78  E-value=7.4e-09  Score=70.67  Aligned_cols=91  Identities=15%  Similarity=0.026  Sum_probs=58.8

Q ss_pred             hhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEE
Q 030931           52 PLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHI  131 (169)
Q Consensus        52 ~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  131 (169)
                      ......+++||.+++|+|++++..-.. ..+....      .+.|+++|+||+|+.+.....+..+.+.     .....+
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~-----~~~~~v   78 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL------GNKPRIIVLNKADLADPKKTKKWLKYFE-----SKGEKV   78 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh------cCCCEEEEEehhhcCChHHHHHHHHHHH-----hcCCeE
Confidence            345567889999999999976543211 1112111      3579999999999853311111111111     112358


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHH
Q 030931          132 QGTCALKGDGLYEGLDWLASTLK  154 (169)
Q Consensus       132 ~~~Sa~~~~gi~~~~~~l~~~~~  154 (169)
                      +.+||+++.|++++.+.+...+.
T Consensus        79 i~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          79 LFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             EEEECCCcccHHHHHHHHHHHHH
Confidence            99999999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=2.7e-08  Score=79.65  Aligned_cols=111  Identities=25%  Similarity=0.249  Sum_probs=77.8

Q ss_pred             EEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-C----CC
Q 030931           39 FTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK-G----AM  110 (169)
Q Consensus        39 ~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-~----~~  110 (169)
                      +.++|||||+.|..++.....-||.+|+|+|+-+   +++.+++.     +|+.   ++.|+|+++||+|.. +    +.
T Consensus       542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~-----lLR~---rktpFivALNKiDRLYgwk~~p~  613 (1064)
T KOG1144|consen  542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN-----LLRM---RKTPFIVALNKIDRLYGWKSCPN  613 (1064)
T ss_pred             eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHH-----HHHh---cCCCeEEeehhhhhhcccccCCC
Confidence            7899999999999999999999999999999963   55565543     3332   478999999999952 1    00


Q ss_pred             -C------------HhHHHh-------hh---CCCCC---C----CceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          111 -T------------PMEVCE-------GL---GLFDL---K----NRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       111 -~------------~~~~~~-------~~---~~~~~---~----~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                       +            ..++..       .+   +++..   +    ...+.++++||..|+||.+++.+|+.......
T Consensus       614 ~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m  690 (1064)
T KOG1144|consen  614 APIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM  690 (1064)
T ss_pred             chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence             0            011111       11   11100   1    12356899999999999999999998666543

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=5.5e-08  Score=76.34  Aligned_cols=73  Identities=16%  Similarity=0.163  Sum_probs=55.8

Q ss_pred             EEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           30 EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        30 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      ..+.+..++++++|||||-.|.-.....++-.|++|+|+|....-.-.....|.+.- +    -++|.+.+.||+|..
T Consensus        97 t~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~-r----y~vP~i~FiNKmDRm  169 (721)
T KOG0465|consen   97 TYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMK-R----YNVPRICFINKMDRM  169 (721)
T ss_pred             eeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHH-h----cCCCeEEEEehhhhc
Confidence            346668999999999999999999999999999999999986543222333333222 1    278999999999954

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.74  E-value=1.8e-08  Score=74.43  Aligned_cols=151  Identities=16%  Similarity=0.105  Sum_probs=88.0

Q ss_pred             ccccCCCCCceeeeec---------ee-----eeeeeeeEEEEEEEE---------CCEEEEEEEcCCCCCchhhHHhhc
Q 030931            2 LRVKQPYCTSCTLVKF---------YL-----LFLLLVRFNVEKVQY---------KNVIFTVWDVGGQEKLRPLWRHYF   58 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f---------~~-----~~~~t~~~~~~~~~~---------~~~~~~i~D~~G~~~~~~~~~~~~   58 (169)
                      +++--.||||+|..++         +.     ...-|...-+.++..         +...+.+.|+|||.   ++.+..+
T Consensus        12 iLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa---sLIRtii   88 (522)
T KOG0461|consen   12 ILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA---SLIRTII   88 (522)
T ss_pred             eEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH---HHHHHHH
Confidence            3456689999999864         22     222333333333322         45678999999994   4555555


Q ss_pred             cCC---CEEEEEEECCChhhHHHHHHH-HHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhC--CCCCC-Cc
Q 030931           59 NNT---DGLIYVVDSLDRERIGKAKQE-FQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLG--LFDLK-NR  127 (169)
Q Consensus        59 ~~~---~~ii~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~--~~~~~-~~  127 (169)
                      .+|   |..++|+|+...-.-....-+ +-++      -....++|+||+|...+..    .++....+.  +..-. ..
T Consensus        89 ggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g  162 (522)
T KOG0461|consen   89 GGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDG  162 (522)
T ss_pred             hhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCC
Confidence            544   778899998643211111111 1111      2345788888888754321    122222111  11111 23


Q ss_pred             eeEEEEeeeccC----CCHHHHHHHHHHHHHhhhcccc
Q 030931          128 KWHIQGTCALKG----DGLYEGLDWLASTLKEMRAAGY  161 (169)
Q Consensus       128 ~~~~~~~Sa~~~----~gi~~~~~~l~~~~~~~~~~~~  161 (169)
                      +.|++++||+.|    ++|.++.+.+.+++.++++...
T Consensus       163 ~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~  200 (522)
T KOG0461|consen  163 NSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEE  200 (522)
T ss_pred             CCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCC
Confidence            478999999999    8888888888888887765543

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.72  E-value=5.6e-08  Score=75.73  Aligned_cols=156  Identities=10%  Similarity=0.025  Sum_probs=98.5

Q ss_pred             ccccCCCCCceeeeec--eeeeeeeeeEEEEEEEE------CCEEEEEEEcCCCCCchhhHHhhccC----CCEEEEEEE
Q 030931            2 LRVKQPYCTSCTLVKF--YLLFLLLVRFNVEKVQY------KNVIFTVWDVGGQEKLRPLWRHYFNN----TDGLIYVVD   69 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f--~~~~~~t~~~~~~~~~~------~~~~~~i~D~~G~~~~~~~~~~~~~~----~~~ii~v~d   69 (169)
                      +++..++|||||+.+|  .+.+.++.+..|..++.      ...++.+|...|...+..+....+..    --.+|+|.|
T Consensus        30 vlG~~~~GKttli~~L~~~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlD  109 (472)
T PF05783_consen   30 VLGDKGSGKTTLIARLQGIEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLD  109 (472)
T ss_pred             EEeCCCCchHHHHHHhhccCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEEec
Confidence            5678999999999998  35566777766555544      23579999998877777776655542    367889999


Q ss_pred             CCChhhH-HHHHHHHHHH----------------------------hc---CC-----------------C---------
Q 030931           70 SLDRERI-GKAKQEFQAI----------------------------IK---DP-----------------F---------   91 (169)
Q Consensus        70 ~~~~~~~-~~~~~~~~~~----------------------------~~---~~-----------------~---------   91 (169)
                      .+.+..+ +.+..|+.-+                            .+   ..                 .         
T Consensus       110 lS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g  189 (472)
T PF05783_consen  110 LSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEG  189 (472)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccCCCCCc
Confidence            9976542 2222222111                            00   00                 0         


Q ss_pred             ----CCCCeEEEEEeCCCCCCCC----CH-hH---HHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931           92 ----MLNSVILVFANKQDMKGAM----TP-ME---VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus        92 ----~~~~piivv~nK~Dl~~~~----~~-~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                          .-++|++||++|+|.....    .. ++   +....-...+-+++...+.||++...+++-+++.|.+.+....
T Consensus       190 ~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~~  267 (472)
T PF05783_consen  190 VLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGFP  267 (472)
T ss_pred             ccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccCC
Confidence                0037999999999964311    10 11   1111101111245667899999999999999999888877643

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=2.7e-08  Score=72.79  Aligned_cols=119  Identities=13%  Similarity=0.035  Sum_probs=79.5

Q ss_pred             EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----
Q 030931           37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----  112 (169)
Q Consensus        37 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~----  112 (169)
                      .++.|.|.|||+-.-...-.-..-.|++++|++.+.+..-.+.++.+..+ +.  ..-..++++-||+|+......    
T Consensus        86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eI--igik~iiIvQNKIDlV~~E~AlE~y  162 (415)
T COG5257          86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EI--IGIKNIIIVQNKIDLVSRERALENY  162 (415)
T ss_pred             EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hh--hccceEEEEecccceecHHHHHHHH
Confidence            56889999999754433333333459999999998765555555444333 21  124579999999999653221    


Q ss_pred             hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhhccc
Q 030931          113 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAG  160 (169)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~  160 (169)
                      +++.+-..-.  -..+.+++++||..+.||+-+++.+.+.+..+....
T Consensus       163 ~qIk~FvkGt--~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~  208 (415)
T COG5257         163 EQIKEFVKGT--VAENAPIIPISAQHKANIDALIEAIEKYIPTPERDL  208 (415)
T ss_pred             HHHHHHhccc--ccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCC
Confidence            2222222211  134568999999999999999999999988775443

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.66  E-value=1.2e-07  Score=63.59  Aligned_cols=83  Identities=16%  Similarity=0.129  Sum_probs=53.1

Q ss_pred             CEEEEEEECCChhhHHHHHHHHH-HHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCC
Q 030931           62 DGLIYVVDSLDRERIGKAKQEFQ-AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGD  140 (169)
Q Consensus        62 ~~ii~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  140 (169)
                      |.+++|+|+.++.+...  .++. ..+..   .+.|+++|+||+|+.+.....+....+.    ......++.+||+++.
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~---~~~p~IiVlNK~Dl~~~~~~~~~~~~~~----~~~~~~ii~vSa~~~~   71 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERVLIKE---KGKKLILVLNKADLVPKEVLRKWLAYLR----HSYPTIPFKISATNGQ   71 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHHHHhc---CCCCEEEEEechhcCCHHHHHHHHHHHH----hhCCceEEEEeccCCc
Confidence            68999999987654432  2232 22222   3689999999999853211111111121    1123458999999999


Q ss_pred             CHHHHHHHHHHHH
Q 030931          141 GLYEGLDWLASTL  153 (169)
Q Consensus       141 gi~~~~~~l~~~~  153 (169)
                      |++++++.+....
T Consensus        72 gi~~L~~~i~~~~   84 (155)
T cd01849          72 GIEKKESAFTKQT   84 (155)
T ss_pred             ChhhHHHHHHHHh
Confidence            9999999987654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK13796 GTPase YqeH; Provisional

Probab=98.62  E-value=4.4e-08  Score=74.54  Aligned_cols=102  Identities=24%  Similarity=0.262  Sum_probs=59.8

Q ss_pred             cCCC-EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCcee---EEEE
Q 030931           59 NNTD-GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKW---HIQG  133 (169)
Q Consensus        59 ~~~~-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~---~~~~  133 (169)
                      ..++ .+++|+|+.+..  ......+..+.     .+.|+++|+||+|+.... ..+++.+.+. ...+..++   .++.
T Consensus        67 ~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~-~~~k~~g~~~~~v~~  138 (365)
T PRK13796         67 GDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLR-QEAKELGLRPVDVVL  138 (365)
T ss_pred             cccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHH-HHHHhcCCCcCcEEE
Confidence            4444 899999997743  11122233322     267999999999996422 2222222111 00111122   4899


Q ss_pred             eeeccCCCHHHHHHHHHHHHHhhh--ccccccccccC
Q 030931          134 TCALKGDGLYEGLDWLASTLKEMR--AAGYSSVGTSS  168 (169)
Q Consensus       134 ~Sa~~~~gi~~~~~~l~~~~~~~~--~~~~~~~~~~s  168 (169)
                      +||+++.|++++++.+.+......  .-+.+..|+||
T Consensus       139 vSAk~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKST  175 (365)
T PRK13796        139 ISAQKGHGIDELLEAIEKYREGRDVYVVGVTNVGKST  175 (365)
T ss_pred             EECCCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHH
Confidence            999999999999999977543221  23455666665

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.60  E-value=1.5e-07  Score=69.47  Aligned_cols=101  Identities=22%  Similarity=0.153  Sum_probs=64.5

Q ss_pred             cCCCCC-chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC
Q 030931           44 VGGQEK-LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF  122 (169)
Q Consensus        44 ~~G~~~-~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~  122 (169)
                      .|||.. -.......++.+|++++|+|+.++.+-..  .++.+.+.     +.|+++|.||+|+.+........+.+.  
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~--   77 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFE--   77 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHH--
Confidence            356532 12334557889999999999976543221  22333322     579999999999853211112222121  


Q ss_pred             CCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          123 DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       123 ~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                         ..+.+++.+||+++.|+.++.+.+...+.+.
T Consensus        78 ---~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         78 ---EQGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             ---HcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence               1134689999999999999999988877654

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.57  E-value=1.1e-07  Score=75.43  Aligned_cols=67  Identities=19%  Similarity=0.255  Sum_probs=53.7

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM  106 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  106 (169)
                      +.+-+++.|||||-.|....-..++.+|++++|+|+.+.-.++.-+ .++..    ...+.|+++|+||+|.
T Consensus       195 KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-~ikha----iq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  195 KSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-IIKHA----IQNRLPIVVVINKVDR  261 (971)
T ss_pred             ceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-HHHHH----HhccCcEEEEEehhHH
Confidence            5788999999999999998888999999999999997765554322 23232    2247899999999995

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.51  E-value=1.8e-07  Score=67.87  Aligned_cols=130  Identities=22%  Similarity=0.165  Sum_probs=75.3

Q ss_pred             eeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030931           24 LVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK  103 (169)
Q Consensus        24 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK  103 (169)
                      |+......++.+...+-..|+|||..|-...-.-..++|+.|+|+.+++-.- .+.++.+   |-.....-.-++++.||
T Consensus        62 TIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpm-PqTrEHi---LlarqvGvp~ivvflnK  137 (394)
T COG0050          62 TINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHI---LLARQVGVPYIVVFLNK  137 (394)
T ss_pred             eeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCC-Ccchhhh---hhhhhcCCcEEEEEEec
Confidence            3333334455588999999999998876655555678899999999977432 2222111   11111123468888999


Q ss_pred             CCCCCCCCH-----hHHHhhhCCCCCCCceeEEEEeeeccC-C-------CHHHHHHHHHHHHHhhh
Q 030931          104 QDMKGAMTP-----MEVCEGLGLFDLKNRKWHIQGTCALKG-D-------GLYEGLDWLASTLKEMR  157 (169)
Q Consensus       104 ~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~-------gi~~~~~~l~~~~~~~~  157 (169)
                      +|+.+....     .|+.+.+......--..|++.-||..- +       .|.++++.+-..+..+.
T Consensus       138 ~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe  204 (394)
T COG0050         138 VDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE  204 (394)
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCC
Confidence            999763221     223333322222233456777777632 2       24566666665555543

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.50  E-value=1.1e-07  Score=66.80  Aligned_cols=138  Identities=22%  Similarity=0.349  Sum_probs=102.7

Q ss_pred             eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC----------ChhhHHHHHHHHHHHhcC
Q 030931           20 LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL----------DRERIGKAKQEFQAIIKD   89 (169)
Q Consensus        20 ~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~~~~~~~~~~~~~~~~   89 (169)
                      ...||.|+...+++...+.+.+.|++|+..-+..|-+++.+...++|.+.++          +.++++....++..++..
T Consensus       182 vRvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~y  261 (359)
T KOG0085|consen  182 VRVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITY  261 (359)
T ss_pred             eecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcc
Confidence            3467778888888889999999999999988888999999988888877654          456788888889999888


Q ss_pred             CCCCCCeEEEEEeCCCCCCCC-----------------CHhHHHhhhC------CCCCCCceeEEEEeeeccCCCHHHHH
Q 030931           90 PFMLNSVILVFANKQDMKGAM-----------------TPMEVCEGLG------LFDLKNRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus        90 ~~~~~~piivv~nK~Dl~~~~-----------------~~~~~~~~~~------~~~~~~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      +...+.++|++.||.|+.+..                 ...+....+-      ...-..+-+.-.+++|.+.+||--+|
T Consensus       262 PWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVF  341 (359)
T KOG0085|consen  262 PWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVF  341 (359)
T ss_pred             ccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHH
Confidence            888999999999999985421                 0011111110      11112223334678999999999999


Q ss_pred             HHHHHHHHhhh
Q 030931          147 DWLASTLKEMR  157 (169)
Q Consensus       147 ~~l~~~~~~~~  157 (169)
                      ..+-+.+.+..
T Consensus       342 aaVkDtiLq~~  352 (359)
T KOG0085|consen  342 AAVKDTILQLN  352 (359)
T ss_pred             HHHHHHHHHhh
Confidence            99888777654

>TIGR00101 ureG urease accessory protein UreG

Probab=98.49  E-value=1.1e-06  Score=61.54  Aligned_cols=100  Identities=16%  Similarity=0.143  Sum_probs=60.5

Q ss_pred             EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeE--EEEEeCCCCCCCC--CH
Q 030931           37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI--LVFANKQDMKGAM--TP  112 (169)
Q Consensus        37 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi--ivv~nK~Dl~~~~--~~  112 (169)
                      ....+.++.|..-.....+.   -++.+|.|+|+.+.++...  .+.         ..+..  ++++||+|+.+..  ..
T Consensus        92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~---------~qi~~ad~~~~~k~d~~~~~~~~~  157 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGG---------PGITRSDLLVINKIDLAPMVGADL  157 (199)
T ss_pred             CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhH---------hHhhhccEEEEEhhhccccccccH
Confidence            44556777773211112211   2688999999976544221  111         12333  8999999997532  23


Q ss_pred             hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931          113 MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                      +.+.+.....   ..+.+++++||++|+|++++|+++.+.+
T Consensus       158 ~~~~~~~~~~---~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       158 GVMERDAKKM---RGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHHHHh---CCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3333322211   2245699999999999999999998754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.48  E-value=2.7e-07  Score=67.54  Aligned_cols=56  Identities=21%  Similarity=0.261  Sum_probs=39.1

Q ss_pred             CCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           94 NSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        94 ~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      ..+-++++||+|+.+..  +.+.+...+..   .....+++++||++|+|++++.+|+...
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~---lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACARE---VNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHh---hCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            46789999999996532  23333333221   1223569999999999999999999764

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.45  E-value=4.1e-07  Score=61.64  Aligned_cols=65  Identities=20%  Similarity=0.166  Sum_probs=44.0

Q ss_pred             CEEEEEEEcCCCCC----chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030931           36 NVIFTVWDVGGQEK----LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ  104 (169)
Q Consensus        36 ~~~~~i~D~~G~~~----~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~  104 (169)
                      ...+.++||||-..    ...++..+++.+|++|+|.+.+...+-.....+.+.. +.   ....+++|.||.
T Consensus       100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~-~~---~~~~~i~V~nk~  168 (168)
T PF00350_consen  100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML-DP---DKSRTIFVLNKA  168 (168)
T ss_dssp             SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH-TT---TCSSEEEEEE-G
T ss_pred             ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh-cC---CCCeEEEEEcCC
Confidence            34589999999532    3356788889999999999998755444444444444 22   234499999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=98.44  E-value=2.2e-07  Score=63.60  Aligned_cols=79  Identities=23%  Similarity=0.188  Sum_probs=49.0

Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhc-CCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCCCCCceeEEEEeeecc
Q 030931           62 DGLIYVVDSLDRERIGKAKQEFQAIIK-DPFMLNSVILVFANKQDMKGAMTP--MEVCEGLGLFDLKNRKWHIQGTCALK  138 (169)
Q Consensus        62 ~~ii~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~  138 (169)
                      +.-|+|+|.+.-+...         ++ .+.+. .-=++|+||.|+......  +.+......   -+-..+++++|+++
T Consensus       119 ~~~v~VidvteGe~~P---------~K~gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~---~np~~~ii~~n~kt  185 (202)
T COG0378         119 HLRVVVIDVTEGEDIP---------RKGGPGIF-KADLLVINKTDLAPYVGADLEVMARDAKE---VNPEAPIIFTNLKT  185 (202)
T ss_pred             ceEEEEEECCCCCCCc---------ccCCCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHH---hCCCCCEEEEeCCC
Confidence            4778888886543111         11 11111 256789999999765432  333222211   12235699999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 030931          139 GDGLYEGLDWLASTL  153 (169)
Q Consensus       139 ~~gi~~~~~~l~~~~  153 (169)
                      |+|++++++|+....
T Consensus       186 g~G~~~~~~~i~~~~  200 (202)
T COG0378         186 GEGLDEWLRFIEPQA  200 (202)
T ss_pred             CcCHHHHHHHHHhhc
Confidence            999999999987653

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.43  E-value=1.3e-06  Score=63.60  Aligned_cols=113  Identities=19%  Similarity=0.192  Sum_probs=73.0

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHh
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPM  113 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~  113 (169)
                      .++.+.|.+|.|.....   -.....+|.+++|.-..--+..+.++.=+-+         +-=++|+||.|..++. ...
T Consensus       142 aG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE---------iaDi~vINKaD~~~A~~a~r  209 (323)
T COG1703         142 AGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIME---------IADIIVINKADRKGAEKAAR  209 (323)
T ss_pred             cCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhh---------hhheeeEeccChhhHHHHHH
Confidence            46778899998753211   2244668999988866544444444433323         3457899999976542 234


Q ss_pred             HHHhhhCCCC--CCC--ceeEEEEeeeccCCCHHHHHHHHHHHHHhhhcc
Q 030931          114 EVCEGLGLFD--LKN--RKWHIQGTCALKGDGLYEGLDWLASTLKEMRAA  159 (169)
Q Consensus       114 ~~~~~~~~~~--~~~--~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~  159 (169)
                      ++...+....  ...  ...+.+.|||.+|+|++++++.+.++.......
T Consensus       210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~s  259 (323)
T COG1703         210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTES  259 (323)
T ss_pred             HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhc
Confidence            4444444332  222  234699999999999999999999877766544

>cd01900 YchF YchF subfamily

Probab=98.39  E-value=6.1e-07  Score=65.53  Aligned_cols=70  Identities=16%  Similarity=0.087  Sum_probs=47.7

Q ss_pred             ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEECC-----------------EEEEEEEcCCCCCc----hhh
Q 030931            2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYKN-----------------VIFTVWDVGGQEKL----RPL   53 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~----~~~   53 (169)
                      |.+.+.+|||||+|+++.       .+++|+..+...+.+.+                 ..++++|+||...-    ..+
T Consensus         3 ivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~gl   82 (274)
T cd01900           3 IVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGL   82 (274)
T ss_pred             EeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHH
Confidence            578999999999997632       34556565555554433                 25999999995431    122


Q ss_pred             ---HHhhccCCCEEEEEEECC
Q 030931           54 ---WRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus        54 ---~~~~~~~~~~ii~v~d~~   71 (169)
                         .-..++.+|++++|+|..
T Consensus        83 g~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          83 GNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHhCCEEEEEEeCc
Confidence               223467899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.33  E-value=1.4e-07  Score=71.35  Aligned_cols=147  Identities=12%  Similarity=0.032  Sum_probs=71.5

Q ss_pred             ccccCCCCCceeeeece-----eeeeeeeeE-----EEEEEEECC-EEEEEEEcCCCCCchhhHHh-----hccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFY-----LLFLLLVRF-----NVEKVQYKN-VIFTVWDVGGQEKLRPLWRH-----YFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-----~~~~~t~~~-----~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~-----~~~~~~~ii   65 (169)
                      +.+..|+|||||+|.+.     +......|+     ....+.... -++.+||.||...-.-....     -+...|.+|
T Consensus        40 V~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fi  119 (376)
T PF05049_consen   40 VTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFI  119 (376)
T ss_dssp             EEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEE
Confidence            45789999999999771     111122221     112222222 24899999996432222222     355789888


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-------C--CCCHh----HH----HhhhCCCCCCCce
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK-------G--AMTPM----EV----CEGLGLFDLKNRK  128 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-------~--~~~~~----~~----~~~~~~~~~~~~~  128 (169)
                      ++.+    ++|.....++..-++.   .++|+.+|-+|+|..       .  ..+.+    ++    .+.+..  ..-..
T Consensus       120 ii~s----~rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k--~gv~~  190 (376)
T PF05049_consen  120 IISS----ERFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK--AGVSE  190 (376)
T ss_dssp             EEES----SS--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC--TT-SS
T ss_pred             EEeC----CCCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH--cCCCc
Confidence            8764    3455544443333332   378999999999951       1  11111    11    112211  12233


Q ss_pred             eEEEEeeeccCC--CHHHHHHHHHHHHHhhh
Q 030931          129 WHIQGTCALKGD--GLYEGLDWLASTLKEMR  157 (169)
Q Consensus       129 ~~~~~~Sa~~~~--gi~~~~~~l~~~~~~~~  157 (169)
                      .++|-+|+.+-.  .+..+.+.+.+.+...+
T Consensus       191 P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  191 PQVFLVSSFDLSKYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             --EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred             CceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence            468999988654  47778888887777654

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.32  E-value=4.5e-06  Score=63.44  Aligned_cols=84  Identities=17%  Similarity=0.179  Sum_probs=56.2

Q ss_pred             ccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeec
Q 030931           58 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL  137 (169)
Q Consensus        58 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  137 (169)
                      ..++|.+++|+++...-....+..++..+-.    .++|.++|+||+|+.+.  .++....+..  . ..+++++.+|++
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~--~-~~g~~Vi~vSa~  180 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEA--L-APGVPVLAVSAL  180 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHH--h-CCCCcEEEEECC
Confidence            5789999999999644444445555544422    36788999999999643  2222222211  1 235678999999


Q ss_pred             cCCCHHHHHHHHH
Q 030931          138 KGDGLYEGLDWLA  150 (169)
Q Consensus       138 ~~~gi~~~~~~l~  150 (169)
                      ++.|++++..++.
T Consensus       181 ~g~gl~~L~~~L~  193 (356)
T PRK01889        181 DGEGLDVLAAWLS  193 (356)
T ss_pred             CCccHHHHHHHhh
Confidence            9999999888874

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.31  E-value=4.4e-07  Score=66.66  Aligned_cols=138  Identities=16%  Similarity=0.081  Sum_probs=84.6

Q ss_pred             ccCCCCCceeeeec-------eeeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCC---------chhhHHhhccCCCEEEE
Q 030931            4 VKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEK---------LRPLWRHYFNNTDGLIY   66 (169)
Q Consensus         4 ~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~---------~~~~~~~~~~~~~~ii~   66 (169)
                      +=..+|||||++++       .+.-+.|...+...... .+..+.+.||.|--.         |+.... ....+|.++.
T Consensus       185 GYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLe-eVaeadlllH  263 (410)
T KOG0410|consen  185 GYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLE-EVAEADLLLH  263 (410)
T ss_pred             eecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHH-HHhhcceEEE
Confidence            34689999999976       34556666655554444 356688899998321         222222 3467999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcCCCCCCCeEE----EEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931           67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL----VFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  142 (169)
Q Consensus        67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii----vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  142 (169)
                      |.|+++++.-.....-+. .++.-..++.|.+    =|-||+|......    ..       ++.  .-+.+||++|.|.
T Consensus       264 vvDiShP~ae~q~e~Vl~-vL~~igv~~~pkl~~mieVdnkiD~e~~~~----e~-------E~n--~~v~isaltgdgl  329 (410)
T KOG0410|consen  264 VVDISHPNAEEQRETVLH-VLNQIGVPSEPKLQNMIEVDNKIDYEEDEV----EE-------EKN--LDVGISALTGDGL  329 (410)
T ss_pred             EeecCCccHHHHHHHHHH-HHHhcCCCcHHHHhHHHhhccccccccccC----cc-------ccC--CccccccccCccH
Confidence            999998865443332222 2222233334444    4556666532211    11       111  1588999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 030931          143 YEGLDWLASTLKEM  156 (169)
Q Consensus       143 ~~~~~~l~~~~~~~  156 (169)
                      +++.+.+-..+...
T Consensus       330 ~el~~a~~~kv~~~  343 (410)
T KOG0410|consen  330 EELLKAEETKVASE  343 (410)
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999887766553

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.26  E-value=5.7e-07  Score=64.40  Aligned_cols=110  Identities=16%  Similarity=0.126  Sum_probs=65.3

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-Hh
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PM  113 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~  113 (169)
                      .++.+.|.+|.|.-.  +.. ....-+|.+++|.-..--+..+.++.=+-+         +.=++|.||.|.+.+.. ..
T Consensus       120 aG~D~IiiETVGvGQ--sE~-~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE---------iaDi~vVNKaD~~gA~~~~~  187 (266)
T PF03308_consen  120 AGFDVIIIETVGVGQ--SEV-DIADMADTVVLVLVPGLGDEIQAIKAGIME---------IADIFVVNKADRPGADRTVR  187 (266)
T ss_dssp             TT-SEEEEEEESSST--HHH-HHHTTSSEEEEEEESSTCCCCCTB-TTHHH---------H-SEEEEE--SHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCc--cHH-HHHHhcCeEEEEecCCCccHHHHHhhhhhh---------hccEEEEeCCChHHHHHHHH
Confidence            367788999987532  222 235678999999977544433333222222         35688999999654322 33


Q ss_pred             HHHhhhCCCCCC--CceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          114 EVCEGLGLFDLK--NRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       114 ~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      ++...+.+....  ....+++.|||.++.||+++.+.+.++-...
T Consensus       188 ~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l  232 (266)
T PF03308_consen  188 DLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL  232 (266)
T ss_dssp             HHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            444444332222  2335799999999999999999988755443

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.25  E-value=1.1e-05  Score=61.74  Aligned_cols=83  Identities=12%  Similarity=0.079  Sum_probs=45.3

Q ss_pred             hcc-CCCEEEEEE-ECC----ChhhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCcee
Q 030931           57 YFN-NTDGLIYVV-DSL----DRERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW  129 (169)
Q Consensus        57 ~~~-~~~~ii~v~-d~~----~~~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  129 (169)
                      .++ .++..++|. |.+    .++.+... ..++.++.+    .++|.+++.||.|-.... ..++.+.+.    .+++.
T Consensus       140 VI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~----~~kPfiivlN~~dp~~~e-t~~l~~~l~----eky~v  210 (492)
T TIGR02836       140 VIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE----LNKPFIILLNSTHPYHPE-TEALRQELE----EKYDV  210 (492)
T ss_pred             HHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh----cCCCEEEEEECcCCCCch-hHHHHHHHH----HHhCC
Confidence            444 889999998 764    12233322 345555532    479999999999943221 222222221    23345


Q ss_pred             EEEEeeeccCC--CHHHHHHH
Q 030931          130 HIQGTCALKGD--GLYEGLDW  148 (169)
Q Consensus       130 ~~~~~Sa~~~~--gi~~~~~~  148 (169)
                      +++.+|+..-.  .|..++..
T Consensus       211 pvl~v~c~~l~~~DI~~il~~  231 (492)
T TIGR02836       211 PVLAMDVESMRESDILSVLEE  231 (492)
T ss_pred             ceEEEEHHHcCHHHHHHHHHH
Confidence            66777776443  34444443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.22  E-value=3.7e-06  Score=59.18  Aligned_cols=57  Identities=23%  Similarity=0.222  Sum_probs=39.9

Q ss_pred             CCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931           94 NSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus        94 ~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                      ..|.++++||+|+.+...  ..++...+..   .....+++++||+++.|++++|+++.+..
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~---~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKK---INPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHH---hCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            467899999999975322  2233332221   11235799999999999999999998753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.22  E-value=3e-06  Score=64.10  Aligned_cols=70  Identities=16%  Similarity=0.109  Sum_probs=47.4

Q ss_pred             ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEECC-----------------EEEEEEEcCCCCCc----hhh
Q 030931            2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYKN-----------------VIFTVWDVGGQEKL----RPL   53 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~----~~~   53 (169)
                      |++.+.+|||||+|+++.       .+++|+..+...+....                 ..+.+.|+||...-    ..+
T Consensus         7 IVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~gl   86 (364)
T PRK09601          7 IVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGL   86 (364)
T ss_pred             EECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCChHHHH
Confidence            577999999999997732       24455555544444432                 35899999995431    122


Q ss_pred             ---HHhhccCCCEEEEEEECC
Q 030931           54 ---WRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus        54 ---~~~~~~~~~~ii~v~d~~   71 (169)
                         .-..++.+|++++|+|..
T Consensus        87 g~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         87 GNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHhCCEEEEEEeCC
Confidence               223467899999999984

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.22  E-value=5.1e-06  Score=66.85  Aligned_cols=106  Identities=11%  Similarity=0.044  Sum_probs=62.7

Q ss_pred             CccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCch-------hh---HHhhcc--C
Q 030931            1 MLRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLR-------PL---WRHYFN--N   60 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~---~~~~~~--~   60 (169)
                      +|++++|+||||++|.+....        ..|...........+..+.++||||-....       .+   ...+++  .
T Consensus       122 vLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~g  201 (763)
T TIGR00993       122 LVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNP  201 (763)
T ss_pred             EEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCC
Confidence            367899999999999763221        122222222233467889999999976431       11   112333  5


Q ss_pred             CCEEEEEEECCChhhH-H--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           61 TDGLIYVVDSLDRERI-G--KAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        61 ~~~ii~v~d~~~~~~~-~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      +|++++|..++..... +  .+.+.+.+++....  -.-+|||.|+.|...
T Consensus       202 pDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lp  250 (763)
T TIGR00993       202 PDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAP  250 (763)
T ss_pred             CCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCC
Confidence            8999999877533221 2  22334444444222  245889999999764

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.21  E-value=5.1e-05  Score=54.29  Aligned_cols=144  Identities=15%  Similarity=0.021  Sum_probs=91.9

Q ss_pred             ccccCCCCCceeeeecee-------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchh-------hHHhhccCCCEEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP-------LWRHYFNNTDGLIYV   67 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~~~ii~v   67 (169)
                      |++=|-.|||||+-.++.       ..+.|...-...+.+.+..+++.|.||.-.-.+       +.-...+.||.+++|
T Consensus        67 lIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMv  146 (364)
T KOG1486|consen   67 LIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMV  146 (364)
T ss_pred             EecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEE
Confidence            445678899999987632       223344444445677899999999999433222       223356789999999


Q ss_pred             EECCChhhHHHH-HHHHH----------------------------------------HHhcC-----------------
Q 030931           68 VDSLDRERIGKA-KQEFQ----------------------------------------AIIKD-----------------   89 (169)
Q Consensus        68 ~d~~~~~~~~~~-~~~~~----------------------------------------~~~~~-----------------   89 (169)
                      .|++..+.-..+ ...++                                        .++++                 
T Consensus       147 LDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ReD~t~D  226 (364)
T KOG1486|consen  147 LDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFREDCTVD  226 (364)
T ss_pred             ecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEecCCChH
Confidence            999865432211 11111                                        11110                 


Q ss_pred             -------CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931           90 -------PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE  155 (169)
Q Consensus        90 -------~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  155 (169)
                             ....-++++-|-||+|.   .+.+++...-.+.       .-+.+|+.-+.|++.+++.+.+.+.-
T Consensus       227 dfIDvi~gnr~Y~~ClYvYnKID~---vs~eevdrlAr~P-------nsvViSC~m~lnld~lle~iWe~l~L  289 (364)
T KOG1486|consen  227 DFIDVIEGNRVYIKCLYVYNKIDQ---VSIEEVDRLARQP-------NSVVISCNMKLNLDRLLERIWEELNL  289 (364)
T ss_pred             HHHHHHhccceEEEEEEEeeccce---ecHHHHHHHhcCC-------CcEEEEeccccCHHHHHHHHHHHhce
Confidence                   11113688888999985   4556655433322       26889999999999999999998765

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.18  E-value=8.9e-07  Score=67.19  Aligned_cols=93  Identities=19%  Similarity=0.127  Sum_probs=68.2

Q ss_pred             eeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030931           24 LVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK  103 (169)
Q Consensus        24 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK  103 (169)
                      |+.--..+++|++++++++|||||-.|+-....+++-.|+++.|||.+..-.-..+..|.+.-     ..++|-..++||
T Consensus        89 tiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqad-----k~~ip~~~fink  163 (753)
T KOG0464|consen   89 TIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD-----KFKIPAHCFINK  163 (753)
T ss_pred             eeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcc-----ccCCchhhhhhh
Confidence            333344568889999999999999999999999999999999999997654333444454332     247899999999


Q ss_pred             CCCCCCC---CHhHHHhhhCC
Q 030931          104 QDMKGAM---TPMEVCEGLGL  121 (169)
Q Consensus       104 ~Dl~~~~---~~~~~~~~~~~  121 (169)
                      +|...+.   ..+.+.+.++.
T Consensus       164 mdk~~anfe~avdsi~ekl~a  184 (753)
T KOG0464|consen  164 MDKLAANFENAVDSIEEKLGA  184 (753)
T ss_pred             hhhhhhhhhhHHHHHHHHhCC
Confidence            9976432   33445555543

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.15  E-value=5.7e-06  Score=71.62  Aligned_cols=106  Identities=11%  Similarity=0.086  Sum_probs=62.0

Q ss_pred             CccccCCCCCceeeeec------eee--eeeeeeE-EEEEEEE-CCEEEEEEEcCCCCC--------chhhHHhhcc---
Q 030931            1 MLRVKQPYCTSCTLVKF------YLL--FLLLVRF-NVEKVQY-KNVIFTVWDVGGQEK--------LRPLWRHYFN---   59 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f------~~~--~~~t~~~-~~~~~~~-~~~~~~i~D~~G~~~--------~~~~~~~~~~---   59 (169)
                      |+++.+|+||||++++-      .+.  ...+.++ ....+++ -.-...++||+|..-        ....|..++.   
T Consensus       115 lviG~~gsGKtt~l~~sgl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~  194 (1169)
T TIGR03348       115 LVIGPPGSGKTTLLQNSGLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLR  194 (1169)
T ss_pred             EEECCCCCchhHHHHhCCCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHHHH
Confidence            57889999999999953      110  1111111 1122322 122345889999442        2334655543   


Q ss_pred             ------CCCEEEEEEECCChh-----hH----HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           60 ------NTDGLIYVVDSLDRE-----RI----GKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        60 ------~~~~ii~v~d~~~~~-----~~----~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                            ..+|+|+++|+.+.-     ..    ..++..+.++.+. ..-..||.++.+|+|+.
T Consensus       195 k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       195 KHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLL  256 (1169)
T ss_pred             HhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhh
Confidence                  589999999986432     11    2333444444332 22479999999999986

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.04  E-value=1e-05  Score=59.51  Aligned_cols=102  Identities=10%  Similarity=0.110  Sum_probs=56.1

Q ss_pred             CccccCCCCCceeeeec------eee---------eeeeeeEEEEEEEE----CCEEEEEEEcCCCCCch---hhHH---
Q 030931            1 MLRVKQPYCTSCTLVKF------YLL---------FLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLR---PLWR---   55 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f------~~~---------~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~---~~~~---   55 (169)
                      ||.+..|+|||||++.+      ...         ..++..+.......    -.+++.++||||-....   ..|.   
T Consensus         8 mVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~   87 (281)
T PF00735_consen    8 MVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIV   87 (281)
T ss_dssp             EEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHHHH
Confidence            67789999999999965      111         11222333333222    35789999999943211   1111   


Q ss_pred             --------hhc-------------cCCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           56 --------HYF-------------NNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        56 --------~~~-------------~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                              .++             ...|+++++++.+... +-.++ +.++.+-     ...++|-|+.|+|...
T Consensus        88 ~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls-----~~vNvIPvIaKaD~lt  156 (281)
T PF00735_consen   88 DYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLS-----KRVNVIPVIAKADTLT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHT-----TTSEEEEEESTGGGS-
T ss_pred             HHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhc-----ccccEEeEEecccccC
Confidence                    111             1569999999986432 11122 3444442     3578999999999754

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.03  E-value=1.2e-05  Score=59.07  Aligned_cols=101  Identities=22%  Similarity=0.187  Sum_probs=63.4

Q ss_pred             hccCCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--HHhhhCCCCCCCceeEEEE
Q 030931           57 YFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME--VCEGLGLFDLKNRKWHIQG  133 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~  133 (169)
                      -..+.+-.++|+.+.+++ +...+..++-..    ...++..++++||+|+.+......  ....+     ...+++.+.
T Consensus        76 ~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a----e~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y-----~~~gy~v~~  146 (301)
T COG1162          76 PVANNDQAIIVVSLVDPDFNTNLLDRYLVLA----EAGGIEPVIVLNKIDLLDDEEAAVKELLREY-----EDIGYPVLF  146 (301)
T ss_pred             cccccceEEEEEeccCCCCCHHHHHHHHHHH----HHcCCcEEEEEEccccCcchHHHHHHHHHHH-----HhCCeeEEE
Confidence            344577777888776654 334444444333    224777888899999976543332  22222     345678999


Q ss_pred             eeeccCCCHHHHHHHHHHHHHhhhccccccccccC
Q 030931          134 TCALKGDGLYEGLDWLASTLKEMRAAGYSSVGTSS  168 (169)
Q Consensus       134 ~Sa~~~~gi~~~~~~l~~~~~~~~~~~~~~~~~~s  168 (169)
                      +|++++.|++++.+.+...+.-  -.+.++.|+||
T Consensus       147 ~s~~~~~~~~~l~~~l~~~~sv--l~GqSGVGKSS  179 (301)
T COG1162         147 VSAKNGDGLEELAELLAGKITV--LLGQSGVGKST  179 (301)
T ss_pred             ecCcCcccHHHHHHHhcCCeEE--EECCCCCcHHH
Confidence            9999999999988877654221  22455666665

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=0.00026  Score=50.45  Aligned_cols=120  Identities=18%  Similarity=0.220  Sum_probs=73.6

Q ss_pred             CCEEEEEEEcCCCCCchhh---HHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhc-CCCCCCCeEEEEEeCCCCCCCC
Q 030931           35 KNVIFTVWDVGGQEKLRPL---WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIK-DPFMLNSVILVFANKQDMKGAM  110 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~---~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~piivv~nK~Dl~~~~  110 (169)
                      .-+.+++||.|||-.+-..   ....++++.++|+|+|+.+. -.+.+..+...+.+ ..-.+++-+=+++.|.|-....
T Consensus        73 sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd  151 (347)
T KOG3887|consen   73 SFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD  151 (347)
T ss_pred             hhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence            4578999999999876443   35678999999999998442 22333333322222 2334688899999999954321


Q ss_pred             C----HhHH----HhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          111 T----PMEV----CEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       111 ~----~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      .    .+++    .+.+.-..+..-...++-+|-.+.. |-+.|..++..+.+.
T Consensus       152 ~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIyDHS-IfEAFSkvVQkLipq  204 (347)
T KOG3887|consen  152 FKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIYDHS-IFEAFSKVVQKLIPQ  204 (347)
T ss_pred             hhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeecchH-HHHHHHHHHHHHhhh
Confidence            1    1111    1112111223445567777777665 888888887766553

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.01  E-value=1.8e-05  Score=64.02  Aligned_cols=63  Identities=21%  Similarity=0.239  Sum_probs=49.5

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh---hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQD  105 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~piivv~nK~D  105 (169)
                      +++.++++|+|||-.|.+......+-+|+++..+|+...   .+..-++   +.+.     .+..+++|+||+|
T Consensus        70 ~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlr---q~~~-----~~~~~~lvinkid  135 (887)
T KOG0467|consen   70 KDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLR---QAWI-----EGLKPILVINKID  135 (887)
T ss_pred             CceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHH---HHHH-----ccCceEEEEehhh
Confidence            789999999999999999999999999999999999643   2333222   2221     3566899999999

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.94  E-value=3.5e-05  Score=42.25  Aligned_cols=44  Identities=23%  Similarity=0.321  Sum_probs=27.8

Q ss_pred             CCCEEEEEEECCChhh--HHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030931           60 NTDGLIYVVDSLDRER--IGKAKQEFQAIIKDPFMLNSVILVFANKQD  105 (169)
Q Consensus        60 ~~~~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~piivv~nK~D  105 (169)
                      =.++++|++|++....  .++-..+++++....  .+.|+++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence            3689999999987654  455555666765433  5899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=97.90  E-value=0.00012  Score=55.44  Aligned_cols=116  Identities=20%  Similarity=0.101  Sum_probs=71.6

Q ss_pred             CEEEEEEEcCCCCCchhh--HHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-
Q 030931           36 NVIFTVWDVGGQEKLRPL--WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-  112 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~--~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-  112 (169)
                      +.-+.+.||.||+.+...  +-..=++.|..++++.+++-.+-     .-++-+......+.|++++.+|+|+.+.... 
T Consensus       200 DklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~-----~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~~  274 (527)
T COG5258         200 DKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK-----MTKEHLGIALAMELPVIVVVTKIDMVPDDRFQ  274 (527)
T ss_pred             ccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch-----hhhHhhhhhhhhcCCEEEEEEecccCcHHHHH
Confidence            355889999999987543  33445678999999988764322     1112222222347999999999998653221 


Q ss_pred             ---hHHHhhhCC------------------CCCC--CceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          113 ---MEVCEGLGL------------------FDLK--NRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       113 ---~~~~~~~~~------------------~~~~--~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                         +++...+..                  ...+  ..-.|+|.+|+.+|+|+ ++++.+...++..+
T Consensus       275 ~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gl-dlL~e~f~~Lp~rr  341 (527)
T COG5258         275 GVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGL-DLLDEFFLLLPKRR  341 (527)
T ss_pred             HHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccH-HHHHHHHHhCCccc
Confidence               222221110                  0111  12468999999999995 45666666665554

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=4.9e-05  Score=56.51  Aligned_cols=104  Identities=20%  Similarity=0.209  Sum_probs=64.2

Q ss_pred             EEEEEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030931           27 FNVEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQ  104 (169)
Q Consensus        27 ~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~  104 (169)
                      ++.-++++  ....+-=.|+|||..|-...-.--.+.|+.|+|+..+|.. +.+.++.+-...+ .  .-..++++.||.
T Consensus       105 In~aHveYeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQ-V--GV~~ivvfiNKv  180 (449)
T KOG0460|consen  105 INAAHVEYETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQ-V--GVKHIVVFINKV  180 (449)
T ss_pred             EeeeeeeeeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHH-c--CCceEEEEEecc
Confidence            44444444  6778888999999887765555567789999999998853 3333433222211 1  235688999999


Q ss_pred             CCCCCCC--------HhHHHhhhCCCCCCCceeEEEEeeec
Q 030931          105 DMKGAMT--------PMEVCEGLGLFDLKNRKWHIQGTCAL  137 (169)
Q Consensus       105 Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Sa~  137 (169)
                      |+.+..+        .+|+...+++   .--..|++.-||.
T Consensus       181 D~V~d~e~leLVEmE~RElLse~gf---~Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  181 DLVDDPEMLELVEMEIRELLSEFGF---DGDNTPVIRGSAL  218 (449)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHcCC---CCCCCCeeecchh
Confidence            9974322        2223333332   2234678887764

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=97.86  E-value=5.4e-05  Score=54.35  Aligned_cols=142  Identities=16%  Similarity=0.027  Sum_probs=86.4

Q ss_pred             ccCCCCCceeeeeceeeeeeeeeEEE-------EEEEECCEEEEEEEcCCCCCc-------hhhHHhhccCCCEEEEEEE
Q 030931            4 VKQPYCTSCTLVKFYLLFLLLVRFNV-------EKVQYKNVIFTVWDVGGQEKL-------RPLWRHYFNNTDGLIYVVD   69 (169)
Q Consensus         4 ~~~~~~Ktsll~~f~~~~~~t~~~~~-------~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~~ii~v~d   69 (169)
                      +=+-.|||||+..+...+.+.-...+       ....+++-++++.|.||.-.-       ..+.-...+.|+.+++|.|
T Consensus        66 gFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli~~vld  145 (358)
T KOG1487|consen   66 GFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLD  145 (358)
T ss_pred             ecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccEEEEEee
Confidence            34678999999977443333322222       224467889999999994321       1223335678999999999


Q ss_pred             CCChhhHHHHH-----------------------------------------HHHHHH------------------hcC-
Q 030931           70 SLDRERIGKAK-----------------------------------------QEFQAI------------------IKD-   89 (169)
Q Consensus        70 ~~~~~~~~~~~-----------------------------------------~~~~~~------------------~~~-   89 (169)
                      +..+-+-..+.                                         ..+.+.                  ... 
T Consensus       146 ~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~DdLIdvV  225 (358)
T KOG1487|consen  146 VLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATADDLIDVV  225 (358)
T ss_pred             ccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchhhhhhhh
Confidence            87443211111                                         111111                  110 


Q ss_pred             -CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931           90 -PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE  155 (169)
Q Consensus        90 -~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  155 (169)
                       ....-+|++.+.||+|-   .+.+|+.-.+..       ...+++||.+++|++++++.+.+.+.-
T Consensus       226 egnr~yVp~iyvLNkIds---ISiEELdii~~i-------phavpISA~~~wn~d~lL~~mweyL~L  282 (358)
T KOG1487|consen  226 EGNRIYVPCIYVLNKIDS---ISIEELDIIYTI-------PHAVPISAHTGWNFDKLLEKMWEYLKL  282 (358)
T ss_pred             ccCceeeeeeeeecccce---eeeeccceeeec-------cceeecccccccchHHHHHHHhhcchh
Confidence             11124799999999985   344444333322       248999999999999999999987655

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.70  E-value=1.5e-05  Score=52.65  Aligned_cols=46  Identities=13%  Similarity=-0.045  Sum_probs=29.0

Q ss_pred             CccccCCCCCceeeeeceeeeeeeee------EEEEEEEECCEEEEEEEcCCC
Q 030931            1 MLRVKQPYCTSCTLVKFYLLFLLLVR------FNVEKVQYKNVIFTVWDVGGQ   47 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~~~t~~------~~~~~~~~~~~~~~i~D~~G~   47 (169)
                      ++++.+++|||||+|++.....+...      .....+..++ .+.+|||||-
T Consensus        87 ~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~  138 (141)
T cd01857          87 GLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL  138 (141)
T ss_pred             EEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence            46789999999999987333322111      1122233333 5899999996

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.60  E-value=3.2e-05  Score=56.73  Aligned_cols=121  Identities=11%  Similarity=0.029  Sum_probs=72.2

Q ss_pred             EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH-H
Q 030931           37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME-V  115 (169)
Q Consensus        37 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~-~  115 (169)
                      ..+.+.|+|||+-.-.....-..-.|++++.+..+....-.+..+.+..+ +  .++=..++++-||+|+..+....+ .
T Consensus       125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav-e--iM~LkhiiilQNKiDli~e~~A~eq~  201 (466)
T KOG0466|consen  125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV-E--IMKLKHIIILQNKIDLIKESQALEQH  201 (466)
T ss_pred             EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH-H--HhhhceEEEEechhhhhhHHHHHHHH
Confidence            45788999999764433322223347777777665433222222222222 1  112357999999999975433222 1


Q ss_pred             HhhhCCC-CCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhhccc
Q 030931          116 CEGLGLF-DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRAAG  160 (169)
Q Consensus       116 ~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~~~  160 (169)
                      .....+. .-...+.+++++||.-+.||+-+.+.++..+.-+.+..
T Consensus       202 e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf  247 (466)
T KOG0466|consen  202 EQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDF  247 (466)
T ss_pred             HHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcccc
Confidence            1111111 11235678999999999999999999998887765443

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=97.52  E-value=0.00026  Score=53.16  Aligned_cols=103  Identities=11%  Similarity=0.191  Sum_probs=61.2

Q ss_pred             CccccCCCCCceeeeecee---------------eeeeeeeEEEEEEEE--C--CEEEEEEEcCCCCCc---hhhH----
Q 030931            1 MLRVKQPYCTSCTLVKFYL---------------LFLLLVRFNVEKVQY--K--NVIFTVWDVGGQEKL---RPLW----   54 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~---------------~~~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~~---~~~~----   54 (169)
                      |+.+..|+||||++|.+..               ...||+.+.......  +  ...+++.||||-..+   ...|    
T Consensus        27 m~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~  106 (373)
T COG5019          27 MVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIV  106 (373)
T ss_pred             EEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHH
Confidence            6788999999999997511               123555555544333  3  467888999994332   1112    


Q ss_pred             -------Hhhc--------------cCCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931           55 -------RHYF--------------NNTDGLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGA  109 (169)
Q Consensus        55 -------~~~~--------------~~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~  109 (169)
                             ..|+              ...|++++.+-++.. .+..+. ..+..+-     +..-+|-|+-|+|....
T Consensus       107 ~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~lT~  177 (373)
T COG5019         107 DYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS-----KRVNLIPVIAKADTLTD  177 (373)
T ss_pred             HHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh-----cccCeeeeeeccccCCH
Confidence                   2222              157999999987543 222222 2233332     24568888999997643

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.00012  Score=55.07  Aligned_cols=70  Identities=17%  Similarity=0.106  Sum_probs=49.6

Q ss_pred             ccccCCCCCceeeeec-------eeeeeeeeeEEEEEEEE------------------CCEEEEEEEcCCC-------CC
Q 030931            2 LRVKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQY------------------KNVIFTVWDVGGQ-------EK   49 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~------------------~~~~~~i~D~~G~-------~~   49 (169)
                      |.++|.+|||||+|..       .+-++.|+..+...+..                  -...++++|++|.       +.
T Consensus         7 IVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeG   86 (372)
T COG0012           7 IVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEG   86 (372)
T ss_pred             EecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCC
Confidence            4569999999999965       34556677655443222                  2366899999882       23


Q ss_pred             chhhHHhhccCCCEEEEEEECC
Q 030931           50 LRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus        50 ~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      .....-..++.+|+++.|+|+.
T Consensus        87 LGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          87 LGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             cchHHHHhhhhcCeEEEEEEec
Confidence            4444556688999999999987

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.46  E-value=0.00036  Score=43.71  Aligned_cols=95  Identities=15%  Similarity=0.062  Sum_probs=55.8

Q ss_pred             cCCCCCceeeeeceeeeeeeeeEEEEEEEE---CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHH
Q 030931            5 KQPYCTSCTLVKFYLLFLLLVRFNVEKVQY---KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ   81 (169)
Q Consensus         5 ~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~   81 (169)
                      |+|.|||++...+.......-|..+.-++.   .+..+.+.|+|+....  .....+..+|.++++.+. +..++.....
T Consensus         8 kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~-~~~s~~~~~~   84 (106)
T cd03111           8 KGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQ-DLPSIRNAKR   84 (106)
T ss_pred             CCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecC-ChHHHHHHHH
Confidence            899999998775411111110222222222   1227899999987533  334567889999999976 4455666665


Q ss_pred             HHHHHhcCCCCC-CCeEEEEEeC
Q 030931           82 EFQAIIKDPFML-NSVILVFANK  103 (169)
Q Consensus        82 ~~~~~~~~~~~~-~~piivv~nK  103 (169)
                      +++.+.+.. .+ ...+.+|+|+
T Consensus        85 ~~~~l~~~~-~~~~~~~~lVvNr  106 (106)
T cd03111          85 LLELLRVLD-YSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHcC-CCCcCceEEEecC
Confidence            555543322 22 4467777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.43  E-value=0.00028  Score=53.24  Aligned_cols=103  Identities=15%  Similarity=0.186  Sum_probs=60.1

Q ss_pred             CccccCCCCCceeeeec-ee-------------eeeeeeeEEEEEEEE--C--CEEEEEEEcCCCCC-------chh---
Q 030931            1 MLRVKQPYCTSCTLVKF-YL-------------LFLLLVRFNVEKVQY--K--NVIFTVWDVGGQEK-------LRP---   52 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-~~-------------~~~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~-------~~~---   52 (169)
                      |+.+..|+|||||+|.+ ..             ....|+.+.......  +  ..++++.||||-..       ++.   
T Consensus        25 mvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~pi~~  104 (366)
T KOG2655|consen   25 MVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRPIVN  104 (366)
T ss_pred             EEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchhhhH
Confidence            66788999999999974 11             222244444444433  2  46778899999332       111   


Q ss_pred             ----hHHhhc-----------c--CCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931           53 ----LWRHYF-----------N--NTDGLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGA  109 (169)
Q Consensus        53 ----~~~~~~-----------~--~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~  109 (169)
                          ....|+           .  ..|++++.+.++.. .+.... ..++.+-     ....+|-|+-|+|....
T Consensus       105 yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~-----~~vNiIPVI~KaD~lT~  173 (366)
T KOG2655|consen  105 YIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS-----KKVNLIPVIAKADTLTK  173 (366)
T ss_pred             HHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh-----ccccccceeeccccCCH
Confidence                112222           1  67999999987543 111111 2223331     35778889999997543

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.38  E-value=9.2e-05  Score=50.58  Aligned_cols=43  Identities=23%  Similarity=0.172  Sum_probs=26.9

Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHH-hcCCCCCCCeEEEEEeCCCCCC
Q 030931           62 DGLIYVVDSLDRERIGKAKQEFQAI-IKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        62 ~~ii~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      |++++|+|+.++.+-.. ..+.+.+ +..   .+.|+++|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~---~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVLQAG---GNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHHhcc---CCCCEEEEEehhhcCC
Confidence            68999999976532211 1112221 221   3589999999999964

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=97.31  E-value=8.7e-05  Score=53.75  Aligned_cols=140  Identities=12%  Similarity=-0.017  Sum_probs=72.4

Q ss_pred             ccCCCCCceeeeec----------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCC----------CchhhHHhhccCCCE
Q 030931            4 VKQPYCTSCTLVKF----------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQE----------KLRPLWRHYFNNTDG   63 (169)
Q Consensus         4 ~~~~~~Ktsll~~f----------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~~~~~~   63 (169)
                      +-...|||||++.+          .....-|..+++  +.. +-.+.+.|.||-.          .+..+...|+..-+-
T Consensus       143 g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~--f~v-~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~n  219 (320)
T KOG2486|consen  143 GRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINH--FHV-GKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLEREN  219 (320)
T ss_pred             cCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeee--eec-cceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhh
Confidence            45668999999954          112222333332  222 3457888999911          123344445543333


Q ss_pred             ---EEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCCC----CCceeEEE
Q 030931           64 ---LIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDL----KNRKWHIQ  132 (169)
Q Consensus        64 ---ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~----~~~~~~~~  132 (169)
                         +.+.+|++-+  +..+.....+++.+   .++|..+|.||||......    ..+.........+    -....+|+
T Consensus       220 Lv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~  294 (320)
T KOG2486|consen  220 LVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWI  294 (320)
T ss_pred             hheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCce
Confidence               3344455422  22222222233333   3799999999999753221    0011111101111    11234688


Q ss_pred             EeeeccCCCHHHHHHHHHH
Q 030931          133 GTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus       133 ~~Sa~~~~gi~~~~~~l~~  151 (169)
                      .+|+.++.|++.++..+..
T Consensus       295 ~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  295 YVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             eeecccccCceeeeeehhh
Confidence            8999999999987765543

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=97.30  E-value=0.0005  Score=49.01  Aligned_cols=74  Identities=14%  Similarity=-0.020  Sum_probs=47.6

Q ss_pred             ccccCCCCCceeeeeceee----------eeeeeeEEEEEEEE---CCEEEEEEEcCCCCCchh------hHHhhccC--
Q 030931            2 LRVKQPYCTSCTLVKFYLL----------FLLLVRFNVEKVQY---KNVIFTVWDVGGQEKLRP------LWRHYFNN--   60 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~----------~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~------~~~~~~~~--   60 (169)
                      +.+.+++|||+|+|++...          ...|.|+-......   ++..+.+.||+|......      .....+..  
T Consensus        12 v~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~ll   91 (224)
T cd01851          12 VFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATLL   91 (224)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHHHH
Confidence            4679999999999987333          23345544444433   368899999999654321      12223334  


Q ss_pred             CCEEEEEEECCChhh
Q 030931           61 TDGLIYVVDSLDRER   75 (169)
Q Consensus        61 ~~~ii~v~d~~~~~~   75 (169)
                      ++.+|+..+......
T Consensus        92 ss~~i~n~~~~~~~~  106 (224)
T cd01851          92 SSVLIYNSWETILGD  106 (224)
T ss_pred             hCEEEEeccCcccHH
Confidence            889998888765443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>smart00053 DYNc Dynamin, GTPase

Probab=97.29  E-value=0.0016  Score=46.89  Aligned_cols=69  Identities=12%  Similarity=0.093  Sum_probs=43.5

Q ss_pred             EEEEEEEcCCCCCc-------------hhhHHhhcc-CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030931           37 VIFTVWDVGGQEKL-------------RPLWRHYFN-NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN  102 (169)
Q Consensus        37 ~~~~i~D~~G~~~~-------------~~~~~~~~~-~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~n  102 (169)
                      ..+.+.||||-...             ..+...|++ ..+.+++|+|....-.-.......+.+    ...+.|+++|+|
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l----d~~~~rti~ViT  200 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV----DPQGERTIGVIT  200 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH----HHcCCcEEEEEE
Confidence            66899999997421             224556777 456899999875422212222233333    113689999999


Q ss_pred             CCCCCCC
Q 030931          103 KQDMKGA  109 (169)
Q Consensus       103 K~Dl~~~  109 (169)
                      |.|..+.
T Consensus       201 K~D~~~~  207 (240)
T smart00053      201 KLDLMDE  207 (240)
T ss_pred             CCCCCCc
Confidence            9998653

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.29  E-value=0.00073  Score=44.47  Aligned_cols=98  Identities=13%  Similarity=0.062  Sum_probs=59.2

Q ss_pred             ccCCCCCceeeeec----eeeeeeeeeEEEEE-EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHH
Q 030931            4 VKQPYCTSCTLVKF----YLLFLLLVRFNVEK-VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK   78 (169)
Q Consensus         4 ~~~~~~Ktsll~~f----~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~   78 (169)
                      .|+|+|||++-..+    ......+.-++.-. ...-.+.+.++|+|+..  .......+..+|.++++.+.+ ..++..
T Consensus         7 ~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~   83 (139)
T cd02038           7 GKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITD   83 (139)
T ss_pred             CCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHH
Confidence            48999999987744    22222222221110 00012778999999853  334456788999999999874 344554


Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931           79 AKQEFQAIIKDPFMLNSVILVFANKQDM  106 (169)
Q Consensus        79 ~~~~~~~~~~~~~~~~~piivv~nK~Dl  106 (169)
                      ....++.+.+..  ...++.++.|+.+.
T Consensus        84 ~~~~l~~l~~~~--~~~~~~lVvN~~~~  109 (139)
T cd02038          84 AYALIKKLAKQL--RVLNFRVVVNRAES  109 (139)
T ss_pred             HHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence            444444443322  35578899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>TIGR00092 GTP-binding protein YchF

Probab=97.22  E-value=0.00097  Score=50.77  Aligned_cols=70  Identities=14%  Similarity=0.010  Sum_probs=47.5

Q ss_pred             ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEEC-----------------CEEEEEEEcCCCCC-------
Q 030931            2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYK-----------------NVIFTVWDVGGQEK-------   49 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~-------   49 (169)
                      |.+.+.+|||||++.++..        ++.|+..+...+...                 ...+.+.|+||.-.       
T Consensus         7 ivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~G   86 (368)
T TIGR00092         7 IVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEG   86 (368)
T ss_pred             EECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcccC
Confidence            4678999999999976322        333455444444432                 34689999999533       


Q ss_pred             chhhHHhhccCCCEEEEEEECC
Q 030931           50 LRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus        50 ~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      .....-..++.+|++++|+|..
T Consensus        87 lgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        87 LGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cchHHHHHHHhCCEEEEEEeCC
Confidence            2223445678999999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.12  E-value=0.0078  Score=45.83  Aligned_cols=105  Identities=17%  Similarity=0.133  Sum_probs=61.7

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhcc--CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFN--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--  111 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~--~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--  111 (169)
                      ..-+.++|.+|+.+|....-..+.  ..|..++|+.+...-.- ..++.+-.++.    -++|.+++.+|+|+.+.-.  
T Consensus       248 SKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~~  322 (591)
T KOG1143|consen  248 SKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIAA----LNIPFFVLVTKMDLVDRQGLK  322 (591)
T ss_pred             cceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHHH----hCCCeEEEEEeeccccchhHH
Confidence            345889999999988765544443  25778888877532110 11111212211    2799999999999976421  


Q ss_pred             --HhHHHhhhCCC---------------------CCCCceeEEEEeeeccCCCHHHH
Q 030931          112 --PMEVCEGLGLF---------------------DLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus       112 --~~~~~~~~~~~---------------------~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                        ..++++.+...                     .....-.|+|.+|+.+|+|+.-+
T Consensus       323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll  379 (591)
T KOG1143|consen  323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL  379 (591)
T ss_pred             HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence              22333322211                     11123368999999999996543

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.12  E-value=0.002  Score=55.68  Aligned_cols=107  Identities=14%  Similarity=0.139  Sum_probs=62.4

Q ss_pred             CccccCCCCCceeeee----c--e--eeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCc--------hhhHHhh------
Q 030931            1 MLRVKQPYCTSCTLVK----F--Y--LLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKL--------RPLWRHY------   57 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~----f--~--~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~--------~~~~~~~------   57 (169)
                      |+++.+|+||||++..    |  .  .....+.+..+..+++ -.-.--++||+|.+.-        ...|..+      
T Consensus       129 ~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk  208 (1188)
T COG3523         129 MVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKK  208 (1188)
T ss_pred             EEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHHHH
Confidence            6889999999999983    3  1  1111111122344444 2334667899985432        2344433      


Q ss_pred             ---ccCCCEEEEEEECCChhh----H-----HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           58 ---FNNTDGLIYVVDSLDRER----I-----GKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        58 ---~~~~~~ii~v~d~~~~~~----~-----~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                         .+..+|||+..|+.+.-+    .     ..++.-++++.. ...-..|+.+++||.|+..
T Consensus       209 ~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~-tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         209 YRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRE-TLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             hccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHH-hhccCCceEEEEecccccc
Confidence               346799999999864221    1     112222334422 2224799999999999853

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.09  E-value=0.0013  Score=40.88  Aligned_cols=76  Identities=13%  Similarity=0.061  Sum_probs=47.5

Q ss_pred             cCCCCCceeeeeceeeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHH
Q 030931            5 KQPYCTSCTLVKFYLLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEF   83 (169)
Q Consensus         5 ~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~   83 (169)
                      |+|+|||++...+..... ..+..+..++. ..+.+.++|+|+....  .....+..+|.++++.+. +..++.....++
T Consensus         8 kgG~Gkst~~~~la~~~~-~~~~~vl~~d~d~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~-~~~s~~~~~~~~   83 (104)
T cd02042           8 KGGVGKTTTAVNLAAALA-RRGKRVLLIDLDPQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP-SPLDLDGLEKLL   83 (104)
T ss_pred             CCCcCHHHHHHHHHHHHH-hCCCcEEEEeCCCCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC-CHHHHHHHHHHH
Confidence            899999998774411111 12222333322 2377899999987532  334677889999999987 445566665554


Q ss_pred             H
Q 030931           84 Q   84 (169)
Q Consensus        84 ~   84 (169)
                      +
T Consensus        84 ~   84 (104)
T cd02042          84 E   84 (104)
T ss_pred             H
Confidence            4

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=96.98  E-value=0.0031  Score=48.24  Aligned_cols=120  Identities=18%  Similarity=0.153  Sum_probs=73.8

Q ss_pred             eeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh---hhHHH---HHHHHHHHhcCCCCCCCe
Q 030931           23 LLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGK---AKQEFQAIIKDPFMLNSV   96 (169)
Q Consensus        23 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~---~~~~~---~~~~~~~~~~~~~~~~~p   96 (169)
                      -|+++....++....++.|.|.|||..|-...-.-..+||..++|+.+...   ..|+.   .+.... +.  ....-..
T Consensus       143 KtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~-La--kt~gv~~  219 (501)
T KOG0459|consen  143 KTVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAM-LA--KTAGVKH  219 (501)
T ss_pred             ceeeeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHH-HH--Hhhccce
Confidence            455555666777899999999999998876655566788999999877321   11211   111111 11  1123467


Q ss_pred             EEEEEeCCCCCCCCC----HhHHHh-------hhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931           97 ILVFANKQDMKGAMT----PMEVCE-------GLGLFDLKNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus        97 iivv~nK~Dl~~~~~----~~~~~~-------~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                      .+++.||+|-+...-    ..+..+       .++..  ......++++|..+|.++++...
T Consensus       220 lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n--~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  220 LIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFN--PKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             EEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhccc--CCCCceeeecccccccchhhccc
Confidence            899999999754211    111111       11111  23345699999999999988654

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=96.96  E-value=0.0038  Score=44.67  Aligned_cols=102  Identities=12%  Similarity=0.130  Sum_probs=55.1

Q ss_pred             CccccCCCCCceeeeec-----e--------e-eeeeeeeEEEE--EEEEC--CEEEEEEEcCCCCC---chhhHH----
Q 030931            1 MLRVKQPYCTSCTLVKF-----Y--------L-LFLLLVRFNVE--KVQYK--NVIFTVWDVGGQEK---LRPLWR----   55 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~--------~-~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~---~~~~~~----   55 (169)
                      |+.+..|.|||||+|.+     .        . -+..|..+...  .+..+  ..++++.||||-..   ....|.    
T Consensus        50 MVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI~k  129 (336)
T KOG1547|consen   50 MVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPIEK  129 (336)
T ss_pred             EEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHHHH
Confidence            66778999999999953     0        0 11223333322  23334  45677889999322   122222    


Q ss_pred             -------hhcc--------------CCCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           56 -------HYFN--------------NTDGLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        56 -------~~~~--------------~~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                             .|++              ..+++++.+..+... +.-+. +.++.+.     .-.-++-|+-|.|-..
T Consensus       130 yIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt-----~vvNvvPVIakaDtlT  198 (336)
T KOG1547|consen  130 YINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLT-----EVVNVVPVIAKADTLT  198 (336)
T ss_pred             HHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHh-----hhheeeeeEeeccccc
Confidence                   2222              468888888776432 21111 1222221     2345778888999653

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=96.91  E-value=0.0056  Score=46.02  Aligned_cols=77  Identities=21%  Similarity=0.086  Sum_probs=42.8

Q ss_pred             CCCEEEEEEECCChhhHHH-HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeecc
Q 030931           60 NTDGLIYVVDSLDRERIGK-AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALK  138 (169)
Q Consensus        60 ~~~~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  138 (169)
                      ..|++|-|+|+.+...... +.+...+.+...      =++++||.|+.++...+.+...+...   +-..+++.+|. .
T Consensus       116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv~~~~l~~l~~~l~~l---np~A~i~~~~~-~  185 (323)
T COG0523         116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLVDAEELEALEARLRKL---NPRARIIETSY-G  185 (323)
T ss_pred             eeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCCCHHHHHHHHHHHHHh---CCCCeEEEccc-c
Confidence            3588999999876544332 445555554432      47889999997654333333333211   22345777776 3


Q ss_pred             CCCHHHHH
Q 030931          139 GDGLYEGL  146 (169)
Q Consensus       139 ~~gi~~~~  146 (169)
                      +....+++
T Consensus       186 ~~~~~~ll  193 (323)
T COG0523         186 DVDLAELL  193 (323)
T ss_pred             CCCHHHhh
Confidence            33344333

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=96.89  E-value=0.00038  Score=51.18  Aligned_cols=44  Identities=9%  Similarity=-0.062  Sum_probs=28.3

Q ss_pred             CccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCC
Q 030931            1 MLRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQ   47 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~   47 (169)
                      ++++-+++|||||+|++....        ..|...  ..+..+. .+.++||||.
T Consensus       122 ~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~-~~~l~DtPG~  173 (276)
T TIGR03596       122 MIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD-GLELLDTPGI  173 (276)
T ss_pred             EEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC-CEEEEECCCc
Confidence            356789999999999874322        222222  2233322 5799999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.86  E-value=0.0047  Score=46.89  Aligned_cols=76  Identities=18%  Similarity=0.205  Sum_probs=49.0

Q ss_pred             EEEEEEcCCCCC-----------chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931           38 IFTVWDVGGQEK-----------LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM  106 (169)
Q Consensus        38 ~~~i~D~~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  106 (169)
                      .++|+||||.-.           |......+...+|.|+++||....+--++....+..+..    ..=.+-+|.||.|.
T Consensus       148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~EdkiRVVLNKADq  223 (532)
T KOG1954|consen  148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HEDKIRVVLNKADQ  223 (532)
T ss_pred             heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----CcceeEEEeccccc
Confidence            489999999433           344455677899999999998654322333333444422    23457889999997


Q ss_pred             CCCCCHhHHHhhhC
Q 030931          107 KGAMTPMEVCEGLG  120 (169)
Q Consensus       107 ~~~~~~~~~~~~~~  120 (169)
                      .   +.+++...++
T Consensus       224 V---dtqqLmRVyG  234 (532)
T KOG1954|consen  224 V---DTQQLMRVYG  234 (532)
T ss_pred             c---CHHHHHHHHH
Confidence            5   4455555544

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.84  E-value=0.0027  Score=38.31  Aligned_cols=93  Identities=12%  Similarity=-0.058  Sum_probs=52.7

Q ss_pred             ccCCCCCceeeeeceeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhh-HHhhccCCCEEEEEEECCChhhHHHHHHH
Q 030931            4 VKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL-WRHYFNNTDGLIYVVDSLDRERIGKAKQE   82 (169)
Q Consensus         4 ~~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~~~ii~v~d~~~~~~~~~~~~~   82 (169)
                      ++.|+|||++...+...... .+..+..++    .+.+.|+++....... .......++.++++++... .+.......
T Consensus         6 g~~G~Gktt~~~~l~~~l~~-~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~-~~~~~~~~~   79 (99)
T cd01983           6 GKGGVGKTTLAANLAAALAK-RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEA-LAVLGARRL   79 (99)
T ss_pred             CCCCCCHHHHHHHHHHHHHH-CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCch-hhHHHHHHH
Confidence            46799999998865222211 233333333    7899999987543321 1456678999999998743 344444433


Q ss_pred             HHHHhcCCCCCCCeEEEEEe
Q 030931           83 FQAIIKDPFMLNSVILVFAN  102 (169)
Q Consensus        83 ~~~~~~~~~~~~~piivv~n  102 (169)
                      .+...........+..++.|
T Consensus        80 ~~~~~~~~~~~~~~~~vv~N   99 (99)
T cd01983          80 TEVVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             HHHHHHhhccCCceEEEEeC
Confidence            32232222333555666554

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=96.76  E-value=0.00063  Score=50.34  Aligned_cols=45  Identities=9%  Similarity=-0.130  Sum_probs=28.8

Q ss_pred             CccccCCCCCceeeeecee--------eeeeeeeEEEEEEEECCEEEEEEEcCCCC
Q 030931            1 MLRVKQPYCTSCTLVKFYL--------LFLLLVRFNVEKVQYKNVIFTVWDVGGQE   48 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~--------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~   48 (169)
                      ++.+-+++|||||+|++..        .+..|.+..  .+..+ ..+.++||||..
T Consensus       125 ~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~-~~~~l~DtPGi~  177 (287)
T PRK09563        125 MIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKLG-KGLELLDTPGIL  177 (287)
T ss_pred             EEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEeC-CcEEEEECCCcC
Confidence            3567899999999997732        222233332  22222 358899999964

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.74  E-value=0.0055  Score=46.02  Aligned_cols=94  Identities=13%  Similarity=0.135  Sum_probs=52.2

Q ss_pred             CCEEEEEEEcCCCCCchhh----HHh---h-----ccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030931           35 KNVIFTVWDVGGQEKLRPL----WRH---Y-----FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN  102 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~----~~~---~-----~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~n  102 (169)
                      .++.+.+.||||.......    ...   .     -...+..++|.|++..  .+.+.+ ...+.+.    -.+.-++.|
T Consensus       195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giIlT  267 (318)
T PRK10416        195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGIILT  267 (318)
T ss_pred             CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEEEE
Confidence            4577999999997543221    111   1     1246788999999742  223222 2222211    135678999


Q ss_pred             CCCCCCCCCH--hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931          103 KQDMKGAMTP--MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus       103 K~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      |.|... .-.  -.+....        +.|+..++  +|++++++-
T Consensus       268 KlD~t~-~~G~~l~~~~~~--------~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        268 KLDGTA-KGGVVFAIADEL--------GIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCCCC-CccHHHHHHHHH--------CCCEEEEe--CCCChhhCc
Confidence            999532 221  2222222        34567776  888887653

>COG1161 Predicted GTPases [General function prediction only]

Probab=96.73  E-value=0.0037  Score=47.08  Aligned_cols=94  Identities=17%  Similarity=0.087  Sum_probs=60.7

Q ss_pred             EcCCCC-CchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC
Q 030931           43 DVGGQE-KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL  121 (169)
Q Consensus        43 D~~G~~-~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~  121 (169)
                      +.+|+. ++.......+..+|+++-|+|+.++.+-...  .+..+.+     +.|.++|+||+|+.+........+.+..
T Consensus        16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~--~l~~~v~-----~k~~i~vlNK~DL~~~~~~~~W~~~~~~   88 (322)
T COG1161          16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP--ELERIVK-----EKPKLLVLNKADLAPKEVTKKWKKYFKK   88 (322)
T ss_pred             CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc--cHHHHHc-----cCCcEEEEehhhcCCHHHHHHHHHHHHh
Confidence            446664 3455666788899999999999877544322  2344433     4556999999999764333444444432


Q ss_pred             CCCCCceeEEEEeeeccCCCHHHHHH
Q 030931          122 FDLKNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus       122 ~~~~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                          ..+...+.++++.+.+...+..
T Consensus        89 ----~~~~~~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          89 ----EEGIKPIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             ----cCCCccEEEEeecccCccchHH
Confidence                1144468888888887776664

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.73  E-value=0.0024  Score=49.71  Aligned_cols=65  Identities=20%  Similarity=0.133  Sum_probs=38.2

Q ss_pred             CEEEEEEEcCCCCCchhhHHh----h--ccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPLWRH----Y--FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~----~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      ++.+.|+||+|..........    +  ....+-+++|+|+.-...-...   ...+.+    .-.+--++.||.|-.
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~---a~~F~~----~~~~~g~IlTKlD~~  252 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ---AKAFKD----SVDVGSVIITKLDGH  252 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH---HHHHHh----ccCCcEEEEECccCC
Confidence            578999999997644322111    1  2256889999998643222222   222211    123677889999963

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=96.72  E-value=0.0016  Score=48.58  Aligned_cols=69  Identities=17%  Similarity=0.157  Sum_probs=47.4

Q ss_pred             cccCCCCCceeeeec-------eeeeeeeeeEEEEEEEE-----------------CCEEEEEEEcCCCCC-------ch
Q 030931            3 RVKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQY-----------------KNVIFTVWDVGGQEK-------LR   51 (169)
Q Consensus         3 ~~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~-----------------~~~~~~i~D~~G~~~-------~~   51 (169)
                      .+.+.+||||++|.+       .+-++.|+..+...+..                 -...++++|++|.-+       ..
T Consensus        26 VGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLG  105 (391)
T KOG1491|consen   26 VGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLG  105 (391)
T ss_pred             eeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCch
Confidence            468999999999966       23455666655444333                 246799999988322       23


Q ss_pred             hhHHhhccCCCEEEEEEECC
Q 030931           52 PLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus        52 ~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ...-..++.+|+++-|+++.
T Consensus       106 N~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen  106 NKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             HHHHHhhhhccceeEEEEec
Confidence            33445678899999999875

>PRK12288 GTPase RsgA; Reviewed

Probab=96.69  E-value=0.00082  Score=51.02  Aligned_cols=48  Identities=6%  Similarity=-0.034  Sum_probs=29.4

Q ss_pred             CccccCCCCCceeeeeceeeeee---------------eeeEEEEEEEECCEEEEEEEcCCCCCch
Q 030931            1 MLRVKQPYCTSCTLVKFYLLFLL---------------LVRFNVEKVQYKNVIFTVWDVGGQEKLR   51 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~~~---------------t~~~~~~~~~~~~~~~~i~D~~G~~~~~   51 (169)
                      ++++.+|+|||||+|++.+....               |.......+..++   .++||||-..+.
T Consensus       209 ~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        209 IFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             EEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            36778999999999987433221               1122222222233   499999986654

>PRK14974 cell division protein FtsY; Provisional

Probab=96.59  E-value=0.0073  Score=45.67  Aligned_cols=96  Identities=16%  Similarity=0.156  Sum_probs=52.1

Q ss_pred             CEEEEEEEcCCCCCchh-hH---Hhh--ccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931           36 NVIFTVWDVGGQEKLRP-LW---RHY--FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  109 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~-~~---~~~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  109 (169)
                      ++.+.+.||+|...... +.   ...  ....+..++|.|+.....   .......+.+.    -.+--++.||.|....
T Consensus       222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~----~~~~giIlTKlD~~~~  294 (336)
T PRK14974        222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEA----VGIDGVILTKVDADAK  294 (336)
T ss_pred             CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhc----CCCCEEEEeeecCCCC
Confidence            46689999999764221 11   111  225788999999865322   11112222111    1246788999997432


Q ss_pred             CC-HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931          110 MT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  148 (169)
Q Consensus       110 ~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  148 (169)
                      .- .-.+....        +.|+..++  +|++++++...
T Consensus       295 ~G~~ls~~~~~--------~~Pi~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        295 GGAALSIAYVI--------GKPILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             ccHHHHHHHHH--------CcCEEEEe--CCCChhhcccC
Confidence            11 11222222        23566666  79998776543

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.48  E-value=0.055  Score=36.50  Aligned_cols=129  Identities=15%  Similarity=0.118  Sum_probs=66.2

Q ss_pred             ccCCCCCceeeeec----eeeeeeeeeEEEEEEEEC--CEEEEEEEcC-CCCC---------------------ch----
Q 030931            4 VKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYK--NVIFTVWDVG-GQEK---------------------LR----   51 (169)
Q Consensus         4 ~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~--~~~~~i~D~~-G~~~---------------------~~----   51 (169)
                      +-+|+||||++.+.    .+....-.|+....+..+  -.-|.|.|+. |.+.                     +.    
T Consensus        12 G~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~le~i~~   91 (179)
T COG1618          12 GRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGLEEIAI   91 (179)
T ss_pred             CCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHHHHHhH
Confidence            57999999999975    333344445554444442  2446666665 2111                     11    


Q ss_pred             hhHHhhccCCCEEEEEEECCChhhHHH----HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCc
Q 030931           52 PLWRHYFNNTDGLIYVVDSLDRERIGK----AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNR  127 (169)
Q Consensus        52 ~~~~~~~~~~~~ii~v~d~~~~~~~~~----~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  127 (169)
                      ......++.||.+|+  |=  -..++.    +...++++++    .+.|++.+..+.+.. + -.+++....        
T Consensus        92 ~al~rA~~~aDvIII--DE--IGpMElks~~f~~~ve~vl~----~~kpliatlHrrsr~-P-~v~~ik~~~--------  153 (179)
T COG1618          92 PALRRALEEADVIII--DE--IGPMELKSKKFREAVEEVLK----SGKPLIATLHRRSRH-P-LVQRIKKLG--------  153 (179)
T ss_pred             HHHHHHhhcCCEEEE--ec--ccchhhccHHHHHHHHHHhc----CCCcEEEEEecccCC-h-HHHHhhhcC--------
Confidence            112234456777665  43  233332    3344555544    467888888777641 1 112222111        


Q ss_pred             eeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931          128 KWHIQGTCALKGDGLYEGLDWLASTLK  154 (169)
Q Consensus       128 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~  154 (169)
                       .-++.   .+-+|=+.++..+.+.+.
T Consensus       154 -~v~v~---lt~~NR~~i~~~Il~~L~  176 (179)
T COG1618         154 -GVYVF---LTPENRNRILNEILSVLK  176 (179)
T ss_pred             -CEEEE---EccchhhHHHHHHHHHhc
Confidence             11333   555555577777777654

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=96.36  E-value=0.0086  Score=47.15  Aligned_cols=72  Identities=13%  Similarity=0.104  Sum_probs=49.2

Q ss_pred             hccCCCEEEEEEECCChhhHH--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEe
Q 030931           57 YFNNTDGLIYVVDSLDRERIG--KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGT  134 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (169)
                      .+..+|++|.++|+.++-=|.  ++..++.+..     +.+..+++.||.||..+.........+.     +.++++++.
T Consensus       171 VlErSDivvqIVDARnPllfr~~dLe~Yvke~d-----~~K~~~LLvNKaDLl~~~qr~aWa~YF~-----~~ni~~vf~  240 (562)
T KOG1424|consen  171 VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-----PSKANVLLVNKADLLPPEQRVAWAEYFR-----QNNIPVVFF  240 (562)
T ss_pred             HHhhcceEEEEeecCCccccCChhHHHHHhccc-----cccceEEEEehhhcCCHHHHHHHHHHHH-----hcCceEEEE
Confidence            578999999999998765443  3334444432     3577899999999976544444444443     344778888


Q ss_pred             eecc
Q 030931          135 CALK  138 (169)
Q Consensus       135 Sa~~  138 (169)
                      ||..
T Consensus       241 SA~~  244 (562)
T KOG1424|consen  241 SALA  244 (562)
T ss_pred             eccc
Confidence            8886

>COG1161 Predicted GTPases [General function prediction only]

Probab=96.32  E-value=0.0012  Score=49.59  Aligned_cols=45  Identities=9%  Similarity=-0.150  Sum_probs=28.3

Q ss_pred             CccccCCCCCceeeeeceeeee--------eeeeEEEEEEEECCEEEEEEEcCCCC
Q 030931            1 MLRVKQPYCTSCTLVKFYLLFL--------LLVRFNVEKVQYKNVIFTVWDVGGQE   48 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~~--------~t~~~~~~~~~~~~~~~~i~D~~G~~   48 (169)
                      ++.+-+.+|||||+|++.....        .|.+.....++   ..+.++||||.-
T Consensus       136 ~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii  188 (322)
T COG1161         136 GVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD---DGIYLLDTPGII  188 (322)
T ss_pred             EEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC---CCeEEecCCCcC
Confidence            3567899999999998733322        22222222222   238999999953

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=96.22  E-value=0.011  Score=44.99  Aligned_cols=30  Identities=20%  Similarity=0.123  Sum_probs=20.7

Q ss_pred             CceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          126 NRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       126 ~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      .+-+++|.+|-.+|.|+. +++.....+..+
T Consensus       330 er~CPIFQvSNVtG~NL~-LLkmFLNlls~R  359 (641)
T KOG0463|consen  330 ERVCPIFQVSNVTGTNLP-LLKMFLNLLSLR  359 (641)
T ss_pred             ccccceEEeccccCCChH-HHHHHHhhcCcc
Confidence            455789999999999964 445555544443

>PRK12289 GTPase RsgA; Reviewed

Probab=96.19  E-value=0.0017  Score=49.43  Aligned_cols=18  Identities=6%  Similarity=0.004  Sum_probs=15.4

Q ss_pred             CccccCCCCCceeeeece
Q 030931            1 MLRVKQPYCTSCTLVKFY   18 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~   18 (169)
                      ++.+.+|+|||||+|.+.
T Consensus       176 v~iG~SgVGKSSLIN~L~  193 (352)
T PRK12289        176 VVAGPSGVGKSSLINRLI  193 (352)
T ss_pred             EEEeCCCCCHHHHHHHHc
Confidence            467799999999999874

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=96.18  E-value=0.13  Score=41.48  Aligned_cols=101  Identities=11%  Similarity=0.135  Sum_probs=62.0

Q ss_pred             CEEEEEEEcCCC-------------CCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030931           36 NVIFTVWDVGGQ-------------EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN  102 (169)
Q Consensus        36 ~~~~~i~D~~G~-------------~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~n  102 (169)
                      --+..+.|.||.             +....+...|..+.++||+|+-=   .+.+.-+....++.......+...|+|.+
T Consensus       411 LqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD---GSVDAERSnVTDLVsq~DP~GrRTIfVLT  487 (980)
T KOG0447|consen  411 LQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD---GSVDAERSIVTDLVSQMDPHGRRTIFVLT  487 (980)
T ss_pred             cceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc---CCcchhhhhHHHHHHhcCCCCCeeEEEEe
Confidence            356778899983             22445677889999999999832   12222222233444444556788999999


Q ss_pred             CCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccC
Q 030931          103 KQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKG  139 (169)
Q Consensus       103 K~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  139 (169)
                      |.|+.+.  .++..+.+.+.-.....+...||-+-.-.|
T Consensus       488 KVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrG  526 (980)
T KOG0447|consen  488 KVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG  526 (980)
T ss_pred             ecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCC
Confidence            9999653  356666666654433444444666544434

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=96.15  E-value=0.002  Score=49.29  Aligned_cols=48  Identities=8%  Similarity=0.054  Sum_probs=28.0

Q ss_pred             CccccCCCCCceeeeeceeee-----eeeee------EEEEEEEECCEEEEEEEcCCCCC
Q 030931            1 MLRVKQPYCTSCTLVKFYLLF-----LLLVR------FNVEKVQYKNVIFTVWDVGGQEK   49 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~-----~~t~~------~~~~~~~~~~~~~~i~D~~G~~~   49 (169)
                      ++.+.+++|||||+|++....     .++.+      .....+..+ -.+.++||||-..
T Consensus       158 ~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~-~~~~l~DtPG~~~  216 (360)
T TIGR03597       158 YVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD-DGHSLYDTPGIIN  216 (360)
T ss_pred             EEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC-CCCEEEECCCCCC
Confidence            356799999999999763211     11222      112222321 2357999999654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=96.10  E-value=0.0046  Score=48.75  Aligned_cols=67  Identities=18%  Similarity=0.210  Sum_probs=48.4

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM  106 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  106 (169)
                      .+.-++++|.|||-.|.+..-..++-.|+.+.|+|..+.--... ..-+.+.+.    ..+..+++.||+|.
T Consensus        96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA~~----ERIkPvlv~NK~DR  162 (842)
T KOG0469|consen   96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQAIA----ERIKPVLVMNKMDR  162 (842)
T ss_pred             cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHHHH----hhccceEEeehhhH
Confidence            46889999999999999999999999999999999865322211 112223322    23456778999995

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=96.03  E-value=0.057  Score=36.86  Aligned_cols=67  Identities=10%  Similarity=0.078  Sum_probs=47.2

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      +.+.+.+.|||+...  ......+..+|.+++++..+. .+......+++.+.+    .+.|+.+|+||+|...
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~  157 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRH----FGIPVGVVINKYDLND  157 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCc
Confidence            567899999997643  234456788999999998853 455555555554422    2467899999999753

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=96.01  E-value=0.0071  Score=45.47  Aligned_cols=66  Identities=20%  Similarity=0.250  Sum_probs=35.3

Q ss_pred             EEEEEEEcCCCCCchhhHHhhcc--------CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           37 VIFTVWDVGGQEKLRPLWRHYFN--------NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        37 ~~~~i~D~~G~~~~~~~~~~~~~--------~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      ....+.++.|...-..+...++.        ..+++|.|+|+.+..............+..      -=+++.||+|+.+
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence            34566777776544333333221        248899999986533221111122222221      2467899999865

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=95.96  E-value=0.0029  Score=45.74  Aligned_cols=46  Identities=7%  Similarity=-0.044  Sum_probs=28.2

Q ss_pred             CccccCCCCCceeeeeceeeee---------------eeeeEEEEEEEECCEEEEEEEcCCCCCc
Q 030931            1 MLRVKQPYCTSCTLVKFYLLFL---------------LLVRFNVEKVQYKNVIFTVWDVGGQEKL   50 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~~---------------~t~~~~~~~~~~~~~~~~i~D~~G~~~~   50 (169)
                      ++.+.+|+|||||+|++.+...               +|.......+  .+  ..++||||-..+
T Consensus       124 ~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~  184 (245)
T TIGR00157       124 VFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF  184 (245)
T ss_pred             EEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence            3567899999999998733211               1222222223  22  379999997543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK13796 GTPase YqeH; Provisional

Probab=95.94  E-value=0.0026  Score=48.67  Aligned_cols=17  Identities=6%  Similarity=-0.097  Sum_probs=14.8

Q ss_pred             ccccCCCCCceeeeece
Q 030931            2 LRVKQPYCTSCTLVKFY   18 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~   18 (169)
                      +.+.+++|||||+|++.
T Consensus       165 vvG~~NvGKSTLiN~L~  181 (365)
T PRK13796        165 VVGVTNVGKSTLINRII  181 (365)
T ss_pred             EEcCCCCcHHHHHHHHH
Confidence            56789999999999873

>cd01854 YjeQ_engC YjeQ/EngC

Probab=95.94  E-value=0.0019  Score=47.85  Aligned_cols=49  Identities=12%  Similarity=-0.054  Sum_probs=28.7

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee-EE------------EEEEEECCEEEEEEEcCCCCCch
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR-FN------------VEKVQYKNVIFTVWDVGGQEKLR   51 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~-~~------------~~~~~~~~~~~~i~D~~G~~~~~   51 (169)
                      +++..|+|||||+|.+.....++.| +.            ...+.... ...++||||...+.
T Consensus       166 ~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~~  227 (287)
T cd01854         166 LVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREFG  227 (287)
T ss_pred             EECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCccC
Confidence            5678999999999977443332222 10            11122211 23589999986543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=95.92  E-value=0.039  Score=42.86  Aligned_cols=71  Identities=14%  Similarity=0.158  Sum_probs=38.5

Q ss_pred             CCEEEEEEECC----ChhhHHHHHH-HHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEee
Q 030931           61 TDGLIYVVDSL----DRERIGKAKQ-EFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTC  135 (169)
Q Consensus        61 ~~~ii~v~d~~----~~~~~~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  135 (169)
                      .=|+++.-|.+    .++.+....+ -+.++..    -++|.+++.|-.+-.. ....++...+.    .+++.+.+.++
T Consensus       146 TIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~----igKPFvillNs~~P~s-~et~~L~~eL~----ekY~vpVlpvn  216 (492)
T PF09547_consen  146 TIGIVVTTDGSITDIPRENYVEAEERVIEELKE----IGKPFVILLNSTKPYS-EETQELAEELE----EKYDVPVLPVN  216 (492)
T ss_pred             ceeEEEecCCCccCCChHHHHHHHHHHHHHHHH----hCCCEEEEEeCCCCCC-HHHHHHHHHHH----HHhCCcEEEee
Confidence            34555555654    2344443332 3333322    3789999999987432 22233333332    45667788877


Q ss_pred             eccCC
Q 030931          136 ALKGD  140 (169)
Q Consensus       136 a~~~~  140 (169)
                      +..-.
T Consensus       217 c~~l~  221 (492)
T PF09547_consen  217 CEQLR  221 (492)
T ss_pred             hHHcC
Confidence            76443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=95.92  E-value=0.045  Score=42.12  Aligned_cols=92  Identities=13%  Similarity=0.070  Sum_probs=51.2

Q ss_pred             hhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEee
Q 030931           56 HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTC  135 (169)
Q Consensus        56 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  135 (169)
                      -.+..+|++|-|.|+.|+-  ..-...++.+++.. .+...+++|+||+||...--.......+...    +..--|-.|
T Consensus       209 KViDSSDVvvqVlDARDPm--GTrc~~ve~ylkke-~phKHli~vLNKvDLVPtwvt~~Wv~~lSke----yPTiAfHAs  281 (572)
T KOG2423|consen  209 KVIDSSDVVVQVLDARDPM--GTRCKHVEEYLKKE-KPHKHLIYVLNKVDLVPTWVTAKWVRHLSKE----YPTIAFHAS  281 (572)
T ss_pred             HhhcccceeEEeeeccCCc--ccccHHHHHHHhhc-CCcceeEEEeeccccccHHHHHHHHHHHhhh----Ccceeeehh
Confidence            3456899999999997753  22223344555432 3678999999999996532223333333321    111235556


Q ss_pred             eccCCCHHHHHHHHHHHHHh
Q 030931          136 ALKGDGLYEGLDWLASTLKE  155 (169)
Q Consensus       136 a~~~~gi~~~~~~l~~~~~~  155 (169)
                      -.+..|=..++ .+.+++.+
T Consensus       282 i~nsfGKgalI-~llRQf~k  300 (572)
T KOG2423|consen  282 INNSFGKGALI-QLLRQFAK  300 (572)
T ss_pred             hcCccchhHHH-HHHHHHHh
Confidence            55556633333 33443333

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=95.82  E-value=0.022  Score=40.67  Aligned_cols=102  Identities=12%  Similarity=0.052  Sum_probs=60.8

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh--hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR--ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM  113 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~  113 (169)
                      ++.+-+.|+.|....  .....+..+|.+|+=.-.+..  ..-.....|+.+..+ ...+++|.-++.|+++........
T Consensus        83 ~~d~VlvDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~-~~~~~ip~~Vl~Tr~~~~~~~~~~  159 (231)
T PF07015_consen   83 GFDFVLVDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEK-AERRDIPAAVLFTRVPAARLTRAQ  159 (231)
T ss_pred             CCCEEEEeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHH-hhCCCCCeeEEEecCCcchhhHHH
Confidence            467899999987532  345567789999986655422  222233345555543 223579999999999743211111


Q ss_pred             HH-HhhhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931          114 EV-CEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus       114 ~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                      .. .+.+.       .+|++.+.-.......++|.
T Consensus       160 ~~~~e~~~-------~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  160 RIISEQLE-------SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHHHHHHh-------cCCccccccccHHHHHHHHH
Confidence            12 22221       25678888777776666665

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=95.68  E-value=0.00084  Score=45.23  Aligned_cols=19  Identities=11%  Similarity=-0.031  Sum_probs=15.5

Q ss_pred             CccccCCCCCceeeeecee
Q 030931            1 MLRVKQPYCTSCTLVKFYL   19 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~   19 (169)
                      +|.+..|+|||||+|.+.+
T Consensus        39 vl~G~SGvGKSSLiN~L~~   57 (161)
T PF03193_consen   39 VLLGQSGVGKSSLINALLP   57 (161)
T ss_dssp             EEECSTTSSHHHHHHHHHT
T ss_pred             EEECCCCCCHHHHHHHHHh
Confidence            3567899999999998743

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=95.41  E-value=0.15  Score=38.84  Aligned_cols=86  Identities=16%  Similarity=0.203  Sum_probs=64.5

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME  114 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~  114 (169)
                      +.+.+.++|.| + ....-...++..+|-+++|++. +-.+....+++++.+.+ ....+.+..+++||.+.....+..+
T Consensus       216 ~~~~~vV~Dlp-~-~~~~~t~~vL~~Sd~iviv~e~-sl~slR~ak~lld~l~~-~r~~~~~p~lv~n~~~~~~~~~~~d  291 (366)
T COG4963         216 GSFDFVVVDLP-N-IWTDWTRQVLSGSDEIVIVAEP-SLASLRNAKELLDELKR-LRPNDPKPILVLNRVGVPKRPEPSD  291 (366)
T ss_pred             ccCCeEEEcCC-C-ccchHHHHHHhcCCeEEEEecc-cHHHHHHHHHHHHHHHH-hCCCCCCceEEeeecCCCCCCCHHH
Confidence            47889999999 3 2344556789999999999987 44566677777777644 3446788999999999877666777


