Citrus Sinensis ID: 030942

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MGAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKPHFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGKAKDELITIYCPFMGLAVLAFLRGLVGQSSKTTSFNIGKRPALARKKKA
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHcc
Coil and Loop (DISEMBL)
MGAFVKLIDAILFVFFVAIALAVPlidaqaclpvnfyppflvdlktwytdeygdylftekpHFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGKAKDELITIYCPFMGLAVLAFLRGLvgqsskttsfnigkrpalarkkka
Flexible Loop (DISEMBL)
MGAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKPHFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGKAKDELITIYCPFMGLAVLAFLRGLVGqsskttsfnigkrpalarkkka
Low Complexity Region (SEG)
MGAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKPHFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGKAKDELITIYCPFMGLAVLAFLRGLVGQSSKTTSFNIGKRPALARKKKA
Disordered region (IsUnstruct)
**AFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKPHFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGKAKDELITIYCPFMGLAVLAFLRGLVG**********************
Disordered Region (DISOPRED)
****VKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKPHFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGKAKDELITIYCPFMGLAVLAFLRGLVG**********************
Disordered Region (DISEMBL)
MGAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKPHFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGKAKDELITIYCPFMGLAVLAFLRGLVGQSSKTTSFNIGKRPALARKKKA
Disordered Region (DISPRO)
*GAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKPHFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGKAKDELITIYCPFMGLAVLAFLRGLVG**********************
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKPHFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGKAKDELITIYCPFMGLAVLAFLRGLVGQSSKTTSFNIGKRPALARKKKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q6DFQ5	171	Transmembrane protein 97	yes	no	0.75	0.736	0.267	3e-09
Q4R8A8	176	Transmembrane protein 97	N/A	no	0.761	0.727	0.256	3e-08
Q3MHW7	176	Transmembrane protein 97	yes	no	0.708	0.676	0.272	4e-08
Q8VD00	176	Transmembrane protein 97	yes	no	0.726	0.693	0.288	4e-08
Q5BJF2	176	Transmembrane protein 97	yes	no	0.696	0.664	0.271	6e-08
Q5U3Y7	176	Transmembrane protein 97	yes	no	0.726	0.693	0.28	8e-08

>sp|Q6DFQ5|TMM97_XENTR Transmembrane protein 97 OS=Xenopus tropicalis GN=tmem97 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 1/127 (0%)

Query: 1   MGAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEK 60
           M    +L++ I F +F +      L+D QA LP + YP  L+DL  WYT  + D+L    
Sbjct: 1   MAVCARLLEWIFFFYFFSHIPITLLVDLQAVLPPSLYPQELLDLMKWYTVAFKDHLMANP 60

Query: 61  PHFFVGIMWLQLLFQWPLALVNIFAILTSK-SWLNTTCLIYGSSVLTSMAAVLAELMGSG 119
           P +F   ++ + + Q P   V  +A       W+    ++Y + V T++ A++  ++   
Sbjct: 61  PPWFKSFVYCEAILQLPFFPVAAYAFFKGGCKWIRIPAIVYSAHVATTVIAIIGHILFGE 120

Query: 120 KAKDELI 126
             K ++I
Sbjct: 121 FPKSDVI 127

May play a role as a regulator of cellular cholesterol homeostasis.
Xenopus tropicalis (taxid: 8364)

>sp|Q4R8A8|TMM97_MACFA Transmembrane protein 97 OS=Macaca fascicularis GN=Tmem97 PE=2 SV=2

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 16/144 (11%)

Query: 6   KLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKPHFFV 65
           + ++ +L ++F++       +D QA LP   YP    +L  WY  E+ D L  E P +F 
Sbjct: 8   RCVEWLLGIYFLSHIPITLFMDLQAVLPRELYPVEFRNLLKWYAKEFKDPLLQEPPAWFK 67

Query: 66  GIMWLQLLFQWPLALVNIFAILT-SKSWLNTTCLIYGSSVLTSMAAVLAELM------GS 118
             ++ +L+FQ P   +  +A L  S  W+ T  +IY    +T++  +L+  +       S
Sbjct: 68  SFLFCELVFQLPFFPIATYAFLKGSCKWIRTPAIIYSVHTMTTLIPILSTFLFEDFSKAS 127

Query: 119 G---------KAKDELITIYCPFM 133
           G           +  LI++Y P++
Sbjct: 128 GFKGQRPETLHERLTLISVYAPYL 151

Plays a role as a regulator of cellular cholesterol homeostasis.

Macaca fascicularis (taxid: 9541)

>sp|Q3MHW7|TMM97_BOVIN Transmembrane protein 97 OS=Bos taurus GN=TMEM97 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 17/136 (12%)

Query: 13  FVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKPHFFVGIMWLQL 72
           F F   I + + L+D Q  LP + YP  L +L+ WY +E+ D L    P +F   ++ +L
Sbjct: 16  FYFLSHIPITL-LMDLQGVLPRDLYPVELRNLQQWYIEEFKDPLLQTPPAWFKSFLFCEL 74

Query: 73  LFQWPLALVNIFAILTSK-SWLNTTCLIYGSSVLTSMAAVLAELM-----------GSG- 119
           +FQ P   +  +A       W+ T  +IY    +T++  +L+ L+           G G 
Sbjct: 75  VFQLPFFPIAAYAFFKGGCKWIRTPAIIYSVHTMTTLIPILSTLLLDDFSKASHFRGQGP 134

Query: 120 ---KAKDELITIYCPF 132
              + +  LI++Y P+
Sbjct: 135 KTFQERLFLISVYIPY 150

Plays a role as a regulator of cellular cholesterol homeostasis.