Q ss_pred             HHhhhCCCCC
Q 030931          115 VCEGLGLFDL  124 (169)
Q Consensus       115 ~~~~~~~~~~  124 (169)
                      +...+++...
T Consensus       292 l~~~~~i~~~  301 (366)
T COG4963         292 LEEILGIESL  301 (366)
T ss_pred             HHHHhCCchh
Confidence            8887776644

>COG1162 Predicted GTPases [General function prediction only]

Probab=95.31  E-value=0.0078  Score=44.50  Aligned_cols=18  Identities=11%  Similarity=-0.073  Sum_probs=14.9

Q ss_pred             ccccCCCCCceeeeecee
Q 030931            2 LRVKQPYCTSCTLVKFYL   19 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~   19 (169)
                      +.+-.|+|||||+|++.+
T Consensus       169 l~GqSGVGKSSLiN~L~p  186 (301)
T COG1162         169 LLGQSGVGKSTLINALLP  186 (301)
T ss_pred             EECCCCCcHHHHHHhhCc
Confidence            456789999999998844

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=95.28  E-value=0.062  Score=43.30  Aligned_cols=128  Identities=10%  Similarity=-0.064  Sum_probs=72.7

Q ss_pred             cccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHH
Q 030931            3 RVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK   78 (169)
Q Consensus         3 ~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~   78 (169)
                      .+-+|.|||||+..+    +......+.=.+..+..+..++.+.++|..  ...+ -...+=||.+++.+|..-.-.++.
T Consensus        75 vGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~m-iDvaKIaDLVlLlIdgnfGfEMET  151 (1077)
T COG5192          75 VGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSD--LHQM-IDVAKIADLVLLLIDGNFGFEMET  151 (1077)
T ss_pred             ecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHH--HHHH-HhHHHhhheeEEEeccccCceehH
Confidence            457899999999854    333222222223445567889999999932  2332 234566899999999853322221


Q ss_pred             HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCCC--CCceeEEEEeeec
Q 030931           79 AKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDL--KNRKWHIQGTCAL  137 (169)
Q Consensus        79 ~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~  137 (169)
                       ..++. ++....  -..++-|+++.|+... .......+.+.-..+  -..+...|..|..
T Consensus       152 -mEFLn-il~~HG--mPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV  209 (1077)
T COG5192         152 -MEFLN-ILISHG--MPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGV  209 (1077)
T ss_pred             -HHHHH-HHhhcC--CCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence             22222 322221  2346778999999653 334555554443333  1345567777754

>PRK00098 GTPase RsgA; Reviewed

Probab=95.25  E-value=0.007  Score=45.08  Aligned_cols=18  Identities=17%  Similarity=-0.062  Sum_probs=15.0

Q ss_pred             ccccCCCCCceeeeecee
Q 030931            2 LRVKQPYCTSCTLVKFYL   19 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~   19 (169)
                      +.+.+|+|||||+|.+.+
T Consensus       169 ~~G~sgvGKStlin~l~~  186 (298)
T PRK00098        169 LAGQSGVGKSTLLNALAP  186 (298)
T ss_pred             EECCCCCCHHHHHHHHhC
Confidence            567899999999998743

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.74  E-value=0.048  Score=43.77  Aligned_cols=66  Identities=9%  Similarity=0.086  Sum_probs=36.5

Q ss_pred             CCEEEEEEEcCCCCCchhhHHh---hcc--CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRH---YFN--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~---~~~--~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      ..+.+.|+||+|..........   .+.  .....++|++.+.  +.......++.+..     ..+.-+++||.|..
T Consensus       427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt  497 (559)
T PRK12727        427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDET  497 (559)
T ss_pred             ccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCc
Confidence            3577899999996533221110   011  1235667777653  33344444444422     24677999999974

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=94.65  E-value=0.097  Score=40.27  Aligned_cols=73  Identities=10%  Similarity=0.129  Sum_probs=38.1

Q ss_pred             CCEEEEEEEcCCCCCchhhHHh---hc---cCCCEEEEEEECCC-hhhHHHHHHHHHHHhcCCCCC-CCeEEEEEeCCCC
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRH---YF---NNTDGLIYVVDSLD-RERIGKAKQEFQAIIKDPFML-NSVILVFANKQDM  106 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~---~~---~~~~~ii~v~d~~~-~~~~~~~~~~~~~~~~~~~~~-~~piivv~nK~Dl  106 (169)
                      .+..+.++||+|..........   .+   ....-.++|++.+. .+....+..-+.......... ..+-=++.+|.|-
T Consensus       214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE  293 (374)
T PRK14722        214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE  293 (374)
T ss_pred             cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecccc
Confidence            3567899999997643322211   12   23345688888865 344444433333332111000 0134577899995


Q ss_pred             C
Q 030931          107 K  107 (169)
Q Consensus       107 ~  107 (169)
                      .
T Consensus       294 t  294 (374)
T PRK14722        294 A  294 (374)
T ss_pred             C
Confidence            4

>KOG2484 consensus GTPase [General function prediction only]

Probab=94.43  E-value=0.09  Score=40.40  Aligned_cols=65  Identities=15%  Similarity=0.099  Sum_probs=41.8

Q ss_pred             chhhHHhhccCCCEEEEEEECCChhhH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030931           50 LRPLWRHYFNNTDGLIYVVDSLDRERI--GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL  119 (169)
Q Consensus        50 ~~~~~~~~~~~~~~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~  119 (169)
                      |.......+..+|++|.|.|+.|+.+=  .++..|+...     ..+...|+|+||+|+......++....+
T Consensus       136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~-----~gnKkLILVLNK~DLVPrEv~e~Wl~YL  202 (435)
T KOG2484|consen  136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA-----HGNKKLILVLNKIDLVPREVVEKWLVYL  202 (435)
T ss_pred             HHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc-----cCCceEEEEeehhccCCHHHHHHHHHHH
Confidence            344455567789999999999887542  2333333221     1358899999999997554444444444

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=94.31  E-value=0.089  Score=33.85  Aligned_cols=20  Identities=5%  Similarity=-0.267  Sum_probs=15.7

Q ss_pred             ccccCCCCCceeeeeceeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLF   21 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~   21 (169)
                      +.+.+|+|||+|++.+....
T Consensus        24 i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          24 LYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             EECCCCCCHHHHHHHHHHHh
Confidence            56799999999999874433

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK13695 putative NTPase; Provisional

Probab=94.26  E-value=0.36  Score=32.78  Aligned_cols=16  Identities=6%  Similarity=0.032  Sum_probs=13.4

Q ss_pred             ccccCCCCCceeeeec
Q 030931            2 LRVKQPYCTSCTLVKF   17 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f   17 (169)
                      |.+.+|+|||||+..+
T Consensus         5 ltG~~G~GKTTll~~i   20 (174)
T PRK13695          5 ITGPPGVGKTTLVLKI   20 (174)
T ss_pred             EECCCCCCHHHHHHHH
Confidence            4568999999999974

>PF05729 NACHT: NACHT domain

Probab=94.03  E-value=0.063  Score=35.71  Aligned_cols=47  Identities=6%  Similarity=0.225  Sum_probs=27.7

Q ss_pred             HhhccCCCEEEEEEECCChhhH-------HHHHHHHHHHhcCCCCCCCeEEEEE
Q 030931           55 RHYFNNTDGLIYVVDSLDRERI-------GKAKQEFQAIIKDPFMLNSVILVFA  101 (169)
Q Consensus        55 ~~~~~~~~~ii~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~piivv~  101 (169)
                      ........-+++++|.-|.-.-       .....++..++.....++..+++..
T Consensus        74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~  127 (166)
T PF05729_consen   74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITS  127 (166)
T ss_pred             HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEE
Confidence            3455677888899998654322       1233456566554334567766665

>PRK10867 signal recognition particle protein; Provisional

Probab=93.98  E-value=0.14  Score=40.22  Aligned_cols=64  Identities=19%  Similarity=0.157  Sum_probs=35.4

Q ss_pred             CEEEEEEEcCCCCCchhh-HH---hh--ccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPL-WR---HY--FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM  106 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~-~~---~~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  106 (169)
                      ++.+.|.||+|....... ..   .+  .-..+.+++|+|....   .+.......+.+..    ...-++.||.|-
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~----~i~giIlTKlD~  252 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL----GLTGVILTKLDG  252 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC----CCCEEEEeCccC
Confidence            467999999996543221 11   11  1256788999998543   22223333332211    124566799995

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.85  E-value=0.067  Score=38.90  Aligned_cols=73  Identities=16%  Similarity=0.147  Sum_probs=41.8

Q ss_pred             ccccCCCCCceeeeec-eeee---eeeeeEEEEE---EEEC--CEEEEEEEcCCCCCchhhHH-----hhccCCCEEEEE
Q 030931            2 LRVKQPYCTSCTLVKF-YLLF---LLLVRFNVEK---VQYK--NVIFTVWDVGGQEKLRPLWR-----HYFNNTDGLIYV   67 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-~~~~---~~t~~~~~~~---~~~~--~~~~~i~D~~G~~~~~~~~~-----~~~~~~~~ii~v   67 (169)
                      +++++.=|||++++++ ....   .||....+..   ...+  +-..++|+.+|......+..     ..++ .-.+|++
T Consensus        48 I~~~Gn~~~tt~I~~~FdR~e~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~-~~slIL~  126 (363)
T KOG3929|consen   48 IGSKGNGGKTTIILRCFDRDEPPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR-TFSLILV  126 (363)
T ss_pred             EEEecCCceeEeehhhcCcccCCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh-hhhheee
Confidence            4556777889999976 3333   3344333221   1111  23478999998765444322     1222 3457888


Q ss_pred             EECCChhh
Q 030931           68 VDSLDRER   75 (169)
Q Consensus        68 ~d~~~~~~   75 (169)
                      .|+++++.
T Consensus       127 LDls~p~~  134 (363)
T KOG3929|consen  127 LDLSKPND  134 (363)
T ss_pred             eecCChHH
Confidence            99998764

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=93.32  E-value=0.17  Score=37.76  Aligned_cols=106  Identities=14%  Similarity=0.003  Sum_probs=60.0

Q ss_pred             EEEEcCCCCCc-hhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhh
Q 030931           40 TVWDVGGQEKL-RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEG  118 (169)
Q Consensus        40 ~i~D~~G~~~~-~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~  118 (169)
                      ..-+.|||..- ......-+...|.+|=|=|+.-+-  ..-...+++++     +.+|-++|.||+||.++.....+.+.
T Consensus        25 ~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPL--ssrn~~~~~~~-----~~k~riiVlNK~DLad~~~~k~~iq~   97 (335)
T KOG2485|consen   25 PRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPL--SSRNELFQDFL-----PPKPRIIVLNKMDLADPKEQKKIIQY   97 (335)
T ss_pred             ccccCchHHHHHHHHHHhhcccccEEEEeeccccCC--ccccHHHHHhc-----CCCceEEEEecccccCchhhhHHHHH
Confidence            34456776421 112334567899999998884332  22223344443     37899999999999876444445544


Q ss_pred             hCCCCCCCceeEEEEeeeccCCC--HHHHHHHHHHHHHhh
Q 030931          119 LGLFDLKNRKWHIQGTCALKGDG--LYEGLDWLASTLKEM  156 (169)
Q Consensus       119 ~~~~~~~~~~~~~~~~Sa~~~~g--i~~~~~~l~~~~~~~  156 (169)
                      +...    ....|+..++....+  +..++..+.....+.
T Consensus        98 ~~~~----~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l  133 (335)
T KOG2485|consen   98 LEWQ----NLESYIKLDCNKDCNKQVSPLLKILTILSEEL  133 (335)
T ss_pred             HHhh----cccchhhhhhhhhhhhccccHHHHHHHHHHHH
Confidence            4322    222355555444443  666666655544443

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=93.23  E-value=1.5  Score=32.36  Aligned_cols=95  Identities=13%  Similarity=0.117  Sum_probs=52.8

Q ss_pred             CCEEEEEEEcCCCCCchhhHH-------hhc-----cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030931           35 KNVIFTVWDVGGQEKLRPLWR-------HYF-----NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN  102 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~-------~~~-----~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~n  102 (169)
                      .++.+.+.||||.........       ...     ..++..++|+|.+..  .+... ....+.+..    .+--++.|
T Consensus       153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~----~~~g~IlT  225 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV----GLTGIILT  225 (272)
T ss_pred             CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC----CCCEEEEE
Confidence            457899999999765332211       111     238999999999642  22222 223332211    25688899


Q ss_pred             CCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHH
Q 030931          103 KQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus       103 K~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      |.|-....- .-.+....        +.|+.+++  +|++++++-
T Consensus       226 KlDe~~~~G~~l~~~~~~--------~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       226 KLDGTAKGGIILSIAYEL--------KLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             ccCCCCCccHHHHHHHHH--------CcCEEEEe--CCCChHhCc
Confidence            999743211 12222222        23566666  788876653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=93.20  E-value=0.35  Score=39.80  Aligned_cols=65  Identities=20%  Similarity=0.308  Sum_probs=41.3

Q ss_pred             EEEEEcCCCCC---chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           39 FTVWDVGGQEK---LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        39 ~~i~D~~G~~~---~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      +.+.|.||..-   ...-...++..+|++|+|..+.+..+... .+++...-+    ..+-++++-||.|...
T Consensus       208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~----~KpniFIlnnkwDasa  275 (749)
T KOG0448|consen  208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE----EKPNIFILNNKWDASA  275 (749)
T ss_pred             ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc----cCCcEEEEechhhhhc
Confidence            56678888553   23334567789999999998866544333 334444422    2556777788889753

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=93.19  E-value=0.63  Score=34.17  Aligned_cols=48  Identities=17%  Similarity=0.237  Sum_probs=29.7

Q ss_pred             CCCEEEEEEECCCh-----h--hHHH----HHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           60 NTDGLIYVVDSLDR-----E--RIGK----AKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        60 ~~~~ii~v~d~~~~-----~--~~~~----~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      ..+|+|+++|+.+.     .  .+..    ++.-+.++.+ ...-..||.+++||+|+..
T Consensus        25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~-~lg~~~PVYvv~Tk~D~l~   83 (266)
T PF14331_consen   25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQR-TLGVRLPVYVVFTKCDLLP   83 (266)
T ss_pred             CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHH-HhCCCCCeEeeeECCCccc
Confidence            56999999998632     1  1222    2223333322 2224799999999999864

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=92.89  E-value=0.52  Score=33.90  Aligned_cols=45  Identities=24%  Similarity=0.211  Sum_probs=29.6

Q ss_pred             hccCCCEEEEEEECCChh--hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           57 YFNNTDGLIYVVDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      ..+++|.+|+|+|.+-..  +-+.+.++..++      .=.++.+|.||.|-.
T Consensus       152 ~~~~vD~vivVvDpS~~sl~taeri~~L~~el------g~k~i~~V~NKv~e~  198 (255)
T COG3640         152 TIEGVDLVIVVVDPSYKSLRTAERIKELAEEL------GIKRIFVVLNKVDEE  198 (255)
T ss_pred             cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHh------CCceEEEEEeeccch
Confidence            456899999999986431  222333333333      137999999999954

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=92.72  E-value=1.9  Score=28.99  Aligned_cols=65  Identities=11%  Similarity=-0.041  Sum_probs=42.9

Q ss_pred             EEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           38 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        38 ~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      .+.|+|+|+....  .....+..+|.+|++++.+. .++.....+++.+.. .  ......++.|+.+...
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~-~--~~~~~~iv~N~~~~~~  128 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEA-L--GIKVVGVIVNRVRPDM  128 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHH-c--CCceEEEEEeCCcccc
Confidence            6899999986433  34455688999999998743 445555554444422 1  2346778999998653

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=92.54  E-value=0.32  Score=38.17  Aligned_cols=65  Identities=9%  Similarity=0.102  Sum_probs=35.6

Q ss_pred             CEEEEEEEcCCCCCchh----hHHhhcc---CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           36 NVIFTVWDVGGQEKLRP----LWRHYFN---NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~----~~~~~~~---~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      .+.+.++||+|......    ....+++   ...-..+|++.+-.  ...+.+.+..+-. .   + +--++.||.|-.
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~-~---~-~~~vI~TKlDet  370 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR-L---P-LDGLIFTKLDET  370 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC-C---C-CCEEEEeccccc
Confidence            56789999999754431    1222333   23466778887532  2333333333311 1   1 236889999964

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=92.40  E-value=0.049  Score=37.24  Aligned_cols=58  Identities=9%  Similarity=-0.026  Sum_probs=31.3

Q ss_pred             cccCCCCCceeeeeceeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEE
Q 030931            3 RVKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY   66 (169)
Q Consensus         3 ~~~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~   66 (169)
                      .+..|||||||+.++..... ..+..+..+......+.+ |.+|.+.+    ...-.+|+.+++
T Consensus        12 vG~sgsGKTTLi~~li~~l~-~~g~~vg~Ik~~~~~~~~-d~~g~Ds~----~~r~aGA~~v~~   69 (173)
T PRK10751         12 AAWSGTGKTTLLKKLIPALC-ARGIRPGLIKHTHHDMDV-DKPGKDSY----ELRKAGAAQTLV   69 (173)
T ss_pred             ECCCCChHHHHHHHHHHHHh-hcCCeEEEEEEcCCCccc-CCCCcHHH----HHHHhCCcEEEE
Confidence            45789999999998744332 223334444443333444 67775432    222345555443

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.05  E-value=0.48  Score=36.60  Aligned_cols=40  Identities=23%  Similarity=0.341  Sum_probs=26.5

Q ss_pred             CCEEEEEEEcCCCCCch-hhHHh-----hccCCCEEEEEEECCChh
Q 030931           35 KNVIFTVWDVGGQEKLR-PLWRH-----YFNNTDGLIYVVDSLDRE   74 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~-~~~~~-----~~~~~~~ii~v~d~~~~~   74 (169)
                      +++.+.|.||+|+..-. ++...     -.-..|-+|||.|.+--.
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ  227 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ  227 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH
Confidence            57889999999965322 12111     123579999999997543

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=92.04  E-value=0.035  Score=37.45  Aligned_cols=46  Identities=13%  Similarity=0.106  Sum_probs=29.7

Q ss_pred             ccccCCCCCceeeeeceeeeeeeeeEEEEEEEECCEEEEEEEcCCCCC
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEK   49 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~   49 (169)
                      +.+.+|+|||||+.++.... ...|..+..+......+.+ |.+|.+.
T Consensus         6 i~G~~gsGKTTli~~L~~~l-~~~g~~V~~iK~~~~~~~~-d~~g~Ds   51 (159)
T cd03116           6 FVGYSGSGKTTLLEKLIPAL-SARGLRVAVIKHDHHDFDI-DTPGKDS   51 (159)
T ss_pred             EECCCCCCHHHHHHHHHHHH-HHcCCcEEEEEecCCcccc-cCccchH
Confidence            34578999999999885443 3345555556555555554 7777653

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=91.86  E-value=0.17  Score=39.54  Aligned_cols=65  Identities=11%  Similarity=0.123  Sum_probs=34.9

Q ss_pred             CEEEEEEEcCCCCCch-hh---HHhhcc-----CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931           36 NVIFTVWDVGGQEKLR-PL---WRHYFN-----NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM  106 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~-~~---~~~~~~-----~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  106 (169)
                      ++.+.++||+|..... ..   +..+++     ...-.++|+|++-..  +...+....+ +.    --+-=++.+|.|-
T Consensus       299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~----~~~~glIlTKLDE  371 (432)
T PRK12724        299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ES----LNYRRILLTKLDE  371 (432)
T ss_pred             CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cC----CCCCEEEEEcccC
Confidence            5678999999975321 11   122222     234678899986532  2222223333 11    1245577899995


Q ss_pred             C
Q 030931          107 K  107 (169)
Q Consensus       107 ~  107 (169)
                      .
T Consensus       372 t  372 (432)
T PRK12724        372 A  372 (432)
T ss_pred             C
Confidence            3

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=91.23  E-value=0.1  Score=37.46  Aligned_cols=25  Identities=4%  Similarity=-0.218  Sum_probs=22.1

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++-.|+||||++|-++..+.|+-|
T Consensus        35 LIGPNGAGKTTlfNlitG~~~P~~G   59 (250)
T COG0411          35 LIGPNGAGKTTLFNLITGFYKPSSG   59 (250)
T ss_pred             EECCCCCCceeeeeeecccccCCCc
Confidence            4567899999999999999999988

>cd03114 ArgK-like The function of this protein family is unkown

Probab=91.21  E-value=1  Score=29.90  Aligned_cols=58  Identities=17%  Similarity=0.125  Sum_probs=36.3

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD  105 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~D  105 (169)
                      ++.+-+.||+|...   ....++..||-+++|...+-.+.+.-++   ..++      ..-=++++||+|
T Consensus        91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~------~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIK---AGIM------EIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhh---hhHh------hhcCEEEEeCCC
Confidence            57789999998642   2234788899999998765322222211   1122      223578899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=91.20  E-value=0.028  Score=36.45  Aligned_cols=25  Identities=12%  Similarity=-0.193  Sum_probs=20.2

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++.+.....|+.|
T Consensus        16 i~G~nGsGKStLl~~l~g~~~~~~G   40 (137)
T PF00005_consen   16 IVGPNGSGKSTLLKALAGLLPPDSG   40 (137)
T ss_dssp             EEESTTSSHHHHHHHHTTSSHESEE
T ss_pred             EEccCCCccccceeeeccccccccc
Confidence            4678999999999988777767555

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03112 CobW_like The function of this protein family is unkown

Probab=91.15  E-value=0.72  Score=30.93  Aligned_cols=65  Identities=22%  Similarity=0.153  Sum_probs=35.8

Q ss_pred             CEEEEEEEcCCCCCchhhHHh--------hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPLWRH--------YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM  106 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~--------~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  106 (169)
                      .....+.|++|-..-......        ..-.++++++++|..+..........+...+...      =+++.||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence            345678899997543332221        2235789999999865433221122222322221      3568999985

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=91.01  E-value=0.11  Score=35.45  Aligned_cols=43  Identities=19%  Similarity=0.110  Sum_probs=26.2

Q ss_pred             ccccCCCCCceeeeecee----eeeeeeeEEEEEEEEC--CEEEEEEEc
Q 030931            2 LRVKQPYCTSCTLVKFYL----LFLLLVRFNVEKVQYK--NVIFTVWDV   44 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~----~~~~t~~~~~~~~~~~--~~~~~i~D~   44 (169)
                      |-+.+|+|||||++++.+    ...+.-|+....+..+  .+-|.+.|.
T Consensus         4 iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l   52 (168)
T PF03266_consen    4 ITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDL   52 (168)
T ss_dssp             EES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET
T ss_pred             EECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEEC
Confidence            446899999999997632    2346666665554442  233555555

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=90.73  E-value=0.13  Score=38.32  Aligned_cols=95  Identities=7%  Similarity=0.025  Sum_probs=52.4

Q ss_pred             ccccCCCCCceeeeeceeeeeeeeeEEEEEEEECCEEEEEEEcCCCCC------------------------chhhHHhh
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEK------------------------LRPLWRHY   57 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~------------------------~~~~~~~~   57 (169)
                      |.+..+.|||+++++|...+.+..+-.     ...+.+...++|....                        ........
T Consensus        66 ivG~snnGKT~Ii~rF~~~hp~~~d~~-----~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l  140 (302)
T PF05621_consen   66 IVGDSNNGKTMIIERFRRLHPPQSDED-----AERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL  140 (302)
T ss_pred             EecCCCCcHHHHHHHHHHHCCCCCCCC-----CccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence            456889999999999966555443311     1123444444443111                        12223356


Q ss_pred             ccCCCEEEEEEECCCh---hhHHH---HHHHHHHHhcCCCCCCCeEEEEEeCC
Q 030931           58 FNNTDGLIYVVDSLDR---ERIGK---AKQEFQAIIKDPFMLNSVILVFANKQ  104 (169)
Q Consensus        58 ~~~~~~ii~v~d~~~~---~~~~~---~~~~~~~~~~~~~~~~~piivv~nK~  104 (169)
                      ++....=++++|=-+.   .+...   +..+++.+   .+.-++|++.+|++-
T Consensus       141 lr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L---~NeL~ipiV~vGt~~  190 (302)
T PF05621_consen  141 LRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFL---GNELQIPIVGVGTRE  190 (302)
T ss_pred             HHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHH---hhccCCCeEEeccHH
Confidence            6777888888875321   12222   22333333   222379999999764

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=90.70  E-value=0.047  Score=30.63  Aligned_cols=16  Identities=13%  Similarity=-0.078  Sum_probs=13.2

Q ss_pred             ccccCCCCCceeeeec
Q 030931            2 LRVKQPYCTSCTLVKF   17 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f   17 (169)
                      |.++.|||||||+..+
T Consensus        28 i~G~nGsGKSTllDAi   43 (62)
T PF13555_consen   28 ITGPNGSGKSTLLDAI   43 (62)
T ss_pred             EECCCCCCHHHHHHHH
Confidence            4568999999999854

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=90.53  E-value=0.11  Score=37.58  Aligned_cols=17  Identities=12%  Similarity=-0.187  Sum_probs=14.2

Q ss_pred             ccccCCCCCceeeeece
Q 030931            2 LRVKQPYCTSCTLVKFY   18 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~   18 (169)
                      +.|-+||||||+..++.
T Consensus         4 l~G~pGSGKST~a~~La   20 (249)
T TIGR03574         4 LTGLPGVGKSTFSKELA   20 (249)
T ss_pred             EEcCCCCCHHHHHHHHH
Confidence            56789999999999763

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=90.46  E-value=0.032  Score=36.44  Aligned_cols=18  Identities=11%  Similarity=-0.093  Sum_probs=15.3

Q ss_pred             CccccCCCCCceeeeece
Q 030931            1 MLRVKQPYCTSCTLVKFY   18 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~   18 (169)
                      ++.+.+||||||+.+++.
T Consensus         3 i~~G~pgsGKSt~a~~l~   20 (143)
T PF13671_consen    3 ILCGPPGSGKSTLAKRLA   20 (143)
T ss_dssp             EEEESTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            356799999999999874

...

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=90.40  E-value=3.8  Score=30.20  Aligned_cols=78  Identities=13%  Similarity=0.121  Sum_probs=47.0

Q ss_pred             EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH
Q 030931           37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVC  116 (169)
Q Consensus        37 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~  116 (169)
                      ..+.|.|+|-.-  .-..-..+.++|.+|+|--.+. ..+.+....++-. ++   -++|..+|.||.++... ..++..
T Consensus       164 ~~~~IIDsaaG~--gCpVi~sl~~aD~ai~VTEPTp-~glhD~kr~~el~-~~---f~ip~~iViNr~~~g~s-~ie~~~  235 (284)
T COG1149         164 ADLLIIDSAAGT--GCPVIASLKGADLAILVTEPTP-FGLHDLKRALELV-EH---FGIPTGIVINRYNLGDS-EIEEYC  235 (284)
T ss_pred             cceeEEecCCCC--CChHHHhhccCCEEEEEecCCc-cchhHHHHHHHHH-HH---hCCceEEEEecCCCCch-HHHHHH
Confidence            367777776321  1223456789999999976653 2233333333222 22   27999999999977654 556666


Q ss_pred             hhhCCC
Q 030931          117 EGLGLF  122 (169)
Q Consensus       117 ~~~~~~  122 (169)
                      +..+..
T Consensus       236 ~e~gi~  241 (284)
T COG1149         236 EEEGIP  241 (284)
T ss_pred             HHcCCC
Confidence            655544

>PHA02518 ParA-like protein; Provisional

Probab=90.26  E-value=2.3  Score=29.58  Aligned_cols=68  Identities=12%  Similarity=-0.046  Sum_probs=41.8

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh--hhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCC
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR--ERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDM  106 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl  106 (169)
                      ..+.+.|+|+||..  .......+..+|.+|++...+..  .....+..++..... . ..+.| ..++.|+.+.
T Consensus        75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~iv~n~~~~  145 (211)
T PHA02518         75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQE-V-TDGLPKFAFIISRAIK  145 (211)
T ss_pred             ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHh-h-CCCCceEEEEEeccCC
Confidence            35789999999874  45566778899999999987532  223333334444321 1 12344 4566777654

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=89.88  E-value=2.4  Score=30.33  Aligned_cols=67  Identities=16%  Similarity=0.089  Sum_probs=44.4

Q ss_pred             EEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           38 IFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        38 ~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      .+.++|+|+.  ........+..||.++++...+ ..++..+...+.++.+.. ....+.-++.|+.|...
T Consensus       116 D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~-~~~~~~~iv~n~~~~~~  182 (246)
T TIGR03371       116 DWVLIDVPRG--PSPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGS-GPRIGPHFLINQFDPAR  182 (246)
T ss_pred             CEEEEECCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcc-cccccceEEeeccCcch
Confidence            6899999985  3445667778999999999874 344555543333443311 12456779999998643

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=89.87  E-value=0.28  Score=37.98  Aligned_cols=65  Identities=14%  Similarity=0.038  Sum_probs=34.7

Q ss_pred             CEEEEEEEcCCCCCchhhH----Hhhcc--CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPLW----RHYFN--NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~----~~~~~--~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      .+.+.+.||+|........    ..+..  ..+.+++|.+.+  ....+....+..+ +    .-.+--++.||.|-.
T Consensus       285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f-~----~l~i~glI~TKLDET  355 (407)
T PRK12726        285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKL-A----EIPIDGFIITKMDET  355 (407)
T ss_pred             CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhc-C----cCCCCEEEEEcccCC
Confidence            4688999999985432221    12222  345666776652  2233333333332 1    122456779999964

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.71  E-value=0.43  Score=34.67  Aligned_cols=48  Identities=13%  Similarity=0.157  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           58 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        58 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      .....++++|||++....+..+..|+...-- .. -+ -++.+|||.|...
T Consensus        76 a~pl~a~vmvfdlse~s~l~alqdwl~htdi-ns-fd-illcignkvdrvp  123 (418)
T KOG4273|consen   76 AEPLQAFVMVFDLSEKSGLDALQDWLPHTDI-NS-FD-ILLCIGNKVDRVP  123 (418)
T ss_pred             ccceeeEEEEEeccchhhhHHHHhhcccccc-cc-ch-hheeccccccccc
Confidence            3556899999999999889888888764311 10 12 3456799999753

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=89.27  E-value=0.056  Score=38.84  Aligned_cols=26  Identities=8%  Similarity=-0.194  Sum_probs=23.0

Q ss_pred             ccccCCCCCceeeeeceeeeeeeeeE
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVRF   27 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~~   27 (169)
                      |++..|+|||||++=+...+.||.|-
T Consensus        58 iiG~NGaGKSTLlkliaGi~~Pt~G~   83 (249)
T COG1134          58 IIGHNGAGKSTLLKLIAGIYKPTSGK   83 (249)
T ss_pred             EECCCCCcHHHHHHHHhCccCCCCce
Confidence            46789999999999889999999993

>cd01855 YqeH YqeH

Probab=89.25  E-value=0.055  Score=37.37  Aligned_cols=20  Identities=5%  Similarity=-0.157  Sum_probs=16.7

Q ss_pred             CccccCCCCCceeeeeceee
Q 030931            1 MLRVKQPYCTSCTLVKFYLL   20 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~   20 (169)
                      |+.+.+++|||||+|.+...
T Consensus       131 ~~~G~~nvGKStliN~l~~~  150 (190)
T cd01855         131 YVVGATNVGKSTLINALLKK  150 (190)
T ss_pred             EEEcCCCCCHHHHHHHHHHh
Confidence            46789999999999998544

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=88.94  E-value=0.063  Score=37.08  Aligned_cols=25  Identities=16%  Similarity=-0.077  Sum_probs=19.8

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        23 i~G~nGsGKSTLl~~i~G~~~~~~G   47 (190)
T TIGR01166        23 LLGANGAGKSTLLLHLNGLLRPQSG   47 (190)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCce
Confidence            5678999999999977666666665

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=88.77  E-value=0.98  Score=38.14  Aligned_cols=67  Identities=7%  Similarity=0.063  Sum_probs=36.2

Q ss_pred             CEEEEEEEcCCCCCchh-hH---Hhh--ccCCCEEEEEEECCC-hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           36 NVIFTVWDVGGQEKLRP-LW---RHY--FNNTDGLIYVVDSLD-RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~-~~---~~~--~~~~~~ii~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      ++.+.++||+|..-... +.   ...  ....+-.++|.|.+. .+.+.++.+.+.....     --+-=++++|.|-.
T Consensus       263 ~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~-----~~i~glIlTKLDEt  336 (767)
T PRK14723        263 DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAG-----EDVDGCIITKLDEA  336 (767)
T ss_pred             CCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhccc-----CCCCEEEEeccCCC
Confidence            45789999999543221 11   111  123566889999864 3344444333332210     01345779999954

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=88.73  E-value=2.7  Score=25.61  Aligned_cols=43  Identities=14%  Similarity=0.103  Sum_probs=31.2

Q ss_pred             hhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEE
Q 030931           51 RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVF  100 (169)
Q Consensus        51 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv  100 (169)
                      ....+..+..+|++|++.|..+......+++.-.+       .++|++.+
T Consensus        39 ~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk-------~~ip~~~~   81 (97)
T PF10087_consen   39 ASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKK-------YGIPIIYS   81 (97)
T ss_pred             hhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHH-------cCCcEEEE
Confidence            33467778899999999999888766666544333       27788876

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=88.69  E-value=0.061  Score=38.35  Aligned_cols=25  Identities=12%  Similarity=-0.301  Sum_probs=19.0

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      +.+..|||||||++-+..--.||.|
T Consensus        36 I~GpSGSGKSTLLniig~ld~pt~G   60 (226)
T COG1136          36 IVGPSGSGKSTLLNLLGGLDKPTSG   60 (226)
T ss_pred             EECCCCCCHHHHHHHHhcccCCCCc
Confidence            4568999999999977555555665

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=88.48  E-value=0.054  Score=34.46  Aligned_cols=20  Identities=0%  Similarity=-0.212  Sum_probs=16.0

Q ss_pred             ccccCCCCCceeeeeceeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLF   21 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~   21 (169)
                      |-+.+||||||+.+.+....
T Consensus         3 i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    3 ISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEESTTSSHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHH
Confidence            55789999999999875544

...

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=88.44  E-value=0.072  Score=37.59  Aligned_cols=25  Identities=12%  Similarity=-0.302  Sum_probs=19.7

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        35 l~G~nGsGKSTLl~~i~Gl~~~~~G   59 (218)
T cd03255          35 IVGPSGSGKSTLLNILGGLDRPTSG   59 (218)
T ss_pred             EEcCCCCCHHHHHHHHhCCcCCCce
Confidence            5678999999999987666666655

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=88.18  E-value=0.078  Score=37.39  Aligned_cols=25  Identities=12%  Similarity=-0.259  Sum_probs=19.8

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        34 i~G~nGsGKSTLl~~l~Gl~~~~~G   58 (216)
T TIGR00960        34 LVGHSGAGKSTFLKLILGIEKPTRG   58 (216)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCce
Confidence            5678999999999977666666655

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=88.12  E-value=1.1  Score=34.81  Aligned_cols=66  Identities=18%  Similarity=0.164  Sum_probs=37.6

Q ss_pred             CCEEEEEEEcCCCCCchhh----HHhhccC---CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           35 KNVIFTVWDVGGQEKLRPL----WRHYFNN---TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~----~~~~~~~---~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      .++.+.+.||+|......+    ...++..   ..-.++|.|++..  .+.+.+.+..+..     -.+-=++.+|.|-.
T Consensus       253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet  325 (388)
T PRK12723        253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDET  325 (388)
T ss_pred             CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCC
Confidence            4677999999997543221    1122332   2258899998654  2333344444411     12456788999953

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=88.11  E-value=0.073  Score=36.55  Aligned_cols=25  Identities=4%  Similarity=-0.267  Sum_probs=20.2

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        31 i~G~nGsGKSTLl~~l~G~~~~~~G   55 (182)
T cd03215          31 IAGLVGNGQTELAEALFGLRPPASG   55 (182)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCc
Confidence            5678999999999987666666666

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=88.02  E-value=0.079  Score=37.49  Aligned_cols=25  Identities=16%  Similarity=-0.246  Sum_probs=19.6

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        35 i~G~nGsGKSTLl~~l~Gl~~~~~G   59 (220)
T cd03293          35 LVGPSGCGKSTLLRIIAGLERPTSG   59 (220)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCce
Confidence            5678999999999977666556655

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=87.96  E-value=2.9  Score=30.05  Aligned_cols=68  Identities=12%  Similarity=0.090  Sum_probs=44.3

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhc--CCCCCCCeEEEEEeCCC
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIK--DPFMLNSVILVFANKQD  105 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~piivv~nK~D  105 (169)
                      +.+.+.|.|+||...  ......+..||.+|+.+..+ ...+......+..+.+  ....++.|..++.|.++
T Consensus        82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps-~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~  151 (231)
T PRK13849         82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLT-PLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP  151 (231)
T ss_pred             CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCc-HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence            468899999999763  44556778899999888763 3334444333333222  11224678889999986

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=87.95  E-value=0.078  Score=37.19  Aligned_cols=25  Identities=12%  Similarity=-0.105  Sum_probs=19.5

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        31 i~G~nGsGKSTLl~~l~G~~~~~~G   55 (210)
T cd03269          31 LLGPNGAGKTTTIRMILGIILPDSG   55 (210)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCce
Confidence            5678999999999977666556655

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=87.95  E-value=0.072  Score=33.69  Aligned_cols=20  Identities=5%  Similarity=-0.187  Sum_probs=16.4

Q ss_pred             ccccCCCCCceeeeeceeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLF   21 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~   21 (169)
                      |.+.+||||||+.+++.+.+
T Consensus         4 I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    4 ISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEESTTSSHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHH
Confidence            45789999999999886654

...

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=87.94  E-value=0.081  Score=37.00  Aligned_cols=25  Identities=12%  Similarity=-0.199  Sum_probs=19.8

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        31 i~G~nGsGKSTLl~~l~Gl~~p~~G   55 (205)
T cd03226          31 LTGKNGAGKTTLAKILAGLIKESSG   55 (205)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCce
Confidence            5678999999999987666666666

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=87.80  E-value=6.2  Score=26.53  Aligned_cols=66  Identities=12%  Similarity=0.064  Sum_probs=43.2

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhc--cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYF--NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM  106 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~--~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  106 (169)
                      +.+.+-|.|+|+...  ......+  ..+|.+++|...+ ..+......+++.+.+.   .-...-++.|+.+.
T Consensus        66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvv~N~~~~  133 (169)
T cd02037          66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV---NIPILGVVENMSYF  133 (169)
T ss_pred             CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhc---CCCeEEEEEcCCcc
Confidence            468899999998742  2222233  5789999998764 45666666666666432   12345678999874

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=87.77  E-value=0.084  Score=37.74  Aligned_cols=25  Identities=12%  Similarity=-0.229  Sum_probs=19.7

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        31 l~G~nGsGKSTLl~~l~G~~~p~~G   55 (235)
T cd03261          31 IIGPSGSGKSTLLRLIVGLLRPDSG   55 (235)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCce
Confidence            5678999999999977666556655

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=87.74  E-value=0.08  Score=36.21  Aligned_cols=25  Identities=16%  Similarity=-0.320  Sum_probs=19.2

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        31 i~G~nGsGKSTLl~~l~G~~~~~~G   55 (178)
T cd03229          31 LLGPSGSGKSTLLRCIAGLEEPDSG   55 (178)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCce
Confidence            5678999999999977655555555

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=87.71  E-value=0.063  Score=34.41  Aligned_cols=44  Identities=9%  Similarity=0.192  Sum_probs=25.2

Q ss_pred             hhccCCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030931           56 HYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANK  103 (169)
Q Consensus        56 ~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK  103 (169)
                      ..++.....++++|=-+.- + .....++..+.+   ..+.+++++|+-
T Consensus        81 ~~l~~~~~~~lviDe~~~l~~-~~~l~~l~~l~~---~~~~~vvl~G~~  125 (131)
T PF13401_consen   81 DALDRRRVVLLVIDEADHLFS-DEFLEFLRSLLN---ESNIKVVLVGTP  125 (131)
T ss_dssp             HHHHHCTEEEEEEETTHHHHT-HHHHHHHHHHTC---SCBEEEEEEESS
T ss_pred             HHHHhcCCeEEEEeChHhcCC-HHHHHHHHHHHh---CCCCeEEEEECh
Confidence            3455556678888864442 2 222233444433   457889998876

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=87.61  E-value=0.079  Score=37.18  Aligned_cols=25  Identities=12%  Similarity=-0.201  Sum_probs=19.5

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        32 l~G~nGsGKSTLl~~l~G~~~~~~G   56 (211)
T cd03225          32 IVGPNGSGKSTLLRLLNGLLGPTSG   56 (211)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCc
Confidence            5678999999999977665556555

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG3911 Predicted ATPase [General function prediction only]

Probab=87.57  E-value=0.077  Score=35.36  Aligned_cols=25  Identities=12%  Similarity=-0.112  Sum_probs=19.6

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |-+.+|+|||+|++.+......|..
T Consensus        14 ltGgpGaGKTtLL~aLa~~Gfatve   38 (183)
T COG3911          14 LTGGPGAGKTTLLAALARAGFATVE   38 (183)
T ss_pred             EeCCCCCcHHHHHHHHHHcCceeec
Confidence            4568999999999988666666655

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=87.48  E-value=0.091  Score=34.69  Aligned_cols=25  Identities=12%  Similarity=-0.282  Sum_probs=19.8

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        31 i~G~nGsGKStLl~~l~G~~~~~~G   55 (144)
T cd03221          31 LVGRNGAGKSTLLKLIAGELEPDEG   55 (144)
T ss_pred             EECCCCCCHHHHHHHHcCCCCCCce
Confidence            5678999999999977666666655

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=87.47  E-value=0.083  Score=37.32  Aligned_cols=25  Identities=12%  Similarity=-0.189  Sum_probs=19.9

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        33 i~G~nGsGKSTLl~~l~Gl~~~~~G   57 (220)
T cd03263          33 LLGHNGAGKTTTLKMLTGELRPTSG   57 (220)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCc
Confidence            5678999999999977666666665

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=87.44  E-value=0.082  Score=36.69  Aligned_cols=25  Identities=8%  Similarity=-0.118  Sum_probs=20.1

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        31 l~G~nGsGKSTLl~~l~G~~~~~~G   55 (195)
T PRK13541         31 IKGANGCGKSSLLRMIAGIMQPSSG   55 (195)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCc
Confidence            5678999999999977666666666

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=87.42  E-value=0.087  Score=37.26  Aligned_cols=25  Identities=12%  Similarity=-0.105  Sum_probs=19.4

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        31 i~G~nGsGKSTLl~~l~Gl~~~~~G   55 (222)
T cd03224          31 LLGRNGAGKTTLLKTIMGLLPPRSG   55 (222)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCc
Confidence            5678999999999977655556655

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=87.39  E-value=0.091  Score=37.53  Aligned_cols=25  Identities=12%  Similarity=-0.278  Sum_probs=19.7

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        40 l~G~nGsGKSTLl~~l~Gl~~~~~G   64 (233)
T PRK11629         40 IVGSSGSGKSTLLHLLGGLDTPTSG   64 (233)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCce
Confidence            5678999999999977666556655

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=87.32  E-value=0.085  Score=37.60  Aligned_cols=25  Identities=12%  Similarity=-0.196  Sum_probs=19.2

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        31 l~G~nGsGKSTLl~~l~Gl~~p~~G   55 (232)
T cd03218          31 LLGPNGAGKTTTFYMIVGLVKPDSG   55 (232)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCc
Confidence            5678999999999977655555555

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=87.32  E-value=0.072  Score=36.59  Aligned_cols=25  Identities=0%  Similarity=-0.243  Sum_probs=19.6

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        30 l~G~nGsGKSTLl~~l~Gl~~p~~G   54 (177)
T cd03222          30 IVGPNGTGKTTAVKILAGQLIPNGD   54 (177)
T ss_pred             EECCCCChHHHHHHHHHcCCCCCCc
Confidence            5678999999999977665556655

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=87.26  E-value=0.088  Score=35.52  Aligned_cols=25  Identities=12%  Similarity=-0.150  Sum_probs=19.5

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        31 l~G~nGsGKSTLl~~i~G~~~~~~G   55 (163)
T cd03216          31 LLGENGAGKSTLMKILSGLYKPDSG   55 (163)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCe
Confidence            5678999999999977666556555

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=87.20  E-value=0.095  Score=36.83  Aligned_cols=25  Identities=20%  Similarity=-0.109  Sum_probs=19.6

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        32 i~G~nGsGKSTLl~~l~G~~~~~~G   56 (214)
T cd03292          32 LVGPSGAGKSTLLKLIYKEELPTSG   56 (214)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCce
Confidence            5678999999999977666666655

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=87.16  E-value=0.082  Score=33.66  Aligned_cols=17  Identities=0%  Similarity=-0.150  Sum_probs=14.5

Q ss_pred             CccccCCCCCceeeeec
Q 030931            1 MLRVKQPYCTSCTLVKF   17 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f   17 (169)
                      +|.+.+|+|||++++.+
T Consensus         6 ~l~G~~G~GKTtl~~~l   22 (148)
T smart00382        6 LIVGPPGSGKTTLARAL   22 (148)
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            36679999999999976

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=87.13  E-value=6  Score=27.48  Aligned_cols=67  Identities=13%  Similarity=0.059  Sum_probs=41.4

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      .+.+.|.|+|..... .......+.+|.+|+|.+.. ..+...+.+..+.+.+ .  ....+-+|.||.|..
T Consensus       127 ~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~-~~~~~~~~~~~~~l~~-~--~~~~~gvVlN~~~~~  193 (204)
T TIGR01007       127 YFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAG-EIKKRDVQKAKEQLEQ-T--GSNFLGVVLNKVDIS  193 (204)
T ss_pred             cCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECC-CCCHHHHHHHHHHHHh-C--CCCEEEEEEeCcccc
Confidence            466888999863221 12234556799999999884 3444555544444422 1  224577899999964

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=87.10  E-value=0.093  Score=36.64  Aligned_cols=25  Identities=16%  Similarity=-0.154  Sum_probs=19.9

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        29 i~G~nGsGKSTLl~~l~G~~~~~~G   53 (206)
T TIGR03608        29 IIGESGSGKSTLLNIIGLLEKFDSG   53 (206)
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCe
Confidence            5678999999999987666666665

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=87.10  E-value=0.088  Score=37.56  Aligned_cols=25  Identities=8%  Similarity=-0.261  Sum_probs=19.8

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        36 l~G~nGsGKSTLl~~l~G~~~~~~G   60 (233)
T cd03258          36 IIGRSGAGKSTLIRCINGLERPTSG   60 (233)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCc
Confidence            5678999999999987666666655

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=87.07  E-value=0.092  Score=37.03  Aligned_cols=25  Identities=16%  Similarity=-0.152  Sum_probs=19.8

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        36 i~G~nGsGKSTLl~~l~Gl~~~~~G   60 (218)
T cd03266          36 LLGPNGAGKTTTLRMLAGLLEPDAG   60 (218)
T ss_pred             EECCCCCCHHHHHHHHhCCcCCCCc
Confidence            5678999999999987666666655

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=86.94  E-value=0.081  Score=35.99  Aligned_cols=16  Identities=13%  Similarity=0.011  Sum_probs=12.5

Q ss_pred             ccccCCCCCceeeeec
Q 030931            2 LRVKQPYCTSCTLVKF   17 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f   17 (169)
                      |.+..|+|||+|++++
T Consensus        29 l~G~~G~GKT~ll~~~   44 (185)
T PF13191_consen   29 LTGESGSGKTSLLRAL   44 (185)
T ss_dssp             E-B-TTSSHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHH
Confidence            5678999999999976

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=86.87  E-value=0.099  Score=36.97  Aligned_cols=25  Identities=12%  Similarity=-0.088  Sum_probs=19.4

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        31 i~G~nGsGKSTLl~~i~G~~~~~~G   55 (220)
T cd03265          31 LLGPNGAGKTTTIKMLTTLLKPTSG   55 (220)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCce
Confidence            5678999999999977665556555

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=86.75  E-value=0.11  Score=37.36  Aligned_cols=25  Identities=12%  Similarity=-0.312  Sum_probs=19.5

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        33 i~G~nGsGKSTLl~~l~Gl~~~~~G   57 (239)
T cd03296          33 LLGPSGSGKTTLLRLIAGLERPDSG   57 (239)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCce
Confidence            5678999999999977665556555

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=86.65  E-value=0.09  Score=37.83  Aligned_cols=25  Identities=16%  Similarity=-0.156  Sum_probs=20.0

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|||||||++-+..-..|+.|
T Consensus        35 i~G~nGsGKSTL~~~l~GLl~p~~G   59 (235)
T COG1122          35 LIGPNGSGKSTLLKLLNGLLKPTSG   59 (235)
T ss_pred             EECCCCCCHHHHHHHHcCcCcCCCC
Confidence            5678999999999987666666665

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=86.60  E-value=0.11  Score=36.63  Aligned_cols=25  Identities=12%  Similarity=-0.294  Sum_probs=19.5

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        31 i~G~nGsGKSTLl~~l~G~~~p~~G   55 (213)
T cd03259          31 LLGPSGCGKTTLLRLIAGLERPDSG   55 (213)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCe
Confidence            5678999999999977665556655

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=86.56  E-value=0.24  Score=36.98  Aligned_cols=16  Identities=13%  Similarity=-0.076  Sum_probs=13.7

Q ss_pred             CccccCCCCCceeeee
Q 030931            1 MLRVKQPYCTSCTLVK   16 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~   16 (169)
                      |+.+=|+.|||||+|.
T Consensus       147 mVvGvPNVGKSsLINa  162 (335)
T KOG2485|consen  147 MVVGVPNVGKSSLINA  162 (335)
T ss_pred             EEEcCCCCChHHHHHH
Confidence            5677899999999994

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=86.49  E-value=0.11  Score=37.37  Aligned_cols=25  Identities=12%  Similarity=-0.225  Sum_probs=19.1

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        33 l~G~nGsGKSTLl~~l~Gl~~~~~G   57 (243)
T TIGR02315        33 IIGPSGAGKSTLLRCINRLVEPSSG   57 (243)
T ss_pred             EECCCCCCHHHHHHHHhCCcCCCcc
Confidence            5678999999999977555555555

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=86.49  E-value=0.1  Score=37.04  Aligned_cols=25  Identities=12%  Similarity=-0.178  Sum_probs=19.8

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        36 i~G~nGsGKSTLl~~l~G~~~~~~G   60 (228)
T cd03257          36 LVGESGSGKSTLARAILGLLKPTSG   60 (228)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCc
Confidence            5678999999999977666666665

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=86.47  E-value=0.14  Score=36.95  Aligned_cols=15  Identities=7%  Similarity=-0.086  Sum_probs=12.8

Q ss_pred             ccccCCCCCceeeee
Q 030931            2 LRVKQPYCTSCTLVK   16 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~   16 (169)
                      ++++.|||||+|+..
T Consensus        18 iIG~sGSGKT~li~~   32 (241)
T PF04665_consen   18 IIGKSGSGKTTLIKS   32 (241)
T ss_pred             EECCCCCCHHHHHHH
Confidence            678999999997764

This is thought to be an ATPase involved in viral DNA packaging [].

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=86.45  E-value=0.089  Score=36.47  Aligned_cols=25  Identities=4%  Similarity=-0.257  Sum_probs=21.7

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      ++++.|||||||..-+..--.||.|
T Consensus        44 iIG~NGSGKSTLakMlaGmi~PTsG   68 (267)
T COG4167          44 IIGENGSGKSTLAKMLAGMIEPTSG   68 (267)
T ss_pred             EEccCCCcHhHHHHHHhcccCCCCc
Confidence            4679999999999988888888888

>PRK07261 topology modulation protein; Provisional

Probab=86.35  E-value=0.1  Score=35.52  Aligned_cols=18  Identities=11%  Similarity=-0.206  Sum_probs=15.0

Q ss_pred             ccccCCCCCceeeeecee
Q 030931            2 LRVKQPYCTSCTLVKFYL   19 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~   19 (169)
                      +.+.+|||||||..++..
T Consensus         5 i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          5 IIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEcCCCCCHHHHHHHHHH
Confidence            567999999999997743

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=86.31  E-value=0.11  Score=36.66  Aligned_cols=25  Identities=8%  Similarity=-0.104  Sum_probs=20.2

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        42 i~G~nGsGKSTLl~~i~G~~~~~~G   66 (214)
T PRK13543         42 VQGDNGAGKTTLLRVLAGLLHVESG   66 (214)
T ss_pred             EEcCCCCCHHHHHHHHhCCCCCCCe
Confidence            5678999999999987666666666

>PTZ00293 thymidine kinase; Provisional

Probab=86.30  E-value=1.7  Score=30.80  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=24.7

Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      +..|++++  |  +.+=|..+.++...+..    .++|+++.|-..|-.
T Consensus        76 ~~~dvI~I--D--EaQFf~~i~~~~~~l~~----~g~~VivaGLd~Df~  116 (211)
T PTZ00293         76 KNYDVIAI--D--EGQFFPDLVEFSEAAAN----LGKIVIVAALDGTFQ  116 (211)
T ss_pred             cCCCEEEE--E--chHhhHhHHHHHHHHHH----CCCeEEEEecCcccc
Confidence            55565443  3  23334455555555532    489999999999853

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=86.28  E-value=0.11  Score=36.49  Aligned_cols=25  Identities=16%  Similarity=-0.206  Sum_probs=19.2

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        31 l~G~nGsGKSTLl~~l~G~~~~~~G   55 (213)
T cd03301          31 LLGPSGCGKTTTLRMIAGLEEPTSG   55 (213)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCce
Confidence            5678999999999977655555555

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=86.28  E-value=0.11  Score=36.78  Aligned_cols=25  Identities=4%  Similarity=-0.327  Sum_probs=19.2

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        18 l~G~NGsGKSTLlk~i~Gl~~~~sG   42 (213)
T PRK15177         18 ILAAPGSGKTTLTRLLCGLDAPDEG   42 (213)
T ss_pred             EECCCCCCHHHHHHHHhCCccCCCC
Confidence            5678999999999976555555555

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=86.22  E-value=0.11  Score=36.58  Aligned_cols=25  Identities=12%  Similarity=-0.106  Sum_probs=19.1

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        33 l~G~nGsGKSTLl~~i~Gl~~~~~G   57 (214)
T TIGR02673        33 LTGPSGAGKTTLLKLLYGALTPSRG   57 (214)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCc
Confidence            5678999999999977655555555

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=86.18  E-value=0.11  Score=36.57  Aligned_cols=25  Identities=12%  Similarity=-0.142  Sum_probs=19.5

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        30 l~G~nGsGKSTLl~~l~G~~~p~~G   54 (213)
T cd03235          30 IVGPNGAGKSTLLKAILGLLKPTSG   54 (213)
T ss_pred             EECCCCCCHHHHHHHHcCCCCCCCC
Confidence            5678999999999977666666655

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=86.14  E-value=0.11  Score=36.51  Aligned_cols=25  Identities=8%  Similarity=-0.225  Sum_probs=19.3

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        30 i~G~nGsGKSTLl~~l~Gl~~~~~G   54 (211)
T cd03264          30 LLGPNGAGKTTLMRILATLTPPSSG   54 (211)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCcc
Confidence            5678999999999977655555555

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=86.14  E-value=0.11  Score=36.81  Aligned_cols=25  Identities=12%  Similarity=-0.300  Sum_probs=19.5

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        36 i~G~nGsGKSTLl~~i~G~~~~~~G   60 (221)
T TIGR02211        36 IVGSSGSGKSTLLHLLGGLDNPTSG   60 (221)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCc
Confidence            5678999999999977665556555

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK10908 cell division protein FtsE; Provisional

Probab=86.12  E-value=0.12  Score=36.68  Aligned_cols=25  Identities=12%  Similarity=-0.214  Sum_probs=20.0

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        33 i~G~nGsGKSTLl~~l~G~~~~~~G   57 (222)
T PRK10908         33 LTGHSGAGKSTLLKLICGIERPSAG   57 (222)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCce
Confidence            5678999999999987666666666

>PRK04195 replication factor C large subunit; Provisional

Probab=86.09  E-value=0.45  Score=38.02  Aligned_cols=19  Identities=5%  Similarity=-0.295  Sum_probs=15.0

Q ss_pred             ccccCCCCCceeeeeceee
Q 030931            2 LRVKQPYCTSCTLVKFYLL   20 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~   20 (169)
                      |-+.+|+|||++++.+...
T Consensus        44 L~GppG~GKTtla~ala~e   62 (482)
T PRK04195         44 LYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            4568999999999977443

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=86.07  E-value=3.3  Score=30.18  Aligned_cols=69  Identities=19%  Similarity=0.096  Sum_probs=40.3

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeE-EEEEeCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDM  106 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~Dl  106 (169)
                      .+.+.|+||+|...... ....+..||.+|++... +..++..+...+..+.......+.++ -++.|+.+.
T Consensus       117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~  186 (270)
T PRK13185        117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG  186 (270)
T ss_pred             cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh
Confidence            57789999987642221 22235678999998866 44455555444443322111235664 478899773

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=86.06  E-value=0.12  Score=37.04  Aligned_cols=25  Identities=12%  Similarity=-0.060  Sum_probs=19.5

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        32 i~G~nGsGKSTLl~~l~G~~~p~~G   56 (236)
T TIGR03864        32 LLGPNGAGKSTLFSLLTRLYVAQEG   56 (236)
T ss_pred             EECCCCCCHHHHHHHHhCCcCCCce
Confidence            5678999999999977655556655

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK01889 GTPase RsgA; Reviewed

Probab=85.99  E-value=0.1  Score=39.98  Aligned_cols=25  Identities=8%  Similarity=-0.239  Sum_probs=17.7

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      +.+.+|+|||||++.+.....+..|
T Consensus       200 lvG~sgvGKStLin~L~g~~~~~~G  224 (356)
T PRK01889        200 LLGSSGVGKSTLVNALLGEEVQKTG  224 (356)
T ss_pred             EECCCCccHHHHHHHHHHhccccee
Confidence            5678999999999976443334333

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=85.95  E-value=0.11  Score=35.56  Aligned_cols=25  Identities=12%  Similarity=-0.237  Sum_probs=18.7

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        33 i~G~nGsGKStLl~~l~G~~~~~~G   57 (178)
T cd03247          33 LLGRSGSGKSTLLQLLTGDLKPQQG   57 (178)
T ss_pred             EECCCCCCHHHHHHHHhccCCCCCC
Confidence            5678999999999976555555544

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=85.92  E-value=0.12  Score=37.81  Aligned_cols=25  Identities=12%  Similarity=-0.095  Sum_probs=18.5

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        32 i~G~nGsGKSTLl~~l~Gl~~p~~G   56 (271)
T PRK13638         32 LVGANGCGKSTLFMNLSGLLRPQKG   56 (271)
T ss_pred             EECCCCCCHHHHHHHHcCCCCCCcc
Confidence            5678999999999966554445544

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=85.89  E-value=0.22  Score=36.68  Aligned_cols=44  Identities=14%  Similarity=0.077  Sum_probs=31.4

Q ss_pred             cccCCCCCceeeeec---------eeeeeeeeeEEEEEEEE--C--CEEEEEEEcCC
Q 030931            3 RVKQPYCTSCTLVKF---------YLLFLLLVRFNVEKVQY--K--NVIFTVWDVGG   46 (169)
Q Consensus         3 ~~~~~~~Ktsll~~f---------~~~~~~t~~~~~~~~~~--~--~~~~~i~D~~G   46 (169)
                      .+..|-|||||+..+         .+...|++.....+.+.  .  ..++.|.||.|
T Consensus        48 vGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   48 VGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             eccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            467899999999953         34556666666555544  2  46788899998

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=85.88  E-value=3.4  Score=30.13  Aligned_cols=66  Identities=20%  Similarity=0.153  Sum_probs=38.1

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHH---HHHHHhcCCCCCCCeE-EEEEeCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ---EFQAIIKDPFMLNSVI-LVFANKQDM  106 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~pi-ivv~nK~Dl  106 (169)
                      .+.+.|.||+|...... ....+..||.++++...+ ..++.....   .+.....   ..+.++ .++.|+.+.
T Consensus       115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~---~~~l~~~giV~Nr~~~  184 (267)
T cd02032         115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAK---TYKVRLAGLIANRTDK  184 (267)
T ss_pred             cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhh---ccCCceEEEEEeCCCH
Confidence            46788899987642221 122367799999998764 333444333   3333221   134543 478999984

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=85.88  E-value=0.1  Score=35.51  Aligned_cols=25  Identities=8%  Similarity=-0.247  Sum_probs=18.9

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        33 i~G~nGsGKStLl~~l~G~~~~~~G   57 (173)
T cd03246          33 IIGPSGSGKSTLARLILGLLRPTSG   57 (173)
T ss_pred             EECCCCCCHHHHHHHHHhccCCCCC
Confidence            5678999999999976555555554

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=85.83  E-value=0.13  Score=36.61  Aligned_cols=25  Identities=12%  Similarity=-0.144  Sum_probs=20.0

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        53 i~G~nGsGKSTLl~~l~G~~~p~~G   77 (224)
T cd03220          53 LIGRNGAGKSTLLRLLAGIYPPDSG   77 (224)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCce
Confidence            5678999999999987666666666

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=85.80  E-value=0.11  Score=36.05  Aligned_cols=25  Identities=8%  Similarity=-0.201  Sum_probs=20.0

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|+|||||++-+.....|+.|
T Consensus        31 i~G~nGsGKSTLl~~l~G~~~~~~G   55 (198)
T TIGR01189        31 VTGPNGIGKTTLLRILAGLLRPDSG   55 (198)
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCcc
Confidence            5678899999999987666666665

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=85.80  E-value=0.12  Score=37.49  Aligned_cols=25  Identities=20%  Similarity=-0.055  Sum_probs=18.1

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        33 l~G~nGsGKSTLl~~l~Gl~~~~~G   57 (255)
T PRK11231         33 LIGPNGCGKSTLLKCFARLLTPQSG   57 (255)
T ss_pred             EECCCCCCHHHHHHHHhCCcCCCCc
Confidence            5678999999999966444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	169
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		4e-43
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		6e-43
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		6e-43
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		8e-43
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		2e-42
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		3e-42
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		7e-42
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		1e-41
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		4e-41
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		4e-41
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		4e-41
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		5e-41
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		6e-41
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		6e-41
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		7e-41
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		2e-40
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		3e-40
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		3e-40
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		4e-40
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		5e-40
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		2e-39
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		2e-39
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		3e-39
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		4e-36
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		4e-34
2x77_A	189	Crystal Structure Of Leishmania Major Adp Ribosylat		2e-33
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		6e-31
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		7e-31
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		2e-29
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		7e-29
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		7e-29
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		8e-29
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		2e-28
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		1e-26
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		2e-26
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		2e-26
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		5e-26
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		2e-25
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		5e-25
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		5e-25
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		6e-25
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		5e-24
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		3e-23
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		1e-17
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-15
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-14
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		2e-14
2gao_A	208	Crystal Structure Of Human Sar1a In Complex With Gd		1e-12
2fmx_A	195	An Open Conformation Of Switch I Revealed By Sar1-g		1e-12
1f6b_A	198	Crystal Structure Of Sar1-Gdp Complex Length = 198		1e-12
2fa9_A	189	The Crystal Structure Of Sar1[h79g]-gdp Provides In		3e-12
2qtv_B	167	Structure Of Sec23-Sar1 Complexed With The Active F		4e-11
1m2o_B	190	Crystal Structure Of The Sec23-Sar1 Complex Length		5e-11
3ah8_A	355	Structure Of Heterotrimeric G Protein Galpha-Q Beta		6e-07
2bcj_Q	353	Crystal Structure Of G Protein-coupled Receptor Kin		7e-07
4ekc_A	347	Structure Of Human Regulator Of G Protein Signaling		7e-07
4gnk_A	353	Crystal Structure Of Galphaq In Complex With Full-l		7e-07
3c7k_A	333	Molecular Architecture Of Galphao And The Structura		8e-07
3ohm_A	327	Crystal Structure Of Activated G Alpha Q Bound To I		8e-07
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-05
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-05
3d7m_A	354	Crystal Structure Of The G Protein Fast-Exchange Do		3e-05
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		3e-05
3onw_A	328	Structure Of A G-Alpha-I1 Mutant With Enhanced Affi		3e-05
3qi2_A	328	A Galpha P-Loop Mutation Prevents Transition To The		3e-05
1gp2_A	353	G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 Wi		3e-05
4g5o_A	330	Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length		3e-05
2ik8_A	324	Crystal Structure Of The Heterodimeric Complex Of H		3e-05
1kjy_A	325	Crystal Structure Of Human G[alpha]i1 Bound To The		3e-05
1y3a_A	329	Structure Of G-Alpha-I1 Bound To A Gdp-Selective Pe		3e-05
2ihb_A	323	Crystal Structure Of The Heterodimeric Complex Of H		3e-05
2xns_A	327	Crystal Structure Of Human G Alpha I1 Bound To A De		3e-05
3ffb_A	360	Crystal Structure Of A Fast Activating G Protein Mu		3e-05
2gtp_A	323	Crystal Structure Of The Heterodimeric Complex Of H		3e-05
3qe0_A	325	A Galpha-I1 P-Loop Mutation Prevents Transition To		3e-05
4g5r_A	330	Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330		3e-05
4g5q_A	330	Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330		3e-05
2g83_A	313	Structure Of Activated G-alpha-i1 Bound To A Nucleo		3e-05
1bh2_A	315	A326s Mutant Of An Inhibitory Alpha Subunit Length		3e-05
1as0_A	353	Gtp-Gamma-S Bound G42v Gia1 Length = 353		3e-05
1svk_A	353	Structure Of The K180p Mutant Of Gi Alpha Subunit B		4e-05
2zjy_A	356	Structure Of The K349p Mutant Of Gi Alpha 1 Subunit		4e-05
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		4e-05
2ode_A	350	Crystal Structure Of The Heterodimeric Complex Of H		4e-05
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		4e-05
3v00_C	356	Studies Of A Constitutively Active G-Alpha Subunit		4e-05
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		4e-05
1fqj_A	325	Crystal Structure Of The Heterotrimeric Complex Of		5e-05
1got_A	350	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		7e-05
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		8e-05
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		9e-05
4fmc_B	171	Espg-Rab1 Complex Length = 171		9e-05
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		9e-05
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-04
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		1e-04
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-04
1gg2_A	353	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-04
3ums_A	354	Crystal Structure Of The G202a Mutant Of Human G-Al		1e-04
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-04
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-04
1gil_A	353	Structure Of Active Conformations Of Gia1 And The M		3e-04
3umr_A	354	Crystal Structure Of The G202d Mutant Of Human G-Al		3e-04
1cul_C	380	Complex Of Gs-Alpha With The Catalytic Domains Of M		4e-04
1azs_C	402	Complex Of Gs-Alpha With The Catalytic Domains Of M		4e-04
3sn6_A	380	Crystal Structure Of The Beta2 Adrenergic Receptor-		4e-04
1cs4_C	394	Complex Of Gs-Alpha With The Catalytic Domains Of M		4e-04
1cjk_C	402	Complex Of Gs-Alpha With The Catalytic Domains Of M		4e-04
4fid_A	340	Crystal Structure Of A Heterotrimeric G-Protein Sub		4e-04
1shz_A	340	Crystal Structure Of The P115rhogef Rgrgs Domain In		5e-04
1zcb_A	362	Crystal Structure Of G Alpha 13 In Complex With Gdp		5e-04
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		5e-04
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		6e-04
2xtz_A	354	Crystal Structure Of The G Alpha Protein Atgpa1 Fro		6e-04
3cx7_A	338	Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co		7e-04
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		7e-04

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score =  170 bits (430), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 99/128 (77%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +
Sbjct: 37  ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 96
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL
Sbjct: 97  DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 156
Query: 150 ASTLKEMR 157
           ++ L+  +
Sbjct: 157 SNQLRNQK 164

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score =  169 bits (429), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 99/128 (77%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +
Sbjct: 53  ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 112
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL
Sbjct: 113 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 172
Query: 150 ASTLKEMR 157
           ++ L+  +
Sbjct: 173 SNQLRNQK 180

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score =  169 bits (428), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 99/128 (77%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +
Sbjct: 54  ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 113
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL
Sbjct: 114 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 173
Query: 150 ASTLKEMR 157
           ++ L+  +
Sbjct: 174 SNQLRNQK 181

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score =  169 bits (427), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 99/128 (77%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +
Sbjct: 202 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 261
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL
Sbjct: 262 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 321
Query: 150 ASTLKEMR 157
           ++ L+  +
Sbjct: 322 SNQLRNQK 329

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score =  168 bits (425), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 75/125 (60%), Positives = 97/125 (77%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V+YKN+ FTVWDVGGQ+K+RPLWRHY+ NT  +I+VVDS DR+RIG+A++E   ++ +
Sbjct: 54  ETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNE 113
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             M N+++LVFANK D+  AM+  EV E LGL  +KNRKW+ Q +CA  GDGLYEGLDWL
Sbjct: 114 DEMRNAILLVFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLYEGLDWL 173
Query: 150 ASTLK 154
           A  LK
Sbjct: 174 ADNLK 178

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score =  167 bits (422), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 72/128 (56%), Positives = 98/128 (76%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V+YKN+ FTVWDVGG +K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +
Sbjct: 39  ETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 98
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGLDWL
Sbjct: 99  DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 158
Query: 150 ASTLKEMR 157
           ++ L+  +
Sbjct: 159 SNQLRNQK 166

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score =  166 bits (419), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 75/131 (57%), Positives = 94/131 (71%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D
Sbjct: 359 ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 418
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL
Sbjct: 419 REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 478
Query: 150 ASTLKEMRAAG 160
            S  K   AA 
Sbjct: 479 TSNYKSKLAAA 489

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score =  165 bits (418), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 72/128 (56%), Positives = 96/128 (75%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V+++N+ FTVWDVGGQ+K+RPLWRHY++NTDGLI+VVDS DRERI  A++E   +I +
Sbjct: 54  ETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINE 113
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             + +++ILVFANKQD+  AM+  EV E L L  ++ R W IQ TCA +GDGLYEG DWL
Sbjct: 114 EELKDAIILVFANKQDLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWL 173
Query: 150 ASTLKEMR 157
            + L   +
Sbjct: 174 TTHLNNAK 181

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score =  163 bits (413), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 71/125 (56%), Positives = 97/125 (77%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E VQYKN+ FTVWDVGGQ+++R LWRHY+ NT+G+I+VVDS DR RIG+A++  Q ++ +
Sbjct: 37  ETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNE 96
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             + N+  LVFANKQD+  AM+  E+ E LGL  ++NR W IQ TCA  G+GLYEGL+WL
Sbjct: 97  DELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWL 156
Query: 150 ASTLK 154
           +++LK
Sbjct: 157 SNSLK 161

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score =  163 bits (413), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 71/125 (56%), Positives = 97/125 (77%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E VQYKN+ FTVWDVGGQ+++R LWRHY+ NT+G+I+V+DS DR RIG+A++  Q ++ +
Sbjct: 54  ETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNE 113
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             + N+V LVFANKQD+  AM+  E+ E LGL  ++NR W IQ TCA  G+GLYEGL+WL
Sbjct: 114 DELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWL 173
Query: 150 ASTLK 154
           ++ LK
Sbjct: 174 SNNLK 178

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score =  163 bits (412), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 70/124 (56%), Positives = 95/124 (76%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DR+R+ +A+ E   ++ +
Sbjct: 57  ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 116
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             + ++V+LVFANKQD+  AM   E+ + LGL  L+ R W+IQ TCA  G+GLYEGLDWL
Sbjct: 117 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 176
Query: 150 ASTL 153
           ++ +
Sbjct: 177 SNNI 180

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score =  163 bits (412), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 71/125 (56%), Positives = 97/125 (77%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E VQYKN+ FTVWDVGGQ+++R LWRHY+ NT+G+I+VVDS DR RIG+A++  Q ++ +
Sbjct: 54  ETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNE 113
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             + N+  LVFANKQD+  AM+  E+ E LGL  ++NR W IQ TCA  G+GLYEGL+WL
Sbjct: 114 DELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWL 173
Query: 150 ASTLK 154
           +++LK
Sbjct: 174 SNSLK 178

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score =  162 bits (411), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 73/125 (58%), Positives = 92/125 (73%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D
Sbjct: 49  ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 108
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL
Sbjct: 109 REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 168
Query: 150 ASTLK 154
            S  K
Sbjct: 169 TSNYK 173

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score =  162 bits (411), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 73/125 (58%), Positives = 92/125 (73%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D
Sbjct: 37  ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 96
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL
Sbjct: 97  REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 156
Query: 150 ASTLK 154
            S  K
Sbjct: 157 TSNYK 161

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score =  162 bits (411), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 73/125 (58%), Positives = 92/125 (73%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D
Sbjct: 50  ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 109
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL
Sbjct: 110 REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 169
Query: 150 ASTLK 154
            S  K
Sbjct: 170 TSNYK 174

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score =  161 bits (407), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 72/122 (59%), Positives = 91/122 (74%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D
Sbjct: 37  ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 96
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL
Sbjct: 97  REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 156
Query: 150 AS 151
            S
Sbjct: 157 TS 158

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score =  160 bits (406), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 71/126 (56%), Positives = 97/126 (76%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ ++  E Q ++++
Sbjct: 66  ETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQE 125
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             + ++V+LVFANKQDM  AM   E+ + LGL  L++R W++Q TCA +G GLY+GLDWL
Sbjct: 126 DELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWL 185
Query: 150 ASTLKE 155
           +  L +
Sbjct: 186 SHELSK 191

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score =  160 bits (405), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 72/127 (56%), Positives = 92/127 (72%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V YKNV F VWDVGG +K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D
Sbjct: 39  ETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 98
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL
Sbjct: 99  REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 158
Query: 150 ASTLKEM 156
            S  K +
Sbjct: 159 TSNYKSL 165

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score =  160 bits (404), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 72/125 (57%), Positives = 91/125 (72%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V YKNV F VWDVGG +K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D
Sbjct: 40  ETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 99
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL
Sbjct: 100 REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 159
Query: 150 ASTLK 154
            S  K
Sbjct: 160 TSNYK 164

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score =  159 bits (403), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 72/125 (57%), Positives = 91/125 (72%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V YKNV F VWDVGG +K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D
Sbjct: 50  ETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 109
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL
Sbjct: 110 REMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 169
Query: 150 ASTLK 154
            S  K
Sbjct: 170 TSNYK 174

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 71/125 (56%), Positives = 90/125 (72%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE   II D
Sbjct: 37  ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND 96
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
               +++IL+FANKQD+  A  P E+ E LGL  +++R W++Q +CA  GDGLYEGL WL
Sbjct: 97  REXRDAIILIFANKQDLPDAXKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 156
Query: 150 ASTLK 154
            S  K
Sbjct: 157 TSNYK 161

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score =  157 bits (398), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 70/126 (55%), Positives = 95/126 (75%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V+YKN+ FTVWDVGGQ+++RPLW+HYF NT GLI+VVDS DRERI +   E Q ++  
Sbjct: 54  ETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLV 113
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             + ++V+L+FANKQD+  AM   E+ + LGL  L+NR W++Q TCA +G GLYEGLDWL
Sbjct: 114 DELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWL 173
Query: 150 ASTLKE 155
           ++ L +
Sbjct: 174 SNELSK 179

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score =  157 bits (396), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 95/125 (76%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E VQY N+ FTVWDVGGQ+++R LWRHY+ NT+G+I+VVDS DR RIG+A++  Q ++ +
Sbjct: 54  ECVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNE 113
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             + N+  LVFANKQD+  AM+  E+ E LGL  ++NR W IQ TCA  G+GLYEGL+WL
Sbjct: 114 DELCNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWL 173
Query: 150 ASTLK 154
           ++ LK
Sbjct: 174 SNCLK 178

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score =  146 bits (369), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 68/125 (54%), Positives = 90/125 (72%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V YKN+ F VWD+GGQ  +RP WR Y++NTD +IYVVDS DR+RIG +K E  A++++
Sbjct: 39  ETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE 98
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             +  ++++VFANKQDM+ AMTP E+   LGL  LK+RKW I  T A KG GL E ++WL
Sbjct: 99  EELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWL 158
Query: 150 ASTLK 154
             TLK
Sbjct: 159 VETLK 163

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score =  140 bits (353), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/125 (52%), Positives = 88/125 (70%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V YKN+ F VWD+GG   +RP WR Y++NTD +IYVVDS DR+RIG +K E  A++++
Sbjct: 41  ETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE 100
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             +  ++++VFANKQDM+ AMT  E+   LGL  LK+RKW I  T A KG GL E ++WL
Sbjct: 101 EELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWL 160
Query: 150 ASTLK 154
             TLK
Sbjct: 161 VETLK 165

>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189

Iteration: 1
 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 62/126 (49%), Positives = 87/126 (69%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E +QYKN+ F VWD+GGQ  +RP WR YF++TD +IYVVDS DR+R+G AK E  A++ +
Sbjct: 59  ETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDE 118
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             +  S++L+FANKQD+  A +  E+ E LG+  + NR W I  + +  GDGL EG+DWL
Sbjct: 119 DELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWL 178
Query: 150 ASTLKE 155
              L+E
Sbjct: 179 VERLRE 184

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score =  129 bits (325), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 83/124 (66%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E++  KN  F +WD+GGQE LR  W  Y++NT+ +I VVDS+DRER+   K+E   ++  
Sbjct: 53  EEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAH 112
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             +  + +L+FANKQDMKG MT  E+ + L L  +K+  WHIQ  CAL G+GL +GL+W+
Sbjct: 113 EDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWM 172
Query: 150 ASTL 153
            S +
Sbjct: 173 TSRI 176

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score =  129 bits (324), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 56/126 (44%), Positives = 86/126 (68%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E + YKN+   VWD+GGQ  +RP WR Y+ +T  +I+VVDS D++R+  A +E   ++++
Sbjct: 55  ETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQE 114
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             + ++ +LVFANKQD  GA++  EV + L L +LK+R W I  + A+KG+G+ EGLDWL
Sbjct: 115 EELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174
Query: 150 ASTLKE 155
              +KE
Sbjct: 175 IDVIKE 180

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 83/125 (66%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E V YKN+ F VWD+GG   +RP WR Y++NTD +IYVVDS DR+RIG +K E  A +++
Sbjct: 44  ETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEE 103
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             +  ++++VFANKQD + A T  E    LGL  LK+RKW I  T A KG GL E  +WL
Sbjct: 104 EELRKAILVVFANKQDXEQAXTSSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWL 163
Query: 150 ASTLK 154
             TLK
Sbjct: 164 VETLK 168

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score =  122 bits (307), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 81/125 (64%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E++   N  F +WD+GGQE LR  W  Y+ NT+ +I VVDS DRERI   ++E   ++  
Sbjct: 53  EEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 112
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             +  + +L+FANKQD+K  MT  E+ + L L  +K+ +WHIQ  CAL G+GL +GL+W+
Sbjct: 113 EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 172
Query: 150 ASTLK 154
            S LK
Sbjct: 173 MSRLK 177

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score =  122 bits (307), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 81/125 (64%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E++   N  F +WD+GGQE LR  W  Y+ NT+ +I VVDS DRERI   ++E   ++  
Sbjct: 53  EEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 112
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             +  + +L+FANKQD+K  MT  E+ + L L  +K+ +WHIQ  CAL G+GL +GL+W+
Sbjct: 113 EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 172
Query: 150 ASTLK 154
            S LK
Sbjct: 173 MSRLK 177

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score =  122 bits (307), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 81/125 (64%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E++   N  F +WD+GGQE LR  W  Y+ NT+ +I VVDS DRERI   ++E   ++  
Sbjct: 59  EEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 118
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             +  + +L+FANKQD+K  MT  E+ + L L  +K+ +WHIQ  CAL G+GL +GL+W+
Sbjct: 119 EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 178
Query: 150 ASTLK 154
            S LK
Sbjct: 179 MSRLK 183

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 80/124 (64%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E++   N  F +WD+GGQE LR  W  Y+ NT+ +I VVDS DRERI   ++E   ++  
Sbjct: 58  EEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH 117
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             +  + +L+FANKQD+K  MT  E+ + L L  +K+ +WHIQ  CAL G+GL +GL+W+
Sbjct: 118 EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 177
Query: 150 ASTL 153
            S L
Sbjct: 178 MSRL 181

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 80/118 (67%)
Query: 32  VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
           ++++     +WDVGGQ+ LR  WR+YF +TDGLI+VVDS DR+R+   ++E Q+++ +  
Sbjct: 57  LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 116
Query: 92  MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
           +  + +L+FANKQD+ GA++   + E L L  +++  W IQG  A+ G+ L  G+DWL
Sbjct: 117 LAGATLLIFANKQDLPGALSXNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 80/118 (67%)
Query: 32  VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
           ++++     +WDVGGQ+ LR  WR+YF +TDGLI+VVDS DR+R+   ++E Q+++ +  
Sbjct: 57  LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 116
Query: 92  MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
           +  + +L+FANKQD+ GA++   + E L L  +++  W IQG  A+ G+ L  G+DWL
Sbjct: 117 LAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 79/118 (66%)
Query: 32  VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
           ++++     +WDVGGQ+ LR  WR+YF +TDGLI+VVDS DR+R    ++E Q+++ +  
Sbjct: 57  LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQRELQSLLVEER 116
Query: 92  MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
           +  + +L+FANKQD+ GA++   + E L L  +++  W IQG  A+ G+ L  G+DWL
Sbjct: 117 LAGATLLIFANKQDLPGALSXNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 174

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score =  113 bits (283), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 80/118 (67%)
Query: 32  VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
           ++++     +WDVGGQ+ LR  WR+YF +TDGLI+VVDS DR+R+   ++E Q+++ +  
Sbjct: 55  LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 114
Query: 92  MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
           +  + +L+FANKQD+ GA++   + E L L  +++  W IQG  A+ G+ L  G+DWL
Sbjct: 115 LAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWL 172

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 79/118 (66%)
Query: 32  VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
           ++++     +WDVGG + LR  WR+YF +TDGLI+VVDS DR+R+   ++E Q+++ +  
Sbjct: 40  LEHRGFKLNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 99
Query: 92  MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
           +  + +L+FANKQD+ GA++   + E L L  +++  W IQG  A+ G+ L  G+DWL
Sbjct: 100 LAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 157

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 77/120 (64%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           + VQ +     VWD+GGQ K+RP WR YF NTD LIYV+DS DR+R  +  QE   ++++
Sbjct: 54  KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 113
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             +    +L+FANKQD+  A    E+ EGL L  +++R W IQ   AL G+G+ +G++W+
Sbjct: 114 EKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 173

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 77/120 (64%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           + VQ +     VWD+GGQ K+RP WR YF NTD LIYV+DS DR+R  +  QE   ++++
Sbjct: 53  KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 112
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             +    +L+FANKQD+  A    E+ EGL L  +++R W IQ   AL G+G+ +G++W+
Sbjct: 113 EKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score =  109 bits (273), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 77/120 (64%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           + VQ +     VWD+GGQ K+RP WR YF NTD LIYV+DS DR+R  +  QE   ++++
Sbjct: 41  KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 100
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             +    +L+FANKQD+  A    E+ EGL L  +++R W IQ   AL G+G+ +G++W+
Sbjct: 101 EKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 160

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 76/120 (63%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           + VQ +     VWD+GG  K+RP WR YF NTD LIYV+DS DR+R  +  QE   ++++
Sbjct: 41  KSVQSQGFKLNVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 100
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             +    +L+FANKQD+  A    E+ EGL L  +++R W IQ   AL G+G+ +G++W+
Sbjct: 101 EKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 160

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score =  103 bits (258), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 84/131 (64%), Gaps = 2/131 (1%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           EK +  ++ FTV+D+ GQ + R LW HY+     +I+V+DS DR R+  AK+E   ++  
Sbjct: 60  EKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNH 119
Query: 90  PFMLNS--VILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 147
           P + +    IL FANK D++ A+T ++V + L L ++K++ WHI  + A+KG+GL EG+D
Sbjct: 120 PDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVD 179
Query: 148 WLASTLKEMRA 158
           WL   ++ ++ 
Sbjct: 180 WLQDQIQTVKT 190

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 69/131 (52%), Gaps = 8/131 (6%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E  +   V FTV+D+GG +K R LW  Y++N D +I+VVDS D  R+   K E QA++K 
Sbjct: 56  ETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKH 115
Query: 90  -------PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDG 141
                  P       L FANK D  GA T  E+ E L L  L  +  + I  +  LKG G
Sbjct: 116 EDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTG 175
Query: 142 LYEGLDWLAST 152
           ++EG  WL  T
Sbjct: 176 VHEGFSWLQET 186

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 65/128 (50%)
Query: 31  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP 90
           K+   NV   +WD+GGQ + R +W  Y      ++Y+VD+ D+E+I  +K E   ++  P
Sbjct: 61  KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP 120
Query: 91  FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150
            +    +LV  NK+D+ GA+   E+ E + L  +++R+         + D +   L WL 
Sbjct: 121 QLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 180
Query: 151 STLKEMRA 158
              K  R+
Sbjct: 181 QHSKSRRS 188

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%)
Query: 31  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP 90
           K+   NV   +WD+GGQ + R +W  Y      ++Y+VD+ D+E+I  +K E   ++  P
Sbjct: 70  KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP 129
Query: 91  FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
            +    +LV  NK+D+ GA+   E+ E + L  +++R+         + D +   L WL
Sbjct: 130 QLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 188

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 62/119 (52%)
Query: 31  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP 90
           KV   NV   +WD+GGQ + R +W  Y    + ++Y++D+ DRE+I  ++ E   ++  P
Sbjct: 61  KVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKP 120
Query: 91  FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
            +    +LV  NK+D+  A+   ++ E + L  +++R+         + D +   L WL
Sbjct: 121 QLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179

>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E++    + FT +D+GG E+ R +W++Y    +G++++VD  D  R+ ++K E  A++ D
Sbjct: 72  EELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTD 131
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCAL 137
             + N  IL+  NK D   A++  ++ E  GL+            +L  R   +     L
Sbjct: 132 ETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVL 191
Query: 138 KGDGLYEGLDWLA 150
           K  G  EG  WL+
Sbjct: 192 KRQGYGEGFRWLS 204

>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E++    + FT +D+GG  + R +W++Y    +G++++VD  D ER+ ++K+E  +++ D
Sbjct: 59  EELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD 118
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCAL 137
             + N  IL+  NK D   A++   + E  GL+            +L  R   +     L
Sbjct: 119 ETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL 178
Query: 138 KGDGLYEGLDWLA 150
           K  G  EG  W+A
Sbjct: 179 KRQGYGEGFRWMA 191

>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E++    + FT +D+GG  + R +W++Y    +G++++VD  D ER+ ++K+E  +++ D
Sbjct: 62  EELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD 121
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCAL 137
             + N  IL+  NK D   A++   + E  GL+            +L  R   +     L
Sbjct: 122 ETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL 181
Query: 138 KGDGLYEGLDWLA 150
           K  G  EG  W+A
Sbjct: 182 KRQGYGEGFRWMA 194

>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 12/133 (9%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E++    + FT +D+GG  + R +W++Y    +G++++VD  D ER+ ++K+E  +++ D
Sbjct: 53  EELTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD 112
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCAL 137
             + N  IL+  NK D   A++   + E  GL+            +L  R   +     L
Sbjct: 113 ETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL 172
Query: 138 KGDGLYEGLDWLA 150
           K  G  EG  W+A
Sbjct: 173 KRQGYGEGFRWMA 185

>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E++   N+ FT +D+GG  + R LW+ YF   +G++++VD+ D ER  +A+ E  A+   
Sbjct: 38  EELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNI 97
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGT--------CALKGDG 141
             + +   ++  NK D   A++  E+   LGL +    +  I+G           +  +G
Sbjct: 98  AELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQ-RIEGQRPVEVFMCSVVMRNG 156
Query: 142 LYEGLDWLA 150
             E   WL+
Sbjct: 157 YLEAFQWLS 165

>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 30  EKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKD 89
           E++   N+ FT +D+GG  + R LW+ YF   +G++++VD+ D ER  +A+ E  A+   
Sbjct: 60  EELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNI 119
Query: 90  PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGT--------CALKGDG 141
             + +   ++  NK D   A++  E+   LGL +    +  I+G           +  +G
Sbjct: 120 AELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQ-RIEGQRPVEVFMCSVVMRNG 178
Query: 142 LYEGLDWLA 150
             E   WL+
Sbjct: 179 YLEAFQWLS 187

>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In Complex With An Inhibitor Ym-254890 Length = 355

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSLDRERIGKAKQEFQ 84
           ++VIF + DVGGQ   R  W H F N   +++          +V+S +  R+ ++K  F+
Sbjct: 193 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFR 252
Query: 85  AIIKDPFMLNSVILVFANKQDM 106
            II  P+  NS +++F NK+D+
Sbjct: 253 TIITYPWFQNSSVILFLNKKDL 274

>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 353

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSLDRERIGKAKQEFQ 84
           ++VIF + DVGGQ   R  W H F N   +++          +V+S +  R+ ++K  F+
Sbjct: 191 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFR 250
Query: 85  AIIKDPFMLNSVILVFANKQDM 106
            II  P+  NS +++F NK+D+
Sbjct: 251 TIITYPWFQNSSVILFLNKKDL 272

>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2 (rgs2) In Complex With Murine Galpha-q(r183c) Length = 347

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSLDRERIGKAKQEFQ 84
           ++VIF + DVGGQ   R  W H F N   +++          +V+S +  R+ ++K  F+
Sbjct: 185 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFR 244
Query: 85  AIIKDPFMLNSVILVFANKQDM 106
            II  P+  NS +++F NK+D+
Sbjct: 245 TIITYPWFQNSSVILFLNKKDL 266

>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length Human Plcbeta3 Length = 353

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSLDRERIGKAKQEFQ 84
           ++VIF + DVGGQ   R  W H F N   +++          +V+S +  R+ ++K  F+
Sbjct: 191 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFR 250
Query: 85  AIIKDPFMLNSVILVFANKQDM 106
            II  P+  NS +++F NK+D+
Sbjct: 251 TIITYPWFQNSSVILFLNKKDL 272

>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 333

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV-----DSLDRE-----RIGKAKQEF 83
           +KN+ F ++DVGGQ   R  W H F +   +I+ V     D +  E     R+ ++   F
Sbjct: 171 FKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRMHESLMLF 230
Query: 84  QAIIKDPFMLNSVILVFANKQDMKGA---MTPMEVC 116
            +I  + F +++ I++F NK+D+ G     +P+ +C
Sbjct: 231 DSICNNKFFIDTSIILFLNKKDLFGEKIKKSPLTIC 266

>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its Effector Phospholipase C Beta 3 Length = 327

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSLDRERIGKAKQEFQ 84
           ++VIF + DVGGQ   R  W H F N   +++          +V+S +  R+ ++K  F+
Sbjct: 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFR 224
Query: 85  AIIKDPFMLNSVILVFANKQDM 106
            II  P+  NS +++F NK+D+
Sbjct: 225 TIITYPWFQNSSVILFLNKKDL 246

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
           K V   +WD  GQE+ R +   Y+  + G+I V D  D+E     K   Q I  D +  +
Sbjct: 55  KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATS 112
Query: 95  SVI-LVFANKQDMK 107
           +V+ L+  NK D+K
Sbjct: 113 TVLKLLVGNKCDLK 126

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
           K V   +WD  GQE+ R +   Y+  + G+I V D  D+E     K   Q I  D +  +
Sbjct: 55  KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATS 112
Query: 95  SVI-LVFANKQDMK 107
           +V+ L+  NK D+K
Sbjct: 113 TVLKLLVGNKCDLK 126

>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double Mutant I56cQ333C Length = 354

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 191 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 250
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 251 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 286

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
           K V   +WD  GQE+ R +   Y+  + G+I V D  D+E     K   Q I  D +  +
Sbjct: 68  KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATS 125
Query: 95  SVI-LVFANKQDMK 107
           +V+ L+  NK D+K
Sbjct: 126 TVLKLLVGNKCDLK 139

>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity For The Rgs14 Goloco Motif. Length = 328

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 165 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 224
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 225 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 260

>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The Activated State: G42r Bound To Rgs14 Goloco Length = 328

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 165 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 224
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 225 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 260

>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 190 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285

>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length = 330

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 167 FKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +   + I++F NK+D+   K   +P+ +C
Sbjct: 227 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC 262

>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 324

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 161 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 220
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 221 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 256

>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 Length = 325

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 162 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 221
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 222 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 257

>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange Length = 329

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 166 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 225
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 226 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 261

>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs10 And Activated Gi Alpha 3 Length = 323

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 160 FKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 219
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +   + I++F NK+D+   K   +P+ +C
Sbjct: 220 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC 255

>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of Rgs14 Length = 327

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 164 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 223
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 224 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 259

>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs1 And Activated Gi Alpha 1 Length = 323

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 160 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 219
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 220 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 255

>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The Activated State Length = 325

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 162 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 221
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 222 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 257

>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 167 FKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +   + I++F NK+D+   K   +P+ +C
Sbjct: 227 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC 262

>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 167 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 227 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 262

>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide- State-selective Peptide: Minimal Determinants For Recognizing The Active Form Of A G Protein Alpha Subunit Length = 313

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 159 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 218
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 219 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 254

>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit Length = 315

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 160 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 219
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 220 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 255

>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1 Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 190 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285

>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 190 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285

>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound To Alf4 And Gdp Length = 356

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 193 FKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 252
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 253 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 288

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
           K +   +WD  GQE+ R +   Y+    G+I V D  D+E     KQ  Q I  D +   
Sbjct: 56  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASE 113
Query: 95  SV-ILVFANKQDMKGA-----MTPMEVCEGLGL 121
           +V  L+  NK D+         T  E  + LG+
Sbjct: 114 NVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGI 146

>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 350

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 190 FKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +   + I++F NK+D+   K   +P+ +C
Sbjct: 250 DSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC 285

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
           K +   +WD  GQE+ R +   Y+    G+I V D  D+E     KQ  Q I  D +   
Sbjct: 56  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASE 113
Query: 95  SV-ILVFANKQDMKGA-----MTPMEVCEGLGL 121
           +V  L+  NK D+         T  E  + LG+
Sbjct: 114 NVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGI 146

>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide Insights Into The Mechanism Of G Protein Activation. Length = 356

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++   F
Sbjct: 193 FKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMHLF 252
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 253 NSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 288

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 32  VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
           ++ K V   +WD  GQE+ R +   Y+    G+I V D  DR+     KQ  Q I  D +
Sbjct: 53  LENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEI--DRY 110
Query: 92  MLNSV-ILVFANKQDM 106
            + +V  L+  NK D+
Sbjct: 111 AMENVNKLLVGNKCDL 126

>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 13/99 (13%)
Query: 31  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAK 80
           +  +K++ F ++DVGGQ   R  W H F     +I+ V   D +          R+ ++ 
Sbjct: 159 QFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESM 218
Query: 81  QEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
           + F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 219 KLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 257

>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV----------DSLDRERIGKAKQEF 83
           +K++ F  +DVGGQ   R  W H F     +I+ V          +  +  R  ++ + F
Sbjct: 187 FKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEXNRXHESXKLF 246
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 247 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 282

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
           K +   +WD  GQE+ R +   Y+    G+I V D  D+E     KQ  Q I  D +   
Sbjct: 46  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASE 103
Query: 95  SV-ILVFANKQDMKGA-----MTPMEVCEGLGL 121
           +V  L+  NK D+         T  E  + LG+
Sbjct: 104 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 136

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
           K +   +WD  GQE+ R +   Y+    G+I V D  D+E     KQ  Q I  D +   
Sbjct: 53  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASE 110
Query: 95  SV-ILVFANKQDMKGA-----MTPMEVCEGLGL 121
           +V  L+  NK D+         T  E  + LG+
Sbjct: 111 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 143

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
           K +   +WD  GQE+ R +   Y+    G+I V D  D+E     KQ  Q I  D +   
Sbjct: 53  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASE 110
Query: 95  SV-ILVFANKQDMKGA-----MTPMEVCEGLGL 121
           +V  L+  NK D+         T  E  + LG+
Sbjct: 111 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 143

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
           K +   +WD  GQE+ R +   Y+    G+I V D  D+E     KQ  Q I  D +   
Sbjct: 80  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASE 137
Query: 95  SV-ILVFANKQDMKGA-----MTPMEVCEGLGL 121
           +V  L+  NK D+         T  E  + LG+
Sbjct: 138 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 170

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
           K +   +WD  GQE+ R +   Y+    G+I V D  D+E     KQ  Q I  D +   
Sbjct: 63  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASE 120
Query: 95  SV-ILVFANKQDMKGA-----MTPMEVCEGLGL 121
           +V  L+  NK D+         T  E  + LG+
Sbjct: 121 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 153

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
           K +   +WD  GQE+ R +   Y+    G+I V D  D+E     KQ  Q I  D +   
Sbjct: 72  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASE 129
Query: 95  SV-ILVFANKQDMKGA-----MTPMEVCEGLGL 121
           +V  L+  NK D+         T  E  + LG+
Sbjct: 130 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 162

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
           K +   +WD  GQE+ R +   Y+    G+I V D  D+E     KQ  Q I  D +   
Sbjct: 63  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASE 120
Query: 95  SV-ILVFANKQDMKGA-----MTPMEVCEGLGL 121
           +V  L+  NK D+         T  E  + LG+
Sbjct: 121 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 153

>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVG Q   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 190 FKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285

>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DV GQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 191 FKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 250
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 251 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 286

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
           K +   +WD  GQE+ R +   Y+    G+I V D  D+E     KQ  Q I  D +   
Sbjct: 45  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASE 102
Query: 95  SV-ILVFANKQDM 106
           +V  L+  NK D+
Sbjct: 103 NVNKLLVGNKCDL 115

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           K +   +WD  GQE+ R +   Y+    G+I V D  D+E     KQ  Q I
Sbjct: 55  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 106

>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The Mechanism Of Gtp Hydrolysis Length = 353

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGG    R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 190 FKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 250 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285

>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DV GQ   R  W H F     +I+ V   D +          R+ ++ + F
Sbjct: 191 FKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 250
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  +    ++ I++F NK+D+   K   +P+ +C
Sbjct: 251 DSICNNKCFTDTSIILFLNKKDLFEEKIKKSPLTIC 286