Bos taurus (taxid: 9913)

>sp|Q8VD00|TMM97_MOUSE Transmembrane protein 97 OS=Mus musculus GN=Tmem97 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 3/125 (2%)

Query: 1   MGAFV--KLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFT 58
           MGA    + ++ +L ++FV+       ID QA LP   YP    +L  WY+ E+ D L  
Sbjct: 1   MGALAARRCVEWLLGLYFVSHIPITLFIDLQAVLPPELYPQEFSNLLRWYSKEFKDPLMQ 60

Query: 59  EKPHFFVGIMWLQLLFQWPLALVNIFAILT-SKSWLNTTCLIYGSSVLTSMAAVLAELMG 117
           E P +F   +  +L+FQ P   +  +A    S  W+    +IY +  +T++  +L  L+ 
Sbjct: 61  EPPVWFKSFLLCELVFQLPFFPIAAYAFFKGSCRWIRIPAIIYAAHTITTLIPILYTLLF 120

Query: 118 SGKAK 122
              +K
Sbjct: 121 EDFSK 125

Plays a role as a regulator of cellular cholesterol homeostasis.

Mus musculus (taxid: 10090)

>sp|Q5BJF2|TMM97_HUMAN Transmembrane protein 97 OS=Homo sapiens GN=TMEM97 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)

Query: 6   KLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKPHFFV 65
           + ++ +L ++F++       +D QA LP   YP    +L  WY  E+ D L  E P +F 
Sbjct: 8   RCVEWLLGLYFLSHIPITLFMDLQAVLPRELYPVEFRNLLKWYAKEFKDPLLQEPPAWFK 67

Query: 66  GIMWLQLLFQWPLALVNIFAILT-SKSWLNTTCLIYGSSVLTSMAAVLAELMGSGKAK 122
             ++ +L+FQ P   +  +A L  S  W+ T  +IY    +T++  +L+  +    +K
Sbjct: 68  SFLFCELVFQLPFFPIATYAFLKGSCKWIRTPAIIYSVHTMTTLIPILSTFLFEDFSK 125

Plays a role as a regulator of cellular cholesterol homeostasis.

Homo sapiens (taxid: 9606)

>sp|Q5U3Y7|TMM97_RAT Transmembrane protein 97 OS=Rattus norvegicus GN=Tmem97 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 3/125 (2%)

Query: 1   MGAFV--KLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFT 58
           MGA    + ++ +L ++FV+       ID QA LP   YP    +L  WY+ E+ D L  
Sbjct: 1   MGAVTARRCVEWLLGLYFVSHIPITMFIDLQALLPPELYPQEFSNLLRWYSKEFKDPLMQ 60

Query: 59  EKPHFFVGIMWLQLLFQWPLALVNIFAILT-SKSWLNTTCLIYGSSVLTSMAAVLAELMG 117
           E P +F   ++ +L+FQ P   +  +A    S  W+    +IY    +T++  +L  ++ 
Sbjct: 61  EPPVWFKSFLFCELVFQLPFFPIAAYAFFKGSCRWIRIPAIIYAVHTITTLIPILYTILF 120

Query: 118 SGKAK 122
              +K
Sbjct: 121 EDFSK 125

Plays a role as a regulator of cellular cholesterol homeostasis.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
255566379	167	conserved hypothetical protein [Ricinus	0.988	0.994	0.656	1e-59
356517626	168	PREDICTED: uncharacterized protein LOC10	0.988	0.988	0.628	3e-56
255638049	168	unknown [Glycine max]	0.988	0.988	0.622	8e-56
351721720	168	uncharacterized protein LOC100527741 pre	0.988	0.988	0.616	1e-55
357471215	167	Transmembrane protein [Medicago truncatu	0.994	1.0	0.630	8e-55
388519639	167	unknown [Medicago truncatula]	0.994	1.0	0.625	6e-54
297826679	168	hypothetical protein ARALYDRAFT_482166 [	0.994	0.994	0.573	1e-53
18402955	168	putative transmembrane protein 97 [Arabi	0.994	0.994	0.573	1e-53
297826677	168	hypothetical protein ARALYDRAFT_344996 [	0.994	0.994	0.573	2e-53
297843316	168	hypothetical protein ARALYDRAFT_470516 [	0.988	0.988	0.556	2e-50

>gi|255566379|ref|XP_002524175.1| conserved hypothetical protein [Ricinus communis] gi|223536544|gb|EEF38190.1| conserved hypothetical protein [Ricinus communis]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/169 (65%), Positives = 135/169 (79%), Gaps = 3/169 (1%)

Query: 1   MGAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEK 60
           MGA  KLIDAILF+FFV IA+A PLIDAQ CLP+N +P  L+DLK WY++EYGDYL +EK
Sbjct: 1   MGAITKLIDAILFLFFVVIAVAAPLIDAQTCLPLNLFPDMLIDLKKWYSNEYGDYLVSEK 60

Query: 61  PHFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGK 120
           PHFFVG++W++LLFQWPLAL N++ IL SK W NTTCLIYG+SV TSM A++AELMGSGK
Sbjct: 61  PHFFVGVVWIELLFQWPLALFNLYGILASKPWFNTTCLIYGASVFTSMGAIMAELMGSGK 120

Query: 121 AKDELITIYCPFMGLAVLAFLRGLVGQSSKTTSFNIGKRPA-LARKKKA 168
           A + L+ +Y PFMGL +LA LRGL+  SS   S  +GKR   L RKK+A
Sbjct: 121 ATERLMMVYAPFMGLGILAILRGLMPNSS--ASIVLGKRATPLPRKKRA 167

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517626|ref|XP_003527488.1| PREDICTED: uncharacterized protein LOC100790628 [Glycine max]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 105/167 (62%), Positives = 136/167 (81%), Gaps = 1/167 (0%)

Query: 2   GAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKP 61
           G  +KL+DA+LF+FF+ IA+  PLIDAQ CLP++++P  LV LK  YT +YGDYL  EKP
Sbjct: 3   GCVLKLVDAVLFLFFLLIAVVAPLIDAQTCLPLSYFPDILVQLKEHYTKDYGDYLVAEKP 62

Query: 62  HFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGKA 121
           HFFVG++WL+LLFQWPLAL++++AILTSK W NTTCLIYG SV TSM A+L+E+M S +A
Sbjct: 63  HFFVGLVWLELLFQWPLALLSLYAILTSKPWFNTTCLIYGVSVTTSMVAILSEMMNSKRA 122

Query: 122 KDELITIYCPFMGLAVLAFLRGLVGQSSKTTSFNIGKRPALARKKKA 168
            ++L+TIY  F+GL VLA LRGL+  SSK++S  +GKR ALARKK+A
Sbjct: 123 SEKLLTIYASFLGLGVLALLRGLLTCSSKSSS-ALGKRSALARKKRA 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638049|gb|ACU19339.1| unknown [Glycine max]

 Score =  221 bits (563), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 104/167 (62%), Positives = 135/167 (80%), Gaps = 1/167 (0%)

Query: 2   GAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKP 61
           G  +KL+D +LF+FF+ IA+  PLIDAQ CLP++++P  LV LK  YT +YGDYL  EKP
Sbjct: 3   GCVLKLVDVVLFLFFLLIAVVAPLIDAQTCLPLSYFPDILVQLKEHYTKDYGDYLVAEKP 62

Query: 62  HFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGKA 121
           HFFVG++WL+LLFQWPLAL++++AILTSK W NTTCLIYG SV TSM A+L+E+M S +A
Sbjct: 63  HFFVGLVWLELLFQWPLALLSLYAILTSKPWFNTTCLIYGVSVTTSMVAILSEMMNSKRA 122

Query: 122 KDELITIYCPFMGLAVLAFLRGLVGQSSKTTSFNIGKRPALARKKKA 168
            ++L+TIY  F+GL VLA LRGL+  SSK++S  +GKR ALARKK+A
Sbjct: 123 SEKLLTIYASFLGLGVLALLRGLLTCSSKSSS-ALGKRSALARKKRA 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721720|ref|NP_001236707.1| uncharacterized protein LOC100527741 precursor [Glycine max] gi|255633090|gb|ACU16900.1| unknown [Glycine max]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/167 (61%), Positives = 137/167 (82%), Gaps = 1/167 (0%)

Query: 2   GAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKP 61
           G  +KL+D++LF+FF+ IA+  PLIDAQ CLP++++P  LV LK  YT++YGDYL  EKP
Sbjct: 3   GCVLKLVDSVLFLFFLLIAVVAPLIDAQTCLPLSYFPDVLVQLKEQYTNDYGDYLVAEKP 62

Query: 62  HFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGKA 121
           HFFVG++WL+LLFQWPLAL++++A+LTSK W NTTCLIYG SV TSM A+L+ +M S +A
Sbjct: 63  HFFVGLVWLELLFQWPLALLSLYAMLTSKPWFNTTCLIYGVSVTTSMVAILSGMMNSKRA 122

Query: 122 KDELITIYCPFMGLAVLAFLRGLVGQSSKTTSFNIGKRPALARKKKA 168
            ++L+TIY PF+GL VLA LRGL+  SSK++S  +GKR ALARKK+A
Sbjct: 123 SEKLLTIYAPFLGLGVLALLRGLLTCSSKSSS-ALGKRSALARKKRA 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357471215|ref|XP_003605892.1| Transmembrane protein [Medicago truncatula] gi|355506947|gb|AES88089.1| Transmembrane protein [Medicago truncatula]