>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg Length = 380

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 31  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS-----LDRE-----RIGKAK 80
           K Q   V F ++DVGGQ   R  W   FN+   +I+VV S     + RE     R+ +A 
Sbjct: 197 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL 256
Query: 81  QEFQAIIKDPFMLNSVILVFANKQDM 106
             F++I  + ++    +++F NKQD+
Sbjct: 257 NLFKSIWNNRWLRTISVILFLNKQDL 282

>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase Length = 402

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 31  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS-----LDRE-----RIGKAK 80
           K Q   V F ++DVGGQ   R  W   FN+   +I+VV S     + RE     R+ +A 
Sbjct: 211 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL 270
Query: 81  QEFQAIIKDPFMLNSVILVFANKQDM 106
             F++I  + ++    +++F NKQD+
Sbjct: 271 NLFKSIWNNRWLRTISVILFLNKQDL 296

>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 380

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 31  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS-----LDRE-----RIGKAK 80
           K Q   V F ++DVGGQ   R  W   FN+   +I+VV S     + RE     R+ +A 
Sbjct: 197 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL 256
Query: 81  QEFQAIIKDPFMLNSVILVFANKQDM 106
             F++I  + ++    +++F NKQD+
Sbjct: 257 NLFKSIWNNRWLRTISVILFLNKQDL 282

>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And Mg Length = 394

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 31  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS-----LDRE-----RIGKAK 80
           K Q   V F ++DVGGQ   R  W   FN+   +I+VV S     + RE     R+ +A 
Sbjct: 211 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL 270
Query: 81  QEFQAIIKDPFMLNSVILVFANKQDM 106
             F++I  + ++    +++F NKQD+
Sbjct: 271 NLFKSIWNNRWLRTISVILFLNKQDL 296

>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With Adenosine 5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn Length = 402

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 31  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS-----LDRE-----RIGKAK 80
           K Q   V F ++DVGGQ   R  W   FN+   +I+VV S     + RE     R+ +A 
Sbjct: 211 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEAL 270
Query: 81  QEFQAIIKDPFMLNSVILVFANKQDM 106
             F++I  + ++    +++F NKQD+
Sbjct: 271 NLFKSIWNNRWLRTISVILFLNKQDL 296

>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit From Entamoeba Histolytica, Ehg-Alpha-1 Length = 340

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV----------DSLDRERIGKAKQEFQ 84
           K++ F + DVGGQ   R  W  +F++ D  I+V           +  +  R+ ++   F+
Sbjct: 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFK 218
Query: 85  AIIKDPFMLNSVILVFANKQDM 106
            I  + F+  +V L+F NK D+
Sbjct: 219 DIXTNEFLKGAVKLIFLNKXDL 240

>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQEF 83
           +K++ F ++DVGGQ   R  W   F     +I+ V   D +          R+ ++ + F
Sbjct: 177 FKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTNRMHESMKLF 236
Query: 84  QAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
            +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 237 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 272

>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp Length = 362

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 33  QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL--------DRE--RIGKAKQE 82
           + KNV F + DVGGQ   R  W   F++   ++++V S         DR+  R+ ++   
Sbjct: 197 EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNI 256
Query: 83  FQAIIKDPFMLNSVILVFANKQDM 106
           F+ I+ +    N  I++F NK D+
Sbjct: 257 FETIVNNRVFSNVSIILFLNKTDL 280

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
           K V   +WD  GQE+ R +   Y+    G+I V D  D       KQ F+  + +     
Sbjct: 50  KKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKT-VNEHANDE 108
Query: 95  SVILVFANKQDMKGAMTPMEVCEGLG 120
           + +L+  NK DM+  +   +  E L 
Sbjct: 109 AQLLLVGNKSDMETRVVTADQGEALA 134

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 32  VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
           +  K V   +WD  GQE+ R +   Y+    G+I V D  D       KQ F+  + +  
Sbjct: 64  INGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT-VNEHA 122
Query: 92  MLNSVILVFANKQDMKGAMTPMEVCEGLG 120
              + +L+  NK DM+  +   +  E L 
Sbjct: 123 NDEAQLLLVGNKSDMETRVVTADQGEALA 151

>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From Arabidopsis Thaliana Length = 354

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 38  IFTVWDVGGQEKLRPLWRHYFNNTDGLIY----------VVDSLDRERIGKAKQEFQAII 87
           ++ ++DVGGQ   R  W H F     +I+          + +   + R+ + K+ F  ++
Sbjct: 184 VYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 243
Query: 88  KDPFMLNSVILVFANKQDM---KGAMTPMEVCE 117
           K P    +  ++F NK D+   K    P+ VCE
Sbjct: 244 KQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCE 276

>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp-Alf4 Length = 338

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 33  QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL--------DRE--RIGKAKQE 82
           + KNV F + DVGGQ   R  W   F++   ++++V S         DR+  R+ ++   
Sbjct: 173 EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNI 232
Query: 83  FQAIIKDPFMLNSVILVFANKQDM 106
           F+ I+ +    N  I++F NK D+
Sbjct: 233 FETIVNNRVFSNVSIILFLNKTDL 256

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 32  VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
           +  K V   +WD  GQE+ R +   Y+    G+I V D  D       KQ F+  + +  
Sbjct: 51  INGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT-VNEHA 109
Query: 92  MLNSVILVFANKQDMKGAMTPMEVCEGLG 120
              + +L+  NK DM+  +   +  E L 
Sbjct: 110 NDEAQLLLVGNKSDMETRVVTADQGEALA 138

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	169
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	6e-80
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-78
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	2e-77
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	7e-76
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	1e-75
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	1e-75
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	4e-75
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	2e-74
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	2e-74
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-74
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	3e-74
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	4e-74
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	5e-74
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	1e-72
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	5e-72
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-52
2fh5_B	214	SR-beta, signal recognition particle receptor beta	4e-49
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	3e-47
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	1e-38
1nrj_B	218	SR-beta, signal recognition particle receptor beta	2e-37
2ged_A	193	SR-beta, signal recognition particle receptor beta	7e-37
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-20
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-18
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	5e-10
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	1e-07
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	3e-07
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	1e-06
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	2e-06
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	3e-06
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	4e-05
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-04
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	3e-04
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	5e-04
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	6e-04
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	8e-04
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	8e-04

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score =  234 bits (599), Expect = 6e-80
 Identities = 39/132 (29%), Positives = 68/132 (51%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           FN+ K+   NV   +WD+GGQ + R +W  Y      ++Y+VD+ D+E+I  +K E   +
Sbjct: 57  FNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNL 116

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           +  P +    +LV  NK+D+ GA+   E+ E + L  +++R+         + D +   L
Sbjct: 117 LDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL 176

Query: 147 DWLASTLKEMRA 158
            WL    K  R+
Sbjct: 177 QWLIQHSKSRRS 188

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score =  232 bits (594), Expect = 2e-77
 Identities = 76/131 (58%), Positives = 102/131 (77%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           FNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   +
Sbjct: 199 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 258

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           + +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGL
Sbjct: 259 LAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 318

Query: 147 DWLASTLKEMR 157
           DWL++ L+  +
Sbjct: 319 DWLSNQLRNQK 329

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score =  223 bits (570), Expect = 7e-76
 Identities = 69/131 (52%), Positives = 92/131 (70%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           FNVE V YKN+ F VWD+GG   +RP WR Y++NTD +IYVVDS DR+RIG +K E  A+
Sbjct: 41  FNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAM 100

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           +++  +  ++++VFANKQDM+ AMT  E+   LGL  LK+RKW I  T A KG GL E +
Sbjct: 101 LEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 160

Query: 147 DWLASTLKEMR 157
           +WL  TLK  +
Sbjct: 161 EWLVETLKSRQ 171

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score =  222 bits (568), Expect = 1e-75
 Identities = 76/131 (58%), Positives = 102/131 (77%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           FNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   +
Sbjct: 34  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 93

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           + +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGL
Sbjct: 94  LAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153

Query: 147 DWLASTLKEMR 157
           DWL++ L+  +
Sbjct: 154 DWLSNQLRNQK 164

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score =  222 bits (569), Expect = 1e-75
 Identities = 54/131 (41%), Positives = 82/131 (62%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           FN++ VQ +     VWD+GGQ K+RP WR YF NTD LIYV+DS DR+R  +  QE   +
Sbjct: 50  FNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTEL 109

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           +++  +    +L+FANKQD+  A    E+ EGL L  +++R W IQ   AL G+G+ +G+
Sbjct: 110 LEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM 169

Query: 147 DWLASTLKEMR 157
           +W+   +   +
Sbjct: 170 NWVCKNVNAKK 180

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score =  222 bits (567), Expect = 4e-75
 Identities = 63/134 (47%), Positives = 89/134 (66%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
            N+E +QYKN+ F VWD+GGQ  +RP WR YF++TD +IYVVDS DR+R+G AK E  A+
Sbjct: 56  VNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYAL 115

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           + +  +  S++L+FANKQD+  A +  E+ E LG+  + NR W I  + +  GDGL EG+
Sbjct: 116 LDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGM 175

Query: 147 DWLASTLKEMRAAG 160
           DWL   L+E     
Sbjct: 176 DWLVERLREQGLGA 189

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score =  220 bits (562), Expect = 2e-74
 Identities = 57/127 (44%), Positives = 82/127 (64%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
            NVE++   N  F +WD+GGQE LR  W  Y+ NT+ +I VVDS DRERI   ++E   +
Sbjct: 55  SNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM 114

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           +    +  + +L+FANKQD+K  MT  E+ + L L  +K+ +WHIQ  CAL G+GL +GL
Sbjct: 115 LAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174

Query: 147 DWLASTL 153
           +W+ S L
Sbjct: 175 EWMMSRL 181

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score =  220 bits (562), Expect = 2e-74
 Identities = 51/133 (38%), Positives = 87/133 (65%), Gaps = 2/133 (1%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           F++EK +  ++ FTV+D+ GQ + R LW HY+     +I+V+DS DR R+  AK+E   +
Sbjct: 57  FSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTL 116

Query: 87  IKDPFMLNS--VILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
           +  P + +    IL FANK D++ A+T ++V + L L ++K++ WHI  + A+KG+GL E
Sbjct: 117 LNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQE 176

Query: 145 GLDWLASTLKEMR 157
           G+DWL   ++ ++
Sbjct: 177 GVDWLQDQIQTVK 189

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score =  220 bits (562), Expect = 2e-74
 Identities = 74/131 (56%), Positives = 101/131 (77%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ ++  E Q
Sbjct: 61  IGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQ 120

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            ++++  + ++V+LVFANKQDM  AM   E+ + LGL  L++R W++Q TCA +G GLY+
Sbjct: 121 KMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYD 180

Query: 145 GLDWLASTLKE 155
           GLDWL+  L +
Sbjct: 181 GLDWLSHELSK 191

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score =  219 bits (561), Expect = 3e-74
 Identities = 51/128 (39%), Positives = 85/128 (66%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           FN++ ++++     +WDVGGQ+ LR  WR+YF +TDGLI+VVDS DR+R+   ++E Q++
Sbjct: 52  FNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 111

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           + +  +  + +L+FANKQD+ GA++   + E L L  +++  W IQG  A+ G+ L  G+
Sbjct: 112 LVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI 171

Query: 147 DWLASTLK 154
           DWL   + 
Sbjct: 172 DWLLDDIS 179

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score =  219 bits (560), Expect = 4e-74
 Identities = 58/129 (44%), Positives = 83/129 (64%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
            NVE++   N  F +WD+GGQE LR  W  Y+ NT+ +I VVDS DRERI   ++E   +
Sbjct: 50  SNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM 109

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           +    +  + +L+FANKQD+K  MT  E+ + L L  +K+ +WHIQ  CAL G+GL +GL
Sbjct: 110 LAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 169

Query: 147 DWLASTLKE 155
           +W+ S LK 
Sbjct: 170 EWMMSRLKI 178

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score =  219 bits (560), Expect = 5e-74
 Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 7/134 (5%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
              E++   N+ FT +D+GG  + R LW+ YF   +G++++VD+ D ER  +A+ E  A+
Sbjct: 57  PTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDAL 116

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKN-------RKWHIQGTCALKG 139
                + +   ++  NK D   A++  E+   LGL +          R   +     +  
Sbjct: 117 FNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR 176

Query: 140 DGLYEGLDWLASTL 153
           +G  E   WL+  +
Sbjct: 177 NGYLEAFQWLSQYI 190

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score =  215 bits (550), Expect = 1e-72
 Identities = 59/133 (44%), Positives = 91/133 (68%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FNVE + YKN+   VWD+GGQ  +RP WR Y+ +T  +I+VVDS D++R+  A +E  
Sbjct: 50  IGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELH 109

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            ++++  + ++ +LVFANKQD  GA++  EV + L L +LK+R W I  + A+KG+G+ E
Sbjct: 110 LMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITE 169

Query: 145 GLDWLASTLKEMR 157
           GLDWL   +KE +
Sbjct: 170 GLDWLIDVIKEEQ 182

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score =  214 bits (547), Expect = 5e-72
 Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 12/139 (8%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
              E++    + FT +D+GG  + R +W++Y    +G++++VD  D ER+ ++K+E  ++
Sbjct: 59  PTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSL 118

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGT 134
           + D  + N  IL+  NK D   A++   + E  GL+            +L  R   +   
Sbjct: 119 MTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMC 178

Query: 135 CALKGDGLYEGLDWLASTL 153
             LK  G  EG  W+A  +
Sbjct: 179 SVLKRQGYGEGFRWMAQYI 197

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score =  164 bits (418), Expect = 1e-52
 Identities = 27/146 (18%), Positives = 60/146 (41%), Gaps = 10/146 (6%)

Query: 20  LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKA 79
           LF   +  ++ +V+     F ++ V GQ       +      DG+++V DS    R+   
Sbjct: 57  LFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADS-APNRLRAN 115

Query: 80  KQEFQAIIKD-----PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGT 134
            +  + + ++       + +  I++  NK+D+  A+    V   +        K+ +   
Sbjct: 116 AESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP----EGKFPVLEA 171

Query: 135 CALKGDGLYEGLDWLASTLKEMRAAG 160
            A +G G++E L  ++  +    A G
Sbjct: 172 VATEGKGVFETLKEVSRLVLARVAGG 197

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score =  156 bits (397), Expect = 4e-49
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 9/140 (6%)

Query: 25  VRFNVEKVQYKN---VIFTVWDVGGQEKLRP-LWRHYFNNTDGLIYVVDSLDRERIGKAK 80
           +  +    +  N      T+ D+ G E LR  L   + ++   +++VVDS   +R  K  
Sbjct: 39  ITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDV 98

Query: 81  QEF--QAIIKDPFMLNSV-ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL 137
            EF  Q +I    + NS  +L+  NKQD+  A +   + + L       R          
Sbjct: 99  AEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPST- 157

Query: 138 KGDGLYEGLDWLASTLKEMR 157
             D        L    KE  
Sbjct: 158 -LDSSSTAPAQLGKKGKEFE 176

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227

 Score =  152 bits (385), Expect = 3e-47
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 5/129 (3%)

Query: 34  YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER--IGKAKQEFQAIIKDPF 91
           +          G +  + P  +      DG IYV ++   +R           A+    F
Sbjct: 99  FSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAF 158

Query: 92  MLNS--VILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL 149
             +   ++++    Q     M    +   L L  L N  W +Q T A    G   G++W+
Sbjct: 159 GSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWI 217

Query: 150 ASTLKEMRA 158
              ++  RA
Sbjct: 218 LEEVESKRA 226

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score =  132 bits (334), Expect = 1e-38
 Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 5/120 (4%)

Query: 43  DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER--IGKAKQEFQAII-KDPFMLNSVILV 99
             G +  + P  +      DG IYV ++   +R           A+           +LV
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252

Query: 100 FA-NKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMRA 158
            +   Q     M    +   L L  L N  W +Q T A    G   G++W+   ++  RA
Sbjct: 253 LSCISQGDVKRMPCFYLAHELHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKRA 311

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score =  127 bits (320), Expect = 2e-37
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 10/132 (7%)

Query: 28  NVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNN----TDGLIYVVDSL-DRERIGKAKQE 82
            +    Y     T+ D  G  KLR     Y         GLI++VDS  D +++    + 
Sbjct: 46  PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEF 105

Query: 83  FQAIIKDP--FMLNSV-ILVFANKQDMKGAMTPMEVCEGLG--LFDLKNRKWHIQGTCAL 137
              I+        N + IL+  NK ++  A  P ++ + L   +  +  R+         
Sbjct: 106 LVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVER 165

Query: 138 KGDGLYEGLDWL 149
           K +      + L
Sbjct: 166 KINEEDYAENTL 177

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score =  124 bits (314), Expect = 7e-37
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 28  NVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNN----TDGLIYVVDSL-DRERIGKAKQE 82
            +    Y     T+ D  G  KLR     Y         GLI++VDS  D +++    + 
Sbjct: 82  PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEF 141

Query: 83  FQAIIKDP--FMLNSV-ILVFANKQDMKGAMTPMEVCEGLG--LFDLKNRK 128
              I+        N + IL+  NK ++  A  P ++ + L   +  +  R+
Sbjct: 142 LVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR 192

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 83.1 bits (205), Expect = 1e-20
 Identities = 23/121 (19%), Positives = 36/121 (29%), Gaps = 16/121 (13%)

Query: 25  VRFNVEKVQYK-NVIFTVWDVGGQEKLRPLW---RHYFNNTDGLIYVVDSLDRERIGKAK 80
            +   + +     V F +WD  GQ             F  T  LIYV+D+ D      A 
Sbjct: 56  NKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYME--AL 113

Query: 81  QEFQAIIKDPFMLNS--VILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALK 138
                 +   + +N      VF +K D       +E          ++         A  
Sbjct: 114 TRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIET--------QRDIHQRANDDLADA 165

Query: 139 G 139
           G
Sbjct: 166 G 166

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 79.3 bits (195), Expect = 2e-18
 Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 16/143 (11%)

Query: 25  VRFNVEKVQY-KNVIFTVWDVGGQEK-----LRPLWRHYFNNTDGLIYVVDSLDRERIGK 78
           +      +++  N+   +WD GGQ+            H F     LI+V D    E + K
Sbjct: 39  IDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVL-K 97

Query: 79  AKQEFQAIIKDPFMLNS--VILVFANKQDMKGAMTPMEVCEGL------GLFDLKNRKWH 130
             + F   +K     +    I V  +K D+       E+ + +         +       
Sbjct: 98  DIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLI 157

Query: 131 IQGTCALKGDGLYEGLDWLASTL 153
              T     + LY+    +  +L
Sbjct: 158 GFPTSIWD-ESLYKAWSQIVCSL 179

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 56.2 bits (135), Expect = 5e-10
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 8/84 (9%)

Query: 28  NVEKVQYKNVI-FTVWDVGGQEKLRPLW---RHYFNNTDGLIYVVDSLDRERIGKAKQEF 83
           N     +  +I   V ++ GQ             F +   L+YV+DS D      A    
Sbjct: 36  NPSLEHFSTLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYI--NAITNL 93

Query: 84  QAIIKDPFMLNS--VILVFANKQD 105
             II+  + +N    I V  +K D
Sbjct: 94  AMIIEYAYKVNPSINIEVLIHKVD 117

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362

 Score = 48.9 bits (116), Expect = 1e-07
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 33  QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RIGKAKQE 82
           + KNV F + DVGGQ   R  W   F++   ++++V S + +          R+ ++   
Sbjct: 197 EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNI 256

Query: 83  FQAIIKDPFMLNSVILVFANKQDM 106
           F+ I+ +    N  I++F NK D+
Sbjct: 257 FETIVNNRVFSNVSIILFLNKTDL 280

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402

 Score = 48.3 bits (114), Expect = 3e-07
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 10/84 (11%)

Query: 33  QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQE 82
           Q   V F ++DVGGQ   R  W   FN+   +I+VV S              R+ +A   
Sbjct: 213 QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNL 272

Query: 83  FQAIIKDPFMLNSVILVFANKQDM 106
           F++I  + ++    +++F NKQD+
Sbjct: 273 FKSIWNNRWLRTISVILFLNKQDL 296

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 13/97 (13%)

Query: 33  QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV----------DSLDRERIGKAKQE 82
            +K++ F ++DVGGQ   R  W H F     +I+ V          +  +  R+ ++ + 
Sbjct: 189 TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKL 248

Query: 83  FQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVC 116
           F +I  + +  ++ I++F NK+D+   K   +P+ +C
Sbjct: 249 FDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC 285

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354

 Score = 45.5 bits (107), Expect = 2e-06
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 14/107 (13%)

Query: 25  VRFNVEKV-QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE--------- 74
           ++F+     +    ++ ++DVGGQ   R  W H F     +I+     + +         
Sbjct: 170 IQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQK 229

Query: 75  -RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM---KGAMTPMEVCE 117
            R+ + K+ F  ++K P    +  ++F NK D+   K    P+ VCE
Sbjct: 230 NRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCE 276

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 10/84 (11%)

Query: 33  QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV----------DSLDRERIGKAKQE 82
             ++VIF + DVGGQ   R  W H F N   ++++V          +S +  R+ ++K  
Sbjct: 163 DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKAL 222

Query: 83  FQAIIKDPFMLNSVILVFANKQDM 106
           F+ II  P+  NS +++F NK+D+
Sbjct: 223 FRTIITYPWFQNSSVILFLNKKDL 246

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 41.9 bits (98), Expect = 4e-05
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 5/92 (5%)

Query: 15  VKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE 74
           +         ++      + K  +F  WD GGQE +    + +   +   + ++DS    
Sbjct: 76  LNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDS 135

Query: 75  RIGKAKQEFQAIIKDPFMLNSVILVFANKQDM 106
                 +  +          S ++V  NK D 
Sbjct: 136 NKHYWLRHIEKYGG-----KSPVIVVMNKIDE 162

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 1/121 (0%)

Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
             V F +WD  GQE+   L   Y+ N    + V D    +   KA+   +  + +    +
Sbjct: 50  HTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKD 108

Query: 95  SVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 154
            +I +  NK D        +V    G    + +      T A  G+ + +    +   + 
Sbjct: 109 IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168

Query: 155 E 155
            
Sbjct: 169 L 169

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 32  VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
                + F VWD  GQEK   L   Y+      I + D   R          + +++   
Sbjct: 59  TNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC- 117

Query: 92  MLNSVILVFANKQDMK 107
             N  I++  NK D+K
Sbjct: 118 -ENIPIVLCGNKVDIK 132

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPF 91
           + V   +WD  GQE+ + L   ++   D  + V D       + +   + EF        
Sbjct: 55  RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 114

Query: 92  MLNSVILVFANKQDM 106
             N   +V  NK D+
Sbjct: 115 PENFPFVVLGNKIDL 129

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 26  RFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQA 85
           + N       N+ F +WD  GQE+   +   Y+      I V D  +   + +AK     
Sbjct: 82  QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQ 141

Query: 86  IIKDPFMLNSVILVFANKQDM 106
           +       N +I++ ANK D 
Sbjct: 142 LKISS---NYIIILVANKIDK 159

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 13/86 (15%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
             +   + ++++  VWD  G+E+      H+       + V D      + K + E  A+
Sbjct: 46  IQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYD------LSKGQAEVDAM 99

Query: 87  ------IKDPFMLNSVILVFANKQDM 106
                 IK     +S +++     D+
Sbjct: 100 KPWLFNIKA-RASSSPVILVGTHLDV 124

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR---ERIGKAKQEFQAIIKDPF 91
           K     VWD  GQE+ + L   ++   D  + V D  +    E I   + EF        
Sbjct: 56  KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNS 115

Query: 92  MLNSVILVFANKQDMKGA 109
                 ++  NK D + +
Sbjct: 116 PETFPFVILGNKIDAEES 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	169
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	100.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	100.0
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	100.0
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	100.0
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	100.0
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	100.0
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	100.0
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	100.0
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	100.0
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	100.0
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.98
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.97
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.97
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.97
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.96
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.96
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.96
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.96
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.96
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.96
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.96
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.96
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.96
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.96
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.96
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.96
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.96
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.96
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.96
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.96
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.96
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.96
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.96
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.96
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.96
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.96
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.96
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.96
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.96
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.96
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.96
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.96
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.96
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.96
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.96
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.96
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.96
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.96
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.95
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.95
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.95
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.95
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.95
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.95
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.95
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.95
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.95
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.95
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.95
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.95
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.95
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.95
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.95
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.95
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.95
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.95
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.95
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.95
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.95
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.95
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.95
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.95
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.95
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.95
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.95
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.95
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.95
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.95
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.95
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.95
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.95
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.95
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.95
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.95
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.95
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.94
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.94
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.94
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.94
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.94
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.94
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.89
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.93
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.93
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.93
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.92
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.92
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.92
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.92
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.91
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.9
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.9
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.9
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.9
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.9
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.9
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.89
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.89
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.89
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.89
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.89
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.89
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.88
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.87
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.87
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.87
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.87
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.87
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.87
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.87
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.87
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.87
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.87
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.86
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.86
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.86
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.86
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.86
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.85
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.85
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.84
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.84
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.83
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.83
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.83
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.83
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.82
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.82
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.82
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.82
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.82
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.81
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.81
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.8
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.8
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.8
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.8
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.8
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.8
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.8
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.79
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.79
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.78
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.78
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.78
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.78
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.78
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.77
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.77
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.75
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.75
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.75
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.74
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.74
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.74
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.74
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.73
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.73
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.72
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.72
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.71
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.71
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.7
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.7
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.7
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.67
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.63
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.61
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.58
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.58
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.57
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.53
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.52
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.52
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.51
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.5
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.47
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.47
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.47
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.47
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.46
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.43
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.4
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.39
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.38
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.35
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.33
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.28
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.27
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.27
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.26
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.2
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.2
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.15
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.08
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.88
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.64
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.43
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.24
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.18
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.13
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.85
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.83
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.7
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.66
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.48
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.98
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.94
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.89
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.84
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.63
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.28
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	95.66
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.04
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.01
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	94.83
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.22
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	94.04
3end_A	307	Light-independent protochlorophyllide reductase ir	93.94
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	93.24
3cwq_A	209	Para family chromosome partitioning protein; alpha	92.29
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	91.71
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	91.69
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	90.74
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	90.08
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	90.06
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	89.58
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	89.44
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	88.96
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	88.77
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	88.55
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	88.54
1sgw_A	214	Putative ABC transporter; structural genomics, P p	88.54
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	88.29
1g6h_A	257	High-affinity branched-chain amino acid transport	88.19
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	88.18
1ji0_A	240	ABC transporter; ATP binding protein, structural g	88.09
1b0u_A	262	Histidine permease; ABC transporter, transport pro	88.07
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	88.07
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	88.02
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	87.68
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	87.64
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	87.45
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	87.43
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	87.37
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	87.36
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	87.25
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	87.25
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	87.1
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	86.92
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	86.91
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	86.81
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	86.75
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	86.67
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	86.49
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	86.13
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	86.03
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	85.89
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	85.8
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	85.64
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	85.1
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	84.98
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	84.85
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	84.55
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	84.26
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	84.05
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	84.01
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	83.87
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	83.03
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	82.87
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	82.84
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	82.75
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	82.75
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	82.66
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	82.35
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	82.33
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	82.32
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	82.25
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	82.11
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	82.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	81.97
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	81.84
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	81.51
2xxa_A	433	Signal recognition particle protein; protein trans	81.45
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	81.44
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	81.43
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	81.29
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	81.24
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	81.16
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	81.14
3co5_A	143	Putative two-component system transcriptional RES	80.7
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	80.7
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	80.68
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	80.6
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	80.51
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	80.34
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	80.22

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=100.00  E-value=5.1e-34  Score=195.47  Aligned_cols=155  Identities=36%  Similarity=0.667  Sum_probs=133.1

Q ss_pred             ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+|+|||||++++.    ..+.||.|+....+..+++.+++|||||++.+...+..+++.+|++++|||+++++++.
T Consensus        21 ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~  100 (181)
T 1fzq_A           21 LLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE  100 (181)
T ss_dssp             EEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHH
Confidence            56789999999999873    34688999888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      .+..|+..+++.....+.|+++|+||+|+.+....+++.+.++.......++++++|||++|+|++++|+++.+.+.++
T Consensus       101 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  179 (181)
T 1fzq_A          101 ETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK  179 (181)
T ss_dssp             HHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHhc
Confidence            9999999887654456899999999999987766677777666554456678899999999999999999999877554

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=8.4e-36  Score=209.60  Aligned_cols=150  Identities=15%  Similarity=0.237  Sum_probs=112.8

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +|++.+|+|||||++||     .+.+.||++.++..  +..  ..++++||||+|+++|..+++.++++++++++|||++
T Consensus        17 vlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~   96 (216)
T 4dkx_A           17 VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDIT   96 (216)
T ss_dssp             EEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETT
T ss_pred             EEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecc
Confidence            36789999999999976     67788999976543  333  5689999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++++|+.+..|+..+.... .+++|+++||||+|+.+.  ++.++... +    +...+++|++|||++|.||+++|++|
T Consensus        97 ~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~-~----a~~~~~~~~e~SAktg~nV~e~F~~i  170 (216)
T 4dkx_A           97 NVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGER-K----AKELNVMFIETSAKAGYNVKQLFRRV  170 (216)
T ss_dssp             CHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhh-H----HHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence            9999999999999886532 257999999999999653  33333221 1    12345679999999999999999999


Q ss_pred             HHHHHhh
Q 030931          150 ASTLKEM  156 (169)
Q Consensus       150 ~~~~~~~  156 (169)
                      ++.+...
T Consensus       171 ~~~i~~~  177 (216)
T 4dkx_A          171 AAALPGM  177 (216)
T ss_dssp             HHHC---
T ss_pred             HHHHHhh
Confidence            9887654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=100.00  E-value=4.9e-34  Score=192.02  Aligned_cols=155  Identities=50%  Similarity=0.916  Sum_probs=133.8

Q ss_pred             ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+|+|||||++++    ...+.||+++....+..+++.+++|||||++.+..++..+++++|++++|||+++++++.
T Consensus         5 ~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~   84 (164)
T 1r8s_A            5 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN   84 (164)
T ss_dssp             EECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHH
T ss_pred             EECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHH
Confidence            5778999999999987    234678999888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      ....|+..++......+.|+++|+||+|+.+....+++...++.......+++++++||++|.|++++|+++.+.+.++
T Consensus        85 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  163 (164)
T 1r8s_A           85 EAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ  163 (164)
T ss_dssp             HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhhc
Confidence            9999999987755556899999999999987766677777776655566678899999999999999999999877543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=100.00  E-value=3e-33  Score=189.22  Aligned_cols=155  Identities=45%  Similarity=0.771  Sum_probs=136.2

Q ss_pred             ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+|+|||||++++    ...+.||.+.....+.++...+.+|||||++.+...+..+++.+|++++|+|++++.++.
T Consensus        12 v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~   91 (171)
T 1upt_A           12 ILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIG   91 (171)
T ss_dssp             EECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHH
Confidence            5678999999999987    235678889888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      ....|+..++......+.|+++|+||+|+.+....+++...++.......+++++++||++|.|++++|+++.+.+.++
T Consensus        92 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  170 (171)
T 1upt_A           92 ISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR  170 (171)
T ss_dssp             HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhhc
Confidence            9999999887764446899999999999987766777777776555566778999999999999999999999988654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=100.00  E-value=3.1e-33  Score=193.31  Aligned_cols=154  Identities=49%  Similarity=0.888  Sum_probs=130.3

Q ss_pred             ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+++|||||++++.    ..+.||+++....++.+++.+.+|||||++++..++..+++.+|++++|||++++++++
T Consensus        34 v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~  113 (192)
T 2b6h_A           34 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQ  113 (192)
T ss_dssp             EEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHH
T ss_pred             EECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHH
Confidence            56789999999999872    35678889888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE  155 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  155 (169)
                      ....|+..++......+.|+++|+||+|+.+....+++.+.++.......+++++++||++|.|++++|+++.+.+.+
T Consensus       114 ~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          114 ESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHhc
Confidence            999999998875555689999999999998776777788777765556677889999999999999999999987643

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.9e-33  Score=193.32  Aligned_cols=159  Identities=38%  Similarity=0.625  Sum_probs=130.5

Q ss_pred             ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+++|||||++++.    ..+.||+++....+..+++.+++|||||++++..++..+++.+|++++|||++++++++
T Consensus        21 v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~  100 (187)
T 1zj6_A           21 IVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERIS  100 (187)
T ss_dssp             EEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHH
Confidence            56789999999999872    36778888888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      ....|+..+++.....+.|+++|+||+|+.+....+++.+.+........+++++++||++|.|++++|+++.+.+....
T Consensus       101 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  180 (187)
T 1zj6_A          101 VTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRL  180 (187)
T ss_dssp             HHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHHh
Confidence            99999999987543468999999999999876667777776665434556789999999999999999999999887665


Q ss_pred             ccc
Q 030931          158 AAG  160 (169)
Q Consensus       158 ~~~  160 (169)
                      ...
T Consensus       181 ~~~  183 (187)
T 1zj6_A          181 EHH  183 (187)
T ss_dssp             ---
T ss_pred             hhh
Confidence            443

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=8.7e-34  Score=196.44  Aligned_cols=158  Identities=34%  Similarity=0.504  Sum_probs=135.3

Q ss_pred             ccccCCCCCceeeeec-----ee-eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhh
Q 030931            2 LRVKQPYCTSCTLVKF-----YL-LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER   75 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~-~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~   75 (169)
                      |++.+++|||||+++|     .. .+.||+++....++...+.+++|||||++++..++..+++.+|++|+|||+++.++
T Consensus        22 v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s  101 (199)
T 4bas_A           22 MCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLR  101 (199)
T ss_dssp             EECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGG
T ss_pred             EECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHH
Confidence            6779999999999986     34 67899999888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCC-------CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC-CCceeEEEEeeeccCCCHHHHHH
Q 030931           76 IGKAKQEFQAIIKDPFM-------LNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus        76 ~~~~~~~~~~~~~~~~~-------~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                      |..+..|+..+++....       .+.|+++|+||+|+.+....+++.+.++.... ...++++++|||++|.|++++|+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  181 (199)
T 4bas_A          102 LCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFS  181 (199)
T ss_dssp             HHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHH
T ss_pred             HHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHH
Confidence            99999999988764221       27899999999999887777777777764433 45678899999999999999999


Q ss_pred             HHHHHHHhhhcc
Q 030931          148 WLASTLKEMRAA  159 (169)
Q Consensus       148 ~l~~~~~~~~~~  159 (169)
                      ++.+.+.+....
T Consensus       182 ~l~~~~~~~~~~  193 (199)
T 4bas_A          182 WLQETASRQSGK  193 (199)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHHhcc
Confidence            999998877543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=100.00  E-value=8.9e-33  Score=189.67  Aligned_cols=155  Identities=35%  Similarity=0.677  Sum_probs=135.8

Q ss_pred             ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+++|||||++++    ...+.||.+.....+..+++.+++|||||++++...+..+++.+|++++|+|++++.+++
T Consensus        23 v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~  102 (186)
T 1ksh_A           23 MLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQ  102 (186)
T ss_dssp             EECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHH
Confidence            5678999999999987    356778999888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      .+..|+..+++.....+.|+++|+||+|+.+....+++.+.+........+++++++||++|.|++++|+++.+.+.+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          103 DCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            9999999987764456899999999999987767777777666544456678999999999999999999999988765

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=100.00  E-value=4.6e-33  Score=191.71  Aligned_cols=155  Identities=26%  Similarity=0.477  Sum_probs=134.0

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI   76 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~   76 (169)
                      |++.+++|||||+++|     ...+.||++.++..+..+.+.+.+|||||++++..++..+++.+|++++|||+++++++
T Consensus        27 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~  106 (188)
T 1zd9_A           27 LVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI  106 (188)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGH
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHH
Confidence            5678999999999976     45678999999888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931           77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      ..+..|+..+++.....+.|+++|+||+|+.+....+++.+.++.......+++++++||++|.|++++|+++.+.+.+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          107 EASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSR  186 (188)
T ss_dssp             HHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            99999999987754446899999999999987666677777666554555678899999999999999999999876543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=100.00  E-value=9.3e-33  Score=190.10  Aligned_cols=156  Identities=42%  Similarity=0.751  Sum_probs=136.4

Q ss_pred             ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+++|||||++++.    ..+.||+++....+..+++.+.+|||||++.+...+..+++.+|++++|+|+++++++.
T Consensus        27 v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~  106 (189)
T 2x77_A           27 MLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMG  106 (189)
T ss_dssp             EEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHH
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHH
Confidence            56789999999999872    34678888888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      ....|+..++......+.|+++|+||+|+.+....+++.+.++.......+++++++||++|.|++++|+++.+.+.+.+
T Consensus       107 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  186 (189)
T 2x77_A          107 VAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQG  186 (189)
T ss_dssp             HHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhcc
Confidence            99999999887655568999999999999877666777777765555666789999999999999999999999887653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.8e-32  Score=187.54  Aligned_cols=156  Identities=38%  Similarity=0.740  Sum_probs=132.6

Q ss_pred             ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+|+|||||++++.    ..+.||+++....+.+++..+.+|||||++.+...+..+++.+|++++|+|++++.+++
T Consensus        23 v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~  102 (183)
T 1moz_A           23 ILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMS  102 (183)
T ss_dssp             EEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHH
T ss_pred             EECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHH
Confidence            56789999999999873    46678888888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      ....|+..+++.....+.|+++|+||+|+.+....+++.+.++.......+++++++||++|.|++++|+++.+.+.+++
T Consensus       103 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~q  182 (183)
T 1moz_A          103 TASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ  182 (183)
T ss_dssp             HHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhcc
Confidence            99999999877554568999999999999877677778777766555566789999999999999999999999887653

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=100.00  E-value=1.2e-32  Score=188.46  Aligned_cols=151  Identities=38%  Similarity=0.661  Sum_probs=131.9

Q ss_pred             ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+++|||||+++|.    ..+.||.+.....+..+++.+.+|||||++++..++..+++.+|++++|||+++..++.
T Consensus        26 v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~  105 (181)
T 2h17_A           26 IVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERIS  105 (181)
T ss_dssp             EEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHH
Confidence            56789999999999873    56778888888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      .+..|+..+++.....+.|+++|+||+|+.+....+++.+.+........+++++++||++|.|++++|+++.+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          106 VTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence            999999998775434689999999999998776777777776655555667899999999999999999999753

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=100.00  E-value=2.3e-32  Score=188.66  Aligned_cols=151  Identities=23%  Similarity=0.411  Sum_probs=129.5

Q ss_pred             ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+|+|||||++++.    ..+.||.+.....+..+++.+++|||||++.++.++..+++.+|++++|||++++++|+
T Consensus        28 ~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~  107 (190)
T 1m2o_B           28 FLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFD  107 (190)
T ss_dssp             EEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHH
Confidence            56789999999999873    35678888888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCC-------CCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD-------LKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      .+..|+..+++.....+.|+++|+||+|+.+..+.+++.+.+....       ....++++++|||++|+|++++|+++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  187 (190)
T 1m2o_B          108 EARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS  187 (190)
T ss_dssp             HHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred             HHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHH
Confidence            9999999987754446899999999999987667777776655332       223567899999999999999999997


Q ss_pred             HH
Q 030931          151 ST  152 (169)
Q Consensus       151 ~~  152 (169)
                      +.
T Consensus       188 ~~  189 (190)
T 1m2o_B          188 QY  189 (190)
T ss_dssp             TT
T ss_pred             hh
Confidence            53

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.5e-32  Score=186.43  Aligned_cols=154  Identities=34%  Similarity=0.618  Sum_probs=131.9

Q ss_pred             ccccCCCCCceeeeec------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhh
Q 030931            2 LRVKQPYCTSCTLVKF------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER   75 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~   75 (169)
                      +++.+|+|||||+++|      ...+.||.++....+..+++.+.+|||||++.+...+..+++.+|++++|||+++..+
T Consensus        26 v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s  105 (190)
T 2h57_A           26 CLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLR  105 (190)
T ss_dssp             EEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHH
Confidence            5778999999999976      3456789998888888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCC--CCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931           76 IGKAKQEFQAIIKDPFM--LNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus        76 ~~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                      +..+..|+..++.....  .+.|+++|+||+|+.+....+++.+.+........+++++++||++|.|++++|+++.+.+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  185 (190)
T 2h57_A          106 MVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI  185 (190)
T ss_dssp             HHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence            99999999998775444  5899999999999987767777776665443445578899999999999999999999876


Q ss_pred             Hh
Q 030931          154 KE  155 (169)
Q Consensus       154 ~~  155 (169)
                      .+
T Consensus       186 ~~  187 (190)
T 2h57_A          186 QT  187 (190)
T ss_dssp             --
T ss_pred             HH
Confidence            54

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.98  E-value=1.9e-32  Score=190.26  Aligned_cols=151  Identities=25%  Similarity=0.448  Sum_probs=122.4

Q ss_pred             ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+|+|||||++++.    ..+.||++.+...+..+++.+++|||||++.++.++..+++++|++++|||++++++|.
T Consensus        30 lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~  109 (198)
T 1f6b_A           30 FLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLL  109 (198)
T ss_dssp             EEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHH
Confidence            56789999999999884    35678888877888888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCC---------C---CCceeEEEEeeeccCCCHHHH
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD---------L---KNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      .+..|+..+++.....+.|+++|+||+|+.+..+.+++.+.+....         +   ....+++++|||++|+|++++
T Consensus       110 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l  189 (198)
T 1f6b_A          110 ESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG  189 (198)
T ss_dssp             HHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHH
T ss_pred             HHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHH
Confidence            9999999988754456899999999999987667777766554321         1   125678999999999999999


Q ss_pred             HHHHHHH
Q 030931          146 LDWLAST  152 (169)
Q Consensus       146 ~~~l~~~  152 (169)
                      |+++.+.
T Consensus       190 ~~~l~~~  196 (198)
T 1f6b_A          190 FRWMAQY  196 (198)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            9999764

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.97  E-value=3.1e-31  Score=197.11  Aligned_cols=155  Identities=50%  Similarity=0.913  Sum_probs=133.4

Q ss_pred             ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      |++.+++|||||+++|.    ....||++..+..++..++.++||||||++.+..++..+++.+|++|+|||++++.+|.
T Consensus       170 ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~  249 (329)
T 3o47_A          170 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVN  249 (329)
T ss_dssp             EEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHH
T ss_pred             EECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHH
Confidence            56789999999999872    34458999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      .+..|+..++......++|+++|+||+|+.+....+++...++.......+++++++||++|.||+++|+++.+.+.++
T Consensus       250 ~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          250 EAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHhc
Confidence            9999998888766556899999999999988777888888888776677888999999999999999999999987654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.97  E-value=2.3e-31  Score=181.74  Aligned_cols=160  Identities=13%  Similarity=0.075  Sum_probs=121.2

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||+++|     ...+.||.+..+. .+...  .+.+++|||||++.+..++..+++.+|++++|||++++
T Consensus        11 ~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   90 (181)
T 3t5g_A           11 ILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSI   90 (181)
T ss_dssp             EEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCH
T ss_pred             EECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCH
Confidence            6779999999999976     4566677776543 23444  47889999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ++++.+..|+..+.+.....+.|+++|+||+|+.+..  ..++.....     ...+++++++||++|.|++++|+++.+
T Consensus        91 ~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~~~l~~  165 (181)
T 3t5g_A           91 KSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA-----ESWNAAFLESSAKENQTAVDVFRRIIL  165 (181)
T ss_dssp             HHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHH-----HHhCCcEEEEecCCCCCHHHHHHHHHH
Confidence            9999999999888775545689999999999986432  223322211     223457999999999999999999999


Q ss_pred             HHHhhhccccccccccC
Q 030931          152 TLKEMRAAGYSSVGTSS  168 (169)
Q Consensus       152 ~~~~~~~~~~~~~~~~s  168 (169)
                      .+.+.+.  ..+.|++|
T Consensus       166 ~~~~~~~--~~~~gkss  180 (181)
T 3t5g_A          166 EAEKMDG--ACSQGKSS  180 (181)
T ss_dssp             HHHTC-------CCBSC
T ss_pred             HHHHhcC--CcccCcCC
Confidence            9988763  34445544

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=6.1e-30  Score=176.61  Aligned_cols=150  Identities=16%  Similarity=0.135  Sum_probs=121.7

Q ss_pred             ccccCCCCCceeeeec----eee-----------eeeeeeEEEEEE-----EECCEEEEEEEcCCCCCchhhHHhhccCC
Q 030931            2 LRVKQPYCTSCTLVKF----YLL-----------FLLLVRFNVEKV-----QYKNVIFTVWDVGGQEKLRPLWRHYFNNT   61 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f----~~~-----------~~~t~~~~~~~~-----~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   61 (169)
                      |++.+++|||||++.+    ...           +.||++.++...     +...+.+++|||||++++..++..+++.+
T Consensus        19 vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   98 (198)
T 3t1o_A           19 YYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGV   98 (198)
T ss_dssp             EECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTC
T ss_pred             EECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcC
Confidence            5778999999999743    222           456888776543     23568999999999999999999999999


Q ss_pred             CEEEEEEECC------ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCcee-EEEEe
Q 030931           62 DGLIYVVDSL------DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW-HIQGT  134 (169)
Q Consensus        62 ~~ii~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  134 (169)
                      |++|+|||++      +.+++..+..|+.++.  ....+.|+++|+||+|+.+....++..+...     ..++ +++++
T Consensus        99 d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~  171 (198)
T 3t1o_A           99 DGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVD-----PEGKFPVLEA  171 (198)
T ss_dssp             CEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHC-----TTCCSCEEEC
T ss_pred             CEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHH-----hcCCceEEEE
Confidence            9999999999      5677888888888873  2346899999999999987777666655443     3345 79999


Q ss_pred             eeccCCCHHHHHHHHHHHHHhhhc
Q 030931          135 CALKGDGLYEGLDWLASTLKEMRA  158 (169)
Q Consensus       135 Sa~~~~gi~~~~~~l~~~~~~~~~  158 (169)
                      ||++|.|++++|+++.+.+.++..
T Consensus       172 Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          172 VATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             BGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             ecCCCcCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999988754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.97  E-value=5.2e-30  Score=175.32  Aligned_cols=152  Identities=16%  Similarity=0.255  Sum_probs=98.2

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+++|||||+++|     ...+.||++.++  ..+..++  +.+++|||||++.+..++..+++.+|++++|||+++
T Consensus        13 v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   92 (183)
T 2fu5_C           13 LIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITN   92 (183)
T ss_dssp             EECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTC
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcC
Confidence            5678999999999987     345667777554  3455554  899999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+++.+..|+..+.... ..+.|+++|+||+|+.+..  ..++.....     ...+++++++||++|.|++++|+++.
T Consensus        93 ~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~  166 (183)
T 2fu5_C           93 EKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLA-----LDYGIKFMETSAKANINVENAFFTLA  166 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHH-----HHHTCEEEECCC---CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999999998886532 2479999999999997532  233322211     22346799999999999999999999


Q ss_pred             HHHHhhhcc
Q 030931          151 STLKEMRAA  159 (169)
Q Consensus       151 ~~~~~~~~~  159 (169)
                      +.+.+....
T Consensus       167 ~~i~~~~~~  175 (183)
T 2fu5_C          167 RDIKAKMDK  175 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhc
Confidence            998876543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.96  E-value=1.6e-30  Score=175.08  Aligned_cols=150  Identities=14%  Similarity=0.017  Sum_probs=98.7

Q ss_pred             ccccCCCCCceeeeecee----eeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh
Q 030931            2 LRVKQPYCTSCTLVKFYL----LFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE   74 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~----~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~   74 (169)
                      +++.+|+|||||++++..    ...++.+.... .+..  ..+.+.+||++|++.+..++..+++.++++++|||+++++
T Consensus         7 ~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~   86 (166)
T 3q72_A            7 LLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG   86 (166)
T ss_dssp             EEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHH
T ss_pred             EECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHH
Confidence            577999999999998843    23344443332 2223  5678999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           75 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      +++.+..|+..+.+.....+.|+++|+||+|+.+..  ..++.. .+.    ...+++++++||++|.|++++|+++.+.
T Consensus        87 s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  161 (166)
T 3q72_A           87 SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR-ACA----VVFDCKFIETSAALHHNVQALFEGVVRQ  161 (166)
T ss_dssp             HHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHH-HHH----HHTTCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHH-HHH----HHhCCcEEEeccCCCCCHHHHHHHHHHH
Confidence            999999999998776555689999999999997532  222221 111    2234579999999999999999999998


Q ss_pred             HHhh
Q 030931          153 LKEM  156 (169)
Q Consensus       153 ~~~~  156 (169)
                      +.++
T Consensus       162 ~~~~  165 (166)
T 3q72_A          162 IRLR  165 (166)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.96  E-value=1e-29  Score=176.81  Aligned_cols=150  Identities=19%  Similarity=0.241  Sum_probs=114.1

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+++|||||+++|     ...+.||++.++  ..+..++  +.+++|||||++++..++..+++.+|++|+|||+++
T Consensus        34 vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~  113 (201)
T 2hup_A           34 LVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITK  113 (201)
T ss_dssp             EEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTB
T ss_pred             EECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCC
Confidence            5678999999999976     456678877543  4455544  799999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCcee-EEEEeeeccCCCHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKW-HIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      +.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++.....     ...++ +++++||++|.|++++|+++
T Consensus       114 ~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~~SA~~g~gi~~l~~~l  187 (201)
T 2hup_A          114 RSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLA-----EHYDILCAIETSAKDSSNVEEAFLRV  187 (201)
T ss_dssp             HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCSEEEECBTTTTBSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHH-----HHcCCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999998886533 357999999999999652  3333333221     12344 79999999999999999999


Q ss_pred             HHHHHhhh
Q 030931          150 ASTLKEMR  157 (169)
Q Consensus       150 ~~~~~~~~  157 (169)
                      .+.+.+..
T Consensus       188 ~~~i~~~~  195 (201)
T 2hup_A          188 ATELIMRH  195 (201)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99988765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.96  E-value=2.4e-29  Score=172.68  Aligned_cols=146  Identities=10%  Similarity=0.080  Sum_probs=114.5

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE   74 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~   74 (169)
                      |++.+|+|||||+++|     ...+.||.+.....+...+  +.+++|||+|++.+.     +++.++++++|||++++.
T Consensus        25 ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~   99 (184)
T 3ihw_A           25 IVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEI   99 (184)
T ss_dssp             EECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHH
Confidence            5678999999999976     4456777664445556644  778889999998876     778899999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCCCCCc-eeEEEEeeeccCCCHHHHHHHH
Q 030931           75 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG----AMTPMEVCEGLGLFDLKNR-KWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      +|+.+..|+..+.......+.|+++|+||+|+.+    ....++.....     ... .++|+++||++|.|++++|+++
T Consensus       100 s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~Sa~~~~gv~~lf~~l  174 (184)
T 3ihw_A          100 SFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS-----TDLKRCTYYETCATYGLNVERVFQDV  174 (184)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH-----HHTTTCEEEEEBTTTTBTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHH-----HHcCCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999997765446899999999999842    22333322211     112 2579999999999999999999


Q ss_pred             HHHHHhhh
Q 030931          150 ASTLKEMR  157 (169)
Q Consensus       150 ~~~~~~~~  157 (169)
                      ++.+.+.+
T Consensus       175 ~~~i~~~~  182 (184)
T 3ihw_A          175 AQKVVALR  182 (184)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            99887764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.7e-29  Score=174.22  Aligned_cols=151  Identities=17%  Similarity=0.227  Sum_probs=121.1

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      |++.+++|||||++++     ...+.||.+..+  ..+..  ..+.+.+|||||++.+..++..+++.+|++|+|||+++
T Consensus        20 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~   99 (195)
T 1x3s_A           20 IIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTR   99 (195)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTC
T ss_pred             EECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcC
Confidence            5678999999999986     446677777554  33444  46889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      +.++..+..|+..+.......+.|+++|+||+|+.+. ...++.....     ...+++++++||+++.|++++|+++.+
T Consensus       100 ~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~  174 (195)
T 1x3s_A          100 RDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA-----RKHSMLFIEASAKTCDGVQCAFEELVE  174 (195)
T ss_dssp             HHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999876554468999999999999543 2223222211     223467999999999999999999999


Q ss_pred             HHHhhh
Q 030931          152 TLKEMR  157 (169)
Q Consensus       152 ~~~~~~  157 (169)
                      .+.+..
T Consensus       175 ~~~~~~  180 (195)
T 1x3s_A          175 KIIQTP  180 (195)
T ss_dssp             HHHTSG
T ss_pred             HHHhhh
Confidence            988754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.96  E-value=2.2e-29  Score=172.52  Aligned_cols=160  Identities=21%  Similarity=0.248  Sum_probs=122.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||+++|     ...+.||.+.++  ..+..++  +.+.+|||||++.+...+..+++.+|++|+|||+++
T Consensus        15 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   94 (186)
T 2bme_A           15 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS   94 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTC
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcC
Confidence            5678999999999976     455667777554  3445544  789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.++..+..|+..+.... ..+.|+++|+||+|+.+.  ....+.....     ...+++++++||++|.|++++|+++.
T Consensus        95 ~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~  168 (186)
T 2bme_A           95 RETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFA-----QENELMFLETSALTGENVEEAFVQCA  168 (186)
T ss_dssp             HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999988775432 257999999999998542  2223322211     22346799999999999999999999


Q ss_pred             HHHHhhhcccccccccc
Q 030931          151 STLKEMRAAGYSSVGTS  167 (169)
Q Consensus       151 ~~~~~~~~~~~~~~~~~  167 (169)
                      +.+.+........+.+|
T Consensus       169 ~~~~~~~~~~~~~~~~~  185 (186)
T 2bme_A          169 RKILNKIESGELDPERM  185 (186)
T ss_dssp             HHHHHHHHSCC------
T ss_pred             HHHHHHhhhcCCCcccc
Confidence            99988776665555554

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.96  E-value=3.5e-30  Score=180.85  Aligned_cols=152  Identities=13%  Similarity=0.103  Sum_probs=118.2

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE---EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK---VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+++|||||+++|     ...+.||++..+..   ++...+.+.+|||+|++++..++..+++.+|++|+|||++++
T Consensus        32 vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  111 (214)
T 3q3j_B           32 LVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRP  111 (214)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCT
T ss_pred             EECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCH
Confidence            5678999999999976     55677888876542   333678999999999999999999999999999999999999


Q ss_pred             hhHHH-HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCCCCCcee-EEEEeeec
Q 030931           74 ERIGK-AKQEFQAIIKDPFMLNSVILVFANKQDMKGA--------------MTPMEVCEGLGLFDLKNRKW-HIQGTCAL  137 (169)
Q Consensus        74 ~~~~~-~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~  137 (169)
                      .+|.. +..|+..+.+..  ++.|+++|+||+|+.+.              ...++....     ....++ +|++|||+
T Consensus       112 ~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~e~SA~  184 (214)
T 3q3j_B          112 ETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI-----AKQLGAEIYLEGSAF  184 (214)
T ss_dssp             HHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH-----HHHHTCSEEEECCTT
T ss_pred             HHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHH-----HHHcCCCEEEEeccC
Confidence            99998 688888876543  58999999999999642              222222111     123345 79999999


Q ss_pred             cCCC-HHHHHHHHHHHHHhhhccc
Q 030931          138 KGDG-LYEGLDWLASTLKEMRAAG  160 (169)
Q Consensus       138 ~~~g-i~~~~~~l~~~~~~~~~~~  160 (169)
                      +|.| ++++|+++.+.+.+.....
T Consensus       185 ~g~g~v~~lf~~l~~~~~~~~~~~  208 (214)
T 3q3j_B          185 TSEKSIHSIFRTASMLCLNKPSPL  208 (214)
T ss_dssp             TCHHHHHHHHHHHHHHHHC-----
T ss_pred             CCcccHHHHHHHHHHHHhccCcCC
Confidence            9998 9999999999988776443

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.96  E-value=1.9e-30  Score=176.83  Aligned_cols=154  Identities=14%  Similarity=0.190  Sum_probs=121.5

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE-EEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-VQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++..|+|||||++++     ...+.||.+..+.. +..+  .+.+.+|||||++++..++..+++.++++++|||++++
T Consensus        14 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   93 (181)
T 2fn4_A           14 VVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDR   93 (181)
T ss_dssp             EEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCH
Confidence            5678999999999976     45566777765543 4444  47899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      .++..+..|+..+++.....+.|+++|+||+|+.+.  ...++... +.    ...+++++++||++|.|++++|+++.+
T Consensus        94 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~~~l~~  168 (181)
T 2fn4_A           94 QSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA-FG----ASHHVAYFEASAKLRLNVDEAFEQLVR  168 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH-HH----HHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-HH----HHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            999999999988866444457999999999998653  22222221 21    223567999999999999999999999


Q ss_pred             HHHhhhccc
Q 030931          152 TLKEMRAAG  160 (169)
Q Consensus       152 ~~~~~~~~~  160 (169)
                      .+.+.....
T Consensus       169 ~~~~~~~~~  177 (181)
T 2fn4_A          169 AVRKYQEQE  177 (181)
T ss_dssp             HHHHHTTC-
T ss_pred             HHHHhhccC
Confidence            998765443

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=1.5e-30  Score=175.61  Aligned_cols=147  Identities=18%  Similarity=0.232  Sum_probs=115.5

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||++++     ...+.||.+..+  ..+..  ..+.+.+|||||++.+...+..+++.+|++++|||+++
T Consensus         8 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~   87 (170)
T 1ek0_A            8 LLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTK   87 (170)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCC
Confidence            5678999999999876     445667777554  33444  45789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-----CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-----MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                      +.++..+..|+..+.... ..+.|+++|+||+|+.+.     ...++... +    ....+++++++||++|.|++++|+
T Consensus        88 ~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           88 PQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEK-L----AEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHH-H----HHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHH-H----HHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999998886533 257999999999998643     12222111 1    122346799999999999999999


Q ss_pred             HHHHHHH
Q 030931          148 WLASTLK  154 (169)
Q Consensus       148 ~l~~~~~  154 (169)
                      ++.+.+.
T Consensus       162 ~l~~~i~  168 (170)
T 1ek0_A          162 GIGEKIP  168 (170)
T ss_dssp             HHHTTSC
T ss_pred             HHHHHHh
Confidence            9987653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.96  E-value=1.8e-30  Score=180.40  Aligned_cols=153  Identities=10%  Similarity=0.045  Sum_probs=117.1

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE---EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK---VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      |++.+|+|||||+++|     ...+.||.+..+..   ++...+.+.+|||||++.+..++..+++.+|++++|||++++
T Consensus        29 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  108 (201)
T 3oes_A           29 ILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSL  108 (201)
T ss_dssp             EEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCH
T ss_pred             EECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCH
Confidence            5779999999999976     45566777755432   334678999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      .+++.+..|+..+.......+.|+++|+||+|+.+..  ...+... +    ....+++++++||++|.|++++|+++.+
T Consensus       109 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  183 (201)
T 3oes_A          109 HSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK-L----AESWGATFMESSARENQLTQGIFTKVIQ  183 (201)
T ss_dssp             HHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHH-H----HHHhCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999876555689999999999986432  2222211 1    1233457999999999999999999999


Q ss_pred             HHHhhhcc
Q 030931          152 TLKEMRAA  159 (169)
Q Consensus       152 ~~~~~~~~  159 (169)
                      .+.+....
T Consensus       184 ~i~~~~~~  191 (201)
T 3oes_A          184 EIARVENS  191 (201)
T ss_dssp             HHHHC---
T ss_pred             HHHhhhhh
Confidence            99887544

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.96  E-value=3.6e-29  Score=172.23  Aligned_cols=152  Identities=16%  Similarity=0.248  Sum_probs=121.7

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE---EEEEC-----------CEEEEEEEcCCCCCchhhHHhhccCCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE---KVQYK-----------NVIFTVWDVGGQEKLRPLWRHYFNNTD   62 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~---~~~~~-----------~~~~~i~D~~G~~~~~~~~~~~~~~~~   62 (169)
                      |++.+|+|||||++++     .+.+.||++.++.   .+...           .+.+.+|||||++.+...+..+++.+|
T Consensus        16 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   95 (195)
T 3bc1_A           16 ALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAM   95 (195)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCS
T ss_pred             EECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCC
Confidence            5678999999999976     4566788887665   33333           579999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCC
Q 030931           63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGD  140 (169)
Q Consensus        63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  140 (169)
                      ++|+|||++++.++..+..|+..+.......+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|.
T Consensus        96 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~  170 (195)
T 3bc1_A           96 GFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELA-----EKYGIPYFETSAANGT  170 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCEEECCTTTCT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCCEEEEECCCCC
Confidence            99999999999999999999988876544468999999999999652  2223322211     1223469999999999


Q ss_pred             CHHHHHHHHHHHHHhhhc
Q 030931          141 GLYEGLDWLASTLKEMRA  158 (169)
Q Consensus       141 gi~~~~~~l~~~~~~~~~  158 (169)
                      |++++|+++.+.+.++..
T Consensus       171 ~v~~l~~~l~~~~~~~~~  188 (195)
T 3bc1_A          171 NISHAIEMLLDLIMKRME  188 (195)
T ss_dssp             THHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhh
Confidence            999999999998887643

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.96  E-value=1.9e-29  Score=172.47  Aligned_cols=149  Identities=17%  Similarity=0.136  Sum_probs=117.6

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE-EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||+++|     ...+.||.+..+.. +..  ..+.+++|||||++.+..++..+++.+|++++|||++++
T Consensus        23 v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  102 (183)
T 3kkq_A           23 VVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDK  102 (183)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCH
Confidence            5779999999999986     45666777755432 333  356678899999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeec-cCCCHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCAL-KGDGLYEGLDWLA  150 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~gi~~~~~~l~  150 (169)
                      .+++.+..|+..+.+.....+.|+++|+||+|+.+.  ...++.....     ...+++++++||+ +|.|++++|+++.
T Consensus       103 ~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~~v~~l~~~l~  177 (183)
T 3kkq_A          103 ASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA-----TKYNIPYIETSAKDPPLNVDKTFHDLV  177 (183)
T ss_dssp             HHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHH-----HHHTCCEEEEBCSSSCBSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHH-----HHhCCeEEEeccCCCCCCHHHHHHHHH
Confidence            999999999888866444468999999999998652  2333222211     2223569999999 9999999999999


Q ss_pred             HHHHh
Q 030931          151 STLKE  155 (169)
Q Consensus       151 ~~~~~  155 (169)
                      +.+.+
T Consensus       178 ~~i~~  182 (183)
T 3kkq_A          178 RVIRQ  182 (183)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            98765

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.96  E-value=6.1e-30  Score=172.21  Aligned_cols=149  Identities=13%  Similarity=0.101  Sum_probs=117.5

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE-EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||++++     ...+.||.+..+.. +..  ..+.+.+|||||++.+..++..+++.++++++|||++++
T Consensus         8 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   87 (167)
T 1c1y_A            8 VLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQ   87 (167)
T ss_dssp             EECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCH
Confidence            5678999999999976     45667787765533 233  468899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      .+++.+..|+..+.+.....+.|+++|+||+|+.+..  ..++......    ...+++++++||++|.|++++|+++.+
T Consensus        88 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~  163 (167)
T 1c1y_A           88 STFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNEIFYDLVR  163 (167)
T ss_dssp             HHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH----HccCCcEEEecCCCCCCHHHHHHHHHH
Confidence            9999999998888664334689999999999996532  2233222111    112467999999999999999999998


Q ss_pred             HHH
Q 030931          152 TLK  154 (169)
Q Consensus       152 ~~~  154 (169)
                      .+.
T Consensus       164 ~i~  166 (167)
T 1c1y_A          164 QIN  166 (167)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            763

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.96  E-value=4.7e-29  Score=175.07  Aligned_cols=151  Identities=17%  Similarity=0.283  Sum_probs=120.2

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEEC------------CEEEEEEEcCCCCCchhhHHhhccCCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQYK------------NVIFTVWDVGGQEKLRPLWRHYFNNTD   62 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~~------------~~~~~i~D~~G~~~~~~~~~~~~~~~~   62 (169)
                      |++.+++|||||+++|     ...+.||++.++.  .+.+.            .+.+++|||||++++...+..+++.+|
T Consensus        30 vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  109 (217)
T 2f7s_A           30 ALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAM  109 (217)
T ss_dssp             EESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCC
T ss_pred             EECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCC
Confidence            5678999999999976     4567788886553  33332            688999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCC
Q 030931           63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGD  140 (169)
Q Consensus        63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  140 (169)
                      ++|+|||+++..++..+..|+..+.......+.|+++|+||+|+.+.  ...++.....     ...+++++++||+++.
T Consensus       110 ~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~  184 (217)
T 2f7s_A          110 GFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELA-----DKYGIPYFETSAATGQ  184 (217)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCCEEEEBTTTTB
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHH-----HHCCCcEEEEECCCCC
Confidence            99999999999999999999988765444468999999999999653  2222222211     1223569999999999


Q ss_pred             CHHHHHHHHHHHHHhhh
Q 030931          141 GLYEGLDWLASTLKEMR  157 (169)
Q Consensus       141 gi~~~~~~l~~~~~~~~  157 (169)
                      |++++|+++.+.+.+..
T Consensus       185 gi~~l~~~l~~~i~~~~  201 (217)
T 2f7s_A          185 NVEKAVETLLDLIMKRM  201 (217)
T ss_dssp             THHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            99999999999887753

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.96  E-value=3.3e-29  Score=174.03  Aligned_cols=159  Identities=21%  Similarity=0.251  Sum_probs=118.5

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+++|||||+++|     ...+.||++..+  ..+..++  +.+.+|||||++.+..++..+++.+|++|+|||+++
T Consensus        30 v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~  109 (200)
T 2o52_A           30 VIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS  109 (200)
T ss_dssp             EEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTC
T ss_pred             EECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcC
Confidence            5678999999999986     355667777443  4455544  899999999999988889999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ....+.....     ...+++++++||++|.|++++|+++.
T Consensus       110 ~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~SA~~g~gi~~l~~~l~  183 (200)
T 2o52_A          110 RETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFA-----QENELMFLETSALTGENVEEAFLKCA  183 (200)
T ss_dssp             HHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999988875532 257999999999998642  2223322211     22346799999999999999999999


Q ss_pred             HHHHhhhccccccccc
Q 030931          151 STLKEMRAAGYSSVGT  166 (169)
Q Consensus       151 ~~~~~~~~~~~~~~~~  166 (169)
                      +.+.++.......+++
T Consensus       184 ~~i~~~~~~~~~~~~~  199 (200)
T 2o52_A          184 RTILNKIDSGELDPER  199 (200)
T ss_dssp             HHHHHHHHTTSSCGGG
T ss_pred             HHHHHHHhcCCCCccc
Confidence            9998876655545544

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=4.4e-29  Score=173.73  Aligned_cols=151  Identities=18%  Similarity=0.191  Sum_probs=119.6

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      |++.+|+|||||+++|     ...+.||++.++.  .+..+  .+.+++|||||++++..++..+++.+|++|+|||+++
T Consensus        31 lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~  110 (201)
T 2ew1_A           31 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC  110 (201)
T ss_dssp             EEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTC
T ss_pred             EECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC
Confidence            5678999999999976     4566778776543  45554  4789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|.|++++|+++.
T Consensus       111 ~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~~l~~~l~  184 (201)
T 2ew1_A          111 EESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFS-----EAQDMYYLETSAKESDNVEKLFLDLA  184 (201)
T ss_dssp             HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999988875532 247899999999998642  2223322211     12345699999999999999999999


Q ss_pred             HHHHhhhc
Q 030931          151 STLKEMRA  158 (169)
Q Consensus       151 ~~~~~~~~  158 (169)
                      +.+.+...
T Consensus       185 ~~i~~~~~  192 (201)
T 2ew1_A          185 CRLISEAR  192 (201)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            98887643

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.96  E-value=6.8e-29  Score=167.56  Aligned_cols=150  Identities=14%  Similarity=0.055  Sum_probs=108.0

Q ss_pred             ccccCCCCCceeeeecee-----e--eeeeeeEEEEEEEE--CCEEEEEEEcCCCCCchh-hHHhhccCCCEEEEEEECC
Q 030931            2 LRVKQPYCTSCTLVKFYL-----L--FLLLVRFNVEKVQY--KNVIFTVWDVGGQEKLRP-LWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-----~--~~~t~~~~~~~~~~--~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~ii~v~d~~   71 (169)
                      +++.+|+|||||+++|..     .  ..++.......+..  ..+.+.+|||||++.+.. ++..+++.+|++++|||++
T Consensus         7 ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~   86 (169)
T 3q85_A            7 LVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVT   86 (169)
T ss_dssp             EECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETT
T ss_pred             EECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECC
Confidence            577999999999998721     1  22222333344444  357889999999998876 7778899999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++++++.+..|+..+.......+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|.|++++|+++
T Consensus        87 ~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           87 DRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-----GTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             CHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHH-----HHcCCcEEEecCccCCCHHHHHHHH
Confidence            99999999999999877554458999999999998642  2333322211     2334579999999999999999999


Q ss_pred             HHHHHhh
Q 030931          150 ASTLKEM  156 (169)
Q Consensus       150 ~~~~~~~  156 (169)
                      .+.+..+
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988664

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.96  E-value=3.5e-29  Score=171.75  Aligned_cols=152  Identities=12%  Similarity=0.162  Sum_probs=115.7

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||++++     ...+.+|.+... ..+..  ..+.+.+|||||++.+..++..+++.++++++|||++++
T Consensus         9 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   88 (189)
T 4dsu_A            9 VVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT   88 (189)
T ss_dssp             EECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCH
Confidence            5779999999999976     344555555333 23344  346688899999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                      .+++.+..|+..+.......+.|+++|+||+|+.+.....+....+.    ...+++++++||++|.|++++|+++.+.+
T Consensus        89 ~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  164 (189)
T 4dsu_A           89 KSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA----RSYGIPFIETSAKTRQGVDDAFYTLVREI  164 (189)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH----HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999998887755556899999999999975432222222221    12234699999999999999999999988


Q ss_pred             Hhhh
Q 030931          154 KEMR  157 (169)
Q Consensus       154 ~~~~  157 (169)
                      .+..
T Consensus       165 ~~~~  168 (189)
T 4dsu_A          165 RKHK  168 (189)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            7754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.96  E-value=1.2e-29  Score=172.04  Aligned_cols=152  Identities=13%  Similarity=0.000  Sum_probs=109.2

Q ss_pred             ccccCCCCCceeeeeceee----eeeeeeEE--EEEEEEC--CEEEEEEEcCCCCC--chhhHHhhccCCCEEEEEEECC
Q 030931            2 LRVKQPYCTSCTLVKFYLL----FLLLVRFN--VEKVQYK--NVIFTVWDVGGQEK--LRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~----~~~t~~~~--~~~~~~~--~~~~~i~D~~G~~~--~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +++.+|+|||||+++|...    ..++.+.+  ...+...  .+.+.+|||||++.  +..++..+++.++++++|||++
T Consensus         9 i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~   88 (175)
T 2nzj_A            9 LLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIA   88 (175)
T ss_dssp             EECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETT
T ss_pred             EECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECC
Confidence            5778999999999988322    22444433  3334443  46899999999988  5677788999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++.+++.+..|+..+.+.....+.|+++|+||+|+.+..  ..++... +    ....+++++++||++|.|++++|+++
T Consensus        89 ~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~g~gi~~l~~~l  163 (175)
T 2nzj_A           89 DRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA-C----AVVFDCKFIETSATLQHNVAELFEGV  163 (175)
T ss_dssp             CHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH-H----HHHHTSEEEECBTTTTBSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH-H----HHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            999999999999888765444589999999999997542  2222211 1    11234579999999999999999999


Q ss_pred             HHHHHhhhc
Q 030931          150 ASTLKEMRA  158 (169)
Q Consensus       150 ~~~~~~~~~  158 (169)
                      .+.+.+.+.
T Consensus       164 ~~~~~~~~~  172 (175)
T 2nzj_A          164 VRQLRLRRR  172 (175)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhhc
Confidence            998877653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.96  E-value=4.3e-29  Score=167.95  Aligned_cols=149  Identities=16%  Similarity=0.146  Sum_probs=115.6

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||++++     ...+.||.+..+. .+..  ..+.+.+|||||++++..++..+++.++++++|||++++
T Consensus         9 v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   88 (168)
T 1u8z_A            9 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM   88 (168)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCH
Confidence            5678999999999976     3455666665543 3444  347899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      .+++.+..|+..+.......+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|.|++++|+++.+
T Consensus        89 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~  163 (168)
T 1u8z_A           89 ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----DQWNVNYVETSAKTRANVDKVFFDLMR  163 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHHHHHHHHH
Confidence            999999999888876544458999999999998643  2333332222     223457999999999999999999999


Q ss_pred             HHHh
Q 030931          152 TLKE  155 (169)
Q Consensus       152 ~~~~  155 (169)
                      .+.+
T Consensus       164 ~i~~  167 (168)
T 1u8z_A          164 EIRA  167 (168)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.96  E-value=1.3e-29  Score=175.53  Aligned_cols=151  Identities=15%  Similarity=0.085  Sum_probs=115.1

Q ss_pred             ccccCCCCCceeeeecee-----eeeeeee--EEEEEEEE--CCEEEEEEEcCCCCCchh-hHHhhccCCCEEEEEEECC
Q 030931            2 LRVKQPYCTSCTLVKFYL-----LFLLLVR--FNVEKVQY--KNVIFTVWDVGGQEKLRP-LWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-----~~~~t~~--~~~~~~~~--~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~ii~v~d~~   71 (169)
                      |++.+|+|||||+++|..     .+.|+.+  .....+..  ..+.+.+|||+|++++.. ++..+++.++++|+|||++
T Consensus        28 vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~  107 (195)
T 3cbq_A           28 LVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVT  107 (195)
T ss_dssp             EECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETT
T ss_pred             EECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECC
Confidence            677899999999999832     1223333  23333444  457889999999998765 7888999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++.+|+.+..|+..+.......+.|+++|+||+|+.+.  ...++... +.    ...+++++++||++|.|++++|+++
T Consensus       108 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~a----~~~~~~~~e~Sa~~~~~v~~lf~~l  182 (195)
T 3cbq_A          108 DRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-LA----GTLSCKHIETSAALHHNTRELFEGA  182 (195)
T ss_dssp             CHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHH-HH----HHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHH-HH----HHhCCEEEEEcCCCCCCHHHHHHHH
Confidence            99999999999988866443357999999999999653  23333222 11    1224579999999999999999999


Q ss_pred             HHHHHhhh
Q 030931          150 ASTLKEMR  157 (169)
Q Consensus       150 ~~~~~~~~  157 (169)
                      ++.+.+.+
T Consensus       183 ~~~i~~~~  190 (195)
T 3cbq_A          183 VRQIRLRR  190 (195)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHhc
Confidence            99887654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.96  E-value=5.3e-29  Score=171.99  Aligned_cols=149  Identities=15%  Similarity=0.188  Sum_probs=116.9

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE-EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||+++|     ...+.||.+..+.. +..  ..+.+++|||||++.+..++..+++.+|++++|||++++
T Consensus        28 ~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  107 (194)
T 3reg_A           28 VVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNR  107 (194)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred             EECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCH
Confidence            5678999999999986     45667888876554 333  457789999999999999999999999999999999999


Q ss_pred             hhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCCCCCceeE-EEEeeeccCCCHHHHHH
Q 030931           74 ERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWH-IQGTCALKGDGLYEGLD  147 (169)
Q Consensus        74 ~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~~~~  147 (169)
                      .++..+ ..|+..+...  .++.|+++|+||+|+.+.    ...++.....     ...++. ++++||++|.|++++|+
T Consensus       108 ~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~  180 (194)
T 3reg_A          108 TSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC-----QKLGCVAYIEASSVAKIGLNEVFE  180 (194)
T ss_dssp             HHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH-----HHHTCSCEEECBTTTTBSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHH-----HhcCCCEEEEeecCCCCCHHHHHH
Confidence            999997 5677666443  257999999999998642    2222222211     122334 99999999999999999


Q ss_pred             HHHHHHHhhh
Q 030931          148 WLASTLKEMR  157 (169)
Q Consensus       148 ~l~~~~~~~~  157 (169)
                      ++.+.+.+++
T Consensus       181 ~l~~~i~~~~  190 (194)
T 3reg_A          181 KSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHCSC
T ss_pred             HHHHHHHhcC
Confidence            9999887765

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.2e-29  Score=172.93  Aligned_cols=150  Identities=19%  Similarity=0.270  Sum_probs=109.7

Q ss_pred             ccccCCCCCceeeeec------eeeeeeeeeEEEEE--EEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            2 LRVKQPYCTSCTLVKF------YLLFLLLVRFNVEK--VQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f------~~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +++.+++|||||++++      ...+.||.+.++..  +...  .+.+.+|||||++.+..++..+++.+|++++|||++
T Consensus        15 v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~   94 (180)
T 2g6b_A           15 LVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVT   94 (180)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETT
T ss_pred             EECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECC
Confidence            5678999999999987      23566777766543  3443  468999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++.+++.+..|+..+..... .+.|+++|+||+|+.+..  ..++.....     ...+++++++||++|.|++++|+++
T Consensus        95 ~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l  168 (180)
T 2g6b_A           95 NKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLA-----KEYGLPFMETSAKTGLNVDLAFTAI  168 (180)
T ss_dssp             CHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999888765332 579999999999997532  222222111     1234569999999999999999999


Q ss_pred             HHHHHhhh
Q 030931          150 ASTLKEMR  157 (169)
Q Consensus       150 ~~~~~~~~  157 (169)
                      .+.+.+..
T Consensus       169 ~~~~~~~~  176 (180)
T 2g6b_A          169 AKELKRRS  176 (180)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHHh
Confidence            99887654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.96  E-value=5.4e-28  Score=166.88  Aligned_cols=153  Identities=22%  Similarity=0.309  Sum_probs=119.2

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+++|||||+++|     ...+.|+.+..+  ..+...+  +.+.+|||||++.+..++..+++.+|++++|||+++
T Consensus        21 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~  100 (196)
T 3tkl_A           21 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD  100 (196)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTC
T ss_pred             EECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcC
Confidence            5678999999999976     445567766544  4455544  789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+++.+..|+..+.... ..+.|+++|+||+|+.+...  ..+.....     ...+++++++||++|.|++++|+++.
T Consensus       101 ~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gv~~l~~~l~  174 (196)
T 3tkl_A          101 QESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFA-----DSLGIPFLETSAKNATNVEQSFMTMA  174 (196)
T ss_dssp             HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHH-----HHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence            999999999988875532 24799999999999965432  22221111     12234699999999999999999999


Q ss_pred             HHHHhhhccc
Q 030931          151 STLKEMRAAG  160 (169)
Q Consensus       151 ~~~~~~~~~~  160 (169)
                      +.+.+.....
T Consensus       175 ~~i~~~~~~~  184 (196)
T 3tkl_A          175 AEIKKRMGPG  184 (196)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHhccc
Confidence            9998875443

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.96  E-value=3.1e-29  Score=176.60  Aligned_cols=150  Identities=17%  Similarity=0.218  Sum_probs=121.8

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||+++|     ...+.||.+.+......    ..+.+.+|||||++.+..++..+++.++++++|||+++
T Consensus        20 v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~   99 (221)
T 3gj0_A           20 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS   99 (221)
T ss_dssp             EEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTC
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCC
Confidence            5779999999999985     45667888766554333    56899999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      ..++..+..|+..+.+..  ++.|+++|+||+|+.+.....+.     .......+++++++||++|.|++++|+++.+.
T Consensus       100 ~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  172 (221)
T 3gj0_A          100 RVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKS-----IVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  172 (221)
T ss_dssp             HHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGG-----CCHHHHHTCEEEECBGGGTBTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHH-----HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999999999887643  47999999999999754322211     11123345689999999999999999999999


Q ss_pred             HHhhhc
Q 030931          153 LKEMRA  158 (169)
Q Consensus       153 ~~~~~~  158 (169)
                      +.....
T Consensus       173 l~~~~~  178 (221)
T 3gj0_A          173 LIGDPN  178 (221)
T ss_dssp             HHTCTT
T ss_pred             HHhCcc
Confidence            887643

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.2e-29  Score=172.85  Aligned_cols=151  Identities=17%  Similarity=0.242  Sum_probs=118.9

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||++++     ...+.||.+..+  ..+...+  +.+.+|||||++.+..++..+++.+|++++|||+++
T Consensus        14 v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   93 (181)
T 3tw8_B           14 IIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS   93 (181)
T ss_dssp             EECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTC
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCC
Confidence            5779999999999986     345556666443  4455555  889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.++..+..|+..+.+..  ++.|+++|+||+|+.+..  ...+.....     ...+++++++||++|.|++++|+++.
T Consensus        94 ~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~  166 (181)
T 3tw8_B           94 AESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFA-----GQMGIQLFETSAKENVNVEEMFNCIT  166 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHH-----HHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999998886533  579999999999986532  222221111     22235699999999999999999999


Q ss_pred             HHHHhhhcc
Q 030931          151 STLKEMRAA  159 (169)
Q Consensus       151 ~~~~~~~~~  159 (169)
                      +.+.+.+..
T Consensus       167 ~~~~~~~~~  175 (181)
T 3tw8_B          167 ELVLRAKKD  175 (181)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhh
Confidence            988886543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.96  E-value=1.6e-28  Score=170.74  Aligned_cols=151  Identities=16%  Similarity=0.148  Sum_probs=120.7

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||++++     ...+.||.+..+ ..+...  .+.+.+|||||++.+..++..+++.++++++|||+++.
T Consensus        19 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   98 (206)
T 2bov_A           19 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM   98 (206)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCH
Confidence            5678999999999976     345667776544 334444  46899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      .++..+..|+..+.......+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|.|++++|+++.+
T Consensus        99 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~~l~~~l~~  173 (206)
T 2bov_A           99 ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVDKVFFDLMR  173 (206)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH-----HHhCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999988877554458999999999999653  2333332221     223457999999999999999999999


Q ss_pred             HHHhhh
Q 030931          152 TLKEMR  157 (169)
Q Consensus       152 ~~~~~~  157 (169)
                      .+.+.+
T Consensus       174 ~i~~~~  179 (206)
T 2bov_A          174 EIRARK  179 (206)
T ss_dssp             HHHHHH
T ss_pred             HHHHcc
Confidence            887753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.96  E-value=1.4e-28  Score=167.25  Aligned_cols=151  Identities=13%  Similarity=0.162  Sum_probs=116.0

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||++++     ...+.||.+.++.  .+..++  +.+.+|||||++.+...+..+++.+|++++|||+++
T Consensus        12 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~   91 (177)
T 1wms_A           12 LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDD   91 (177)
T ss_dssp             EECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTC
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcC
Confidence            5678999999999976     4566778876543  344544  799999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcC---CCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKD---PFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  148 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~---~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  148 (169)
                      ..+++.+..|+..+...   ....+.|+++|+||+|+.+. ...++......    ...+++++++||++|.|++++|++
T Consensus        92 ~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l~~~  167 (177)
T 1wms_A           92 SQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDATNVAAAFEE  167 (177)
T ss_dssp             HHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHH----hcCCceEEEEeCCCCCCHHHHHHH
Confidence            99999998888877542   22357899999999999632 23333332221    123456999999999999999999


Q ss_pred             HHHHHHhh
Q 030931          149 LASTLKEM  156 (169)
Q Consensus       149 l~~~~~~~  156 (169)
                      +.+.+.+.
T Consensus       168 l~~~~~~~  175 (177)
T 1wms_A          168 AVRRVLAT  175 (177)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHhh
Confidence            99988653

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.96  E-value=3.4e-29  Score=170.36  Aligned_cols=151  Identities=14%  Similarity=0.238  Sum_probs=117.1

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeee--EEEEEEEECC---EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVR--FNVEKVQYKN---VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~--~~~~~~~~~~---~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +++.+++|||||++++     ...+.||++  +....+...+   +.+++|||||++.+..++..+++.+|++++|||++
T Consensus        11 v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~   90 (178)
T 2hxs_A           11 VLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDIT   90 (178)
T ss_dssp             EECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETT
T ss_pred             EECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECC
Confidence            5678999999999987     345567877  4445566654   89999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                      ++.+++.+..|+..+.....  ....|+++|+||+|+.+.  ...++.....     ...+++++++||++|.|++++|+
T Consensus        91 ~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~  165 (178)
T 2hxs_A           91 NYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC-----QENGFSSHFVSAKTGDSVFLCFQ  165 (178)
T ss_dssp             CHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEEECTTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH-----HHcCCcEEEEeCCCCCCHHHHHH
Confidence            99999999888887754210  123448999999998652  2223222211     22346799999999999999999


Q ss_pred             HHHHHHHhhh
Q 030931          148 WLASTLKEMR  157 (169)
Q Consensus       148 ~l~~~~~~~~  157 (169)
                      ++.+.+.+..
T Consensus       166 ~l~~~~~~~~  175 (178)
T 2hxs_A          166 KVAAEILGIK  175 (178)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHHhhh
Confidence            9999887654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.96  E-value=1.1e-28  Score=168.87  Aligned_cols=151  Identities=16%  Similarity=0.147  Sum_probs=120.4

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||++++     ...+.+|.+..+. .+...  .+.+.+|||||++.+..++..+++.+|++++|||++++
T Consensus        23 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  102 (187)
T 2a9k_A           23 MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM  102 (187)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCH
Confidence            5678999999999976     3455666665543 34443  46899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      .++..+..|+..+.......+.|+++|+||+|+.+.  ...++.....     ...+++++++||+++.|++++|+++.+
T Consensus       103 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~  177 (187)
T 2a9k_A          103 ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-----EQWNVNYVETSAKTRANVDKVFFDLMR  177 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH-----HHcCCeEEEeCCCCCCCHHHHHHHHHH
Confidence            999999999888876544458999999999998653  2333333222     223457999999999999999999999


Q ss_pred             HHHhhh
Q 030931          152 TLKEMR  157 (169)
Q Consensus       152 ~~~~~~  157 (169)
                      .+.+.+
T Consensus       178 ~i~~~~  183 (187)
T 2a9k_A          178 EIRARK  183 (187)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            887754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=5.1e-30  Score=176.77  Aligned_cols=150  Identities=17%  Similarity=0.251  Sum_probs=119.7

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      |++.+++|||||+++|     ...+.||.+..+.  .+..  ..+.+.+|||||++.+..++..+++.+|++++|||+++
T Consensus        28 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~  107 (191)
T 3dz8_A           28 IIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN  107 (191)
T ss_dssp             EEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTC
T ss_pred             EECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcC
Confidence            5678999999999986     4666777774433  3333  67999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+++.+..|+..+.... ..+.|+++|+||+|+.+..  ..++... +    ....+++++++||++|.|++++|+++.
T Consensus       108 ~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~l~~~l~  181 (191)
T 3dz8_A          108 EESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQL-L----AEQLGFDFFEASAKENISVRQAFERLV  181 (191)
T ss_dssp             HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHH-H----HHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHH-H----HHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999988886532 3579999999999986432  2222211 1    122345799999999999999999999


Q ss_pred             HHHHhhh
Q 030931          151 STLKEMR  157 (169)
Q Consensus       151 ~~~~~~~  157 (169)
                      +.+.++.
T Consensus       182 ~~i~~~~  188 (191)
T 3dz8_A          182 DAICDKM  188 (191)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            9887764

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.96  E-value=2.3e-28  Score=169.85  Aligned_cols=150  Identities=16%  Similarity=0.232  Sum_probs=118.7

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      |++.+++|||||++++     ...+.||.+..+.  .+..  ..+.+.+|||||++++..++..+++.+|++|+|||+++
T Consensus        13 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~   92 (203)
T 1zbd_A           13 IIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITN   92 (203)
T ss_dssp             EECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTC
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcC
Confidence            5678999999999976     3566778775543  3443  36799999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+++.+..|+..+.... ..+.|+++|+||+|+.+..  ..++.....     ...+++++++||++|.|++++|+++.
T Consensus        93 ~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~  166 (203)
T 1zbd_A           93 EESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLA-----DHLGFEFFEASAKDNINVKQTFERLV  166 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHH-----HHCCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999988875532 3578999999999996532  222222111     12345799999999999999999999


Q ss_pred             HHHHhhh
Q 030931          151 STLKEMR  157 (169)
Q Consensus       151 ~~~~~~~  157 (169)
                      +.+.++.
T Consensus       167 ~~i~~~~  173 (203)
T 1zbd_A          167 DVICEKM  173 (203)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.96  E-value=1.7e-28  Score=168.86  Aligned_cols=150  Identities=16%  Similarity=0.238  Sum_probs=118.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+++|||||++++     ...+.+|.+.++.  .+..  ..+.+.+|||||++.+...+..+++.+|++++|||+++
T Consensus        27 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~  106 (189)
T 2gf9_A           27 LIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIAN  106 (189)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTC
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCC
Confidence            5678999999999976     4556777775543  3343  46789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+++.+..|+..+.... ..+.|+++|+||+|+.+..  ..++.....     ...+++++++||++|.|++++|+++.
T Consensus       107 ~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~~l~~~l~  180 (189)
T 2gf9_A          107 QESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLA-----DDLGFEFFEASAKENINVKQVFERLV  180 (189)
T ss_dssp             HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHH-----HHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999988875532 3579999999999986532  222222211     22345799999999999999999999


Q ss_pred             HHHHhhh
Q 030931          151 STLKEMR  157 (169)
Q Consensus       151 ~~~~~~~  157 (169)
                      +.+.++.
T Consensus       181 ~~i~~~~  187 (189)
T 2gf9_A          181 DVICEKM  187 (189)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9887653

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.96  E-value=1.1e-28  Score=171.66  Aligned_cols=151  Identities=15%  Similarity=0.088  Sum_probs=92.0

Q ss_pred             ccccCCCCCceeeeece-------eeeeeeeeEE--EEEEEEC----CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEE
Q 030931            2 LRVKQPYCTSCTLVKFY-------LLFLLLVRFN--VEKVQYK----NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV   68 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-------~~~~~t~~~~--~~~~~~~----~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~   68 (169)
                      +++.+|+|||||+++|.       ..+.||.+.+  ...+..+    .+.+.+|||||++.+..++..+++.+|++|+||
T Consensus        25 v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~  104 (208)
T 2yc2_C           25 VVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVF  104 (208)
T ss_dssp             EC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEE
T ss_pred             EECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEE
Confidence            56789999999999773       3556777743  3445554    689999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCC---CCCHhHHHhhhCCCCCCCceeEEEEeeecc-CCCH
Q 030931           69 DSLDRERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKG---AMTPMEVCEGLGLFDLKNRKWHIQGTCALK-GDGL  142 (169)
Q Consensus        69 d~~~~~~~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~gi  142 (169)
                      |++++.+++.+..|+..+.....  ..+.|+++|+||+|+.+   ....++.....     ...+++++++||++ |.|+
T Consensus       105 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~gi  179 (208)
T 2yc2_C          105 DVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA-----TTNTLDFFDVSANPPGKDA  179 (208)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHH-----HHTTCEEEECCC-------
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHH-----HHcCCEEEEeccCCCCcCH
Confidence            99999999999999988876432  25799999999999975   22333332221     22346799999999 9999


Q ss_pred             HHHHHHHHHHHHhhh
Q 030931          143 YEGLDWLASTLKEMR  157 (169)
Q Consensus       143 ~~~~~~l~~~~~~~~  157 (169)
                      +++|+++.+.+.+..
T Consensus       180 ~~l~~~i~~~~~~~~  194 (208)
T 2yc2_C          180 DAPFLSIATTFYRNY  194 (208)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.96  E-value=3e-28  Score=168.04  Aligned_cols=150  Identities=16%  Similarity=0.188  Sum_probs=119.5

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      |++.+|+|||||++++     ...+.+|++..+..  +..  ..+.+.+|||||++++..++..+++.++++|+|||+++
T Consensus        30 v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~  109 (193)
T 2oil_A           30 LIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTK  109 (193)
T ss_dssp             EESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTC
T ss_pred             EECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCC
Confidence            5678999999999976     34566777755433  333  46889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.++..+..|+..+.... ..+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|.|++++|+++.
T Consensus       110 ~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~  183 (193)
T 2oil_A          110 HQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFA-----ENNGLLFLETSALDSTNVELAFETVL  183 (193)
T ss_dssp             HHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999998886543 357999999999998653  2223322211     22346799999999999999999999


Q ss_pred             HHHHhhh
Q 030931          151 STLKEMR  157 (169)
Q Consensus       151 ~~~~~~~  157 (169)
                      +.+.++.
T Consensus       184 ~~i~~~~  190 (193)
T 2oil_A          184 KEIFAKV  190 (193)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9887754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.95  E-value=1.8e-28  Score=169.00  Aligned_cols=150  Identities=20%  Similarity=0.267  Sum_probs=115.6

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEE--EEEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFN--VEKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+++|||||+++|     ...+.||.+.+  ...+..+  .+.+++|||||++.+..++..+++.++++|+|||+++
T Consensus        26 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~  105 (191)
T 2a5j_A           26 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR  105 (191)
T ss_dssp             EESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTC
T ss_pred             EECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCC
Confidence            5678999999999976     34556676643  3445554  4789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      ..+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|.|++++|+++.
T Consensus       106 ~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~  179 (191)
T 2a5j_A          106 RETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFA-----REHGLIFMETSAKTACNVEEAFINTA  179 (191)
T ss_dssp             HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999998886532 257999999999999642  2233322211     22345799999999999999999999


Q ss_pred             HHHHhhh
Q 030931          151 STLKEMR  157 (169)
Q Consensus       151 ~~~~~~~  157 (169)
                      +.+.++.
T Consensus       180 ~~i~~~~  186 (191)
T 2a5j_A          180 KEIYRKI  186 (191)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.95  E-value=1.2e-28  Score=167.99  Aligned_cols=150  Identities=20%  Similarity=0.220  Sum_probs=116.6

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+++|||||++++     ...+.+|++..+  ..+..  ..+.+.+|||||++.+...+..+++.+|++++|||+++
T Consensus        17 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   96 (181)
T 2efe_B           17 LLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTN   96 (181)
T ss_dssp             EECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred             EECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCC
Confidence            5678999999999987     334456776443  34444  36789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+++.+..|+..+.... .++.|+++|+||+|+.+..  ..++.....     ...+++++++||++|.|++++|+++.
T Consensus        97 ~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~~l~~~l~  170 (181)
T 2efe_B           97 QASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYA-----QENGLFFMETSAKTATNVKEIFYEIA  170 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCEEEECCSSSCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHH-----HHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            999999999998886643 2589999999999996532  233332221     22345799999999999999999999


Q ss_pred             HHHHhhh
Q 030931          151 STLKEMR  157 (169)
Q Consensus       151 ~~~~~~~  157 (169)
                      +.+.+..
T Consensus       171 ~~~~~~~  177 (181)
T 2efe_B          171 RRLPRVQ  177 (181)
T ss_dssp             HTCC---
T ss_pred             HHHHhcC
Confidence            8776543

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.95  E-value=1e-28  Score=166.48  Aligned_cols=147  Identities=21%  Similarity=0.236  Sum_probs=116.1

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+++|||||++++     .+.+.||.+..+  ..+..  ..+.+.+|||||++.+...+..+++.+|++++|||+++
T Consensus        11 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~   90 (170)
T 1r2q_A           11 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN   90 (170)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCC
Confidence            5678999999999987     344567777554  33444  46889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.++..+..|+..+.+.. .++.|+++|+||+|+.+.  ...++.....     ...+++++++||++|.|++++|+++.
T Consensus        91 ~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~~l~~~i~  164 (170)
T 1r2q_A           91 EESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYA-----DDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999999998886532 257999999999998642  2223332211     22346799999999999999999998


Q ss_pred             HHHH
Q 030931          151 STLK  154 (169)
Q Consensus       151 ~~~~  154 (169)
                      +.+.
T Consensus       165 ~~~~  168 (170)
T 1r2q_A          165 KKLP  168 (170)
T ss_dssp             HTSC
T ss_pred             HHHh
Confidence            7653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.95  E-value=7.5e-29  Score=167.41  Aligned_cols=148  Identities=20%  Similarity=0.216  Sum_probs=110.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||++++     ...+.||.+..+.  .+..  ..+.+.+|||||++.+..++..+++.+|++++|||+++
T Consensus        11 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   90 (170)
T 1z08_A           11 LLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITD   90 (170)
T ss_dssp             EECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTC
T ss_pred             EECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcC
Confidence            5678999999999876     4566788886554  3443  45789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      ..+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|.|++++|+++.
T Consensus        91 ~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~  164 (170)
T 1z08_A           91 EDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYA-----ESVGAKHYHTSAKQNKGIEELFLDLC  164 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999988764422 247899999999998652  2333332221     22346799999999999999999999


Q ss_pred             HHHHh
Q 030931          151 STLKE  155 (169)
Q Consensus       151 ~~~~~  155 (169)
                      +.+.+
T Consensus       165 ~~~~~  169 (170)
T 1z08_A          165 KRMIE  169 (170)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            88764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.95  E-value=5.7e-29  Score=167.89  Aligned_cols=149  Identities=26%  Similarity=0.360  Sum_probs=112.2

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||++++     ...+.||.+.++  ..+..+  .+.+.+|||||++.+..++..+++.+|++++|||+++
T Consensus         8 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~   87 (170)
T 1g16_A            8 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD   87 (170)
T ss_dssp             EEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTC
T ss_pred             EECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCC
Confidence            5678999999999976     456677777444  344443  5789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      +.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++... +.    ...+++++++||++|.|++++|+++.+
T Consensus        88 ~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gv~~l~~~l~~  161 (170)
T 1g16_A           88 ERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEA-LA----KELGIPFIESSAKNDDNVNEIFFTLAK  161 (170)
T ss_dssp             HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHH-HH----HHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHH-HH----HHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            999999999988876532 2478999999999995432 2222221 11    122356999999999999999999999


Q ss_pred             HHHhh
Q 030931          152 TLKEM  156 (169)
Q Consensus       152 ~~~~~  156 (169)
                      .+.++
T Consensus       162 ~~~~~  166 (170)
T 1g16_A          162 LIQEK  166 (170)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            88765

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.7e-28  Score=169.35  Aligned_cols=149  Identities=16%  Similarity=0.162  Sum_probs=118.4