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 106/168 (63%), Positives = 138/168 (82%), Gaps = 1/168 (0%)

Query: 1   MGAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEK 60
           MG F+KL+D  LF+FF+ I +  PLIDAQ CLP++++P  LV++KTWYT+EYGDYL  EK
Sbjct: 1   MGIFLKLVDFTLFLFFLLITIVAPLIDAQTCLPLSYFPEILVNVKTWYTNEYGDYLVAEK 60

Query: 61  PHFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGK 120
           PHFFVG++WL+LLFQWPLA++N++AIL+SK W NTTCLIYG S+ TSM AVL+E+MGS K
Sbjct: 61  PHFFVGLVWLELLFQWPLAVLNVYAILSSKGWFNTTCLIYGVSLSTSMVAVLSEMMGSKK 120

Query: 121 AKDELITIYCPFMGLAVLAFLRGLVGQSSKTTSFNIGKRPALARKKKA 168
           A ++L+T+Y PFM   +LA LRGL+  SSK+ S   GKRPA+ARKK+A
Sbjct: 121 ASEKLLTMYFPFMCFGILATLRGLLATSSKSAS-AFGKRPAMARKKRA 167

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519639|gb|AFK47881.1| unknown [Medicago truncatula]

 Score =  215 bits (547), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 105/168 (62%), Positives = 137/168 (81%), Gaps = 1/168 (0%)

Query: 1   MGAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEK 60
           MG F+KL+D  LF+FF+ I +  PLIDAQ CLP++++P  LV++KTWYT+EY DYL  EK
Sbjct: 1   MGIFLKLVDFTLFLFFLLITIVAPLIDAQTCLPLSYFPEILVNVKTWYTNEYDDYLVAEK 60

Query: 61  PHFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGK 120
           PHFFVG++WL+LLFQWPLA++N++AIL+SK W NTTCLIYG S+ TSM AVL+E+MGS K
Sbjct: 61  PHFFVGLVWLELLFQWPLAVLNVYAILSSKGWFNTTCLIYGVSLSTSMVAVLSEMMGSKK 120

Query: 121 AKDELITIYCPFMGLAVLAFLRGLVGQSSKTTSFNIGKRPALARKKKA 168
           A ++L+T+Y PFM   +LA LRGL+  SSK+ S   GKRPA+ARKK+A
Sbjct: 121 ASEKLLTMYFPFMCFGILATLRGLLATSSKSAS-AFGKRPAMARKKRA 167

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826679|ref|XP_002881222.1| hypothetical protein ARALYDRAFT_482166 [Arabidopsis lyrata subsp. lyrata] gi|297327061|gb|EFH57481.1| hypothetical protein ARALYDRAFT_482166 [Arabidopsis lyrata subsp. lyrata]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/169 (57%), Positives = 133/169 (78%), Gaps = 2/169 (1%)

Query: 1   MGAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEK 60
           MGAF KLIDA+LF++F  +A+  PLID Q  LP + +P F+VDL  WY DE+GDYL  +K
Sbjct: 1   MGAFCKLIDAVLFLYFALMAVIAPLIDGQTSLPGDIFPAFIVDLNRWYIDEFGDYLVKDK 60

Query: 61  PHFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGK 120
           PHF VG++W +LL  WPL++VN++AIL  KSW +TT ++YG+SV+TSMAA+L E++GSGK
Sbjct: 61  PHFLVGLVWHELLLLWPLSIVNVYAILAGKSWFSTTSMVYGASVVTSMAAILGEMIGSGK 120

Query: 121 AKDELITIYCPFMGLAVLAFLRGLVGQSSKTTSFNIGKRPA-LARKKKA 168
           A ++L+ IY PFMG+ +LA LRGL+ QS+K+    +GKRPA LAR+K+A
Sbjct: 121 ASEKLLIIYVPFMGIGILALLRGLLSQSNKSGG-AVGKRPAILARRKRA 168

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402955|ref|NP_565742.1| putative transmembrane protein 97 [Arabidopsis thaliana] gi|3831458|gb|AAC69940.1| expressed protein [Arabidopsis thaliana] gi|21618093|gb|AAM67143.1| unknown [Arabidopsis thaliana] gi|28466853|gb|AAO44035.1| At2g32380 [Arabidopsis thaliana] gi|110736581|dbj|BAF00256.1| hypothetical protein [Arabidopsis thaliana] gi|330253581|gb|AEC08675.1| putative transmembrane protein 97 [Arabidopsis thaliana]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/169 (57%), Positives = 132/169 (78%), Gaps = 2/169 (1%)

Query: 1   MGAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEK 60
           MGAF KLIDA+LF++F  +A+  PLID Q  LP + +P F+VDL  WY DE+GDYL  EK
Sbjct: 1   MGAFCKLIDAVLFLYFALMAVIAPLIDGQTSLPGDIFPAFIVDLNRWYIDEFGDYLVKEK 60

Query: 61  PHFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGK 120
           PHF VG++W +LL  WPL++VN++AIL  KSW  TT ++YG+SV+TSMAA+L E++GSGK
Sbjct: 61  PHFLVGLVWHELLLLWPLSIVNVYAILAGKSWFGTTSMVYGASVVTSMAAILGEMIGSGK 120

Query: 121 AKDELITIYCPFMGLAVLAFLRGLVGQSSKTTSFNIGKRPA-LARKKKA 168
           A ++L+ +Y PFMG+ +LA LRGL+ QS+K+    +GKRPA LAR+K+A
Sbjct: 121 ASEKLLMMYVPFMGVGILALLRGLLSQSNKSGG-AVGKRPAILARRKRA 168

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826677|ref|XP_002881221.1| hypothetical protein ARALYDRAFT_344996 [Arabidopsis lyrata subsp. lyrata] gi|297327060|gb|EFH57480.1| hypothetical protein ARALYDRAFT_344996 [Arabidopsis lyrata subsp. lyrata]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 97/169 (57%), Positives = 134/169 (79%), Gaps = 2/169 (1%)

Query: 1   MGAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEK 60
           MGAF KLIDA+LF++F  +A+  PLID+Q  LP + +P FLVDL  WY DE+GDYL  EK
Sbjct: 1   MGAFCKLIDAVLFLYFALMAIVAPLIDSQISLPGDIFPAFLVDLNRWYIDEFGDYLAKEK 60

Query: 61  PHFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGK 120
           PHF VG++W +LL  WPL++VN++AIL  KSW  TT ++YG+SV+TSMAA+L E++GSGK
Sbjct: 61  PHFLVGLIWHELLLLWPLSIVNVYAILAGKSWFGTTSMVYGASVVTSMAAILGEMVGSGK 120

Query: 121 AKDELITIYCPFMGLAVLAFLRGLVGQSSKTTSFNIGKRPA-LARKKKA 168
           A ++L+ ++ PFMG+ +LA LRGL+ +SSK++  + GKRPA LAR+K+A
Sbjct: 121 ASEKLLMMHLPFMGVGILALLRGLLSRSSKSSGAD-GKRPAILARRKRA 168

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843316|ref|XP_002889539.1| hypothetical protein ARALYDRAFT_470516 [Arabidopsis lyrata subsp. lyrata] gi|297335381|gb|EFH65798.1| hypothetical protein ARALYDRAFT_470516 [Arabidopsis lyrata subsp. lyrata]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/167 (55%), Positives = 123/167 (73%), Gaps = 1/167 (0%)

Query: 1   MGAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEK 60
           MGA  KLID  LFV+F ++A+  PLID Q  LP   YP FL DLK+ Y  ++GDYL  EK
Sbjct: 1   MGALGKLIDGALFVYFASMAIIAPLIDGQTSLPSGIYPAFLTDLKSKYIADFGDYLLMEK 60

Query: 61  PHFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGK 120
           PHF VG++W +LLF WPL++ N++AIL  KSW  TTCL+YG+SV+TSMAA+L E++GSGK
Sbjct: 61  PHFLVGLVWHELLFLWPLSVANVYAILAGKSWFGTTCLLYGASVVTSMAAILGEMIGSGK 120

Query: 121 AKDELITIYCPFMGLAVLAFLRGLVGQSSKTTSFNIGKRPALARKKK 167
           A D L+ +Y PFMG  +LA LRGLV +S+K T  ++GKR  +  ++K
Sbjct: 121 ASDRLLMMYVPFMGFGILAVLRGLVCRSTKNTG-SVGKRSTIMPRRK 166

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2062530	168	AT2G32380 "AT2G32380" [Arabido	0.994	0.994	0.573	5.6e-52
TAIR|locus:2207150	168	AT1G05210 "AT1G05210" [Arabido	0.988	0.988	0.550	2.3e-48
TAIR|locus:2207250	160	AT1G05220 "AT1G05220" [Arabido	0.952	1.0	0.523	3.6e-41
UNIPROTKB|Q6DFQ5	171	tmem97 "Transmembrane protein	0.839	0.824	0.279	9.1e-13
UNIPROTKB|F1N859	173	TMEM97 "Uncharacterized protei	0.690	0.670	0.273	5.8e-11
MGI|MGI:1916321	176	Tmem97 "transmembrane protein	0.690	0.659	0.294	1.2e-10
UNIPROTKB|Q4R8A8	176	Tmem97 "Transmembrane protein	0.660	0.630	0.276	1.5e-10
RGD|1307423	176	Tmem97 "transmembrane protein	0.690	0.659	0.285	2e-10
UNIPROTKB|Q5BJF2	176	TMEM97 "Transmembrane protein	0.660	0.630	0.276	2.5e-10
UNIPROTKB|Q3MHW7	176	TMEM97 "Transmembrane protein	0.613	0.585	0.295	4.1e-10

TAIR|locus:2062530 AT2G32380 "AT2G32380" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 97/169 (57%), Positives = 132/169 (78%)

Query:     1 MGAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEK 60
             MGAF KLIDA+LF++F  +A+  PLID Q  LP + +P F+VDL  WY DE+GDYL  EK
Sbjct:     1 MGAFCKLIDAVLFLYFALMAVIAPLIDGQTSLPGDIFPAFIVDLNRWYIDEFGDYLVKEK 60