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+++|||||++++     ...+.||.+.++..  +..  ..+.+.+|||||++++...+..+++.++++++|||+++
T Consensus        28 vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~  107 (192)
T 2fg5_A           28 LLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITK  107 (192)
T ss_dssp             EEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred             EECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCC
Confidence            5678999999999987     34667888865543  333  56899999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC--CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG--AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....++..+..     ...+++++++||++|.|++++|+++.
T Consensus       108 ~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~  181 (192)
T 2fg5_A          108 QDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYA-----ESIGAIVVETSAKNAINIEELFQGIS  181 (192)
T ss_dssp             THHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            999999999988876532 35799999999999864  22333333322     23456899999999999999999999


Q ss_pred             HHHHhh
Q 030931          151 STLKEM  156 (169)
Q Consensus       151 ~~~~~~  156 (169)
                      +.+.+.
T Consensus       182 ~~i~~~  187 (192)
T 2fg5_A          182 RQIPPL  187 (192)
T ss_dssp             HTCC--
T ss_pred             HHHHhh
Confidence            877543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2.3e-28  Score=168.76  Aligned_cols=147  Identities=14%  Similarity=0.127  Sum_probs=114.2

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+++|||||+++|     ...+.||.+..+. .+...  .+.+++|||||++++..++..+++.+|++++|||++++
T Consensus        23 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  102 (194)
T 2atx_A           23 VVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNP  102 (194)
T ss_dssp             EEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCH
Confidence            5678999999999976     4566778775542 34443  48899999999999999999999999999999999999


Q ss_pred             hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCCCCCcee-EEEEeeec
Q 030931           74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGA--------------MTPMEVCEGLGLFDLKNRKW-HIQGTCAL  137 (169)
Q Consensus        74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~  137 (169)
                      ++|..+. .|+..+.+..  ++.|+++|+||+|+.+.              ...++.....     ...+. +++++||+
T Consensus       103 ~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~Sa~  175 (194)
T 2atx_A          103 ASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA-----KEIGACCYVECSAL  175 (194)
T ss_dssp             HHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH-----HHHTCSCEEECCTT
T ss_pred             HHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHH-----HHcCCcEEEEeeCC
Confidence            9999987 7887775532  47999999999999653              1111111100     11222 69999999


Q ss_pred             cCCCHHHHHHHHHHHHHh
Q 030931          138 KGDGLYEGLDWLASTLKE  155 (169)
Q Consensus       138 ~~~gi~~~~~~l~~~~~~  155 (169)
                      +|.|++++|+++.+.+..
T Consensus       176 ~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          176 TQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999988753

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.95  E-value=2.8e-28  Score=169.80  Aligned_cols=149  Identities=24%  Similarity=0.329  Sum_probs=118.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      |++.+|+|||||++++     ...+.||++.++  ..+..+  .+.+.+|||||++++...+..+++.+|++|+|||+++
T Consensus        13 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~   92 (206)
T 2bcg_Y           13 LIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD   92 (206)
T ss_dssp             EEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTC
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcC
Confidence            5678999999999976     445667777544  345554  4689999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.++..+..|+..+.... ..+.|+++|+||+|+.+..  ..++.....     ...+++++++||++|.|++++|+++.
T Consensus        93 ~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g~gi~~l~~~l~  166 (206)
T 2bcg_Y           93 QESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVEDAFLTMA  166 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999999988875532 2479999999999997532  222222211     12345699999999999999999999


Q ss_pred             HHHHhh
Q 030931          151 STLKEM  156 (169)
Q Consensus       151 ~~~~~~  156 (169)
                      +.+.+.
T Consensus       167 ~~i~~~  172 (206)
T 2bcg_Y          167 RQIKES  172 (206)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988765

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2.6e-29  Score=176.04  Aligned_cols=151  Identities=15%  Similarity=0.032  Sum_probs=111.6

Q ss_pred             ccccCCCCCceeeeecee------eeeeeeeEE--EEEEEEC--CEEEEEEEcCCCCC-chhhHHhhccCCCEEEEEEEC
Q 030931            2 LRVKQPYCTSCTLVKFYL------LFLLLVRFN--VEKVQYK--NVIFTVWDVGGQEK-LRPLWRHYFNNTDGLIYVVDS   70 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~------~~~~t~~~~--~~~~~~~--~~~~~i~D~~G~~~-~~~~~~~~~~~~~~ii~v~d~   70 (169)
                      |++.+++|||||+++|..      ...++.+.+  ...+...  .+.+.+|||+|++. +..+...+++.++++|+|||+
T Consensus        42 lvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydv  121 (211)
T 2g3y_A           42 LIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSI  121 (211)
T ss_dssp             EECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEET
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEEC
Confidence            678999999999999842      222445533  2334443  46788999999987 566777889999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931           71 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  148 (169)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  148 (169)
                      +++.+|+.+..|+..+.+.....+.|+++|+||+|+.+.  ...++.. .+    ....++++++|||++|+||+++|++
T Consensus       122 t~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~-~~----a~~~~~~~~e~SAk~g~~v~elf~~  196 (211)
T 2g3y_A          122 TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR-AC----AVVFDCKFIETSAAVQHNVKELFEG  196 (211)
T ss_dssp             TCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHH-HH----HHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999888765433357999999999999642  2222211 11    1123457999999999999999999


Q ss_pred             HHHHHHhhh
Q 030931          149 LASTLKEMR  157 (169)
Q Consensus       149 l~~~~~~~~  157 (169)
                      +++.+...+
T Consensus       197 l~~~i~~~~  205 (211)
T 2g3y_A          197 IVRQVRLRR  205 (211)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            999886544

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.95  E-value=3.8e-29  Score=168.78  Aligned_cols=147  Identities=18%  Similarity=0.156  Sum_probs=115.8

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||++++     .+.+.||.+..+.  .+..  ..+.+.+|||||++.+...+..+++.+|++++|||+++
T Consensus        11 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~   90 (170)
T 1z0j_A           11 LLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK   90 (170)
T ss_dssp             EECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred             EECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcC
Confidence            5678999999999976     3455677775543  3444  35889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.++..+..|+..+... ..++.|+++|+||+|+.+..  ..++.....     ...+++++++||++|.|++++|+++.
T Consensus        91 ~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~i~  164 (170)
T 1z0j_A           91 EETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYA-----DSIHAIFVETSAKNAININELFIEIS  164 (170)
T ss_dssp             HHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            99999999998887653 23579999999999996532  222222211     22346799999999999999999998


Q ss_pred             HHHH
Q 030931          151 STLK  154 (169)
Q Consensus       151 ~~~~  154 (169)
                      +.+.
T Consensus       165 ~~i~  168 (170)
T 1z0j_A          165 RRIP  168 (170)
T ss_dssp             HHCC
T ss_pred             HHHh
Confidence            8653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.95  E-value=4.7e-29  Score=167.98  Aligned_cols=147  Identities=16%  Similarity=0.219  Sum_probs=117.0

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||++++     ...+.||.+.++  ..+...  .+.+.+|||||++.+..++..+++.+|++++|||+++
T Consensus        10 v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   89 (168)
T 1z2a_A           10 VVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTD   89 (168)
T ss_dssp             EECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTC
T ss_pred             EECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcC
Confidence            5678999999999976     456677777443  344443  5789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+++.+..|+..+....  .+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|.|++++|+++.
T Consensus        90 ~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~  162 (168)
T 1z2a_A           90 RESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLA-----KRLKLRFYRTSVKEDLNVSEVFKYLA  162 (168)
T ss_dssp             HHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHH-----HHcCCeEEEEecCCCCCHHHHHHHHH
Confidence            999999999988886533  57899999999998642  2233332211     22345799999999999999999999


Q ss_pred             HHHHh
Q 030931          151 STLKE  155 (169)
Q Consensus       151 ~~~~~  155 (169)
                      +.+.+
T Consensus       163 ~~~~~  167 (168)
T 1z2a_A          163 EKHLQ  167 (168)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            88764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.95  E-value=2.5e-28  Score=165.99  Aligned_cols=148  Identities=18%  Similarity=0.262  Sum_probs=115.9

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+++|||||++++     ...+.+|.+..+  ..+..  ..+.+.+|||||++.+...+..+++.+|++++|||+++
T Consensus        20 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   99 (179)
T 1z0f_A           20 IIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR   99 (179)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTC
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcC
Confidence            5678999999999986     344566766443  33444  35789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      ..+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++..+..     ...+++++++||++|.|++++|+++.
T Consensus       100 ~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~  173 (179)
T 1z0f_A          100 RSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFA-----EENGLLFLEASAKTGENVEDAFLEAA  173 (179)
T ss_dssp             HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH-----HHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999988775532 247899999999999642  2233332221     22346799999999999999999999


Q ss_pred             HHHHh
Q 030931          151 STLKE  155 (169)
Q Consensus       151 ~~~~~  155 (169)
                      +.+.+
T Consensus       174 ~~i~~  178 (179)
T 1z0f_A          174 KKIYQ  178 (179)
T ss_dssp             HHHC-
T ss_pred             HHHhh
Confidence            87754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.95  E-value=1.8e-29  Score=169.70  Aligned_cols=149  Identities=14%  Similarity=0.133  Sum_probs=115.7

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+++|||||++++     ...+.||.+... ..+...  .+.+.+|||||++.+..++..+++.++++++|||++++
T Consensus         8 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   87 (167)
T 1kao_A            8 VLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQ   87 (167)
T ss_dssp             EECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCH
Confidence            5678999999999976     344556665432 334443  46799999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      .+++.+..|+..+.+.....+.|+++|+||+|+.+..  ...+.....     ...+++++++||++|.|++++|+++.+
T Consensus        88 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~  162 (167)
T 1kao_A           88 QSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALA-----EEWGCPFMETSAKSKTMVDELFAEIVR  162 (167)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSCEEEECTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHH-----HHhCCCEEEecCCCCcCHHHHHHHHHH
Confidence            9999999998888765444689999999999985432  222221111     122346999999999999999999998


Q ss_pred             HHHh
Q 030931          152 TLKE  155 (169)
Q Consensus       152 ~~~~  155 (169)
                      .+.+
T Consensus       163 ~~~~  166 (167)
T 1kao_A          163 QMNY  166 (167)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            7753

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.95  E-value=3.6e-28  Score=163.00  Aligned_cols=149  Identities=13%  Similarity=0.149  Sum_probs=115.6

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||++++     ...+.+|.+..+ ..+..  ..+.+.+|||||++.+...+..+++.+|++++|||+++.
T Consensus         8 v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   87 (166)
T 2ce2_X            8 VVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT   87 (166)
T ss_dssp             EEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCH
Confidence            5678999999999976     344556665443 23343  357789999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      .++..+..|+..+.......+.|+++|+||+|+.+.. ..++... +.    ...+++++++||++|.|++++|+++.+.
T Consensus        88 ~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  162 (166)
T 2ce2_X           88 KSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQD-LA----RSYGIPYIETSAKTRQGVEDAFYTLVRE  162 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHH-HH----HHHTCCEEEECTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHH-HH----HHcCCeEEEecCCCCCCHHHHHHHHHHH
Confidence            9999999998887664433579999999999987532 2222222 11    1223569999999999999999999988


Q ss_pred             HHh
Q 030931          153 LKE  155 (169)
Q Consensus       153 ~~~  155 (169)
                      +.+
T Consensus       163 ~~~  165 (166)
T 2ce2_X          163 IRQ  165 (166)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.8e-28  Score=171.99  Aligned_cols=151  Identities=16%  Similarity=0.212  Sum_probs=112.4

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      |++.+++|||||+++|     ...+.||++..+  ..+..++  +.+.+|||||++++..++..+++.++++|+|||+++
T Consensus        18 v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~   97 (223)
T 3cpj_B           18 LIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISK   97 (223)
T ss_dssp             EESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CC
T ss_pred             EECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCC
Confidence            5678999999999986     345667777443  4455554  799999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|.|++++|+++.
T Consensus        98 ~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~  171 (223)
T 3cpj_B           98 SSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFA-----QENQLLFTETSALNSENVDKAFEELI  171 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHH-----HHTTCEEEECCCC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHH-----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999998886532 357899999999998642  2323322211     22346799999999999999999999


Q ss_pred             HHHHhhhc
Q 030931          151 STLKEMRA  158 (169)
Q Consensus       151 ~~~~~~~~  158 (169)
                      +.+.+...
T Consensus       172 ~~i~~~~~  179 (223)
T 3cpj_B          172 NTIYQKVS  179 (223)
T ss_dssp             HHHTTCC-
T ss_pred             HHHHHHhh
Confidence            98887543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.95  E-value=2.1e-28  Score=170.38  Aligned_cols=152  Identities=13%  Similarity=0.121  Sum_probs=118.4

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||++++     ...+.||.+.++..  +..  ..+.+.+|||||++.+..++..+++.+|++|+|||+++
T Consensus        13 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   92 (207)
T 1vg8_A           13 ILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTA   92 (207)
T ss_dssp             EECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTC
T ss_pred             EECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCC
Confidence            5678999999999976     45667777755543  333  35899999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDP---FMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  148 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  148 (169)
                      +.++..+..|+..+....   ...+.|+++|+||+|+.+.. ..++......    ...+++++++||++|.|++++|++
T Consensus        93 ~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~g~gi~~l~~~  168 (207)
T 1vg8_A           93 PNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY----SKNNIPYFETSAKEAINVEQAFQT  168 (207)
T ss_dssp             HHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH----HTTSCCEEECBTTTTBSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH----hcCCceEEEEeCCCCCCHHHHHHH
Confidence            999999988888775522   12478999999999997432 2222222211    123456999999999999999999


Q ss_pred             HHHHHHhhh
Q 030931          149 LASTLKEMR  157 (169)
Q Consensus       149 l~~~~~~~~  157 (169)
                      +.+.+.+..
T Consensus       169 l~~~~~~~~  177 (207)
T 1vg8_A          169 IARNALKQE  177 (207)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999887754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.95  E-value=1.4e-28  Score=172.79  Aligned_cols=151  Identities=20%  Similarity=0.166  Sum_probs=118.9

Q ss_pred             ccccCCCCCceeeeece-----eeeeeeeeEEEEEEEE----C-CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            2 LRVKQPYCTSCTLVKFY-----LLFLLLVRFNVEKVQY----K-NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-----~~~~~t~~~~~~~~~~----~-~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +++.+++|||||++++.     ..+.+|.+........    + .+.+.+|||||++.+..++..+++.+|++|+|||++
T Consensus        16 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~   95 (218)
T 4djt_A           16 LIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVT   95 (218)
T ss_dssp             EECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETT
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCC
Confidence            57799999999999873     4556777766555443    2 288999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      +..++..+..|+..+.... ..+.|+++|+||+|+.+..  ...+.. .+    ....+++++++||++|.|++++|+++
T Consensus        96 ~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~~Sa~~g~gv~~l~~~l  169 (218)
T 4djt_A           96 SRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVM-EV----LKGKNYEYFEISAKTAHNFGLPFLHL  169 (218)
T ss_dssp             CHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHH-HH----TTTCCCEEEEEBTTTTBTTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHH-HH----HHHcCCcEEEEecCCCCCHHHHHHHH
Confidence            9999999999988875532 2358999999999997532  222222 22    23456789999999999999999999


Q ss_pred             HHHHHhhhc
Q 030931          150 ASTLKEMRA  158 (169)
Q Consensus       150 ~~~~~~~~~  158 (169)
                      .+.+.+...
T Consensus       170 ~~~~~~~~~  178 (218)
T 4djt_A          170 ARIFTGRPD  178 (218)
T ss_dssp             HHHHHCCTT
T ss_pred             HHHHhcccc
Confidence            999887653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.95  E-value=1.6e-29  Score=174.00  Aligned_cols=149  Identities=17%  Similarity=0.240  Sum_probs=114.0

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCch-hhHHhhccCCCEEEEEEECC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLR-PLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~-~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +++.+++|||||+++|     ...+.||++.++  ..+..+  .+.+.+|||||++++. .++..+++.+|++|+|||++
T Consensus        25 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~  104 (189)
T 1z06_A           25 VIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMT  104 (189)
T ss_dssp             EECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETT
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECc
Confidence            5678999999999986     345667777443  445554  4789999999999988 88999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccC---CCHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKG---DGLYEGL  146 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~gi~~~~  146 (169)
                      +..++..+..|+..+.+.....+.|+++|+||+|+.+..  ..++... +.    ...+++++++||+++   .|++++|
T Consensus       105 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~~~~~i~~l~  179 (189)
T 1z06_A          105 NMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK-FA----DTHSMPLFETSAKNPNDNDHVEAIF  179 (189)
T ss_dssp             CHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH-HH----HHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHH-HH----HHcCCEEEEEeCCcCCcccCHHHHH
Confidence            999999999999888765444689999999999996432  2222221 11    123356999999999   9999999


Q ss_pred             HHHHHHHHh
Q 030931          147 DWLASTLKE  155 (169)
Q Consensus       147 ~~l~~~~~~  155 (169)
                      +++++.+.+
T Consensus       180 ~~l~~~i~~  188 (189)
T 1z06_A          180 MTLAHKLKS  188 (189)
T ss_dssp             HHHC-----
T ss_pred             HHHHHHHhh
Confidence            999887643

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.95  E-value=7.7e-28  Score=163.82  Aligned_cols=148  Identities=8%  Similarity=0.056  Sum_probs=109.4

Q ss_pred             ccccCCCCCceeeeece----eeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh
Q 030931            2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE   74 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~   74 (169)
                      +++.+++|||||+++|.    ..+.||.+..+ ..+..  ..+.+++|||||+++     ..+++++|++++|||+++++
T Consensus        12 ~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~   86 (178)
T 2iwr_A           12 VLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDEN   86 (178)
T ss_dssp             EECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHH
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHH
Confidence            57789999999999872    22567777543 33444  357899999999986     45788999999999999999


Q ss_pred             hHHHHHHHHHHHhc--CCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931           75 RIGKAKQEFQAIIK--DPFMLNSVILVFANKQDMKG----AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  148 (169)
Q Consensus        75 ~~~~~~~~~~~~~~--~~~~~~~piivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  148 (169)
                      +++.+..|+..+..  ....++.|+++|+||+|+.+    ....++......    ...+++++++||++|.|++++|++
T Consensus        87 s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~lf~~  162 (178)
T 2iwr_A           87 SFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA----DMKRCSYYETXATYGLNVDRVFQE  162 (178)
T ss_dssp             HHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH----HHSSEEEEEEBTTTTBTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH----hhcCCeEEEEeccccCCHHHHHHH
Confidence            99999986544432  22235799999999999842    223333322111    112467999999999999999999


Q ss_pred             HHHHHHhhhc
Q 030931          149 LASTLKEMRA  158 (169)
Q Consensus       149 l~~~~~~~~~  158 (169)
                      +.+.+.+...
T Consensus       163 l~~~~~~~~~  172 (178)
T 2iwr_A          163 VAQKVVTLRK  172 (178)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9998877643

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.95  E-value=3.3e-28  Score=167.93  Aligned_cols=149  Identities=16%  Similarity=0.196  Sum_probs=113.6

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+++|||||++++     ...+.||.+.++  ..+..+  .+.+.+|||||++++..++..+++.+|++|+|||+++
T Consensus        31 vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~  110 (192)
T 2il1_A           31 IIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK  110 (192)
T ss_dssp             EECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTC
T ss_pred             EECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC
Confidence            5678999999999987     344566766443  445554  4789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      ..+++.+..|+..+... ...+.|+++|+||+|+.+.  ...++......    ...+++++++||++|.|++++|+++.
T Consensus       111 ~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~----~~~~~~~~~~SA~~g~gi~~l~~~l~  185 (192)
T 2il1_A          111 KETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQ----QITGMRFCEASAKDNFNVDEIFLKLV  185 (192)
T ss_dssp             HHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH----TSTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH----hcCCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999998888776442 2247999999999998643  22233222111    11246799999999999999999999


Q ss_pred             HHHHh
Q 030931          151 STLKE  155 (169)
Q Consensus       151 ~~~~~  155 (169)
                      +.+.+
T Consensus       186 ~~i~~  190 (192)
T 2il1_A          186 DDILK  190 (192)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98765

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.95  E-value=4.2e-28  Score=168.26  Aligned_cols=149  Identities=14%  Similarity=0.093  Sum_probs=112.9

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||+++|     ...+.||.+..+. .+...  .+.+++|||||++++..++..+++++|++++|||++++
T Consensus        25 ~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~  104 (201)
T 2q3h_A           25 LVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSP  104 (201)
T ss_dssp             EECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCH
Confidence            5678999999999976     4566777775543 34444  46788999999999999999999999999999999999


Q ss_pred             hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCCCCCcee-EEEEeeec
Q 030931           74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGA--------------MTPMEVCEGLGLFDLKNRKW-HIQGTCAL  137 (169)
Q Consensus        74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~  137 (169)
                      .++..+. .|+..+....  ++.|+++|+||+|+.+.              ...++.....     ...+. +++++||+
T Consensus       105 ~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~Sa~  177 (201)
T 2q3h_A          105 SSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA-----EEIKAASYIECSAL  177 (201)
T ss_dssp             HHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH-----HHHTCSEEEECCTT
T ss_pred             HHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHH-----HhcCCcEEEEEecC
Confidence            9999987 6887775532  48999999999998642              1111111110     11223 79999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhh
Q 030931          138 KGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       138 ~~~gi~~~~~~l~~~~~~~~  157 (169)
                      +|.|++++|+++.+.+.+.+
T Consensus       178 ~g~gi~~l~~~l~~~~~~~~  197 (201)
T 2q3h_A          178 TQKNLKEVFDAAIVAGIQYS  197 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhccc
Confidence            99999999999999887765

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2.9e-28  Score=168.61  Aligned_cols=150  Identities=15%  Similarity=0.121  Sum_probs=118.2

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE-EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||++++     ...+.||.+..+.. +..  ..+.+.+|||||++. ...+..+++.++++++|||++++
T Consensus        33 v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~  111 (196)
T 2atv_A           33 IFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDR  111 (196)
T ss_dssp             EECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCH
Confidence            5678999999999976     44567777765533 344  458899999999998 78889999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCC-CHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGD-GLYEGLDWLA  150 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~~~~l~  150 (169)
                      ++++.+..|+..+.......+.|+++|+||+|+.+.  ...++.....     ...+++++++||++|. |++++|++++
T Consensus       112 ~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~g~~gi~~l~~~l~  186 (196)
T 2atv_A          112 GSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLA-----TELACAFYECSACTGEGNITEIFYELC  186 (196)
T ss_dssp             HHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTSEEEECCTTTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHH-----HHhCCeEEEECCCcCCcCHHHHHHHHH
Confidence            999999998888766433458999999999998653  2222222211     1234679999999999 9999999999


Q ss_pred             HHHHhhh
Q 030931          151 STLKEMR  157 (169)
Q Consensus       151 ~~~~~~~  157 (169)
                      +.+.+.+
T Consensus       187 ~~i~~~~  193 (196)
T 2atv_A          187 REVRRRR  193 (196)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhc
Confidence            9887654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.95  E-value=9.2e-29  Score=168.57  Aligned_cols=152  Identities=13%  Similarity=0.139  Sum_probs=106.1

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC---CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK---NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +++.+|+|||||++++     ...+.||.+.++  ..+...   .+.+.+|||||++.+...+..+++.+|++++|||++
T Consensus        13 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~   92 (182)
T 1ky3_A           13 ILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVT   92 (182)
T ss_dssp             EECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETT
T ss_pred             EECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECC
Confidence            5678999999999976     455667776443  334433   589999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCC---CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDP---FMLNSVILVFANKQDMKGA---MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      ++.+++.+..|+..+....   ...+.|+++|+||+|+.+.   ...++......    ...+++++++||++|.|++++
T Consensus        93 ~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~~l  168 (182)
T 1ky3_A           93 NASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK----SLGDIPLFLTSAKNAINVDTA  168 (182)
T ss_dssp             CHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH----HTTSCCEEEEBTTTTBSHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH----hcCCCeEEEEecCCCCCHHHH
Confidence            9999999999988776522   2357899999999998532   22233222111    123456999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030931          146 LDWLASTLKEMR  157 (169)
Q Consensus       146 ~~~l~~~~~~~~  157 (169)
                      |+++.+.+.+..
T Consensus       169 ~~~l~~~~~~~~  180 (182)
T 1ky3_A          169 FEEIARSALQQN  180 (182)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999887654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.95  E-value=1.1e-27  Score=166.03  Aligned_cols=148  Identities=19%  Similarity=0.231  Sum_probs=117.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEECC--------------------------------------
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQYKN--------------------------------------   36 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~~~--------------------------------------   36 (169)
                      +++.+++|||||++++     .+.+.||.+..+.  .+..++                                      
T Consensus        12 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (208)
T 3clv_A           12 LLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLC   91 (208)
T ss_dssp             EECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCCTTTC
T ss_pred             EECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCccc
Confidence            5678999999999976     4566778775443  344333                                      


Q ss_pred             -EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-CCCHhH
Q 030931           37 -VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG-AMTPME  114 (169)
Q Consensus        37 -~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~-~~~~~~  114 (169)
                       +.+.+|||||++.+...+..+++.+|++++|||++++.++..+..|+..+....   +.|+++|+||+|+.. ....++
T Consensus        92 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~~~~~~~~  168 (208)
T 3clv_A           92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNKFQVDILE  168 (208)
T ss_dssp             EEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-CCSCHHH
T ss_pred             eeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCcccccCCHHH
Confidence             899999999999999999999999999999999999999999999998886533   389999999999432 233344


Q ss_pred             HHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          115 VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      +....     ...+++++++||++|.|++++|+++.+.+.++.
T Consensus       169 ~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          169 VQKYA-----QDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             HHHHH-----HHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-----HHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            33322     223467999999999999999999999887653

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.95  E-value=2.1e-28  Score=169.79  Aligned_cols=148  Identities=18%  Similarity=0.254  Sum_probs=107.4

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+++|||||++++     ...+.||.+.++  ..+..  ..+.+++|||||++.+...+..+++.+|++|+|||+++
T Consensus        33 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~  112 (199)
T 2p5s_A           33 LAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTC  112 (199)
T ss_dssp             EESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTC
T ss_pred             EECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCC
Confidence            5678999999999986     345667777543  33444  35789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC--------CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG--------AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      ..+++.+..|+..+.... ..+.|+++|+||+|+.+        ....++... +    ....+++++++||++|.|+++
T Consensus       113 ~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~~SA~~g~gv~e  186 (199)
T 2p5s_A          113 EKSFLNIREWVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEK-L----AMTYGALFCETSAKDGSNIVE  186 (199)
T ss_dssp             HHHHHTHHHHHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHH-H----HHHHTCEEEECCTTTCTTHHH
T ss_pred             hHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHHHH-H----HHHcCCeEEEeeCCCCCCHHH
Confidence            999999999988775422 24789999999999852        112222111 1    123346799999999999999


Q ss_pred             HHHHHHHHHHh
Q 030931          145 GLDWLASTLKE  155 (169)
Q Consensus       145 ~~~~l~~~~~~  155 (169)
                      +|+++++.+.+
T Consensus       187 l~~~l~~~i~~  197 (199)
T 2p5s_A          187 AVLHLAREVKK  197 (199)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.95  E-value=1.7e-29  Score=173.83  Aligned_cols=148  Identities=14%  Similarity=0.062  Sum_probs=111.9

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||+++|     ...+.||++..+. .+..  ..+.+++|||+|++++..+ ..+++.++++++|||++++
T Consensus        26 vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~  104 (187)
T 3c5c_A           26 ILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSR  104 (187)
T ss_dssp             EECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCH
T ss_pred             EECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCH
Confidence            5778999999999976     4567788886543 2333  4688999999999988875 6689999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeee-ccCCCHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPF--MLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCA-LKGDGLYEGLDW  148 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~gi~~~~~~  148 (169)
                      ++|+.+..|+..+.....  ..+.|+++|+||+|+.+.  ...++.....     ...+++++++|| ++|.|++++|++
T Consensus       105 ~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~g~gv~~lf~~  179 (187)
T 3c5c_A          105 QSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA-----GRFGCLFFEVSACLDFEHVQHVFHE  179 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHH-----HHHTCEEEECCSSSCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHH-----HHcCCcEEEEeecCccccHHHHHHH
Confidence            999999999888865311  247899999999998642  2323222211     223457999999 899999999999


Q ss_pred             HHHHHHh
Q 030931          149 LASTLKE  155 (169)
Q Consensus       149 l~~~~~~  155 (169)
                      +++.+.+
T Consensus       180 l~~~i~~  186 (187)
T 3c5c_A          180 AVREARR  186 (187)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.95  E-value=3.4e-28  Score=166.69  Aligned_cols=147  Identities=13%  Similarity=0.104  Sum_probs=114.0

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||+++|     ...+.||.+..+. .+..  ..+.+.+|||||++.+..++..+++.++++++|||++++
T Consensus        12 v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   91 (184)
T 1m7b_A           12 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP   91 (184)
T ss_dssp             EEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCH
Confidence            5779999999999976     4556788876553 2333  468899999999999999999999999999999999999


Q ss_pred             hhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCCCCCce-eEEEEeeec
Q 030931           74 ERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGA--------------MTPMEVCEGLGLFDLKNRK-WHIQGTCAL  137 (169)
Q Consensus        74 ~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~  137 (169)
                      .++..+ ..|+..+.+..  ++.|+++|+||+|+.+.              .+.++.....     ...+ ++|+++||+
T Consensus        92 ~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~Sa~  164 (184)
T 1m7b_A           92 ETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA-----KQIGAATYIECSAL  164 (184)
T ss_dssp             HHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH-----HHHTCSEEEECBTT
T ss_pred             HHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHH-----HHcCCcEEEEeeec
Confidence            999998 67877765432  57999999999999632              2222211111     1112 479999999


Q ss_pred             -cCCCHHHHHHHHHHHHHh
Q 030931          138 -KGDGLYEGLDWLASTLKE  155 (169)
Q Consensus       138 -~~~gi~~~~~~l~~~~~~  155 (169)
                       ++.|++++|+++.+.+.+
T Consensus       165 ~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          165 QSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TBHHHHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence             689999999999988764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.95  E-value=1.6e-28  Score=171.78  Aligned_cols=150  Identities=14%  Similarity=0.118  Sum_probs=114.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||+++|     ...+.||.+..+. .+..  ..+.+++|||||++++..++..+++.+|++|+|||++++
T Consensus        14 i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~   93 (212)
T 2j0v_A           14 TVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISK   93 (212)
T ss_dssp             EEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCH
Confidence            5778999999999976     4566778875543 2333  458999999999999999999999999999999999999


Q ss_pred             hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----------CHhHHHhhhCCCCCCCce-eEEEEeeeccCCC
Q 030931           74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAM----------TPMEVCEGLGLFDLKNRK-WHIQGTCALKGDG  141 (169)
Q Consensus        74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  141 (169)
                      .+++.+. .|+..+....  ++.|+++|+||+|+.+..          ..++.....     ...+ .+++++||++|.|
T Consensus        94 ~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~Sa~~g~g  166 (212)
T 2j0v_A           94 ASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR-----KQIGAAAYIECSSKTQQN  166 (212)
T ss_dssp             HHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH-----HHHTCSEEEECCTTTCTT
T ss_pred             HHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH-----HHcCCceEEEccCCCCCC
Confidence            9999987 7887775432  479999999999986431          222211111     1122 3799999999999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 030931          142 LYEGLDWLASTLKEMRA  158 (169)
Q Consensus       142 i~~~~~~l~~~~~~~~~  158 (169)
                      ++++|+++.+.+.+...
T Consensus       167 i~~l~~~l~~~~~~~~~  183 (212)
T 2j0v_A          167 VKAVFDTAIKVVLQPPR  183 (212)
T ss_dssp             HHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            99999999998887643

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2.8e-29  Score=169.58  Aligned_cols=150  Identities=16%  Similarity=0.118  Sum_probs=114.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEEE-EE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKV-QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~-~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||++++     ...+.||.+..+... ..  ..+.+.+|||||++.+..++..+++.+|++++|||++++
T Consensus         8 v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   87 (172)
T 2erx_A            8 VFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSR   87 (172)
T ss_dssp             EECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCH
Confidence            5678999999999976     345677777655432 22  457899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      .+++....|+..+.+. ...++.|+++|+||+|+.+..  ...+... +    ....+++++++||++|.|++++|+++.
T Consensus        88 ~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~l~~~l~  162 (172)
T 2erx_A           88 QSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-L----ARTWKCAFMETSAKLNHNVKELFQELL  162 (172)
T ss_dssp             HHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHH-H----HHHhCCeEEEecCCCCcCHHHHHHHHH
Confidence            9999888887766542 223578999999999986432  2222211 1    122345799999999999999999999


Q ss_pred             HHHHhh
Q 030931          151 STLKEM  156 (169)
Q Consensus       151 ~~~~~~  156 (169)
                      +.+.++
T Consensus       163 ~~~~~~  168 (172)
T 2erx_A          163 NLEKRR  168 (172)
T ss_dssp             HTCCSS
T ss_pred             HHHhhh
Confidence            866543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2e-28  Score=169.37  Aligned_cols=151  Identities=12%  Similarity=0.102  Sum_probs=116.2

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEEE-EE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKV-QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~-~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+++|||||++++     ...+.||.+..+... ..  ..+.+.+|||||++.+..++..+++.+|++++|||++++
T Consensus        13 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   92 (199)
T 2gf0_A           13 VFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSK   92 (199)
T ss_dssp             EEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCH
Confidence            5678999999999986     445667777555432 22  457899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      .+++.+..|+..+.... ...+.|+++|+||+|+.+.. ..++... +    ....+++++++||++|.|++++|+++.+
T Consensus        93 ~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  167 (199)
T 2gf0_A           93 QSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQA-V----AQEWKCAFMETSAKMNYNVKELFQELLT  167 (199)
T ss_dssp             HHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHH-H----HHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHH-H----HHHhCCeEEEEecCCCCCHHHHHHHHHH
Confidence            99998888776654421 13478999999999997532 2222221 1    1223457999999999999999999999


Q ss_pred             HHHhhh
Q 030931          152 TLKEMR  157 (169)
Q Consensus       152 ~~~~~~  157 (169)
                      .+.++.
T Consensus       168 ~~~~~~  173 (199)
T 2gf0_A          168 LETRRN  173 (199)
T ss_dssp             HCSSSC
T ss_pred             HHhhhh
Confidence            876654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.95  E-value=8e-28  Score=165.43  Aligned_cols=151  Identities=13%  Similarity=0.145  Sum_probs=106.8

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||++++     ...+.+|.+..+ ..+...  .+.+.+|||||++.+..++..+++.++++++|||+++.
T Consensus        26 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  105 (190)
T 3con_A           26 VVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNS  105 (190)
T ss_dssp             EECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCH
T ss_pred             EECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCH
Confidence            5678999999999976     344455665443 234443  47799999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      .++..+..|+..+.......+.|+++|+||+|+.+. ...++..+..     ...+++++++||++|.|++++|+++.+.
T Consensus       106 ~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  180 (190)
T 3con_A          106 KSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA-----KSYGIPFIETSAKTRQGVEDAFYTLVRE  180 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH-----HHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999988888765433357999999999998652 2223322221     1233469999999999999999999998


Q ss_pred             HHhhh
Q 030931          153 LKEMR  157 (169)
Q Consensus       153 ~~~~~  157 (169)
                      +.+.+
T Consensus       181 ~~~~~  185 (190)
T 3con_A          181 IRQYR  185 (190)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            87754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.95  E-value=4.1e-29  Score=169.89  Aligned_cols=148  Identities=16%  Similarity=0.240  Sum_probs=115.6

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||++++     ...+.||.+.++  ..+..+  .+.+.+|||||++.+...+..+++.+|++++|||+++
T Consensus        19 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   98 (179)
T 2y8e_A           19 FLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN   98 (179)
T ss_dssp             EEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTC
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC
Confidence            5678999999999976     455667777544  334444  4789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.++..+..|+..+.... ..+.|+++|+||+|+.+..  ..++.....     ...+++++++||++|.|++++|+++.
T Consensus        99 ~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~  172 (179)
T 2y8e_A           99 TNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKA-----KELNVMFIETSAKAGYNVKQLFRRVA  172 (179)
T ss_dssp             HHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHH-----HHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHH-----HHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999999988876532 2479999999999986432  222222211     22346799999999999999999998


Q ss_pred             HHHHh
Q 030931          151 STLKE  155 (169)
Q Consensus       151 ~~~~~  155 (169)
                      +.+.+
T Consensus       173 ~~~~~  177 (179)
T 2y8e_A          173 AALPG  177 (179)
T ss_dssp             HTCC-
T ss_pred             HHHhh
Confidence            86543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=9.3e-28  Score=167.76  Aligned_cols=150  Identities=25%  Similarity=0.350  Sum_probs=117.7

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+++|||||++++     ...+.||++..+  ..+..++  +.+.+|||||++.+..++..+++.+|++++|||+++
T Consensus        25 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~  104 (213)
T 3cph_A           25 LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD  104 (213)
T ss_dssp             EECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTC
T ss_pred             EECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCC
Confidence            5678999999999976     455667777443  4455555  789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      +.+++.+..|+..+.... ..+.|+++|+||+|+.... ..++... +.    ...+++++++||++|.|++++|+++.+
T Consensus       105 ~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~l~~~l~~  178 (213)
T 3cph_A          105 ERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEA-LA----KELGIPFIESSAKNDDNVNEIFFTLAK  178 (213)
T ss_dssp             HHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHH-HH----HHHTCCEEECBTTTTBSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHH-HH----HHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999988876532 2478999999999995322 2222221 11    122346999999999999999999999


Q ss_pred             HHHhhh
Q 030931          152 TLKEMR  157 (169)
Q Consensus       152 ~~~~~~  157 (169)
                      .+.+..
T Consensus       179 ~~~~~~  184 (213)
T 3cph_A          179 LIQEKI  184 (213)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.95  E-value=9.3e-28  Score=167.47  Aligned_cols=147  Identities=13%  Similarity=0.104  Sum_probs=114.1

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+++|||||+++|     ...+.||.+..+. .+..  ..+.+++|||||++.+..++..+++.++++|+|||++++
T Consensus        33 vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~  112 (205)
T 1gwn_A           33 VVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP  112 (205)
T ss_dssp             EEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCH
Confidence            5779999999999976     4556788876553 2333  468999999999999999999999999999999999999


Q ss_pred             hhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCCCCCce-eEEEEeeec
Q 030931           74 ERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGA--------------MTPMEVCEGLGLFDLKNRK-WHIQGTCAL  137 (169)
Q Consensus        74 ~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~  137 (169)
                      .+|..+ ..|+..+.+..  ++.|+++|+||+|+.+.              .+.++.....     ...+ ++|++|||+
T Consensus       113 ~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~SAk  185 (205)
T 1gwn_A          113 ETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA-----KQIGAATYIECSAL  185 (205)
T ss_dssp             HHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH-----HHHTCSEEEECCTT
T ss_pred             HHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHH-----HHcCCCEEEEeeec
Confidence            999998 67877775432  47999999999998632              1222211111     1112 479999999


Q ss_pred             -cCCCHHHHHHHHHHHHHh
Q 030931          138 -KGDGLYEGLDWLASTLKE  155 (169)
Q Consensus       138 -~~~gi~~~~~~l~~~~~~  155 (169)
                       ++.|++++|+++++.+.+
T Consensus       186 ~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          186 QSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHhh
Confidence             689999999999988764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.95  E-value=9.6e-28  Score=168.31  Aligned_cols=154  Identities=15%  Similarity=0.098  Sum_probs=98.4

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||+++|     ...+.||.+..+. .+..  ..+.+.+|||||++.+..++..+++.+|++++|||++++
T Consensus        39 vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  118 (214)
T 2j1l_A           39 LVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSP  118 (214)
T ss_dssp             EEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCH
T ss_pred             EECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCH
Confidence            5678999999999987     3455677765442 3344  456899999999999999999999999999999999999


Q ss_pred             hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCCCCCcee-EEEEeeeccCCCH
Q 030931           74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---------LFDLKNRKW-HIQGTCALKGDGL  142 (169)
Q Consensus        74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~Sa~~~~gi  142 (169)
                      .+|+.+. .|+..+....  ++.|+++|+||+|+.+.....+......         .......++ +++++||++|.|+
T Consensus       119 ~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi  196 (214)
T 2j1l_A          119 NSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNV  196 (214)
T ss_dssp             HHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred             HHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCH
Confidence            9999986 6877775432  5789999999999965321111100000         000112233 7999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 030931          143 YEGLDWLASTLKEMR  157 (169)
Q Consensus       143 ~~~~~~l~~~~~~~~  157 (169)
                      +++|+++.+.+.+.+
T Consensus       197 ~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          197 HAVFQEAAEVALSSR  211 (214)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999887654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2.5e-27  Score=165.33  Aligned_cols=154  Identities=16%  Similarity=0.169  Sum_probs=109.8

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+++|||||++++     ...+.||.+..+. .+...  .+.+.+|||||++.+..++..+++.+|++++|||++++
T Consensus        30 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  109 (207)
T 2fv8_A           30 VVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSP  109 (207)
T ss_dssp             EEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCH
T ss_pred             EECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCH
Confidence            5678999999999976     3455677775542 34443  47899999999999999999999999999999999999


Q ss_pred             hhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCC---------CCCcee-EEEEeeeccCCCH
Q 030931           74 ERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD---------LKNRKW-HIQGTCALKGDGL  142 (169)
Q Consensus        74 ~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~Sa~~~~gi  142 (169)
                      .++..+ ..|+..+....  ++.|+++|+||+|+.+.....+....+....         ....+. +++++||++|.|+
T Consensus       110 ~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi  187 (207)
T 2fv8_A          110 DSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGV  187 (207)
T ss_dssp             HHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred             HHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCH
Confidence            999988 56776664422  5799999999999864321111111110000         011122 7999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 030931          143 YEGLDWLASTLKEMR  157 (169)
Q Consensus       143 ~~~~~~l~~~~~~~~  157 (169)
                      +++|+++.+.+.+.+
T Consensus       188 ~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          188 REVFETATRAALQKR  202 (207)
T ss_dssp             HHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999887653

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.95  E-value=6.3e-29  Score=170.46  Aligned_cols=151  Identities=13%  Similarity=0.160  Sum_probs=110.5

Q ss_pred             ccccCCCCCceeeeece-------eeeeeeeeEEEEEEEE-------CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEE
Q 030931            2 LRVKQPYCTSCTLVKFY-------LLFLLLVRFNVEKVQY-------KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   67 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-------~~~~~t~~~~~~~~~~-------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   67 (169)
                      |++.+|+|||||+++|.       ..+.||++.++.....       ..+.+++|||+|++++..+++.++++++++++|
T Consensus         7 ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   86 (184)
T 2zej_A            7 IVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAV   86 (184)
T ss_dssp             EESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEE
T ss_pred             EECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEE
Confidence            67899999999999873       3467888877654332       478899999999999999999999999999999


Q ss_pred             EECCCh-hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCCCCCcee----EEEEeeecc
Q 030931           68 VDSLDR-ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM----EVCEGLGLFDLKNRKW----HIQGTCALK  138 (169)
Q Consensus        68 ~d~~~~-~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~----~~~~~Sa~~  138 (169)
                      ||++++ .+++.+..|+..+....  ++.|+++|+||+|+.+.....    +....+.    ...++    +++++||++
T Consensus        87 ~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           87 YDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELL----NKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTT----TCTTSCEEEEEEECCTTS
T ss_pred             EeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHH----HhcCCcchhheEEEeccc
Confidence            999987 57888999998875532  478999999999986432211    1112221    22233    499999999


Q ss_pred             CC-CHHHHHHHHHHHHHhhhc
Q 030931          139 GD-GLYEGLDWLASTLKEMRA  158 (169)
Q Consensus       139 ~~-gi~~~~~~l~~~~~~~~~  158 (169)
                      +. |++++++.+.+.+.+.+.
T Consensus       161 ~~~~~~~l~~~i~~~~~~~~~  181 (184)
T 2zej_A          161 ESDALAKLRKTIINESLNFKI  181 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHCC--
T ss_pred             CchhHHHHHHHHHHHHhcccc
Confidence            97 999999999988877543

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.94  E-value=1.7e-28  Score=167.44  Aligned_cols=147  Identities=15%  Similarity=0.146  Sum_probs=101.5

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE---EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK---VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||+++|     ...+.||.+..+..   ++...+.+++|||||++++..++..+++++|++++|||++++
T Consensus        13 v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   92 (182)
T 3bwd_D           13 TVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK   92 (182)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCH
Confidence            5678999999999976     45566777644321   333567788999999999999999999999999999999999


Q ss_pred             hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCC------------CHhHHHhhhCCCCCCCcee-EEEEeeeccC
Q 030931           74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAM------------TPMEVCEGLGLFDLKNRKW-HIQGTCALKG  139 (169)
Q Consensus        74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  139 (169)
                      .+++.+. .|+..+....  ++.|+++|+||+|+.+..            ..++... +    ....+. +++++||++|
T Consensus        93 ~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~-~----~~~~~~~~~~~~Sa~~~  165 (182)
T 3bwd_D           93 ASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE-L----KKLIGAPAYIECSSKSQ  165 (182)
T ss_dssp             HHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH-H----HHHHTCSEEEECCTTTC
T ss_pred             HHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH-H----HHHcCCCEEEEEECCCC
Confidence            9999987 6877775432  479999999999986432            1111111 1    112233 7999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 030931          140 DGLYEGLDWLASTLKE  155 (169)
Q Consensus       140 ~gi~~~~~~l~~~~~~  155 (169)
                      .|++++|+++.+.+.+
T Consensus       166 ~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          166 ENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TTHHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999987653

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=2.1e-28  Score=179.82  Aligned_cols=151  Identities=17%  Similarity=0.087  Sum_probs=109.5

Q ss_pred             ccccCCCCCceeeeec----ee----eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchh---hHHhhccCCCEEEEEEEC
Q 030931            2 LRVKQPYCTSCTLVKF----YL----LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP---LWRHYFNNTDGLIYVVDS   70 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f----~~----~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~~~ii~v~d~   70 (169)
                      |++..|+|||||++++    .+    .+.||+|+++..++ ..++++||||+||++|+.   .+..|+++++++|+|||+
T Consensus         4 llGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Di   82 (331)
T 3r7w_B            4 LMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDS   82 (331)
T ss_dssp             EECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCC
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEEC
Confidence            6788999999999864    22    25789998877663 568999999999999974   478999999999999999


Q ss_pred             CCh--hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCCCCC----ceeEEEEeeeccCC
Q 030931           71 LDR--ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDLKN----RKWHIQGTCALKGD  140 (169)
Q Consensus        71 ~~~--~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~  140 (169)
                      +++  +.+.....|+..+.+.  .++.|++++|||+|+.+...    .+++....+...++.    .++.|++|||++ .
T Consensus        83 td~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~  159 (331)
T 3r7w_B           83 QDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-H  159 (331)
T ss_dssp             SSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-S
T ss_pred             CchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-C
Confidence            987  2222333334333222  25899999999999965321    133444333233332    578999999998 5


Q ss_pred             CHHHHHHHHHHHHHhh
Q 030931          141 GLYEGLDWLASTLKEM  156 (169)
Q Consensus       141 gi~~~~~~l~~~~~~~  156 (169)
                      ||.+.|..+++.+.+.
T Consensus       160 nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          160 SIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             HHHHHHHHHHTTSSTT
T ss_pred             cHHHHHHHHHHHHHhh
Confidence            8999999998766543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.94  E-value=2.9e-29  Score=174.06  Aligned_cols=146  Identities=23%  Similarity=0.362  Sum_probs=107.5

Q ss_pred             ccccCCCCCceeeeece-----eeeeeeee--EEEEEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKFY-----LLFLLLVR--FNVEKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-----~~~~~t~~--~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+++|||||++++.     ..+.||.+  .....+..++  +.+.+|||||++.+..++..+++.+|++|+|||+++
T Consensus        38 vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~  117 (199)
T 3l0i_B           38 LIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD  117 (199)
T ss_dssp             EECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCC
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCC
Confidence            56789999999999873     33445555  4445555554  789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-----HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-----PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                      +.+++.+..|+..+.... ..+.|+++|+||+|+.+...     ..++..        ..+++++++||++|.|++++|+
T Consensus       118 ~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~--------~~~~~~~~vSA~~g~gv~~l~~  188 (199)
T 3l0i_B          118 QESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFAD--------SLGIPFLETSAKNATNVEQSFM  188 (199)
T ss_dssp             SHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHH--------TTTCCBCCCCC---HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHH--------HcCCeEEEEECCCCCCHHHHHH
Confidence            999999999998886533 35799999999999864321     122222        2345699999999999999999


Q ss_pred             HHHHHHHhh
Q 030931          148 WLASTLKEM  156 (169)
Q Consensus       148 ~l~~~~~~~  156 (169)
                      ++.+.+.++
T Consensus       189 ~l~~~l~~~  197 (199)
T 3l0i_B          189 TMAAEIKKR  197 (199)
T ss_dssp             HHTTTTTTT
T ss_pred             HHHHHHHHh
Confidence            998876543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.94  E-value=3e-27  Score=165.48  Aligned_cols=150  Identities=18%  Similarity=0.184  Sum_probs=107.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEEC---CEEEEEEEcCCCCCchh-hHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQYK---NVIFTVWDVGGQEKLRP-LWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~-~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||+++|     .+.+ ++.+.++..+..+   .+.+++|||||++.+.. ++..+++.++++++|||+++
T Consensus        12 vvG~~~~GKTsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~   90 (214)
T 2fh5_B           12 FVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA   90 (214)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT
T ss_pred             EECCCCCCHHHHHHHHhCCCccccc-CCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCC
Confidence            5678999999999987     2333 3444555556665   78999999999999988 88899999999999999988


Q ss_pred             hh-hHHHHHHHHHHHhcC--CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC-----------------------CCCCC-
Q 030931           73 RE-RIGKAKQEFQAIIKD--PFMLNSVILVFANKQDMKGAMTPMEVCEGLG-----------------------LFDLK-  125 (169)
Q Consensus        73 ~~-~~~~~~~~~~~~~~~--~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-----------------------~~~~~-  125 (169)
                      .. ++.....++..++..  ....+.|+++|+||+|+.+....+++.+.+.                       ..... 
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~  170 (214)
T 2fh5_B           91 FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGK  170 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSC
T ss_pred             cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccC
Confidence            54 466666655554432  1234789999999999976554332222111                       00001 


Q ss_pred             --------Cc--eeEEEEeeeccC------CCHHHHHHHHHHH
Q 030931          126 --------NR--KWHIQGTCALKG------DGLYEGLDWLAST  152 (169)
Q Consensus       126 --------~~--~~~~~~~Sa~~~------~gi~~~~~~l~~~  152 (169)
                              ..  .++|++|||++|      .||+++|+++.+.
T Consensus       171 ~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          171 KGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             TTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                    11  678999999999      9999999999875

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.94  E-value=1.9e-27  Score=165.27  Aligned_cols=152  Identities=15%  Similarity=0.158  Sum_probs=112.4

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+++|||||+++|     ...+.||.+..+ ..+..  ..+.+.+|||||++++..++..+++.+|++++|||++++
T Consensus        30 vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  109 (201)
T 2gco_A           30 IVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP  109 (201)
T ss_dssp             EEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCH
Confidence            5678999999999976     455667777544 33444  347899999999999999999999999999999999999


Q ss_pred             hhHHHH-HHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC---------CCCCCcee-EEEEeeeccCCCH
Q 030931           74 ERIGKA-KQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL---------FDLKNRKW-HIQGTCALKGDGL  142 (169)
Q Consensus        74 ~~~~~~-~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~Sa~~~~gi  142 (169)
                      .++..+ ..|+..+....  ++.|+++|+||+|+.+.....+.......         ......+. +++++||++|.|+
T Consensus       110 ~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi  187 (201)
T 2gco_A          110 DSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGV  187 (201)
T ss_dssp             HHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred             HHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCH
Confidence            999988 56766664422  47999999999999754111111000000         00011223 7999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 030931          143 YEGLDWLASTLKE  155 (169)
Q Consensus       143 ~~~~~~l~~~~~~  155 (169)
                      +++|+++.+.+.+
T Consensus       188 ~~l~~~i~~~~l~  200 (201)
T 2gco_A          188 REVFEMATRAGLQ  200 (201)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.94  E-value=1.7e-27  Score=165.96  Aligned_cols=150  Identities=18%  Similarity=0.199  Sum_probs=110.7

Q ss_pred             ccccCCCCCceeeee-----ceeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVK-----FYLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~-----f~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||+++     |...+.||.+..+. .+..  ..+.+.+|||||++.+..++..+++.+|++++|||++++
T Consensus        35 vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  114 (204)
T 4gzl_A           35 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP  114 (204)
T ss_dssp             EEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred             EECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCH
Confidence            567899999999965     45667777775443 2333  567788999999999999999999999999999999999


Q ss_pred             hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------CCCCce-eEEEEeeeccCCCH
Q 030931           74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF---------DLKNRK-WHIQGTCALKGDGL  142 (169)
Q Consensus        74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~Sa~~~~gi  142 (169)
                      .++..+. .|+..+....  .+.|+++|+||+|+.+.....+........         .....+ .+++++||++|.|+
T Consensus       115 ~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi  192 (204)
T 4gzl_A          115 ASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL  192 (204)
T ss_dssp             HHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred             HHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCH
Confidence            9999987 6777765433  579999999999986542211111111000         001112 36999999999999


Q ss_pred             HHHHHHHHHHH
Q 030931          143 YEGLDWLASTL  153 (169)
Q Consensus       143 ~~~~~~l~~~~  153 (169)
                      +++|+++.+.+
T Consensus       193 ~~l~~~l~~~~  203 (204)
T 4gzl_A          193 KTVFDEAIRAV  203 (204)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.94  E-value=1.6e-28  Score=169.70  Aligned_cols=151  Identities=15%  Similarity=0.032  Sum_probs=108.2

Q ss_pred             ccccCCCCCceeeeecee------eeeeeeeEE--EEEEEEC--CEEEEEEEcCCCCC-chhhHHhhccCCCEEEEEEEC
Q 030931            2 LRVKQPYCTSCTLVKFYL------LFLLLVRFN--VEKVQYK--NVIFTVWDVGGQEK-LRPLWRHYFNNTDGLIYVVDS   70 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~------~~~~t~~~~--~~~~~~~--~~~~~i~D~~G~~~-~~~~~~~~~~~~~~ii~v~d~   70 (169)
                      |++.+++|||||+++|..      ...++.+.+  ...+..+  .+.+.+|||+|++. +..++..+++.++++++|||+
T Consensus        11 lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv   90 (192)
T 2cjw_A           11 LIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSI   90 (192)
T ss_dssp             EECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEET
T ss_pred             EECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEEC
Confidence            678999999999998842      122334433  2334443  46778999999876 556778889999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931           71 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  148 (169)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  148 (169)
                      +++.+|+.+..|+..+.+.....+.|+++|+||+|+...  ...++.. .+    ....+++|++|||++|.||+++|++
T Consensus        91 ~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~-~~----a~~~~~~~~e~SA~~g~~v~~lf~~  165 (192)
T 2cjw_A           91 TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR-AX----AVVFDXKFIETSAAVQHNVKELFEG  165 (192)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH-HH----HHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH-HH----HHHhCCceEEeccccCCCHHHHHHH
Confidence            999999999988877755333357999999999998542  2222111 11    1122357999999999999999999


Q ss_pred             HHHHHHhhh
Q 030931          149 LASTLKEMR  157 (169)
Q Consensus       149 l~~~~~~~~  157 (169)
                      +++.+....
T Consensus       166 l~~~~~~~~  174 (192)
T 2cjw_A          166 IVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhc
Confidence            999886554

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.94  E-value=2.1e-27  Score=162.45  Aligned_cols=154  Identities=18%  Similarity=0.171  Sum_probs=114.0

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||+++|     ...+.||.+..+. .+..  ..+.+++|||||++.+..++..+++.+|++++|||++++
T Consensus        10 ~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   89 (186)
T 1mh1_A           10 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSP   89 (186)
T ss_dssp             EECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCCh
Confidence            5678999999999765     5566777775442 2333  457788999999999999999999999999999999999


Q ss_pred             hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---------CCCCCCce-eEEEEeeeccCCCH
Q 030931           74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLG---------LFDLKNRK-WHIQGTCALKGDGL  142 (169)
Q Consensus        74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~Sa~~~~gi  142 (169)
                      .++.... .|+..+....  ++.|+++|+||+|+.+.....+......         .......+ ++++++||++|.|+
T Consensus        90 ~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  167 (186)
T 1mh1_A           90 ASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL  167 (186)
T ss_dssp             HHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred             hhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCH
Confidence            9999987 6777775432  3799999999999864311111000000         00001123 37999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 030931          143 YEGLDWLASTLKEMR  157 (169)
Q Consensus       143 ~~~~~~l~~~~~~~~  157 (169)
                      +++|+++.+.+.+..
T Consensus       168 ~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          168 KTVFDEAIRAVLCPP  182 (186)
T ss_dssp             HHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999887654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.89  E-value=3.1e-28  Score=169.42  Aligned_cols=150  Identities=18%  Similarity=0.206  Sum_probs=111.9

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE---EEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE---KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~---~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+|+|||||+++|     ...+.||.+..+.   .++...+.+++|||||++++...+..+++.+|++++|||++++
T Consensus        35 v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~  114 (204)
T 3th5_A           35 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP  114 (204)
Confidence            5678999999999876     4455666664332   2333567888999999999999999999999999999999999


Q ss_pred             hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh---------HHHhhhCCCCCCCcee-EEEEeeeccCCCH
Q 030931           74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM---------EVCEGLGLFDLKNRKW-HIQGTCALKGDGL  142 (169)
Q Consensus        74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi  142 (169)
                      .++.... .|+..+....  ++.|+++|+||+|+.+.....         .+............+. +++++||++|.|+
T Consensus       115 ~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi  192 (204)
T 3th5_A          115 ASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL  192 (204)
Confidence            9999887 6776664322  379999999999996532111         1111111122233444 7999999999999


Q ss_pred             HHHHHHHHHHH
Q 030931          143 YEGLDWLASTL  153 (169)
Q Consensus       143 ~~~~~~l~~~~  153 (169)
                      +++|+++.+.+
T Consensus       193 ~~l~~~l~~~i  203 (204)
T 3th5_A          193 KTVFDEAIRAV  203 (204)
Confidence            99999998764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.93  E-value=2.1e-27  Score=164.39  Aligned_cols=150  Identities=19%  Similarity=0.167  Sum_probs=106.8

Q ss_pred             CccccCCCCCceeeeeceee--eeeeeeEE--E--EEEE---ECCEEEEEEEcCCCCCchhhH---HhhccCCCEEEEEE
Q 030931            1 MLRVKQPYCTSCTLVKFYLL--FLLLVRFN--V--EKVQ---YKNVIFTVWDVGGQEKLRPLW---RHYFNNTDGLIYVV   68 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~--~~~t~~~~--~--~~~~---~~~~~~~i~D~~G~~~~~~~~---~~~~~~~~~ii~v~   68 (169)
                      ++++..++|||||++++...  ..+|.+..  .  ....   ...+.+++|||+|+++|....   ..++++++++|+||
T Consensus        24 ~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~  103 (196)
T 3llu_A           24 LLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVI  103 (196)
T ss_dssp             EEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEE
T ss_pred             EEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEE
Confidence            36778999999998855221  11333322  1  1222   356899999999999987776   89999999999999


Q ss_pred             ECCCh--hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHH----hhhCCCCCCCceeEEEEeeecc
Q 030931           69 DSLDR--ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----TPMEVC----EGLGLFDLKNRKWHIQGTCALK  138 (169)
Q Consensus        69 d~~~~--~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~  138 (169)
                      |+++.  +++..+..|+..+...  .++.|+++|+||+|+.+..    ...++.    ..+........+++|++|||++
T Consensus       104 d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~  181 (196)
T 3llu_A          104 DAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD  181 (196)
T ss_dssp             ETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS
T ss_pred             ECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech
Confidence            99987  6777777788776432  2589999999999986421    111221    1121111125568899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 030931          139 GDGLYEGLDWLASTL  153 (169)
Q Consensus       139 ~~gi~~~~~~l~~~~  153 (169)
                       .||+++|.++++.+
T Consensus       182 -~~v~~~f~~l~~~l  195 (196)
T 3llu_A          182 -HSIFEAFSKVVQKL  195 (196)
T ss_dssp             -THHHHHHHHHHHHT
T ss_pred             -hhHHHHHHHHHHHh
Confidence             99999999998764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.93  E-value=6e-26  Score=154.24  Aligned_cols=151  Identities=17%  Similarity=0.045  Sum_probs=109.1

Q ss_pred             ccccCCCCCceeeeece-----eeeeeeee--EEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh
Q 030931            2 LRVKQPYCTSCTLVKFY-----LLFLLLVR--FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE   74 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-----~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~   74 (169)
                      +++.+|+|||||+++|.     ..+.|+.+  +....+..++..+.+|||||++.+..++..+++.+|++++|+|+++..
T Consensus        13 v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~   92 (178)
T 2lkc_A           13 IMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGV   92 (178)
T ss_dssp             EESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCC
T ss_pred             EECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence            56789999999999872     33333333  444567778899999999999999999999999999999999998743


Q ss_pred             hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--CCCCc--eeEEEEeeeccCCCHHHHHHHHH
Q 030931           75 RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF--DLKNR--KWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      ..... .++..+..    .+.|+++|+||+|+.+. ..+++...+...  .....  .++++++||++|.|++++|+++.
T Consensus        93 ~~~~~-~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  166 (178)
T 2lkc_A           93 MPQTV-EAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMIL  166 (178)
T ss_dssp             CHHHH-HHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHH
T ss_pred             cHHHH-HHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHH
Confidence            22221 22333321    47899999999999753 333443333211  11122  26899999999999999999999


Q ss_pred             HHHHhhhc
Q 030931          151 STLKEMRA  158 (169)
Q Consensus       151 ~~~~~~~~  158 (169)
                      +.+...+.
T Consensus       167 ~~~~~~~~  174 (178)
T 2lkc_A          167 LVSEMEEL  174 (178)
T ss_dssp             HHHHHTTT
T ss_pred             Hhhhhhcc
Confidence            98877654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.93  E-value=1.6e-25  Score=158.39  Aligned_cols=153  Identities=14%  Similarity=0.038  Sum_probs=103.5

Q ss_pred             ccccCCCCCceeeeeceeeee-------eeeeEEEEEEEECCEEEEEEEcCCC------CCc---hhhHHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLFL-------LLVRFNVEKVQYKNVIFTVWDVGGQ------EKL---RPLWRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~-------~t~~~~~~~~~~~~~~~~i~D~~G~------~~~---~~~~~~~~~~~~~ii   65 (169)
                      |++.+|+|||||+++|.....       .|.......+..++..+.+|||||+      +..   ...+..++..+|+++
T Consensus        34 vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i  113 (228)
T 2qu8_A           34 LSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVIL  113 (228)
T ss_dssp             EECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEE
Confidence            677999999999998733222       2344455556667899999999999      331   112234578899999


Q ss_pred             EEEECCChhhHH--HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-HHHhhhCCCCCCCce--eEEEEeeeccCC
Q 030931           66 YVVDSLDRERIG--KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-EVCEGLGLFDLKNRK--WHIQGTCALKGD  140 (169)
Q Consensus        66 ~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~Sa~~~~  140 (169)
                      +|||++++.++.  ....|+..+...  ..+.|+++|+||+|+.+..... +...... ......+  ++++++||++|.
T Consensus       114 ~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~SA~~g~  190 (228)
T 2qu8_A          114 FIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIK-QILDNVKNPIKFSSFSTLTGV  190 (228)
T ss_dssp             EEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHH-HHHHHCCSCEEEEECCTTTCT
T ss_pred             EEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHH-HHHHhcCCCceEEEEecccCC
Confidence            999999987764  334566666443  2479999999999996532211 1100000 0111222  689999999999


Q ss_pred             CHHHHHHHHHHHHHhhh
Q 030931          141 GLYEGLDWLASTLKEMR  157 (169)
Q Consensus       141 gi~~~~~~l~~~~~~~~  157 (169)
                      |++++|+++.+.+.+.+
T Consensus       191 gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          191 GVEQAKITACELLKNDQ  207 (228)
T ss_dssp             THHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            99999999999887664

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.92  E-value=1.7e-26  Score=170.21  Aligned_cols=152  Identities=16%  Similarity=0.142  Sum_probs=113.4

Q ss_pred             ccccCCCCCceeeeec--------eeeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCc-----hhhHHhhccCCCEEEEE
Q 030931            2 LRVKQPYCTSCTLVKF--------YLLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKL-----RPLWRHYFNNTDGLIYV   67 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f--------~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----~~~~~~~~~~~~~ii~v   67 (169)
                      |+|.+|+|||||++++        .+.+.+|++..+..+.+ +++.+++|||||++++     ..++..+++++|++|+|
T Consensus         8 lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V   87 (307)
T 3r7w_A            8 LMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHV   87 (307)
T ss_dssp             EECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEE
T ss_pred             EECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEE
Confidence            6789999999999985        23678899998888876 7899999999999988     67888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhc-CCCCCCCeEEEEEeCCCCCCCCCHhH---HHhhhCCCCCCCc---eeEEEEeeeccCC
Q 030931           68 VDSLDRERIGKAKQEFQAIIK-DPFMLNSVILVFANKQDMKGAMTPME---VCEGLGLFDLKNR---KWHIQGTCALKGD  140 (169)
Q Consensus        68 ~d~~~~~~~~~~~~~~~~~~~-~~~~~~~piivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~Sa~~~~  140 (169)
                      ||++++++++.+..|...+.. ....++.|+++|+||+|+.+.....+   +............   .++++++||++ .
T Consensus        88 ~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~  166 (307)
T 3r7w_A           88 FDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-E  166 (307)
T ss_dssp             EETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-S
T ss_pred             EECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-C
Confidence            999999999988766443322 11125799999999999865211110   1111111111222   36899999999 8


Q ss_pred             CHHHHHHHHHHHHH
Q 030931          141 GLYEGLDWLASTLK  154 (169)
Q Consensus       141 gi~~~~~~l~~~~~  154 (169)
                      |+.++|..++..+.
T Consensus       167 ~i~e~~~~iv~~li  180 (307)
T 3r7w_A          167 SLYKAWSQIVCSLI  180 (307)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHc
Confidence            89999999886543

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.92  E-value=4.4e-25  Score=163.71  Aligned_cols=153  Identities=16%  Similarity=0.165  Sum_probs=112.1

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEEEC--CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQYK--NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++.+++|||||++++     ...+.+|.+..+. .+...  .+.+++|||||++.+...+..+++.+|++++|||++++
T Consensus       160 i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  239 (332)
T 2wkq_A          160 VVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP  239 (332)
T ss_dssp             EEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred             EECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCH
Confidence            5678999999999654     5667777775543 33443  46677999999999999999999999999999999999


Q ss_pred             hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC---------CCCCcee-EEEEeeeccCCCH
Q 030931           74 ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF---------DLKNRKW-HIQGTCALKGDGL  142 (169)
Q Consensus        74 ~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~Sa~~~~gi  142 (169)
                      .++..+. .|+..+....  .+.|+++|+||+|+.+.....+........         .....++ +++++||++|.|+
T Consensus       240 ~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  317 (332)
T 2wkq_A          240 ASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL  317 (332)
T ss_dssp             HHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred             HHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCH
Confidence            9999887 6777665432  389999999999985431111100000000         0011233 7999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 030931          143 YEGLDWLASTLKEM  156 (169)
Q Consensus       143 ~~~~~~l~~~~~~~  156 (169)
                      +++|+++.+.+.++
T Consensus       318 ~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          318 KTVFDEAIRAVLCP  331 (332)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999887653

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.92  E-value=6.9e-25  Score=147.82  Aligned_cols=137  Identities=19%  Similarity=0.135  Sum_probs=98.9

Q ss_pred             ccccCCCCCceeeeecee-----eeeeee--eEEEEEEEECCEEEEEEEcCCCCCch------hhHHhhcc--CCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYL-----LFLLLV--RFNVEKVQYKNVIFTVWDVGGQEKLR------PLWRHYFN--NTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-----~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~~~~ii~   66 (169)
                      |++.+|+|||||++++..     ...|+.  ......+..++..+++|||||++.+.      .+...+++  +++++++
T Consensus         8 lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~   87 (165)
T 2wji_A            8 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVN   87 (165)
T ss_dssp             EECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEE
Confidence            577899999999998733     223333  33445566778999999999999875      34566665  8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931           67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  142 (169)
Q Consensus        67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  142 (169)
                      |+|+++.++   ...|+..+.+    .+.|+++|+||+|+....    ..+++.+.++        ++++++||++|+|+
T Consensus        88 v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~SA~~~~~v  152 (165)
T 2wji_A           88 IVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSAAKKMGI  152 (165)
T ss_dssp             EEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBGGGTBSH
T ss_pred             EecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhC--------CCEEEEEcCCCCCH
Confidence            999987543   3456666643    368999999999974321    2233333332        45999999999999


Q ss_pred             HHHHHHHHHHH
Q 030931          143 YEGLDWLASTL  153 (169)
Q Consensus       143 ~~~~~~l~~~~  153 (169)
                      +++|+++.+.+
T Consensus       153 ~~l~~~l~~~~  163 (165)
T 2wji_A          153 EELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.92  E-value=1.9e-25  Score=149.40  Aligned_cols=139  Identities=14%  Similarity=0.098  Sum_probs=97.4

Q ss_pred             ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCC-------chhhHHhhccCCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEK-------LRPLWRHYFNNTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~~~ii~   66 (169)
                      +++.+|+|||||++++....        ..|.......+...+..+.+|||||++.       +...+..+++.+|++++
T Consensus         6 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~   85 (161)
T 2dyk_A            6 IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLF   85 (161)
T ss_dssp             EECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEE
Confidence            56789999999999873221        1122344555677888999999999987       34566778999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCcee-EEEEeeeccCCCHHHH
Q 030931           67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW-HIQGTCALKGDGLYEG  145 (169)
Q Consensus        67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~  145 (169)
                      |+|+++..+...  .++..++..   .+.|+++|+||+|+.+.  .++..+ +.     ..++ +++++||++|.|++++
T Consensus        86 v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~-~~-----~~~~~~~~~~Sa~~~~gv~~l  152 (161)
T 2dyk_A           86 AVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKH--ELYLGP-LY-----GLGFGDPIPTSSEHARGLEEL  152 (161)
T ss_dssp             EEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGG--GGGCGG-GG-----GGSSCSCEECBTTTTBSHHHH
T ss_pred             EEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccc--hHhHHH-HH-----hCCCCCeEEEecccCCChHHH
Confidence            999987543322  233333332   36899999999998643  111111 11     2233 5899999999999999


Q ss_pred             HHHHHHHH
Q 030931          146 LDWLASTL  153 (169)
Q Consensus       146 ~~~l~~~~  153 (169)
                      |+++.+.+
T Consensus       153 ~~~l~~~l  160 (161)
T 2dyk_A          153 LEAIWERL  160 (161)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99998764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.91  E-value=2.4e-25  Score=151.12  Aligned_cols=142  Identities=13%  Similarity=0.089  Sum_probs=101.7

Q ss_pred             ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCchhh--------HHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~~~ii   65 (169)
                      |++.+|+|||||++++....        ..|.......+..++..+.+|||||++.+...        ...+++.+|+++
T Consensus         9 ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i   88 (172)
T 2gj8_A            9 IAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL   88 (172)
T ss_dssp             EEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEE
Confidence            56789999999999874322        12333445667778888999999999764321        124679999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      +|+|+++..++.. ..|+..+.+.. ..+.|+++|+||+|+.+...  +        .....+.+++++||++|.|++++
T Consensus        89 ~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~--~--------~~~~~~~~~~~~SA~~g~gv~~l  156 (172)
T 2gj8_A           89 FMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGETL--G--------MSEVNGHALIRLSARTGEGVDVL  156 (172)
T ss_dssp             EEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC--E--------EEEETTEEEEECCTTTCTTHHHH
T ss_pred             EEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcchh--h--------hhhccCCceEEEeCCCCCCHHHH
Confidence            9999998887763 46666654422 24799999999999853210  0        11123467999999999999999


Q ss_pred             HHHHHHHHHh
Q 030931          146 LDWLASTLKE  155 (169)
Q Consensus       146 ~~~l~~~~~~  155 (169)
                      |+++.+.+..
T Consensus       157 ~~~l~~~~~~  166 (172)
T 2gj8_A          157 RNHLKQSMGF  166 (172)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHhhh
Confidence            9999886643

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.90  E-value=1.8e-25  Score=160.78  Aligned_cols=144  Identities=11%  Similarity=0.069  Sum_probs=101.2

Q ss_pred             CCCCceeeeecee--------eeeeee-eEEEE------------------EEEECCEEEEEEE----------------
Q 030931            7 PYCTSCTLVKFYL--------LFLLLV-RFNVE------------------KVQYKNVIFTVWD----------------   43 (169)
Q Consensus         7 ~~~Ktsll~~f~~--------~~~~t~-~~~~~------------------~~~~~~~~~~i~D----------------   43 (169)
                      ++|||||+++|..        .+.||. +..+.                  .++...+.++|||                
T Consensus        38 ~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~  117 (255)
T 3c5h_A           38 GIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRST  117 (255)
T ss_dssp             CCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEEEEEECCCEETTTCSBTTGG
T ss_pred             CcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEEEEEcccccccccccccccc
Confidence            9999999998743        345554 32111                  1344678899999                


Q ss_pred             -------cCCCCCchhhHHhhcc---------------------CCCEEEEEEECCCh--hhHHHHHHHHHHHhcCCCCC
Q 030931           44 -------VGGQEKLRPLWRHYFN---------------------NTDGLIYVVDSLDR--ERIGKAKQEFQAIIKDPFML   93 (169)
Q Consensus        44 -------~~G~~~~~~~~~~~~~---------------------~~~~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~   93 (169)
                             ++|++++..++..+++                     +||++|+|||++++  .+|+.+..|+..+.+.....
T Consensus       118 ~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~  197 (255)
T 3c5h_A          118 ALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKT  197 (255)
T ss_dssp             GCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccC
Confidence                   7888888888888887                     79999999999998  99999999998886532224


Q ss_pred             CCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931           94 NSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK  154 (169)
Q Consensus        94 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  154 (169)
                      +.|+++|+||+|+.+....++... +..   ...+++++++||++|.|++++|+++.+.+.
T Consensus       198 ~~piilV~NK~Dl~~~~~v~~~~~-~~~---~~~~~~~~e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          198 KKPIVVVLTKCDEGVERYIRDAHT-FAL---SKKNLQVVETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             TCCEEEEEECGGGBCHHHHHHHHH-HHH---TSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcccccccHHHHHHHH-HHH---hcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            799999999999854322222111 110   112467999999999999999999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.90  E-value=1.3e-24  Score=149.89  Aligned_cols=141  Identities=12%  Similarity=0.010  Sum_probs=97.2

Q ss_pred             ccccCCCCCceeeeecee-----eeeeeeeEEE--EEEEECCEEEEEEEcCC----------CCCchhhHHhhccCC---
Q 030931            2 LRVKQPYCTSCTLVKFYL-----LFLLLVRFNV--EKVQYKNVIFTVWDVGG----------QEKLRPLWRHYFNNT---   61 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-----~~~~t~~~~~--~~~~~~~~~~~i~D~~G----------~~~~~~~~~~~~~~~---   61 (169)
                      |++.+|+|||||++++..     .+.++.+.+.  .....+ ..+.+|||||          ++.+..++..+++.+   
T Consensus        28 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (195)
T 1svi_A           28 LAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREEL  106 (195)
T ss_dssp             EEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTE
T ss_pred             EECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcC
Confidence            567899999999998732     3334444221  222333 3699999999          666777788888877   


Q ss_pred             CEEEEEEECCChhhHHHHH--HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCCCCCceeEEEEee
Q 030931           62 DGLIYVVDSLDRERIGKAK--QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM----EVCEGLGLFDLKNRKWHIQGTC  135 (169)
Q Consensus        62 ~~ii~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~S  135 (169)
                      +++++|+|+++..++....  .|+..       .+.|+++|+||+|+.+.....    ++.+.+.    ...+++++++|
T Consensus       107 ~~~i~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~S  175 (195)
T 1svi_A          107 KAVVQIVDLRHAPSNDDVQMYEFLKY-------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLN----IDPEDELILFS  175 (195)
T ss_dssp             EEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT----CCTTSEEEECC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHH-------cCCCEEEEEECcccCChHHHHHHHHHHHHHHc----ccCCCceEEEE
Confidence            9999999999877766532  33322       478999999999997543322    2222232    23456899999


Q ss_pred             eccCCCHHHHHHHHHHHHH
Q 030931          136 ALKGDGLYEGLDWLASTLK  154 (169)
Q Consensus       136 a~~~~gi~~~~~~l~~~~~  154 (169)
                      |++|.|++++|+++.+.+.
T Consensus       176 a~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          176 SETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHHT
T ss_pred             ccCCCCHHHHHHHHHHHhc
Confidence            9999999999999998764

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.90  E-value=1.3e-23  Score=156.97  Aligned_cols=137  Identities=21%  Similarity=0.340  Sum_probs=112.1

Q ss_pred             eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHhcCC
Q 030931           21 FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDP   90 (169)
Q Consensus        21 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~   90 (169)
                      +.||+|++...+..+++++++|||+||++++..|..++++++++|+|||+++          .+++.....|+..++...
T Consensus       177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~  256 (353)
T 1cip_A          177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK  256 (353)
T ss_dssp             CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred             cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence            4578888888899999999999999999999999999999999999999998          578999999999998866


Q ss_pred             CCCCCeEEEEEeCCCCCC-----------------CCCHhHHHhhhC-----CCCC-CCceeEEEEeeeccCCCHHHHHH
Q 030931           91 FMLNSVILVFANKQDMKG-----------------AMTPMEVCEGLG-----LFDL-KNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus        91 ~~~~~piivv~nK~Dl~~-----------------~~~~~~~~~~~~-----~~~~-~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                      ...+.|+++++||+|+..                 ..+.++......     +... ..+++.+++|||+++.||.++|+
T Consensus       257 ~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~  336 (353)
T 1cip_A          257 WFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFD  336 (353)
T ss_dssp             GGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHH
T ss_pred             cccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHH
Confidence            567899999999999842                 133333332221     1110 24567899999999999999999


Q ss_pred             HHHHHHHhhh
Q 030931          148 WLASTLKEMR  157 (169)
Q Consensus       148 ~l~~~~~~~~  157 (169)
                      ++.+.+.+..
T Consensus       337 ~v~~~i~~~~  346 (353)
T 1cip_A          337 AVTDVIIKNN  346 (353)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.90  E-value=8.8e-24  Score=144.85  Aligned_cols=141  Identities=18%  Similarity=0.152  Sum_probs=105.7

Q ss_pred             ccccCCCCCceeeeecee-----eeee--eeeEEEEEEEECCEEEEEEEcCCCCCch------hhHHhhcc--CCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYL-----LFLL--LVRFNVEKVQYKNVIFTVWDVGGQEKLR------PLWRHYFN--NTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-----~~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~~~~ii~   66 (169)
                      |++..|+|||||++++..     ...|  |.......+..++..+.+|||||++.+.      .++..+++  .++++++
T Consensus        12 lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~   91 (188)
T 2wjg_A           12 LIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVN   91 (188)
T ss_dssp             EECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEE
Confidence            577899999999998743     2223  3334556677788999999999999874      45666665  5999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931           67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  142 (169)
Q Consensus        67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  142 (169)
                      |+|.++   ++....|+..+..    .+.|+++|+||+|+....    ..+++.+.++        ++++++||+++.|+
T Consensus        92 v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~v  156 (188)
T 2wjg_A           92 IVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------VKVVPLSAAKKMGI  156 (188)
T ss_dssp             EEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBGGGTBSH
T ss_pred             Eecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC--------CCeEEEEecCCCCH
Confidence            999865   5566677777754    478999999999985321    2334444333        45999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 030931          143 YEGLDWLASTLKEMR  157 (169)
Q Consensus       143 ~~~~~~l~~~~~~~~  157 (169)
                      +++|+++...+.+..
T Consensus       157 ~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          157 EELKKAISIAVKDKK  171 (188)
T ss_dssp             HHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999887765

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.90  E-value=6.2e-26  Score=155.69  Aligned_cols=153  Identities=14%  Similarity=0.061  Sum_probs=104.5

Q ss_pred             ccccCCCCCceeeeece-----eeeeeeeeEEEEEEEECCEEEEEEEcCC-----------CCCchhhHHhhccC-CCEE
Q 030931            2 LRVKQPYCTSCTLVKFY-----LLFLLLVRFNVEKVQYKNVIFTVWDVGG-----------QEKLRPLWRHYFNN-TDGL   64 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-----~~~~~t~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~~~~-~~~i   64 (169)
                      +++.+|+|||||++++.     ..+.|+.......+...  .+.+|||||           ++.+..++..+++. ++++
T Consensus         6 v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (190)
T 2cxx_A            6 FAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNI   83 (190)
T ss_dssp             EEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGC
T ss_pred             EECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccC
Confidence            56789999999999873     33444444444444444  689999999           56677777888887 7877


Q ss_pred             EEEEECCChhhHHHH-HHHHHH--------HhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEE
Q 030931           65 IYVVDSLDRERIGKA-KQEFQA--------IIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQG  133 (169)
Q Consensus        65 i~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~  133 (169)
                      ++|+++.+..++..+ ..|...        +.......+.|+++|+||+|+.+..  ..+++.+.++... .....++++
T Consensus        84 ~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  162 (190)
T 2cxx_A           84 DVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPL-SEIDKVFIP  162 (190)
T ss_dssp             CEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCG-GGHHHHEEE
T ss_pred             CEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhh-hccCCcEEE
Confidence            777777777777766 445432        1111112478999999999997543  1233444444311 111235899


Q ss_pred             eeeccCCCHHHHHHHHHHHHHhhh
Q 030931          134 TCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       134 ~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      +||++|.|++++|+++.+.+.+.+
T Consensus       163 ~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          163 ISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             EecCCCCCHHHHHHHHHHhcchhh
Confidence            999999999999999999887754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.90  E-value=3.1e-24  Score=148.77  Aligned_cols=150  Identities=18%  Similarity=0.244  Sum_probs=113.1

Q ss_pred             ccccCCCCCceeeeece-----eeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKFY-----LLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-----~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      |++..|+|||||++++.     ..+.||++..+  ..+.+.+  +.+.+||++|++++...+..+++.++++++|+|+++
T Consensus        10 lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~   89 (199)
T 2f9l_A           10 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK   89 (199)
T ss_dssp             EESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTC
T ss_pred             EECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcC
Confidence            57789999999999763     34567776443  4455544  678899999999998888999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      ..++..+..|+..+... ...+.|+++++||+|+.+..  ...+.. .+.    ...++.++++||+++.|++++|+++.
T Consensus        90 ~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~-~l~----~~~~~~~~d~Sal~~~~i~~l~~~l~  163 (199)
T 2f9l_A           90 HLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEAR-AFA----EKNNLSFIETSALDSTNVEEAFKNIL  163 (199)
T ss_dssp             HHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHH-HHH----HHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHH-HHH----HHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999888888766432 12468999999999996422  222221 111    22345689999999999999999999


Q ss_pred             HHHHhhh
Q 030931          151 STLKEMR  157 (169)
Q Consensus       151 ~~~~~~~  157 (169)
                      +.+.+..
T Consensus       164 ~~~~~~~  170 (199)
T 2f9l_A          164 TEIYRIV  170 (199)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887643

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.89  E-value=6.1e-24  Score=152.75  Aligned_cols=136  Identities=15%  Similarity=0.054  Sum_probs=101.3

Q ss_pred             ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchh----------hHHhhc--cCCC
Q 030931            2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP----------LWRHYF--NNTD   62 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~--~~~~   62 (169)
                      |++.+++|||||++++...       +..|+......+..++..+.+|||||++.+..          +...++  +.+|
T Consensus         6 lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d   85 (256)
T 3iby_A            6 LIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYD   85 (256)
T ss_dssp             EEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCS
T ss_pred             EECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCC
Confidence            5789999999999987322       22334455667778889999999999988764          455667  8999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCCCCCceeEEEEeeecc
Q 030931           63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----TPMEVCEGLGLFDLKNRKWHIQGTCALK  138 (169)
Q Consensus        63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  138 (169)
                      ++|+|+|+++.++.....   ..+.+    .+.|+++|+||+|+....    ....+.+.++        ++++++||++
T Consensus        86 ~vi~VvDas~~~~~~~l~---~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA~~  150 (256)
T 3iby_A           86 CIINVIDACHLERHLYLT---SQLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLG--------CSVIPIQAHK  150 (256)
T ss_dssp             EEEEEEEGGGHHHHHHHH---HHHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--------SCEEECBGGG
T ss_pred             EEEEEeeCCCchhHHHHH---HHHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--------CCEEEEECCC
Confidence            999999998866555433   33322    278999999999975322    2334444443        4699999999


Q ss_pred             CCCHHHHHHHHHHH
Q 030931          139 GDGLYEGLDWLAST  152 (169)
Q Consensus       139 ~~gi~~~~~~l~~~  152 (169)
                      |.|++++|+++.+.
T Consensus       151 g~gi~el~~~i~~~  164 (256)
T 3iby_A          151 NIGIPALQQSLLHC  164 (256)
T ss_dssp             TBSHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999876

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.89  E-value=1.2e-24  Score=149.70  Aligned_cols=147  Identities=18%  Similarity=0.132  Sum_probs=97.8

Q ss_pred             ccccCCCCCceeeeecee----eeeeeeeEEEEE-EEECCEEEEEEEcCC----------CCCchhhHHhhccCC---CE
Q 030931            2 LRVKQPYCTSCTLVKFYL----LFLLLVRFNVEK-VQYKNVIFTVWDVGG----------QEKLRPLWRHYFNNT---DG   63 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~----~~~~t~~~~~~~-~~~~~~~~~i~D~~G----------~~~~~~~~~~~~~~~---~~   63 (169)
                      |++.+|+|||||++++..    .+.++.+..... ....+..+.+|||||          ++.+..++..+++.+   ++
T Consensus        28 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (195)
T 3pqc_A           28 FVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQM  107 (195)
T ss_dssp             EEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred             EECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceE
Confidence            577999999999998732    233344422211 122244688999999          556777777787776   99


Q ss_pred             EEEEEECCChhhH--HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCC
Q 030931           64 LIYVVDSLDRERI--GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG  141 (169)
Q Consensus        64 ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  141 (169)
                      +++|+|.++..+.  ..+..|+...       +.|+++|+||+|+.+........+...........++++++||++|.|
T Consensus       108 vi~v~d~~~~~~~~~~~~~~~~~~~-------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  180 (195)
T 3pqc_A          108 VFLLVDGRIPPQDSDLMMVEWMKSL-------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEG  180 (195)
T ss_dssp             EEEEEETTSCCCHHHHHHHHHHHHT-------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTT
T ss_pred             EEEEecCCCCCCHHHHHHHHHHHHc-------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCC
Confidence            9999999775433  3333444432       689999999999975433322222221110112345799999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 030931          142 LYEGLDWLASTLKE  155 (169)
Q Consensus       142 i~~~~~~l~~~~~~  155 (169)
                      ++++|+++.+.+.+
T Consensus       181 v~~l~~~l~~~l~~  194 (195)
T 3pqc_A          181 ISELLDLISTLLKE  194 (195)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999988754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.89  E-value=4.6e-23  Score=154.48  Aligned_cols=137  Identities=22%  Similarity=0.276  Sum_probs=104.1

Q ss_pred             eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHhcCC
Q 030931           21 FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDP   90 (169)
Q Consensus        21 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~   90 (169)
                      ..||+|+....+..+++++++|||+|++.++..|..++++++++|||||+++          .+++.....|+..++...
T Consensus       185 r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~  264 (362)
T 1zcb_A          185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR  264 (362)
T ss_dssp             CCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred             cCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch
Confidence            3467788888899999999999999999999999999999999999999998          789999999999998765


Q ss_pred             CCCCCeEEEEEeCCCCCC-----------------C-CCHhHHHhhh-----CCCCCC-CceeEEEEeeeccCCCHHHHH
Q 030931           91 FMLNSVILVFANKQDMKG-----------------A-MTPMEVCEGL-----GLFDLK-NRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus        91 ~~~~~piivv~nK~Dl~~-----------------~-~~~~~~~~~~-----~~~~~~-~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      ...+.|+++++||+|+..                 . .+.++.....     .+.... .+.+.+++|||++++||.++|
T Consensus       265 ~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF  344 (362)
T 1zcb_A          265 VFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVF  344 (362)
T ss_dssp             GGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHH
T ss_pred             hhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHH
Confidence            567899999999999852                 1 3334433321     111111 356789999999999999999


Q ss_pred             HHHHHHHHhhh
Q 030931          147 DWLASTLKEMR  157 (169)
Q Consensus       147 ~~l~~~~~~~~  157 (169)
                      +++.+.+.+..
T Consensus       345 ~~v~~~i~~~~  355 (362)
T 1zcb_A          345 RDVKDTILHDN  355 (362)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.89  E-value=4.2e-23  Score=148.57  Aligned_cols=139  Identities=18%  Similarity=0.182  Sum_probs=103.5

Q ss_pred             ccccCCCCCceeeeeceeee-------eeeeeEEEEEEEECCEEEEEEEcCCCCCchh------hHHhhc--cCCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF-------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP------LWRHYF--NNTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~~~ii~   66 (169)
                      |++.+++|||||++++....       ..|+......+..++..+.+|||||++.+..      +...++  ..+|++++
T Consensus        10 lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~   89 (258)
T 3a1s_A           10 LAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVIL   89 (258)
T ss_dssp             EECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEE
T ss_pred             EECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEE
Confidence            67899999999999873322       2244445556777889999999999988764      335555  58999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931           67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  142 (169)
Q Consensus        67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  142 (169)
                      |+|+++.++.   ..|...+.+    .+.|+++|+||+|+.+.    .+..++.+.++        ++++++||++|.|+
T Consensus        90 V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg--------~~vi~~SA~~g~gi  154 (258)
T 3a1s_A           90 VADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG--------IPVVFTSSVTGEGL  154 (258)
T ss_dssp             EEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC--------SCEEECCTTTCTTH
T ss_pred             EeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcC--------CCEEEEEeeCCcCH
Confidence            9999886543   345556543    27899999999997432    12344444443        46999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 030931          143 YEGLDWLASTLKE  155 (169)
Q Consensus       143 ~~~~~~l~~~~~~  155 (169)
                      +++|+++.+.+..
T Consensus       155 ~el~~~i~~~~~~  167 (258)
T 3a1s_A          155 EELKEKIVEYAQK  167 (258)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999987653

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.89  E-value=2.1e-23  Score=153.71  Aligned_cols=149  Identities=17%  Similarity=0.075  Sum_probs=109.2

Q ss_pred             ccccCCCCCceeeeecee--------eeeeeeeEEEEEEEEC-CEEEEEEEcCCCCCch----------hhHHhhccCCC
Q 030931            2 LRVKQPYCTSCTLVKFYL--------LFLLLVRFNVEKVQYK-NVIFTVWDVGGQEKLR----------PLWRHYFNNTD   62 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~--------~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~----------~~~~~~~~~~~   62 (169)
                      +.+.+++|||||+|++..        ....|.......+..+ +..+.+|||||+....          ..+..+++.+|
T Consensus        15 ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD   94 (308)
T 3iev_A           15 IVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEAD   94 (308)
T ss_dssp             EECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCS
T ss_pred             EECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCC
Confidence            567899999999998732        2233433444556667 9999999999997654          55677889999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC-CCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCC
Q 030931           63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK-GAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG  141 (169)
Q Consensus        63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  141 (169)
                      ++++|+|+++..++.....|+..+..    .+.|+++|+||+|+. +.....+....+...  .....+++++||++|.|
T Consensus        95 ~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~--~~~~~~i~~vSA~~g~g  168 (308)
T 3iev_A           95 VILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKK--HPELTEIVPISALKGAN  168 (308)
T ss_dssp             EEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHH--CTTCCCEEECBTTTTBS
T ss_pred             EEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHh--ccCCCeEEEEeCCCCCC
Confidence            99999999998888887776776643    368999999999986 332222222222110  00124599999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 030931          142 LYEGLDWLASTLKEM  156 (169)
Q Consensus       142 i~~~~~~l~~~~~~~  156 (169)
                      ++++|+++...+.+.
T Consensus       169 v~~L~~~l~~~l~~~  183 (308)
T 3iev_A          169 LDELVKTILKYLPEG  183 (308)
T ss_dssp             HHHHHHHHHHHSCBC
T ss_pred             HHHHHHHHHHhCccC
Confidence            999999999988654

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.89  E-value=6.6e-23  Score=151.27  Aligned_cols=137  Identities=23%  Similarity=0.348  Sum_probs=112.2

Q ss_pred             eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC----------ChhhHHHHHHHHHHHhcCC
Q 030931           21 FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL----------DRERIGKAKQEFQAIIKDP   90 (169)
Q Consensus        21 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~   90 (169)
                      ..||+|+....+..+++++++|||+||++++..|..++++++++|+|||++          +.+++.....|+..++...
T Consensus       151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~  230 (327)
T 3ohm_A          151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP  230 (327)
T ss_dssp             CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred             cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence            567889999999999999999999999999999999999999999999664          6788999999999998876


Q ss_pred             CCCCCeEEEEEeCCCCCC------------------CCCHhHHHhhh-----CCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931           91 FMLNSVILVFANKQDMKG------------------AMTPMEVCEGL-----GLFDLKNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus        91 ~~~~~piivv~nK~Dl~~------------------~~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                      ...+.|+++++||+|+.+                  ..+.++..+.+     .......+++.+++|||+++.||..+|.
T Consensus       231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~  310 (327)
T 3ohm_A          231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA  310 (327)
T ss_dssp             GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred             ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence            667899999999999743                  12333322211     1111244667889999999999999999


Q ss_pred             HHHHHHHhhh
Q 030931          148 WLASTLKEMR  157 (169)
Q Consensus       148 ~l~~~~~~~~  157 (169)
                      .+.+.+.+..
T Consensus       311 ~v~~~Il~~~  320 (327)
T 3ohm_A          311 AVKDTILQLN  320 (327)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.88  E-value=1.9e-23  Score=143.96  Aligned_cols=146  Identities=17%  Similarity=0.243  Sum_probs=111.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEECC--EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQYKN--VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      |++..|+|||||++++     ...+.||++..+  ..+...+  +.+++||++|++++...+..+++.++++++|+|.++
T Consensus        34 lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~  113 (191)
T 1oix_A           34 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAK  113 (191)
T ss_dssp             EEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTC
T ss_pred             EECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcC
Confidence            5678999999999976     345667777554  4455544  567789999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      ..+++.+..|+..+.+. ...+.|+++++||+|+.+..  ...+ ...+.    ...++.++++||+++.|++++|+++.
T Consensus       114 ~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~-a~~l~----~~~~~~~ld~Sald~~~v~~l~~~l~  187 (191)
T 1oix_A          114 HLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDE-ARAFA----EKNGLSFIETSALDSTNVEAAFQTIL  187 (191)
T ss_dssp             HHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHH-HHHHH----HHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHH-HHHHH----HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99998888888766432 12468999999999986422  2222 22221    22345689999999999999999998


Q ss_pred             HHH
Q 030931          151 STL  153 (169)
Q Consensus       151 ~~~  153 (169)
                      +.+
T Consensus       188 ~~i  190 (191)
T 1oix_A          188 TEI  190 (191)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            765

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.87  E-value=5.6e-23  Score=155.30  Aligned_cols=136  Identities=23%  Similarity=0.321  Sum_probs=107.5

Q ss_pred             eeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHhcCCC
Q 030931           22 LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD----------RERIGKAKQEFQAIIKDPF   91 (169)
Q Consensus        22 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~   91 (169)
                      .+|+|+....+..+++++++|||+|+++++..|..++++++++|+|||+++          .++|..+..|+..+.....
T Consensus       202 ~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~  281 (402)
T 1azs_C          202 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW  281 (402)
T ss_dssp             CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred             cceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence            357778888888899999999999999999999999999999999999999          8999999999999987655


Q ss_pred             CCCCeEEEEEeCCCCCCC-----C-C--------------------------HhHHHhh----hC-C---CCCCCceeEE
Q 030931           92 MLNSVILVFANKQDMKGA-----M-T--------------------------PMEVCEG----LG-L---FDLKNRKWHI  131 (169)
Q Consensus        92 ~~~~piivv~nK~Dl~~~-----~-~--------------------------~~~~~~~----~~-~---~~~~~~~~~~  131 (169)
                      ..+.|+++|+||+|+...     . .                          .++....    +. .   .....+.+.+
T Consensus       282 ~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~  361 (402)
T 1azs_C          282 LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP  361 (402)
T ss_dssp             CSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEE
T ss_pred             CCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEE
Confidence            678999999999997421     1 0                          0111100    00 0   0001235678


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          132 QGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       132 ~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      ++|||+++.||.++|.++.+.+.+..
T Consensus       362 ~~TSA~d~~nV~~vF~~v~~~I~~~~  387 (402)
T 1azs_C          362 HFTCAVDTENIRRVFNDCRDIIQRMH  387 (402)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeecCcCHHHHHHHHHHHHHHHH
Confidence            89999999999999999998887654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.87  E-value=7.4e-23  Score=148.52  Aligned_cols=140  Identities=16%  Similarity=0.076  Sum_probs=102.0

Q ss_pred             ccccCCCCCceeeeeceeee-------eeeeeEEEEEEEECCEEEEEEEcCCCCCchh----------hHHhhc--cCCC
Q 030931            2 LRVKQPYCTSCTLVKFYLLF-------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP----------LWRHYF--NNTD   62 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~--~~~~   62 (169)
                      |++.+++|||||+|++....       ..|.......+...+..+.+|||||++.+..          .+..++  +.+|
T Consensus         8 lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d   87 (274)
T 3i8s_A            8 LIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDAD   87 (274)
T ss_dssp             EEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCS
T ss_pred             EECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCC
Confidence            57899999999999873322       2234445566777788999999999988762          233333  7999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCCCCCceeEEEEeeecc
Q 030931           63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM----TPMEVCEGLGLFDLKNRKWHIQGTCALK  138 (169)
Q Consensus        63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  138 (169)
                      ++++|+|+++.++......++.+.       +.|+++|+||+|+.+..    ..+.+.+.++        ++++++||++
T Consensus        88 ~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~i~~SA~~  152 (274)
T 3i8s_A           88 LLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQNIRIEIDALSARLG--------CPVIPLVSTR  152 (274)
T ss_dssp             EEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHTTEEECHHHHHHHHT--------SCEEECCCGG
T ss_pred             EEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhhhHHHHHHHHHHhcC--------CCEEEEEcCC
Confidence            999999998866555544444443       68999999999985422    2334444443        4699999999