Query:    61 PHFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGK 120
             PHF VG++W +LL  WPL++VN++AIL  KSW  TT ++YG+SV+TSMAA+L E++GSGK
Sbjct:    61 PHFLVGLVWHELLLLWPLSIVNVYAILAGKSWFGTTSMVYGASVVTSMAAILGEMIGSGK 120

Query:   121 AKDELITIYCPFMGLAVLAFLRGLVGQSSKTTSFNIGKRPA-LARKKKA 168
             A ++L+ +Y PFMG+ +LA LRGL+ QS+K+    +GKRPA LAR+K+A
Sbjct:   121 ASEKLLMMYVPFMGVGILALLRGLLSQSNKSGGA-VGKRPAILARRKRA 168

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2207150 AT1G05210 "AT1G05210" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 92/167 (55%), Positives = 123/167 (73%)

Query:     1 MGAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEK 60
             MGA  KLID  LFV+FV++A+  PLID Q  LP   YP FL DLK+ Y  ++GDYL  EK
Sbjct:     1 MGALGKLIDVALFVYFVSMAIIAPLIDGQTSLPSGIYPAFLTDLKSKYIADFGDYLLMEK 60

Query:    61 PHFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGK 120
             PHF VG++W +LLF WPL++ N++AIL  KSW  TTCL+YG+S++TSMAA+L +++GSGK
Sbjct:    61 PHFLVGLVWHELLFLWPLSIANVYAILAGKSWFGTTCLLYGASLVTSMAAILGDMIGSGK 120

Query:   121 AKDELITIYCPFMGLAVLAFLRGLVGQSSKTTSFNIGKRPALARKKK 167
             A D L+ +Y PFMG  +LA LRGLV +S+K T  + GKR  +  ++K
Sbjct:   121 ASDRLLMMYVPFMGFGILAVLRGLVYRSTKNTGSS-GKRSTIMPRRK 166

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2207250 AT1G05220 "AT1G05220" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 88/168 (52%), Positives = 118/168 (70%)

Query:     1 MGAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEK 60
             MGA  KLI+  LF FF  +A+ VPL++ Q   P   YP  L DLK WY+ E+ DYLF EK
Sbjct:     1 MGALGKLINISLFFFFALMAINVPLLNGQILFP-GIYPKLLTDLKDWYSSEFNDYLFIEK 59

Query:    61 PHFFVGIMWLQLLFQWPLALVNIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMGSGK 120
             P FFVG++W +++F  PL++VNI+AILTSKSW  TT L+YG+S LTSMAA+L +++GS K
Sbjct:    60 PLFFVGLVWHEIIFLLPLSIVNIYAILTSKSWFGTTSLLYGASFLTSMAAILGDMIGSEK 119

Query:   121 AKDELITIYCPFMGLAVLAFLRGLVGQSSKTTSFNIGKRPALARKKKA 168
               ++L+  Y PF+GLA+LA LRGLV  S+K ++        LAR+K A
Sbjct:   120 VTNKLLLAYLPFVGLAILAMLRGLVTCSTKRST-------VLARRKLA 160

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q6DFQ5 tmem97 "Transmembrane protein 97" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 43/154 (27%), Positives = 75/154 (48%)

Query:     1 MGAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEK 60
             M    +L++ I F +F +      L+D QA LP + YP  L+DL  WYT  + D+L    
Sbjct:     1 MAVCARLLEWIFFFYFFSHIPITLLVDLQAVLPPSLYPQELLDLMKWYTVAFKDHLMANP 60

Query:    61 PHFFVGIMWLQLLFQWPLALVNIFAILTSK-SWLNTTCLIYGSSVLTSMAAVLAELM-GS 118
             P +F   ++ + + Q P   V  +A       W+    ++Y + V T++ A++  ++ G 
Sbjct:    61 PPWFKSFVYCEAILQLPFFPVAAYAFFKGGCKWIRIPAIVYSAHVATTVIAIIGHILFGE 120

Query:   119 -GKA--------KDEL--ITIYCPFMGLAVLAFL 141
               K+        KD L  ++IY P++ + VL  L
Sbjct:   121 FPKSDVIAPLTQKDRLTLVSIYAPYLLVPVLLLL 154

GO:0005764 "lysosome" evidence=ISS

GO:0005791 "rough endoplasmic reticulum" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0031965 "nuclear membrane" evidence=ISS

GO:0042632 "cholesterol homeostasis" evidence=ISS

UNIPROTKB|F1N859 TMEM97 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 32/117 (27%), Positives = 57/117 (48%)

Query:     1 MGAFVKLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEK 60
             M   ++ ++A   ++FV+      L+D QA LP   +P  L +L  WY   + D +    
Sbjct:     3 MARALRCLEAAFALYFVSHIPITLLLDLQALLPAGLHPQQLTELLRWYATTFRDPMMLHP 62