Q ss_pred             CCCHHHHHHHHHHHHHhh
Q 030931          139 GDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       139 ~~gi~~~~~~l~~~~~~~  156 (169)
                      |.|++++|+++.+.+.+.
T Consensus       153 g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          153 GRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             GHHHHHHHHHHHTCCCCC
T ss_pred             CCCHHHHHHHHHHHHhcC
Confidence            999999999998766543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.87  E-value=8.2e-23  Score=149.99  Aligned_cols=145  Identities=15%  Similarity=0.021  Sum_probs=101.4

Q ss_pred             ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEECCEEEEEEEcCCCCC--------chhhHHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYKNVIFTVWDVGGQEK--------LRPLWRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~~~~~ii   65 (169)
                      |++.+++|||||+|++...        +.+|.......+..++..+.+|||||+..        +......+++.+|+++
T Consensus        12 ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il   91 (301)
T 1wf3_A           12 IVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVV   91 (301)
T ss_dssp             EECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEE
T ss_pred             EECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEE
Confidence            5789999999999987322        12232222233556889999999999886        4556667899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      +|+|+++..+..  ..|+.+.++.. ..+.|+++|+||+|+.+... ..+....+      ....+++++||++|.|+++
T Consensus        92 ~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iSA~~g~gv~~  162 (301)
T 1wf3_A           92 WVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEEAMKAYHEL------LPEAEPRMLSALDERQVAE  162 (301)
T ss_dssp             EEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHHHHHHHHT------STTSEEEECCTTCHHHHHH
T ss_pred             EEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHHHHHHHHHh------cCcCcEEEEeCCCCCCHHH
Confidence            999998765443  34543333322 14789999999999865422 12222222      1123689999999999999


Q ss_pred             HHHHHHHHHHh
Q 030931          145 GLDWLASTLKE  155 (169)
Q Consensus       145 ~~~~l~~~~~~  155 (169)
                      +++++...+.+
T Consensus       163 l~~~l~~~l~~  173 (301)
T 1wf3_A          163 LKADLLALMPE  173 (301)
T ss_dssp             HHHHHHTTCCB
T ss_pred             HHHHHHHhccc
Confidence            99999887654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.87  E-value=1.1e-23  Score=165.58  Aligned_cols=146  Identities=19%  Similarity=0.184  Sum_probs=102.4

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEE------------ECCEEEEEEEcCCCCCchhhHHhhccCCCEE
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQ------------YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGL   64 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~------------~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~i   64 (169)
                      |++.+++|||||++++     ...+.||++.++.+..            ...+.+.+|||||++.+...+..+++.++++
T Consensus        46 lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~i  125 (535)
T 3dpu_A           46 LIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVY  125 (535)
T ss_dssp             EESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEE
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEE
Confidence            6789999999999976     3556688887776432            1368999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931           65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  142 (169)
Q Consensus        65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  142 (169)
                      |+|+|+++.+   ....|+..+....  ++.|+++|+||+|+.+..  ..++.....     ...+.+++++||++|.|+
T Consensus       126 i~V~D~s~~~---~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~vSA~~g~gi  195 (535)
T 3dpu_A          126 MLLLDSRTDS---NKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERF-----PAIENRFHRISCKNGDGV  195 (535)
T ss_dssp             EEEECGGGGG---GHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHC-----GGGTTCEEECCC-----C
T ss_pred             EEEEeCCCch---hHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHH-----HhcCCceEEEecCcccCH
Confidence            9999997654   4455666664432  368999999999996533  233333322     223456999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 030931          143 YEGLDWLASTLKEMR  157 (169)
Q Consensus       143 ~~~~~~l~~~~~~~~  157 (169)
                      +++|+++.+.+.+..
T Consensus       196 ~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          196 ESIAKSLKSAVLHPD  210 (535)
T ss_dssp             TTHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999887754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.87  E-value=5.2e-24  Score=149.79  Aligned_cols=152  Identities=16%  Similarity=0.086  Sum_probs=97.8

Q ss_pred             ccccCCCCCceeeeeceeee---------eeeeeEEEEEEE-ECCEEEEEEEcCCCC----------CchhhHHhhccC-
Q 030931            2 LRVKQPYCTSCTLVKFYLLF---------LLLVRFNVEKVQ-YKNVIFTVWDVGGQE----------KLRPLWRHYFNN-   60 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~---------~~t~~~~~~~~~-~~~~~~~i~D~~G~~----------~~~~~~~~~~~~-   60 (169)
                      |++..|+|||||++++....         ..|.......+. .++..+.+|||||..          .+..+...+++. 
T Consensus        34 v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~  113 (223)
T 4dhe_A           34 FAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTR  113 (223)
T ss_dssp             EEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHC
T ss_pred             EEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcC
Confidence            56789999999999874332         123333444444 357889999999953          335556666666 


Q ss_pred             --CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH----hhhCCC--CCCCceeEEE
Q 030931           61 --TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVC----EGLGLF--DLKNRKWHIQ  132 (169)
Q Consensus        61 --~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~----~~~~~~--~~~~~~~~~~  132 (169)
                        +|++++|+|.++..+.. ...++..+..    .+.|+++|+||+|+.+.....+..    +.+...  ......++++
T Consensus       114 ~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  188 (223)
T 4dhe_A          114 PQLCGMILMMDARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQ  188 (223)
T ss_dssp             TTEEEEEEEEETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             cCcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEE
Confidence              67799999998753322 2334444422    468999999999986532211111    111100  0002456899


Q ss_pred             EeeeccCCCHHHHHHHHHHHHHhhhc
Q 030931          133 GTCALKGDGLYEGLDWLASTLKEMRA  158 (169)
Q Consensus       133 ~~Sa~~~~gi~~~~~~l~~~~~~~~~  158 (169)
                      ++||++|.|++++|+++.+.+.....
T Consensus       189 ~~SA~~g~gv~~l~~~l~~~~~~~~~  214 (223)
T 4dhe_A          189 LFSALKRTGLDDAHALIESWLRPAAA  214 (223)
T ss_dssp             EEBTTTTBSHHHHHHHHHHHHC----
T ss_pred             EeecCCCcCHHHHHHHHHHhcCccCC
Confidence            99999999999999999998876543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.87  E-value=4.3e-23  Score=149.45  Aligned_cols=138  Identities=19%  Similarity=0.119  Sum_probs=99.7

Q ss_pred             ccccCCCCCceeeeeceeee-----ee--eeeEEEEEEEECCEEEEEEEcCCCCCch------hhHHhhcc--CCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF-----LL--LVRFNVEKVQYKNVIFTVWDVGGQEKLR------PLWRHYFN--NTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~-----~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--~~~~ii~   66 (169)
                      |++.+++|||||++++....     .|  |.......+.. +..+.+|||||++.+.      .++..++.  .+|++++
T Consensus         8 lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~   86 (272)
T 3b1v_A            8 LIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILN   86 (272)
T ss_dssp             EECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEE
T ss_pred             EECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEE
Confidence            57899999999999884321     12  33333333433 6789999999999876      45666775  6999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC----CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931           67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA----MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  142 (169)
Q Consensus        67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  142 (169)
                      |+|+++.++.   ..|...+.+    .+.|+++|+||+|+...    .....+.+.++        ++++++||++|.|+
T Consensus        87 V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~vi~~SA~~g~gi  151 (272)
T 3b1v_A           87 VVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--------VPVVATSALKQTGV  151 (272)
T ss_dssp             EEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--------SCEEECBTTTTBSH
T ss_pred             EecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--------CCEEEEEccCCCCH
Confidence            9999886544   345555543    37899999999997432    12344444443        46999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 030931          143 YEGLDWLASTLKE  155 (169)
Q Consensus       143 ~~~~~~l~~~~~~  155 (169)
                      +++|+++.+.+..
T Consensus       152 ~el~~~i~~~~~~  164 (272)
T 3b1v_A          152 DQVVKKAAHTTTS  164 (272)
T ss_dssp             HHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999886543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.87  E-value=3.4e-22  Score=154.58  Aligned_cols=139  Identities=18%  Similarity=0.146  Sum_probs=91.0

Q ss_pred             ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCchhhH--------HhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLW--------RHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~~~~~~ii   65 (169)
                      |++.+++|||||+|++....        ..|.......+..+++.+.+|||||++.+...+        ..+++.+|+++
T Consensus       238 ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl  317 (476)
T 3gee_A          238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLIL  317 (476)
T ss_dssp             EECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSSCSEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEE
Confidence            56799999999999884331        223334445677789999999999998766443        34688999999


Q ss_pred             EEEECCChhhHHH---HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH--HHhhhCCCCCCCceeEEEEeeeccCC
Q 030931           66 YVVDSLDRERIGK---AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME--VCEGLGLFDLKNRKWHIQGTCALKGD  140 (169)
Q Consensus        66 ~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~  140 (169)
                      +|+|+++..++..   ...|+..+      .+.|+++|+||+|+.+......  +.+.        ...+++++||++|.
T Consensus       318 ~VvD~s~~~s~~~~~~~~~~l~~l------~~~piIvV~NK~Dl~~~~~~~~~~l~~~--------~~~~~i~vSAktg~  383 (476)
T 3gee_A          318 YLLDLGTERLDDELTEIRELKAAH------PAAKFLTVANKLDRAANADALIRAIADG--------TGTEVIGISALNGD  383 (476)
T ss_dssp             EEEETTTCSSGGGHHHHHHHHHHC------TTSEEEEEEECTTSCTTTHHHHHHHHHH--------HTSCEEECBTTTTB
T ss_pred             EEEECCCCcchhhhHHHHHHHHhc------CCCCEEEEEECcCCCCccchhHHHHHhc--------CCCceEEEEECCCC
Confidence            9999998877753   33444433      2789999999999976533211  2111        01358999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 030931          141 GLYEGLDWLASTLK  154 (169)
Q Consensus       141 gi~~~~~~l~~~~~  154 (169)
                      |++++++++.+.+.
T Consensus       384 GI~eL~~~i~~~~~  397 (476)
T 3gee_A          384 GIDTLKQHMGDLVK  397 (476)
T ss_dssp             SHHHHHHHHTHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999999887

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.87  E-value=8.2e-22  Score=142.82  Aligned_cols=142  Identities=20%  Similarity=0.139  Sum_probs=105.0

Q ss_pred             ccccCCCCCceeeeeceee-----eee--eeeEEEEEEEECCEEEEEEEcCCCCCchh------hHHhhc--cCCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLL-----FLL--LVRFNVEKVQYKNVIFTVWDVGGQEKLRP------LWRHYF--NNTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-----~~~--t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~~~ii~   66 (169)
                      |++.+|+|||||++++...     ..|  |+......+.+++..+.+|||||++.+..      .+..++  ..+|++++
T Consensus         8 lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~   87 (271)
T 3k53_A            8 LVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVD   87 (271)
T ss_dssp             EEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEE
Confidence            5779999999999987322     222  33344556777889999999999998766      566666  68999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC----CCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCH
Q 030931           67 VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG----AMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGL  142 (169)
Q Consensus        67 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  142 (169)
                      |+|.++.+   ....|+..+.+.   ...|+++|+||+|+.+    ......+.+.++        ++++++||++|.|+
T Consensus        88 v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------~~~~~~Sa~~g~gi  153 (271)
T 3k53_A           88 IVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--------VPVIPTNAKKGEGV  153 (271)
T ss_dssp             EEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS--------SCEEECBGGGTBTH
T ss_pred             EecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC--------CcEEEEEeCCCCCH
Confidence            99998753   334455555432   2389999999999642    123445555554        45999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q 030931          143 YEGLDWLASTLKEMR  157 (169)
Q Consensus       143 ~~~~~~l~~~~~~~~  157 (169)
                      .++|+++...+.+..
T Consensus       154 ~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          154 EELKRMIALMAEGKV  168 (271)
T ss_dssp             HHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999876543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.87  E-value=4.7e-23  Score=158.40  Aligned_cols=150  Identities=13%  Similarity=-0.031  Sum_probs=104.3

Q ss_pred             ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEECCEEEEEEEcCCC----------CCchhhHH-hhccCCC
Q 030931            2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYKNVIFTVWDVGGQ----------EKLRPLWR-HYFNNTD   62 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~-~~~~~~~   62 (169)
                      +++.+++|||||++++...        ...|.......+..++..+++|||||+          +.|..++. .+++.+|
T Consensus       180 lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad  259 (436)
T 2hjg_A          180 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSE  259 (436)
T ss_dssp             EECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCS
T ss_pred             EEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCC
Confidence            5678999999999987322        122223333456778889999999997          44444443 4788999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccCC
Q 030931           63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGD  140 (169)
Q Consensus        63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  140 (169)
                      ++++|+|+++..++... .|+..+..    .+.|+++|+||+|+.+...  .+++.+.+........+.+++++||++|.
T Consensus       260 ~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~  334 (436)
T 2hjg_A          260 VVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKK  334 (436)
T ss_dssp             EEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCT
T ss_pred             EEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCC
Confidence            99999999988777664 46655543    4789999999999975433  22332222111112234579999999999


Q ss_pred             CHHHHHHHHHHHHHhh
Q 030931          141 GLYEGLDWLASTLKEM  156 (169)
Q Consensus       141 gi~~~~~~l~~~~~~~  156 (169)
                      |++++|+.+.+.+.+.
T Consensus       335 ~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          335 RIHTLMPAIIKASENH  350 (436)
T ss_dssp             TGGGHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999877653

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.87  E-value=1.3e-22  Score=150.96  Aligned_cols=151  Identities=19%  Similarity=0.113  Sum_probs=111.6

Q ss_pred             ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEECC-EEEEEEEcCCC----CCchhhHHhhcc---CCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYKN-VIFTVWDVGGQ----EKLRPLWRHYFN---NTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~~-~~~~i~D~~G~----~~~~~~~~~~~~---~~~~ii~   66 (169)
                      |++.+++|||||++++...       ..+|...+...+...+ ..+.+|||||+    ..+..+...+++   .++++|+
T Consensus       163 lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~  242 (342)
T 1lnz_A          163 LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVH  242 (342)
T ss_dssp             EESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEE
T ss_pred             eeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEE
Confidence            5678999999999988433       2456666666677764 89999999994    334445555544   5999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeeccCCC
Q 030931           67 VVDSLD---RERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDG  141 (169)
Q Consensus        67 v~d~~~---~~~~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  141 (169)
                      |+|+++   +.+++....|..++.... ...+.|+++|+||+|+.+... .+++.+.+..      .++++++||++++|
T Consensus       243 VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~------~~~v~~iSA~tg~g  316 (342)
T 1lnz_A          243 VIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD------DYPVFPISAVTREG  316 (342)
T ss_dssp             EEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS------CCCBCCCSSCCSST
T ss_pred             EEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc------CCCEEEEECCCCcC
Confidence            999998   788888888888876532 245899999999999864311 1223333221      14689999999999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 030931          142 LYEGLDWLASTLKEMRA  158 (169)
Q Consensus       142 i~~~~~~l~~~~~~~~~  158 (169)
                      ++++++++.+.+.+...
T Consensus       317 i~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          317 LRELLFEVANQLENTPE  333 (342)
T ss_dssp             THHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHhhCcc
Confidence            99999999999877654

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.86  E-value=1.9e-22  Score=149.33  Aligned_cols=135  Identities=20%  Similarity=0.273  Sum_probs=110.3

Q ss_pred             eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC----------ChhhHHHHHHHHHHHhcCC
Q 030931           21 FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL----------DRERIGKAKQEFQAIIKDP   90 (169)
Q Consensus        21 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~   90 (169)
                      +.||+|+....+..+++++++|||+||++++.+|..++++++++|+|||++          +.+++.....|+..++...
T Consensus       145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~  224 (340)
T 4fid_A          145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE  224 (340)
T ss_dssp             CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred             ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence            567899999999999999999999999999999999999999999999998          7889999999999998876


Q ss_pred             CCCCCeEEEEEeCCCCCCC-----------------CCHhHHH----hhh-------CCCCCCC-----------ceeEE
Q 030931           91 FMLNSVILVFANKQDMKGA-----------------MTPMEVC----EGL-------GLFDLKN-----------RKWHI  131 (169)
Q Consensus        91 ~~~~~piivv~nK~Dl~~~-----------------~~~~~~~----~~~-------~~~~~~~-----------~~~~~  131 (169)
                      ...+.|+++++||+|+.+.                 .+.++..    ..+       .......           +.+.+
T Consensus       225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~  304 (340)
T 4fid_A          225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT  304 (340)
T ss_dssp             GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred             ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence            6678999999999997431                 1122211    111       1111111           46789


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHHh
Q 030931          132 QGTCALKGDGLYEGLDWLASTLKE  155 (169)
Q Consensus       132 ~~~Sa~~~~gi~~~~~~l~~~~~~  155 (169)
                      ++|||+++.||..+|+.+.+.+.+
T Consensus       305 h~TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          305 NPTNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             EEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999998887

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.86  E-value=4.9e-22  Score=151.53  Aligned_cols=143  Identities=15%  Similarity=0.061  Sum_probs=102.6

Q ss_pred             ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCE-EEEEEEcCCCCCchhh-------HHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNV-IFTVWDVGGQEKLRPL-------WRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~-------~~~~~~~~~~ii   65 (169)
                      +++..++|||||++++....        ..|.......+...+. ++.+|||||++.+..+       ...+++.+|+++
T Consensus        39 IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vl  118 (423)
T 3qq5_A           39 VAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGI  118 (423)
T ss_dssp             EECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEE
T ss_pred             EECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEE
Confidence            56788999999999884332        2334445566666544 8999999999877654       455788999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      +|+|++..+   ....|+..+.+.    +.|+++|+||+|+.+.... +..+.+.    ...+++++++||++|.|++++
T Consensus       119 lVvD~~~~~---~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~-~~~~~l~----~~~g~~v~~vSAktg~gI~eL  186 (423)
T 3qq5_A          119 LVTDSAPTP---YEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE-ELKGLYE----SRYEAKVLLVSALQKKGFDDI  186 (423)
T ss_dssp             EECSSSCCH---HHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT-HHHHHSS----CCTTCCCCCCSSCCTTSTTTH
T ss_pred             EEEeCCChH---HHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH-HHHHHHH----HHcCCCEEEEECCCCCCHHHH
Confidence            999994433   334555555332    7899999999999765443 2333332    334567999999999999999


Q ss_pred             HHHHHHHHHhh
Q 030931          146 LDWLASTLKEM  156 (169)
Q Consensus       146 ~~~l~~~~~~~  156 (169)
                      |+++.+.+.+.
T Consensus       187 ~~~L~~~l~~~  197 (423)
T 3qq5_A          187 GKTISEILPGD  197 (423)
T ss_dssp             HHHHHHHSCCC
T ss_pred             HHHHHHhhhhh
Confidence            99999988654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.86  E-value=2e-21  Score=150.40  Aligned_cols=141  Identities=21%  Similarity=0.214  Sum_probs=105.1

Q ss_pred             ccccCCCCCceeeeecee--------eeeeeeeEEEEEEEECCEEEEEEEcCCCC-Cchh--------hHHhhccCCCEE
Q 030931            2 LRVKQPYCTSCTLVKFYL--------LFLLLVRFNVEKVQYKNVIFTVWDVGGQE-KLRP--------LWRHYFNNTDGL   64 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~--------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------~~~~~~~~~~~i   64 (169)
                      |++.+++|||||+|++..        ....|..+....+..++..+.+|||||++ .+..        ....+++.+|++
T Consensus       248 ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~v  327 (482)
T 1xzp_A          248 IVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIV  327 (482)
T ss_dssp             EECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEE
T ss_pred             EECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEE
Confidence            567899999999998732        22334455566778889999999999987 5432        245678999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      ++|+|++++.+++... +++.+      .+.|+++|+||+|+.+..+.+++.+...      ..++++++||++|+|+++
T Consensus       328 l~VvD~s~~~s~~~~~-il~~l------~~~piivV~NK~DL~~~~~~~~~~~~~~------~~~~~i~iSAktg~Gi~e  394 (482)
T 1xzp_A          328 LFVLDASSPLDEEDRK-ILERI------KNKRYLVVINKVDVVEKINEEEIKNKLG------TDRHMVKISALKGEGLEK  394 (482)
T ss_dssp             EEEEETTSCCCHHHHH-HHHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHT------CSTTEEEEEGGGTCCHHH
T ss_pred             EEEecCCCCCCHHHHH-HHHHh------cCCCEEEEEECcccccccCHHHHHHHhc------CCCcEEEEECCCCCCHHH
Confidence            9999999887776533 33332      3689999999999976545445444322      123589999999999999


Q ss_pred             HHHHHHHHHHh
Q 030931          145 GLDWLASTLKE  155 (169)
Q Consensus       145 ~~~~l~~~~~~  155 (169)
                      +++++.+.+..
T Consensus       395 L~~~l~~~~~~  405 (482)
T 1xzp_A          395 LEESIYRETQE  405 (482)
T ss_dssp             HHHHHHHHTHH
T ss_pred             HHHHHHHHHhh
Confidence            99999997654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.86  E-value=1.3e-21  Score=150.44  Aligned_cols=144  Identities=15%  Similarity=0.088  Sum_probs=98.8

Q ss_pred             ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCC---------chhhHHhhccCCCEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEK---------LRPLWRHYFNNTDGL   64 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~~~~~i   64 (169)
                      |++.+++|||||+|++....        ..|.......+.+++..+++|||||++.         +..++..+++.||++
T Consensus         6 ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~i   85 (439)
T 1mky_A            6 IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLV   85 (439)
T ss_dssp             EECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEE
T ss_pred             EECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEE
Confidence            67899999999999884332        1222344566778899999999999875         244567789999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCcee-EEEEeeeccCCCHH
Q 030931           65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW-HIQGTCALKGDGLY  143 (169)
Q Consensus        65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~  143 (169)
                      ++|+|+++..+..+  .++..+++.   .++|+++|+||+|+.+.. ..+....+.     ..++ +++++||++|.|+.
T Consensus        86 l~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~-----~lg~~~~~~iSA~~g~gv~  154 (439)
T 1mky_A           86 LFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELY-----SLGFGEPIPVSAEHNINLD  154 (439)
T ss_dssp             EEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHG-----GGSSCSCEECBTTTTBSHH
T ss_pred             EEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHH-----hcCCCCEEEEeccCCCCHH
Confidence            99999977544432  223333321   268999999999974320 111101111     1122 47999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 030931          144 EGLDWLASTLKEM  156 (169)
Q Consensus       144 ~~~~~l~~~~~~~  156 (169)
                      ++++++...+.+.
T Consensus       155 ~L~~~i~~~l~~~  167 (439)
T 1mky_A          155 TMLETIIKKLEEK  167 (439)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcccc
Confidence            9999999988753

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.86  E-value=1.8e-22  Score=150.75  Aligned_cols=134  Identities=21%  Similarity=0.322  Sum_probs=99.6

Q ss_pred             eeeEEEEEEEE------CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC----------ChhhHHHHHHHHHHHh
Q 030931           24 LVRFNVEKVQY------KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL----------DRERIGKAKQEFQAII   87 (169)
Q Consensus        24 t~~~~~~~~~~------~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~~~~~~~~~~~~~~   87 (169)
                      |.|+....+..      +.+++++|||+||++++.+|..++++++++|+|||++          +.++|.....|+..+.
T Consensus       164 T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~  243 (354)
T 2xtz_A          164 TTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL  243 (354)
T ss_dssp             CCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred             ccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHH
Confidence            44555555554      4689999999999999999999999999999999998          7889999999999998


Q ss_pred             cCCCCCCCeEEEEEeCCCCCCC----CC-------------------HhHHHhhhCC--------C---CCCCceeEEEE
Q 030931           88 KDPFMLNSVILVFANKQDMKGA----MT-------------------PMEVCEGLGL--------F---DLKNRKWHIQG  133 (169)
Q Consensus        88 ~~~~~~~~piivv~nK~Dl~~~----~~-------------------~~~~~~~~~~--------~---~~~~~~~~~~~  133 (169)
                      +....++.|+++|+||+|+.+.    .+                   .++.......        .   ....+.+.+++
T Consensus       244 ~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~e  323 (354)
T 2xtz_A          244 KQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYR  323 (354)
T ss_dssp             TCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEE
T ss_pred             hccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEE
Confidence            7655578999999999997421    11                   1111111000        0   00023456799


Q ss_pred             eeeccCCCHHHHHHHHHHHHHhhh
Q 030931          134 TCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       134 ~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      |||++++||.++|+++.+.+.+..
T Consensus       324 TSA~d~~nV~~vF~~v~~~I~~~~  347 (354)
T 2xtz_A          324 TTALDQKLVKKTFKLVDETLRRRN  347 (354)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecchhHHHHHHHHHHHHHHHH
Confidence            999999999999999999887654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.85  E-value=1.6e-21  Score=146.30  Aligned_cols=148  Identities=16%  Similarity=0.099  Sum_probs=107.1

Q ss_pred             ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEECCEEEEEEEcCCCCCch---------hhHHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLR---------PLWRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~~~~ii   65 (169)
                      +++.+|+|||||++++...       ..+|.+.....+..++..+.+|||||.....         .....+...+|+++
T Consensus       172 lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~il  251 (357)
T 2e87_A          172 IAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLII  251 (357)
T ss_dssp             EECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEE
Confidence            5678999999999987332       2345556666677788999999999986532         11223445799999


Q ss_pred             EEEECCChh--hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHH
Q 030931           66 YVVDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLY  143 (169)
Q Consensus        66 ~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  143 (169)
                      +|+|+++..  ++.....|+..+....  .+.|+++|+||+|+.+....++.....     ...+++++++||++|+|++
T Consensus       252 lV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~iSA~~g~gi~  324 (357)
T 2e87_A          252 YIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFV-----KEKGLNPIKISALKGTGID  324 (357)
T ss_dssp             EEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHH-----HHTTCCCEECBTTTTBTHH
T ss_pred             EEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHH-----HhcCCCeEEEeCCCCcCHH
Confidence            999998876  6777778888776532  278999999999986432222222211     1223569999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 030931          144 EGLDWLASTLKEM  156 (169)
Q Consensus       144 ~~~~~l~~~~~~~  156 (169)
                      ++++++.+.+...
T Consensus       325 ~l~~~i~~~l~~~  337 (357)
T 2e87_A          325 LVKEEIIKTLRPL  337 (357)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988664

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.85  E-value=3.1e-22  Score=154.59  Aligned_cols=151  Identities=13%  Similarity=-0.011  Sum_probs=102.5

Q ss_pred             ccccCCCCCceeeeeceee------eee--eeeEEEEEEEECCEEEEEEEcCC----------CCCchhhHHh-hccCCC
Q 030931            2 LRVKQPYCTSCTLVKFYLL------FLL--LVRFNVEKVQYKNVIFTVWDVGG----------QEKLRPLWRH-YFNNTD   62 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~------~~~--t~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~-~~~~~~   62 (169)
                      +++.+++|||||++++...      ..|  |.......+..++..+++|||||          ++++..++.. +++.+|
T Consensus       200 ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad  279 (456)
T 4dcu_A          200 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSE  279 (456)
T ss_dssp             EECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCS
T ss_pred             EecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCC
Confidence            5678999999999987422      111  22222345677888999999999          6777766554 789999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccCC
Q 030931           63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGD  140 (169)
Q Consensus        63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  140 (169)
                      ++++|+|+++..+. ....|...+.+    .+.|+++|+||+|+.+...  .++..+...........++++++||++|.
T Consensus       280 ~~llviD~~~~~~~-~~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  354 (456)
T 4dcu_A          280 VVAVVLDGEEGIIE-QDKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKK  354 (456)
T ss_dssp             EEEEEEETTTCCCH-HHHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCT
T ss_pred             EEEEEEeCCCCcCH-HHHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCc
Confidence            99999999874332 22344444432    4689999999999975332  23333222211111223579999999999


Q ss_pred             CHHHHHHHHHHHHHhhh
Q 030931          141 GLYEGLDWLASTLKEMR  157 (169)
Q Consensus       141 gi~~~~~~l~~~~~~~~  157 (169)
                      |++++|+++.+.+.+..
T Consensus       355 gv~~l~~~i~~~~~~~~  371 (456)
T 4dcu_A          355 RIHTLMPAIIKASENHS  371 (456)
T ss_dssp             TGGGHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999998776543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.84  E-value=9.2e-24  Score=148.12  Aligned_cols=135  Identities=21%  Similarity=0.203  Sum_probs=91.3

Q ss_pred             ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccC----CCEEEEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNN----TDGLIYVVD   69 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~----~~~ii~v~d   69 (169)
                      +++.+|+|||||++++...        +.|+.+..     +....+.+|||||++.++..+..+++.    ++++|+|+|
T Consensus        17 ~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D   91 (218)
T 1nrj_B           17 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-----YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD   91 (218)
T ss_dssp             EECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-----GGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-----eeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEE
Confidence            5678999999999987322        33333322     267789999999999999999998887    899999999


Q ss_pred             CC-ChhhHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCCCCCceeEEEEeeeccCCC
Q 030931           70 SL-DRERIGKAKQEFQAIIKDP---FMLNSVILVFANKQDMKGAMTPMEVCEGLG---LFDLKNRKWHIQGTCALKGDG  141 (169)
Q Consensus        70 ~~-~~~~~~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~g  141 (169)
                      ++ ++.++.....|+..++...   ...+.|+++|+||+|+.+.....++.+.+.   .......+.+++++||++|.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B           92 STVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE  170 (218)
T ss_dssp             TTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             CCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            99 8889999999988886532   225799999999999987655332221111   001122334577777777654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.84  E-value=7e-22  Score=151.88  Aligned_cols=141  Identities=16%  Similarity=0.153  Sum_probs=94.5

Q ss_pred             ccccCCCCCceeeeeceeeee----eeeeE----EEEEEEECCEEEEEEEcCCCC--------CchhhHHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLFL----LLVRF----NVEKVQYKNVIFTVWDVGGQE--------KLRPLWRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~----~t~~~----~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~~~~~~ii   65 (169)
                      |++.+++|||||+|++.....    ++.|.    .+..+.+++..+.+|||||++        .+..++..+++.||+++
T Consensus         8 ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il   87 (436)
T 2hjg_A            8 IVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVII   87 (436)
T ss_dssp             EECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEE
Confidence            567999999999999854432    23332    233445567889999999986        56677788999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCcee-EEEEeeeccCCCHHH
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKW-HIQGTCALKGDGLYE  144 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~  144 (169)
                      +|+|+++..+...  .++..+++.   .+.|+++|+||+|+.+..  .+..+.      ...++ +++++||++|.|+.+
T Consensus        88 ~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~--~~~~~~------~~lg~~~~~~iSA~~g~gv~~  154 (436)
T 2hjg_A           88 FMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDF------YSLGFGEPYPISGTHGLGLGD  154 (436)
T ss_dssp             EEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-------CCCSS------GGGSSCCCEECBTTTTBTHHH
T ss_pred             EEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccch--hhHHHH------HHcCCCCeEEEeCcCCCChHH
Confidence            9999987666543  445555543   478999999999986431  111111      11122 589999999999999


Q ss_pred             HHHHHHHHHHh
Q 030931          145 GLDWLASTLKE  155 (169)
Q Consensus       145 ~~~~l~~~~~~  155 (169)
                      +++++.+.+.+
T Consensus       155 L~~~i~~~l~~  165 (436)
T 2hjg_A          155 LLDAVAEHFKN  165 (436)
T ss_dssp             HHHHHHHTGGG
T ss_pred             HHHHHHHhcCc
Confidence            99999988864

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.83  E-value=3.2e-21  Score=146.83  Aligned_cols=151  Identities=12%  Similarity=0.002  Sum_probs=105.4

Q ss_pred             ccccCCCCCceeeeeceeeeee-eeeEEEEEE--------------------------EECCEEEEEEEcCCCCCchhhH
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLL-LVRFNVEKV--------------------------QYKNVIFTVWDVGGQEKLRPLW   54 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~-t~~~~~~~~--------------------------~~~~~~~~i~D~~G~~~~~~~~   54 (169)
                      +++..++|||||++++...... ..++.....                          ......+.+||||||+.|...+
T Consensus        13 vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~~~~~~   92 (403)
T 3sjy_A           13 VVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATM   92 (403)
T ss_dssp             EECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGGGHHHH
T ss_pred             EECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHHHHHHH
Confidence            4678999999999988432111 111111111                          1122789999999999999999


Q ss_pred             HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh----HHHhhhCCCCCCCceeE
Q 030931           55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM----EVCEGLGLFDLKNRKWH  130 (169)
Q Consensus        55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~  130 (169)
                      ...++.+|++++|+|+++..++.....++..+...   ...|+++|+||+|+.+.....    ++.+.+..  .....++
T Consensus        93 ~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~--~~~~~~~  167 (403)
T 3sjy_A           93 LSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG--TWAENVP  167 (403)
T ss_dssp             HHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT--STTTTCC
T ss_pred             HHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh--hCCCCCE
Confidence            99999999999999998876677777666554321   235899999999997542221    22222211  1223567


Q ss_pred             EEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          131 IQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       131 ~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      ++++||++|.|++++++++.+.+....
T Consensus       168 ii~vSA~~g~gi~~L~~~l~~~l~~~~  194 (403)
T 3sjy_A          168 IIPVSALHKINIDSLIEGIEEYIKTPY  194 (403)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             EEEEECCCCcChHHHHHHHHHhCCCCC
Confidence            999999999999999999998775543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.83  E-value=1.2e-20  Score=142.03  Aligned_cols=145  Identities=7%  Similarity=-0.096  Sum_probs=110.0

Q ss_pred             ccccCCCCCceeeeeceeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHH
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ   81 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~   81 (169)
                      +++..++|||||++++. ....|++..+..+..++.++.+|||||+++|.......++.+|++|+|+| + ...+....+
T Consensus        26 iiG~~d~GKSTL~~~L~-~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~e  102 (370)
T 2elf_A           26 IIGTEKSGRTSLAANLG-KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QGLDAHTGE  102 (370)
T ss_dssp             EEESTTSSHHHHHHTTS-EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHHH
T ss_pred             EECCCCCCHHHHHHHHH-hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHHH
Confidence            46688999999999997 66788888888888888999999999999998888888999999999999 4 344555555


Q ss_pred             HHHHHhcCCCCCCCeE-EEEEe-CCCCCCCCCH----hHHHhhhCCCCCCCceeEEEE--eeecc---CCCHHHHHHHHH
Q 030931           82 EFQAIIKDPFMLNSVI-LVFAN-KQDMKGAMTP----MEVCEGLGLFDLKNRKWHIQG--TCALK---GDGLYEGLDWLA  150 (169)
Q Consensus        82 ~~~~~~~~~~~~~~pi-ivv~n-K~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~gi~~~~~~l~  150 (169)
                      ++..+..    .+.|. ++++| |+|+ +....    +++.+.+...  ....+++++  +||++   ++|++++++.+.
T Consensus       103 ~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~  175 (370)
T 2elf_A          103 CIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--VLQDWECISLNTNKSAKNPFEGVDELKARIN  175 (370)
T ss_dssp             HHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--TTTTCEEEECCCCTTSSSTTTTHHHHHHHHH
T ss_pred             HHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--CCCceEEEecccccccCcCCCCHHHHHHHHH
Confidence            5554422    24666 89999 9998 43211    2222222211  113468999  99999   999999999999


Q ss_pred             HHHHhh
Q 030931          151 STLKEM  156 (169)
Q Consensus       151 ~~~~~~  156 (169)
                      +.+...
T Consensus       176 ~~~~~~  181 (370)
T 2elf_A          176 EVAEKI  181 (370)
T ss_dssp             HHHHHH
T ss_pred             hhcccc
Confidence            887654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.83  E-value=1.5e-20  Score=148.65  Aligned_cols=146  Identities=14%  Similarity=0.129  Sum_probs=102.0

Q ss_pred             ccccCCCCCceeeeeceee----------------------eeeeeeEEEEEEEEC-----CEEEEEEEcCCCCCchhhH
Q 030931            2 LRVKQPYCTSCTLVKFYLL----------------------FLLLVRFNVEKVQYK-----NVIFTVWDVGGQEKLRPLW   54 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~----------------------~~~t~~~~~~~~~~~-----~~~~~i~D~~G~~~~~~~~   54 (169)
                      +++..++|||||++++...                      ...|+......+.+.     .+.+++||||||..|...+
T Consensus         9 IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev   88 (599)
T 3cb4_D            9 IIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEV   88 (599)
T ss_dssp             EECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHH
T ss_pred             EECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHH
Confidence            4567899999999987221                      111222223344443     4899999999999999999


Q ss_pred             HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCCCCCceeEE
Q 030931           55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNRKWHI  131 (169)
Q Consensus        55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~  131 (169)
                      ..+++.+|++|+|+|+++..+......|.....     .++|+++|+||+|+.+....   +++.+.++..     ..++
T Consensus        89 ~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~-----~~~v  158 (599)
T 3cb4_D           89 SRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGID-----ATDA  158 (599)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC-----CTTC
T ss_pred             HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCC-----cceE
Confidence            999999999999999998777766666665442     36899999999999765321   2333333321     1238


Q ss_pred             EEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          132 QGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       132 ~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      +++||++|.|++++++++.+.+....
T Consensus       159 i~vSAktg~GI~~Ll~~I~~~lp~p~  184 (599)
T 3cb4_D          159 VRCSAKTGVGVQDVLERLVRDIPPPE  184 (599)
T ss_dssp             EEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred             EEeecccCCCchhHHHHHhhcCCCcc
Confidence            99999999999999999999887654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.83  E-value=9.8e-21  Score=148.11  Aligned_cols=103  Identities=16%  Similarity=0.129  Sum_probs=81.8

Q ss_pred             ccccCCCCCceeeeece----------------------e-------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchh
Q 030931            2 LRVKQPYCTSCTLVKFY----------------------L-------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP   52 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----------------------~-------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~   52 (169)
                      |++..++|||||++++.                      .       ....|+......+.++++.+++|||||++.|..
T Consensus        18 IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~df~~   97 (528)
T 3tr5_A           18 IISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHADFTE   97 (528)
T ss_dssp             EEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCSTTCCH
T ss_pred             EECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCchhHHH
Confidence            56789999999999872                      0       123355556677888999999999999999999


Q ss_pred             hHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931           53 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  109 (169)
Q Consensus        53 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  109 (169)
                      .+..+++.+|++|+|+|+++..+......| ..+..    .++|+++|+||+|+...
T Consensus        98 ~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           98 DTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             HHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSCCS
T ss_pred             HHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCccc
Confidence            999999999999999999887666655444 33322    36899999999999654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.82  E-value=3.6e-21  Score=148.40  Aligned_cols=142  Identities=12%  Similarity=0.050  Sum_probs=93.4

Q ss_pred             ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHH--------hhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWR--------HYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~~~~~~~~ii   65 (169)
                      |.+.+++|||||+|++...        ...|..+....+..++..+.+|||||+..+...+.        .+++.+|+++
T Consensus       229 ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl  308 (462)
T 3geh_A          229 IVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVL  308 (462)
T ss_dssp             EEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCSCSEEE
T ss_pred             EEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEE
Confidence            5679999999999987322        12222233345677899999999999876544332        3678999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      +|+|.+++.+... ..|+..+      .+.|+++|+||+|+.+.....   . .  ... ....+++++||++|.|++++
T Consensus       309 ~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~---~-~--~~~-~~~~~~i~iSAktg~Gi~eL  374 (462)
T 3geh_A          309 LTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT---S-L--EYP-ENITQIVHTAAAQKQGIDSL  374 (462)
T ss_dssp             EEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST---T-C--CCC-TTCCCEEEEBTTTTBSHHHH
T ss_pred             EEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH---H-H--HHh-ccCCcEEEEECCCCCCHHHH
Confidence            9999988766554 4455554      236999999999986532211   1 1  000 13456999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030931          146 LDWLASTLKEMR  157 (169)
Q Consensus       146 ~~~l~~~~~~~~  157 (169)
                      ++++.+.+....
T Consensus       375 ~~~i~~~~~~~~  386 (462)
T 3geh_A          375 ETAILEIVQTGK  386 (462)
T ss_dssp             HHHHHHHHTTSS
T ss_pred             HHHHHHHHhccC
Confidence            999999887654

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.82  E-value=1.5e-20  Score=129.19  Aligned_cols=112  Identities=23%  Similarity=0.333  Sum_probs=87.2

Q ss_pred             cCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHH---HHHhcCC-CCCCCeEEEEEeCC-CCCCCCCHhHHHhh
Q 030931           44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEF---QAIIKDP-FMLNSVILVFANKQ-DMKGAMTPMEVCEG  118 (169)
Q Consensus        44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~---~~~~~~~-~~~~~piivv~nK~-Dl~~~~~~~~~~~~  118 (169)
                      .+||++++.+|..||+++|++|||+|++|.+.++ .+..+   ..+++.. ...+.|++|++||. |++++.+..++.+.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~  187 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  187 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence            3489999999999999999999999999987665 44444   4455543 24789999999995 89889999999999


Q ss_pred             hCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          119 LGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       119 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      +++..+ .+.|.+..|||++|+|+.+.++|++..+..++
T Consensus       188 L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~  225 (227)
T 3l82_B          188 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR  225 (227)
T ss_dssp             TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred             cCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence            998776 47899999999999999999999998776544

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.82  E-value=6.5e-22  Score=154.46  Aligned_cols=148  Identities=15%  Similarity=0.022  Sum_probs=103.9

Q ss_pred             ccccCCCCCceeeeece-----eeeee--eeeEEEEEEEE-CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKFY-----LLFLL--LVRFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-----~~~~~--t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +++..++|||||++++.     ..+.+  |..+....+.. .+.++.+||||||+.|..++..+++.+|++++|+|+++.
T Consensus         9 IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg   88 (537)
T 3izy_P            9 IMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDG   88 (537)
T ss_dssp             EEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSC
T ss_pred             EECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCC
Confidence            56789999999999872     22223  33333344444 466899999999999999999999999999999999885


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCCC-CCceeEEEEeeeccCCCHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDL-KNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ....... ++..+..    .+.|+++++||+|+.+...   ..++.. +..... ....++++++||++|.|++++++++
T Consensus        89 ~~~qt~e-~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~-~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I  162 (537)
T 3izy_P           89 VMKQTVE-SIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLA-YDVVCEDYGGDVQAVHVSALTGENMMALAEAT  162 (537)
T ss_dssp             CCHHHHH-HHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHH-TTSCCCCSSSSEEECCCCSSSSCSSHHHHHHH
T ss_pred             ccHHHHH-HHHHHHH----cCCcEEEEEecccccccchHHHHHHHHh-hhhhHHhcCCCceEEEEECCCCCCchhHHHHH
Confidence            5444333 3333322    3689999999999975321   112221 111111 1124689999999999999999999


Q ss_pred             HHHHHh
Q 030931          150 ASTLKE  155 (169)
Q Consensus       150 ~~~~~~  155 (169)
                      ...+..
T Consensus       163 ~~l~~~  168 (537)
T 3izy_P          163 IALAEM  168 (537)
T ss_dssp             HHHHTT
T ss_pred             HHhhhc
Confidence            987653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.82  E-value=3.1e-21  Score=141.70  Aligned_cols=127  Identities=19%  Similarity=0.049  Sum_probs=97.3

Q ss_pred             eeeeec-----e-eeeeeeeeEEEEEEEE-CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh-hHHHHHHHH
Q 030931           12 CTLVKF-----Y-LLFLLLVRFNVEKVQY-KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEF   83 (169)
Q Consensus        12 sll~~f-----~-~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~   83 (169)
                      ||+++|     . +.+.||+|..+. +.. .+-++++||+  ++++..+++.+++++|++|+|||++++. ++..+..|+
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l  108 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL  108 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence            687765     4 677899996554 322 2227999999  9999999999999999999999999987 788888998


Q ss_pred             HHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           84 QAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        84 ~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ..+..    .+.|+++|+||+|+.+....   .+..+.+.     .. +++++|||++|.|++++|..+..
T Consensus       109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~-----~~-~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYS-----GL-YPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT-----TT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHh-----hh-CcEEEEECCCCcCHHHHHHHhcC
Confidence            87643    47899999999999643221   12222222     11 56999999999999999988753

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.82  E-value=2.5e-20  Score=147.28  Aligned_cols=149  Identities=15%  Similarity=0.110  Sum_probs=104.0

Q ss_pred             ccccCCCCCceeeeeceee----------------------eeeeeeEEEEEEEEC-----CEEEEEEEcCCCCCchhhH
Q 030931            2 LRVKQPYCTSCTLVKFYLL----------------------FLLLVRFNVEKVQYK-----NVIFTVWDVGGQEKLRPLW   54 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~----------------------~~~t~~~~~~~~~~~-----~~~~~i~D~~G~~~~~~~~   54 (169)
                      +++..++|||||++++...                      ...|+......+.+.     .+.+++||||||..|...+
T Consensus        11 IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~~ev   90 (600)
T 2ywe_A           11 IIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEV   90 (600)
T ss_dssp             EECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGHHHH
T ss_pred             EECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHHHHH
Confidence            4567899999999987221                      011222122334332     4899999999999999999


Q ss_pred             HhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEe
Q 030931           55 RHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGT  134 (169)
Q Consensus        55 ~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (169)
                      ...++.+|++|+|+|+++..+......|.....     .++|+++|+||+|+.+.. .+++.+.+... ......+++++
T Consensus        91 ~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~-~~~v~~el~~~-lg~~~~~vi~v  163 (600)
T 2ywe_A           91 SRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD-VDRVKKQIEEV-LGLDPEEAILA  163 (600)
T ss_dssp             HHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHHHHHHHT-SCCCGGGCEEC
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC-HHHHHHHHHHh-hCCCcccEEEE
Confidence            999999999999999998877777666655442     378999999999997653 33322222110 01111248999


Q ss_pred             eeccCCCHHHHHHHHHHHHHhhh
Q 030931          135 CALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       135 Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      ||++|.|++++|+++.+.+....
T Consensus       164 SAktg~GI~~Lle~I~~~lp~p~  186 (600)
T 2ywe_A          164 SAKEGIGIEEILEAIVNRIPPPK  186 (600)
T ss_dssp             BTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             EeecCCCchHHHHHHHHhccccc
Confidence            99999999999999999887654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.81  E-value=9.3e-21  Score=147.06  Aligned_cols=146  Identities=15%  Similarity=0.063  Sum_probs=100.9

Q ss_pred             ccccCCCCCceeeeeceeee--------------eeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF--------------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   67 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~--------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   67 (169)
                      +++..++|||||++++....              ..|+...+..+..+++.+.+|||||++.|...+...++.+|++++|
T Consensus        24 iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilV  103 (482)
T 1wb1_A           24 IFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIV  103 (482)
T ss_dssp             EEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEE
T ss_pred             EECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEE
Confidence            45688999999999873222              2455555666777889999999999999988888999999999999


Q ss_pred             EECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--CC-CCceeEEEEeeeccCCC
Q 030931           68 VDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF--DL-KNRKWHIQGTCALKGDG  141 (169)
Q Consensus        68 ~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~Sa~~~~g  141 (169)
                      +|+++   +.+.+.+.    .+ +.   .++|+++|+||+|+.+....+++.+.+...  .. ....++++++||++|+|
T Consensus       104 vda~~g~~~qt~e~l~----~~-~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~g  175 (482)
T 1wb1_A          104 VDAKEGPKTQTGEHML----IL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFG  175 (482)
T ss_dssp             EETTTCSCHHHHHHHH----HH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTT
T ss_pred             EecCCCccHHHHHHHH----HH-HH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCC
Confidence            99987   33333322    22 11   267889999999997532122222111100  00 11146799999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 030931          142 LYEGLDWLASTLKE  155 (169)
Q Consensus       142 i~~~~~~l~~~~~~  155 (169)
                      ++++++++...+..
T Consensus       176 I~~L~~~L~~~i~~  189 (482)
T 1wb1_A          176 VDELKNLIITTLNN  189 (482)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcC
Confidence            99999999998763

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.81  E-value=3.4e-20  Score=141.39  Aligned_cols=150  Identities=13%  Similarity=-0.003  Sum_probs=93.0

Q ss_pred             ccccCCCCCceeeeece--------eeeee--eeeEEEEEEEE---------------C--------CEEEEEEEcCCCC
Q 030931            2 LRVKQPYCTSCTLVKFY--------LLFLL--LVRFNVEKVQY---------------K--------NVIFTVWDVGGQE   48 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~--------~~~~~--t~~~~~~~~~~---------------~--------~~~~~i~D~~G~~   48 (169)
                      +++..++|||||++++.        .+..+  |++..+.....               .        ...+.+||||||+
T Consensus        13 iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~   92 (408)
T 1s0u_A           13 MVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHE   92 (408)
T ss_dssp             EESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHH
T ss_pred             EEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHH
Confidence            45688999999999873        22223  66544433222               1        2789999999999


Q ss_pred             CchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCCC
Q 030931           49 KLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDL  124 (169)
Q Consensus        49 ~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~  124 (169)
                      .|.......+..+|++|+|+|+++........+.+..+..   ....|+++++||+|+.+...    .+++.+.+...  
T Consensus        93 ~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~---l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~--  167 (408)
T 1s0u_A           93 TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI---LGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGT--  167 (408)
T ss_dssp             HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH---TTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTS--
T ss_pred             HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH---cCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhc--
Confidence            9888888888899999999999853211222222222211   12358999999999976432    23333333211  


Q ss_pred             CCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          125 KNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       125 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      ....++++++||++|.|++++++++...+...
T Consensus       168 ~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~  199 (408)
T 1s0u_A          168 IAENAPIIPISAHHEANIDVLLKAIQDFIPTP  199 (408)
T ss_dssp             TTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred             CCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            12356799999999999999999999877654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.80  E-value=9.1e-20  Score=140.13  Aligned_cols=142  Identities=16%  Similarity=0.071  Sum_probs=97.6

Q ss_pred             ccccCCCCCceeeeecee--------------------------------------eeeeeeeEEEEEEEECCEEEEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYL--------------------------------------LFLLLVRFNVEKVQYKNVIFTVWD   43 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~--------------------------------------~~~~t~~~~~~~~~~~~~~~~i~D   43 (169)
                      +++..++|||||++++..                                      ....|+...+..+..++..+.|||
T Consensus        22 iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~~iiD  101 (439)
T 3j2k_7           22 FIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILD  101 (439)
T ss_pred             EEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEEEEEE
Confidence            456889999999998711                                      123566677777888899999999


Q ss_pred             cCCCCCchhhHHhhccCCCEEEEEEECCChhh---HH---HHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC----H
Q 030931           44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER---IG---KAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMT----P  112 (169)
Q Consensus        44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~----~  112 (169)
                      ||||++|...+..+++.+|++|+|+|+++...   |+   .....+.....    .+.| +++++||+|+.+...    .
T Consensus       102 TPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~~~~~~~~  177 (439)
T 3j2k_7          102 APGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTVNWSNERY  177 (439)
T ss_pred             CCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcccchHHHHH
Confidence            99999999999999999999999999987532   11   22222222211    2455 999999999864211    1


Q ss_pred             hHHHhhh----CCCCC-CCceeEEEEeeeccCCCHHHHHH
Q 030931          113 MEVCEGL----GLFDL-KNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus       113 ~~~~~~~----~~~~~-~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                      +++.+.+    ..... ....++++++||++|.|+.++++
T Consensus       178 ~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          178 EECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             HHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            1222211    10001 11256899999999999999665

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.80  E-value=4.1e-20  Score=142.16  Aligned_cols=150  Identities=11%  Similarity=-0.045  Sum_probs=96.5

Q ss_pred             ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCchhh------------HHhhccCC
Q 030931            2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL------------WRHYFNNT   61 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------------~~~~~~~~   61 (169)
                      |++.+|+|||||++++....        ..|.......+.+.+..+.+|||+|+.+....            ...+++.+
T Consensus       185 ivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~a  264 (439)
T 1mky_A          185 IVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKA  264 (439)
T ss_dssp             EECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHC
T ss_pred             EECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhC
Confidence            57789999999999873321        22222334556778889999999998543322            13467889


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccC
Q 030931           62 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKG  139 (169)
Q Consensus        62 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  139 (169)
                      +++++|+|+++..+....  ++...+..   .+.|+++|+||+|+.+...  .+++.+.+..........+++++||++|
T Consensus       265 d~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  339 (439)
T 1mky_A          265 DVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKG  339 (439)
T ss_dssp             SEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTT
T ss_pred             CEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCC
Confidence            999999999876555442  22233222   3789999999999865321  2223222211111123356999999999


Q ss_pred             CCHHHHHHHHHHHHHhh
Q 030931          140 DGLYEGLDWLASTLKEM  156 (169)
Q Consensus       140 ~gi~~~~~~l~~~~~~~  156 (169)
                      .|++++|+.+.+.+.+.
T Consensus       340 ~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          340 WNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             BSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhh
Confidence            99999999999877654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.80  E-value=8.3e-20  Score=144.48  Aligned_cols=147  Identities=16%  Similarity=0.062  Sum_probs=101.0

Q ss_pred             ccccCCCCCceeeeecee---------eeeeeeeEEEEEEE----------------ECCEEEEEEEcCCCCCchhhHHh
Q 030931            2 LRVKQPYCTSCTLVKFYL---------LFLLLVRFNVEKVQ----------------YKNVIFTVWDVGGQEKLRPLWRH   56 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~---------~~~~t~~~~~~~~~----------------~~~~~~~i~D~~G~~~~~~~~~~   56 (169)
                      +++..++|||||++++..         ...++++..+....                +....+++||||||+.|..++..
T Consensus        10 IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r   89 (594)
T 1g7s_A           10 VLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKR   89 (594)
T ss_dssp             EECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCS
T ss_pred             EECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHHHHH
Confidence            567889999999998721         12234444443321                11236999999999999999999


Q ss_pred             hccCCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH--------------h------
Q 030931           57 YFNNTDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP--------------M------  113 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--------------~------  113 (169)
                      +++.+|++|+|+|+++   +.+++.+..    +..    .+.|+++++||+|+......              .      
T Consensus        90 ~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~  161 (594)
T 1g7s_A           90 GGALADLAILIVDINEGFKPQTQEALNI----LRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKL  161 (594)
T ss_dssp             SSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHH
T ss_pred             HHhhCCEEEEEEECCCCccHhHHHHHHH----HHH----cCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHH
Confidence            9999999999999998   556554432    211    37899999999998642110              1      


Q ss_pred             -----HHHhhh---CCCC-----C--CCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          114 -----EVCEGL---GLFD-----L--KNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       114 -----~~~~~~---~~~~-----~--~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                           ++...+   ++..     .  ....++++++||++|.|+.++++++...+...
T Consensus       162 ~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~  219 (594)
T 1g7s_A          162 DTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (594)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence                 111111   1100     0  12456899999999999999999999877643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.80  E-value=7e-20  Score=137.50  Aligned_cols=150  Identities=17%  Similarity=0.082  Sum_probs=100.3

Q ss_pred             ccccCCCCCceeeeece-------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCC---------chhhHHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFY-------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEK---------LRPLWRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~~~~~ii   65 (169)
                      |.+.+|+|||||++++.       +.+.+|.+.....+..++..+.+|||+|...         +...+ ..+..+|+++
T Consensus       184 lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~aD~il  262 (364)
T 2qtf_A          184 IVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKYSDALI  262 (364)
T ss_dssp             EECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGGSSEEE
T ss_pred             EECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHhCCEEE
Confidence            56789999999999873       2345566666677888889999999999632         22332 2578999999


Q ss_pred             EEEECCChh--hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH---HH----hhhCCCCCCCceeEEEEeee
Q 030931           66 YVVDSLDRE--RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME---VC----EGLGLFDLKNRKWHIQGTCA  136 (169)
Q Consensus        66 ~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~Sa  136 (169)
                      +|+|++++.  .......|.. +++.....+.|+++|+||+|+.+.. ..+   ..    ..+.     ....+++++||
T Consensus       263 ~VvD~s~~~~~~~~~~~~~~~-~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~-----~~~~~~~~~SA  335 (364)
T 2qtf_A          263 LVIDSTFSENLLIETLQSSFE-ILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELY-----SPIFDVIPISA  335 (364)
T ss_dssp             EEEETTSCHHHHHHHHHHHHH-HHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHC-----SCEEEEEECBT
T ss_pred             EEEECCCCcchHHHHHHHHHH-HHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhc-----CCCCcEEEEEC
Confidence            999998865  4444433332 2222223578999999999986532 111   11    1110     12346899999


Q ss_pred             ccCCCHHHHHHHHHHHHHhhhcc
Q 030931          137 LKGDGLYEGLDWLASTLKEMRAA  159 (169)
Q Consensus       137 ~~~~gi~~~~~~l~~~~~~~~~~  159 (169)
                      +++.|++++++++.+.+.....+
T Consensus       336 ~~g~gi~~L~~~I~~~l~~~~~~  358 (364)
T 2qtf_A          336 LKRTNLELLRDKIYQLATQLSLE  358 (364)
T ss_dssp             TTTBSHHHHHHHHHHHHHHHC--
T ss_pred             CCCcCHHHHHHHHHHHhcccCCC
Confidence            99999999999999987776543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.80  E-value=4.9e-21  Score=131.67  Aligned_cols=118  Identities=22%  Similarity=0.237  Sum_probs=86.1

Q ss_pred             ccccCCCCCceeeeeceeeeeee-ee--EEEEEEEECCEEEEEEEcCCCCCchhhHHhhccC----CCEEEEEEECC-Ch
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLL-VR--FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNN----TDGLIYVVDSL-DR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t-~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~----~~~ii~v~d~~-~~   73 (169)
                      +++.+|+|||||++++.....+. ..  ......++....+.+|||||++.+...+..+++.    ++++++|+|++ +.
T Consensus        53 vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~  132 (193)
T 2ged_A           53 IAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP  132 (193)
T ss_dssp             EECCTTSSHHHHHHHHHHSSCC------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCcccccCCCceeeeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCc
Confidence            56789999999999884332211 11  0111123367789999999999998888888776    89999999999 88


Q ss_pred             hhHHHHHHHHHHHhcCC---CCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030931           74 ERIGKAKQEFQAIIKDP---FMLNSVILVFANKQDMKGAMTPMEVCEGL  119 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~  119 (169)
                      .++.....|+..++...   ...+.|+++|+||+|+.+.....++.+.+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l  181 (193)
T 2ged_A          133 KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL  181 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence            99999988888876532   22479999999999998766655554443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.80  E-value=1.1e-20  Score=146.04  Aligned_cols=142  Identities=17%  Similarity=0.155  Sum_probs=94.7

Q ss_pred             ccccCCCCCceeeeeceeeeee----eeeEE----EEEEEECCEEEEEEEcCC--------CCCchhhHHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLL----LVRFN----VEKVQYKNVIFTVWDVGG--------QEKLRPLWRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~----t~~~~----~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~~~~~~~ii   65 (169)
                      |++.+|+|||||+|++......    +.|.+    ...+.+.+..+.+|||||        ++.+..++..+++.+|+++
T Consensus        28 lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il  107 (456)
T 4dcu_A           28 IVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVII  107 (456)
T ss_dssp             EECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEE
T ss_pred             EECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEE
Confidence            5679999999999998544332    22322    333444678999999999        6667777888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      +|+|..+..  .....++.++++.   .+.|+++|+||+|+.+..  .+..+.+.+   .  .-.++++||++|.|+.++
T Consensus       108 ~VvD~~~~~--~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~l---g--~~~~~~iSA~~g~gv~~L  175 (456)
T 4dcu_A          108 FMVNGREGV--TAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYSL---G--FGEPYPISGTHGLGLGDL  175 (456)
T ss_dssp             EEEESSSCS--CHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGG---S--SSSEEECCTTTCTTHHHH
T ss_pred             EEEeCCCCC--ChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHHc---C--CCceEEeecccccchHHH
Confidence            999986533  3334555566553   478999999999986431  111111111   0  012679999999999999


Q ss_pred             HHHHHHHHHh
Q 030931          146 LDWLASTLKE  155 (169)
Q Consensus       146 ~~~l~~~~~~  155 (169)
                      ++++...+..
T Consensus       176 ~~~i~~~l~~  185 (456)
T 4dcu_A          176 LDAVAEHFKN  185 (456)
T ss_dssp             HHHHHTTGGG
T ss_pred             HHHHHhhccc
Confidence            9999887654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.80  E-value=1.1e-20  Score=145.09  Aligned_cols=142  Identities=14%  Similarity=0.110  Sum_probs=93.4

Q ss_pred             ccccCCCCCceeeeecee--------------------------------------eeeeeeeEEEEEEEECCEEEEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYL--------------------------------------LFLLLVRFNVEKVQYKNVIFTVWD   43 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~--------------------------------------~~~~t~~~~~~~~~~~~~~~~i~D   43 (169)
                      +++..++|||||++++..                                      ....|+...+..++..++.+.+||
T Consensus        11 iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~~iiD   90 (435)
T 1jny_A           11 VIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFFTIID   90 (435)
T ss_dssp             EEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEEEECC
T ss_pred             EEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEEEEEE
Confidence            456889999999998732                                      123566666667888899999999


Q ss_pred             cCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHH-------HHHHHhcCCCCCCCeEEEEEeCCCCCCCC-C----
Q 030931           44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ-------EFQAIIKDPFMLNSVILVFANKQDMKGAM-T----  111 (169)
Q Consensus        44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~----  111 (169)
                      |||+++|...+..+++.+|++|+|+|+++ .+|+....       .+.....   ..-.|+++++||+|+.+.. +    
T Consensus        91 tpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~---~~~~~iivviNK~Dl~~~~~~~~~~  166 (435)
T 1jny_A           91 APGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT---MGLDQLIVAVNKMDLTEPPYDEKRY  166 (435)
T ss_dssp             CSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH---TTCTTCEEEEECGGGSSSTTCHHHH
T ss_pred             CCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH---cCCCeEEEEEEcccCCCccccHHHH
Confidence            99999999999999999999999999988 66664332       2221111   1224699999999997531 1    


Q ss_pred             ---HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931          112 ---PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus       112 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                         .+++.+.+.........++++++||++|.|+.++++
T Consensus       167 ~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          167 KEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             HHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence               112222221111111236899999999999986543

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.79  E-value=8.7e-21  Score=147.04  Aligned_cols=142  Identities=19%  Similarity=0.102  Sum_probs=99.0

Q ss_pred             ccccCCCCCceeeeecee-----e--eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC--
Q 030931            2 LRVKQPYCTSCTLVKFYL-----L--FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD--   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-----~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~--   72 (169)
                      +++..++|||||++++..     .  ...|+.+....+..++..+.+||||||+.|..++...++.+|++++|+|+++  
T Consensus         9 IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~   88 (501)
T 1zo1_I            9 IMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGV   88 (501)
T ss_dssp             EEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBS
T ss_pred             EECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCc
Confidence            566889999999998722     1  1223333334455567789999999999999999999999999999999987  


Q ss_pred             -hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC--CCCC--ceeEEEEeeeccCCCHHHHHH
Q 030931           73 -RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF--DLKN--RKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus        73 -~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                       +.+.+.+    .....    .+.|+++++||+|+.+.. .+.+...+...  ....  ..++++++||++|.|++++|+
T Consensus        89 ~~qT~e~l----~~~~~----~~vPiIVviNKiDl~~~~-~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle  159 (501)
T 1zo1_I           89 MPQTIEAI----QHAKA----AQVPVVVAVNKIDKPEAD-PDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLD  159 (501)
T ss_dssp             CTTTHHHH----HHHHH----TTCCEEEEEECSSSSTTC-CCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHH
T ss_pred             cHHHHHHH----HHHHh----cCceEEEEEEeccccccC-HHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhh
Confidence             3333332    22211    368999999999997532 12222222110  0111  236899999999999999999


Q ss_pred             HHHHH
Q 030931          148 WLAST  152 (169)
Q Consensus       148 ~l~~~  152 (169)
                      ++...
T Consensus       160 ~I~~~  164 (501)
T 1zo1_I          160 AILLQ  164 (501)
T ss_dssp             HTTTT
T ss_pred             hhhhh
Confidence            98753

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.79  E-value=5.5e-20  Score=135.03  Aligned_cols=144  Identities=13%  Similarity=0.011  Sum_probs=96.1

Q ss_pred             ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCC-C--------chhhHHhhccCCCEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQE-K--------LRPLWRHYFNNTDGL   64 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~-~--------~~~~~~~~~~~~~~i   64 (169)
                      |++.+|+|||||++++....        ..|.......+..++..+.+|||||+. .        +......+++.+|++
T Consensus        13 IvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~v   92 (301)
T 1ega_A           13 IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELV   92 (301)
T ss_dssp             EECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEE
T ss_pred             EECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEE
Confidence            56789999999999873221        122222233456688999999999997 2        222335567899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCCCCCcee-EEEEeeeccCCCH
Q 030931           65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKW-HIQGTCALKGDGL  142 (169)
Q Consensus        65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi  142 (169)
                      ++|+|.++   +.....++...+..   .+.|+++++||+|+... ....+....+.    ...++ .++++||+++.|+
T Consensus        93 l~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~----~~~~~~~~i~iSA~~g~~v  162 (301)
T 1ega_A           93 IFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLA----SQMNFLDIVPISAETGLNV  162 (301)
T ss_dssp             EEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHH----TTSCCSEEEECCTTTTTTH
T ss_pred             EEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHH----HhcCcCceEEEECCCCCCH
Confidence            99999976   22333444444432   36899999999998651 11112222221    11223 6899999999999


Q ss_pred             HHHHHHHHHHHHh
Q 030931          143 YEGLDWLASTLKE  155 (169)
Q Consensus       143 ~~~~~~l~~~~~~  155 (169)
                      +++++++...+.+
T Consensus       163 ~~l~~~i~~~l~~  175 (301)
T 1ega_A          163 DTIAAIVRKHLPE  175 (301)
T ss_dssp             HHHHHHHHTTCCB
T ss_pred             HHHHHHHHHhCCc
Confidence            9999999876654

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.78  E-value=8.6e-20  Score=138.73  Aligned_cols=150  Identities=15%  Similarity=0.021  Sum_probs=102.4

Q ss_pred             ccccCCCCCceeeeecee-----------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931            2 LRVKQPYCTSCTLVKFYL-----------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF   58 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-----------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   58 (169)
                      +++..++|||||++++..                       ....|++.....+..++..+.+||||||+.|......++
T Consensus         8 iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~   87 (397)
T 1d2e_A            8 TIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGT   87 (397)
T ss_dssp             EESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTS
T ss_pred             EEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhH
Confidence            456889999999998732                       123455555556667889999999999999988888899


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-----hHHHhhhCCCCCCCceeEEE
Q 030931           59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-----MEVCEGLGLFDLKNRKWHIQ  132 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~~  132 (169)
                      +.+|++|+|+|+++..... ...++..+..    .++| +++++||+|+.+....     .++.+.+.........++++
T Consensus        88 ~~aD~~ilVvda~~g~~~q-t~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i  162 (397)
T 1d2e_A           88 APLDGCILVVAANDGPMPQ-TREHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPII  162 (397)
T ss_dssp             SCCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEE
T ss_pred             hhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEE
Confidence            9999999999998754333 2333333321    2677 7899999999742110     12222221111111245799


Q ss_pred             EeeeccCCC----------HHHHHHHHHHHHHhh
Q 030931          133 GTCALKGDG----------LYEGLDWLASTLKEM  156 (169)
Q Consensus       133 ~~Sa~~~~g----------i~~~~~~l~~~~~~~  156 (169)
                      ++||++|.|          +.++++.+...+...
T Consensus       163 ~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p  196 (397)
T 1d2e_A          163 VGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP  196 (397)
T ss_dssp             ECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred             EeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence            999999775          888888888766543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.78  E-value=4.6e-20  Score=140.78  Aligned_cols=146  Identities=12%  Similarity=0.019  Sum_probs=100.1

Q ss_pred             ccccCCCCCceeeeece--------eeeee--eeeEEEEEEEE------------------C-----CEEEEEEEcCCCC
Q 030931            2 LRVKQPYCTSCTLVKFY--------LLFLL--LVRFNVEKVQY------------------K-----NVIFTVWDVGGQE   48 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~--------~~~~~--t~~~~~~~~~~------------------~-----~~~~~i~D~~G~~   48 (169)
                      +++..++|||||++++.        ++..+  |+...+..+.+                  +     ...+.+||||||+
T Consensus        15 iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~   94 (410)
T 1kk1_A           15 MVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHE   94 (410)
T ss_dssp             EECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHH
T ss_pred             EECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChH
Confidence            45688999999999873        22223  66554443332                  1     2789999999999


Q ss_pred             CchhhHHhhccCCCEEEEEEECCCh----hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhC
Q 030931           49 KLRPLWRHYFNNTDGLIYVVDSLDR----ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLG  120 (169)
Q Consensus        49 ~~~~~~~~~~~~~~~ii~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~  120 (169)
                      .|.......+..+|++|+|+|+++.    ++.+.+.. +..+      ...|+++++||+|+.+...    .+++.+.+.
T Consensus        95 ~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~-~~~~------~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~  167 (410)
T 1kk1_A           95 ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA-LQII------GQKNIIIAQNKIELVDKEKALENYRQIKEFIE  167 (410)
T ss_dssp             HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH-HHHH------TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH-HHHc------CCCcEEEEEECccCCCHHHHHHHHHHHHHHHH
Confidence            9888888888899999999999853    33333322 2221      2358999999999875321    122222222


Q ss_pred             CCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          121 LFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       121 ~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      ..  ....++++++||++|.|++++++++...+...
T Consensus       168 ~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p  201 (410)
T 1kk1_A          168 GT--VAENAPIIPISALHGANIDVLVKAIEDFIPTP  201 (410)
T ss_dssp             TS--TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             hc--CcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            11  12356799999999999999999999876644

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.78  E-value=8.1e-20  Score=139.22  Aligned_cols=149  Identities=15%  Similarity=0.096  Sum_probs=101.4

Q ss_pred             ccccCCCCCceeeeeceee------------------------eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhh
Q 030931            2 LRVKQPYCTSCTLVKFYLL------------------------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHY   57 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~------------------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   57 (169)
                      +++..++|||||++++...                        ...|+......+..++..+.+||||||+.|......+
T Consensus        16 iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~   95 (405)
T 2c78_A           16 TIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITG   95 (405)
T ss_dssp             EECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHH
Confidence            4568899999999987431                        1123444455566678999999999999999888899


Q ss_pred             ccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-Hh----HHHhhhCCCCCCCceeEE
Q 030931           58 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMT-PM----EVCEGLGLFDLKNRKWHI  131 (169)
Q Consensus        58 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~~  131 (169)
                      ++.+|++|+|+|+++... .....++..+..    .+.| +++++||+|+.+... .+    ++.+.+.........+++
T Consensus        96 ~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  170 (405)
T 2c78_A           96 AAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPV  170 (405)
T ss_dssp             HTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCE
T ss_pred             HHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCE
Confidence            999999999999987543 344555544432    2577 899999999974211 11    121211111111123579


Q ss_pred             EEeeeccCCC------------------HHHHHHHHHHHHHh
Q 030931          132 QGTCALKGDG------------------LYEGLDWLASTLKE  155 (169)
Q Consensus       132 ~~~Sa~~~~g------------------i~~~~~~l~~~~~~  155 (169)
                      +++||++|.|                  +.++++.+...+..
T Consensus       171 i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~  212 (405)
T 2c78_A          171 IRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT  212 (405)
T ss_dssp             EECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred             EEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence            9999999987                  66777777665543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.78  E-value=2.5e-19  Score=137.56  Aligned_cols=116  Identities=16%  Similarity=0.044  Sum_probs=78.1

Q ss_pred             EEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931           27 FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM  106 (169)
Q Consensus        27 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  106 (169)
                      ..+..+...+.++.+||||||+.|...+..+++.+|++|+|+|+++... .....++..+...   ...|+++|+||+|+
T Consensus        94 ~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl  169 (434)
T 1zun_B           94 VAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDL  169 (434)
T ss_dssp             CEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTT
T ss_pred             eeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcC
Confidence            3445566788999999999999999888889999999999999987542 2333343333211   23479999999999


Q ss_pred             CCCCC--HhHHHhhhCC--CCCC--CceeEEEEeeeccCCCHHHHH
Q 030931          107 KGAMT--PMEVCEGLGL--FDLK--NRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus       107 ~~~~~--~~~~~~~~~~--~~~~--~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      .+...  .+++...+..  ....  ...++++++||++|.|+.+++
T Consensus       170 ~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~  215 (434)
T 1zun_B          170 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS  215 (434)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred             CcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence            75321  1111111110  0011  234789999999999998853

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.78  E-value=5.7e-20  Score=142.87  Aligned_cols=140  Identities=14%  Similarity=0.080  Sum_probs=92.5

Q ss_pred             ccccCCCCCceeeeeceee--------------------------------------eeeeeeEEEEEEEECCEEEEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLL--------------------------------------FLLLVRFNVEKVQYKNVIFTVWD   43 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~--------------------------------------~~~t~~~~~~~~~~~~~~~~i~D   43 (169)
                      +++..++|||||++++...                                      ...|+......+..+++.+.|||
T Consensus        38 iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiD  117 (483)
T 3p26_A           38 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVD  117 (483)
T ss_dssp             EESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEEEEEC
T ss_pred             EECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceEEEEE
Confidence            4568899999999987211                                      12344455666777899999999


Q ss_pred             cCCCCCchhhHHhhccCCCEEEEEEECCChhhHHH------HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHH
Q 030931           44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK------AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEV  115 (169)
Q Consensus        44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~------~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~  115 (169)
                      |||+++|...+..+++.+|++|+|+|+++...+..      ....+. ++..  ....|+++|+||+|+.+...  .+++
T Consensus       118 TPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~-~~~~--~~~~~iIvviNK~Dl~~~~~~~~~~i  194 (483)
T 3p26_A          118 APGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASS--LGIHNLIIAMNKMDNVDWSQQRFEEI  194 (483)
T ss_dssp             CCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHH-HHHH--TTCCCEEEEEECGGGGTTCHHHHHHH
T ss_pred             CCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHH-HHHH--cCCCcEEEEEECcCcccchHHHHHHH
Confidence            99999999999999999999999999988643321      122221 2221  12357999999999975221  1222


Q ss_pred             HhhhC----CCCCCCceeEEEEeeeccCCCHHH
Q 030931          116 CEGLG----LFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus       116 ~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      ...+.    ........++++++||++|.|+.+
T Consensus       195 ~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          195 KSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            22111    001122357899999999999975

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.77  E-value=3.4e-19  Score=127.91  Aligned_cols=112  Identities=24%  Similarity=0.344  Sum_probs=90.5

Q ss_pred             cCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHH---HHhcCC-CCCCCeEEEEEeC-CCCCCCCCHhHHHhh
Q 030931           44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ---AIIKDP-FMLNSVILVFANK-QDMKGAMTPMEVCEG  118 (169)
Q Consensus        44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~---~~~~~~-~~~~~piivv~nK-~Dl~~~~~~~~~~~~  118 (169)
                      .+||+.++..|..||+++|++|||+|++|+++++ ....+.   .++++. ...+.|++|++|| .|++++.+..++.+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            4789999999999999999999999999988765 333333   444432 2468999999996 699999999999999


Q ss_pred             hCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          119 LGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       119 ~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      +++..+ .+.|.+..|||.+|+|+.+.++|++..+..++
T Consensus       273 L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~  310 (312)
T 3l2o_B          273 LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESKR  310 (312)
T ss_dssp             TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred             cCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence            998766 47899999999999999999999998876544

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.77  E-value=6.1e-19  Score=126.84  Aligned_cols=150  Identities=15%  Similarity=0.076  Sum_probs=96.7

Q ss_pred             ccccCCCCCceeeeecee------eee---eeeeEEEEEEEECCEEEEEEEcCCCCCchh-----------hHHhhccCC
Q 030931            2 LRVKQPYCTSCTLVKFYL------LFL---LLVRFNVEKVQYKNVIFTVWDVGGQEKLRP-----------LWRHYFNNT   61 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~------~~~---~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~~~~~~~   61 (169)
                      |++.+|+|||||++++..      ...   .|.......+.+.+..+.+|||||+..+..           ....+++.+
T Consensus        27 lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~  106 (260)
T 2xtp_A           27 LVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGP  106 (260)
T ss_dssp             EEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCC
T ss_pred             EECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCC
Confidence            567899999999998722      122   244445556777899999999999865432           223367899


Q ss_pred             CEEEEEEECCChhhH-HHHHHHHHHHhcCCCCCCCeEEEEEe-CCCCCCCCCHhH------------HHhhhCCCCCCCc
Q 030931           62 DGLIYVVDSLDRERI-GKAKQEFQAIIKDPFMLNSVILVFAN-KQDMKGAMTPME------------VCEGLGLFDLKNR  127 (169)
Q Consensus        62 ~~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~piivv~n-K~Dl~~~~~~~~------------~~~~~~~~~~~~~  127 (169)
                      |++++|+|+++.... ..+..++.......  ...|+++++| |+|+.+. ....            +...++..   ..
T Consensus       107 d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~---~~  180 (260)
T 2xtp_A          107 HVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGR---IC  180 (260)
T ss_dssp             SEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTC---EE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCe---EE
Confidence            999999999863322 23334555543311  1345555555 9999743 2222            22222110   00


Q ss_pred             eeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          128 KWHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       128 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      .+..+++||+++.|++++|+++.+.+....
T Consensus       181 ~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          181 AFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            011288999999999999999999887654

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.75  E-value=4.7e-18  Score=136.87  Aligned_cols=103  Identities=19%  Similarity=0.122  Sum_probs=80.0

Q ss_pred             ccccCCCCCceeeeecee-------------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931            2 LRVKQPYCTSCTLVKFYL-------------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH   56 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   56 (169)
                      |++..++|||||++++..                         .+.+|+......+.+.++.+++|||||+..|...+..
T Consensus        17 IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~   96 (691)
T 1dar_A           17 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVER   96 (691)
T ss_dssp             EEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchHHHHHH
Confidence            466889999999998731                         3356666667778889999999999999999999999


Q ss_pred             hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931           57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  109 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  109 (169)
                      +++.+|++|+|+|+++..+......|.. +..    .+.|+++|+||+|+...
T Consensus        97 ~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           97 SMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             HHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred             HHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCcccC
Confidence            9999999999999998777766555543 322    37899999999999754

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.75  E-value=1.5e-18  Score=135.92  Aligned_cols=103  Identities=16%  Similarity=0.205  Sum_probs=75.1

Q ss_pred             ccccCCCCCceeeeeceee--e---------------------------eeeeeEEEEEEEECCEEEEEEEcCCCCCchh
Q 030931            2 LRVKQPYCTSCTLVKFYLL--F---------------------------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRP   52 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~--~---------------------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~   52 (169)
                      +++..++|||||++++...  .                           ..|+......+.++++.+++|||||++.|..
T Consensus        18 IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~   97 (529)
T 2h5e_A           18 IISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSE   97 (529)
T ss_dssp             EEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCSTTCCH
T ss_pred             EECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHHH
Confidence            4668899999999987321  0                           0112222345777899999999999999999


Q ss_pred             hHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931           53 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  109 (169)
Q Consensus        53 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  109 (169)
                      .+..+++.+|++|+|+|+++.... ....++..+ .   ..++|+++++||+|+...
T Consensus        98 ~~~~~l~~aD~~IlVvDa~~g~~~-~t~~~~~~~-~---~~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           98 DTYRTLTAVDCCLMVIDAAKGVED-RTRKLMEVT-R---LRDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             HHHHGGGGCSEEEEEEETTTCSCH-HHHHHHHHH-T---TTTCCEEEEEECTTSCCS
T ss_pred             HHHHHHHHCCEEEEEEeCCccchH-HHHHHHHHH-H---HcCCCEEEEEcCcCCccc
Confidence            899999999999999999875332 223333333 2   247899999999999764

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.75  E-value=8.2e-20  Score=145.15  Aligned_cols=141  Identities=15%  Similarity=0.097  Sum_probs=95.3

Q ss_pred             ccccCCCCCceeeeeceee--------------------------------------eeeeeeEEEEEEEECCEEEEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLL--------------------------------------FLLLVRFNVEKVQYKNVIFTVWD   43 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~--------------------------------------~~~t~~~~~~~~~~~~~~~~i~D   43 (169)
                      +++..++|||||++++...                                      ...|+......+..+++.+.|||
T Consensus       172 ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~~~iiD  251 (611)
T 3izq_1          172 VLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANFTIVD  251 (611)
T ss_dssp             EECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCEEEEEE
T ss_pred             EEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCceEEEEE
Confidence            4678999999999987321                                      23355566677888899999999


Q ss_pred             cCCCCCchhhHHhhccCCCEEEEEEECCChh---hH---HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHH
Q 030931           44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RI---GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEV  115 (169)
Q Consensus        44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~  115 (169)
                      |||+++|...+..+++.+|++|+|+|+++..   ++   ......+..+ ..  ....|+++|+||+|+.+...  .+++
T Consensus       252 TPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~--lgi~~iIVVvNKiDl~~~~~~~~~ei  328 (611)
T 3izq_1          252 APGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SS--LGIHNLIIAMNKMDNVDWSQQRFEEI  328 (611)
T ss_dssp             CCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HT--TTCCEEEEEEECTTTTTTCHHHHHHH
T ss_pred             CCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HH--cCCCeEEEEEecccccchhHHHHHHH
Confidence            9999999999999999999999999997632   11   1122222222 21  12356999999999975211  1111


Q ss_pred             Hhhh----CCCCCCCceeEEEEeeeccCCCHHHH
Q 030931          116 CEGL----GLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus       116 ~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      ...+    .........++++++||++|.|+.++
T Consensus       329 ~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          329 KSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            1111    10001122468999999999999876

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.74  E-value=1.7e-19  Score=130.88  Aligned_cols=148  Identities=12%  Similarity=0.105  Sum_probs=80.7

Q ss_pred             CccccCCCCCceeeeec------eeee-------eeeeeEEEEEEEE--C--CEEEEEEEcCCCC-------CchhhH--
Q 030931            1 MLRVKQPYCTSCTLVKF------YLLF-------LLLVRFNVEKVQY--K--NVIFTVWDVGGQE-------KLRPLW--   54 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f------~~~~-------~~t~~~~~~~~~~--~--~~~~~i~D~~G~~-------~~~~~~--   54 (169)
                      +|.+.+|+|||||+|++      ...+       .+|++........  +  .+++.+|||||..       .+..+.  
T Consensus        12 ~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~   91 (274)
T 3t5d_A           12 MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDY   91 (274)
T ss_dssp             EEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHH
Confidence            46789999999999973      2333       6777766655444  2  3699999999973       334433  


Q ss_pred             -----HhhccC-------------CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH
Q 030931           55 -----RHYFNN-------------TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVC  116 (169)
Q Consensus        55 -----~~~~~~-------------~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~  116 (169)
                           ..+++.             +|+++++++.+.......-..++..+ ..    +.|+++|+||+|+..........
T Consensus        92 i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~e~~~~~  166 (274)
T 3t5d_A           92 IDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPEECQQFK  166 (274)
T ss_dssp             HHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHHHHHHHH
Confidence                 344443             78999999776532222223444444 21    78999999999985432222111


Q ss_pred             hhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931          117 EGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK  154 (169)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  154 (169)
                      ..+. ..+...+++++++||++++|+.++++++.+.+.
T Consensus       167 ~~i~-~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          167 KQIM-KEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             HHHH-HHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred             HHHH-HHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence            1111 111234556899999999999999999887543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.74  E-value=3.8e-19  Score=137.33  Aligned_cols=140  Identities=14%  Similarity=0.059  Sum_probs=94.8

Q ss_pred             ccccCCCCCceeeeeceee--------------------------------------eeeeeeEEEEEEEECCEEEEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLL--------------------------------------FLLLVRFNVEKVQYKNVIFTVWD   43 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~--------------------------------------~~~t~~~~~~~~~~~~~~~~i~D   43 (169)
                      +++..++|||||++++...                                      ...|+...+..++..++.+.+||
T Consensus        12 iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~~iiD   91 (458)
T 1f60_A           12 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVID   91 (458)
T ss_dssp             EEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEEEEEE
T ss_pred             EEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceEEEEE
Confidence            4568899999999987321                                      23466666677888899999999


Q ss_pred             cCCCCCchhhHHhhccCCCEEEEEEECCChh---hHH---HHHHHHHHHhcCCCCCCC-eEEEEEeCCCCCCCCC--HhH
Q 030931           44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RIG---KAKQEFQAIIKDPFMLNS-VILVFANKQDMKGAMT--PME  114 (169)
Q Consensus        44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~-piivv~nK~Dl~~~~~--~~~  114 (169)
                      ||||+.|...+..+++.+|++|+|+|+++..   +|+   ....++.....    .+. ++++|+||+|+.+...  .++
T Consensus        92 tPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~~~~~~~~~  167 (458)
T 1f60_A           92 APGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKWDESRFQE  167 (458)
T ss_dssp             CCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTTCHHHHHH
T ss_pred             CCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccccCCHHHHHH
Confidence            9999999999999999999999999997642   221   22222222211    245 4999999999973211  111


Q ss_pred             HHhhh----CCCCCCCceeEEEEeeeccCCCHHHH
Q 030931          115 VCEGL----GLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus       115 ~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      +...+    .........++++++||++|.|+.++
T Consensus       168 i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          168 IVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             HHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             HHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            11111    10001112367999999999999754

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.74  E-value=2.1e-19  Score=139.03  Aligned_cols=141  Identities=11%  Similarity=0.007  Sum_probs=80.7

Q ss_pred             ccccCCCCCceeeeecee--------------------------------------eeeeeeeEEEEEEEECCEEEEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYL--------------------------------------LFLLLVRFNVEKVQYKNVIFTVWD   43 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~--------------------------------------~~~~t~~~~~~~~~~~~~~~~i~D   43 (169)
                      +++..++|||||++++..                                      ...+|++..+..+..++.++.|||
T Consensus        48 iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~~iiD  127 (467)
T 1r5b_A           48 FIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLD  127 (467)
T ss_dssp             EEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEEEECC
T ss_pred             EEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEEEEEE
Confidence            456789999999987621                                      134566666666777899999999


Q ss_pred             cCCCCCchhhHHhhccCCCEEEEEEECCChh---hHH---HHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCC-CH---
Q 030931           44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RIG---KAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAM-TP---  112 (169)
Q Consensus        44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~-~~---  112 (169)
                      ||||+.|...+...++.+|++|+|+|+++..   +|+   .....+....    ..++| +++++||+|+.+.. +.   
T Consensus       128 tPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~----~~~vp~iivviNK~Dl~~~~~~~~~~  203 (467)
T 1r5b_A          128 APGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR----TQGINHLVVVINKMDEPSVQWSEERY  203 (467)
T ss_dssp             CCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH----HTTCSSEEEEEECTTSTTCSSCHHHH
T ss_pred             CCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH----HcCCCEEEEEEECccCCCccccHHHH
Confidence            9999999998888999999999999998752   222   1111122211    12566 99999999996421 11   


Q ss_pred             h----HHHhhhCCC-CCC-CceeEEEEeeeccCCCHHHHH
Q 030931          113 M----EVCEGLGLF-DLK-NRKWHIQGTCALKGDGLYEGL  146 (169)
Q Consensus       113 ~----~~~~~~~~~-~~~-~~~~~~~~~Sa~~~~gi~~~~  146 (169)
                      +    ++...+... ... ...++++++||++|.|+.+++
T Consensus       204 ~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          204 KECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            1    122211100 001 125789999999999998765

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.74  E-value=2.5e-18  Score=125.78  Aligned_cols=113  Identities=17%  Similarity=0.113  Sum_probs=75.8

Q ss_pred             CEEEEEEEcCCCC-------------CchhhHHhhccCCCEEE-EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030931           36 NVIFTVWDVGGQE-------------KLRPLWRHYFNNTDGLI-YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFA  101 (169)
Q Consensus        36 ~~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~ii-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~  101 (169)
                      ...+.+|||||..             .+..+...+++.+++++ +|+|.++..+......++..+.    ..+.|+++|+
T Consensus       124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~----~~~~~~i~V~  199 (299)
T 2aka_B          124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVI  199 (299)
T ss_dssp             CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEEE
T ss_pred             CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC----CCCCeEEEEE
Confidence            4789999999964             34456777888998777 7999977544433334554442    1468999999


Q ss_pred             eCCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931          102 NKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus       102 nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                      ||+|+.+... ..+..... .........+++++||++|.|++++++++....
T Consensus       200 NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          200 TKLDLMDEGTDARDVLENK-LLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             ECGGGSCTTCCCHHHHTTC-SSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             EccccCCCCchHHHHHhCC-cCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            9999865432 12221110 011111234789999999999999999998743

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.73  E-value=3e-19  Score=134.12  Aligned_cols=148  Identities=16%  Similarity=0.080  Sum_probs=77.1

Q ss_pred             CccccCCCCCceeeeec------eeee--------eeeeeEEEEEE--EEC--CEEEEEEEcCCC-------CCchhhHH
Q 030931            1 MLRVKQPYCTSCTLVKF------YLLF--------LLLVRFNVEKV--QYK--NVIFTVWDVGGQ-------EKLRPLWR   55 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f------~~~~--------~~t~~~~~~~~--~~~--~~~~~i~D~~G~-------~~~~~~~~   55 (169)
                      +|++..|+|||||++++      ...+        .+|+++....+  ...  ...+.+|||||+       +.+..++.
T Consensus        41 ~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~  120 (361)
T 2qag_A           41 MVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIIS  120 (361)
T ss_dssp             EECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCTHH
T ss_pred             EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHH
Confidence            36788999999999983      1111        25666554443  223  358999999999       77777765


Q ss_pred             -------hhccCCCEE-----------EEEEECCC-hhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHH
Q 030931           56 -------HYFNNTDGL-----------IYVVDSLD-RERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEV  115 (169)
Q Consensus        56 -------~~~~~~~~i-----------i~v~d~~~-~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~  115 (169)
                             .+++.++++           +++|++++ ..++.... .++..+ .    .+.|+++|+||+|+.+.   .++
T Consensus       121 ~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~----~~~piIlV~NK~Dl~~~---~ev  192 (361)
T 2qag_A          121 YIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-H----NKVNIVPVIAKADTLTL---KER  192 (361)
T ss_dssp             HHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-C----S-SCEEEEEECCSSSCH---HHH
T ss_pred             HHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-c----cCCCEEEEEECCCCCCH---HHH
Confidence                   666554432           24444443 34454444 344433 2    47899999999998643   222


Q ss_pred             Hh--hhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          116 CE--GLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       116 ~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      ..  ......+...+++++++||+++.| ++.|.++...+.+..
T Consensus       193 ~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i  235 (361)
T 2qag_A          193 ERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI  235 (361)
T ss_dssp             HHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence            21  011112345567899999999999 899999988887654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.72  E-value=4e-18  Score=118.58  Aligned_cols=144  Identities=15%  Similarity=0.037  Sum_probs=88.3

Q ss_pred             ccccCCCCCceeeeeceeee-----eeeeeEEE--EEEEECCEEEEEEEcCCCCC----------chhhHHhhc---cCC
Q 030931            2 LRVKQPYCTSCTLVKFYLLF-----LLLVRFNV--EKVQYKNVIFTVWDVGGQEK----------LRPLWRHYF---NNT   61 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~-----~~t~~~~~--~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~---~~~   61 (169)
                      |++..|+|||||++++....     .|+.|...  ..+..++ .+.+|||||+..          +......++   +.+
T Consensus        31 lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (210)
T 1pui_A           31 FAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSL  109 (210)
T ss_dssp             EEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTE
T ss_pred             EECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcc
Confidence            56789999999999886544     56666432  2233333 588999999853          222333444   478


Q ss_pred             CEEEEEEECCChhhHHH--HHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----hHHHhhhCCCCCCCceeEEEEee
Q 030931           62 DGLIYVVDSLDRERIGK--AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----MEVCEGLGLFDLKNRKWHIQGTC  135 (169)
Q Consensus        62 ~~ii~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~S  135 (169)
                      +++++++|+++..+...  +..|+..       .+.|+++++||+|+......    ......+. .  ....+.++++|
T Consensus       110 ~~~~~v~d~~~~~~~~~~~~~~~~~~-------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~-~--~~~~~~~~~~S  179 (210)
T 1pui_A          110 QGLVVLMDIRHPLKDLDQQMIEWAVD-------SNIAVLVLLTKADKLASGARKAQLNMVREAVL-A--FNGDVQVETFS  179 (210)
T ss_dssp             EEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHG-G--GCSCEEEEECB
T ss_pred             cEEEEEEECCCCCchhHHHHHHHHHH-------cCCCeEEEEecccCCCchhHHHHHHHHHHHHH-h--cCCCCceEEEe
Confidence            99999999987655432  2233321       36899999999997532111    11111111 0  11235689999


Q ss_pred             eccCCCHHHHHHHHHHHHHhh
Q 030931          136 ALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       136 a~~~~gi~~~~~~l~~~~~~~  156 (169)
                      |+++.|++++++++.+.+.+.
T Consensus       180 al~~~~~~~l~~~l~~~~~~~  200 (210)
T 1pui_A          180 SLKKQGVDKLRQKLDTWFSEM  200 (210)
T ss_dssp             TTTTBSHHHHHHHHHHHHC--
T ss_pred             ecCCCCHHHHHHHHHHHHhhc
Confidence            999999999999998876553

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.72  E-value=4.9e-17  Score=131.20  Aligned_cols=103  Identities=13%  Similarity=0.075  Sum_probs=78.7

Q ss_pred             ccccCCCCCceeeeecee-------------------------eeeeeeeEEEEEEEECC-------EEEEEEEcCCCCC
Q 030931            2 LRVKQPYCTSCTLVKFYL-------------------------LFLLLVRFNVEKVQYKN-------VIFTVWDVGGQEK   49 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------------------------~~~~t~~~~~~~~~~~~-------~~~~i~D~~G~~~   49 (169)
                      +++..++|||||++++..                         ....|+......+.+++       +.++||||||+..
T Consensus        15 IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~d   94 (704)
T 2rdo_7           15 ISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVD   94 (704)
T ss_pred             EECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCccc
Confidence            567899999999998721                         12345555556666665       9999999999999


Q ss_pred             chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931           50 LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  109 (169)
Q Consensus        50 ~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  109 (169)
                      |...+..+++.+|++|+|+|+++.........| .....    .++|+++++||+|+...
T Consensus        95 f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           95 FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK----YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCCCEEEEEeCCCcccc
Confidence            999999999999999999999876554443333 33322    36899999999998654

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.71  E-value=4.6e-17  Score=131.23  Aligned_cols=103  Identities=14%  Similarity=0.078  Sum_probs=78.8

Q ss_pred             ccccCCCCCceeeeecee-------------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931            2 LRVKQPYCTSCTLVKFYL-------------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH   56 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   56 (169)
                      |++..++|||||++++..                         ....|+......+.++++.+++|||||+..|...+..
T Consensus        15 IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~   94 (693)
T 2xex_A           15 IMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVER   94 (693)
T ss_dssp             EECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCCHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHH
Confidence            466899999999998731                         1233444455667788999999999999999999999


Q ss_pred             hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931           57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  109 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  109 (169)
                      +++.+|++++|+|+++..+......|. .+..    .+.|+++|+||+|+...
T Consensus        95 ~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~----~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           95 SLRVLDGAVTVLDAQSGVEPQTETVWR-QATT----YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             HHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTTC
T ss_pred             HHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH----cCCCEEEEEECCCcccc
Confidence            999999999999998876666554443 3322    37899999999999764

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.71  E-value=2.2e-17  Score=132.61  Aligned_cols=101  Identities=14%  Similarity=0.107  Sum_probs=76.7

Q ss_pred             ccccCCCCCceeeeeceeee-------------------------eeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931            2 LRVKQPYCTSCTLVKFYLLF-------------------------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH   56 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~-------------------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   56 (169)
                      |++..|+|||||++++....                         ..|+......+..+.+.+++|||||++.|...+..
T Consensus        14 IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~   93 (665)
T 2dy1_A           14 LVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRG   93 (665)
T ss_dssp             EEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHH
T ss_pred             EECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHH
Confidence            46688999999999873111                         12333455567778999999999999999999999


Q ss_pred             hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      +++.+|++++|+|+++..... ...++..+..    .+.|+++++||+|+.
T Consensus        94 ~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           94 ALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             HHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             HHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence            999999999999987654333 2344444432    368999999999987

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.70  E-value=5.5e-19  Score=140.05  Aligned_cols=138  Identities=17%  Similarity=0.143  Sum_probs=72.1

Q ss_pred             ccccCCCCCceeeeecee--------------------------------------eeeeeeeEEEEEEEECCEEEEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYL--------------------------------------LFLLLVRFNVEKVQYKNVIFTVWD   43 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~--------------------------------------~~~~t~~~~~~~~~~~~~~~~i~D   43 (169)
                      +++..++|||||++++..                                      ....|+...+..+..++..+.|||
T Consensus       182 iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~iiD  261 (592)
T 3mca_A          182 VTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGD  261 (592)
T ss_dssp             EECCSSSTHHHHHHHHHHHHHCC------------------------------------------------------CCE
T ss_pred             EEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEEEEE
Confidence            467889999999998711                                      122344455556666788999999


Q ss_pred             cCCCCCchhhHHhhccCCCEEEEEEECCChh---hH---HHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC--H--
Q 030931           44 VGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RI---GKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMT--P--  112 (169)
Q Consensus        44 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~--~--  112 (169)
                      ||||+.|.......++.+|++|+|+|+++..   .+   ......+..+..    .++| +++|+||+|+.+...  .  
T Consensus       262 TPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~~~~~~~~~  337 (592)
T 3mca_A          262 APGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMSWSEDRFQE  337 (592)
T ss_dssp             EESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGTTCHHHHHH
T ss_pred             CCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEeccccccccHHHHHH
Confidence            9999999888888899999999999997532   11   111111222211    2454 999999999865211  1  


Q ss_pred             --hHHHhhh-CCCCCCCceeEEEEeeeccCCCHH
Q 030931          113 --MEVCEGL-GLFDLKNRKWHIQGTCALKGDGLY  143 (169)
Q Consensus       113 --~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~  143 (169)
                        .++...+ .........++++++||++|.|+.
T Consensus       338 i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          338 IKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             HHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             HHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence              2222222 111112235689999999999998

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.70  E-value=4.1e-18  Score=141.42  Aligned_cols=149  Identities=19%  Similarity=0.115  Sum_probs=97.5