Query:    61 PHFFVGIMWLQLLFQWPLALVNIFAILTSK-SWLNTTCLIYGSSVLTSMAAVLAELM 116
             P +F   ++ +   Q P   V  +A L     W+ T  +IY + V T++ A+LA ++
Sbjct:    63 PEWFKAFIYCEAALQLPFFPVAAYAFLKGGCKWIRTPAIIYSTHVATTLFAILAHIL 119

GO:0005764 "lysosome" evidence=IEA

GO:0005791 "rough endoplasmic reticulum" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

MGI|MGI:1916321 Tmem97 "transmembrane protein 97" [Mus musculus (taxid:10090)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 35/119 (29%), Positives = 59/119 (49%)

Query:     1 MGAFV--KLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFT 58
             MGA    + ++ +L ++FV+       ID QA LP   YP    +L  WY+ E+ D L  
Sbjct:     1 MGALAARRCVEWLLGLYFVSHIPITLFIDLQAVLPPELYPQEFSNLLRWYSKEFKDPLMQ 60

Query:    59 EKPHFFVGIMWLQLLFQWPLALVNIFAILT-SKSWLNTTCLIYGSSVLTSMAAVLAELM 116
             E P +F   +  +L+FQ P   +  +A    S  W+    +IY +  +T++  +L  L+
Sbjct:    61 EPPVWFKSFLLCELVFQLPFFPIAAYAFFKGSCRWIRIPAIIYAAHTITTLIPILYTLL 119

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005764 "lysosome" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005791 "rough endoplasmic reticulum" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=ISO

GO:0042632 "cholesterol homeostasis" evidence=ISO

UNIPROTKB|Q4R8A8 Tmem97 "Transmembrane protein 97" [Macaca fascicularis (taxid:9541)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 31/112 (27%), Positives = 57/112 (50%)

Query:     6 KLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKPHFFV 65
             + ++ +L ++F++       +D QA LP   YP    +L  WY  E+ D L  E P +F 
Sbjct:     8 RCVEWLLGIYFLSHIPITLFMDLQAVLPRELYPVEFRNLLKWYAKEFKDPLLQEPPAWFK 67

Query:    66 GIMWLQLLFQWPLALVNIFAILT-SKSWLNTTCLIYGSSVLTSMAAVLAELM 116
               ++ +L+FQ P   +  +A L  S  W+ T  +IY    +T++  +L+  +
Sbjct:    68 SFLFCELVFQLPFFPIATYAFLKGSCKWIRTPAIIYSVHTMTTLIPILSTFL 119

GO:0005764 "lysosome" evidence=ISS

GO:0005791 "rough endoplasmic reticulum" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0031965 "nuclear membrane" evidence=ISS

GO:0042632 "cholesterol homeostasis" evidence=ISS

RGD|1307423 Tmem97 "transmembrane protein 97" [Rattus norvegicus (taxid:10116)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 34/119 (28%), Positives = 59/119 (49%)

Query:     1 MGAFV--KLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFT 58
             MGA    + ++ +L ++FV+       ID QA LP   YP    +L  WY+ E+ D L  
Sbjct:     1 MGAVTARRCVEWLLGLYFVSHIPITMFIDLQALLPPELYPQEFSNLLRWYSKEFKDPLMQ 60

Query:    59 EKPHFFVGIMWLQLLFQWPLALVNIFAILT-SKSWLNTTCLIYGSSVLTSMAAVLAELM 116
             E P +F   ++ +L+FQ P   +  +A    S  W+    +IY    +T++  +L  ++
Sbjct:    61 EPPVWFKSFLFCELVFQLPFFPIAAYAFFKGSCRWIRIPAIIYAVHTITTLIPILYTIL 119

GO:0005737 "cytoplasm" evidence=ISO

GO:0005764 "lysosome" evidence=ISO;ISS

GO:0005791 "rough endoplasmic reticulum" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=ISO;ISS

GO:0042632 "cholesterol homeostasis" evidence=ISO;ISS

UNIPROTKB|Q5BJF2 TMEM97 "Transmembrane protein 97" [Homo sapiens (taxid:9606)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 31/112 (27%), Positives = 57/112 (50%)

Query:     6 KLIDAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKPHFFV 65
             + ++ +L ++F++       +D QA LP   YP    +L  WY  E+ D L  E P +F 
Sbjct:     8 RCVEWLLGLYFLSHIPITLFMDLQAVLPRELYPVEFRNLLKWYAKEFKDPLLQEPPAWFK 67

Query:    66 GIMWLQLLFQWPLALVNIFAILT-SKSWLNTTCLIYGSSVLTSMAAVLAELM 116
               ++ +L+FQ P   +  +A L  S  W+ T  +IY    +T++  +L+  +
Sbjct:    68 SFLFCELVFQLPFFPIATYAFLKGSCKWIRTPAIIYSVHTMTTLIPILSTFL 119

GO:0016021 "integral to membrane" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0005791 "rough endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005764 "lysosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0001558 "regulation of cell growth" evidence=NAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q3MHW7 TMEM97 "Transmembrane protein 97" [Bos taurus (taxid:9913)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 31/105 (29%), Positives = 54/105 (51%)