Q ss_pred             ccccCCCCCceeeeeceeee-------------------eeeeeEE----EEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931            2 LRVKQPYCTSCTLVKFYLLF-------------------LLLVRFN----VEKVQYKNVIFTVWDVGGQEKLRPLWRHYF   58 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~-------------------~~t~~~~----~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   58 (169)
                      +++..++|||||++++....                   ..+.|++    ...++.++..+.+||||||++|......++
T Consensus       301 IIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~ga  380 (1289)
T 3avx_A          301 TIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGA  380 (1289)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTS
T ss_pred             EEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHH
Confidence            46688999999999873310                   0122322    234555789999999999999998888899


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCCH-----hHHHhhhCCCCCCCceeEEE
Q 030931           59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMTP-----MEVCEGLGLFDLKNRKWHIQ  132 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~~  132 (169)
                      +.+|++|+|+|+++.... ....++..+..    .++| +++++||+|+.+....     .++.+.+.........++++
T Consensus       381 s~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~I  455 (1289)
T 3avx_A          381 AQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIV  455 (1289)
T ss_dssp             CCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEE
T ss_pred             hhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEE
Confidence            999999999999875322 23334433321    2577 8999999999752111     12222221111112246799


Q ss_pred             EeeeccC--------CCHHHHHHHHHHHHHh
Q 030931          133 GTCALKG--------DGLYEGLDWLASTLKE  155 (169)
Q Consensus       133 ~~Sa~~~--------~gi~~~~~~l~~~~~~  155 (169)
                      ++||++|        .|+.++++.+...+..
T Consensus       456 pvSAktG~ng~~~w~eGI~eLleaL~~~Ip~  486 (1289)
T 3avx_A          456 RGSALKALEGDAEWEAKILELAGFLDSYIPE  486 (1289)
T ss_dssp             ECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred             EEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence            9999999        4688888888776543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.70  E-value=1.2e-17  Score=118.78  Aligned_cols=153  Identities=12%  Similarity=-0.060  Sum_probs=88.7

Q ss_pred             ccccCCCCCceeeeecee-----ee----eeeeeEEEEEEEECCEEEEEEEcCCCC-----------CchhhHHhhccCC
Q 030931            2 LRVKQPYCTSCTLVKFYL-----LF----LLLVRFNVEKVQYKNVIFTVWDVGGQE-----------KLRPLWRHYFNNT   61 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-----~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~~~~~~~~~~   61 (169)
                      |++..|+|||||++++..     ..    ..|.......+.+.+..+.+|||||..           .+......+++++
T Consensus        34 lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (239)
T 3lxx_A           34 LVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGP  113 (239)
T ss_dssp             EECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCC
T ss_pred             EECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCC
Confidence            678999999999997622     12    223334555677789999999999954           2334445566788


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhC---CCCCCCceeEEEEeeec
Q 030931           62 DGLIYVVDSLDRERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMTPMEVCEGLG---LFDLKNRKWHIQGTCAL  137 (169)
Q Consensus        62 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~  137 (169)
                      +++++|+|+++....  ...++..+++.. .....|+++|+||+|+.+....++......   ....+..+..|+.+++.
T Consensus       114 ~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~  191 (239)
T 3lxx_A          114 HALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNK  191 (239)
T ss_dssp             SEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTT
T ss_pred             cEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECC
Confidence            999999998754332  122232222110 002469999999999865432221110000   00011222236666555


Q ss_pred             c-----CCCHHHHHHHHHHHHHhh
Q 030931          138 K-----GDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       138 ~-----~~gi~~~~~~l~~~~~~~  156 (169)
                      .     ..++.++|..+...+.+.
T Consensus       192 ~~~~~~~~~v~~ll~~i~~~~~~~  215 (239)
T 3lxx_A          192 ATGAEQEAQRAQLLGLIQRVVREN  215 (239)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCccccHHHHHHHHHHHHHHHHHc
Confidence            3     378999999888877653

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.67  E-value=5.8e-17  Score=123.31  Aligned_cols=151  Identities=19%  Similarity=0.134  Sum_probs=101.9

Q ss_pred             ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEECC-EEEEEEEcCCCCCch----hh---HHhhccCCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYKN-VIFTVWDVGGQEKLR----PL---WRHYFNNTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~----~~---~~~~~~~~~~ii~   66 (169)
                      |++.+|+|||||++.+...       ...|...+...+.... ..+.+||+||.....    .+   .....+.++.+++
T Consensus       162 LVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~  241 (416)
T 1udx_A          162 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLY  241 (416)
T ss_dssp             EECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEE
T ss_pred             EECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhE
Confidence            5678999999999987433       2233344444555554 789999999974321    11   1223467999999


Q ss_pred             EEECCChhhHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931           67 VVDSLDRERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        67 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      ++|++ ..++..+..+..++.... .+...|.++++||+|+.......++.+.+     ...++.++++||++++|++++
T Consensus       242 vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l-----~~~g~~vi~iSA~~g~gi~eL  315 (416)
T 1udx_A          242 VLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADAL-----AREGLAVLPVSALTGAGLPAL  315 (416)
T ss_dssp             EEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHH-----HTTTSCEEECCTTTCTTHHHH
T ss_pred             EeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHH-----HhcCCeEEEEECCCccCHHHH
Confidence            99998 566666666665554321 12367999999999986541112222222     123456999999999999999


Q ss_pred             HHHHHHHHHhhhc
Q 030931          146 LDWLASTLKEMRA  158 (169)
Q Consensus       146 ~~~l~~~~~~~~~  158 (169)
                      ++++.+.+.+...
T Consensus       316 ~~~i~~~l~~~~~  328 (416)
T 1udx_A          316 KEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHTSCC
T ss_pred             HHHHHHHHHhccc
Confidence            9999999987553

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.63  E-value=5.3e-16  Score=114.30  Aligned_cols=116  Identities=19%  Similarity=0.170  Sum_probs=72.3

Q ss_pred             CEEEEEEEcCCCCC-------------chhhHHhhccCCCEEEEEEECCChhhH-HHHHHHHHHHhcCCCCCCCeEEEEE
Q 030931           36 NVIFTVWDVGGQEK-------------LRPLWRHYFNNTDGLIYVVDSLDRERI-GKAKQEFQAIIKDPFMLNSVILVFA  101 (169)
Q Consensus        36 ~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~piivv~  101 (169)
                      ...+.+|||||...             +......+++.+|++++|+|.++.... .....+...+ ..   .+.|+++|+
T Consensus       130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~-~~---~~~~~i~v~  205 (315)
T 1jwy_B          130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-DP---EGKRTIGVI  205 (315)
T ss_dssp             SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-CS---SCSSEEEEE
T ss_pred             CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh-CC---CCCcEEEEE
Confidence            46799999999764             445667788999999999997433211 1111223333 22   368999999


Q ss_pred             eCCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeecc---CCCHHHHHHHHHHHHHhh
Q 030931          102 NKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALK---GDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       102 nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~~~~~l~~~~~~~  156 (169)
                      ||+|+.+... ..+..... ........+++..+|+.+   +.|+.++++.+...+...
T Consensus       206 NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~  263 (315)
T 1jwy_B          206 TKLDLMDKGTDAMEVLTGR-VIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH  263 (315)
T ss_dssp             ECTTSSCSSCCCHHHHTTS-SSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred             cCcccCCcchHHHHHHhCC-CccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence            9999865432 12221110 001112223455566777   899999999998888764

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.61  E-value=5.3e-16  Score=111.72  Aligned_cols=105  Identities=14%  Similarity=-0.009  Sum_probs=71.4

Q ss_pred             ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhcc---------CCCEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFN---------NTDGL   64 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---------~~~~i   64 (169)
                      +++..|+|||||++++....        ..|.......+..++..+.+|||||++.+......+++         +++++
T Consensus        41 lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~i  120 (262)
T 3def_A           41 VLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVL  120 (262)
T ss_dssp             EEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEE
T ss_pred             EECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEE
Confidence            56799999999999873221        22344555667788999999999999887655444443         78999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHhcCCC-CCCCeEEEEEeCCCCC
Q 030931           65 IYVVDSLDRERIGKA-KQEFQAIIKDPF-MLNSVILVFANKQDMK  107 (169)
Q Consensus        65 i~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~piivv~nK~Dl~  107 (169)
                      ++|+|++... +... ..|+..+.+... ....|+++|+||+|+.
T Consensus       121 l~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~  164 (262)
T 3def_A          121 LYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS  164 (262)
T ss_dssp             EEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred             EEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence            9999986543 3322 244444432111 1124999999999985

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.58  E-value=6.9e-16  Score=124.43  Aligned_cols=115  Identities=17%  Similarity=0.175  Sum_probs=78.8

Q ss_pred             EEEEEEEcCCCCC---chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--C
Q 030931           37 VIFTVWDVGGQEK---LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--T  111 (169)
Q Consensus        37 ~~~~i~D~~G~~~---~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~  111 (169)
                      ..+.+|||||...   ....+..+++.+|++++|+|+++..+......|...+ ..   .+.|+++|+||+|+....  +
T Consensus       174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l-~~---~~~~iiiVlNK~Dl~~~~~~~  249 (695)
T 2j69_A          174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI-KG---RGLTVFFLVNAWDQVRESLID  249 (695)
T ss_dssp             TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT-TT---SCCCEEEEEECGGGGGGGCSS
T ss_pred             CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH-Hh---hCCCEEEEEECcccccccccC
Confidence            4689999999654   3455667889999999999998887777665554433 21   267899999999985321  1


Q ss_pred             Hh---H-------HHh----hhCCCCCC-----CceeEEEEeeec--------------cCCCHHHHHHHHHHHHHhh
Q 030931          112 PM---E-------VCE----GLGLFDLK-----NRKWHIQGTCAL--------------KGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       112 ~~---~-------~~~----~~~~~~~~-----~~~~~~~~~Sa~--------------~~~gi~~~~~~l~~~~~~~  156 (169)
                      .+   +       +..    .+.. ...     ....+++++||+              ++.|+.++++++...+...
T Consensus       250 ~ee~e~l~~~~~~i~~~~~~~l~~-~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~  326 (695)
T 2j69_A          250 PDDVEELQASENRLRQVFNANLAE-YCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRE  326 (695)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHGG-GGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH-hhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHHh
Confidence            11   1       111    1110 001     123458999999              9999999999999877654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.58  E-value=3.9e-16  Score=117.23  Aligned_cols=110  Identities=17%  Similarity=0.213  Sum_probs=73.1

Q ss_pred             CEEEEEEEcCCCCCc-------------hhhHHhhccCCCEEEEEEECCChhhH-HHHHHHHHHHhcCCCCCCCeEEEEE
Q 030931           36 NVIFTVWDVGGQEKL-------------RPLWRHYFNNTDGLIYVVDSLDRERI-GKAKQEFQAIIKDPFMLNSVILVFA  101 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~piivv~  101 (169)
                      ...+.+|||||..++             ..+...+++.++++|+|+|..+.... .....++..+    ...+.|+++|+
T Consensus       135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~----~~~~~~~i~V~  210 (360)
T 3t34_A          135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV----DPSGDRTFGVL  210 (360)
T ss_dssp             SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHS----CTTCTTEEEEE
T ss_pred             CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHh----cccCCCEEEEE
Confidence            456899999998876             66777899999999999987654322 2222333333    22467999999


Q ss_pred             eCCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931          102 NKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus       102 nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                      ||+|+.+... ..+....    .....+.+|+++|+.++.++++.+.......
T Consensus       211 nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~  259 (360)
T 3t34_A          211 TKIDLMDKGTDAVEILEG----RSFKLKYPWVGVVNRSQADINKNVDMIAARK  259 (360)
T ss_dssp             ECGGGCCTTCCSHHHHTT----SSSCCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred             eCCccCCCcccHHHHHcC----ccccccCCeEEEEECChHHhccCCCHHHHHH
Confidence            9999865322 1222221    1233446799999999998887766544433

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.57  E-value=1.1e-14  Score=114.45  Aligned_cols=78  Identities=15%  Similarity=0.222  Sum_probs=63.1

Q ss_pred             EEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931           27 FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM  106 (169)
Q Consensus        27 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  106 (169)
                      .....+.+++++++|.|||||..|.......++-+|++|+|+|+...-.-.....| +.+.+    .++|+++++||+|.
T Consensus        90 s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----~~lp~i~fINK~Dr  164 (548)
T 3vqt_A           90 TSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----RATPVMTFVNKMDR  164 (548)
T ss_dssp             TTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTS
T ss_pred             eceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----hCCceEEEEecccc
Confidence            34566888999999999999999999999999999999999999775444443334 33333    37999999999998


Q ss_pred             CCC
Q 030931          107 KGA  109 (169)
Q Consensus       107 ~~~  109 (169)
                      ..+
T Consensus       165 ~~a  167 (548)
T 3vqt_A          165 EAL  167 (548)
T ss_dssp             CCC
T ss_pred             hhc
Confidence            754

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.53  E-value=2.7e-15  Score=112.41  Aligned_cols=111  Identities=16%  Similarity=0.106  Sum_probs=68.3

Q ss_pred             CEEEEEEEcCCCC-------------CchhhHHhhccCCCEEEE-EEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 030931           36 NVIFTVWDVGGQE-------------KLRPLWRHYFNNTDGLIY-VVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFA  101 (169)
Q Consensus        36 ~~~~~i~D~~G~~-------------~~~~~~~~~~~~~~~ii~-v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~  101 (169)
                      ...+.+|||||..             .+..+...|++.++.+|+ |.|.+....-.....++..+.    ..+.|+++|+
T Consensus       129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~----~~~~~~i~V~  204 (353)
T 2x2e_A          129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVD----PQGQRTIGVI  204 (353)
T ss_dssp             CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHC----TTCTTEEEEE
T ss_pred             CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhC----cCCCceEEEe
Confidence            4779999999963             234566677777766655 455543221112223444441    2478999999


Q ss_pred             eCCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931          102 NKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus       102 nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ||+|+.+... ..++..... ........+++++||+++.|++++++++..
T Consensus       205 NK~Dl~~~~~~~~~~~~~~~-~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          205 TKLDLMDEGTDARDVLENKL-LPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             ECGGGSCTTCCCHHHHTTCS-SCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             ccccccCcchhHHHHHhCCc-ccccCCceEEEeCCcccccccccHHHHHHH
Confidence            9999865422 122222111 111112246889999999999999999876

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.52  E-value=3.8e-15  Score=107.67  Aligned_cols=106  Identities=14%  Similarity=-0.045  Sum_probs=68.7

Q ss_pred             ccccCCCCCceeeeeceeee--------eeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHH-------hh--ccCCCEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF--------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWR-------HY--FNNTDGL   64 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~--------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~~--~~~~~~i   64 (169)
                      +++..|+|||||++++....        ..|.......+...+..+.+|||||++.+.....       .+  .+.+|++
T Consensus        44 vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~i  123 (270)
T 1h65_A           44 VMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVL  123 (270)
T ss_dssp             EEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEE
T ss_pred             EECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEE
Confidence            57799999999999873221        1122233445667899999999999977643221       11  3479999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHhcCCC-CCCCeEEEEEeCCCCCC
Q 030931           65 IYVVDSLDRERIGKA-KQEFQAIIKDPF-MLNSVILVFANKQDMKG  108 (169)
Q Consensus        65 i~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~piivv~nK~Dl~~  108 (169)
                      ++|+|++.. ++... ..|+..+.+... ....|+++|+||+|+..
T Consensus       124 l~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          124 LYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             EEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             EEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence            999998653 33322 345554433211 01269999999999864

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.52  E-value=6.7e-16  Score=115.72  Aligned_cols=110  Identities=15%  Similarity=0.095  Sum_probs=72.5

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-  113 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-  113 (169)
                      .++.+.||||||...   ......+.+|++++|+|....+.+..+        . ....+.|+++|+||+|+.+..... 
T Consensus       170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l--------~-~~~~~~p~ivVlNK~Dl~~~~~~~~  237 (355)
T 3p32_A          170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI--------K-KGVLELADIVVVNKADGEHHKEARL  237 (355)
T ss_dssp             TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC--------C-TTSGGGCSEEEEECCCGGGHHHHHH
T ss_pred             CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH--------H-HhHhhcCCEEEEECCCCcChhHHHH
Confidence            468899999999543   233456899999999998765433221        1 112357999999999985432211 


Q ss_pred             ---HHHhhhCCCCCC--CceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          114 ---EVCEGLGLFDLK--NRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       114 ---~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                         ++...+......  ..+.+++++||++|+|++++++++.+.+...
T Consensus       238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~  285 (355)
T 3p32_A          238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL  285 (355)
T ss_dssp             HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence               222221100000  1235699999999999999999999887663

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.51  E-value=6.2e-16  Score=111.05  Aligned_cols=115  Identities=10%  Similarity=-0.066  Sum_probs=68.5

Q ss_pred             EEEEEEEcCCCCCchhhHH------hhccCCCEEEEEEECCChhhHHHHH---HHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           37 VIFTVWDVGGQEKLRPLWR------HYFNNTDGLIYVVDSLDRERIGKAK---QEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        37 ~~~~i~D~~G~~~~~~~~~------~~~~~~~~ii~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      +.+.+|||||+........      ..+.. +++++++|.....+.....   .+......   ..+.|+++|+||+|+.
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~iv~NK~D~~  184 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDLL  184 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGGC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc---ccCCCeEEEEeccccc
Confidence            5799999999876543221      24566 8999999875433222222   11111111   1267999999999986


Q ss_pred             CCCCHhHHHhhhCC-C----C------------------CC--CceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931          108 GAMTPMEVCEGLGL-F----D------------------LK--NRKWHIQGTCALKGDGLYEGLDWLASTLKE  155 (169)
Q Consensus       108 ~~~~~~~~~~~~~~-~----~------------------~~--~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  155 (169)
                      ......++.+.+.. .    .                  ..  ....+++++||++++|++++++++.+.+..
T Consensus       185 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          185 SEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             CHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            43211111111000 0    0                  00  112358999999999999999999987754

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.50  E-value=1e-14  Score=119.78  Aligned_cols=101  Identities=15%  Similarity=0.076  Sum_probs=77.9

Q ss_pred             ccccCCCCCceeeeeceee-----------------------eeeeeeEEEEEEEEC----------------CEEEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLL-----------------------FLLLVRFNVEKVQYK----------------NVIFTVW   42 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-----------------------~~~t~~~~~~~~~~~----------------~~~~~i~   42 (169)
                      |++..++|||||++++...                       ...|+......+.+.                ++.+++|
T Consensus        24 IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~li  103 (842)
T 1n0u_A           24 VIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLI  103 (842)
T ss_dssp             EECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEE
T ss_pred             EECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEE
Confidence            4567899999999987211                       122444444444443                7899999


Q ss_pred             EcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           43 DVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        43 D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      ||||+.+|...+..+++.+|++|+|+|+++..++.....|.... .    .+.|+++++||+|+.
T Consensus       104 DTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A          104 DSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             CCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred             ECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcc
Confidence            99999999999999999999999999999887777765554433 2    368999999999985

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.47  E-value=1.3e-15  Score=111.66  Aligned_cols=149  Identities=14%  Similarity=0.135  Sum_probs=73.5

Q ss_pred             CccccCCCCCceeeeeceee-eee-------------eeeEEEEEEEE----CCEEEEEEEcCCC-------CCchhhHH
Q 030931            1 MLRVKQPYCTSCTLVKFYLL-FLL-------------LVRFNVEKVQY----KNVIFTVWDVGGQ-------EKLRPLWR   55 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~-~~~-------------t~~~~~~~~~~----~~~~~~i~D~~G~-------~~~~~~~~   55 (169)
                      +|++..|+|||||++++... ..|             |.+.....+..    ....+++|||+|.       +++..+..
T Consensus        22 ~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~  101 (301)
T 2qnr_A           22 MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIIS  101 (301)
T ss_dssp             EEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTTHHH
T ss_pred             EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHH
Confidence            46789999999999984221 222             22222222222    3578999999998       56665554


Q ss_pred             -------hhccC-------------CCEEEEEEECCChhhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH
Q 030931           56 -------HYFNN-------------TDGLIYVVDSLDRERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME  114 (169)
Q Consensus        56 -------~~~~~-------------~~~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~  114 (169)
                             .+++.             +++++++.+.+. .+++... .++..+ .    .+.|+++|+||+|+.+......
T Consensus       102 ~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l-~----~~~~iilV~~K~Dl~~~~e~~~  175 (301)
T 2qnr_A          102 YIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI-H----NKVNIVPVIAKADTLTLKERER  175 (301)
T ss_dssp             HHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-T----TTSCEEEEECCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-H----hcCCEEEEEEeCCCCCHHHHHH
Confidence                   44443             234555554432 1232222 333333 1    3579999999999864211110


Q ss_pred             HHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          115 VCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      ..+ .....+...+++++++||+++ |++++|.++.+.+.+..
T Consensus       176 ~~~-~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          176 LKK-RILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI  216 (301)
T ss_dssp             HHH-HHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred             HHH-HHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence            001 111112333567999999999 99999999999887643

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.47  E-value=1.7e-15  Score=114.95  Aligned_cols=72  Identities=21%  Similarity=0.100  Sum_probs=40.8

Q ss_pred             ccccCCCCCceeeeeceeee-------eeeeeEEEEEE--E-------------------EC---CEEEEEEEcCCCCC-
Q 030931            2 LRVKQPYCTSCTLVKFYLLF-------LLLVRFNVEKV--Q-------------------YK---NVIFTVWDVGGQEK-   49 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~-------~~t~~~~~~~~--~-------------------~~---~~~~~i~D~~G~~~-   49 (169)
                      +++.+++|||||+|++....       ..|...+....  .                   ..   .+.+++|||||+.. 
T Consensus         5 ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~   84 (397)
T 1wxq_A            5 VVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPG   84 (397)
T ss_dssp             EEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-----
T ss_pred             EECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCcccc
Confidence            56789999999999873322       12332222211  1                   11   36899999999854 


Q ss_pred             ---chhhHH---hhccCCCEEEEEEECCCh
Q 030931           50 ---LRPLWR---HYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus        50 ---~~~~~~---~~~~~~~~ii~v~d~~~~   73 (169)
                         ...+..   .+++.+|++++|+|+++.
T Consensus        85 a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           85 AHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             ----------CCCSSTTCSEEEEEEETTCC
T ss_pred             hhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence               222333   346899999999999875

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.47  E-value=9.4e-15  Score=107.21  Aligned_cols=95  Identities=18%  Similarity=0.131  Sum_probs=72.8

Q ss_pred             CCCchhhHHhhccCCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCC
Q 030931           47 QEKLRPLWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLF  122 (169)
Q Consensus        47 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~  122 (169)
                      ++++..+.+.+++++|++++|+|++++. ++..+..|+..+..    .++|+++|+||+|+.+...   .++....+   
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~---  138 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIY---  138 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHH---
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHH---
Confidence            7778888888999999999999999886 88888888876633    4799999999999864311   11121211   


Q ss_pred             CCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931          123 DLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus       123 ~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                        ...+++++++||++|.|+++++..+.
T Consensus       139 --~~~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          139 --RDAGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             --HHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             --HHCCCeEEEEECCCCCCHHHHHhhcc
Confidence              12245799999999999999998764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.47  E-value=4.4e-15  Score=104.00  Aligned_cols=107  Identities=14%  Similarity=0.121  Sum_probs=66.6

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHh
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPM  113 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~  113 (169)
                      ...+.+|||+|+....   ..+...++.+++|+|+++....  ...+...       .+.|+++|+||+|+.+.  ...+
T Consensus       108 ~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~  175 (221)
T 2wsm_A          108 DCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI-------FRVADLIVINKVALAEAVGADVE  175 (221)
T ss_dssp             TCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH-------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh-------hhcCCEEEEecccCCcchhhHHH
Confidence            4578899999952111   1111357899999998764321  1111111       14789999999998532  2334


Q ss_pred             HHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          114 EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      ++...+...   ...++++++||++|.|++++++++.+.+....
T Consensus       176 ~~~~~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          176 KMKADAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            443333110   12357999999999999999999998876544

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.46  E-value=2.4e-14  Score=106.75  Aligned_cols=108  Identities=12%  Similarity=0.060  Sum_probs=67.5

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh-
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM-  113 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-  113 (169)
                      +++.+.+|||||......   ...+.+|++++|+|.+....+..+..   ..      .+.|.++|+||+|+.+..... 
T Consensus       147 ~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~  214 (341)
T 2p67_A          147 AGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAI  214 (341)
T ss_dssp             TTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred             cCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHH
Confidence            467899999999765433   34689999999999865432111100   00      146889999999986432222 


Q ss_pred             ---HHHhhhCCCCC--CCceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931          114 ---EVCEGLGLFDL--KNRKWHIQGTCALKGDGLYEGLDWLASTLK  154 (169)
Q Consensus       114 ---~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  154 (169)
                         ++...+.....  .....+++++||++|.|++++++++.+.+.
T Consensus       215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence               22221111000  111346899999999999999999998765

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.43  E-value=1.7e-14  Score=115.34  Aligned_cols=149  Identities=13%  Similarity=0.120  Sum_probs=102.4

Q ss_pred             ccCCCCCceeeeec-------ee------------------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931            4 VKQPYCTSCTLVKF-------YL------------------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF   58 (169)
Q Consensus         4 ~~~~~~Ktsll~~f-------~~------------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   58 (169)
                      .--++|||||..++       ..                  +..-|+......+.++++++++.|||||..|.......+
T Consensus         9 aHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL   88 (638)
T 3j25_A            9 AHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSL   88 (638)
T ss_dssp             CCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHH
Confidence            34689999999864       00                  112233344456788999999999999999999999999


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCCC-----------
Q 030931           59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDL-----------  124 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~-----------  124 (169)
                      +-+|++|+|+|+...-.-.. ...++.+.+    .++|.++++||+|......   .+++.+.++....           
T Consensus        89 ~~~DgavlVVDa~~GV~~qT-~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~~  163 (638)
T 3j25_A           89 SVLDGAILLISAKDGVQAQT-RILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNV  163 (638)
T ss_dssp             TTCSEEECCEESSCTTCSHH-HHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSCGGG
T ss_pred             HHhCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeEeeccc
Confidence            99999999999976433222 222333322    2689999999999875432   2233332221100           


Q ss_pred             ---------------------------------------------CCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          125 ---------------------------------------------KNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       125 ---------------------------------------------~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                                                                   ...-.|++..||+++.|+..+++.+...+....
T Consensus       164 ~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~  241 (638)
T 3j25_A          164 CVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSST  241 (638)
T ss_dssp             CCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSG
T ss_pred             cccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccccCcc
Confidence                                                         001246888999999999999999998776654

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.40  E-value=2.1e-13  Score=101.96  Aligned_cols=109  Identities=16%  Similarity=0.100  Sum_probs=65.4

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---  111 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---  111 (169)
                      +++.+.++||+|....   .......+|.+++|+|+++......+.   ..+      -..|.++|+||+|+.+...   
T Consensus       165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~i------l~~~~ivVlNK~Dl~~~~~~~~  232 (349)
T 2www_A          165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK---RGI------IEMADLVAVTKSDGDLIVPARR  232 (349)
T ss_dssp             TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred             CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH---HHH------HhcCCEEEEeeecCCCchhHHH
Confidence            4677899999996321   344567899999999997643222111   111      2458899999999853211   


Q ss_pred             -HhHHHhhhCCCCC--CCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931          112 -PMEVCEGLGLFDL--KNRKWHIQGTCALKGDGLYEGLDWLASTLKE  155 (169)
Q Consensus       112 -~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  155 (169)
                       ..++...+.....  .....+++.+||++|+|++++++++.+.+..
T Consensus       233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence             1122222221110  0113468999999999999999999987643

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.39  E-value=1e-12  Score=98.23  Aligned_cols=71  Identities=14%  Similarity=0.069  Sum_probs=51.9

Q ss_pred             ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEECC-----------------EEEEEEEcCCCCCchh----h
Q 030931            2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYKN-----------------VIFTVWDVGGQEKLRP----L   53 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~~~----~   53 (169)
                      |++.+++|||||++++...       +.+|++.+...+.+++                 ..+++|||||+.++.+    +
T Consensus         7 IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl   86 (363)
T 1jal_A            7 IVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGL   86 (363)
T ss_dssp             EECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGG
T ss_pred             EECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchH
Confidence            5678999999999987432       2346665554555543                 6899999999987642    2


Q ss_pred             ---HHhhccCCCEEEEEEECCC
Q 030931           54 ---WRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus        54 ---~~~~~~~~~~ii~v~d~~~   72 (169)
                         ...+++.+|++++|+|+++
T Consensus        87 ~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           87 GNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             TCCHHHHHHTCSEEEEEEECSC
T ss_pred             HHHHHHHHHhcCeEEEEEecCC
Confidence               2335789999999999986

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.38  E-value=2.8e-14  Score=108.65  Aligned_cols=146  Identities=13%  Similarity=0.062  Sum_probs=66.1

Q ss_pred             CccccCCCCCceeeeeceeeee-------------eeeeEEEEEE--EE--CCEEEEEEEcCCCCCch-------hh---
Q 030931            1 MLRVKQPYCTSCTLVKFYLLFL-------------LLVRFNVEKV--QY--KNVIFTVWDVGGQEKLR-------PL---   53 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~~-------------~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~-------~~---   53 (169)
                      +|++..|+|||||++.+.....             +|.+.....+  ..  ....+.+||++|.....       .+   
T Consensus        35 ~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~  114 (418)
T 2qag_C           35 MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDY  114 (418)
T ss_dssp             EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHH
Confidence            3678999999999997633222             2333222221  11  23579999999986541       11   


Q ss_pred             ---------------HHhhccCCCEEEEEEECCCh-hhHHHHH-HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHH
Q 030931           54 ---------------WRHYFNNTDGLIYVVDSLDR-ERIGKAK-QEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVC  116 (169)
Q Consensus        54 ---------------~~~~~~~~~~ii~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~  116 (169)
                                     ...+++++++.+++|+.... .++.... .|+..+.     .+.|+++|+||+|+...   .++.
T Consensus       115 i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~---~ev~  186 (418)
T 2qag_C          115 IDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTP---EECQ  186 (418)
T ss_dssp             HHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCH---HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccH---HHHH
Confidence                           11234455554455544332 3444443 5666552     36899999999998542   2322


Q ss_pred             hh--hCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931          117 EG--LGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK  154 (169)
Q Consensus       117 ~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  154 (169)
                      ..  .....+...+++++++||+++.++.++|..+...++
T Consensus       187 ~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          187 QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             HHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred             HHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence            10  001111233566899999999999998887776443

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.35  E-value=3.8e-12  Score=103.05  Aligned_cols=69  Identities=20%  Similarity=0.152  Sum_probs=55.1

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  109 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  109 (169)
                      ++.+++.|||||-.|.......++-+|++|+|+|+...-.......| +...+    .++|.++++||+|....
T Consensus        84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~----~~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANK----YGVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH----HTCCEEEEEECSSSTTC
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHH----cCCCeEEEEccccccCc
Confidence            69999999999999999999999999999999999765443333333 33322    37899999999998653

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.33  E-value=1.9e-13  Score=107.68  Aligned_cols=68  Identities=21%  Similarity=0.229  Sum_probs=52.4

Q ss_pred             EEEEEEcCCCCC-----------chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931           38 IFTVWDVGGQEK-----------LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM  106 (169)
Q Consensus        38 ~~~i~D~~G~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  106 (169)
                      .+.+|||||...           +...+..+++.+|++++|+|+++.........++..+..    .+.|+++|+||+|+
T Consensus       155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl  230 (550)
T 2qpt_A          155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADM  230 (550)
T ss_dssp             HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGG
T ss_pred             CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCc
Confidence            689999999875           456677788999999999999875444555566655522    36899999999998


Q ss_pred             CCC
Q 030931          107 KGA  109 (169)
Q Consensus       107 ~~~  109 (169)
                      .+.
T Consensus       231 ~~~  233 (550)
T 2qpt_A          231 VET  233 (550)
T ss_dssp             SCH
T ss_pred             cCH
Confidence            653

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.28  E-value=4.3e-12  Score=102.58  Aligned_cols=110  Identities=16%  Similarity=0.120  Sum_probs=69.3

Q ss_pred             EEEEEEEcCCCCC-------------chhhHHhhc-cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030931           37 VIFTVWDVGGQEK-------------LRPLWRHYF-NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN  102 (169)
Q Consensus        37 ~~~~i~D~~G~~~-------------~~~~~~~~~-~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~n  102 (169)
                      ..+.++||||...             ...+...++ +.+|++++|+|++....-.+...++..+ .   ..+.|+++|+|
T Consensus       150 ~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L-~---~~g~pvIlVlN  225 (772)
T 3zvr_A          150 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV-D---PQGQRTIGVIT  225 (772)
T ss_dssp             CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHH-C---TTCSSEEEEEE
T ss_pred             CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHH-H---hcCCCEEEEEe
Confidence            3578999999654             122333444 5789999999997643323322334444 2   13689999999


Q ss_pred             CCCCCCCCCH-hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931          103 KQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus       103 K~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      |+|+.+.... ..+... ..........+++.+||++|.|++++++.+..
T Consensus       226 KiDlv~~~~~~~~il~~-~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          226 KLDLMDEGTDARDVLEN-KLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             CTTSSCTTCCSHHHHTT-CSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             CcccCCcchhhHHHHHH-HhhhhhccCCceEEecccccccchhHHHHHHH
Confidence            9998654221 122211 01111122346889999999999999999886

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.27  E-value=9.1e-12  Score=93.47  Aligned_cols=71  Identities=11%  Similarity=-0.009  Sum_probs=48.3

Q ss_pred             ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEE---------------------CCEEEEEEEcCCCCCch--
Q 030931            2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQY---------------------KNVIFTVWDVGGQEKLR--   51 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~---------------------~~~~~~i~D~~G~~~~~--   51 (169)
                      |.+.+++|||||++++...       +..|+..+......                     .+..+++|||||+....  
T Consensus         6 IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a~~   85 (368)
T 2dby_A            6 IVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAHK   85 (368)
T ss_dssp             EECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCCCS
T ss_pred             EECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccccccc
Confidence            4678999999999976321       12244333333222                     24679999999987642  


Q ss_pred             -----hhHHhhccCCCEEEEEEECCC
Q 030931           52 -----PLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus        52 -----~~~~~~~~~~~~ii~v~d~~~   72 (169)
                           .....+++.+|++++|+|+++
T Consensus        86 ~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           86 GEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             SSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cchHHHHHHHHHHhCCEEEEEEECCC
Confidence                 223346799999999999975

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.27  E-value=2e-11  Score=91.74  Aligned_cols=103  Identities=11%  Similarity=0.002  Sum_probs=71.3

Q ss_pred             ccccCCCCCceeeeec-------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCch-------hhHHhhccCCCEEEEE
Q 030931            2 LRVKQPYCTSCTLVKF-------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLR-------PLWRHYFNNTDGLIYV   67 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~~ii~v   67 (169)
                      |.+.|.+|||||+|++       .+.++.|...+...+.+.+.++++.||||.-...       ...-..++.||++++|
T Consensus        77 ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~v  156 (376)
T 4a9a_A           77 FVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFII  156 (376)
T ss_dssp             EECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccc
Confidence            4678999999999976       4456677778888899999999999999954321       1223456789999999


Q ss_pred             EECCChhh-HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931           68 VDSLDRER-IGKAKQEFQAIIKDPFMLNSVILVFANKQDM  106 (169)
Q Consensus        68 ~d~~~~~~-~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  106 (169)
                      +|.+++.. ++.+...+..+  .......|.+++.||.|.
T Consensus       157 vD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          157 LDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEK  194 (376)
T ss_dssp             EETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSS
T ss_pred             cccCccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhh
Confidence            99987632 23333333332  112235677777888875

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.26  E-value=5.5e-16  Score=109.00  Aligned_cols=59  Identities=17%  Similarity=0.162  Sum_probs=41.1

Q ss_pred             CCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931           94 NSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE  155 (169)
Q Consensus        94 ~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  155 (169)
                      ..|.++|+||+|+.+.  ...+++...+..   .....+++++||++|.|++++|+++.+.+..
T Consensus       164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVGADIKKMENDAKR---INPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TTCSEEEEECGGGHHHHTCCHHHHHHHHHH---HCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeccccCchhHHHHHHHHHHHHH---hCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            3577999999998542  233333332210   0123579999999999999999999987754

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.20  E-value=2.2e-12  Score=96.97  Aligned_cols=115  Identities=17%  Similarity=0.147  Sum_probs=74.2

Q ss_pred             CCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCC
Q 030931           46 GQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDL  124 (169)
Q Consensus        46 G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~  124 (169)
                      .+++|......+.+.++++++|+|++++.     ..|...+.+.  ..+.|+++|+||+|+.+.. ..+++.+.+.. ..
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~-~~  126 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMRY-SA  126 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHHH-HH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHHH-HH
Confidence            56788999999999999999999998853     2332222221  1378999999999996432 22222221110 00


Q ss_pred             CCcee---EEEEeeeccCCCHHHHHHHHHHHHHhhh--ccccccccccC
Q 030931          125 KNRKW---HIQGTCALKGDGLYEGLDWLASTLKEMR--AAGYSSVGTSS  168 (169)
Q Consensus       125 ~~~~~---~~~~~Sa~~~~gi~~~~~~l~~~~~~~~--~~~~~~~~~~s  168 (169)
                      ...++   +++++||++|.|++++++.+........  ..+.+..|+||
T Consensus       127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~~~~i~~vG~~nvGKSt  175 (368)
T 3h2y_A          127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYRGGKDVYVVGCTNVGKST  175 (368)
T ss_dssp             HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHTTSCEEEEEBTTSSHHH
T ss_pred             HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcccceEEEecCCCCChhH
Confidence            11222   6899999999999999999977654332  12455566655

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.20  E-value=9.3e-12  Score=92.58  Aligned_cols=108  Identities=12%  Similarity=0.063  Sum_probs=65.0

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---  111 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---  111 (169)
                      .+..+.++||+|...-.   ......+|.+++++|....+....+....         ...|.++++||+|+.....   
T Consensus       146 ~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivvlNK~Dl~~~~~~s~  213 (337)
T 2qm8_A          146 AGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIAVNKADDGDGERRAS  213 (337)
T ss_dssp             TTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEEEECCSTTCCHHHHH
T ss_pred             CCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEEEEchhccCchhHHH
Confidence            57889999999975422   23457899999999986432211111001         1346677889999743211   


Q ss_pred             --HhHHHhhhCCCCCC--CceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931          112 --PMEVCEGLGLFDLK--NRKWHIQGTCALKGDGLYEGLDWLASTLK  154 (169)
Q Consensus       112 --~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  154 (169)
                        .+++...+......  ....+++.+||+++.|++++++.+.+...
T Consensus       214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence              12222222211100  11235888999999999999999988765

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.15  E-value=5.5e-12  Score=94.92  Aligned_cols=116  Identities=14%  Similarity=0.113  Sum_probs=74.8

Q ss_pred             CCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCC
Q 030931           45 GGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFD  123 (169)
Q Consensus        45 ~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~  123 (169)
                      ..++.|......+++.++++++|+|+++.++  .....+...+     .+.|+++|+||+|+.+.. ..+.+.+.+.. .
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~-~  127 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRR-M  127 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHH-H
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHH-H
Confidence            3588899999999999999999999998763  1111122222     378999999999996542 22222221110 0


Q ss_pred             CCCce---eEEEEeeeccCCCHHHHHHHHHHHHHhhhc--cccccccccC
Q 030931          124 LKNRK---WHIQGTCALKGDGLYEGLDWLASTLKEMRA--AGYSSVGTSS  168 (169)
Q Consensus       124 ~~~~~---~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~~--~~~~~~~~~s  168 (169)
                      ....+   .+++.+||++|.|++++++.+.........  .+.+..|+||
T Consensus       128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~~~i~~vG~~nvGKSt  177 (369)
T 3ec1_A          128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKST  177 (369)
T ss_dssp             HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTTSCEEEECCTTSSHHH
T ss_pred             HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcccCcEEEEcCCCCchHH
Confidence            01122   268999999999999999999876644322  2455666665

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.08  E-value=4.8e-11  Score=86.64  Aligned_cols=103  Identities=17%  Similarity=0.109  Sum_probs=67.6

Q ss_pred             EEEcCCCCC-chhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhh
Q 030931           41 VWDVGGQEK-LRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGL  119 (169)
Q Consensus        41 i~D~~G~~~-~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~  119 (169)
                      |-..|||.. ........++.+|+++.|+|+.++.+...  ..+..++     .++|.++|+||+|+.+....+...+.+
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~   75 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF   75 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence            456789873 44556677899999999999988766542  1233332     478999999999996521112222222


Q ss_pred             CCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931          120 GLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE  155 (169)
Q Consensus       120 ~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  155 (169)
                           +..+++++++||+++.|+.++++.+.+.+.+
T Consensus        76 -----~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           76 -----ENQGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             -----HTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             -----HhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence                 1223468999999999999999988887764

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.88  E-value=6.2e-10  Score=84.03  Aligned_cols=73  Identities=12%  Similarity=0.085  Sum_probs=45.0

Q ss_pred             ccccCCCCCceeeeeceee-------eeeeeeEEEEEEEEC-----------------CEEEEEEEcCCCCCchh-----
Q 030931            2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEKVQYK-----------------NVIFTVWDVGGQEKLRP-----   52 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~~~-----   52 (169)
                      |++.+++|||||++++...       +.+|+..+...+...                 ...+++|||||.....+     
T Consensus        27 IVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~gl  106 (396)
T 2ohf_A           27 IVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGL  106 (396)
T ss_dssp             EECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------
T ss_pred             EECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHH
Confidence            5678999999999987433       344555555555442                 34599999999876543     


Q ss_pred             --hHHhhccCCCEEEEEEECCChh
Q 030931           53 --LWRHYFNNTDGLIYVVDSLDRE   74 (169)
Q Consensus        53 --~~~~~~~~~~~ii~v~d~~~~~   74 (169)
                        .+..+++.+|++++|+|+++.+
T Consensus       107 g~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          107 GNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             CCHHHHHHHTSSSEEEEEEC----
T ss_pred             HHHHHHHHHhcCeEEEEEecCCCc
Confidence              4567789999999999997543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.64  E-value=7.4e-10  Score=79.59  Aligned_cols=94  Identities=10%  Similarity=-0.026  Sum_probs=58.6

Q ss_pred             cCCCCCc-hhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC
Q 030931           44 VGGQEKL-RPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF  122 (169)
Q Consensus        44 ~~G~~~~-~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~  122 (169)
                      .|||... .......++.+|+++.|+|+.++.+.....  +. +     . ++|.++|+||+|+.+....+...+.+.  
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~--   72 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFK--   72 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHH--
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHH--
Confidence            4777642 345666789999999999998775443210  11 1     2 789999999999965311122222221  


Q ss_pred             CCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931          123 DLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus       123 ~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                         ..++++ .+||+++.|++++++.+...
T Consensus        73 ---~~g~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           73 ---KQGKRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             ---HTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             ---HcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence               123456 99999999999988876543

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.43  E-value=2e-07  Score=72.56  Aligned_cols=110  Identities=15%  Similarity=0.130  Sum_probs=64.1

Q ss_pred             CCEEEEEEEcCCCCCch-hhHHh---h--ccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeE-EEEEeCCCCC
Q 030931           35 KNVIFTVWDVGGQEKLR-PLWRH---Y--FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVI-LVFANKQDMK  107 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~-~~~~~---~--~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ivv~nK~Dl~  107 (169)
                      .++.+.|+||||..... ..+..   .  ...+|.+++|+|.........   ....+.+     ..|+ .+|+||+|..
T Consensus       182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~-----~~~i~gvVlNK~D~~  253 (504)
T 2j37_W          182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD-----KVDVASVIVTKLDGH  253 (504)
T ss_dssp             TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH-----HHCCCCEEEECTTSC
T ss_pred             CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh-----hcCceEEEEeCCccc
Confidence            56789999999986432 11111   1  227899999999976433211   1222211     2565 8999999986


Q ss_pred             CCCC-HhHHHhhhCCCC--------CCC-c-eeEEEEeeeccCCC-HHHHHHHHHHH
Q 030931          108 GAMT-PMEVCEGLGLFD--------LKN-R-KWHIQGTCALKGDG-LYEGLDWLAST  152 (169)
Q Consensus       108 ~~~~-~~~~~~~~~~~~--------~~~-~-~~~~~~~Sa~~~~g-i~~~~~~l~~~  152 (169)
                      .... ...+...++...        ... . ..+...+|+..|.| +.++++++.+.
T Consensus       254 ~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          254 AKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             cchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            4322 112223332210        000 0 01235689999999 99999988765

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.24  E-value=5.9e-07  Score=67.89  Aligned_cols=71  Identities=18%  Similarity=0.159  Sum_probs=49.9

Q ss_pred             ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEECC-----------------EEEEEEEcCCCCC-------
Q 030931            2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYKN-----------------VIFTVWDVGGQEK-------   49 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~-------   49 (169)
                      |++.+|+|||||++.+...        +..|+..+...+...+                 ..+.+||+||...       
T Consensus        25 iVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~  104 (392)
T 1ni3_A           25 IVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVG  104 (392)
T ss_dssp             EEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSS
T ss_pred             EECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHH
Confidence            5678999999999987442        1224444444555443                 5789999999432       


Q ss_pred             chhhHHhhccCCCEEEEEEECCC
Q 030931           50 LRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus        50 ~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +.......++.+|++++|+|+.+
T Consensus       105 L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A          105 LGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             SCHHHHHHHTTCSEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc
Confidence            34455667789999999999864

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.18  E-value=4.6e-07  Score=67.64  Aligned_cols=84  Identities=18%  Similarity=0.110  Sum_probs=53.0

Q ss_pred             hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC---HhHHHhhhCCCCCCCceeEEEE
Q 030931           57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT---PMEVCEGLGLFDLKNRKWHIQG  133 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~  133 (169)
                      ...++|.+++|.......+...+..++...-.    .++|+++|+||+|+.+...   .+++...+     ...+++++.
T Consensus       127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y-----~~~G~~v~~  197 (358)
T 2rcn_A          127 IAANIDQIVIVSAILPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIY-----RNIGYRVLM  197 (358)
T ss_dssp             EEECCCEEEEEEESTTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHH-----HTTTCCEEE
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHH-----HhCCCcEEE
Confidence            46789999988765433334444444433211    3678899999999965321   11122222     233456899


Q ss_pred             eeeccCCCHHHHHHHH
Q 030931          134 TCALKGDGLYEGLDWL  149 (169)
Q Consensus       134 ~Sa~~~~gi~~~~~~l  149 (169)
                      +||.++.|++++...+
T Consensus       198 ~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          198 VSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             CBTTTTBTHHHHHHHH
T ss_pred             EecCCCcCHHHHHHhc
Confidence            9999999999887653

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.13  E-value=7.1e-07  Score=65.37  Aligned_cols=87  Identities=14%  Similarity=0.106  Sum_probs=57.2

Q ss_pred             hHHhhccCCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC----HhHHHhhhCCCCCCCc
Q 030931           53 LWRHYFNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT----PMEVCEGLGLFDLKNR  127 (169)
Q Consensus        53 ~~~~~~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~  127 (169)
                      +....+.++|.+++|+|+.++. +...+..++...-    ..++|+++|+||+|+.+...    .+++.+.+     ...
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y-----~~~  149 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDY-----RNI  149 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH-----HHH
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHH-----HhC
Confidence            3445688999999999997543 3444444443331    14789999999999975422    12333332     122


Q ss_pred             eeEEEEeeeccCCCHHHHHHH
Q 030931          128 KWHIQGTCALKGDGLYEGLDW  148 (169)
Q Consensus       128 ~~~~~~~Sa~~~~gi~~~~~~  148 (169)
                      +++.+.+||.++.|+++++..
T Consensus       150 g~~v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          150 GYDVYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             TCCEEECCHHHHTTCTTTGGG
T ss_pred             CCeEEEEecCCCCCHHHHHhh
Confidence            346899999999998876654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.85  E-value=5.1e-06  Score=63.38  Aligned_cols=128  Identities=10%  Similarity=0.037  Sum_probs=59.6

Q ss_pred             ccccCCCCCceeeeeceee-----e----eeeeeEEEEE--EEECC--EEEEEEEcCCCCCc--------------hhhH
Q 030931            2 LRVKQPYCTSCTLVKFYLL-----F----LLLVRFNVEK--VQYKN--VIFTVWDVGGQEKL--------------RPLW   54 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-----~----~~t~~~~~~~--~~~~~--~~~~i~D~~G~~~~--------------~~~~   54 (169)
                      |++..|+|||||++.+...     .    .|........  ++...  ..+.++|++|-...              ...+
T Consensus        47 LvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~  126 (427)
T 2qag_B           47 CVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQF  126 (427)
T ss_dssp             EECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHH
Confidence            6788999999999964211     1    1111111111  12222  36899999985432              1111


Q ss_pred             Hhhc-------------cCC--C-EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhh
Q 030931           55 RHYF-------------NNT--D-GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEG  118 (169)
Q Consensus        55 ~~~~-------------~~~--~-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~  118 (169)
                      ..++             ..+  | +++|+.|.....+-.++ ..+. .+.    .+.|+++|.||+|.........+...
T Consensus       127 ~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-eilk-~L~----~~~~vI~Vi~KtD~Lt~~E~~~l~~~  200 (427)
T 2qag_B          127 EAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VTMK-KLD----SKVNIIPIIAKADAISKSELTKFKIK  200 (427)
T ss_dssp             HHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HHHH-HTC----SCSEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HHHH-HHh----hCCCEEEEEcchhccchHHHHHHHHH
Confidence            1111             112  3 35566666443322221 2222 222    47899999999997543222222221


Q ss_pred             hCCCCCCCceeEEEEeee
Q 030931          119 LGLFDLKNRKWHIQGTCA  136 (169)
Q Consensus       119 ~~~~~~~~~~~~~~~~Sa  136 (169)
                      +.. .+...+++++.+|.
T Consensus       201 I~~-~L~~~gi~I~~is~  217 (427)
T 2qag_B          201 ITS-ELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHH-HHBTTBCCCCCCC-
T ss_pred             HHH-HHHHcCCcEEecCC
Confidence            110 12344556666664

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.83  E-value=6.3e-07  Score=67.35  Aligned_cols=101  Identities=8%  Similarity=0.032  Sum_probs=56.9

Q ss_pred             ccccCCCCCceeeeeceee-----eeeeee------EEEEEEEECCEEEEEEEcCCCCCchhh--------HHhhc--cC
Q 030931            2 LRVKQPYCTSCTLVKFYLL-----FLLLVR------FNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYF--NN   60 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-----~~~t~~------~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~--~~   60 (169)
                      +.+.+++|||||+|++...     ...+.+      .....+..+ ..+.++||||......+        ...++  +.
T Consensus       167 ~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~  245 (369)
T 3ec1_A          167 VVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKIITPKRE  245 (369)
T ss_dssp             EECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSC
T ss_pred             EEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccc
Confidence            5679999999999977432     111111      112223332 13799999996532211        12222  67


Q ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           61 TDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        61 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      .++++++++.....-+..... + +++.   ..+.|+++++||.|...
T Consensus       246 i~~~~~~l~~~~~~~~g~l~~-l-~~l~---~~~~~~~~v~~k~d~~~  288 (369)
T 3ec1_A          246 IHPRVYQLNEGQTLFFGGLAR-L-DYIK---GGRRSFVCYMANELTVH  288 (369)
T ss_dssp             CCCEEEEECTTEEEEETTTEE-E-EEEE---SSSEEEEEEECTTSCEE
T ss_pred             cCceEEEEcCCceEEECCEEE-E-EEcc---CCCceEEEEecCCcccc
Confidence            899999998832211111100 0 1112   23689999999999753

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.70  E-value=1.9e-05  Score=60.13  Aligned_cols=147  Identities=14%  Similarity=0.037  Sum_probs=77.0

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee------EEE----EEEEECCE-EEEEEEcCCCCCc----hhh-HHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR------FNV----EKVQYKNV-IFTVWDVGGQEKL----RPL-WRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~------~~~----~~~~~~~~-~~~i~D~~G~~~~----~~~-~~~~~~~~~~ii   65 (169)
                      |++..|+|||||++.+.....|+.|      ...    ...+.... .+.+||++|...-    ... ....+...+..+
T Consensus        74 lvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~  153 (413)
T 1tq4_A           74 VTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFI  153 (413)
T ss_dssp             EEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEE
T ss_pred             EECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeE
Confidence            5679999999999965322211111      110    11122222 4789999984321    111 111234456555


Q ss_pred             EEEECC--ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC---------CCCCHhHHHhhhCCCC------CCCce
Q 030931           66 YVVDSL--DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK---------GAMTPMEVCEGLGLFD------LKNRK  128 (169)
Q Consensus        66 ~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~---------~~~~~~~~~~~~~~~~------~~~~~  128 (169)
                      + ++..  .....    .+...+..    .+.|+++|.||.|+.         +.....++.+.+....      .....
T Consensus       154 ~-lS~G~~~kqrv----~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~  224 (413)
T 1tq4_A          154 I-ISATRFKKNDI----DIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAE  224 (413)
T ss_dssp             E-EESSCCCHHHH----HHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             E-eCCCCccHHHH----HHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            5 7765  22211    12222222    257999999999863         1223333322221100      00011


Q ss_pred             eEEEEeee--ccCCCHHHHHHHHHHHHHhhh
Q 030931          129 WHIQGTCA--LKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       129 ~~~~~~Sa--~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      ...+.+|+  ..+.|++++.+.+.+.+.+..
T Consensus       225 ~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          225 PPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             CCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             CcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence            24788999  666779999999988776654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.66  E-value=1.7e-06  Score=64.95  Aligned_cols=101  Identities=5%  Similarity=0.022  Sum_probs=55.5

Q ss_pred             ccccCCCCCceeeeeceeee------eeeee----EE--EEEEEECCEEEEEEEcCCCCCchhh--------HHhh--cc
Q 030931            2 LRVKQPYCTSCTLVKFYLLF------LLLVR----FN--VEKVQYKNVIFTVWDVGGQEKLRPL--------WRHY--FN   59 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~------~~t~~----~~--~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~--~~   59 (169)
                      +.+.+++|||||+|++....      .++.+    .+  ...+..+. .+.++||||......+        ...+  .+
T Consensus       165 ~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~  243 (368)
T 3h2y_A          165 VVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE-ESSLYDTPGIINHHQMAHYVGKQSLKLITPTK  243 (368)
T ss_dssp             EEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS-SCEEEECCCBCCTTSGGGGSCHHHHHHHSCSS
T ss_pred             EecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC-CeEEEeCCCcCcHHHHHHHhhHHHHHHhcccc
Confidence            56799999999999863321      11111    11  12222221 2899999996432211        1111  35


Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           60 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        60 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      ..+..++++|.....-..... .+ +.+.   ..+.|+++++||+|...
T Consensus       244 ~i~~~~~~l~~~~~~~~g~l~-~~-d~l~---~~~~~~~~v~nk~d~~~  287 (368)
T 3h2y_A          244 EIKPMVFQLNEEQTLFFSGLA-RF-DYVS---GGRRAFTCHFSNRLTIH  287 (368)
T ss_dssp             CCCCEEEEECTTEEEEETTTE-EE-EEEE---SSSEEEEEEECTTSCEE
T ss_pred             ccCceEEEEcCCCEEEEcceE-EE-EEec---CCCceEEEEecCccccc
Confidence            788899999873221111110 00 1112   13689999999999754

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.48  E-value=2e-05  Score=56.66  Aligned_cols=102  Identities=13%  Similarity=0.082  Sum_probs=54.0

Q ss_pred             CccccCCCCCceeeeeceeeeeeeeeEE------------EEEEEE----C--CEEEEEEEcCCCCCc-------hhh--
Q 030931            1 MLRVKQPYCTSCTLVKFYLLFLLLVRFN------------VEKVQY----K--NVIFTVWDVGGQEKL-------RPL--   53 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~~~t~~~~------------~~~~~~----~--~~~~~i~D~~G~~~~-------~~~--   53 (169)
                      +|++..|+|||||++.+.....|+.|--            ...+.+    .  ...+.++|++|-...       ...  
T Consensus         6 ~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i~~   85 (270)
T 3sop_A            6 MVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEK   85 (270)
T ss_dssp             EEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHHHH
T ss_pred             EEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHHHH
Confidence            4678899999999997633333332200            011111    1  236899999873221       011  


Q ss_pred             -----HH--------------hhccCCCEEEEEEECCC-hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           54 -----WR--------------HYFNNTDGLIYVVDSLD-RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        54 -----~~--------------~~~~~~~~ii~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                           ..              ..+..+++.++++|... .-+-.+ ...+..+.+     ..++++|.+|+|...
T Consensus        86 ~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~-----~~~vI~Vi~K~D~lt  154 (270)
T 3sop_A           86 YINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK-----VVNIIPVIAKADTMT  154 (270)
T ss_dssp             HHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT-----TSEEEEEETTGGGSC
T ss_pred             HHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh-----cCcEEEEEeccccCC
Confidence                 00              01234688899998642 212112 233444422     279999999999754

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.98  E-value=1.9e-05  Score=56.59  Aligned_cols=48  Identities=8%  Similarity=-0.158  Sum_probs=28.1

Q ss_pred             CccccCCCCCceeeeeceeee----eeeeeEEE--EEEEECCEEEEEEEcCCCCC
Q 030931            1 MLRVKQPYCTSCTLVKFYLLF----LLLVRFNV--EKVQYKNVIFTVWDVGGQEK   49 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~----~~t~~~~~--~~~~~~~~~~~i~D~~G~~~   49 (169)
                      ++.+.+|+|||||+|++....    .++.|.+.  ..+.. +..+.+|||||...
T Consensus       103 ~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~  156 (262)
T 3cnl_A          103 LIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGILY  156 (262)
T ss_dssp             EEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEECC
T ss_pred             EEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCccc
Confidence            356789999999999874322    23333221  11222 34689999999764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.94  E-value=0.00065  Score=52.05  Aligned_cols=65  Identities=22%  Similarity=0.180  Sum_probs=40.2

Q ss_pred             CCEEEEEEEcCCCCCchhh-HH---h--hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCC-e-EEEEEeCCCC
Q 030931           35 KNVIFTVWDVGGQEKLRPL-WR---H--YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS-V-ILVFANKQDM  106 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~-~~---~--~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p-iivv~nK~Dl  106 (169)
                      ..+.+.|+||||....... ..   .  .+..++.+++|+|......   .......+ +    ... | ..+|.||+|.
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~-~----~~~~~i~gvVlnK~D~  250 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF-K----EAVGEIGSIIVTKLDG  250 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence            4677999999997653221 11   1  1236899999999865432   22222333 1    124 4 8999999997


Q ss_pred             C
Q 030931          107 K  107 (169)
Q Consensus       107 ~  107 (169)
                      .
T Consensus       251 ~  251 (432)
T 2v3c_C          251 S  251 (432)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.89  E-value=0.00016  Score=57.84  Aligned_cols=68  Identities=18%  Similarity=0.130  Sum_probs=35.5

Q ss_pred             EEEEEEcCCCCC-------------chhhHHhhccCC-CEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030931           38 IFTVWDVGGQEK-------------LRPLWRHYFNNT-DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK  103 (169)
Q Consensus        38 ~~~i~D~~G~~~-------------~~~~~~~~~~~~-~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK  103 (169)
                      .+.+.|.||...             ...+...+++.. ..++++.+.+....-.....+...+    ...+.+.++|.||
T Consensus       148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v----~~~g~rtI~VlTK  223 (608)
T 3szr_A          148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV----DPEGDRTIGILTK  223 (608)
T ss_dssp             CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH----CSSCCSEEEEEEC
T ss_pred             ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH----hhcCCceEEEecc
Confidence            478899996322             122334445544 4444444432211111233444444    2246789999999


Q ss_pred             CCCCCC
Q 030931          104 QDMKGA  109 (169)
Q Consensus       104 ~Dl~~~  109 (169)
                      .|+.+.
T Consensus       224 ~Dlv~~  229 (608)
T 3szr_A          224 PDLVDK  229 (608)
T ss_dssp             GGGSSS
T ss_pred             hhhcCc
Confidence            998654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.84  E-value=9.6e-05  Score=53.45  Aligned_cols=46  Identities=9%  Similarity=-0.058  Sum_probs=27.4

Q ss_pred             ccccCCCCCceeeeeceeeeeeee----eEE--EEEEEECCEEEEEEEcCCCC
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLV----RFN--VEKVQYKNVIFTVWDVGGQE   48 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~----~~~--~~~~~~~~~~~~i~D~~G~~   48 (169)
                      +.+.+++|||||+|++........    +.+  ...+.. +..+.+|||||..
T Consensus       125 ~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~  176 (282)
T 1puj_A          125 IIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL  176 (282)
T ss_dssp             EEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred             EEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcC
Confidence            567899999999998743321111    111  111222 2368999999964

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.63  E-value=0.0015  Score=49.94  Aligned_cols=65  Identities=17%  Similarity=0.201  Sum_probs=39.1

Q ss_pred             CEEEEEEEcCCCCC--chh-h---HHh--hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           36 NVIFTVWDVGGQEK--LRP-L---WRH--YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        36 ~~~~~i~D~~G~~~--~~~-~---~~~--~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      .+.+.|.||||...  ... .   ...  .....+.+++|+|.............+.+.       -.+..++.||.|..
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD~~  251 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMDGT  251 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGGGC
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccccc
Confidence            57788999999644  111 1   111  112568999999997543332322333322       23578999999975

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.28  E-value=6.8e-05  Score=58.02  Aligned_cols=84  Identities=15%  Similarity=0.128  Sum_probs=52.0

Q ss_pred             ccccCCCCCceeeeeceee----eeeeeeEEEEEEEE---C-CEEEEEEEcCCCCC--chhhH--------HhhccCCCE
Q 030931            2 LRVKQPYCTSCTLVKFYLL----FLLLVRFNVEKVQY---K-NVIFTVWDVGGQEK--LRPLW--------RHYFNNTDG   63 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~----~~~t~~~~~~~~~~---~-~~~~~i~D~~G~~~--~~~~~--------~~~~~~~~~   63 (169)
                      |.+-+||||||+.+++...    ..+|.+++...+..   + .....+||..|.+.  .+..+        ..++..+.+
T Consensus        44 lvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G  123 (469)
T 1bif_A           44 MVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGG  123 (469)
T ss_dssp             EECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4568999999999987433    23444433211111   1 24567899988733  33333        556667889


Q ss_pred             EEEEEECCChhhHHHHHHHHHHH
Q 030931           64 LIYVVDSLDRERIGKAKQEFQAI   86 (169)
Q Consensus        64 ii~v~d~~~~~~~~~~~~~~~~~   86 (169)
                      .++|+|.++. +.+....|+..+
T Consensus       124 ~~vV~D~tn~-~~~~R~~~~~~~  145 (469)
T 1bif_A          124 HVAVFDATNT-TRERRAMIFNFG  145 (469)
T ss_dssp             SEEEEESCCC-SHHHHHHHHHHH
T ss_pred             CEEEEeCCCC-CHHHHHHHHHHH
Confidence            9999999886 454445555444

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=95.66  E-value=0.0028  Score=50.41  Aligned_cols=48  Identities=13%  Similarity=-0.124  Sum_probs=31.1

Q ss_pred             ccccCCCCCceeeeeceeee----------eeeeeEEEEEEE---ECCEEEEEEEcCCCCC
Q 030931            2 LRVKQPYCTSCTLVKFYLLF----------LLLVRFNVEKVQ---YKNVIFTVWDVGGQEK   49 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~----------~~t~~~~~~~~~---~~~~~~~i~D~~G~~~   49 (169)
                      +.+.+++|||||+|++....          ..|.++......   ..+..+.++||||...
T Consensus        43 ivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           43 IVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             EEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             EECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            67899999999999763221          122333222221   2567899999999654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.04  E-value=0.068  Score=41.02  Aligned_cols=65  Identities=15%  Similarity=0.115  Sum_probs=39.3

Q ss_pred             CEEEEEEEcCCCCCchhhHH------hhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPLWR------HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~------~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      ++.+.|+||+|.........      .....++.+++|+|+..........   ..+.+.    -.+..+|.||.|..
T Consensus       182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~----~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA----TPIGSIIVTKLDGS  252 (443)
T ss_dssp             TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS----CTTEEEEEECCSSC
T ss_pred             CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh----CCCeEEEEECCCCc
Confidence            47899999999654322111      1123579999999986543322222   233211    23567899999975

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.01  E-value=0.25  Score=34.13  Aligned_cols=82  Identities=17%  Similarity=0.126  Sum_probs=57.1

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHH
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEV  115 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~  115 (169)
                      .+.+.|+|+|+...  ......+..+|.++++... +..+...+...++.+.+ ...+...+-+|.|+.+.......+++
T Consensus       118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~-~~~~~~~~~~~~~~l~~-~~~~~~~~~~v~N~~~~~~~~~~~~~  193 (245)
T 3ea0_A          118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTP-SLQSLRRAGQLLKLCKE-FEKPISRIEIILNRADTNSRITSDEI  193 (245)
T ss_dssp             HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECS-SHHHHHHHHHHHHHHHT-CSSCCSCEEEEEESTTSCTTSCHHHH
T ss_pred             hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHH-hCCCccceEEEEecCCCCCCCCHHHH
Confidence            46789999998653  2445567889999999986 45666666666666533 22234568899999997655566677


Q ss_pred             HhhhCC
Q 030931          116 CEGLGL  121 (169)
Q Consensus       116 ~~~~~~  121 (169)
                      .+.++.
T Consensus       194 ~~~~~~  199 (245)
T 3ea0_A          194 EKVIGR  199 (245)
T ss_dssp             HHHHTS
T ss_pred             HHHhCC
Confidence            666654

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=94.83  E-value=0.11  Score=34.94  Aligned_cols=69  Identities=10%  Similarity=0.009  Sum_probs=47.7

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCCC
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP-FMLNSVILVFANKQDMK  107 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~  107 (169)
                      ..+.+.|+|+|+..  .......+..+|.++++...+.. + ......++.+.+.. ..++.++.+|.|+.|..
T Consensus        74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~  143 (206)
T 4dzz_A           74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM  143 (206)
T ss_dssp             TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred             CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence            35789999999876  34455667789999999987544 3 55555555543321 13467889999999954

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.22  E-value=0.018  Score=38.39  Aligned_cols=103  Identities=5%  Similarity=-0.065  Sum_probs=41.8

Q ss_pred             ccccCCCCCceeeeeceeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhh----ccCCCEEEEEEEC--CChhh
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHY----FNNTDGLIYVVDS--LDRER   75 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~~~~~ii~v~d~--~~~~~   75 (169)
                      +.+..|+|||||++++..... ..+.....+......+. +|.+|.+.++-....+    ........++.+.  ..+..
T Consensus        11 i~G~sGsGKTTl~~~l~~~l~-~~g~~v~~i~~~~~~~~-id~~g~Ds~~~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~   88 (174)
T 1np6_A           11 FAAWSGTGKTTLLKKLIPALC-ARGIRPGLIKHTHHDMD-VDKPGKDSYELRKAGAAQTIVASQQRWALMTETPDEEELD   88 (174)
T ss_dssp             EECCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCC-------------CHHHHTCSEEEEECSSEEEEEEECSSSCCCC
T ss_pred             EEeCCCCCHHHHHHHHHHhcc-ccCCceeEEeeCCCccc-cCCCCCceEEEEeCCcceeecccchhheeeeeccCCchhh
Confidence            345789999999998744321 22323333444333222 3556655332111111    1111222333331  12234


Q ss_pred             HHHHHHHHHHH------hcCCCCCCCeEEEEEeCCCC
Q 030931           76 IGKAKQEFQAI------IKDPFMLNSVILVFANKQDM  106 (169)
Q Consensus        76 ~~~~~~~~~~~------~~~~~~~~~piivv~nK~Dl  106 (169)
                      +..+...+...      ++.......|.+++.+|.+-
T Consensus        89 L~~ll~r~~~~~~D~ilIEg~k~~~~pki~v~~~~~~  125 (174)
T 1np6_A           89 LQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAG  125 (174)
T ss_dssp             HHHHHHHSCGGGCSEEEEESCSSCCSEEEEEECTTSS
T ss_pred             HHHHHHhcCCCcchHHHHHHHhhcCCCEEEEEecccC
Confidence            44443222110      11123346899999999864

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=94.04  E-value=0.021  Score=42.11  Aligned_cols=64  Identities=13%  Similarity=0.137  Sum_probs=35.1

Q ss_pred             CEEEEEEEcCCCCCchhhHHh------hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPLWRH------YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM  106 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~------~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  106 (169)
                      .+.+.+.|++|..........      ..-..|-.+++.|.....   +.......+.+.    --.-.++.||.|-
T Consensus       211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~----~~it~iilTKlD~  280 (328)
T 3e70_C          211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA----VKIDGIILTKLDA  280 (328)
T ss_dssp             TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH----SCCCEEEEECGGG
T ss_pred             cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh----cCCCEEEEeCcCC
Confidence            345678999997543221111      112478899999975543   222233333211    1234788899996

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=93.24  E-value=0.66  Score=32.57  Aligned_cols=66  Identities=11%  Similarity=-0.037  Sum_probs=45.5

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD  105 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~D  105 (169)
                      +.+.+.|+|+|+..  .......+..+|.+|++...+ ..+...+...++.+.+..  .+.++.+|.|+.+
T Consensus       143 ~~yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~~vv~N~~~  208 (267)
T 3k9g_A          143 YKYDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLN--LFLPIFLIITRFK  208 (267)
T ss_dssp             TTCSEEEEEECSSC--SHHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTT--CCCCEEEEEEEEC
T ss_pred             cCCCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHh--ccCCEEEEEeccc
Confidence            35778999999865  334455667799999999874 455565555555543321  3567889999994

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=92.29  E-value=0.42  Score=32.48  Aligned_cols=68  Identities=12%  Similarity=-0.013  Sum_probs=46.6

Q ss_pred             CCEEEEEEEcCCC-CCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           35 KNVIFTVWDVGGQ-EKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        35 ~~~~~~i~D~~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      +.+.+.+.|+|+. ...  .....+..+|.+|++... +..+.......++.+.+..   +.++.++.|+.|...
T Consensus        66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A           66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTP-DALALDALMLTIETLQKLG---NNRFRILLTIIPPYP  134 (209)
T ss_dssp             GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred             hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence            3577899999987 432  344567789999999986 4455555555555543311   466889999998653

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=91.71  E-value=1.6  Score=29.78  Aligned_cols=79  Identities=8%  Similarity=-0.005  Sum_probs=51.4

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC-CCHhH
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA-MTPME  114 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~-~~~~~  114 (169)
                      .+.+.|+|+|+...  ......+..+|.+|+|... +..+...+...++.+.+.   ...+.-+|.|+.+.... ...++
T Consensus       111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~-~~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~~~~~~  184 (237)
T 1g3q_A          111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSDRDIPPEA  184 (237)
T ss_dssp             GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCTTCCCHHH
T ss_pred             cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecC-CcccHHHHHHHHHHHHhC---CCceEEEEEecCCcccchhHHHH
Confidence            46789999988643  3455667889999999976 445566665555554332   23567789999986433 23455


Q ss_pred             HHhhhC
Q 030931          115 VCEGLG  120 (169)
Q Consensus       115 ~~~~~~  120 (169)
                      +.+.++
T Consensus       185 ~~~~~~  190 (237)
T 1g3q_A          185 AEDVME  190 (237)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            555554

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=91.69  E-value=0.85  Score=32.01  Aligned_cols=67  Identities=12%  Similarity=0.051  Sum_probs=42.4

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCC
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQDM  106 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl  106 (169)
                      +.+.+.|+|+|+...........+..+|.+|+|...+ ..+...+...++.+.+    .+.+++ +|.|+.|.
T Consensus       127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~  194 (262)
T 2ph1_A          127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIVEKAINMAEE----TNTSVLGLVENMSYF  194 (262)
T ss_dssp             CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHHHHHHHHHHT----TTCCEEEEEETTCCE
T ss_pred             cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHHHHHHHHHHh----CCCCEEEEEECCCcc
Confidence            4577899999986543222222233689999998764 3445555555555432    245666 99999873

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=90.74  E-value=0.85  Score=32.95  Aligned_cols=65  Identities=15%  Similarity=0.100  Sum_probs=40.3

Q ss_pred             CCEEEEEEEcCCCCC--chh-hHH-----hhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCC
Q 030931           35 KNVIFTVWDVGGQEK--LRP-LWR-----HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQD  105 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~--~~~-~~~-----~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~D  105 (169)
                      ..+.+.|.||||...  ... +..     .....++.+++|+|......   .......+.+     ..| ..+|.||.|
T Consensus       179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~D  250 (297)
T 1j8m_F          179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKMD  250 (297)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred             CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCCC
Confidence            467899999999876  321 111     12447899999999864321   1222233321     244 778999999


Q ss_pred             CC
Q 030931          106 MK  107 (169)
Q Consensus       106 l~  107 (169)
                      ..
T Consensus       251 ~~  252 (297)
T 1j8m_F          251 GT  252 (297)
T ss_dssp             GC
T ss_pred             CC
Confidence            64

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=90.08  E-value=0.81  Score=31.80  Aligned_cols=82  Identities=10%  Similarity=-0.009  Sum_probs=52.9

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCC-----CCCCCeEEEEEeCCCCCC--
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP-----FMLNSVILVFANKQDMKG--  108 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~piivv~nK~Dl~~--  108 (169)
                      .+.+.|+|+|+...  ......+..+|.+|+|.+. +..+.......+..+....     ..+...+-+|.|+.+...  
T Consensus       113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~  189 (260)
T 3q9l_A          113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNP-EVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVS  189 (260)
T ss_dssp             TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECS-SHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHH
T ss_pred             CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecC-ChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCccccc
Confidence            68899999998543  3556677889999999986 4556666666665553211     012357889999988421  


Q ss_pred             ---CCCHhHHHhhhC
Q 030931          109 ---AMTPMEVCEGLG  120 (169)
Q Consensus       109 ---~~~~~~~~~~~~  120 (169)
                         ....+++.+.++
T Consensus       190 ~~~~~~~~~~~~~~~  204 (260)
T 3q9l_A          190 RGDMLSMEDVLEILR  204 (260)
T ss_dssp             TTSSCCHHHHHHHHC
T ss_pred             cccccCHHHHHHHhC
Confidence               122355555554

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=90.06  E-value=0.039  Score=38.66  Aligned_cols=25  Identities=8%  Similarity=-0.150  Sum_probs=19.5

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|||||||++-+..-..|+.|
T Consensus        36 i~G~nGsGKSTLl~~l~Gl~~p~~G   60 (237)
T 2cbz_A           36 VVGQVGCGKSSLLSALLAEMDKVEG   60 (237)
T ss_dssp             EECSTTSSHHHHHHHHTTCSEEEEE
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCc
Confidence            5678999999999977665666655

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=89.58  E-value=0.033  Score=38.93  Aligned_cols=25  Identities=12%  Similarity=-0.274  Sum_probs=20.2

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|||||||++-+..-..|+.|
T Consensus        36 iiG~nGsGKSTLl~~l~Gl~~p~~G   60 (235)
T 3tif_A           36 IMGPSGSGKSTMLNIIGCLDKPTEG   60 (235)
T ss_dssp             EECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCcHHHHHHHHhcCCCCCce
Confidence            5678999999999977666666666

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=89.44  E-value=0.78  Score=32.08  Aligned_cols=69  Identities=9%  Similarity=0.071  Sum_probs=43.4

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHH---HHHHHhcCCCCCCCeEE-EEEeCCCCC
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ---EFQAIIKDPFMLNSVIL-VFANKQDMK  107 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~pii-vv~nK~Dl~  107 (169)
                      ..+.+.|+|+|+....  .....+..+|.+|+++..+. .++..+..   .+..+.+. ..++.+++ +|.|+.|..
T Consensus       110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~-~~~~~~~~gvv~N~~~~~  182 (257)
T 1wcv_1          110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAG-LNPRLRLLGILVTMYDGR  182 (257)
T ss_dssp             TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHH-TCTTCEEEEEEEESBCTT
T ss_pred             cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHH-hCCCceEEEEEEEeECCC
Confidence            4577999999987532  23445677999999998743 44444433   33333211 12356764 899999864

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=88.96  E-value=0.038  Score=38.30  Aligned_cols=25  Identities=16%  Similarity=-0.177  Sum_probs=19.8

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        35 iiG~nGsGKSTLl~~l~Gl~~p~~G   59 (224)
T 2pcj_A           35 IIGASGSGKSTLLYILGLLDAPTEG   59 (224)
T ss_dssp             EEECTTSCHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCce
Confidence            5678999999999977666666655

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=88.77  E-value=0.94  Score=31.13  Aligned_cols=66  Identities=18%  Similarity=0.062  Sum_probs=43.6

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDM  106 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  106 (169)
                      ..+.+.|+|+|+....  .....+..+|.++++.+. +..++..+....+.. +..  .-..+.++.|+.+.
T Consensus       130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~-~~~--~~~~~~~v~N~~~~  195 (254)
T 3kjh_A          130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEP-NLNSIKTGLNIEKLA-GDL--GIKKVRYVINKVRN  195 (254)
T ss_dssp             TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECS-SHHHHHHHHHHHHHH-HHH--TCSCEEEEEEEECC
T ss_pred             CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCC-CHHHHHHHHHHHHHH-HHc--CCccEEEEEeCCCC
Confidence            4678999999986533  344566889999999987 445555554444322 211  12467899999983

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=88.55  E-value=0.041  Score=38.63  Aligned_cols=25  Identities=12%  Similarity=-0.289  Sum_probs=19.7

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        29 liG~nGsGKSTLl~~l~Gl~~p~~G   53 (240)
T 2onk_A           29 LLGPTGAGKSVFLELIAGIVKPDRG   53 (240)
T ss_dssp             EECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCce
Confidence            5778999999999977655556655

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=88.54  E-value=0.049  Score=35.94  Aligned_cols=16  Identities=19%  Similarity=-0.145  Sum_probs=13.7

Q ss_pred             ccccCCCCCceeeeec
Q 030931            2 LRVKQPYCTSCTLVKF   17 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f   17 (169)
                      |++..|||||||++.+
T Consensus        14 l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A           14 LIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             EECCTTSCHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHH
Confidence            5678999999999954

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=88.54  E-value=0.043  Score=37.84  Aligned_cols=25  Identities=8%  Similarity=-0.077  Sum_probs=19.8

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        40 iiG~NGsGKSTLlk~l~Gl~~p~~G   64 (214)
T 1sgw_A           40 FHGPNGIGKTTLLKTISTYLKPLKG   64 (214)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCe
Confidence            5678999999999987666666655

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=88.29  E-value=0.049  Score=38.49  Aligned_cols=24  Identities=13%  Similarity=-0.187  Sum_probs=19.2

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+ |
T Consensus        31 liG~NGsGKSTLlk~l~Gl~~p~-G   54 (249)
T 2qi9_C           31 LVGPNGAGKSTLLARMAGMTSGK-G   54 (249)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCE-E
T ss_pred             EECCCCCcHHHHHHHHhCCCCCC-e
Confidence            56789999999999776666666 6

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=88.19  E-value=0.048  Score=38.65  Aligned_cols=25  Identities=4%  Similarity=-0.269  Sum_probs=18.7

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        38 liG~nGsGKSTLlk~l~Gl~~p~~G   62 (257)
T 1g6h_A           38 IIGPNGSGKSTLINVITGFLKADEG   62 (257)
T ss_dssp             EECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCc
Confidence            5678999999999976555555544

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=88.18  E-value=0.047  Score=37.97  Aligned_cols=25  Identities=4%  Similarity=-0.233  Sum_probs=19.6

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        39 i~G~nGsGKSTLl~~l~Gl~~p~~G   63 (229)
T 2pze_A           39 VAGSTGAGKTSLLMMIMGELEPSEG   63 (229)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCCHHHHHHHHhCCCcCCcc
Confidence            5678999999999977666666655

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=88.09  E-value=0.049  Score=38.20  Aligned_cols=25  Identities=16%  Similarity=-0.133  Sum_probs=19.5

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        37 l~G~nGsGKSTLl~~l~Gl~~p~~G   61 (240)
T 1ji0_A           37 LIGANGAGKTTTLSAIAGLVRAQKG   61 (240)
T ss_dssp             EECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCc
Confidence            5678999999999977665556655

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=88.07  E-value=0.049  Score=38.73  Aligned_cols=25  Identities=12%  Similarity=-0.223  Sum_probs=19.2

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        37 liG~nGsGKSTLlk~l~Gl~~p~~G   61 (262)
T 1b0u_A           37 IIGSSGSGKSTFLRCINFLEKPSEG   61 (262)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCc
Confidence            5678999999999976555555555

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=88.07  E-value=0.049  Score=38.39  Aligned_cols=25  Identities=4%  Similarity=-0.144  Sum_probs=19.2

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        40 i~G~nGsGKSTLl~~l~Gl~~p~~G   64 (247)
T 2ff7_A           40 IVGRSGSGKSTLTKLIQRFYIPENG   64 (247)
T ss_dssp             EECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCc
Confidence            5678999999999976555556555

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=88.02  E-value=0.05  Score=38.61  Aligned_cols=25  Identities=16%  Similarity=-0.125  Sum_probs=19.0

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        46 l~G~NGsGKSTLlk~l~Gl~~p~~G   70 (256)
T 1vpl_A           46 LIGPNGAGKTTTLRIISTLIKPSSG   70 (256)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCce
Confidence            5678999999999976555555555

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=87.68  E-value=0.054  Score=38.61  Aligned_cols=25  Identities=16%  Similarity=-0.200  Sum_probs=19.5

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        55 liG~NGsGKSTLlk~l~Gl~~p~~G   79 (263)
T 2olj_A           55 VIGPSGSGKSTFLRCLNLLEDFDEG   79 (263)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EEcCCCCcHHHHHHHHHcCCCCCCc
Confidence            5678999999999977655556655

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=87.64  E-value=0.054  Score=38.33  Aligned_cols=25  Identities=8%  Similarity=-0.130  Sum_probs=19.2

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        36 l~G~nGsGKSTLl~~l~Gl~~p~~G   60 (253)
T 2nq2_C           36 VLGQNGCGKSTLLDLLLGIHRPIQG   60 (253)
T ss_dssp             EECCSSSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCc
Confidence            5678999999999977555555555

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=87.45  E-value=0.056  Score=38.76  Aligned_cols=25  Identities=8%  Similarity=-0.110  Sum_probs=18.8

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|||||||++-+..-..|+.|
T Consensus        39 iiGpnGsGKSTLl~~l~Gl~~p~~G   63 (275)
T 3gfo_A           39 ILGGNGVGKSTLFQNFNGILKPSSG   63 (275)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCCe
Confidence            5678999999999976555555554

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=87.43  E-value=0.044  Score=39.76  Aligned_cols=25  Identities=16%  Similarity=-0.096  Sum_probs=18.8

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++.+.....|+.|
T Consensus       174 l~G~sG~GKSTll~~l~g~~~~~~G  198 (301)
T 1u0l_A          174 MAGLSGVGKSSLLNAINPGLKLRVS  198 (301)
T ss_dssp             EECSTTSSHHHHHHHHSTTCCCC--
T ss_pred             EECCCCCcHHHHHHHhccccccccc
Confidence            5678999999999988666666655

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=87.37  E-value=0.048  Score=38.30  Aligned_cols=25  Identities=4%  Similarity=-0.153  Sum_probs=18.6

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|||||||++-+..-..|+.|
T Consensus        33 i~G~nGsGKSTLl~~l~Gl~~p~~G   57 (243)
T 1mv5_A           33 FAGPSGGGKSTIFSLLERFYQPTAG   57 (243)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCc
Confidence            5678999999999976555555544

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=87.36  E-value=0.058  Score=38.58  Aligned_cols=25  Identities=12%  Similarity=-0.146  Sum_probs=18.4

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        50 i~G~nGsGKSTLlk~l~Gl~~p~~G   74 (271)
T 2ixe_A           50 LVGPNGSGKSTVAALLQNLYQPTGG   74 (271)
T ss_dssp             EECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCC
Confidence            5678999999999966554445544

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=87.25  E-value=0.066  Score=35.71  Aligned_cols=16  Identities=6%  Similarity=-0.004  Sum_probs=13.6

Q ss_pred             ccccCCCCCceeeeec
Q 030931            2 LRVKQPYCTSCTLVKF   17 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f   17 (169)
                      |++..|+|||||++.+
T Consensus         5 l~G~nGsGKTTLl~~l   20 (178)
T 1ye8_A            5 ITGEPGVGKTTLVKKI   20 (178)
T ss_dssp             EECCTTSSHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHH
Confidence            5679999999999854

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=87.25  E-value=0.059  Score=38.72  Aligned_cols=25  Identities=8%  Similarity=-0.265  Sum_probs=18.7

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        52 liG~NGsGKSTLlk~l~Gl~~p~~G   76 (279)
T 2ihy_A           52 LYGLNGAGKTTLLNILNAYEPATSG   76 (279)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCcHHHHHHHHhCCCCCCCe
Confidence            5678999999999966555555544

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=87.10  E-value=0.077  Score=37.40  Aligned_cols=25  Identities=8%  Similarity=-0.306  Sum_probs=19.1

Q ss_pred             ccccCCCCCceeeeeceee--eeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLL--FLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~--~~~t~~   26 (169)
                      |++..|+|||||++-+..-  ..|+.|
T Consensus        34 l~G~nGsGKSTLlk~l~Gl~~~~p~~G   60 (250)
T 2d2e_A           34 LMGPNGAGKSTLGKILAGDPEYTVERG   60 (250)
T ss_dssp             EECSTTSSHHHHHHHHHTCTTCEEEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCCce
Confidence            5678999999999977554  456655

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=86.92  E-value=0.051  Score=38.76  Aligned_cols=25  Identities=8%  Similarity=-0.263  Sum_probs=19.0

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|||||||++-+..-..|+.|
T Consensus        42 liG~nGsGKSTLl~~l~Gl~~p~~G   66 (266)
T 4g1u_C           42 IIGPNGAGKSTLLRLLTGYLSPSHG   66 (266)
T ss_dssp             EECCTTSCHHHHHHHHTSSSCCSSC
T ss_pred             EECCCCCcHHHHHHHHhcCCCCCCc
Confidence            5678999999999976555555554

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=86.91  E-value=0.077  Score=38.36  Aligned_cols=25  Identities=4%  Similarity=-0.233  Sum_probs=19.8

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        69 i~G~NGsGKSTLlk~l~Gl~~p~~G   93 (290)
T 2bbs_A           69 VAGSTGAGKTSLLMMIMGELEPSEG   93 (290)
T ss_dssp             EEESTTSSHHHHHHHHTTSSCEEEE
T ss_pred             EECCCCCcHHHHHHHHhcCCCCCCc
Confidence            5678999999999977666666665

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=86.81  E-value=0.073  Score=40.92  Aligned_cols=16  Identities=6%  Similarity=-0.240  Sum_probs=14.0

Q ss_pred             ccccCCCCCceeeeec
Q 030931            2 LRVKQPYCTSCTLVKF   17 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f   17 (169)
                      +.+.+.+|||+|+|++
T Consensus        72 V~G~~~~GKStLLN~l   87 (447)
T 3q5d_A           72 VAGAFRKGKSFLMDFM   87 (447)
T ss_dssp             EEESTTSSHHHHHHHH
T ss_pred             EECCCCCcHHHHHHHH
Confidence            4678999999999986

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=86.75  E-value=1.4  Score=30.63  Aligned_cols=66  Identities=12%  Similarity=0.005  Sum_probs=44.0

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      .+.+.|+|+|+...  ......+..+|.+|+|... +..+...+...+..+.+.   ...++-+|.|+.+..
T Consensus       110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~-~~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~  175 (263)
T 1hyq_A          110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNP-EISSITDGLKTKIVAERL---GTKVLGVVVNRITTL  175 (263)
T ss_dssp             TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECS-SHHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTT
T ss_pred             hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCC-ChhHHHHHHHHHHHHHhc---CCCeeEEEEccCCcc
Confidence            57789999998644  3445567789999999876 344555555554444322   234667899999854

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=86.67  E-value=0.066  Score=38.13  Aligned_cols=25  Identities=12%  Similarity=-0.207  Sum_probs=18.3

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        38 liG~nGsGKSTLl~~i~Gl~~p~~G   62 (266)
T 2yz2_A           38 VAGNTGSGKSTLLQIVAGLIEPTSG   62 (266)
T ss_dssp             EECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCcHHHHHHHHhCCCCCCCc
Confidence            5678999999999966544445544

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=86.49  E-value=0.049  Score=39.55  Aligned_cols=24  Identities=17%  Similarity=-0.070  Sum_probs=19.1

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++.+. ...|+.|
T Consensus       170 l~G~sG~GKSTLln~l~-~~~~~~G  193 (302)
T 2yv5_A          170 LAGPSGVGKSSILSRLT-GEELRTQ  193 (302)
T ss_dssp             EECSTTSSHHHHHHHHH-SCCCCCS
T ss_pred             EECCCCCCHHHHHHHHH-HhhCccc
Confidence            56789999999999887 6656555

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=86.13  E-value=0.1  Score=35.47  Aligned_cols=22  Identities=9%  Similarity=-0.207  Sum_probs=16.7

Q ss_pred             ccccCCCCCceeeeeceeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLL   23 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~   23 (169)
                      |.+..|||||||++.+.....|
T Consensus        27 I~G~sGsGKSTl~~~l~~~~~~   48 (208)
T 3c8u_A           27 LSGAPGSGKSTLSNPLAAALSA   48 (208)
T ss_dssp             EECCTTSCTHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHhh
Confidence            5678999999999976544443

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=86.03  E-value=0.077  Score=37.78  Aligned_cols=24  Identities=8%  Similarity=-0.140  Sum_probs=19.6

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.... |+.|
T Consensus        35 i~G~NGsGKSTLlk~l~Gl~-p~~G   58 (263)
T 2pjz_A           35 ILGPNGSGKTTLLRAISGLL-PYSG   58 (263)
T ss_dssp             EECCTTSSHHHHHHHHTTSS-CCEE
T ss_pred             EECCCCCCHHHHHHHHhCCC-CCCc
Confidence            56789999999999876666 7666

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=85.89  E-value=0.062  Score=35.69  Aligned_cols=17  Identities=6%  Similarity=-0.205  Sum_probs=14.1

Q ss_pred             ccccCCCCCceeeeece
Q 030931            2 LRVKQPYCTSCTLVKFY   18 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~   18 (169)
                      |.+..|||||||++.+.
T Consensus        10 i~GpsGsGKSTL~~~L~   26 (180)
T 1kgd_A           10 LLGAHGVGRRHIKNTLI   26 (180)
T ss_dssp             EECCTTSSHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHH
Confidence            55688999999999763

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=85.80  E-value=0.062  Score=37.57  Aligned_cols=17  Identities=0%  Similarity=-0.203  Sum_probs=14.5

Q ss_pred             ccccCCCCCceeeeece
Q 030931            2 LRVKQPYCTSCTLVKFY   18 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~   18 (169)
                      |.+.+|||||||++.+.
T Consensus        32 l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           32 ILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             EECCTTSSHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHH
Confidence            56799999999999764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=85.64  E-value=0.06  Score=40.17  Aligned_cols=25  Identities=16%  Similarity=0.012  Sum_probs=19.2

Q ss_pred             ccccCCCCCceeeeeceeeee-eeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFL-LLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~-~t~~   26 (169)
                      |++..|+|||||++.+..... ++.|
T Consensus       220 lvG~sG~GKSTLln~L~g~~~~~~~G  245 (358)
T 2rcn_A          220 FAGQSGVGKSSLLNALLGLQNEILTN  245 (358)
T ss_dssp             EECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred             EECCCCccHHHHHHHHhccccccccC
Confidence            567899999999998865555 5544

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=85.10  E-value=0.072  Score=35.85  Aligned_cols=20  Identities=5%  Similarity=-0.169  Sum_probs=15.6

Q ss_pred             ccccCCCCCceeeeeceeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLF   21 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~   21 (169)
                      |.+..||||||+++.+....
T Consensus        11 l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A           11 LSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             EECSTTSCHHHHHHHHHHCT
T ss_pred             EECCCCCCHHHHHHHHHHhh
Confidence            56789999999999764443

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=84.98  E-value=3.5  Score=29.20  Aligned_cols=66  Identities=20%  Similarity=0.219  Sum_probs=42.1

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQDMK  107 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~  107 (169)
                      .+.+.|+|+|+..... ........+|++|+|+.... .+...+...++.+.+    .+.+++ +|.|+.|..
T Consensus       191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~----~~~~~~GvVlN~~~~~  257 (271)
T 3bfv_A          191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEA----TGAKLLGVVLNRMPKD  257 (271)
T ss_dssp             HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHT----TTCEEEEEEEEEECC-
T ss_pred             CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHh----CCCCEEEEEEeCCcCC
Confidence            3668999999864332 22334567899999998743 455555555554432    245555 899999864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=84.85  E-value=0.12  Score=36.87  Aligned_cols=25  Identities=4%  Similarity=-0.227  Sum_probs=18.5

Q ss_pred             ccccCCCCCceeeeeceee--eeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLL--FLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~--~~~t~~   26 (169)
                      |++..|+|||||++-+..-  +.|+.|
T Consensus        51 l~G~NGsGKSTLlk~l~Gl~~~~p~~G   77 (267)
T 2zu0_C           51 IMGPNGSGKSTLSATLAGREDYEVTGG   77 (267)
T ss_dssp             EECCTTSSHHHHHHHHHTCTTCEEEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCCCCCCCe
Confidence            5678999999999976554  345555

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=84.55  E-value=0.091  Score=34.93  Aligned_cols=19  Identities=16%  Similarity=-0.104  Sum_probs=15.5

Q ss_pred             ccccCCCCCceeeeeceee
Q 030931            2 LRVKQPYCTSCTLVKFYLL   20 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~   20 (169)
                      |.+.+|||||||++.+...
T Consensus        14 l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           14 LSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEECTTSCHHHHHHHHHTC
T ss_pred             EECCCCCCHHHHHHHHHhc
Confidence            5678999999999977543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=84.26  E-value=0.03  Score=40.86  Aligned_cols=25  Identities=12%  Similarity=-0.113  Sum_probs=15.5

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||+|.+.....++.|
T Consensus       178 lvG~sG~GKSTLln~L~g~~~~~~G  202 (307)
T 1t9h_A          178 FAGQSGVGKSSLLNAISPELGLRTN  202 (307)
T ss_dssp             EEESHHHHHHHHHHHHCC-------
T ss_pred             EECCCCCCHHHHHHHhccccccccc
Confidence            5678899999999988655555444

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=84.05  E-value=0.16  Score=34.82  Aligned_cols=24  Identities=4%  Similarity=-0.258  Sum_probs=18.1

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+... .|+.|
T Consensus        27 liG~nGsGKSTLl~~l~Gl-~p~~G   50 (208)
T 3b85_A           27 GLGPAGSGKTYLAMAKAVQ-ALQSK   50 (208)
T ss_dssp             EECCTTSSTTHHHHHHHHH-HHHTT
T ss_pred             EECCCCCCHHHHHHHHhcC-CCcCC
Confidence            5678999999999976554 45544

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=84.01  E-value=3.8  Score=28.54  Aligned_cols=70  Identities=11%  Similarity=0.023  Sum_probs=41.1

Q ss_pred             CEEEEEEEcCCCCCchhh-HHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPL-WRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDM  106 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~-~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl  106 (169)
                      .+.+.|+|+||....... .......+|.+|++... +..++..+...++.+.......+.+ .-+|.|+.+.
T Consensus       115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~  186 (269)
T 1cp2_A          115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV  186 (269)
T ss_dssp             TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred             CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecC-chhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence            578999999986432222 12223579999999876 4455555544444332211112455 4688999874

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=83.87  E-value=0.12  Score=34.70  Aligned_cols=18  Identities=0%  Similarity=-0.088  Sum_probs=14.7

Q ss_pred             ccccCCCCCceeeeecee
Q 030931            2 LRVKQPYCTSCTLVKFYL   19 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~   19 (169)
                      |.+..|||||||++.+..
T Consensus        12 l~Gp~GsGKSTl~~~L~~   29 (205)
T 3tr0_A           12 ISAPSGAGKTSLVRALVK   29 (205)
T ss_dssp             EECCTTSCHHHHHHHHHH
T ss_pred             EECcCCCCHHHHHHHHHh
Confidence            567899999999997643

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=83.03  E-value=0.14  Score=34.75  Aligned_cols=16  Identities=13%  Similarity=-0.037  Sum_probs=13.8

Q ss_pred             ccccCCCCCceeeeec
Q 030931            2 LRVKQPYCTSCTLVKF   17 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f   17 (169)
                      |++..|+|||||++.+
T Consensus        25 l~GpnGsGKSTLl~~l   40 (207)
T 1znw_A           25 LSGPSAVGKSTVVRCL   40 (207)
T ss_dssp             EECSTTSSHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHH
Confidence            5678999999999965

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=82.87  E-value=0.12  Score=38.56  Aligned_cols=25  Identities=4%  Similarity=-0.324  Sum_probs=18.8

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|||||||++-+..-..|+.|
T Consensus        35 llGpsGsGKSTLLr~iaGl~~p~~G   59 (359)
T 3fvq_A           35 IIGASGCGKTTLLRCLAGFEQPDSG   59 (359)
T ss_dssp             EEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EECCCCchHHHHHHHHhcCCCCCCc
Confidence            5678999999999976555555554

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=82.84  E-value=0.078  Score=38.66  Aligned_cols=25  Identities=12%  Similarity=0.006  Sum_probs=18.8

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|||||||++-+..-+.|+.|
T Consensus        85 ivG~sGsGKSTLl~ll~gl~~p~~G  109 (306)
T 3nh6_A           85 LVGPSGAGKSTILRLLFRFYDISSG  109 (306)
T ss_dssp             EESSSCHHHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCchHHHHHHHHHcCCCCCCc
Confidence            5678999999999966555555555

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=82.75  E-value=0.12  Score=38.60  Aligned_cols=25  Identities=12%  Similarity=-0.227  Sum_probs=19.0

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        59 IiGpnGaGKSTLlr~i~GL~~p~~G   83 (366)
T 3tui_C           59 VIGASGAGKSTLIRCVNLLERPTEG   83 (366)
T ss_dssp             EECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EEcCCCchHHHHHHHHhcCCCCCce
Confidence            5678999999999976555555555

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=82.75  E-value=0.12  Score=38.44  Aligned_cols=25  Identities=12%  Similarity=-0.277  Sum_probs=18.5

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|||||||++-+..-..|+.|
T Consensus        46 llGpnGsGKSTLLr~iaGl~~p~~G   70 (355)
T 1z47_A           46 LLGPSGSGKTTILRLIAGLERPTKG   70 (355)
T ss_dssp             EECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EECCCCCcHHHHHHHHhCCCCCCcc
Confidence            5778999999999966444445544

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=82.66  E-value=0.15  Score=34.49  Aligned_cols=16  Identities=25%  Similarity=0.050  Sum_probs=13.7

Q ss_pred             ccccCCCCCceeeeec
Q 030931            2 LRVKQPYCTSCTLVKF   17 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f   17 (169)
                      |.+..|+|||||++.+
T Consensus         9 lvGpsGaGKSTLl~~L   24 (198)
T 1lvg_A            9 LSGPSGAGKSTLLKKL   24 (198)
T ss_dssp             EECCTTSSHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHH
Confidence            5678899999999965

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=82.35  E-value=0.15  Score=34.48  Aligned_cols=19  Identities=0%  Similarity=-0.221  Sum_probs=15.0

Q ss_pred             ccccCCCCCceeeeeceee
Q 030931            2 LRVKQPYCTSCTLVKFYLL   20 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~   20 (169)
                      |.+..|||||||++.+...
T Consensus        11 i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A           11 IAGGTASGKTTLAQALART   29 (211)
T ss_dssp             EEESTTSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            4678999999999966443

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=82.33  E-value=0.13  Score=38.36  Aligned_cols=25  Identities=12%  Similarity=-0.029  Sum_probs=18.2

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|||||||++-+..-..|+.|
T Consensus        34 llGpnGsGKSTLLr~iaGl~~p~~G   58 (359)
T 2yyz_A           34 LLGPSGCGKTTTLLMLAGIYKPTSG   58 (359)
T ss_dssp             EECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EEcCCCchHHHHHHHHHCCCCCCcc
Confidence            5778999999999965444444444

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=82.32  E-value=0.13  Score=38.41  Aligned_cols=25  Identities=12%  Similarity=-0.121  Sum_probs=18.5

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|||||||++-+..-..|+.|
T Consensus        34 llGpnGsGKSTLLr~iaGl~~p~~G   58 (362)
T 2it1_A           34 LLGPSGSGKSTLLYTIAGIYKPTSG   58 (362)
T ss_dssp             EECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EECCCCchHHHHHHHHhcCCCCCce
Confidence            5778999999999966444445544

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=82.25  E-value=0.2  Score=32.23  Aligned_cols=18  Identities=11%  Similarity=-0.051  Sum_probs=14.7

Q ss_pred             ccccCCCCCceeeeecee
Q 030931            2 LRVKQPYCTSCTLVKFYL   19 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~   19 (169)
                      |.+..|+|||+|++.+..
T Consensus        41 l~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           41 VWGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             EESSSTTTTCHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            467899999999997643

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=82.11  E-value=0.14  Score=38.47  Aligned_cols=25  Identities=16%  Similarity=-0.230  Sum_probs=18.4

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        34 llGpnGsGKSTLLr~iaGl~~p~~G   58 (372)
T 1g29_1           34 LLGPSGCGKTTTLRMIAGLEEPSRG   58 (372)
T ss_dssp             EECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EECCCCcHHHHHHHHHHcCCCCCcc
Confidence            5778999999999966444445544

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=81.97  E-value=0.14  Score=38.44  Aligned_cols=25  Identities=16%  Similarity=-0.218  Sum_probs=17.2

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|||||||++-+..-..|+.|
T Consensus        42 llGpnGsGKSTLLr~iaGl~~p~~G   66 (372)
T 1v43_A           42 LLGPSGCGKTTTLRMIAGLEEPTEG   66 (372)
T ss_dssp             EECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EECCCCChHHHHHHHHHcCCCCCce
Confidence            5778999999999955333333333

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=81.84  E-value=0.12  Score=33.65  Aligned_cols=19  Identities=16%  Similarity=-0.066  Sum_probs=15.1

Q ss_pred             ccccCCCCCceeeeeceee
Q 030931            2 LRVKQPYCTSCTLVKFYLL   20 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~   20 (169)
                      |.+.+||||||+.+.+...
T Consensus         6 l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            6 LEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EECSSSSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            4568999999999977443

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=81.51  E-value=8.4  Score=28.43  Aligned_cols=120  Identities=10%  Similarity=-0.032  Sum_probs=54.5

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHH---HHHHHhcC------------CCCC-------
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQ---EFQAIIKD------------PFML-------   93 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~---~~~~~~~~------------~~~~-------   93 (169)
                      .+.+.|+|+|..-  .......+..||.+|++...+ ..++..+..   ++..+.+.            ...+       
T Consensus       153 ~yD~VIID~pP~l--~~~~~~aL~~aD~viip~~~~-~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (361)
T 3pg5_A          153 RYDVIFFDVGPSL--GPFNRTVLLGCDAFVTPTATD-LFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKT  229 (361)
T ss_dssp             CCSEEEEECCSCC--SHHHHHHHTTCSEEEEEECCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHT
T ss_pred             CCCEEEEECCCCc--CHHHHHHHHHCCEEEEEecCC-hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccccccc
Confidence            6889999999764  344555667799999999873 344433332   22222110            0001       


Q ss_pred             ------------CCeEEEEEeCCCCCCCCC-----------HhHHHhhh--------------------C----CCCCCC
Q 030931           94 ------------NSVILVFANKQDMKGAMT-----------PMEVCEGL--------------------G----LFDLKN  126 (169)
Q Consensus        94 ------------~~piivv~nK~Dl~~~~~-----------~~~~~~~~--------------------~----~~~~~~  126 (169)
                                  -..+=++.|..|......           .+.+....                    .    ....+.
T Consensus       230 ~~~~~~g~~~~~l~~lG~v~n~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~s~~~~aq~  309 (361)
T 3pg5_A          230 RPLRLGGFDGEGLRYLGYTTLEYVKRRANGQEQLVGAFERFRGRFAAEAERISNSLSKHSNSTLLGHVPHMHSMPATAQD  309 (361)
T ss_dssp             SSSCTTSSSSSCCEEEEEEECC-----------------TTHHHHHHHHHHHHHHSCSSCCCCEEEECC-----------
T ss_pred             cccccccccccccceeeEEEEcchhhcCCCchhhhHHHHHHHHHHHHHHHhccccccCCCCccccccCCchhhHHHHHHH
Confidence                        123457889988754332           12222222                    0    011245


Q ss_pred             ceeEEEEeeecc---------CCCHHHHHHHHHHHHHhhhc
Q 030931          127 RKWHIQGTCALK---------GDGLYEGLDWLASTLKEMRA  158 (169)
Q Consensus       127 ~~~~~~~~Sa~~---------~~gi~~~~~~l~~~~~~~~~  158 (169)
                      .+.|+|+.++.+         ..+..+.|..++..+.+...
T Consensus       310 ~~~Pi~~l~~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~  350 (361)
T 3pg5_A          310 VHAPIMELSSSDRVRGAQINQRNAYAEKINSVAANVYKALF  350 (361)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHHHC
T ss_pred             HCCCeEECchhcCCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            667888888755         55788899999988887653

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=81.45  E-value=5.1  Score=30.56  Aligned_cols=66  Identities=18%  Similarity=0.135  Sum_probs=39.1

Q ss_pred             CCEEEEEEEcCCCCCchh-hHH-----hhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCC
Q 030931           35 KNVIFTVWDVGGQEKLRP-LWR-----HYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMK  107 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~-~~~-----~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~  107 (169)
                      .++.+.|+||||...... ...     .....++.+++|+|.......-   .....+..     ..+ .-++.||.|..
T Consensus       182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~-----~l~i~gvVlnK~D~~  253 (433)
T 2xxa_A          182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE-----ALPLTGVVLTKVDGD  253 (433)
T ss_dssp             TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH-----HSCCCCEEEECTTSS
T ss_pred             CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc-----cCCCeEEEEecCCCC
Confidence            467899999999765422 111     1234789999999986433221   12222211     233 34689999975


Q ss_pred             C
Q 030931          108 G  108 (169)
Q Consensus       108 ~  108 (169)
                      .
T Consensus       254 ~  254 (433)
T 2xxa_A          254 A  254 (433)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=81.44  E-value=0.15  Score=38.40  Aligned_cols=25  Identities=12%  Similarity=-0.184  Sum_probs=18.9

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|||||||++-+..-..|+.|
T Consensus        34 llGpsGsGKSTLLr~iaGl~~p~~G   58 (381)
T 3rlf_A           34 FVGPSGCGKSTLLRMIAGLETITSG   58 (381)
T ss_dssp             EECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EEcCCCchHHHHHHHHHcCCCCCCe
Confidence            5778999999999976555555555

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=81.43  E-value=7.5  Score=27.76  Aligned_cols=68  Identities=9%  Similarity=-0.084  Sum_probs=43.2

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      .+.+.|+|+|+..... ......+.+|++|+|+.... .+...+...++.+.+.   ....+-+|.|+.|...
T Consensus       201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~---g~~~~GvVlN~v~~~~  268 (286)
T 3la6_A          201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQN---GIPVKGVILNSIFRRA  268 (286)
T ss_dssp             HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHT---TCCCCEEEEEEECCCC
T ss_pred             CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhC---CCCEEEEEEcCccccc
Confidence            3568999999875432 23445677999999998743 3445554444444322   1345668899998643

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=81.29  E-value=0.13  Score=37.88  Aligned_cols=25  Identities=4%  Similarity=-0.174  Sum_probs=18.5

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|||||||++.+.....|+.|
T Consensus       176 i~G~~GsGKTTll~~l~g~~~~~~g  200 (330)
T 2pt7_A          176 VCGGTGSGKTTYIKSIMEFIPKEER  200 (330)
T ss_dssp             EEESTTSCHHHHHHHGGGGSCTTSC
T ss_pred             EECCCCCCHHHHHHHHhCCCcCCCc
Confidence            4568999999999977555555444

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=81.24  E-value=0.15  Score=33.29  Aligned_cols=19  Identities=11%  Similarity=-0.274  Sum_probs=15.1

Q ss_pred             ccccCCCCCceeeeeceee
Q 030931            2 LRVKQPYCTSCTLVKFYLL   20 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~   20 (169)
                      |.+..||||||+.+.+...
T Consensus         9 l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            9 LVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             EECCTTSCHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            4568999999999976443

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=81.16  E-value=0.17  Score=32.98  Aligned_cols=24  Identities=4%  Similarity=-0.312  Sum_probs=17.1

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.... |+.|
T Consensus        38 L~G~nGaGKTTLlr~l~g~l-~~~G   61 (158)
T 1htw_A           38 LNGDLGAGKTTLTRGMLQGI-GHQG   61 (158)
T ss_dssp             EECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred             EECCCCCCHHHHHHHHHHhC-CCCC
Confidence            56788999999999664443 4433

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=81.14  E-value=0.13  Score=33.72  Aligned_cols=18  Identities=11%  Similarity=-0.258  Sum_probs=14.9

Q ss_pred             ccccCCCCCceeeeecee
Q 030931            2 LRVKQPYCTSCTLVKFYL   19 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~   19 (169)
                      |.+-+||||||+.+++..
T Consensus         7 i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            7 TIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EECCTTSSHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHHHHh
Confidence            456899999999998754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=80.70  E-value=0.69  Score=29.25  Aligned_cols=19  Identities=11%  Similarity=-0.228  Sum_probs=15.2

Q ss_pred             ccccCCCCCceeeeeceee
Q 030931            2 LRVKQPYCTSCTLVKFYLL   20 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~   20 (169)
                      |.+.+|+|||++.+.+...
T Consensus        32 l~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           32 LTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             EEEETTCCHHHHHGGGCCT
T ss_pred             EECCCCccHHHHHHHHHHh
Confidence            5579999999999877544

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=80.70  E-value=0.19  Score=33.12  Aligned_cols=20  Identities=5%  Similarity=-0.193  Sum_probs=15.5

Q ss_pred             ccccCCCCCceeeeeceeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLF   21 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~   21 (169)
                      |.+.+|+|||+|++.+....
T Consensus        43 l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           43 FVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             ECCSSSSSHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHH
Confidence            45789999999999764443

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=80.68  E-value=0.13  Score=33.28  Aligned_cols=16  Identities=6%  Similarity=-0.282  Sum_probs=13.9

Q ss_pred             ccccCCCCCceeeeec
Q 030931            2 LRVKQPYCTSCTLVKF   17 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f   17 (169)
                      |.+-+||||||+.+.+
T Consensus         6 l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            6 ITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EECCTTSCHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHH
Confidence            4568999999999987

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=80.60  E-value=0.21  Score=34.43  Aligned_cols=20  Identities=10%  Similarity=-0.094  Sum_probs=10.8

Q ss_pred             ccccCCCCCceeeeece-eee
Q 030931            2 LRVKQPYCTSCTLVKFY-LLF   21 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-~~~   21 (169)
                      |.+..|+|||||++.+. ...
T Consensus        32 l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           32 LSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             EECSCC----CHHHHHHC---
T ss_pred             EECCCCCCHHHHHHHHHhcCC
Confidence            56789999999999876 543

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=80.51  E-value=0.19  Score=33.34  Aligned_cols=17  Identities=12%  Similarity=-0.048  Sum_probs=14.5

Q ss_pred             ccccCCCCCceeeeece
Q 030931            2 LRVKQPYCTSCTLVKFY   18 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~   18 (169)
                      |.+..|+|||||++.+.
T Consensus         7 l~G~~GaGKSTl~~~L~   23 (189)
T 2bdt_A            7 ITGPAGVGKSTTCKRLA   23 (189)
T ss_dssp             EECSTTSSHHHHHHHHH
T ss_pred             EECCCCCcHHHHHHHHh
Confidence            56789999999999874

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=80.22  E-value=0.2  Score=34.35  Aligned_cols=18  Identities=6%  Similarity=-0.105  Sum_probs=14.6

Q ss_pred             ccccCCCCCceeeeecee
Q 030931            2 LRVKQPYCTSCTLVKFYL   19 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~   19 (169)
                      |++..|+|||||++.+..
T Consensus        28 lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           28 ICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             EECSTTSSHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHh
Confidence            567899999999997643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	169
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-24
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-20
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-20
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-19
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	5e-18
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-17
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-16
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	6e-16
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-15
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-14
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	7e-14
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-13
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	6e-13
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	2e-12
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-12
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-12
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	3e-12
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-11
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	1e-10
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	3e-09
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-09
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	8e-09
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	5e-08
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-07
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	6e-07
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	9e-07
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-06
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	6e-06
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-05
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	4e-05
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	0.002
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	0.002
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	0.003

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 91.6 bits (226), Expect = 1e-24
 Identities = 77/130 (59%), Positives = 96/130 (73%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           V FNVE V YKNV F VWDVGGQ+K+RPLWRHY+  T GLI+VVD  DR+RI +A+QE  
Sbjct: 44  VGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELH 103

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            II D  M +++IL+FANKQD+  AM P E+ E LGL  +++R W++Q +CA  GDGLYE
Sbjct: 104 RIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 163

Query: 145 GLDWLASTLK 154
           GL WL S  K
Sbjct: 164 GLTWLTSNYK 173

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 80.9 bits (198), Expect = 2e-20
 Identities = 76/127 (59%), Positives = 100/127 (78%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           FNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   +
Sbjct: 34  FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM 93

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           + +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLYEGL
Sbjct: 94  LAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153

Query: 147 DWLASTL 153
           DWL++ L
Sbjct: 154 DWLSNQL 160

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 80.8 bits (198), Expect = 3e-20
 Identities = 59/131 (45%), Positives = 90/131 (68%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           FNVE + YKN+   VWD+GGQ  +RP WR Y+ +T  +I+VVDS D++R+  A +E   +
Sbjct: 51  FNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLM 110

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           +++  + ++ +LVFANKQD  GA++  EV + L L +LK+R W I  + A+KG+G+ EGL
Sbjct: 111 LQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL 170

Query: 147 DWLASTLKEMR 157
           DWL   +KE +
Sbjct: 171 DWLIDVIKEEQ 181

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 77.7 bits (190), Expect = 4e-19
 Identities = 54/129 (41%), Positives = 81/129 (62%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
             FN++ VQ +     VWD+GGQ K+RP WR YF NTD LIYV+DS DR+R  +  QE  
Sbjct: 48  QGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELT 107

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
            ++++  +    +L+FANKQD+  A    E+ EGL L  +++R W IQ   AL G+G+ +
Sbjct: 108 ELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQD 167

Query: 145 GLDWLASTL 153
           G++W+   +
Sbjct: 168 GMNWVCKNV 176

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 74.7 bits (182), Expect = 5e-18
 Identities = 51/131 (38%), Positives = 86/131 (65%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
           + FN++ ++++     +WDVGGQ+ LR  WR+YF +TDGLI+VVDS DR+R+   ++E Q
Sbjct: 34  LGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQ 93

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE 144
           +++ +  +  + +L+FANKQD+ GA++   + E L L  +++  W IQG  A+ G+ L  
Sbjct: 94  SLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLP 153

Query: 145 GLDWLASTLKE 155
           G+DWL   +  
Sbjct: 154 GIDWLLDDISS 164

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 73.1 bits (178), Expect = 2e-17
 Identities = 58/128 (45%), Positives = 83/128 (64%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
            NVE++   N  F +WD+GGQE LR  W  Y+ NT+ +I VVDS DRERI   ++E   +
Sbjct: 49  SNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM 108

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           +    +  + +L+FANKQD+K  MT  E+ + L L  +K+ +WHIQ  CAL G+GL +GL
Sbjct: 109 LAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 168

Query: 147 DWLASTLK 154
           +W+ S LK
Sbjct: 169 EWMMSRLK 176

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.8 bits (170), Expect = 3e-16
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 4/125 (3%)

Query: 31  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP 90
           ++  K +   +WD  GQE+ R +   Y+    G++ V D  + +     +   + I +  
Sbjct: 49  ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA 108

Query: 91  FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150
                 +++              E     G     +       T A     +      LA
Sbjct: 109 SADVEKMILGNKCDVNDKRQVSKER----GEKLALDYGIKFMETSAKANINVENAFFTLA 164

Query: 151 STLKE 155
             +K 
Sbjct: 165 RDIKA 169

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.0 bits (168), Expect = 6e-16
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 5/125 (4%)

Query: 31  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP 90
            +  K V   +WD  GQE+ R +   Y+    G+I V D  D        +++   + + 
Sbjct: 45  DINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTF-TNIKQWFKTVNEH 103

Query: 91  FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150
               + +L+  NK DM+  +   +     G    K        + A   D + E    LA
Sbjct: 104 ANDEAQLLLVGNKSDMETRVVTADQ----GEALAKELGIPFIESSAKNDDNVNEIFFTLA 159

Query: 151 STLKE 155
             ++E
Sbjct: 160 KLIQE 164

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.2 bits (165), Expect = 1e-15
 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 7/133 (5%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQ 84
                E++   N+ FT +D+GG  + R LW+ YF   +G++++VD+ D ER  +A+ E  
Sbjct: 32  WHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELD 91

Query: 85  AIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-------KNRKWHIQGTCAL 137
           A+     + +   ++  NK D   A++  E+   LGL +          R   +     +
Sbjct: 92  ALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV 151

Query: 138 KGDGLYEGLDWLA 150
             +G  E   WL+
Sbjct: 152 MRNGYLEAFQWLS 164

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (157), Expect = 3e-14
 Identities = 23/125 (18%), Positives = 38/125 (30%), Gaps = 4/125 (3%)

Query: 31  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP 90
            V        +WD  GQE+ R L   Y+    G+I V D   R+   K       +    
Sbjct: 50  SVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYC 109

Query: 91  FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150
              + V ++  NK D +                 +          A   DG+    + L 
Sbjct: 110 TRNDIVNMLVGNKIDKENREVDRNEGLKF----ARKHSMLFIEASAKTCDGVQCAFEELV 165

Query: 151 STLKE 155
             + +
Sbjct: 166 EKIIQ 170

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.1 bits (155), Expect = 7e-14
 Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 4/125 (3%)

Query: 31  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP 90
           ++  K V   +WD  GQE+ R +   Y+  + G+I V D  D+E     K   Q I +  
Sbjct: 49  ELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA 108

Query: 91  FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150
                 +LV          +   +V +          K     T AL    + +    +A
Sbjct: 109 TSTVLKLLVGNKCDLKDKRVVEYDVAK----EFADANKMPFLETSALDSTNVEDAFLTMA 164

Query: 151 STLKE 155
             +KE
Sbjct: 165 RQIKE 169

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 62.4 bits (150), Expect = 3e-13
 Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 12/139 (8%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
              E++    + FT +D+GG  + R +W++Y    +G++++VD  D ER+ ++K+E  ++
Sbjct: 47  PTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSL 106

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGT 134
           + D  + N  IL+  NK D   A++   + E  GL+            +L  R   +   
Sbjct: 107 MTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMC 166

Query: 135 CALKGDGLYEGLDWLASTL 153
             LK  G  EG  W+A  +
Sbjct: 167 SVLKRQGYGEGFRWMAQYI 185

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.0 bits (147), Expect = 6e-13
 Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 4/124 (3%)

Query: 32  VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
              K +   +WD  GQE+ R +   Y+    G I + D  + E     +     I    +
Sbjct: 49  RNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW 108

Query: 92  MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151
               V+LV          +   E           +  +      A     + +  + L  
Sbjct: 109 DNAQVLLVGNKCDMEDERVVSSERGR----QLADHLGFEFFEASAKDNINVKQTFERLVD 164

Query: 152 TLKE 155
            + E
Sbjct: 165 VICE 168

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 2e-12
 Identities = 26/135 (19%), Positives = 39/135 (28%), Gaps = 4/135 (2%)

Query: 26  RFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQA 85
              +  V  K V   +WD  GQE+ R + R Y+    G + V D   RE           
Sbjct: 43  GSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD 102

Query: 86  IIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG 145
                     +IL    K                     +  +     T AL G+ + E 
Sbjct: 103 ARMLASQNIVIILCGNKKDLDADREVTFLEASRF----AQENELMFLETSALTGENVEEA 158

Query: 146 LDWLASTLKEMRAAG 160
               A  +     +G
Sbjct: 159 FVQCARKILNKIESG 173

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 2e-12
 Identities = 38/128 (29%), Positives = 66/128 (51%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           FN+ K+   NV   +WD+GGQ + R +W  Y      ++Y+VD+ D+E+I  +K E   +
Sbjct: 37  FNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNL 96

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           +  P +    +LV  NK+D+ GA+   E+ E + L  +++R+         + D +   L
Sbjct: 97  LDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL 156

Query: 147 DWLASTLK 154
            WL    K
Sbjct: 157 QWLIQHSK 164

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 2e-12
 Identities = 69/131 (52%), Positives = 92/131 (70%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
           FNVE V YKN+ F VWD+GG   +RP WR Y++NTD +IYVVDS DR+RIG +K E  A+
Sbjct: 39  FNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAM 98

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
           +++  +  ++++VFANKQDM+ AMT  E+   LGL  LK+RKW I  T A KG GL E +
Sbjct: 99  LEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 158

Query: 147 DWLASTLKEMR 157
           +WL  TLK  +
Sbjct: 159 EWLVETLKSRQ 169

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 3e-12
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 3/129 (2%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
            N    +   V   +WD  GQE+ R L   +F +  G + + D   ++     +     +
Sbjct: 54  PNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL 113

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
             + +  N  I++  NK D+       EV E                T A  G  + + +
Sbjct: 114 QANAYCENPDIVLIGNKADL---PDQREVNERQARELADKYGIPYFETSAATGQNVEKAV 170

Query: 147 DWLASTLKE 155
           + L   + +
Sbjct: 171 ETLLDLIMK 179

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 3e-11
 Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 4/123 (3%)

Query: 32  VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
           V    V   +WD  GQE+ R +   Y+ +   L+ + D  ++      +     I +   
Sbjct: 51  VDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ 110

Query: 92  MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151
              +++L+               V    G    K        T A  G  +      +A 
Sbjct: 111 HDVALMLLGNKVDSAH----ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 166

Query: 152 TLK 154
            LK
Sbjct: 167 ELK 169

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.9 bits (134), Expect = 1e-10
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 10/90 (11%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVV----------DSLDRERI 76
               K Q   V F ++DVGGQ   R  W   FN+   +I+VV          +     R+
Sbjct: 37  IFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRL 96

Query: 77  GKAKQEFQAIIKDPFMLNSVILVFANKQDM 106
            +A   F++I  + ++    +++F NKQD+
Sbjct: 97  QEALNLFKSIWNNRWLRTISVILFLNKQDL 126

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 3e-09
 Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 4/123 (3%)

Query: 31  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP 90
           ++  + V   +WD  GQE+ R + + Y+ + + LI   D    E      +  + I +  
Sbjct: 48  EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA 107

Query: 91  FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150
                 +LV       +      EV +       + +  +   T A + D + +    LA
Sbjct: 108 SNKVITVLVGNKIDLAE----RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 163

Query: 151 STL 153
             L
Sbjct: 164 CRL 166

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 3e-09
 Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 4/126 (3%)

Query: 31  KVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDP 90
           +V  K +   +WD  GQE+ R +   Y+    G + V D          ++  +  ++D 
Sbjct: 47  QVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLK-ELRDH 105

Query: 91  FMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150
              N VI++  NK D+        V         +        T AL    + E    + 
Sbjct: 106 ADSNIVIMLVGNKSDL---RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 162

Query: 151 STLKEM 156
           + +  +
Sbjct: 163 TEIYRI 168

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 8e-09
 Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 4/127 (3%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAI 86
             + +V  + +   +WD  GQE+ R + R Y+    G + V D   R         +   
Sbjct: 43  TRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTD 101

Query: 87  IKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGL 146
            ++    N+VI++  NK D+       +V         +          A  G+ + +  
Sbjct: 102 ARNLTNPNTVIILIGNKADL---EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 158

Query: 147 DWLASTL 153
              A  +
Sbjct: 159 LEAAKKI 165

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.7 bits (112), Expect = 5e-08
 Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 1/122 (0%)

Query: 33  QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFM 92
               V F +WD  GQE+   L   Y+ N    + V D    +   KA+   + + +    
Sbjct: 48  NEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK 107

Query: 93  LNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152
            + +I +  NK DM       +V    G    + +      T A  G+ + +    +   
Sbjct: 108 -DIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEK 166

Query: 153 LK 154
           + 
Sbjct: 167 IP 168

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (111), Expect = 1e-07
 Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 33/162 (20%)

Query: 25  VRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGK------ 78
                     ++VIF + DVGGQ   R  W H F N   ++++V   + +++        
Sbjct: 33  TGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNEN 92

Query: 79  ----AKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCE----------------- 117
               +K  F+ II  P+  NS +++F NK+D+                            
Sbjct: 93  RMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAR 152

Query: 118 ------GLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL 153
                  + L    ++  +   TCA   + +      +  T+
Sbjct: 153 EFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 194

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 6e-07
 Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 4/128 (3%)

Query: 28  NVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAII 87
            +  +  K +   +WD  GQE  R + R Y+    G + V D   RE         +   
Sbjct: 43  RMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR 102

Query: 88  KDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD 147
           +     N VI++  NK D++            G    +        T A     + E   
Sbjct: 103 QH-SSSNMVIMLIGNKSDLESRRDVKREE---GEAFAREHGLIFMETSAKTACNVEEAFI 158

Query: 148 WLASTLKE 155
             A  +  
Sbjct: 159 NTAKEIYR 166

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 9e-07
 Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 7/123 (5%)

Query: 25  VRFNVEKVQYKN----VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER-IGKA 79
           +  +    +  N     +  +   G +     L   + ++   +++VVDS   +R +   
Sbjct: 32  ITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDV 91

Query: 80  KQEFQAIIKDPFMLNSV--ILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCAL 137
            +    ++ D   L +   +L+  NKQD+  A +   + + L       R         L
Sbjct: 92  AEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL 151

Query: 138 KGD 140
              
Sbjct: 152 DSS 154

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 2e-06
 Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 4/124 (3%)

Query: 32  VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPF 91
           +    V F +WD  GQE+   L   Y+      I V D  + E   +AK   + + +   
Sbjct: 50  LDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS 109

Query: 92  MLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS 151
               + L               +  +        +       T A     + E    +A 
Sbjct: 110 PNIVIALSGNKADLANKRAVDFQEAQ----SYADDNSLLFMETSAKTSMNVNEIFMAIAK 165

Query: 152 TLKE 155
            L +
Sbjct: 166 KLPK 169

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.2 bits (98), Expect = 6e-06
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 10/90 (11%)

Query: 27  FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----------RI 76
            +    + KNV F + DVGGQ   R  W   F++   ++++V S + +          R+
Sbjct: 34  IHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRL 93

Query: 77  GKAKQEFQAIIKDPFMLNSVILVFANKQDM 106
            ++   F+ I+ +    N  I++F NK D+
Sbjct: 94  TESLNIFETIVNNRVFSNVSIILFLNKTDL 123

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 3/118 (2%)

Query: 33  QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFM 92
                +  + D  G E+   +   Y  N  G I V   ++++     K     II+    
Sbjct: 47  DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY 106

Query: 93  LNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA 150
               +++  NK D+    +  EV    G    +        T A     + E    + 
Sbjct: 107 EKVPVILVGNKVDL---ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 4e-05
 Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 4/121 (3%)

Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
           K V   +WD  GQE+   L   Y+ +++G I V D  D +   K K   + + K      
Sbjct: 50  KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI 109

Query: 95  SVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 154
            + +V       K     ++  E       ++       T A +  G+ E    L   + 
Sbjct: 110 CLCIVGNKIDLEKERHVSIQEAESY----AESVGAKHYHTSAKQNKGIEELFLDLCKRMI 165

Query: 155 E 155
           E
Sbjct: 166 E 166

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 4/121 (3%)

Query: 36  NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNS 95
            +   +WD  GQE+ R L   Y  ++   + V D  +     +  +    +  +    + 
Sbjct: 48  TIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDV 106

Query: 96  VILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE 155
           +I++  NK D+                  K        T A  G  + +    +A+ L  
Sbjct: 107 IIMLVGNKTDLADKRQVSIEEGE---RKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 163

Query: 156 M 156
           M
Sbjct: 164 M 164

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 3/122 (2%)

Query: 33  QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFM 92
             + V   + D  GQE    +  +YF + +G + V    + E         + I++    
Sbjct: 48  DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED 107

Query: 93  LNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST 152
            N   L+  NK D++     + V E     D  N  +    T A     + +    L   
Sbjct: 108 ENVPFLLVGNKSDLED-KRQVSVEEAKNRADQWNVNYVE--TSAKTRANVDKVFFDLMRE 164

Query: 153 LK 154
           ++
Sbjct: 165 IR 166

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 14/123 (11%), Positives = 31/123 (25%)

Query: 35  KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN 94
           + V   +WD  GQE+ + L   ++   D  + V D                 +      +
Sbjct: 49  RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 108

Query: 95  SVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK 154
                F    +           +    +           T A +   + +    +A    
Sbjct: 109 PENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 168

Query: 155 EMR 157
           +  
Sbjct: 169 KQE 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	169
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	100.0
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.98
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.97
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.97
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.97
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.97
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.97
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.97
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.97
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.97
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.96
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.96
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.96
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.96
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.95
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.95
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.94
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.94
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.93
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.93
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.91
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.89
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.86
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.86
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.85
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.84
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.84
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.84
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.81
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.77
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.77
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.76
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.71
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.7
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.69
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.67
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.67
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.64
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.63
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.62
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.6
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.57
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.49
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.48
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.42
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.34
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.21
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.12
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.03
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.84
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.66
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.26
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.2
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.18
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.16
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.09
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	97.95
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.92
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	97.91
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.86
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.1
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	95.9
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.88
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.81
d1ls1a2	207	GTPase domain of the signal sequence recognition p	94.78
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.0
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.67
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	91.0
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	90.62
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	90.61
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	89.72
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	89.63
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	89.14
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	88.99
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	88.85
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	88.74
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	88.69
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	88.67
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	88.67
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	88.58
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	87.59
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	87.31
d2awna2	232	Maltose transport protein MalK, N-terminal domain	87.31
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	87.29
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	87.18
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	87.17
d1g2912	240	Maltose transport protein MalK, N-terminal domain	87.07
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	87.02
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	86.71
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	86.09
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	84.81
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	84.72
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	84.31
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	83.58
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	83.57
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	83.47
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	83.38
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	83.36
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	83.05
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	82.77
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	82.59
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	82.22
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	81.81
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	81.72
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	81.66
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	81.57
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	81.56
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	81.41
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	81.28
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	81.18
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	80.98
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	80.86

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=100.00  E-value=1.5e-35  Score=201.77  Aligned_cols=157  Identities=38%  Similarity=0.742  Sum_probs=138.3

Q ss_pred             CccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931            1 MLRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI   76 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~   76 (169)
                      ++++.+++|||||+++|    .....||.+........+++++.+||++|++.+..++..+++.++++++|||++++.++
T Consensus        21 ~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~  100 (182)
T d1moza_          21 LILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRM  100 (182)
T ss_dssp             EEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTH
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHhhhccceeEEEEeeecccccc
Confidence            36789999999999987    35566788888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931           77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      .....|+...++.....+.|+++|+||+|+.+..+.+++.+.++...+..+++++++|||++|+|++++|+||++.+.++
T Consensus       101 ~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         101 STASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            99999998888777677899999999999988888889998888777777889999999999999999999999998875


Q ss_pred             h
Q 030931          157 R  157 (169)
Q Consensus       157 ~  157 (169)
                      +
T Consensus       181 ~  181 (182)
T d1moza_         181 Q  181 (182)
T ss_dssp             H
T ss_pred             C
Confidence            4

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=199.18  Aligned_cols=152  Identities=26%  Similarity=0.483  Sum_probs=140.1

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI   76 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~   76 (169)
                      +++.+++|||||+++|     .+.+.||+++++..++.+.+.+++||+||++.+...+..++..++++++|||++++.+|
T Consensus         7 i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~   86 (164)
T d1zd9a1           7 LVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI   86 (164)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGH
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhccccccccccc
Confidence            6789999999999976     67788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931           77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                      .....|+..+++....++.|+++|+||+|+.+..+..++.+.++...+...+++++++||++|+|++++|+||++.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1          87 EASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             HHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             chhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHcc
Confidence            99999999998877778999999999999988788888888888777778889999999999999999999998753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=100.00  E-value=6.7e-35  Score=195.52  Aligned_cols=154  Identities=35%  Similarity=0.685  Sum_probs=137.9

Q ss_pred             ccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+++|||||+++|    .+.+.||.+.....++.+++.+.+||++|++.++..+..+++.++++++|||+++..++.
T Consensus         7 ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~   86 (165)
T d1ksha_           7 MLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQ   86 (165)
T ss_dssp             EECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHH
T ss_pred             EECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecccchhHH
Confidence            6789999999999987    456778888998999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHh
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKE  155 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~  155 (169)
                      ....++...+......+.|+++|+||+|+.+.....+....+....+..+.+++++|||++|+|++++|+||++.+.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_          87 DCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence            999888888776666789999999999998888877777777666666778899999999999999999999998765

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=195.85  Aligned_cols=153  Identities=51%  Similarity=0.907  Sum_probs=138.2

Q ss_pred             CccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931            1 MLRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI   76 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~   76 (169)
                      ++++.+++|||||++||    .....||.++.........+.+.+||+||++.++..+..++++++++++|+|+++.+++
T Consensus        16 vlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~   95 (173)
T d1e0sa_          16 LMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRI   95 (173)
T ss_dssp             EEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGH
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEEecccchhH
Confidence            36789999999999998    45566788888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931           77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                      ..+..|+...++.....+.|+++++||+|+.++....++...+++..+..+++.+++|||++|+||.++|+||...+
T Consensus        96 ~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_          96 DEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence            99999999888766667899999999999998888888888888777778889999999999999999999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=100.00  E-value=3e-34  Score=194.16  Aligned_cols=151  Identities=37%  Similarity=0.682  Sum_probs=135.1

Q ss_pred             ccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      +++.+++|||||+++|.    ....|+.+++...++.+++.+.+||++|++.+...+..+++.++++++|||+++..++.
T Consensus        21 vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~  100 (176)
T d1fzqa_          21 LLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFE  100 (176)
T ss_dssp             EEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHH
T ss_pred             EECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEeeccccccchh
Confidence            57799999999999883    35567788888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      .+..|+..+.......++|+++++||+|+.++....++.+.+.......+.+++++|||++|+|++++|+||++.
T Consensus       101 ~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         101 ETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             HHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             hhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhc
Confidence            999999888776666789999999999998877777777777766667778899999999999999999999874

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-34  Score=194.22  Aligned_cols=150  Identities=17%  Similarity=0.214  Sum_probs=125.1

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+++|||||++||     .+.+.||++.++.....    ..+++.+||++|++.+..++..++++++++++|||++
T Consensus         7 ~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~   86 (170)
T d1i2ma_           7 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVT   86 (170)
T ss_dssp             EEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhccccc
Confidence            36789999999999986     66788999877655444    5799999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ++++|+.+..|+..+.+..  +++|+++||||+|+.......+..     ......+++|++|||++|.||+++|++|++
T Consensus        87 ~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~-----~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~  159 (170)
T d1i2ma_          87 SRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFEKPFLWLAR  159 (170)
T ss_dssp             SGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTSH-----HHHSSCSSEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             cccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhHHH-----HHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999887643  589999999999997654332211     122455678999999999999999999999


Q ss_pred             HHHhhh
Q 030931          152 TLKEMR  157 (169)
Q Consensus       152 ~~~~~~  157 (169)
                      .+.+.+
T Consensus       160 ~l~~~~  165 (170)
T d1i2ma_         160 KLIGDP  165 (170)
T ss_dssp             HHHTCT
T ss_pred             HHccCC
Confidence            887654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=194.69  Aligned_cols=152  Identities=14%  Similarity=0.025  Sum_probs=109.5

Q ss_pred             CccccCCCCCceeeeece----eeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            1 MLRVKQPYCTSCTLVKFY----LLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~----~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      +|++.+|+|||||+++|.    ..+.||.+..+ ..+..  ..+.+.+||++|++++..++..+++++|++|+|||++++
T Consensus         5 ~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~   84 (168)
T d2gjsa1           5 LLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDK   84 (168)
T ss_dssp             EEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEETTCH
T ss_pred             EEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceecccccc
Confidence            367899999999999872    23345555443 23443  568999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      .+|+.+..|+.++.......++|+++||||+|+.+..  +..+.. .+    .+..+++|++|||++|.||+++|.++++
T Consensus        85 ~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          85 GSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR-AC----AVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             HHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             ccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHH-HH----HHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            9999999999988765555679999999999986532  222221 11    1334567999999999999999999999


Q ss_pred             HHHhhh
Q 030931          152 TLKEMR  157 (169)
Q Consensus       152 ~~~~~~  157 (169)
                      .+..++
T Consensus       160 ~i~~~~  165 (168)
T d2gjsa1         160 QIRLRR  165 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            887765

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.98  E-value=3.5e-34  Score=192.70  Aligned_cols=150  Identities=16%  Similarity=0.151  Sum_probs=120.3

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE-EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +|++.+++|||||++||     .+.+.||++..+.. +..  ..+.+.+||++|++.+..++..++++++++++|||+++
T Consensus         8 vlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   87 (168)
T d1u8za_           8 IMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE   87 (168)
T ss_dssp             EEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTC
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEEeeccc
Confidence            36789999999999975     57788999876543 333  56889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+|+.+..|+.++.+....++.|+++||||+|+.+.  .+.++....     .+..+++|++|||++|.||+++|++++
T Consensus        88 ~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sak~g~gv~e~f~~l~  162 (168)
T d1u8za_          88 MESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR-----ADQWNVNYVETSAKTRANVDKVFFDLM  162 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHH-----HHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHH-----HHHcCCeEEEEcCCCCcCHHHHHHHHH
Confidence            9999999999999877544568999999999998653  233333221     133456799999999999999999999


Q ss_pred             HHHHh
Q 030931          151 STLKE  155 (169)
Q Consensus       151 ~~~~~  155 (169)
                      +.+..
T Consensus       163 ~~i~~  167 (168)
T d1u8za_         163 REIRA  167 (168)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            98764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-32  Score=183.53  Aligned_cols=149  Identities=12%  Similarity=0.090  Sum_probs=121.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEEE---EECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKV---QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      |++.+|+|||||++||     .+.+.||++..+...   +...+.+++||++|++.+..+++.++++++++|+|||++++
T Consensus         8 vvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   87 (167)
T d1c1ya_           8 VLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQ   87 (167)
T ss_dssp             EECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEeeeccch
Confidence            6789999999999976     667788888655432   23679999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ++|+.+..|+..+.+....++.|+++||||+|+....  ..++......    +..+++|++|||++|+||+++|+++++
T Consensus        88 ~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~gv~e~F~~l~~  163 (167)
T d1c1ya_          88 STFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR----QWCNCAFLESSAKSKINVNEIFYDLVR  163 (167)
T ss_dssp             HHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----HTTSCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             hhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHH----HhCCCEEEEEcCCCCcCHHHHHHHHHH
Confidence            9999999999988765455689999999999986532  2222222111    123467999999999999999999998


Q ss_pred             HHH
Q 030931          152 TLK  154 (169)
Q Consensus       152 ~~~  154 (169)
                      .+.
T Consensus       164 ~i~  166 (167)
T d1c1ya_         164 QIN  166 (167)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            774

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-32  Score=185.71  Aligned_cols=154  Identities=16%  Similarity=0.187  Sum_probs=117.0

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE---EEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK---VQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~---~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +|++.+|+|||||++||     .+.+.||++.....   .+...+++++||++|++.+..+++.++++++++|+|||+++
T Consensus         6 vvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   85 (177)
T d1kmqa_           6 VIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS   85 (177)
T ss_dssp             EEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhcccch
Confidence            46789999999999975     66788898855432   22367889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCC---------CCC-ceeEEEEeeeccCCCH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFD---------LKN-RKWHIQGTCALKGDGL  142 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~-~~~~~~~~Sa~~~~gi  142 (169)
                      +++|+....|+...++.. .++.|+++|+||+|+.+.....+.........         .+. ...+|+||||++|.||
T Consensus        86 ~~Sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi  164 (177)
T d1kmqa_          86 PDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGV  164 (177)
T ss_dssp             HHHHHHHHHTHHHHHHHH-STTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred             hHHHHHHHHHHHHHHHHh-CCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCCcCH
Confidence            999999887766665532 35799999999999865322111111111100         011 1247999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 030931          143 YEGLDWLASTLKE  155 (169)
Q Consensus       143 ~~~~~~l~~~~~~  155 (169)
                      +++|+.+++.+.+
T Consensus       165 ~e~F~~i~~~~l~  177 (177)
T d1kmqa_         165 REVFEMATRAALQ  177 (177)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999987753

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=2.9e-33  Score=188.26  Aligned_cols=150  Identities=17%  Similarity=0.253  Sum_probs=119.7

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+|+|||||+++|     .+.+.|+.+.+...  +..  ..+++++|||||++++..+++.++++++++|+|||++
T Consensus         9 ~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~   88 (169)
T d3raba_           9 LIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT   88 (169)
T ss_dssp             EEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECc
Confidence            36789999999999976     46667777765543  333  4588999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      +++++.....|+...... ...+.|+++++||+|+.+..  +.++.. .+    .+..+++|++|||++|.||+++|+++
T Consensus        89 ~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~~-~~----~~~~~~~~~e~Sak~g~gv~e~f~~l  162 (169)
T d3raba_          89 NEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGR-QL----ADHLGFEFFEASAKDNINVKQTFERL  162 (169)
T ss_dssp             CHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhhcc-cCCcceEEEEEeecccccccccchhhhH-HH----HHHcCCEEEEecCCCCcCHHHHHHHH
Confidence            999999998888766442 34589999999999986533  233322 12    13345679999999999999999999


Q ss_pred             HHHHHhh
Q 030931          150 ASTLKEM  156 (169)
Q Consensus       150 ~~~~~~~  156 (169)
                      ++.+.++
T Consensus       163 ~~~i~ek  169 (169)
T d3raba_         163 VDVICEK  169 (169)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhhC
Confidence            9988753

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.2e-33  Score=188.94  Aligned_cols=150  Identities=17%  Similarity=0.153  Sum_probs=121.8

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE-EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      |++..++|||||++||     .+.+.||.+..+.. +..  ..+.+++||++|++.+..++..++++++++++|||++++
T Consensus         9 lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~   88 (169)
T d1x1ra1           9 VVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDK   88 (169)
T ss_dssp             EECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEecccccc
Confidence            6789999999999986     55677888755433 333  578999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCC-CHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGD-GLYEGLDWLA  150 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~~~~l~  150 (169)
                      ++|..+..|+..+.+.....+.|++++|||+|+.+..  +.++..+ +    +...+++|++|||+++. ||+++|..++
T Consensus        89 ~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~-~----~~~~~~~~~e~Sak~~~~nV~~~F~~l~  163 (169)
T d1x1ra1          89 ASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE-M----ATKYNIPYIETSAKDPPLNVDKTFHDLV  163 (169)
T ss_dssp             HHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHH-H----HHHHTCCEEEEBCSSSCBSHHHHHHHHH
T ss_pred             hhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHH-H----HHHcCCEEEEEcCCCCCcCHHHHHHHHH
Confidence            9999999999998775445689999999999987643  3333222 1    12344569999999886 9999999999


Q ss_pred             HHHHhh
Q 030931          151 STLKEM  156 (169)
Q Consensus       151 ~~~~~~  156 (169)
                      +.+.++
T Consensus       164 ~~i~~~  169 (169)
T d1x1ra1         164 RVIRQQ  169 (169)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            988763

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-33  Score=189.66  Aligned_cols=152  Identities=13%  Similarity=0.153  Sum_probs=121.2

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +|++.+|+|||||++||     .+.+.||..... ..+..  ..+.+.+||++|++++..++..++++++++++|||+++
T Consensus        10 ~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   89 (173)
T d2fn4a1          10 VVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAIND   89 (173)
T ss_dssp             EEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTC
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeeeeeccccc
Confidence            36789999999999976     455566655332 33444  46889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+|+.+..|+..+.+.....+.|+++||||+|+....  ..++. ..+    ....+++|++|||++|.||+++|++++
T Consensus        90 ~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~-~~~----~~~~~~~~~e~Sak~g~gv~e~f~~l~  164 (173)
T d2fn4a1          90 RQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEA-SAF----GASHHVAYFEASAKLRLNVDEAFEQLV  164 (173)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHH-HHH----HHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             ccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhh-hHH----HHhcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            99999999999888765445689999999999986532  22222 222    123456799999999999999999999


Q ss_pred             HHHHhhh
Q 030931          151 STLKEMR  157 (169)
Q Consensus       151 ~~~~~~~  157 (169)
                      +.+.+++
T Consensus       165 ~~i~k~~  171 (173)
T d2fn4a1         165 RAVRKYQ  171 (173)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9987765

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.3e-34  Score=190.06  Aligned_cols=148  Identities=17%  Similarity=0.238  Sum_probs=119.9

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEEE--EE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKV--QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +|++.+|+|||||++||     .+.+.||++.+....  ..  ..+.+.+||++|++.+..++..++++++++++|||++
T Consensus         6 ~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~   85 (164)
T d1z2aa1           6 VVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTT   85 (164)
T ss_dssp             EEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEEEecc
Confidence            36789999999999976     567788888654443  33  4688999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++.+|+.+..|+.++.+..  ++.|+++||||+|+.+.  .+.++.. .+    .+..+++|++|||++|.||+++|+++
T Consensus        86 ~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~-~~----~~~~~~~~~e~Sak~g~~v~e~f~~l  158 (164)
T d1z2aa1          86 DRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAE-GL----AKRLKLRFYRTSVKEDLNVSEVFKYL  158 (164)
T ss_dssp             CHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHH-HH----HHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             chhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhH-HH----HHHcCCEEEEeccCCCcCHHHHHHHH
Confidence            9999999999999886533  57999999999998653  2233322 12    13345679999999999999999999


Q ss_pred             HHHHHh
Q 030931          150 ASTLKE  155 (169)
Q Consensus       150 ~~~~~~  155 (169)
                      ++.+.+
T Consensus       159 ~~~~lq  164 (164)
T d1z2aa1         159 AEKHLQ  164 (164)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            988753

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-33  Score=187.83  Aligned_cols=149  Identities=12%  Similarity=0.087  Sum_probs=121.8

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE-EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +|++.+|+|||||++||     .+.+.||++..+.. +..  ..+.+++||++|.+.+..++..++++++++++|||+++
T Consensus         8 ~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~   87 (167)
T d1xtqa1           8 AILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTS   87 (167)
T ss_dssp             EEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTC
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhhhcccch
Confidence            36789999999999976     56778888876532 333  56889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +++|+.+..|+..+.+.....+.|+++||||+|+...  ++.++.. .+    .+..+++|++|||++|.||+++|+.++
T Consensus        88 ~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~-~~----a~~~~~~~~e~Sak~~~~v~~~f~~li  162 (167)
T d1xtqa1          88 IKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGK-AL----AESWNAAFLESSAKENQTAVDVFRRII  162 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHH-HH----HHHHTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHH-HH----HHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            9999999999998876544568999999999998653  3333322 12    133456799999999999999999999


Q ss_pred             HHHH
Q 030931          151 STLK  154 (169)
Q Consensus       151 ~~~~  154 (169)
                      ..+.
T Consensus       163 ~~~~  166 (167)
T d1xtqa1         163 LEAE  166 (167)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8775

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-32  Score=186.00  Aligned_cols=154  Identities=16%  Similarity=0.166  Sum_probs=115.4

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE-EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +|++.+|+|||||++||     .+.+.||++..... +..  ..+++++||++|++.+..++..++++++++++|||+++
T Consensus        13 ~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~   92 (185)
T d2atxa1          13 VVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN   92 (185)
T ss_dssp             EEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTC
T ss_pred             EEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeeeccccch
Confidence            46789999999999975     56778888744333 222  56889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC---------CCCCC-ceeEEEEeeeccCCCH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL---------FDLKN-RKWHIQGTCALKGDGL  142 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~Sa~~~~gi  142 (169)
                      +++|+.+..|+...++.. .++.|+++|+||+|+.+.....+.......         ...+. ..+.|+||||++|.||
T Consensus        93 ~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv  171 (185)
T d2atxa1          93 PASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGL  171 (185)
T ss_dssp             HHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTH
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCCCCcCH
Confidence            999998877666665532 358999999999998753211110000000         00011 1246999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 030931          143 YEGLDWLASTLKE  155 (169)
Q Consensus       143 ~~~~~~l~~~~~~  155 (169)
                      +++|+.+++++..
T Consensus       172 ~e~F~~li~~il~  184 (185)
T d2atxa1         172 KTVFDEAIIAILT  184 (185)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999988753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.9e-33  Score=188.77  Aligned_cols=153  Identities=18%  Similarity=0.291  Sum_probs=122.6

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE------------CCEEEEEEEcCCCCCchhhHHhhccCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY------------KNVIFTVWDVGGQEKLRPLWRHYFNNT   61 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~------------~~~~~~i~D~~G~~~~~~~~~~~~~~~   61 (169)
                      +|++.+++|||||++||     .+.+.+|.+..+..  +..            ..+.+.+|||+|++.+..++..+++++
T Consensus         9 ~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~~~~~   88 (186)
T d2f7sa1           9 LALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDA   88 (186)
T ss_dssp             EEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTC
T ss_pred             EEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHHHhcC
Confidence            46789999999999976     45667776654432  222            247899999999999999999999999


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccC
Q 030931           62 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKG  139 (169)
Q Consensus        62 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  139 (169)
                      +++|+|||++++.+++.+..|+.++.+.......|+++|+||+|+.+.  .+.++... +    .+..+++|++|||++|
T Consensus        89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~-~----~~~~~~~~~e~Sak~~  163 (186)
T d2f7sa1          89 MGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARE-L----ADKYGIPYFETSAATG  163 (186)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCCEEEEBTTTT
T ss_pred             CEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHH-H----HHHcCCEEEEEeCCCC
Confidence            999999999999999999999998877666678999999999998653  23333221 1    1233467999999999


Q ss_pred             CCHHHHHHHHHHHHHhhhc
Q 030931          140 DGLYEGLDWLASTLKEMRA  158 (169)
Q Consensus       140 ~gi~~~~~~l~~~~~~~~~  158 (169)
                      +||+++|+++++.+.++..
T Consensus       164 ~~i~e~f~~l~~~i~~k~~  182 (186)
T d2f7sa1         164 QNVEKAVETLLDLIMKRME  182 (186)
T ss_dssp             BTHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            9999999999998887653

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.4e-33  Score=186.88  Aligned_cols=150  Identities=18%  Similarity=0.209  Sum_probs=118.6

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +|++.+++|||||+++|     .+.+.|+.+..+  ..+..  ..+++++|||||++.+..+++.++++++++++|||++
T Consensus         9 ~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~   88 (171)
T d2ew1a1           9 VLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDIT   88 (171)
T ss_dssp             EEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEeeecc
Confidence            36789999999999976     455666666544  33444  4588999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++.++....+|+..+.+. ...+.|+++|+||+|+.+..  +.++... +    .+..++++++|||++|+||+++|.++
T Consensus        89 ~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~~-~----~~~~~~~~~~~SAktg~gV~e~f~~l  162 (171)
T d2ew1a1          89 CEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEE-F----SEAQDMYYLETSAKESDNVEKLFLDL  162 (171)
T ss_dssp             CHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHH-H----HHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHHHH-H----HHhCCCEEEEEccCCCCCHHHHHHHH
Confidence            999999999998887653 23578999999999986532  2332221 2    12344569999999999999999999


Q ss_pred             HHHHHhh
Q 030931          150 ASTLKEM  156 (169)
Q Consensus       150 ~~~~~~~  156 (169)
                      +..+...
T Consensus       163 ~~~l~~~  169 (171)
T d2ew1a1         163 ACRLISE  169 (171)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9887654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.3e-32  Score=181.68  Aligned_cols=152  Identities=14%  Similarity=0.166  Sum_probs=119.1

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEE-EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV-EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +|++.+|+|||||++||     .+.+.||.+... ..+..  ..+.+.+||++|++.+...+..++++++++++|||+++
T Consensus         9 ~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   88 (171)
T d2erya1           9 VVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTD   88 (171)
T ss_dssp             EEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTC
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEeecccc
Confidence            36789999999999976     567778877443 23333  45889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +++|+.+..|+.++++.....+.|+++|+||+|+...  ...++... +    .+..+++|++|||++|.||+++|.+++
T Consensus        89 ~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1          89 RGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQ-L----ARQLKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             HHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHH-H----HHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             ccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHH-H----HHHcCCEEEEEcCCCCcCHHHHHHHHH
Confidence            9999999999988876555568999999999998654  23333322 2    133456899999999999999999999


Q ss_pred             HHHHhhh
Q 030931          151 STLKEMR  157 (169)
Q Consensus       151 ~~~~~~~  157 (169)
                      +.+.+.+
T Consensus       164 ~~i~k~~  170 (171)
T d2erya1         164 RVIRKFQ  170 (171)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            9886543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-33  Score=189.02  Aligned_cols=151  Identities=16%  Similarity=0.123  Sum_probs=119.0

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEEE-EE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKV-QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~-~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +|++.+|+|||||++||     .+.+.||++..+... ..  ..+.+.+||++|++.+...+..+++.++++++|||+++
T Consensus         6 ~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~   85 (171)
T d2erxa1           6 AVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITS   85 (171)
T ss_dssp             EEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTC
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEEeeccc
Confidence            36789999999999976     567889998665443 22  45789999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcC-CCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKD-PFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      +++|..+..|+..+.+. ....+.|+++||||+|+...  .+.++... +    .+..+++|++|||++|.||+++|+.+
T Consensus        86 ~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~-~----~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          86 RQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-L----ARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             HHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             ccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHH-H----HHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            99999999998877552 23467999999999998543  23333222 2    13345679999999999999999999


Q ss_pred             HHHHHhh
Q 030931          150 ASTLKEM  156 (169)
Q Consensus       150 ~~~~~~~  156 (169)
                      ++.+.++
T Consensus       161 ~~~~~~~  167 (171)
T d2erxa1         161 LNLEKRR  167 (171)
T ss_dssp             HHTCCSS
T ss_pred             HHHHHHh
Confidence            9865443

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.9e-33  Score=185.98  Aligned_cols=151  Identities=16%  Similarity=0.132  Sum_probs=118.4

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEEE-EE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKV-QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~-~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +|++.+|+|||||++||     .+.+.||++.++... ..  ..+.+++||++|++.+. .+..++++++++++|||+++
T Consensus         6 ~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~   84 (168)
T d2atva1           6 AIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITD   84 (168)
T ss_dssp             EEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTC
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeecccCC
Confidence            36789999999999976     578899999775442 22  45899999999998875 56778999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCC-CHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGD-GLYEGLDWL  149 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~~~~~l  149 (169)
                      +++|..+..|+.........++.|+++||||+|+.+.  ++.++... +    .+..+++|++|||++|. ||+++|.++
T Consensus        85 ~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~-~----a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          85 RGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK-L----ATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             HHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH-H----HHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             ccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHH-H----HHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            9999999887665544334468999999999998653  33333222 1    12345679999999998 499999999


Q ss_pred             HHHHHhhh
Q 030931          150 ASTLKEMR  157 (169)
Q Consensus       150 ~~~~~~~~  157 (169)
                      ++.+.+++
T Consensus       160 ~~~i~~~r  167 (168)
T d2atva1         160 CREVRRRR  167 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99887764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7e-32  Score=180.94  Aligned_cols=150  Identities=13%  Similarity=0.144  Sum_probs=121.6

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEEE-EE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKV-QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~-~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      |++.+++|||||++||     .+.+.||.+..+... ..  ..+.+.+||++|++.+...+..+++.++++++|||++++
T Consensus         8 viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~   87 (166)
T d1ctqa_           8 VVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT   87 (166)
T ss_dssp             EEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCH
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhcccccceeeccccc
Confidence            6789999999999986     566788888655432 22  578899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931           74 ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                      .+|+.+..|+..+.+....+++|+++|+||+|+.......+....+.    +..+++|++|||++|+||+++|+++++.+
T Consensus        88 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~e~Sak~g~gi~e~f~~i~~~i  163 (166)
T d1ctqa_          88 KSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA----RSYGIPYIETSAKTRQGVEDAFYTLVREI  163 (166)
T ss_dssp             HHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHH----HHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHH----HHhCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            99999999999887654446799999999999865432222222221    23445799999999999999999999987


Q ss_pred             Hh
Q 030931          154 KE  155 (169)
Q Consensus       154 ~~  155 (169)
                      .+
T Consensus       164 ~~  165 (166)
T d1ctqa_         164 RQ  165 (166)
T ss_dssp             HT
T ss_pred             Hh
Confidence            64

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.1e-33  Score=186.31  Aligned_cols=149  Identities=19%  Similarity=0.221  Sum_probs=114.2

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEEE--EE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKV--QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~--~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +|++.+|+|||||++||     .+.+.||.+......  ..  ..+.+++||++|++.+..++..++++++++++|||++
T Consensus         7 vlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~   86 (167)
T d1z08a1           7 VLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDIT   86 (167)
T ss_dssp             EEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEEEeCC
Confidence            36789999999999975     677888888655443  32  4699999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++++|+.+..|+..+... ...+.|++++|||+|+.+.  ++.++... +    .+..+++|++|||++|.||+++|.+|
T Consensus        87 ~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~-~----a~~~~~~~~e~Sak~~~~v~e~F~~l  160 (167)
T d1z08a1          87 DEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAES-Y----AESVGAKHYHTSAKQNKGIEELFLDL  160 (167)
T ss_dssp             CHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHH-H----HHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             chhHHHhhhhhhhhcccc-cccccceeeeccccccccccccchHHHHH-H----HHHcCCeEEEEecCCCcCHHHHHHHH
Confidence            999999999998876542 2357899999999998653  33333322 1    23345689999999999999999999


Q ss_pred             HHHHHh
Q 030931          150 ASTLKE  155 (169)
Q Consensus       150 ~~~~~~  155 (169)
                      ++.+.+
T Consensus       161 ~~~i~~  166 (167)
T d1z08a1         161 CKRMIE  166 (167)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-32  Score=183.62  Aligned_cols=148  Identities=16%  Similarity=0.234  Sum_probs=119.8

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+|+|||||++||     .+.+.|+.+........    ..+.+.+||++|++.+...+..+++.++++++|||++
T Consensus         4 ~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~   83 (164)
T d1yzqa1           4 VFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDIT   83 (164)
T ss_dssp             EEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEeeccc
Confidence            36789999999999976     56778888766554333    4689999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++.+|+.+..|+..+.+.. .++.|+++||||+|+.+..  ..++... +.    ...+++|++|||++|+||+++|++|
T Consensus        84 ~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~e~SAk~g~~v~e~f~~i  157 (164)
T d1yzqa1          84 NVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGER-KA----KELNVMFIETSAKAGYNVKQLFRRV  157 (164)
T ss_dssp             CHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHH-HH----HHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             cccchhhhHhhHHHHHHhc-CCCceEEEEecccchhhhhhhhHHHHHH-HH----HHcCCEEEEecCCCCcCHHHHHHHH
Confidence            9999999999998876532 3579999999999986432  2222221 11    2344679999999999999999999


Q ss_pred             HHHHH
Q 030931          150 ASTLK  154 (169)
Q Consensus       150 ~~~~~  154 (169)
                      ++++.
T Consensus       158 ~~~l~  162 (164)
T d1yzqa1         158 AAALP  162 (164)
T ss_dssp             HHHSC
T ss_pred             HHhhC
Confidence            98764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.6e-32  Score=184.32  Aligned_cols=153  Identities=20%  Similarity=0.239  Sum_probs=122.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      |++.+|+|||||++||     .+.+.||.+........    ....+.+||+||++++..++..+++.++++|+|||+++
T Consensus        10 lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~   89 (174)
T d2bmea1          10 VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS   89 (174)
T ss_dssp             EEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTC
T ss_pred             EECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEeccc
Confidence            6789999999999976     45667777766544332    56889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ++++..+..|+..+.+.. .++.|+++|+||+|+...... .+....+    .+..+++|++|||++|.||+++|+++++
T Consensus        90 ~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~e~Sak~~~gi~e~f~~l~~  164 (174)
T d2bmea1          90 RETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRF----AQENELMFLETSALTGENVEEAFVQCAR  164 (174)
T ss_dssp             HHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             chhHHHHhhhhccccccc-CCceEEEEEEecccccchhchhhhHHHHH----HHhCCCEEEEeeCCCCcCHHHHHHHHHH
Confidence            999999999988876533 358999999999998543221 1111222    1234568999999999999999999999


Q ss_pred             HHHhhhcc
Q 030931          152 TLKEMRAA  159 (169)
Q Consensus       152 ~~~~~~~~  159 (169)
                      .+.++..+
T Consensus       165 ~i~~~~~~  172 (174)
T d2bmea1         165 KILNKIES  172 (174)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhc
Confidence            98877543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4.7e-32  Score=182.94  Aligned_cols=151  Identities=17%  Similarity=0.272  Sum_probs=97.7

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+++|||||+++|     .+.+.||++..+  ..+..  ..+.+++|||||++.+..+++.++++++++|+|||++
T Consensus        10 ~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~   89 (173)
T d2fu5c1          10 LLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDIT   89 (173)
T ss_dssp             EEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECC
Confidence            36789999999999976     456667776544  34554  3588899999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH--hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP--MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      ++.++..+..|+..+... ...+.|+++|+||.|+......  ++.. .+    ....+++|++|||++|+||+++|+++
T Consensus        90 ~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~~-~~----~~~~~~~~~e~Sa~~g~gv~e~f~~l  163 (173)
T d2fu5c1          90 NEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGE-KL----ALDYGIKFMETSAKANINVENAFFTL  163 (173)
T ss_dssp             CHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHH-HH----HHHHTCEEEECCC---CCHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHhhhh-ccCCceEEEEEecccchhhcccHHHHHH-HH----HHhcCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999998887542 3467999999999998764322  2221 11    13455789999999999999999999


Q ss_pred             HHHHHhhh
Q 030931          150 ASTLKEMR  157 (169)
Q Consensus       150 ~~~~~~~~  157 (169)
                      ++.+.++.
T Consensus       164 ~~~i~~k~  171 (173)
T d2fu5c1         164 ARDIKAKM  171 (173)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99987764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-32  Score=182.65  Aligned_cols=147  Identities=18%  Similarity=0.271  Sum_probs=115.6

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +|++.+++|||||++||     .+.+.|+.+..+.  .+..  ..+++++||++|++.+..++..++++++++++|||++
T Consensus         8 vlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~   87 (166)
T d1z0fa1           8 IIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT   87 (166)
T ss_dssp             EEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccC
Confidence            36789999999999976     4445555554333  3333  4679999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      +.++|+....|+..+.+. .....|+++++||+|+....  ..++... +    .+..+++|++|||++|+||+++|+++
T Consensus        88 ~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~e~Saktg~~v~e~f~~i  161 (166)
T d1z0fa1          88 RRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQ-F----AEENGLLFLEASAKTGENVEDAFLEA  161 (166)
T ss_dssp             CHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHH-H----HHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999998877543 34578999999999985432  2222222 2    12345679999999999999999999


Q ss_pred             HHHH
Q 030931          150 ASTL  153 (169)
Q Consensus       150 ~~~~  153 (169)
                      ++.+
T Consensus       162 ~~~i  165 (166)
T d1z0fa1         162 AKKI  165 (166)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9876

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-32  Score=183.20  Aligned_cols=149  Identities=20%  Similarity=0.237  Sum_probs=120.5

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+|+|||||++||     .+.+.||.+..+.....    ..+.+.+||++|++.+..++..++++++++++|||.+
T Consensus        10 ~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~   89 (170)
T d1r2qa_          10 VLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIT   89 (170)
T ss_dssp             EEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEEeccc
Confidence            36789999999999976     56778888877655433    4688999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      +.++|+....|+..+.+. ..++.|+++|+||+|+...  .+.++. ..+.    ...+++|++|||++|.||+++|.+|
T Consensus        90 ~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~-~~~~----~~~~~~~~e~SAk~g~~V~e~f~~l  163 (170)
T d1r2qa_          90 NEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEA-QSYA----DDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             CHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHH-HHHH----HHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             hhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccccccHHHH-HHHH----HhcCCEEEEeeCCCCCCHHHHHHHH
Confidence            999999999998887553 2358999999999998653  222222 2221    2345689999999999999999999


Q ss_pred             HHHHHh
Q 030931          150 ASTLKE  155 (169)
Q Consensus       150 ~~~~~~  155 (169)
                      ++.+.+
T Consensus       164 ~~~i~~  169 (170)
T d1r2qa_         164 AKKLPK  169 (170)
T ss_dssp             HHTSCC
T ss_pred             HHHHhh
Confidence            886643

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.8e-31  Score=177.46  Aligned_cols=149  Identities=15%  Similarity=0.164  Sum_probs=119.2

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE-EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK-VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~-~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +|++.+|+|||||++||     .+.+.||++..... ...  ..+.+++||++|++.+..++..++++++++++|||+++
T Consensus         7 ~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~   86 (167)
T d1kaoa_           7 VVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVN   86 (167)
T ss_dssp             EEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeeeeeecc
Confidence            36789999999999976     56677888744332 233  56889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +++|..+..|+..+......++.|+++||||+|+.+..  ..++.. .+    .+..+++|++|||++|.||+++|++++
T Consensus        87 ~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~-~~----~~~~~~~~~e~Sak~g~~i~e~f~~i~  161 (167)
T d1kaoa_          87 QQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGR-AL----AEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHH-HH----HHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             hhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHH-HH----HHHcCCeEEEECCCCCcCHHHHHHHHH
Confidence            99999999999888764455689999999999986532  222211 11    122345699999999999999999999


Q ss_pred             HHHH
Q 030931          151 STLK  154 (169)
Q Consensus       151 ~~~~  154 (169)
                      +.+.
T Consensus       162 ~~i~  165 (167)
T d1kaoa_         162 RQMN  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            8775

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-30  Score=176.90  Aligned_cols=152  Identities=17%  Similarity=0.240  Sum_probs=122.4

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEE--EEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNV--EKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+++|||||+++|     .+.+.++.+...  ..+..  ..+++.+|||||++++..+++.++++++++++|||++
T Consensus        11 ~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~   90 (177)
T d1x3sa1          11 LIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVT   90 (177)
T ss_dssp             EEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECC
Confidence            36789999999999986     445555555433  33444  5688999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC-CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM-TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      ++.+++.+..|+.++.+.......|+++++||.|..... +..+... +    .+..+++|++|||++|+||+++|++++
T Consensus        91 ~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~-~----~~~~~~~~~e~Sa~tg~gv~e~f~~l~  165 (177)
T d1x3sa1          91 RRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLK-F----ARKHSMLFIEASAKTCDGVQCAFEELV  165 (177)
T ss_dssp             CHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHH-H----HHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             CccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHH-H----HHHCCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999998776666689999999999976532 2222222 2    133456799999999999999999999


Q ss_pred             HHHHhhh
Q 030931          151 STLKEMR  157 (169)
Q Consensus       151 ~~~~~~~  157 (169)
                      +.+.+.+
T Consensus       166 ~~l~~~p  172 (177)
T d1x3sa1         166 EKIIQTP  172 (177)
T ss_dssp             HHHHTSG
T ss_pred             HHHccCc
Confidence            9988765

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=7.2e-32  Score=181.03  Aligned_cols=147  Identities=16%  Similarity=0.143  Sum_probs=118.7

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      |++.+++|||||++||     .+.+.||.+........    ....+.+||++|++++..++..+++.++++|+|||+++
T Consensus         9 lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   88 (167)
T d1z0ja1           9 LLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK   88 (167)
T ss_dssp             EECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred             EECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEEEeeech
Confidence            6789999999999976     56778888866544322    46778899999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +++|+.+..|+....+.. ..+.|+++|+||+|+.+.  ...++..+ +    .+..+++|++|||++|.||+++|.+++
T Consensus        89 ~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~SAk~~~nV~e~f~~l~  162 (167)
T d1z0ja1          89 EETFSTLKNWVRELRQHG-PPSIVVAIAGNKCDLTDVREVMERDAKD-Y----ADSIHAIFVETSAKNAININELFIEIS  162 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTTCGGGCCSCHHHHHH-H----HHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             hhhhhhHHHhhhhhhhcc-CCcceEEEecccchhccccchhHHHHHH-H----HHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            999999999987775532 358999999999999653  23333222 2    133456799999999999999999999


Q ss_pred             HHHH
Q 030931          151 STLK  154 (169)
Q Consensus       151 ~~~~  154 (169)
                      +.++
T Consensus       163 ~~i~  166 (167)
T d1z0ja1         163 RRIP  166 (167)
T ss_dssp             HHCC
T ss_pred             HhCC
Confidence            8763

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.8e-32  Score=182.89  Aligned_cols=151  Identities=19%  Similarity=0.203  Sum_probs=118.3

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||++||     .+.+.||.+.++.  .+..  ..+.+++||++|++.+..++..++++++++++|||+++
T Consensus         8 vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   87 (170)
T d1ek0a_           8 LLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTK   87 (170)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC
T ss_pred             EECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEEEeCCc
Confidence            6789999999999976     5677888886554  4444  45899999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAST  152 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~  152 (169)
                      +.+|+.+..|+...... .....|+++++||+|+.+.....++........+++.+++|++|||++|.||+++|.++++.
T Consensus        88 ~~s~~~~~~~~~~~~~~-~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~~~  166 (170)
T d1ek0a_          88 PQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEK  166 (170)
T ss_dssp             HHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTT
T ss_pred             ccchhhhhhhhhhhccc-cccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHH
Confidence            99999999998776553 23578999999999985432211111111111224456789999999999999999999875


Q ss_pred             H
Q 030931          153 L  153 (169)
Q Consensus       153 ~  153 (169)
                      +
T Consensus       167 i  167 (170)
T d1ek0a_         167 I  167 (170)
T ss_dssp             S
T ss_pred             h
Confidence            4

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.8e-31  Score=181.80  Aligned_cols=153  Identities=16%  Similarity=0.163  Sum_probs=118.8

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEEE-EE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKV-QY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~-~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +|++.+|+|||||++||     .+.+.||++...... ..  ..+.+++||++|++++..++..++++++++++|||+++
T Consensus         7 vllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   86 (191)
T d2ngra_           7 VVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS   86 (191)
T ss_dssp             EEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecccccch
Confidence            46789999999999975     677889998655332 22  56889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--------------CHhHHHhhhCCCCCCCceeEEEEeeecc
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--------------TPMEVCEGLGLFDLKNRKWHIQGTCALK  138 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  138 (169)
                      +++|+.+..|+...+... .++.|+++|+||+|+.+..              +.++.. .+..   ...+.+|++|||++
T Consensus        87 ~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~---~~~~~~~~e~SAk~  161 (191)
T d2ngra_          87 PSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAE-KLAR---DLKAVKYVECSALT  161 (191)
T ss_dssp             HHHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH-HHHH---HTTCSCEEECCTTT
T ss_pred             HHHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccchhhhhhhhcccccccHHHHH-HHHH---HcCCCeEEEEeCCC
Confidence            999999987666655432 3579999999999986431              111111 1100   11235699999999


Q ss_pred             CCCHHHHHHHHHHHHHhhhc
Q 030931          139 GDGLYEGLDWLASTLKEMRA  158 (169)
Q Consensus       139 ~~gi~~~~~~l~~~~~~~~~  158 (169)
                      |.||+++|+.++..+.++..
T Consensus       162 ~~~V~e~f~~l~~~~~~~~~  181 (191)
T d2ngra_         162 QKGLKNVFDEAILAALEPPE  181 (191)
T ss_dssp             CTTHHHHHHHHHHHHTSCCS
T ss_pred             CcCHHHHHHHHHHHHhcCcC
Confidence            99999999999998877643

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.97  E-value=3.8e-30  Score=170.77  Aligned_cols=153  Identities=52%  Similarity=0.923  Sum_probs=131.3

Q ss_pred             CccccCCCCCceeeeeceee----eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931            1 MLRVKQPYCTSCTLVKFYLL----FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI   76 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~   76 (169)
                      +|++.+++|||||++++...    ..++........+...+.+.+||++|.+.+...+..+++.++++++++|.+++.++
T Consensus         4 vlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~   83 (160)
T d1r8sa_           4 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV   83 (160)
T ss_dssp             EEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGH
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecChHHH
Confidence            36789999999999998322    22333345566777999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931           77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                      .....|+.+++........|+++++||.|+.+.....++........++..++++++|||++|+||+++|+||++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_          84 NEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence            99999999988877677899999999999988877778777776666677788999999999999999999998763

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-31  Score=183.86  Aligned_cols=150  Identities=25%  Similarity=0.328  Sum_probs=120.2

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+++|||||+++|     ...+.||.+..+..  +..  ..+.+++|||||++++..+|..++++|+++|+|||++
T Consensus        10 vvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t   89 (194)
T d2bcgy1          10 LLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVT   89 (194)
T ss_dssp             EEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCc
Confidence            36789999999999976     56777888865443  433  5789999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      +++++.....|+..+.+. ...+.|+++|+||+|+.+...  .++.....     ...++.|+++||++|.||+++|+++
T Consensus        90 ~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~e~SAk~g~gi~e~f~~l  163 (194)
T d2bcgy1          90 DQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA-----DANKMPFLETSALDSTNVEDAFLTM  163 (194)
T ss_dssp             CHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHH-----HHTTCCEEECCTTTCTTHHHHHHHH
T ss_pred             chhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhh-----hccCcceEEEecCcCccHHHHHHHH
Confidence            999999999888777542 346899999999999976432  22221111     2234569999999999999999999


Q ss_pred             HHHHHhh
Q 030931          150 ASTLKEM  156 (169)
Q Consensus       150 ~~~~~~~  156 (169)
                      ++.+.+.
T Consensus       164 ~~~i~~~  170 (194)
T d2bcgy1         164 ARQIKES  170 (194)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.3e-30  Score=174.73  Aligned_cols=153  Identities=12%  Similarity=0.140  Sum_probs=106.9

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEE-----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEEC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQY-----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDS   70 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~   70 (169)
                      +|++.+++|||||+++|     .+.+.||.+........     ....+.+||++|++.+..++..+++.++++++|||+
T Consensus         6 ~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~   85 (175)
T d1ky3a_           6 IILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDV   85 (175)
T ss_dssp             EEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEET
T ss_pred             EEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEEEeec
Confidence            36789999999999987     45666777654433322     457899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHhc---CCCCCCCeEEEEEeCCCCCCC---CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           71 LDRERIGKAKQEFQAIIK---DPFMLNSVILVFANKQDMKGA---MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~---~~~~~~~piivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      +++.+|+.+..|+.++..   .....++|+++|+||+|+.+.   .+.++. +.+..   ....++|++|||++|.||++
T Consensus        86 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~-~~~~~---~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          86 TNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSA-QELAK---SLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             TCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHH-HHHHH---HTTSCCEEEEBTTTTBSHHH
T ss_pred             ccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHH-HHHHH---HcCCCeEEEEeCCCCcCHHH
Confidence            999999999999888754   233457899999999998653   222222 22210   11124599999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030931          145 GLDWLASTLKEMR  157 (169)
Q Consensus       145 ~~~~l~~~~~~~~  157 (169)
                      +|+++++.+.+++
T Consensus       162 ~f~~l~~~~l~~~  174 (175)
T d1ky3a_         162 AFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999887765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5e-31  Score=176.70  Aligned_cols=151  Identities=26%  Similarity=0.383  Sum_probs=116.0

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+++|||||+++|     .+.+.||.+.++.  .+..  ..+.+.+|||||++.+..++..++++++++++|||++
T Consensus         6 ~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~   85 (166)
T d1g16a_           6 LLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDIT   85 (166)
T ss_dssp             EEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECC
Confidence            36789999999999975     5667888886554  3444  4678889999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLAS  151 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  151 (169)
                      ++++++.+..|+....... ....|+++++||.|+.+.....+....+.    ...+++|++|||++|+||+++|+++++
T Consensus        86 ~~~s~~~~~~~~~~~~~~~-~~~~~~i~~~~k~d~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          86 DERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALA----KELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             CHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHH----HHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             CccCHHHHHhhhhhhhccc-cCcceeeeecchhhhhhhhhhHHHHHHHH----HhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            9999999988877765532 35789999999999876544333333332    234567999999999999999999999


Q ss_pred             HHHhh
Q 030931          152 TLKEM  156 (169)
Q Consensus       152 ~~~~~  156 (169)
                      .+.++
T Consensus       161 ~i~~k  165 (166)
T d1g16a_         161 LIQEK  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            88764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-30  Score=174.90  Aligned_cols=152  Identities=18%  Similarity=0.280  Sum_probs=117.4

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEE--EEEEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFN--VEKVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~--~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      ++++.+++|||||++||     ...+.++.+..  ...+..  ..+.+.+||++|++++..++..++++++++|+|||.+
T Consensus         8 ~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~   87 (175)
T d2f9la1           8 VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIA   87 (175)
T ss_dssp             EEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECC
Confidence            36789999999999986     45555555533  333444  4578999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC-HhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT-PMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      ++++|.....|+..+.+.. .+++|+++||||+|+.+... ..+......    ...+.+|++|||++|+|++++|++++
T Consensus        88 ~~~S~~~~~~~~~~i~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~g~~i~e~f~~l~  162 (175)
T d2f9la1          88 KHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFA----EKNNLSFIETSALDSTNVEEAFKNIL  162 (175)
T ss_dssp             CHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHH----HHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             CcccchhHHHHHHHHHHhc-CCCCcEEEEEeeecccccccchHHHHHHhh----cccCceEEEEecCCCcCHHHHHHHHH
Confidence            9999999999998886643 25799999999999875322 111111111    23346799999999999999999999


Q ss_pred             HHHHhhh
Q 030931          151 STLKEMR  157 (169)
Q Consensus       151 ~~~~~~~  157 (169)
                      +.+.+..
T Consensus       163 ~~i~~~~  169 (175)
T d2f9la1         163 TEIYRIV  169 (175)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9887654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.3e-31  Score=179.68  Aligned_cols=155  Identities=17%  Similarity=0.190  Sum_probs=116.6

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EE--EECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KV--QYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +|++.+|+|||||++||     .+.+.||++.... .+  +...+++.+||++|++.+..++..++++++++++|||+++
T Consensus         9 vviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   88 (183)
T d1mh1a_           9 VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVS   88 (183)
T ss_dssp             EEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeeeeeccch
Confidence            47889999999999975     6778888885433 23  3367889999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC----------CCceeEEEEeeeccCCCH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL----------KNRKWHIQGTCALKGDGL  142 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~gi  142 (169)
                      +++|+.+..|+....+. ...+.|+++|+||+|+.+.....+-.........          ....++|+||||++|.||
T Consensus        89 ~~sf~~i~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V  167 (183)
T d1mh1a_          89 PASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL  167 (183)
T ss_dssp             HHHHHHHHHTHHHHHHH-HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTH
T ss_pred             HHHHHHHHHHHHHHHHH-hCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCCCCcCH
Confidence            99999998755555442 2357999999999998543211110000000000          112367999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 030931          143 YEGLDWLASTLKEM  156 (169)
Q Consensus       143 ~~~~~~l~~~~~~~  156 (169)
                      +++|+++++.+.++
T Consensus       168 ~e~F~~l~~~il~p  181 (183)
T d1mh1a_         168 KTVFDEAIRAVLCP  181 (183)
T ss_dssp             HHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHcCC
Confidence            99999999987644

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3e-31  Score=178.48  Aligned_cols=147  Identities=20%  Similarity=0.297  Sum_probs=108.5

Q ss_pred             ccccCCCCCceeeeec------eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            2 LRVKQPYCTSCTLVKF------YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f------~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +++.+++|||||+++|      ...+.++.+.++..  +..  ..+++++|||+|++++..++..++++++++++|||++
T Consensus        11 vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~   90 (170)
T d2g6ba1          11 LVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVT   90 (170)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETT
T ss_pred             EECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEEecCC
Confidence            6789999999999987      23345566655554  333  3578999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      +++++..+..|+....+.. ....|+++|+||+|+.+..  +.++... +    .+..+++|++|||++|.||+++|+++
T Consensus        91 ~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~~~~~~v~~~~~~~-~----~~~~~~~~~e~Sak~g~gi~e~f~~l  164 (170)
T d2g6ba1          91 NKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEK-L----AKEYGLPFMETSAKTGLNVDLAFTAI  164 (170)
T ss_dssp             CHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHH-H----HHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhcc-CCCceEEEEEeeechhhcccccHHHHHH-H----HHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            9999999999988776533 2578999999999987642  2222221 1    12345679999999999999999999


Q ss_pred             HHHHH
Q 030931          150 ASTLK  154 (169)
Q Consensus       150 ~~~~~  154 (169)
                      ++.+.
T Consensus       165 ~~~i~  169 (170)
T d2g6ba1         165 AKELK  169 (170)
T ss_dssp             HHHHH
T ss_pred             HHHcC
Confidence            98875

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-31  Score=179.99  Aligned_cols=152  Identities=21%  Similarity=0.288  Sum_probs=116.5

Q ss_pred             ccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            2 LRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +++.+|+|||||++||     .+.+.|+.+.....  ...  ..+.+.+||++|++.+..+++.+++.+|++|+|||+++
T Consensus         8 vvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~   87 (173)
T d2a5ja1           8 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR   87 (173)
T ss_dssp             EESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTC
T ss_pred             EECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEEeecC
Confidence            6789999999999986     34455555533322  222  46899999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCC--CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHH
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAM--TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLA  150 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~  150 (169)
                      +.+|+.+.+|+..+.+. ..+++|+++|+||+|+....  ..++ ...+    ....+++|++|||++|.||+++|.+++
T Consensus        88 ~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~-~~~~----a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          88 RETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREE-GEAF----AREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             HHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHH-HHHH----HHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             hHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHH-HHHH----HHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999887653 23589999999999985432  2222 2222    123456799999999999999999999


Q ss_pred             HHHHhhhcc
Q 030931          151 STLKEMRAA  159 (169)
Q Consensus       151 ~~~~~~~~~  159 (169)
                      +.+.++.++
T Consensus       162 ~~i~~~~~~  170 (173)
T d2a5ja1         162 KEIYRKIQQ  170 (173)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            998876544

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=1.9e-30  Score=176.55  Aligned_cols=154  Identities=12%  Similarity=0.141  Sum_probs=123.1

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEEEEE----CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEKVQY----KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +|++.+++|||||+++|     ...+.||++.+......    ..+.+.+||++|+..+...+..++..++++++|||.+
T Consensus         6 ~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~   85 (184)
T d1vg8a_           6 IILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVT   85 (184)
T ss_dssp             EEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETT
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEeeccc
Confidence            36789999999999965     67778898877655444    5688999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhcC---CCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIKD---PFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  148 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~---~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  148 (169)
                      +..++..+..|+.++.+.   ....++|+++|+||+|+.+.....+....+..   ...+++|++|||++|.||+++|++
T Consensus        86 ~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~e~Sak~~~gI~e~f~~  162 (184)
T d1vg8a_          86 APNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY---SKNNIPYFETSAKEAINVEQAFQT  162 (184)
T ss_dssp             CHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH---HTTSCCEEECBTTTTBSHHHHHHH
T ss_pred             chhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHH---HhcCCeEEEEcCCCCcCHHHHHHH
Confidence            999999999998877552   23346899999999998764332222222211   233467999999999999999999


Q ss_pred             HHHHHHhhh
Q 030931          149 LASTLKEMR  157 (169)
Q Consensus       149 l~~~~~~~~  157 (169)
                      +++.+.+++
T Consensus       163 l~~~i~~~~  171 (184)
T d1vg8a_         163 IARNALKQE  171 (184)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            999887754

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.2e-31  Score=179.54  Aligned_cols=150  Identities=15%  Similarity=0.071  Sum_probs=112.2

Q ss_pred             CccccCCCCCceeeeece------eeeeeeeeEEE--EEEEE--CCEEEEEEEcCC---CCCchhhHHhhccCCCEEEEE
Q 030931            1 MLRVKQPYCTSCTLVKFY------LLFLLLVRFNV--EKVQY--KNVIFTVWDVGG---QEKLRPLWRHYFNNTDGLIYV   67 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~------~~~~~t~~~~~--~~~~~--~~~~~~i~D~~G---~~~~~~~~~~~~~~~~~ii~v   67 (169)
                      +|++.+++|||||++||.      ....+|.+.+.  ..+..  ..+.+.+||+++   ++++  ++..+++++|++|+|
T Consensus         7 ~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~~ilv   84 (172)
T d2g3ya1           7 VLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIV   84 (172)
T ss_dssp             EEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSEEEEE
T ss_pred             EEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccceeeee
Confidence            367899999999999872      23445555432  33333  467788999764   4433  567789999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931           68 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        68 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      ||++++.+++.+.+|+..+......+++|+++|+||+|+.+.  .+.++. ..+    ....+++|++|||++|.||+++
T Consensus        85 fd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~-~~~----a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          85 YSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEG-RAC----AVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHH-HHH----HHHHTCEEEECBTTTTBSHHHH
T ss_pred             ecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHH-HHH----HHHcCCeEEEEeCCCCcCHHHH
Confidence            999999999999999998877655678999999999998653  333332 112    1334567999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 030931          146 LDWLASTLKEMR  157 (169)
Q Consensus       146 ~~~l~~~~~~~~  157 (169)
                      |+++++.+..++
T Consensus       160 f~~l~~~i~~rr  171 (172)
T d2g3ya1         160 FEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcc
Confidence            999999887654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.4e-29  Score=169.65  Aligned_cols=151  Identities=13%  Similarity=0.161  Sum_probs=115.9

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEEE--EEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVEK--VQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~   71 (169)
                      +|++.+++|||||++||     .+.+.+|.+.....  ...  ..+.+.+||++|+......+..++..+++++++||.+
T Consensus        10 ~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~   89 (174)
T d1wmsa_          10 ILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVD   89 (174)
T ss_dssp             EEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETT
T ss_pred             EEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEEEeee
Confidence            36789999999999976     55677787755433  222  3688899999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhc---CCCCCCCeEEEEEeCCCCCCC-CCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHH
Q 030931           72 DRERIGKAKQEFQAIIK---DPFMLNSVILVFANKQDMKGA-MTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus        72 ~~~~~~~~~~~~~~~~~---~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                      ++.+++.+..|++++.+   ....++.|+++||||+|+.+. .+.++..+...    +...++|++|||++|+||+++|+
T Consensus        90 ~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~----~~~~~~~~e~Sak~~~gI~e~f~  165 (174)
T d1wmsa_          90 DSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCR----DNGDYPYFETSAKDATNVAAAFE  165 (174)
T ss_dssp             CHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHH----HTTCCCEEECCTTTCTTHHHHHH
T ss_pred             cccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHH----HcCCCeEEEEcCCCCcCHHHHHH
Confidence            99999999999877654   334457999999999999653 33444332211    12235699999999999999999


Q ss_pred             HHHHHHHh
Q 030931          148 WLASTLKE  155 (169)
Q Consensus       148 ~l~~~~~~  155 (169)
                      ++++.+..
T Consensus       166 ~l~~~il~  173 (174)
T d1wmsa_         166 EAVRRVLA  173 (174)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99988753

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.8e-30  Score=174.42  Aligned_cols=149  Identities=12%  Similarity=0.163  Sum_probs=115.1

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE-EEE--ECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE-KVQ--YKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~-~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      +|++.+|+|||||++||     .+.+.||++.... .+.  ...+.+++||++|++.+...++.++++++++++|||+++
T Consensus         6 vliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   85 (179)
T d1m7ba_           6 VVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR   85 (179)
T ss_dssp             EEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheeeeccc
Confidence            36789999999999976     6677888874433 233  267899999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--------------CCHhHHHhhhCCCCCCC-ceeEEEEeeec
Q 030931           73 RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--------------MTPMEVCEGLGLFDLKN-RKWHIQGTCAL  137 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~  137 (169)
                      +++|+.+..|+...+... .++.|+++||||+|+...              ++.++... +    .+. ....|+||||+
T Consensus        86 ~~Sf~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~-~----a~~~~~~~y~E~SAk  159 (179)
T d1m7ba_          86 PETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-M----AKQIGAATYIECSAL  159 (179)
T ss_dssp             HHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-H----HHHHTCSEEEECBTT
T ss_pred             CCCHHHHHHHHHHHHhcc-CCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHH-H----HHHhCCCeEEEEeCC
Confidence            999999988766655422 258999999999998532              11121111 1    011 12469999999


Q ss_pred             cCC-CHHHHHHHHHHHHHh
Q 030931          138 KGD-GLYEGLDWLASTLKE  155 (169)
Q Consensus       138 ~~~-gi~~~~~~l~~~~~~  155 (169)
                      +|. |++++|+.++..+.+
T Consensus       160 ~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         160 QSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             TBHHHHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            998 599999999998865

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.96  E-value=2.4e-28  Score=164.82  Aligned_cols=153  Identities=39%  Similarity=0.669  Sum_probs=128.7

Q ss_pred             CccccCCCCCceeeeecee----eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931            1 MLRVKQPYCTSCTLVKFYL----LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI   76 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~----~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~   76 (169)
                      +|++.+|+|||||++|+..    ...++.+............+.+||++|++.....+..++..++++++++|.++..++
T Consensus        19 ~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~   98 (177)
T d1zj6a1          19 IIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERI   98 (177)
T ss_dssp             EEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTH
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecceEEEEeccccccccccchhhhhccceeeeeecccccccch
Confidence            3678999999999998732    344555556667777899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931           77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                      .....+.............|+++|+||+|+.......++.+.+.......++++++++||++|+|++++|+||++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1          99 SVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            98888777776666667899999999999988878888888887777777889999999999999999999999876

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-28  Score=165.84  Aligned_cols=147  Identities=10%  Similarity=0.089  Sum_probs=109.3

Q ss_pred             ccccCCCCCceeeeece----eeeeeeeeEEEE-EEEE--CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh
Q 030931            2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVE-KVQY--KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE   74 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~   74 (169)
                      +++.+++|||||+++|.    +.+.+|.+..+. .+..  ..+.+.+|||+|+..+     .+++++|++|+|||+++++
T Consensus        10 vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilVfd~~~~~   84 (175)
T d2bmja1          10 VLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDEN   84 (175)
T ss_dssp             EECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEEEETTCHH
T ss_pred             EECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEEEeecccch
Confidence            67899999999999872    234455554443 2343  5688999999999764     3788999999999999999


Q ss_pred             hHHHHHHHHHHHhc--CCCCCCCeEEEEEeCCCCCCCC----CHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHH
Q 030931           75 RIGKAKQEFQAIIK--DPFMLNSVILVFANKQDMKGAM----TPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDW  148 (169)
Q Consensus        75 ~~~~~~~~~~~~~~--~~~~~~~piivv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~  148 (169)
                      +|+.+..|+..+..  .....+.|+++|+||.|+....    +..+... +.   ....+++|++|||++|.||+++|..
T Consensus        85 Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~-~~---~~~~~~~~~e~SAk~~~~v~~~F~~  160 (175)
T d2bmja1          85 SFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARA-LC---ADMKRCSYYETCATYGLNVDRVFQE  160 (175)
T ss_dssp             HHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHH-HH---HTSTTEEEEEEBTTTTBTHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHH-HH---HHhCCCeEEEeCCCCCcCHHHHHHH
Confidence            99999988877643  2334578999999999975421    2222222 21   1234568999999999999999999


Q ss_pred             HHHHHHhhh
Q 030931          149 LASTLKEMR  157 (169)
Q Consensus       149 l~~~~~~~~  157 (169)
                      +++.+...+
T Consensus       161 l~~~i~~~~  169 (175)
T d2bmja1         161 VAQKVVTLR  169 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999887765

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=9.9e-30  Score=170.08  Aligned_cols=145  Identities=16%  Similarity=0.237  Sum_probs=111.9

Q ss_pred             CccccCCCCCceeeeec-----eeeeeeeeeEEEE--EEEE--CCEEEEEEEcCCCCCchh-hHHhhccCCCEEEEEEEC
Q 030931            1 MLRVKQPYCTSCTLVKF-----YLLFLLLVRFNVE--KVQY--KNVIFTVWDVGGQEKLRP-LWRHYFNNTDGLIYVVDS   70 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-----~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~-~~~~~~~~~~~ii~v~d~   70 (169)
                      +|++.+|+|||||++||     .+.+.+|.+....  ....  +...+.+||++|.+.+.. .++.+++++|++|+|||+
T Consensus         6 ~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~   85 (165)
T d1z06a1           6 IVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDM   85 (165)
T ss_dssp             EEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEET
T ss_pred             EEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEEEEEe
Confidence            36789999999999976     5566677664432  3333  678899999999877654 577899999999999999


Q ss_pred             CChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC--CCHhHHHhhhCCCCCCCceeEEEEeeecc---CCCHHHH
Q 030931           71 LDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA--MTPMEVCEGLGLFDLKNRKWHIQGTCALK---GDGLYEG  145 (169)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~~  145 (169)
                      +++++|+.+..|+.++.+....++.|+++||||+|+.+.  ++.++... +.    +..+++|++|||++   ++||+++
T Consensus        86 ~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          86 TNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK-FA----DTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             TCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH-HH----HHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             ehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHH-HH----HHCCCEEEEEecccCCcCcCHHHH
Confidence            999999999999999877555578999999999998653  33333222 21    23345699999986   5699999


Q ss_pred             HHHHH
Q 030931          146 LDWLA  150 (169)
Q Consensus       146 ~~~l~  150 (169)
                      |.+|+
T Consensus       161 F~~lA  165 (165)
T d1z06a1         161 FMTLA  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98873

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.95  E-value=7e-27  Score=155.93  Aligned_cols=156  Identities=45%  Similarity=0.772  Sum_probs=135.1

Q ss_pred             CccccCCCCCceeeeec----eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931            1 MLRVKQPYCTSCTLVKF----YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI   76 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f----~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~   76 (169)
                      ++++.+++|||||+++|    .....||.+........+.+.+.+||.+|.+.....+...+..++++++++|+.+..++
T Consensus         9 ~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (169)
T d1upta_           9 LILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRI   88 (169)
T ss_dssp             EEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTH
T ss_pred             EEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhhhcchh
Confidence            36789999999999987    23445677777788888999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931           77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      .....++............|+++++||.|+.+.....++...+.......+.++|++|||++|+||+++|++|.+.+.++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~~k  168 (169)
T d1upta_          89 GISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             hhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            88888777776666667899999999999988877778887777666677889999999999999999999999988654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=3.3e-28  Score=166.26  Aligned_cols=156  Identities=19%  Similarity=0.281  Sum_probs=122.6

Q ss_pred             CccccCCCCCceeeeeceeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH----
Q 030931            1 MLRVKQPYCTSCTLVKFYLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI----   76 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~----   76 (169)
                      +|+|.+|+|||||++||.....||.++....++...+++++||++|+++++..|..+++.++++++|+|+++..++    
T Consensus         6 vllG~~~vGKTsl~~r~~~~~~~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~   85 (195)
T d1svsa1           6 LLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED   85 (195)
T ss_dssp             EEECSTTSSHHHHHHHHHHHHSCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSC
T ss_pred             EEECCCCCCHHHHHHHHhhCCCCCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccchHHHHh
Confidence            4678999999999999988889999999999999999999999999999999999999999999999999887754    


Q ss_pred             ------HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC-----------------CCCHhHH----Hhhh-CC-CCCCCc
Q 030931           77 ------GKAKQEFQAIIKDPFMLNSVILVFANKQDMKG-----------------AMTPMEV----CEGL-GL-FDLKNR  127 (169)
Q Consensus        77 ------~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~-----------------~~~~~~~----~~~~-~~-~~~~~~  127 (169)
                            .....++..++......+.|+++++||+|+..                 .....+.    ...+ .. .....+
T Consensus        86 ~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  165 (195)
T d1svsa1          86 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTK  165 (195)
T ss_dssp             TTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTC
T ss_pred             hhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCC
Confidence                  33444555666666667899999999998521                 0111111    1111 11 112356


Q ss_pred             eeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          128 KWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       128 ~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      .+.+++|||++++||+++|+.+.+.+.+.
T Consensus       166 ~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         166 EIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence            77889999999999999999998877653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=5.9e-27  Score=155.56  Aligned_cols=151  Identities=23%  Similarity=0.425  Sum_probs=130.7

Q ss_pred             CccccCCCCCceeeeece----eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhH
Q 030931            1 MLRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI   76 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~   76 (169)
                      +|++.+++|||||++++.    ..+.||.+.+............+||++|...+...+..+++.++++++++|.++...+
T Consensus         4 ~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   83 (166)
T d2qtvb1           4 LFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERF   83 (166)
T ss_dssp             EEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGH
T ss_pred             EEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchhhh
Confidence            367899999999999873    3567888888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCC-------CCceeEEEEeeeccCCCHHHHHHHH
Q 030931           77 GKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDL-------KNRKWHIQGTCALKGDGLYEGLDWL  149 (169)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Sa~~~~gi~~~~~~l  149 (169)
                      .....|+..........+.|+++++||.|+.......++.+.+.....       ..+.+++++|||++|+|++++|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l  163 (166)
T d2qtvb1          84 DEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL  163 (166)
T ss_dssp             HHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHH
T ss_pred             hhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHH
Confidence            998888888877777788999999999999887777777766654322       2456789999999999999999998


Q ss_pred             HH
Q 030931          150 AS  151 (169)
Q Consensus       150 ~~  151 (169)
                      .+
T Consensus       164 ~~  165 (166)
T d2qtvb1         164 SQ  165 (166)
T ss_dssp             TT
T ss_pred             hC
Confidence            64

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.3e-27  Score=163.94  Aligned_cols=157  Identities=21%  Similarity=0.273  Sum_probs=122.4

Q ss_pred             CccccCCCCCceeeeec---eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh---
Q 030931            1 MLRVKQPYCTSCTLVKF---YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---   74 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f---~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---   74 (169)
                      +|+|.+|+|||||++||   ...+.||+|+++..+....+.+++||++|++.++..|..++++++++++++|.++..   
T Consensus         6 v~lG~~~vGKTsll~r~~~~~~~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   85 (200)
T d2bcjq2           6 LLLGTGESGKSTFIKQMRIIHGSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVL   85 (200)
T ss_dssp             EEEESTTSSHHHHHHHHHHHTSSCCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBC
T ss_pred             EEECCCCCCHHHHHHHHhCCCCCCCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeeccchhhhh
Confidence            47889999999999988   456889999999999999999999999999999999999999999999999998754   


Q ss_pred             -------hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC------------------CCHhH----H-HhhhCCCCC
Q 030931           75 -------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA------------------MTPME----V-CEGLGLFDL  124 (169)
Q Consensus        75 -------~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~------------------~~~~~----~-~~~~~~~~~  124 (169)
                             .+.....++..++......+.|+++++||+|+...                  .+...    + .........
T Consensus        86 ~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~  165 (200)
T d2bcjq2          86 VESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPD  165 (200)
T ss_dssp             SSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSC
T ss_pred             hhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhccc
Confidence                   23444455555566556678999999999996321                  01111    0 111122223


Q ss_pred             CCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          125 KNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       125 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      ..+.+.+++|||++|+||.++|+.+.+.+.+..
T Consensus       166 ~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         166 SDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             TTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            456677899999999999999999998887654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.9e-26  Score=158.16  Aligned_cols=157  Identities=20%  Similarity=0.227  Sum_probs=117.3

Q ss_pred             CccccCCCCCceeeeec--eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh----
Q 030931            1 MLRVKQPYCTSCTLVKF--YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE----   74 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f--~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~----   74 (169)
                      +|+|.+|+|||||++||  .+.+.||+|+....++.+..++++||++|++.++..|..+++.++++++++|.++..    
T Consensus         6 vllG~~~vGKTsll~r~~f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (200)
T d1zcba2           6 LLLGAGESGKSTFLKQMRIIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLM   85 (200)
T ss_dssp             EEECSTTSSHHHHHHHHHHHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEET
T ss_pred             EEECCCCCCHHHHHHHHhcCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcCCcceeee
Confidence            36789999999999986  678899999999999999999999999999999999999999999999999998643    


Q ss_pred             ------hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC------------------CCHhH----HHhhhCC--CCC
Q 030931           75 ------RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA------------------MTPME----VCEGLGL--FDL  124 (169)
Q Consensus        75 ------~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~------------------~~~~~----~~~~~~~--~~~  124 (169)
                            ++.....++..+++.....+.|+++++||+|+.+.                  .+.+.    +.+.+..  ...
T Consensus        86 ~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~  165 (200)
T d1zcba2          86 EDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQ  165 (200)
T ss_dssp             TEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSC
T ss_pred             ecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCC
Confidence                  46677778888888777789999999999997321                  01111    1111111  111


Q ss_pred             CCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          125 KNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       125 ~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                      ..+.+.+++|||++++||+++|+.+.+.+.+..
T Consensus       166 ~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         166 QQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             C--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence            344566788999999999999999988776643

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.93  E-value=9.4e-26  Score=152.57  Aligned_cols=152  Identities=25%  Similarity=0.452  Sum_probs=122.3

Q ss_pred             ccccCCCCCceeeeeceee----eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH
Q 030931            2 LRVKQPYCTSCTLVKFYLL----FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG   77 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~----~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~   77 (169)
                      |++.+|+|||||++++...    ..|+.+.+...+..+...+..||+.|+..+...+..+.+..+++++++|.++...+.
T Consensus        18 lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~   97 (186)
T d1f6ba_          18 FLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLL   97 (186)
T ss_dssp             EEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHH
T ss_pred             EECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeeeeccCccchH
Confidence            5679999999999998433    357777777888889999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCC------------CCCCceeEEEEeeeccCCCHHHH
Q 030931           78 KAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLF------------DLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      ....++..........+.|+++++||.|+.......++.+.+...            .....++++++|||++|+|++++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~  177 (186)
T d1f6ba_          98 ESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG  177 (186)
T ss_dssp             HHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHH
T ss_pred             HHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHH
Confidence            888777777666666789999999999998877776666555432            11334578999999999999999


Q ss_pred             HHHHHHHH
Q 030931          146 LDWLASTL  153 (169)
Q Consensus       146 ~~~l~~~~  153 (169)
                      |+||++++
T Consensus       178 ~~~l~~~i  185 (186)
T d1f6ba_         178 FRWMAQYI  185 (186)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHhh
Confidence            99998754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.8e-25  Score=155.94  Aligned_cols=157  Identities=22%  Similarity=0.281  Sum_probs=124.1

Q ss_pred             CccccCCCCCceeeeec-eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCCh------
Q 030931            1 MLRVKQPYCTSCTLVKF-YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDR------   73 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~------   73 (169)
                      +|+|.+|+|||||++|| .....||+|+....+..+++++++||++|++.++..|..++++++++++|+|+++.      
T Consensus        10 lllG~~~vGKTsll~~~~~~~~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~   89 (221)
T d1azta2          10 LLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIRE   89 (221)
T ss_dssp             EEECSTTSSHHHHHHHHHHHHCCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTT
T ss_pred             EEECCCCCCHHHHHHHHhcCCcCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEcccccccccc
Confidence            36789999999999998 56778999999999999999999999999999999999999999999999999853      


Q ss_pred             ----hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC------CCHh------------------------------
Q 030931           74 ----ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA------MTPM------------------------------  113 (169)
Q Consensus        74 ----~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~------~~~~------------------------------  113 (169)
                          .++.+...++..++......+.|+++++||+|+.+.      ....                              
T Consensus        90 ~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~  169 (221)
T d1azta2          90 DNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKY  169 (221)
T ss_dssp             TSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHH
Confidence                345666677888888777789999999999997421      1100                              


Q ss_pred             ----HHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhhh
Q 030931          114 ----EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEMR  157 (169)
Q Consensus       114 ----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~~  157 (169)
                          ...+.........+.+..++|||.++.||..+|+.+.+.|.+..
T Consensus       170 ~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~~  217 (221)
T d1azta2         170 FIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  217 (221)
T ss_dssp             HHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHHH
Confidence                00111111112334566789999999999999999888777653

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=6.6e-24  Score=143.18  Aligned_cols=146  Identities=15%  Similarity=0.007  Sum_probs=100.7

Q ss_pred             ccccCCCCCceeeeecee--------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhH--------HhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYL--------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLW--------RHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~--------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~~~~~~ii   65 (169)
                      |++.+++|||||++++..        ....|...........+..+.+|||||.......+        ..+++.||+++
T Consensus        10 lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il   89 (178)
T d1wf3a1          10 IVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVV   89 (178)
T ss_dssp             EECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhccccccccccccccee
Confidence            678999999999998732        23334445556677788999999999986643332        34567899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      +|+|+++.....  ..++.+.++.. ..+.|+++|+||+|+.+.  .++..+.+...   .....++++||++|.|++++
T Consensus        90 ~v~D~~~~~~~~--~~~i~~~l~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~~~---~~~~~~~~iSA~~~~gi~~L  161 (178)
T d1wf3a1          90 WVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKY--PEEAMKAYHEL---LPEAEPRMLSALDERQVAEL  161 (178)
T ss_dssp             EEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSS--HHHHHHHHHHT---STTSEEEECCTTCHHHHHHH
T ss_pred             eeechhhhhccc--ccchhhheecc-ccchhhhhhhcccccccC--HHHHHHHHHhh---cccCceEEEecCCCCCHHHH
Confidence            999997754433  23333444322 246899999999998643  23332222111   11235889999999999999


Q ss_pred             HHHHHHHHHh
Q 030931          146 LDWLASTLKE  155 (169)
Q Consensus       146 ~~~l~~~~~~  155 (169)
                      ++++.+.+++
T Consensus       162 ~~~i~~~lpe  171 (178)
T d1wf3a1         162 KADLLALMPE  171 (178)
T ss_dssp             HHHHHTTCCB
T ss_pred             HHHHHHhCCC
Confidence            9999987754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=1.3e-22  Score=136.91  Aligned_cols=149  Identities=21%  Similarity=0.186  Sum_probs=98.8

Q ss_pred             ccccCCCCCceeeeeceeee-------eeeeeEEEEEEEE-CCEEEEEEEcCCCCCc-------hhhHHhhccCCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF-------LLLVRFNVEKVQY-KNVIFTVWDVGGQEKL-------RPLWRHYFNNTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~-------~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~~ii~   66 (169)
                      |++.+++|||||+|++....       ..|....+..... .+.++.+|||||....       .......+..++++++
T Consensus         6 ivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~   85 (180)
T d1udxa2           6 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLY   85 (180)
T ss_dssp             EECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhh
Confidence            57899999999999884322       2222233333333 5778999999995432       1223345778999999


Q ss_pred             EEECCCh--hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           67 VVDSLDR--ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        67 v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      ++|....  ..+.....|+....  ....+.|+++|+||+|+.+....+++.+.+.     ..+.+++++||++|+|+++
T Consensus        86 ~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~-----~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          86 VLDAADEPLKTLETLRKEVGAYD--PALLRRPSLVALNKVDLLEEEAVKALADALA-----REGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEETTSCHHHHHHHHHHHHHHHC--HHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----TTTSCEEECCTTTCTTHHH
T ss_pred             hcccccccccchhhhhhhhhccc--cccchhhhhhhhhhhhhhhHHHHHHHHHHHH-----hcCCeEEEEEcCCCCCHHH
Confidence            9998653  23333334443321  1123579999999999965433333333332     3356799999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030931          145 GLDWLASTLKEMR  157 (169)
Q Consensus       145 ~~~~l~~~~~~~~  157 (169)
                      +++.+.+.+....
T Consensus       159 L~~~i~~~l~~~~  171 (180)
T d1udxa2         159 LKEALHALVRSTP  171 (180)
T ss_dssp             HHHHHHHHHHTSC
T ss_pred             HHHHHHHHHhhcC
Confidence            9999999887643

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.7e-22  Score=133.94  Aligned_cols=139  Identities=15%  Similarity=0.123  Sum_probs=99.6

Q ss_pred             ccccCCCCCceeeeecee--------eeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhh--------HHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYL--------LFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPL--------WRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~--------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~~~~ii   65 (169)
                      +.+.+++|||||++++..        .+..+.......+...+..+.+||++|.......        ...+++.+++++
T Consensus         6 lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i   85 (161)
T d2gj8a1           6 IAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVL   85 (161)
T ss_dssp             EEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhccccc
Confidence            678999999999998721        1222333445567778999999999997654322        234578999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHHH
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEG  145 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~  145 (169)
                      +++|..+..++.....|...+....  .+.|+++|+||+|+.+....  .        .+..+.+++++||++|.||+++
T Consensus        86 ~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~iilv~NK~Dl~~~~~~--~--------~~~~~~~~~~iSAk~~~gi~~L  153 (161)
T d2gj8a1          86 FMVDGTTTDAVDPAEIWPEFIARLP--AKLPITVVRNKADITGETLG--M--------SEVNGHALIRLSARTGEGVDVL  153 (161)
T ss_dssp             EEEETTTCCCCSHHHHCHHHHHHSC--TTCCEEEEEECHHHHCCCCE--E--------EEETTEEEEECCTTTCTTHHHH
T ss_pred             eeeccccccchhhhhhhhhhhhhcc--cccceeeccchhhhhhhHHH--H--------HHhCCCcEEEEECCCCCCHHHH
Confidence            9999988777666655544443222  46899999999998543210  0        1223457999999999999999


Q ss_pred             HHHHHHH
Q 030931          146 LDWLAST  152 (169)
Q Consensus       146 ~~~l~~~  152 (169)
                      +++|.+.
T Consensus       154 ~~~l~~~  160 (161)
T d2gj8a1         154 RNHLKQS  160 (161)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9999875

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=4.1e-21  Score=126.97  Aligned_cols=137  Identities=21%  Similarity=0.189  Sum_probs=99.7

Q ss_pred             ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEECCEEEEEEEcCCCCC--------c-hhhHHhhccCCCEE
Q 030931            2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYKNVIFTVWDVGGQEK--------L-RPLWRHYFNNTDGL   64 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~--------~-~~~~~~~~~~~~~i   64 (169)
                      |++.+++|||||+|++...        ...|.......+...+..+.+|||||...        . .......++.+|++
T Consensus         5 liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~i   84 (160)
T d1xzpa2           5 IVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIV   84 (160)
T ss_dssp             EECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEE
T ss_pred             EECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEE
Confidence            6789999999999987322        12222334455677899999999999432        1 11223346789999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      ++|+|.++........- ....      ...|+++++||+|+.+....+++...++..      .+++++||++|+||++
T Consensus        85 i~v~d~~~~~~~~~~~~-~~~~------~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~------~~~~~vSA~~g~gi~~  151 (160)
T d1xzpa2          85 LFVLDASSPLDEEDRKI-LERI------KNKRYLVVINKVDVVEKINEEEIKNKLGTD------RHMVKISALKGEGLEK  151 (160)
T ss_dssp             EEEEETTSCCCHHHHHH-HHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHTCS------TTEEEEEGGGTCCHHH
T ss_pred             EEEEeCCCCcchhhhhh-hhhc------ccccceeeeeeccccchhhhHHHHHHhCCC------CcEEEEECCCCCCHHH
Confidence            99999988766554332 2222      357899999999998888888877776532      3589999999999999


Q ss_pred             HHHHHHH
Q 030931          145 GLDWLAS  151 (169)
Q Consensus       145 ~~~~l~~  151 (169)
                      ++++|.+
T Consensus       152 L~~~I~k  158 (160)
T d1xzpa2         152 LEESIYR  158 (160)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999875

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3.6e-21  Score=132.51  Aligned_cols=150  Identities=19%  Similarity=0.185  Sum_probs=104.2

Q ss_pred             ccccCCCCCceeeeece----eeeeeeeeEEEEEEEE---CCEEEEEEEcCCCCCch-hhHHhhccCCCEEEEEEECCCh
Q 030931            2 LRVKQPYCTSCTLVKFY----LLFLLLVRFNVEKVQY---KNVIFTVWDVGGQEKLR-PLWRHYFNNTDGLIYVVDSLDR   73 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~-~~~~~~~~~~~~ii~v~d~~~~   73 (169)
                      |++.+++|||||+++|.    ....||.+.+...+..   .++.+.+||++|+++++ ..+..+++.++++++|+|+++.
T Consensus         5 ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~   84 (207)
T d2fh5b1           5 FVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF   84 (207)
T ss_dssp             EECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTH
T ss_pred             EECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEcccc
Confidence            57799999999999872    3345777777666655   57899999999999875 5678888999999999999987


Q ss_pred             hhH-HHHHHHHHHHhc--CCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCC-----------------------CCC---
Q 030931           74 ERI-GKAKQEFQAIIK--DPFMLNSVILVFANKQDMKGAMTPMEVCEGLGL-----------------------FDL---  124 (169)
Q Consensus        74 ~~~-~~~~~~~~~~~~--~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-----------------------~~~---  124 (169)
                      .++ .....++..++.  .....++|+++|+||+|++++.+.+++.+.+..                       ...   
T Consensus        85 ~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (207)
T d2fh5b1          85 QREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKK  164 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCT
T ss_pred             cccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhhhccc
Confidence            654 444555555443  122346899999999999877665554332210                       000   


Q ss_pred             --------CCceeEEEEeeeccCCC------HHHHHHHHHH
Q 030931          125 --------KNRKWHIQGTCALKGDG------LYEGLDWLAS  151 (169)
Q Consensus       125 --------~~~~~~~~~~Sa~~~~g------i~~~~~~l~~  151 (169)
                              ......++++|+++|.|      ++++-+|+.+
T Consensus       165 ~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~  205 (207)
T d2fh5b1         165 GKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK  205 (207)
T ss_dssp             TSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred             chhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHH
Confidence                    11235789999999987      7777777765

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=1.5e-21  Score=130.60  Aligned_cols=146  Identities=14%  Similarity=-0.002  Sum_probs=96.4

Q ss_pred             ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEECCEEEEEEEcCCCCCch---------hhHHhhccCCCEE
Q 030931            2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLR---------PLWRHYFNNTDGL   64 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~~~~~i   64 (169)
                      |++.+++|||||++++...        ...|.......+......+.+||++|.....         .....++..+|++
T Consensus         5 liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i   84 (171)
T d1mkya1           5 IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLV   84 (171)
T ss_dssp             EECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEE
T ss_pred             EECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccCcEE
Confidence            6789999999999988332        2223334455677789999999999953321         2233456789999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      +++.|.++...... ..++..+.+    .++|+++|+||+|+.+....+...+....     ...+++++||++|.|+++
T Consensus        85 ~~~~~~~~~~~~~~-~~~~~~l~~----~~~pviiv~NK~Dl~~~~~~~~~~~~~~~-----~~~~~i~iSAk~g~gid~  154 (171)
T d1mkya1          85 LFVVDGKRGITKED-ESLADFLRK----STVDTILVANKAENLREFEREVKPELYSL-----GFGEPIPVSAEHNINLDT  154 (171)
T ss_dssp             EEEEETTTCCCHHH-HHHHHHHHH----HTCCEEEEEESCCSHHHHHHHTHHHHGGG-----SSCSCEECBTTTTBSHHH
T ss_pred             EEeecccccccccc-ccccccccc----ccccccccchhhhhhhhhhhHHHHHHHhc-----CCCCeEEEecCCCCCHHH
Confidence            99999876544332 233333321    36799999999998643221111111111     122468999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 030931          145 GLDWLASTLKEMR  157 (169)
Q Consensus       145 ~~~~l~~~~~~~~  157 (169)
                      ++++|.+.+.++.
T Consensus       155 L~~~i~~~l~e~~  167 (171)
T d1mkya1         155 MLETIIKKLEEKG  167 (171)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCC
Confidence            9999999887764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.84  E-value=1.3e-21  Score=132.06  Aligned_cols=150  Identities=15%  Similarity=0.077  Sum_probs=101.9

Q ss_pred             ccccCCCCCceeeeeceeee--------------eeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF--------------LLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYV   67 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~--------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   67 (169)
                      +++.+.+|||||++++....              ..|.......+...+..+.++|++|+..+.......+..+|++++|
T Consensus        10 iiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv   89 (179)
T d1wb1a4          10 IFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIV   89 (179)
T ss_dssp             EEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEE
T ss_pred             EEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhccccccc
Confidence            56789999999999873211              0111122334566889999999999999988888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh---HHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           68 VDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM---EVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        68 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      +|.++....... ..+..+..    .++|+++|+||+|+.+.....   +..+.+..........+++++||++|+|+++
T Consensus        90 ~d~~~g~~~~~~-~~~~~~~~----~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~e  164 (179)
T d1wb1a4          90 VDAKEGPKTQTG-EHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDE  164 (179)
T ss_dssp             EETTTCSCHHHH-HHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHH
T ss_pred             cccccccchhhh-hhhhhhhh----cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHH
Confidence            999875433222 22222211    368999999999986542211   1111111111122345799999999999999


Q ss_pred             HHHHHHHHHHhh
Q 030931          145 GLDWLASTLKEM  156 (169)
Q Consensus       145 ~~~~l~~~~~~~  156 (169)
                      +++.+.+.+.+.
T Consensus       165 L~~~I~~~l~~~  176 (179)
T d1wb1a4         165 LKNLIITTLNNA  176 (179)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHhcCCcc
Confidence            999999888764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=4.9e-21  Score=129.60  Aligned_cols=150  Identities=19%  Similarity=0.075  Sum_probs=96.1

Q ss_pred             ccccCCCCCceeeeeceeee-------eeeeeEEEEEEEE-CCEEEEEEEcCCCC----Cchhh---HHhhccCCCEEEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF-------LLLVRFNVEKVQY-KNVIFTVWDVGGQE----KLRPL---WRHYFNNTDGLIY   66 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~-------~~t~~~~~~~~~~-~~~~~~i~D~~G~~----~~~~~---~~~~~~~~~~ii~   66 (169)
                      |++.+++|||||+|++....       ..|...+...... .+..+.+|||||..    ....+   ....+..++.+++
T Consensus         6 iiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~   85 (185)
T d1lnza2           6 LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVH   85 (185)
T ss_dssp             EESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhhhhh
Confidence            57899999999999884333       3344444555555 45679999999942    11112   2233567899999


Q ss_pred             EEECCChhhHHH--HHHH--HHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-hHHHhhhCCCCCCCceeEEEEeeeccCCC
Q 030931           67 VVDSLDRERIGK--AKQE--FQAIIKDPFMLNSVILVFANKQDMKGAMTP-MEVCEGLGLFDLKNRKWHIQGTCALKGDG  141 (169)
Q Consensus        67 v~d~~~~~~~~~--~~~~--~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  141 (169)
                      +++.........  ...+  ...........++|+++|+||+|+.+.... +.+.+.+      ..+.+++.+||++|.|
T Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~------~~~~~v~~iSA~~g~G  159 (185)
T d1lnza2          86 VIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKL------TDDYPVFPISAVTREG  159 (185)
T ss_dssp             EEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHC------CSCCCBCCCSSCCSST
T ss_pred             eeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHh------ccCCcEEEEECCCCCC
Confidence            998764432211  1111  112222344557899999999999753211 2222222      2245689999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q 030931          142 LYEGLDWLASTLKEMR  157 (169)
Q Consensus       142 i~~~~~~l~~~~~~~~  157 (169)
                      ++++++++++.+.+..
T Consensus       160 i~~L~~~i~~~L~~~p  175 (185)
T d1lnza2         160 LRELLFEVANQLENTP  175 (185)
T ss_dssp             THHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhhhhCC
Confidence            9999999999886643

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=3.8e-19  Score=120.16  Aligned_cols=150  Identities=11%  Similarity=-0.076  Sum_probs=94.2

Q ss_pred             ccccCCCCCceeeeeceee--------eeeeeeEEEEEEEECCEEEEEEEcCCCCCch------------hhHHhhccCC
Q 030931            2 LRVKQPYCTSCTLVKFYLL--------FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLR------------PLWRHYFNNT   61 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~--------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~------------~~~~~~~~~~   61 (169)
                      +++.+++|||||++++...        ...|.......+...+..+.++|+||.....            ......++.+
T Consensus        13 iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (186)
T d1mkya2          13 IVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKA   92 (186)
T ss_dssp             EECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHC
T ss_pred             EECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHHHHHHhcC
Confidence            5689999999999987322        2222223334566788899999999965422            2334456789


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCCceeEEEEeeeccC
Q 030931           62 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKNRKWHIQGTCALKG  139 (169)
Q Consensus        62 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  139 (169)
                      |++++|+|++....- ....++..+..    .+.|+++|+||+|+.....  ..++.+.+..........+++++||++|
T Consensus        93 dvii~v~d~~~~~~~-~~~~~~~~~~~----~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g  167 (186)
T d1mkya2          93 DVVVIVLDATQGITR-QDQRMAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKG  167 (186)
T ss_dssp             SEEEEEEETTTCCCH-HHHHHHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTT
T ss_pred             CEEEEeecccccchh-hHHHHHHHHHH----cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCC
Confidence            999999999754322 22233333322    3689999999999864322  2333333222111222346899999999


Q ss_pred             CCHHHHHHHHHHHHHhh
Q 030931          140 DGLYEGLDWLASTLKEM  156 (169)
Q Consensus       140 ~gi~~~~~~l~~~~~~~  156 (169)
                      .|+++++++|.+.+...
T Consensus       168 ~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         168 WNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             BSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            99999999997766543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=6.4e-21  Score=128.72  Aligned_cols=147  Identities=16%  Similarity=0.121  Sum_probs=90.9

Q ss_pred             CccccCCCCCceeeeeceeee-------eeeeeEEEEEEEECCEEEEEEEcCCCCCc---------------hhhHHhhc
Q 030931            1 MLRVKQPYCTSCTLVKFYLLF-------LLLVRFNVEKVQYKNVIFTVWDVGGQEKL---------------RPLWRHYF   58 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~---------------~~~~~~~~   58 (169)
                      +|++.+++|||||+|++....       ..|..  ...+....  +.+|||||....               .......+
T Consensus         4 ~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~~--~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (184)
T d2cxxa1           4 IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWKN--HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA   79 (184)
T ss_dssp             EEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEETT--EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG
T ss_pred             EEECCCCCCHHHHHHHHhCCCceeeCCCCEeec--cccccccc--ceecccCCceeccccccccccccchhhhhhhhhcc
Confidence            367899999999999874321       22333  23344454  578999995321               11123446


Q ss_pred             cCCCEEEEEEECCChhhHHHHH----------HHHHHHhcCCCCCCCeEEEEEeCCCCCCCCC--HhHHHhhhCCCCCCC
Q 030931           59 NNTDGLIYVVDSLDRERIGKAK----------QEFQAIIKDPFMLNSVILVFANKQDMKGAMT--PMEVCEGLGLFDLKN  126 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~  126 (169)
                      +.+|++++|+|...........          ..+..+ ..   .+.|+++|+||+|+.+...  .....+.+... ...
T Consensus        80 ~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l-~~---~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~-~~~  154 (184)
T d2cxxa1          80 KNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL-RE---LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP-LSE  154 (184)
T ss_dssp             GGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHH-HH---TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC-GGG
T ss_pred             cccchheeeeeccccchhhhhhhhccccHHHHHHHHHH-HH---cCCCEEEEEeeeehhhhHHHHHHHHHHHhccc-ccc
Confidence            7899999999986543221111          112222 21   3689999999999754211  11122223221 122


Q ss_pred             ceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          127 RKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       127 ~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      ....++++||++|+|++++++++.+.+.++
T Consensus       155 ~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         155 IDKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             HHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence            334588999999999999999999988763

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.76  E-value=6.2e-19  Score=122.91  Aligned_cols=150  Identities=15%  Similarity=0.038  Sum_probs=96.4

Q ss_pred             ccccCCCCCceeeeeceee-------eeeeeeEEEEE------------------EEECCEEEEEEEcCCCCCchhhHHh
Q 030931            2 LRVKQPYCTSCTLVKFYLL-------FLLLVRFNVEK------------------VQYKNVIFTVWDVGGQEKLRPLWRH   56 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-------~~~t~~~~~~~------------------~~~~~~~~~i~D~~G~~~~~~~~~~   56 (169)
                      +++-+++|||||++++...       ...|.......                  ++.+...+.++|||||+.|......
T Consensus        10 IiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~~   89 (227)
T d1g7sa4          10 VLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKR   89 (227)
T ss_dssp             EECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCS
T ss_pred             EEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccchh
Confidence            4568899999999976211       11111111111                  2335678999999999999888888


Q ss_pred             hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---hHHHhh---------------
Q 030931           57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---MEVCEG---------------  118 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~---------------  118 (169)
                      .+..+|++|+|+|+.+.-.-.. ...+..+..    .+.|+++|+||+|+.+....   ..+...               
T Consensus        90 ~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  164 (227)
T d1g7sa4          90 GGALADLAILIVDINEGFKPQT-QEALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTK  164 (227)
T ss_dssp             SSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHH
T ss_pred             cccccceEEEEEecccCcccch-hHHHHHhhc----CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHHH
Confidence            8999999999999976433222 222223322    37899999999998653210   000000               


Q ss_pred             -------hC----------CCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          119 -------LG----------LFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       119 -------~~----------~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                             +.          .........+++++||++|.|++++++.+.....+.
T Consensus       165 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~  219 (227)
T d1g7sa4         165 VYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (227)
T ss_dssp             HHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence                   00          000012346799999999999999999988876554

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.71  E-value=6.4e-18  Score=114.94  Aligned_cols=147  Identities=11%  Similarity=-0.064  Sum_probs=85.8

Q ss_pred             ccccCCCCCceeeeeceeeee--eeee-----EEEEEEEECCEEEEEEEcCCCCCc-------------hhhHHhhccCC
Q 030931            2 LRVKQPYCTSCTLVKFYLLFL--LLVR-----FNVEKVQYKNVIFTVWDVGGQEKL-------------RPLWRHYFNNT   61 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~--~t~~-----~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~   61 (169)
                      |++.+++|||||+|++.....  .+..     ....... ....+.+.|++|....             ...+...+..+
T Consensus        28 lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (195)
T d1svia_          28 LAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI-INDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREEL  106 (195)
T ss_dssp             EEEBTTSSHHHHHHHHHTC-------------CCEEEEE-ETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTE
T ss_pred             EECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccc-ccccceEEEEEeeccccccccccchhhhHHhhhhccccch
Confidence            578999999999998843211  1111     1111111 2334556676653221             11122344567


Q ss_pred             CEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCC
Q 030931           62 DGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDG  141 (169)
Q Consensus        62 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  141 (169)
                      +++++++|+++...-. ..+++..+ +.   .+.|+++|+||+|+.+.....+..+.+..........+++++||++|+|
T Consensus       107 ~~vi~viD~~~~~~~~-~~~~~~~l-~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~~~~g  181 (195)
T d1svia_         107 KAVVQIVDLRHAPSND-DVQMYEFL-KY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKG  181 (195)
T ss_dssp             EEEEEEEETTSCCCHH-HHHHHHHH-HH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTT
T ss_pred             hhhhhhhhcccccccc-cccccccc-cc---ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeCCCCCC
Confidence            9999999997543321 12333333 21   3689999999999865444333332221111123445789999999999


Q ss_pred             HHHHHHHHHHHHH
Q 030931          142 LYEGLDWLASTLK  154 (169)
Q Consensus       142 i~~~~~~l~~~~~  154 (169)
                      +++++++|.+.+.
T Consensus       182 i~el~~~i~~~l~  194 (195)
T d1svia_         182 KDEAWGAIKKMIN  194 (195)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999988763

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.70  E-value=4.9e-18  Score=115.57  Aligned_cols=148  Identities=15%  Similarity=0.014  Sum_probs=99.3

Q ss_pred             ccccCCCCCceeeeece-----------------------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhc
Q 030931            2 LRVKQPYCTSCTLVKFY-----------------------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF   58 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-----------------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   58 (169)
                      +++-.++|||||++++.                       ....-|+......+.+.+..+.+.|||||..|.......+
T Consensus         8 iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~~~~   87 (196)
T d1d2ea3           8 TIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGT   87 (196)
T ss_dssp             EESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTS
T ss_pred             EEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHHHHHHH
Confidence            34567899999999651                       1123344445566777899999999999999988888889


Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH-h----HHHhhhCCCCCCCceeEEEE
Q 030931           59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP-M----EVCEGLGLFDLKNRKWHIQG  133 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~----~~~~~~~~~~~~~~~~~~~~  133 (169)
                      +.+|++++|+|+.+... .+..+.+..+...   ...|++++.||+|+...... +    ++.+.+.........+++++
T Consensus        88 ~~aD~allVVda~~G~~-~QT~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~  163 (196)
T d1d2ea3          88 APLDGCILVVAANDGPM-PQTREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIV  163 (196)
T ss_dssp             SCCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEE
T ss_pred             hhcCeEEEEEEcCCCCc-hhHHHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcccCEEEE
Confidence            99999999999976432 2233323222111   24689999999998642111 1    22222221112233467999


Q ss_pred             eeeccC----------CCHHHHHHHHHHHH
Q 030931          134 TCALKG----------DGLYEGLDWLASTL  153 (169)
Q Consensus       134 ~Sa~~~----------~gi~~~~~~l~~~~  153 (169)
                      +||++|          .|+.++++.+.+.+
T Consensus       164 iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         164 GSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             CCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             EEccccccccCcccccCCHHHHHHHHHhhC
Confidence            999998          58888888776654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.69  E-value=5.2e-18  Score=115.55  Aligned_cols=113  Identities=15%  Similarity=0.065  Sum_probs=77.7

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH---
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP---  112 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---  112 (169)
                      ..++.++|||||+.|.......+..+|++++|+|+.+........+.+..+...   ...+++++.||+|+.+....   
T Consensus        77 ~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~  153 (195)
T d1kk1a3          77 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALEN  153 (195)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHH
T ss_pred             ceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHH
Confidence            467999999999999988888899999999999997643222222222222111   23568999999998753211   


Q ss_pred             -hHHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931          113 -MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus       113 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                       ..+.+.+..  .....++++++||++|+|++++++.+.+.+
T Consensus       154 ~~~~~~~~~~--~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         154 YRQIKEFIEG--TVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHhcc--ccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence             122222221  122346799999999999999999987754

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.67  E-value=3e-17  Score=112.57  Aligned_cols=113  Identities=16%  Similarity=0.067  Sum_probs=77.8

Q ss_pred             EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh---
Q 030931           37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM---  113 (169)
Q Consensus        37 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~---  113 (169)
                      .++.+.|+|||..|.......+..+|++|+|+|+.+.-.-...++.+... ...  .-.|++++.||+|+.+.....   
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~-~~~--~i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVAL-GII--GVKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHT--TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHH-HHc--CCceeeeccccCCCccchHHHHHH
Confidence            57999999999999888888889999999999997642122222222222 111  235899999999996532211   


Q ss_pred             -HHHhhhCCCCCCCceeEEEEeeeccCCCHHHHHHHHHHHHH
Q 030931          114 -EVCEGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLASTLK  154 (169)
Q Consensus       114 -~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~  154 (169)
                       ++...+..  .....++++++||++|.||+++++.+...++
T Consensus       163 ~~~~~~l~~--~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         163 RQIKQFTKG--TWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHHHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHhcc--ccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence             12222221  1233567999999999999999999887654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=1.5e-16  Score=113.00  Aligned_cols=102  Identities=18%  Similarity=0.106  Sum_probs=77.8

Q ss_pred             ccccCCCCCceeeeec-------------------------eeeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931            2 LRVKQPYCTSCTLVKF-------------------------YLLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH   56 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f-------------------------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   56 (169)
                      +++-.++|||||+.++                         ..+...|+......+.+++.+++++||||+..|......
T Consensus        11 i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e~~~   90 (276)
T d2bv3a2          11 IAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVER   90 (276)
T ss_dssp             EEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTTHHH
T ss_pred             EEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHHHHHH
Confidence            3557799999999964                         111223444556778999999999999999999999999


Q ss_pred             hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      .++-+|++|+|+|..+.-.......| +...+    .++|.++++||+|...
T Consensus        91 ~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~----~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          91 SMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK----YKVPRIAFANKMDKTG  137 (276)
T ss_dssp             HHHHCCEEEEEEETTTSSCHHHHHHH-HHHHT----TTCCEEEEEECTTSTT
T ss_pred             HHHhhhheEEeccccCCcchhHHHHH-HHHHH----cCCCEEEEEecccccc
Confidence            99999999999999876544444444 33322    4799999999999763

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=1.3e-17  Score=114.35  Aligned_cols=111  Identities=21%  Similarity=0.195  Sum_probs=78.7

Q ss_pred             CccccCCCCCceeeeece-eeeeeeee--EEEEEEEECCEEEEEEEcCCCCCchhhHHhhc----cCCCEEEEEEECCC-
Q 030931            1 MLRVKQPYCTSCTLVKFY-LLFLLLVR--FNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYF----NNTDGLIYVVDSLD-   72 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~-~~~~~t~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~----~~~~~ii~v~d~~~-   72 (169)
                      +|++.+++|||||+|++. ....|+..  .....+..++..+.+||+||++.+...+..++    ..++.+++++|..+ 
T Consensus         7 ~lvG~~n~GKTSLln~l~~~~~~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~   86 (209)
T d1nrjb_           7 IIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD   86 (209)
T ss_dssp             EEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSC
T ss_pred             EEECCCCCCHHHHHHHHhCCCCCCeEEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEecc
Confidence            367899999999999983 22333333  33444566788899999999998777665544    45689999999764 


Q ss_pred             hhhHHHHHHHHHHHh---cCCCCCCCeEEEEEeCCCCCCCCC
Q 030931           73 RERIGKAKQEFQAII---KDPFMLNSVILVFANKQDMKGAMT  111 (169)
Q Consensus        73 ~~~~~~~~~~~~~~~---~~~~~~~~piivv~nK~Dl~~~~~  111 (169)
                      ..+++....|+..++   +.....+.|+++|+||+|+.+...
T Consensus        87 ~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~  128 (209)
T d1nrjb_          87 PKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  128 (209)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence            566677666654433   222335899999999999976544

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.63  E-value=6.6e-17  Score=110.67  Aligned_cols=133  Identities=16%  Similarity=0.071  Sum_probs=89.5

Q ss_pred             ccccCCCCCceeeeece------------------------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhh
Q 030931            2 LRVKQPYCTSCTLVKFY------------------------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHY   57 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~------------------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   57 (169)
                      +++-.++|||||++++.                        .+..-|+......+.+.+.++.+.|||||..|.......
T Consensus         8 iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~~~~~~   87 (204)
T d2c78a3           8 TIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITG   87 (204)
T ss_dssp             EECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHH
T ss_pred             EEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHHHHHHH
Confidence            45678999999998751                        111345666677888999999999999999999988889


Q ss_pred             ccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCe-EEEEEeCCCCCCCCC-H----hHHHhhhCCCCCCCceeEE
Q 030931           58 FNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSV-ILVFANKQDMKGAMT-P----MEVCEGLGLFDLKNRKWHI  131 (169)
Q Consensus        58 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~~~  131 (169)
                      ++.||++|+|+|+.+.........|. .+..    .++| +++++||+|+.+... .    .++.+.+..........++
T Consensus        88 ~~~aD~avlVvda~~Gv~~qt~~~~~-~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~  162 (204)
T d2c78a3          88 AAQMDGAILVVSAADGPMPQTREHIL-LARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPV  162 (204)
T ss_dssp             HTTCSSEEEEEETTTCCCHHHHHHHH-HHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCE
T ss_pred             HHHCCEEEEEEECCCCCcHHHHHHHH-HHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCccccee
Confidence            99999999999997755444333332 2211    2555 788899999864211 1    2222322221222344568


Q ss_pred             EEeeeccC
Q 030931          132 QGTCALKG  139 (169)
Q Consensus       132 ~~~Sa~~~  139 (169)
                      +..||..+
T Consensus       163 i~~sa~~~  170 (204)
T d2c78a3         163 IRGSALLA  170 (204)
T ss_dssp             EECCHHHH
T ss_pred             eeeechhh
Confidence            88888643

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.62  E-value=2.5e-15  Score=103.82  Aligned_cols=111  Identities=19%  Similarity=0.113  Sum_probs=74.7

Q ss_pred             EEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCC-CeEEEEEeCCCCC
Q 030931           29 VEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLN-SVILVFANKQDMK  107 (169)
Q Consensus        29 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~piivv~nK~Dl~  107 (169)
                      ...+...+.++.+.|+|||+.|..........+|++++|+|+.+...-.. .+.+... ..   .+ ..++++.||+|+.
T Consensus        81 ~~~~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt-~e~~~~~-~~---~gv~~iiv~vNK~D~~  155 (222)
T d1zunb3          81 YRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIA-SL---LGIKHIVVAINKMDLN  155 (222)
T ss_dssp             EEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHH-HH---TTCCEEEEEEECTTTT
T ss_pred             EEEEeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccch-HHHHHHH-HH---cCCCEEEEEEEccccc
Confidence            44456678999999999999999888888999999999999976432222 2222222 11   24 4589999999997


Q ss_pred             CCCCH--h----HHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931          108 GAMTP--M----EVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus       108 ~~~~~--~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      +....  .    ++...+.........++++++||++|.|+.+
T Consensus       156 ~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         156 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             cccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            64321  1    2222221122233567899999999999843

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.60  E-value=1.2e-15  Score=107.87  Aligned_cols=101  Identities=15%  Similarity=0.085  Sum_probs=78.1

Q ss_pred             ccccCCCCCceeeeec---e----------------------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHh
Q 030931            2 LRVKQPYCTSCTLVKF---Y----------------------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRH   56 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f---~----------------------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   56 (169)
                      +++-.++|||||+.++   .                      .....|+......+.+++++++++||||+..|......
T Consensus         7 iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e~~~   86 (267)
T d2dy1a2           7 LVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRG   86 (267)
T ss_dssp             EEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHH
T ss_pred             EEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhhhhh
Confidence            3567899999999965   0                      12234555677889999999999999999999999999


Q ss_pred             hccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           57 YFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      .++-+|++|+|+|+.+.-.......|. ...+    .++|.++++||+|..
T Consensus        87 al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~----~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          87 ALEAADAALVAVSAEAGVQVGTERAWT-VAER----LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEEEEECGGGC
T ss_pred             hhcccCceEEEeeccCCccchhHHHHH-hhhh----ccccccccccccccc
Confidence            999999999999998654444433332 3322    378999999999964

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2.2e-15  Score=100.60  Aligned_cols=147  Identities=13%  Similarity=0.011  Sum_probs=88.8

Q ss_pred             ccccCCCCCceeeeeceeee-------eeeeeEE-EEEEEECCEEEEEEEcCCCCCchhhH---------HhhccCCCEE
Q 030931            2 LRVKQPYCTSCTLVKFYLLF-------LLLVRFN-VEKVQYKNVIFTVWDVGGQEKLRPLW---------RHYFNNTDGL   64 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~-------~~t~~~~-~~~~~~~~~~~~i~D~~G~~~~~~~~---------~~~~~~~~~i   64 (169)
                      |++.+++|||||+|++....       ..|.... ......+...+..||++|........         ......++++
T Consensus        10 iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (179)
T d1egaa1          10 IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELV   89 (179)
T ss_dssp             EECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhhccee
Confidence            67899999999999884322       1222222 23344577778889998865332211         1123456777


Q ss_pred             EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           65 IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        65 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      +++.|..+..  .....+...+.+    ...|.++++||+|.....  .++..............+++++||++|+|+++
T Consensus        90 l~~~d~~~~~--~~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~--~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~  161 (179)
T d1egaa1          90 IFVVEGTRWT--PDDEMVLNKLRE----GKAPVILAVNKVDNVQEK--ADLLPHLQFLASQMNFLDIVPISAETGLNVDT  161 (179)
T ss_dssp             EEEEETTCCC--HHHHHHHHHHHS----SSSCEEEEEESTTTCCCH--HHHHHHHHHHHTTSCCSEEEECCTTTTTTHHH
T ss_pred             EEEEecCccc--hhHHHHHHHhhh----ccCceeeeeeeeeccchh--hhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHH
Confidence            7888876432  222223333322    356899999999976432  22211111111122335799999999999999


Q ss_pred             HHHHHHHHHHhh
Q 030931          145 GLDWLASTLKEM  156 (169)
Q Consensus       145 ~~~~l~~~~~~~  156 (169)
                      +++++.+.+++.
T Consensus       162 L~~~i~~~lpe~  173 (179)
T d1egaa1         162 IAAIVRKHLPEA  173 (179)
T ss_dssp             HHHHHHTTCCBC
T ss_pred             HHHHHHHhCCCC
Confidence            999998877553

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=8.2e-15  Score=102.30  Aligned_cols=119  Identities=14%  Similarity=0.074  Sum_probs=79.5

Q ss_pred             eeeeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHH-------HHHHHHHHHhcCCCCC
Q 030931           21 FLLLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIG-------KAKQEFQAIIKDPFML   93 (169)
Q Consensus        21 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~   93 (169)
                      ...|+...+..+.+.++++.|.|||||..|......-+..+|++|+|+|+.+.. |+       +..+.+... +.   -
T Consensus        68 rGiTi~~~~~~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~-~e~g~~~~~QT~eh~~~~-~~---~  142 (239)
T d1f60a3          68 RGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE-FEAGISKDGQTREHALLA-FT---L  142 (239)
T ss_dssp             TTCCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHH-HHHHTCTTSHHHHHHHHH-HH---T
T ss_pred             ceeccccceeEeccCCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCc-cccccCchHhHHHHHHHH-HH---c
Confidence            345666667888999999999999999999999999999999999999996531 11       122222221 11   1


Q ss_pred             CC-eEEEEEeCCCCCCCCCH------hHHHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           94 NS-VILVFANKQDMKGAMTP------MEVCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        94 ~~-piivv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      ++ +++++.||+|+.+....      .++...+.........++++++||.+|.|+-+
T Consensus       143 gv~~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         143 GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             TCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            34 58899999998764321      12222221111122346789999999998744

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.48  E-value=3.2e-14  Score=98.47  Aligned_cols=119  Identities=19%  Similarity=0.232  Sum_probs=74.3

Q ss_pred             eeeeEEEEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhh------HHHHHHHHHHHhcCCCCCCCe
Q 030931           23 LLVRFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRER------IGKAKQEFQAIIKDPFMLNSV   96 (169)
Q Consensus        23 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~p   96 (169)
                      .|+......++..++.+++.|||||..|........+-+|++|+|+|+.+...      .....+.+... +  .....+
T Consensus        67 ~ti~~~~~~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~-~--~~~~~~  143 (224)
T d1jnya3          67 VTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILA-K--TMGLDQ  143 (224)
T ss_dssp             -------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-H--HTTCTT
T ss_pred             ccccceEEEEecCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHH-H--HhCCCc
Confidence            34445556678889999999999999999999999999999999999976321      11122111111 1  112457


Q ss_pred             EEEEEeCCCCCCCC-CH---hH----HHhhhCCCCCCCceeEEEEeeeccCCCHHH
Q 030931           97 ILVFANKQDMKGAM-TP---ME----VCEGLGLFDLKNRKWHIQGTCALKGDGLYE  144 (169)
Q Consensus        97 iivv~nK~Dl~~~~-~~---~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  144 (169)
                      ++++.||+|+.... +.   ++    +...+..........+++++||..|.|+.+
T Consensus       144 iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         144 LIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             eEEEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            89999999986532 11   11    111111111233456789999999999854

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.42  E-value=1.3e-13  Score=96.52  Aligned_cols=116  Identities=15%  Similarity=0.137  Sum_probs=64.8

Q ss_pred             EEEEEECCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChh---hH---HHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030931           29 VEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRE---RI---GKAKQEFQAIIKDPFMLNSVILVFAN  102 (169)
Q Consensus        29 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~piivv~n  102 (169)
                      ...+.+...++.+.|+|||..|..........+|++++|+|+.+..   ++   ....+.+..+ ...  .-.+++++.|
T Consensus        94 ~~~~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~-~~~--~i~~iiv~iN  170 (245)
T d1r5ba3          94 RAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RTQ--GINHLVVVIN  170 (245)
T ss_dssp             CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HHT--TCSSEEEEEE
T ss_pred             ccccccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHH-HHc--CCCeEEEEEE
Confidence            3446667899999999999999998888899999999999997531   00   0122222111 111  1235889999


Q ss_pred             CCCCCCCCC----HhHHHhhhCCC------CCCCceeEEEEeeeccCCCHHHHHH
Q 030931          103 KQDMKGAMT----PMEVCEGLGLF------DLKNRKWHIQGTCALKGDGLYEGLD  147 (169)
Q Consensus       103 K~Dl~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~gi~~~~~  147 (169)
                      |+|+.....    .+++.+.+...      .-....++++++||++|+||.++++
T Consensus       171 KmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         171 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             CTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             cCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            999975432    12222222110      0012246899999999999977544

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=6.8e-13  Score=88.56  Aligned_cols=144  Identities=15%  Similarity=0.000  Sum_probs=74.1

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee-------EEE-EEEEECCEEEEEEEcCC-CCCchh-------hHH---hhccCCC
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR-------FNV-EKVQYKNVIFTVWDVGG-QEKLRP-------LWR---HYFNNTD   62 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~-------~~~-~~~~~~~~~~~i~D~~G-~~~~~~-------~~~---~~~~~~~   62 (169)
                      |++.+++|||||+|++.........       ... ......+......+.++ ......       ...   .....+.
T Consensus        21 lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (188)
T d1puia_          21 FAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQ  100 (188)
T ss_dssp             EEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEE
T ss_pred             EECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhhhhhhhhee
Confidence            5679999999999988443221111       111 11222344333333332 111111       111   1122344


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhH----HHhhhCCCCCCCceeEEEEeeecc
Q 030931           63 GLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPME----VCEGLGLFDLKNRKWHIQGTCALK  138 (169)
Q Consensus        63 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Sa~~  138 (169)
                      .++.+.|........ ...++.....    ...++++++||+|+.+......    +.+.+..   .....+++++||++
T Consensus       101 ~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~---~~~~~~~i~vSA~~  172 (188)
T d1puia_         101 GLVVLMDIRHPLKDL-DQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLA---FNGDVQVETFSSLK  172 (188)
T ss_dssp             EEEEEEETTSCCCHH-HHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---GCSCEEEEECBTTT
T ss_pred             EEEEeecccccchhH-HHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHh---hCCCCcEEEEeCCC
Confidence            555555554433222 2333433322    3678999999999865322222    2222211   12245799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 030931          139 GDGLYEGLDWLASTL  153 (169)
Q Consensus       139 ~~gi~~~~~~l~~~~  153 (169)
                      |.||+++++.|.+.+
T Consensus       173 g~Gid~L~~~i~~~~  187 (188)
T d1puia_         173 KQGVDKLRQKLDTWF  187 (188)
T ss_dssp             TBSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999887643

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=8.3e-12  Score=90.81  Aligned_cols=68  Identities=21%  Similarity=0.206  Sum_probs=54.9

Q ss_pred             CCEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           35 KNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        35 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      +.+.++++|||||..|.......++-+|++++|+|+.+.-.......|.... +    .+.|+++++||+|..
T Consensus        94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~-~----~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA  161 (341)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred             cceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHH-H----cCCCeEEEEECcccc
Confidence            4678999999999999999999999999999999998765555444443332 2    378999999999963

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1.2e-11  Score=92.20  Aligned_cols=146  Identities=12%  Similarity=-0.049  Sum_probs=80.9

Q ss_pred             ccccCCCCCceeeeecee-----eeeeeeeEE-----EEEEEE-CCEEEEEEEcCCCCCchh-----hHHhhccCCCEEE
Q 030931            2 LRVKQPYCTSCTLVKFYL-----LFLLLVRFN-----VEKVQY-KNVIFTVWDVGGQEKLRP-----LWRHYFNNTDGLI   65 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-----~~~~t~~~~-----~~~~~~-~~~~~~i~D~~G~~~~~~-----~~~~~~~~~~~ii   65 (169)
                      +++++|+|||||+|.+..     ......|+.     ...+.. +...+.+|||||......     +....+..+|.++
T Consensus        61 i~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l  140 (400)
T d1tq4a_          61 VTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFI  140 (400)
T ss_dssp             EEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEE
T ss_pred             EECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHHhhhhcceEEE
Confidence            578999999999997631     111111111     111222 334578999999654322     2233456789888


Q ss_pred             EEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC---------CCCHhHH--------HhhhCCCCCCCce
Q 030931           66 YVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG---------AMTPMEV--------CEGLGLFDLKNRK  128 (169)
Q Consensus        66 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~---------~~~~~~~--------~~~~~~~~~~~~~  128 (169)
                      ++.|..-.+  .+ .+++..+.+    .++|+++|.||+|...         ....+..        ...+...  ....
T Consensus       141 ~~~~~~~~~--~d-~~l~~~l~~----~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~--~~~~  211 (400)
T d1tq4a_         141 IISATRFKK--ND-IDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN--GIAE  211 (400)
T ss_dssp             EEESSCCCH--HH-HHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT--TCSS
T ss_pred             EecCCCCCH--HH-HHHHHHHHH----cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc--CCCC
Confidence            887753222  11 122333322    2689999999999521         0111111        1111100  1122


Q ss_pred             eEEEEeeecc--CCCHHHHHHHHHHHHHhh
Q 030931          129 WHIQGTCALK--GDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       129 ~~~~~~Sa~~--~~gi~~~~~~l~~~~~~~  156 (169)
                      .++|.+|+.+  ..|+.++.+.+.+.+.+.
T Consensus       212 ~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         212 PPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             CCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            3478888764  458999999988877654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.03  E-value=1.4e-10  Score=81.43  Aligned_cols=106  Identities=10%  Similarity=-0.038  Sum_probs=66.5

Q ss_pred             CccccCCCCCceeeeece--------eeeeeeeeEEEEEEEECCEEEEEEEcCCCCCch-------hhHHh--hccCCCE
Q 030931            1 MLRVKQPYCTSCTLVKFY--------LLFLLLVRFNVEKVQYKNVIFTVWDVGGQEKLR-------PLWRH--YFNNTDG   63 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~--------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~--~~~~~~~   63 (169)
                      +|++++|+|||||+|.+.        .....|..........++..+.++||||-....       .....  .....++
T Consensus        36 ~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~  115 (257)
T d1h65a_          36 LVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDV  115 (257)
T ss_dssp             EEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECE
T ss_pred             EEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCe
Confidence            477899999999999752        222334445556667789999999999953211       11111  2245789


Q ss_pred             EEEEEECCCh---hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCC
Q 030931           64 LIYVVDSLDR---ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKG  108 (169)
Q Consensus        64 ii~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  108 (169)
                      +++|++++..   ..-.....++...+...  --.++++|.||+|...
T Consensus       116 il~v~~~~~~r~~~~~~~~l~~l~~~fg~~--~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         116 LLYVDRLDAYRVDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSP  161 (257)
T ss_dssp             EEEEEESSCCCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCC
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHcchh--hhhCEEEEEECcccCC
Confidence            9999988642   11222233444443321  1357999999999864

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=1.3e-09  Score=78.71  Aligned_cols=108  Identities=12%  Similarity=0.060  Sum_probs=61.4

Q ss_pred             EEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCH----
Q 030931           37 VIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTP----  112 (169)
Q Consensus        37 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~----  112 (169)
                      +.+.+.+|.|...  . -..+...+|.+++|.++..-+.......-+-++         +=++|+||+|+......    
T Consensus       147 ~d~iliEtvG~gq--~-e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---------aDi~VvNKaD~~~~~~~~~~~  214 (327)
T d2p67a1         147 YDVVIVETVGVGQ--S-ETEVARMVDCFISLQIAGGGDDLQGIKKGLMEV---------ADLIVINKDDGDNHTNVAIAR  214 (327)
T ss_dssp             CSEEEEEEECCTT--H-HHHHHTTCSEEEEEECC------CCCCHHHHHH---------CSEEEECCCCTTCHHHHHHHH
T ss_pred             CCeEEEeeccccc--c-chhhhhccceEEEEecCCCchhhhhhchhhhcc---------ccEEEEEeecccchHHHHHHH
Confidence            4456666666531  1 123556789999998775443332222222222         34788999998753221    


Q ss_pred             hHHHhhhCCC--CCCCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          113 MEVCEGLGLF--DLKNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       113 ~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      .++...+...  .......+++.|||.+|+||+++.+.|.+.....
T Consensus       215 ~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l  260 (327)
T d2p67a1         215 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTAL  260 (327)
T ss_dssp             HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHHH
Confidence            2222222211  1123345799999999999999999998765543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.66  E-value=3.9e-09  Score=74.53  Aligned_cols=92  Identities=18%  Similarity=0.123  Sum_probs=64.8

Q ss_pred             hHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEE
Q 030931           53 LWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQ  132 (169)
Q Consensus        53 ~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (169)
                      .....++.+|.+++|+|+.++.+..+  ..+.++++     ++|+++|+||+|+.+....++..+.+.     ..+...+
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~~-----~Kp~IlVlNK~DLv~~~~~~~w~~~f~-----~~~~~~i   75 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRN--PMIEDILK-----NKPRIMLLNKADKADAAVTQQWKEHFE-----NQGIRSL   75 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHCS-----SSCEEEEEECGGGSCHHHHHHHHHHHH-----TTTCCEE
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHHc-----CCCeEEEEECccCCchHHHHHHHHHHH-----hcCCccc
Confidence            34557899999999999976654332  33455543     679999999999976433344444442     2334589


Q ss_pred             EeeeccCCCHHHHHHHHHHHHHhh
Q 030931          133 GTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       133 ~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                      .+|+.++.|+.++.+.+.+.+.+.
T Consensus        76 ~isa~~~~~~~~~~~~~~~~l~~~   99 (273)
T d1puja_          76 SINSVNGQGLNQIVPASKEILQEK   99 (273)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             eeecccCCCccccchhhhhhhhhh
Confidence            999999999998888777665553

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.26  E-value=7.1e-07  Score=60.63  Aligned_cols=101  Identities=25%  Similarity=0.144  Sum_probs=64.5

Q ss_pred             hccCCCEEEEEEECCCh-hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEee
Q 030931           57 YFNNTDGLIYVVDSLDR-ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTC  135 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  135 (169)
                      ...+.|.+++|+.+.++ -+...+..++-....    .++|.++|+||+||.+......+......   ....++++.+|
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~---~~~~~~v~~vS   79 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEI---YSGLYPIVKTS   79 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHH---HTTTSCEEECC
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhcc---cccceeEEEec
Confidence            45788999999988664 345555666554422    47899999999999653222222222211   11224689999


Q ss_pred             eccCCCHHHHHHHHHHHHHhhh--ccccccccccC
Q 030931          136 ALKGDGLYEGLDWLASTLKEMR--AAGYSSVGTSS  168 (169)
Q Consensus       136 a~~~~gi~~~~~~l~~~~~~~~--~~~~~~~~~~s  168 (169)
                      |+++.|++++.+++-    .+.  -.+.++.|+||
T Consensus        80 a~~~~g~~~L~~~l~----~kt~~~~G~SGVGKST  110 (225)
T d1u0la2          80 AKTGMGIEELKEYLK----GKISTMAGLSGVGKSS  110 (225)
T ss_dssp             TTTCTTHHHHHHHHS----SSEEEEECSTTSSHHH
T ss_pred             cccchhHhhHHHHhc----CCeEEEECCCCCCHHH
Confidence            999999999877663    221  23456666665

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.20  E-value=7.3e-08  Score=66.17  Aligned_cols=115  Identities=12%  Similarity=-0.061  Sum_probs=65.6

Q ss_pred             CEEEEEEEcCCCCCchhhHHh---h--ccCCCEEEEEEECCC---hhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPLWRH---Y--FNNTDGLIYVVDSLD---RERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~---~--~~~~~~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      ...+.+.|+||+..+......   .  ....+++++++|...   +..+............   .-..|.++++||+|+.
T Consensus        94 ~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~---~~~~~~ivvinK~D~~  170 (244)
T d1yrba1          94 ENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDLL  170 (244)
T ss_dssp             HCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGGC
T ss_pred             ccceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH---HhCCCceeeeeccccc
Confidence            345899999999764332221   1  124568899998753   3332222111111111   1267999999999987


Q ss_pred             CCCCHhHHH----------hhhCCCCC---------------CCceeEEEEeeeccCCCHHHHHHHHHHHH
Q 030931          108 GAMTPMEVC----------EGLGLFDL---------------KNRKWHIQGTCALKGDGLYEGLDWLASTL  153 (169)
Q Consensus       108 ~~~~~~~~~----------~~~~~~~~---------------~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~  153 (169)
                      .........          ..+.....               ....++++++||++|+|++++++.+.+..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         171 SEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             CHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            532111110          00000000               01235689999999999999999887753

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.18  E-value=1.1e-06  Score=62.40  Aligned_cols=71  Identities=18%  Similarity=0.150  Sum_probs=49.8

Q ss_pred             ccccCCCCCceeeeece--------eeeeeeeeEEEEEEEEC-----------------CEEEEEEEcCCCCC-------
Q 030931            2 LRVKQPYCTSCTLVKFY--------LLFLLLVRFNVEKVQYK-----------------NVIFTVWDVGGQEK-------   49 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~--------~~~~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~-------   49 (169)
                      |.++|.+|||||++.++        +.++.|+..+...+..+                 ...+++.|+||.-.       
T Consensus        15 ivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA~~g~G   94 (296)
T d1ni3a1          15 IVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVG   94 (296)
T ss_dssp             EEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSS
T ss_pred             EECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccccccccc
Confidence            56799999999999763        23455655555555443                 35789999998221       


Q ss_pred             chhhHHhhccCCCEEEEEEECCC
Q 030931           50 LRPLWRHYFNNTDGLIYVVDSLD   72 (169)
Q Consensus        50 ~~~~~~~~~~~~~~ii~v~d~~~   72 (169)
                      .....-..++.||++++|+|+.+
T Consensus        95 LGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          95 LGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             SCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cHHHHHHHhhccceeEEEEeccC
Confidence            23345556789999999999864

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.16  E-value=3.3e-07  Score=65.70  Aligned_cols=71  Identities=21%  Similarity=0.100  Sum_probs=38.9

Q ss_pred             ccccCCCCCceeeeecee-------eeeeeeeEEEEE----EE--------------------ECCEEEEEEEcCCCCCc
Q 030931            2 LRVKQPYCTSCTLVKFYL-------LFLLLVRFNVEK----VQ--------------------YKNVIFTVWDVGGQEKL   50 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~-------~~~~t~~~~~~~----~~--------------------~~~~~~~i~D~~G~~~~   50 (169)
                      |.+.|.+|||||+|.++.       .++.|+..+...    .+                    .....++++|+||.-..
T Consensus         5 lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pGli~g   84 (319)
T d1wxqa1           5 VVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPG   84 (319)
T ss_dssp             EEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-----
T ss_pred             EECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCCcccc
Confidence            568999999999997732       233343322211    11                    12267999999995321


Q ss_pred             ----hhhHH---hhccCCCEEEEEEECCC
Q 030931           51 ----RPLWR---HYFNNTDGLIYVVDSLD   72 (169)
Q Consensus        51 ----~~~~~---~~~~~~~~ii~v~d~~~   72 (169)
                          ..+..   ..++.+|++++|+|+.+
T Consensus        85 a~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          85 AHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             ----------CCCSSTTCSEEEEEEETTC
T ss_pred             hhcccchHHHHHHhhccceEEEEEecccc
Confidence                11222   34578999999999863

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.09  E-value=5.8e-07  Score=63.24  Aligned_cols=70  Identities=13%  Similarity=0.015  Sum_probs=47.6

Q ss_pred             ccccCCCCCceeeeece-------eeeeeeeeEEEEEEEEC-----------------CEEEEEEEcCCCCCchh-----
Q 030931            2 LRVKQPYCTSCTLVKFY-------LLFLLLVRFNVEKVQYK-----------------NVIFTVWDVGGQEKLRP-----   52 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~-------~~~~~t~~~~~~~~~~~-----------------~~~~~i~D~~G~~~~~~-----   52 (169)
                      |.+.|.+|||||+++++       +.++.|+..+...+..+                 ...++++|+||.-.-.+     
T Consensus         7 ivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~g~Gl   86 (278)
T d1jala1           7 IVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGL   86 (278)
T ss_dssp             EECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGG
T ss_pred             EECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcccCCCc
Confidence            56799999999999763       23455555555555443                 23588999999533222     


Q ss_pred             --hHHhhccCCCEEEEEEECC
Q 030931           53 --LWRHYFNNTDGLIYVVDSL   71 (169)
Q Consensus        53 --~~~~~~~~~~~ii~v~d~~   71 (169)
                        ..-..++.||++++|+|+.
T Consensus        87 g~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          87 GNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             TCCHHHHHHTCSEEEEEEECS
T ss_pred             cHHHHHHHHhccceEEEeecc
Confidence              2345678999999999874

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.95  E-value=3.8e-06  Score=59.37  Aligned_cols=68  Identities=15%  Similarity=0.137  Sum_probs=43.5

Q ss_pred             EEEEEEcCCCCC-------------chhhHHhhccCCCEE-EEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 030931           38 IFTVWDVGGQEK-------------LRPLWRHYFNNTDGL-IYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANK  103 (169)
Q Consensus        38 ~~~i~D~~G~~~-------------~~~~~~~~~~~~~~i-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK  103 (169)
                      .+.++|+||-..             ...+...|+...+.+ ++|.+.....+-.....+.+.+.    ....++++|.||
T Consensus       126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~----~~~~r~i~Vltk  201 (299)
T d2akab1         126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVITK  201 (299)
T ss_dssp             SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEEEEC
T ss_pred             CeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhC----cCCCceeeEEec
Confidence            488999999432             123455677777755 45666654444445555666552    235689999999


Q ss_pred             CCCCCC
Q 030931          104 QDMKGA  109 (169)
Q Consensus       104 ~Dl~~~  109 (169)
                      +|..+.
T Consensus       202 ~D~~~~  207 (299)
T d2akab1         202 LDLMDE  207 (299)
T ss_dssp             GGGSCT
T ss_pred             cccccc
Confidence            998654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.92  E-value=6.8e-07  Score=60.93  Aligned_cols=88  Identities=11%  Similarity=0.094  Sum_probs=58.3

Q ss_pred             hccCCCEEEEEEECCCh-hhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHhHHHhhhCCCCCCCceeEEEEee
Q 030931           57 YFNNTDGLIYVVDSLDR-ERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTC  135 (169)
Q Consensus        57 ~~~~~~~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  135 (169)
                      ...+.|.+++|+++.++ .+...+..++-....    .+++.++|+||+||.+....++....+.. .....+++++.+|
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~-~y~~~g~~v~~~S   81 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAE-DYRNIGYDVYLTS   81 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHH-HHHHHTCCEEECC
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHHHHHHHHHHHH-HHhhccccceeee
Confidence            45789999999998664 456666666655522    47899999999999754222221111110 0022345699999


Q ss_pred             eccCCCHHHHHHHH
Q 030931          136 ALKGDGLYEGLDWL  149 (169)
Q Consensus       136 a~~~~gi~~~~~~l  149 (169)
                      |+++.|++++..++
T Consensus        82 a~~~~gl~~L~~~l   95 (231)
T d1t9ha2          82 SKDQDSLADIIPHF   95 (231)
T ss_dssp             HHHHTTCTTTGGGG
T ss_pred             cCChhHHHHHHHhh
Confidence            99999998877655

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.91  E-value=5.5e-06  Score=58.76  Aligned_cols=68  Identities=19%  Similarity=0.168  Sum_probs=43.1

Q ss_pred             EEEEEEEcCCCCC-------------chhhHHhhccCCCEEEEEE-ECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 030931           37 VIFTVWDVGGQEK-------------LRPLWRHYFNNTDGLIYVV-DSLDRERIGKAKQEFQAIIKDPFMLNSVILVFAN  102 (169)
Q Consensus        37 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~ii~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~n  102 (169)
                      ..+.++|+||...             ...+...|++.++++++++ +......-.....+.+.+.    .....+++|.|
T Consensus       131 ~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~----~~~~r~i~Vit  206 (306)
T d1jwyb_         131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD----PEGKRTIGVIT  206 (306)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC----SSCSSEEEEEE
T ss_pred             CCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhC----cCCCeEEEEEe
Confidence            4588999999543             1245667888999877666 4332222223344555552    13468999999


Q ss_pred             CCCCCC
Q 030931          103 KQDMKG  108 (169)
Q Consensus       103 K~Dl~~  108 (169)
                      |+|...
T Consensus       207 k~D~~~  212 (306)
T d1jwyb_         207 KLDLMD  212 (306)
T ss_dssp             CTTSSC
T ss_pred             cccccc
Confidence            999864

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.86  E-value=2.2e-05  Score=56.18  Aligned_cols=109  Identities=12%  Similarity=0.061  Sum_probs=66.5

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCCCCHh--
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPM--  113 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--  113 (169)
                      ++.+-|.+|.|.-.-..   .....+|..++|......+......         ...-..+=++|.||+|+.+.....  
T Consensus       143 g~d~iiiETVG~gq~e~---~~~~~~D~~v~v~~p~~GD~iQ~~k---------~gilE~aDi~vvNKaD~~~~~~~~~~  210 (323)
T d2qm8a1         143 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIK---------KGIFELADMIAVNKADDGDGERRASA  210 (323)
T ss_dssp             TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CC---------TTHHHHCSEEEEECCSTTCCHHHHHH
T ss_pred             CCCeEEEeehhhhhhhh---hhhcccceEEEEeeccchhhhhhhh---------hhHhhhhheeeEeccccccchHHHHH
Confidence            56788889888643222   2345699999999886654333211         111134568999999987653221  


Q ss_pred             ---HHHhhhCCCCC--CCceeEEEEeeeccCCCHHHHHHHHHHHHHhh
Q 030931          114 ---EVCEGLGLFDL--KNRKWHIQGTCALKGDGLYEGLDWLASTLKEM  156 (169)
Q Consensus       114 ---~~~~~~~~~~~--~~~~~~~~~~Sa~~~~gi~~~~~~l~~~~~~~  156 (169)
                         +....+.....  .....+++.+||++|+|++++.+++.+.....
T Consensus       211 ~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~  258 (323)
T d2qm8a1         211 AASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKL  258 (323)
T ss_dssp             HHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHH
Confidence               12222222211  22345699999999999999999998765544

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00042  Score=46.64  Aligned_cols=44  Identities=20%  Similarity=0.219  Sum_probs=26.7

Q ss_pred             CCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCCC
Q 030931           60 NTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGA  109 (169)
Q Consensus        60 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  109 (169)
                      ..+++|.|+|.............+...+...      =++++||+|+.+.
T Consensus       121 ~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~A------D~ivlNK~Dl~~~  164 (222)
T d1nija1         121 LLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAGE  164 (222)
T ss_dssp             EEEEEEEEEETTTHHHHHHHCHHHHHHHHTC------SEEEEECTTTCSC
T ss_pred             cccchhhhhhhhhhhhhhhhhHHHHHHHHhC------CcccccccccccH
Confidence            3588899999976544333223333333322      3578999998653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=95.90  E-value=0.00035  Score=48.47  Aligned_cols=47  Identities=9%  Similarity=-0.041  Sum_probs=27.4

Q ss_pred             CccccCCCCCceeeeeceeeeeeeee----EE--EEEEEECCEEEEEEEcCCCC
Q 030931            1 MLRVKQPYCTSCTLVKFYLLFLLLVR----FN--VEKVQYKNVIFTVWDVGGQE   48 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~~~t~~----~~--~~~~~~~~~~~~i~D~~G~~   48 (169)
                      ++.+-+.+|||||+|++.......++    .+  ...+. .+-.+.+.||||.-
T Consensus       116 ~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~-~~~~~~l~DTPGi~  168 (273)
T d1puja_         116 LIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK-VGKELELLDTPGIL  168 (273)
T ss_dssp             EEEESTTSSHHHHHHHHHTSCCC------------CCEE-ETTTEEEEECCCCC
T ss_pred             EEEecCccchhhhhhhhhccceEEECCcccccccceEEE-CCCCeEEecCCCcc
Confidence            35678999999999987332222222    11  11122 23448999999964

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.88  E-value=0.00029  Score=47.45  Aligned_cols=49  Identities=14%  Similarity=-0.046  Sum_probs=27.3

Q ss_pred             ccccCCCCCceeeeeceee-eeeeeeEEEE------------EEEECCEEEEEEEcCCCCCch
Q 030931            2 LRVKQPYCTSCTLVKFYLL-FLLLVRFNVE------------KVQYKNVIFTVWDVGGQEKLR   51 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-~~~t~~~~~~------------~~~~~~~~~~i~D~~G~~~~~   51 (169)
                      +.+-.|+|||||+|.+.+. ...|..+...            -+.... .-.++||||-..+.
T Consensus       100 ~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~-gg~iiDTPG~r~~~  161 (225)
T d1u0la2         100 MAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDF-GGYVVDTPGFANLE  161 (225)
T ss_dssp             EECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTT-SCEEESSCSSTTCC
T ss_pred             EECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECC-CcEEEeCCcccccc
Confidence            5678999999999987432 2333332211            122211 14689999976543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.81  E-value=0.00062  Score=45.96  Aligned_cols=48  Identities=15%  Similarity=-0.057  Sum_probs=25.5

Q ss_pred             ccccCCCCCceeeeeceee-eeeeeeEEEEE------------EEECCEEEEEEEcCCCCCch
Q 030931            2 LRVKQPYCTSCTLVKFYLL-FLLLVRFNVEK------------VQYKNVIFTVWDVGGQEKLR   51 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~-~~~t~~~~~~~------------~~~~~~~~~i~D~~G~~~~~   51 (169)
                      +++-.|+|||||+|.+.+. ...|..+....            +...+  -.+.||||-..+.
T Consensus       102 l~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~g--g~iiDTPG~r~~~  162 (231)
T d1t9ha2         102 FAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSG--GLVADTPGFSSLE  162 (231)
T ss_dssp             EEESHHHHHHHHHHHHCC-------------------CCCCCEEEETT--EEEESSCSCSSCC
T ss_pred             EECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCC--CEEEECCcccccc
Confidence            5678899999999987433 22222221110            12222  2478999987654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=94.78  E-value=0.0034  Score=41.59  Aligned_cols=64  Identities=14%  Similarity=0.151  Sum_probs=36.9

Q ss_pred             CEEEEEEEcCCCCCchhhHH----hh--ccCCCEEEEEEECCChh-hHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPLWR----HY--FNNTDGLIYVVDSLDRE-RIGKAKQEFQAIIKDPFMLNSVILVFANKQDMK  107 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~----~~--~~~~~~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  107 (169)
                      ...+.++||+|.........    .+  ....+-+++|.|.+... ..+.+....+.+ .       +-=++.+|.|-.
T Consensus        92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~-~-------~~~~I~TKlDe~  162 (207)
T d1ls1a2          92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV-G-------VTGLVLTKLDGD  162 (207)
T ss_dssp             TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT-C-------CCEEEEECGGGC
T ss_pred             cCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC-C-------CCeeEEeecCcc
Confidence            45789999999665433211    11  23578899999986543 233222222222 1       233789999953

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.016  Score=39.94  Aligned_cols=48  Identities=13%  Similarity=-0.071  Sum_probs=33.4

Q ss_pred             ccccCCCCCceeeeece----------eeeeeeeeEEEEEEEE---CCEEEEEEEcCCCCC
Q 030931            2 LRVKQPYCTSCTLVKFY----------LLFLLLVRFNVEKVQY---KNVIFTVWDVGGQEK   49 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~----------~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~   49 (169)
                      +.+.+.+|||+|+|++.          .....|.|+-......   ....+.++||.|-..
T Consensus        37 i~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          37 IVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             EEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             EECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence            46789999999999751          1223566765544433   567899999999543

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.67  E-value=0.34  Score=31.50  Aligned_cols=67  Identities=10%  Similarity=0.012  Sum_probs=45.8

Q ss_pred             CEEEEEEEcCCCCCchhhHHhhccCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEE-EEEeCCCCCCC
Q 030931           36 NVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVIL-VFANKQDMKGA  109 (169)
Q Consensus        36 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~~  109 (169)
                      .+.+.++|+++...  ......+..+|.++++... +..++....+.+..+.+    .+.|++ ++.|+.+..+.
T Consensus       111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~~  178 (237)
T d1g3qa_         111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSDR  178 (237)
T ss_dssp             GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCTT
T ss_pred             cCCEEEEccccccc--ccchhhhhhhhcccccccc-cceecchhhHHHHHHhh----hhhhhhhhhhcccccccc
Confidence            56789999998753  3344456789999999976 45566666665554432    356665 88999986543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.00  E-value=0.0099  Score=39.00  Aligned_cols=25  Identities=8%  Similarity=-0.077  Sum_probs=21.6

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        32 l~G~NGsGKSTLl~~i~gl~~p~~G   56 (200)
T d1sgwa_          32 FHGPNGIGKTTLLKTISTYLKPLKG   56 (200)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCChHHHHHHHHhcccccCCC
Confidence            5678999999999988887888887

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=90.62  E-value=0.0091  Score=36.75  Aligned_cols=17  Identities=12%  Similarity=-0.249  Sum_probs=14.2

Q ss_pred             ccccCCCCCceeeeece
Q 030931            2 LRVKQPYCTSCTLVKFY   18 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~   18 (169)
                      |.+.+|||||||.+++.
T Consensus         7 i~G~pGsGKTTla~~L~   23 (152)
T d1ly1a_           7 TIGCPGSGKSTWAREFI   23 (152)
T ss_dssp             EECCTTSSHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHH
Confidence            45789999999998763

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.61  E-value=0.0074  Score=38.20  Aligned_cols=22  Identities=5%  Similarity=-0.162  Sum_probs=16.0

Q ss_pred             ccccCCCCCceeeeeceeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLL   23 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~   23 (169)
                      |.+.+|+|||||++.+.....+
T Consensus         5 I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           5 ITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EECCTTSSHHHHHHHHHHHHGG
T ss_pred             EECCCCcHHHHHHHHHHhcCCC
Confidence            4568999999999976443333

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=89.72  E-value=0.015  Score=39.28  Aligned_cols=25  Identities=4%  Similarity=-0.144  Sum_probs=20.2

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|||||||++-+..-+.|+.|
T Consensus        34 IvG~sGsGKSTLl~ll~gl~~p~~G   58 (241)
T d2pmka1          34 IVGRSGSGKSTLTKLIQRFYIPENG   58 (241)
T ss_dssp             EECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCCHHHHHHHHHhcCCCCCC
Confidence            5678999999999977666667766

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=89.63  E-value=0.015  Score=36.31  Aligned_cols=16  Identities=13%  Similarity=-0.053  Sum_probs=13.5

Q ss_pred             cccCCCCCceeeeece
Q 030931            3 RVKQPYCTSCTLVKFY   18 (169)
Q Consensus         3 ~~~~~~~Ktsll~~f~   18 (169)
                      -+-.|||||||++++.
T Consensus         8 tG~~GSGKTTL~~~L~   23 (170)
T d1np6a_           8 AAWSGTGKTTLLKKLI   23 (170)
T ss_dssp             ECCTTSCHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHH
Confidence            3578999999999874

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.14  E-value=0.021  Score=38.91  Aligned_cols=25  Identities=4%  Similarity=-0.208  Sum_probs=20.1

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|||||||++-+..-+.|+.|
T Consensus        49 ivG~sGsGKSTLl~ll~gl~~p~~G   73 (255)
T d2hyda1          49 FVGMSGGGKSTLINLIPRFYDVTSG   73 (255)
T ss_dssp             EECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred             EECCCCCcHHHHHHHHHhcCCcccc
Confidence            5678999999999977666666666

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.99  E-value=0.018  Score=38.57  Aligned_cols=25  Identities=12%  Similarity=-0.274  Sum_probs=20.6

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|||||||++-+..-..|+.|
T Consensus        36 iiG~sGsGKSTLl~~i~gl~~p~sG   60 (230)
T d1l2ta_          36 IMGPSGSGKSTMLNIIGCLDKPTEG   60 (230)
T ss_dssp             EECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCCcchhhHhccCCCCCCcc
Confidence            5678999999999977766677777

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=88.85  E-value=0.012  Score=37.08  Aligned_cols=20  Identities=15%  Similarity=0.096  Sum_probs=16.2

Q ss_pred             ccccCCCCCceeeeeceeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLF   21 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~   21 (169)
                      +.|.+|+|||||.+++...+
T Consensus        12 i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2          12 ILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EECCTTSHHHHHHHHHHHHT
T ss_pred             EECCCCCCHHHHHHHHHHHh
Confidence            46789999999999875543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=88.74  E-value=0.016  Score=36.14  Aligned_cols=19  Identities=11%  Similarity=-0.092  Sum_probs=15.2

Q ss_pred             ccccCCCCCceeeeeceee
Q 030931            2 LRVKQPYCTSCTLVKFYLL   20 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~   20 (169)
                      |.+.+||||||+.+++...
T Consensus         7 i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           7 ITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EECSTTSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            5579999999999877443

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=88.69  E-value=0.019  Score=38.66  Aligned_cols=25  Identities=12%  Similarity=-0.227  Sum_probs=20.4

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|||||||++-+..-..|+.|
T Consensus        36 iiG~sGsGKSTLl~~i~Gl~~p~sG   60 (240)
T d3dhwc1          36 VIGASGAGKSTLIRCVNLLERPTEG   60 (240)
T ss_dssp             EEESTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCCHHHHHHHHcCCccccCC
Confidence            5678999999999987666667766

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=88.67  E-value=0.016  Score=39.08  Aligned_cols=25  Identities=4%  Similarity=-0.153  Sum_probs=20.1

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|||||||++-+..-+.|+.|
T Consensus        33 ivG~sGsGKSTLl~ll~gl~~p~~G   57 (242)
T d1mv5a_          33 FAGPSGGGKSTIFSLLERFYQPTAG   57 (242)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred             EECCCCCCHHHHHHHHHHhhCCCCC
Confidence            5678999999999977666667666

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.67  E-value=0.02  Score=38.89  Aligned_cols=25  Identities=12%  Similarity=-0.146  Sum_probs=20.6

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|||||||++-+..-+.|+.|
T Consensus        45 ivG~sGsGKSTLl~li~gl~~p~~G   69 (251)
T d1jj7a_          45 LVGPNGSGKSTVAALLQNLYQPTGG   69 (251)
T ss_dssp             EECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCcHHHHHHHHhcccCCCcC
Confidence            5678999999999977777777766

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.58  E-value=0.019  Score=35.96  Aligned_cols=16  Identities=6%  Similarity=-0.091  Sum_probs=13.4

Q ss_pred             cccCCCCCceeeeece
Q 030931            3 RVKQPYCTSCTLVKFY   18 (169)
Q Consensus         3 ~~~~~~~Ktsll~~f~   18 (169)
                      -+..|||||||+.++.
T Consensus         7 ~G~~gSGKTTli~~l~   22 (165)
T d1xjca_           7 VGYKHSGKTTLMEKWV   22 (165)
T ss_dssp             ECCTTSSHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHH
Confidence            4578999999999763

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.59  E-value=0.024  Score=35.60  Aligned_cols=16  Identities=13%  Similarity=-0.070  Sum_probs=13.7

Q ss_pred             ccccCCCCCceeeeec
Q 030931            2 LRVKQPYCTSCTLVKF   17 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f   17 (169)
                      |-+.+|+|||+|+.++
T Consensus         6 ItG~~GtGKTtl~~~i   21 (189)
T d2i3ba1           6 LTGPPGVGKTTLIHKA   21 (189)
T ss_dssp             EESCCSSCHHHHHHHH
T ss_pred             EECCCCCcHHHHHHHH
Confidence            4568999999999976

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.31  E-value=0.025  Score=38.05  Aligned_cols=25  Identities=16%  Similarity=-0.218  Sum_probs=20.3

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        37 liGpsGaGKSTLl~~i~Gl~~p~sG   61 (239)
T d1v43a3          37 LLGPSGCGKTTTLRMIAGLEEPTEG   61 (239)
T ss_dssp             EECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EECCCCChHHHHHHHHHcCCCCCCC
Confidence            5678999999999977666667766

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.31  E-value=0.025  Score=37.88  Aligned_cols=25  Identities=12%  Similarity=-0.184  Sum_probs=18.8

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|||||||++-+..-..|+.|
T Consensus        31 liGpsGsGKSTLl~~i~Gl~~p~sG   55 (232)
T d2awna2          31 FVGPSGCGKSTLLRMIAGLETITSG   55 (232)
T ss_dssp             EECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EECCCCChHHHHHHHHhcCCCCCCC
Confidence            5678999999999966555555555

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.29  E-value=0.026  Score=38.97  Aligned_cols=25  Identities=4%  Similarity=-0.202  Sum_probs=20.2

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+...+.|+.|
T Consensus        67 ivG~nGsGKSTLl~~i~Gl~~p~~G   91 (281)
T d1r0wa_          67 ITGSTGSGKTSLLMLILGELEASEG   91 (281)
T ss_dssp             EEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EECCCCChHHHHHHHHhCCCcCCCc
Confidence            5678999999999977666666666

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.18  E-value=0.025  Score=38.38  Aligned_cols=25  Identities=8%  Similarity=-0.145  Sum_probs=19.6

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |.+..|||||||++-+..-+.|+.|
T Consensus        46 ivG~sGsGKSTLl~ll~gl~~p~~G   70 (253)
T d3b60a1          46 LVGRSGSGKSTIASLITRFYDIDEG   70 (253)
T ss_dssp             EEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred             EECCCCChHHHHHHHHhcccCCCcc
Confidence            5678999999999976666666665

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=87.17  E-value=0.028  Score=37.83  Aligned_cols=25  Identities=16%  Similarity=-0.125  Sum_probs=20.5

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+.....|+.|
T Consensus        33 lvG~nGaGKSTLl~~l~G~~~p~~G   57 (238)
T d1vpla_          33 LIGPNGAGKTTTLRIISTLIKPSSG   57 (238)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCCHHHHHHHHhcCCCCCCC
Confidence            5678899999999987777777766

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=87.07  E-value=0.027  Score=37.96  Aligned_cols=25  Identities=16%  Similarity=-0.230  Sum_probs=20.4

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        34 liG~sGaGKSTll~~i~gl~~p~sG   58 (240)
T d1g2912          34 LLGPSGCGKTTTLRMIAGLEEPSRG   58 (240)
T ss_dssp             EECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EECCCCChHHHHHHHHhcCCCCCCC
Confidence            5678999999999977666667766

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.02  E-value=0.027  Score=37.93  Aligned_cols=25  Identities=12%  Similarity=-0.289  Sum_probs=20.5

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        29 liGpnGaGKSTll~~i~Gl~~p~~G   53 (240)
T d2onka1          29 LLGPTGAGKSVFLELIAGIVKPDRG   53 (240)
T ss_dssp             EECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred             EECCCCChHHHHHHHHHcCCCCCce
Confidence            5678899999999987776677766

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.71  E-value=0.025  Score=35.97  Aligned_cols=17  Identities=6%  Similarity=-0.267  Sum_probs=14.3

Q ss_pred             ccccCCCCCceeeeece
Q 030931            2 LRVKQPYCTSCTLVKFY   18 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~   18 (169)
                      +.+-+||||||+..++.
T Consensus        19 l~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          19 AVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             EECCTTSSHHHHHHHHT
T ss_pred             EECCCCCCHHHHHHHHH
Confidence            56689999999998773

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.09  E-value=0.029  Score=36.29  Aligned_cols=42  Identities=7%  Similarity=0.026  Sum_probs=24.5

Q ss_pred             cCCCEEEEEEECCChhhHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 030931           59 NNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQD  105 (169)
Q Consensus        59 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piivv~nK~D  105 (169)
                      ....+.++++|.++..  ...++++.++.+.   .+.+++++.++++
T Consensus        82 ~~~~~~~vi~d~~~~~--~~~r~~~~~~~~~---~~~~~~~~~~~~~  123 (213)
T d1bifa1          82 SEEGGHVAVFDATNTT--RERRAMIFNFGEQ---NGYKTFFVESICV  123 (213)
T ss_dssp             HTTCCSEEEEESCCCS--HHHHHHHHHHHHH---HTCEEEEEEECCC
T ss_pred             HhcCCCEEEeecCCcc--HHHHHHHHHHHHh---cCCeEEEEEeecc
Confidence            4456777888987642  2223333343332   2567888888876

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=84.81  E-value=0.035  Score=34.51  Aligned_cols=19  Identities=5%  Similarity=-0.239  Sum_probs=14.9

Q ss_pred             ccccCCCCCceeeeeceee
Q 030931            2 LRVKQPYCTSCTLVKFYLL   20 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~   20 (169)
                      |.+-+||||||+.+++...
T Consensus         9 i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           9 LTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             EECSTTSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            3478999999999877443

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=84.72  E-value=0.044  Score=36.86  Aligned_cols=25  Identities=16%  Similarity=-0.133  Sum_probs=20.6

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++-.|+|||||++-+..-..|+.|
T Consensus        37 liGpnGaGKSTl~~~i~Gl~~p~~G   61 (240)
T d1ji0a_          37 LIGANGAGKTTTLSAIAGLVRAQKG   61 (240)
T ss_dssp             EECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCcHHHHHHHHhCCCCCCcc
Confidence            5678999999999987777777766

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=84.31  E-value=0.04  Score=36.44  Aligned_cols=17  Identities=6%  Similarity=-0.183  Sum_probs=13.8

Q ss_pred             ccccCCCCCceeeeece
Q 030931            2 LRVKQPYCTSCTLVKFY   18 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~   18 (169)
                      +.+-.|||||||++++.
T Consensus         5 v~G~~GsGKTTLl~~ll   21 (244)
T d1yrba1           5 FVGTAGSGKTTLTGEFG   21 (244)
T ss_dssp             EECSTTSSHHHHHHHHH
T ss_pred             EEcCCCCcHHHHHHHHH
Confidence            34567999999999874

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=83.58  E-value=0.028  Score=36.01  Aligned_cols=20  Identities=0%  Similarity=-0.160  Sum_probs=15.9

Q ss_pred             ccccCCCCCceeeeeceeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLF   21 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~   21 (169)
                      |.+.+||||||+.+.+...+
T Consensus         8 i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           8 ISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             EEESTTSSHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHH
Confidence            56799999999998764444

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=83.57  E-value=0.033  Score=35.90  Aligned_cols=21  Identities=5%  Similarity=-0.113  Sum_probs=17.2

Q ss_pred             CccccCCCCCceeeeeceeee
Q 030931            1 MLRVKQPYCTSCTLVKFYLLF   21 (169)
Q Consensus         1 ~~~~~~~~~Ktsll~~f~~~~   21 (169)
                      +|++.+||||||+..++.+.+
T Consensus        10 iliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1          10 AIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEECCTTSSHHHHHHHHHHHB
T ss_pred             EEECCCCCCHHHHHHHHHHHH
Confidence            367899999999999876654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.47  E-value=0.054  Score=36.72  Aligned_cols=25  Identities=4%  Similarity=-0.269  Sum_probs=20.1

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++-.|+|||||++-+.....|+.|
T Consensus        35 liG~nGaGKSTLl~~i~Gl~~p~~G   59 (254)
T d1g6ha_          35 IIGPNGSGKSTLINVITGFLKADEG   59 (254)
T ss_dssp             EECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCcHHHHHHHHHCCCcCCCc
Confidence            4667899999999987666667766

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=83.38  E-value=0.029  Score=36.03  Aligned_cols=20  Identities=5%  Similarity=-0.170  Sum_probs=16.5

Q ss_pred             ccccCCCCCceeeeeceeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLF   21 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~   21 (169)
                      |.+.+||||||+.+++.+.+
T Consensus        11 i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_          11 VLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             EEESTTSSHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHH
Confidence            56799999999999886554

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=83.36  E-value=0.029  Score=35.70  Aligned_cols=20  Identities=5%  Similarity=-0.170  Sum_probs=16.3

Q ss_pred             ccccCCCCCceeeeeceeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLF   21 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~   21 (169)
                      |.+.+||||||+...+...+
T Consensus         5 i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           5 LMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EECSTTSSHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHH
Confidence            56799999999998775544

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.05  E-value=0.023  Score=38.35  Aligned_cols=25  Identities=4%  Similarity=-0.277  Sum_probs=20.4

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|||||||++-+..-..|+.|
T Consensus        36 iiG~sGsGKSTll~~i~gl~~p~~G   60 (242)
T d1oxxk2          36 ILGPSGAGKTTFMRIIAGLDVPSTG   60 (242)
T ss_dssp             EECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred             EECCCCCcHHHHHHHHHcCcCCCCc
Confidence            5678999999999977666667766

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.77  E-value=0.075  Score=33.41  Aligned_cols=20  Identities=10%  Similarity=-0.104  Sum_probs=16.0

Q ss_pred             ccccCCCCCceeeeeceeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLF   21 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~   21 (169)
                      |.+.+||||||+...+...+
T Consensus         5 i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           5 LMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EECSTTSSHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHH
Confidence            67899999999998764443

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=82.59  E-value=0.033  Score=37.20  Aligned_cols=25  Identities=4%  Similarity=-0.282  Sum_probs=20.7

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++..|+|||||++-+..-..|+.|
T Consensus        31 liGpsGaGKSTll~~l~Gl~~p~sG   55 (229)
T d3d31a2          31 ILGPTGAGKTLFLELIAGFHVPDSG   55 (229)
T ss_dssp             EECCCTHHHHHHHHHHHTSSCCSEE
T ss_pred             EECCCCCcHHHHHHHHhcCcCCCCC
Confidence            5678999999999988777777766

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=82.22  E-value=0.13  Score=35.97  Aligned_cols=16  Identities=0%  Similarity=-0.224  Sum_probs=13.3

Q ss_pred             cccCCCCCceeeeece
Q 030931            3 RVKQPYCTSCTLVKFY   18 (169)
Q Consensus         3 ~~~~~~~Ktsll~~f~   18 (169)
                      -+.+|||||||++.+.
T Consensus       172 ~G~tgSGKTT~l~al~  187 (323)
T d1g6oa_         172 CGGTGSGKTTYIKSIM  187 (323)
T ss_dssp             EESTTSSHHHHHHHHG
T ss_pred             EeeccccchHHHHHHh
Confidence            4589999999999763

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.81  E-value=0.036  Score=35.17  Aligned_cols=20  Identities=15%  Similarity=-0.094  Sum_probs=16.2

Q ss_pred             ccccCCCCCceeeeeceeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLF   21 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~   21 (169)
                      |.+.+||||||+..++...+
T Consensus         5 i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           5 LLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EECCTTSSHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHH
Confidence            56899999999999775444

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=81.72  E-value=0.055  Score=33.61  Aligned_cols=18  Identities=11%  Similarity=-0.186  Sum_probs=14.6

Q ss_pred             ccccCCCCCceeeeecee
Q 030931            2 LRVKQPYCTSCTLVKFYL   19 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~   19 (169)
                      |.+-+||||||+.+.+..
T Consensus        11 l~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_          11 LMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EECSTTSCHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            457899999999997643

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.66  E-value=0.039  Score=35.48  Aligned_cols=20  Identities=5%  Similarity=-0.150  Sum_probs=16.3

Q ss_pred             ccccCCCCCceeeeeceeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLF   21 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~   21 (169)
                      |++.+||||||+..++.+.+
T Consensus        13 l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_          13 VVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             EEECTTSSHHHHHHHHHHHT
T ss_pred             EECCCCCCHHHHHHHHHHHh
Confidence            57899999999999875544

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=81.57  E-value=0.037  Score=35.05  Aligned_cols=19  Identities=5%  Similarity=-0.316  Sum_probs=15.4

Q ss_pred             ccccCCCCCceeeeeceee
Q 030931            2 LRVKQPYCTSCTLVKFYLL   20 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~   20 (169)
                      |++.+||||||+..++...
T Consensus         5 i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           5 LLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEESTTSSHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHH
Confidence            5789999999999876443

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=81.56  E-value=0.088  Score=32.64  Aligned_cols=19  Identities=0%  Similarity=-0.258  Sum_probs=15.5

Q ss_pred             ccccCCCCCceeeeeceee
Q 030931            2 LRVKQPYCTSCTLVKFYLL   20 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~   20 (169)
                      |.+-+||||||+.+.+...
T Consensus        10 i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_          10 ITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             EECSTTSSHHHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHHH
Confidence            5678999999999977544

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.41  E-value=0.071  Score=33.81  Aligned_cols=15  Identities=0%  Similarity=-0.263  Sum_probs=13.0

Q ss_pred             ccCCCCCceeeeece
Q 030931            4 VKQPYCTSCTLVKFY   18 (169)
Q Consensus         4 ~~~~~~Ktsll~~f~   18 (169)
                      +.+|||||||.+++.
T Consensus        29 G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          29 GLSRSGKTTLANQLS   43 (198)
T ss_dssp             ECTTSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
Confidence            489999999999874

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.28  E-value=0.072  Score=36.16  Aligned_cols=25  Identities=12%  Similarity=-0.223  Sum_probs=19.6

Q ss_pred             ccccCCCCCceeeeeceeeeeeeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLFLLLVR   26 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~~~t~~   26 (169)
                      |++-.|||||||++-+..-..|+.|
T Consensus        33 iiG~sGsGKSTLl~~i~Gl~~p~~G   57 (258)
T d1b0ua_          33 IIGSSGSGKSTFLRCINFLEKPSEG   57 (258)
T ss_dssp             EECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred             EECCCCCcHHHHHHHHHcCccCCCC
Confidence            4567899999999977666666666

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.18  E-value=0.039  Score=35.05  Aligned_cols=20  Identities=10%  Similarity=-0.134  Sum_probs=16.3

Q ss_pred             ccccCCCCCceeeeeceeee
Q 030931            2 LRVKQPYCTSCTLVKFYLLF   21 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f~~~~   21 (169)
                      |++.+||||||+...+.+.+
T Consensus         7 l~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           7 LIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EECCTTSSHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHh
Confidence            56899999999999875543

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=80.98  E-value=0.064  Score=35.87  Aligned_cols=16  Identities=6%  Similarity=-0.278  Sum_probs=13.9

Q ss_pred             ccccCCCCCceeeeec
Q 030931            2 LRVKQPYCTSCTLVKF   17 (169)
Q Consensus         2 ~~~~~~~~Ktsll~~f   17 (169)
                      |.+..|+|||||+.++
T Consensus        34 i~G~~G~GKTsLl~~~   49 (283)
T d2fnaa2          34 VLGLRRTGKSSIIKIG   49 (283)
T ss_dssp             EEESTTSSHHHHHHHH
T ss_pred             EEcCCCCcHHHHHHHH
Confidence            4578999999999976

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.86  E-value=0.086  Score=33.66  Aligned_cols=17  Identities=12%  Similarity=-0.117  Sum_probs=14.2

Q ss_pred             ccCCCCCceeeeeceee
Q 030931            4 VKQPYCTSCTLVKFYLL   20 (169)
Q Consensus         4 ~~~~~~Ktsll~~f~~~   20 (169)
                      |..||||||+++.+...
T Consensus        16 G~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1          16 GNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CSTTSCHHHHHHTTGGG
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            58899999999987543