Query:    13 FVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKPHFFVGIMWLQL 72
             F F   I + + L+D Q  LP + YP  L +L+ WY +E+ D L    P +F   ++ +L
Sbjct:    16 FYFLSHIPITL-LMDLQGVLPRDLYPVELRNLQQWYIEEFKDPLLQTPPAWFKSFLFCEL 74

Query:    73 LFQWPLALVNIFAILTSK-SWLNTTCLIYGSSVLTSMAAVLAELM 116
             +FQ P   +  +A       W+ T  +IY    +T++  +L+ L+
Sbjct:    75 VFQLPFFPIAAYAFFKGGCKWIRTPAIIYSVHTMTTLIPILSTLL 119


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.142   0.442    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      168       168   0.00079  108 3  11 22  0.43    31
                                                     31  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  153 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.76u 0.23s 14.99t   Elapsed:  00:00:01
  Total cpu time:  14.76u 0.23s 14.99t   Elapsed:  00:00:01
  Start:  Fri May 10 04:58:27 2013   End:  Fri May 10 04:58:28 2013

GO:0031965 "nuclear membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005791 "rough endoplasmic reticulum" evidence=ISS

GO:0005764 "lysosome" evidence=ISS

GO:0042632 "cholesterol homeostasis" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT2G32380	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Transmembrane protein 97, predicted (InterPro-IPR016964); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G05210.1); Has 102 Blast hits to 102 proteins in 33 species- Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 9; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink). (168 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	anac089	anac089 (Arabidopsis NAC domain containing protein 89); transcription factor; Arabidopsis NAC d [...] (340 aa)					•				0.923
	NTL9	NTL9 (NAC transcription factor-like 9); transcription factor; NAC transcription factor-like 9 ( [...] (534 aa)					•				0.923
	NLM1	NLM1; arsenite transmembrane transporter/ water channel; an aquaporin whose expression level is [...] (296 aa)					•				0.923
	VAP	VAP (VESICLE ASSOCIATED PROTEIN); protein binding; Encodes VAP27 (for Vesicle-Associated Protei [...] (256 aa)					•				0.923
	AT1G27300	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (200 aa)					•				0.923
	AT1G05210	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (168 aa)				•				•	0.694
	AT4G14420	lesion inducing protein-related; lesion inducing protein-related; LOCATED IN- endoplasmic retic [...] (158 aa)				•					0.529
	AT1G29250	nucleic acid binding; nucleic acid binding; FUNCTIONS IN- nucleic acid binding; INVOLVED IN- bi [...] (130 aa)				•					0.522
	AT1G63220	C2 domain-containing protein; C2 domain-containing protein; FUNCTIONS IN- molecular_function un [...] (147 aa)				•					0.517
	PMM	PMM (PHOSPHOMANNOMUTASE); phosphomannomutase; encodes a phosphomannomutase, involved in ascorba [...] (246 aa)				•					0.512

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
pfam10914	147	pfam10914, DUF2781, Protein of unknown function (D	3e-29

>gnl|CDD|220904 pfam10914, DUF2781, Protein of unknown function (DUF2781)

 Score =  104 bits (261), Expect = 3e-29
 Identities = 51/144 (35%), Positives = 74/144 (51%), Gaps = 9/144 (6%)

Query: 9   DAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKPHFFVGIM 68
           D +  ++F+       LIDAQ  LP   YP  L DL  WY  EY DYL  E P +F   +
Sbjct: 1   DLLYLLYFLLHIPITLLIDAQVVLPPGLYPSPLTDLLRWYISEYEDYLL-EPPAWFKLFV 59

Query: 69  WLQLLFQWPLALVNIFAILT-SKSWLNTTCLIYGSSVLTSMAAVLAELMGSG-------K 120
           WL+L FQ PL +  ++ +L     W+    L+YG +V T+  A L E++          +
Sbjct: 60  WLELFFQLPLFVYALYGLLKPGCPWMPDWLLVYGVNVATTTLACLGEVLHWPFDYRVPER 119

Query: 121 AKDELITIYCPFMGLAVLAFLRGL 144
           AK  L+ +Y P++ L +L  LR L
Sbjct: 120 AKLTLLLLYVPYLLLPLLLALRML 143

This is a eukaryotic family of uncharacterized proteins. Some of the proteins in this family are annotated as membrane proteins. Length = 147

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
PF10914	150	DUF2781: Protein of unknown function (DUF2781); In	100.0
PF05241	194	EBP: Emopamil binding protein ; InterPro: IPR00790	94.78

>PF10914 DUF2781: Protein of unknown function (DUF2781); InterPro: IPR016964 This group represents a predicted transmembrane protein 97

Probab=100.00  E-value=7.4e-48  Score=300.59  Aligned_cols=140  Identities=31%  Similarity=0.631  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhccccCCCCCChhHHHHHHHHHHHhcCCccccCCchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030942            9 DAILFVFFVAIALAVPLIDAQACLPVNFYPPFLVDLKTWYTDEYGDYLFTEKPHFFVGIMWLQLLFQWPLALVNIFAILT   88 (168)
Q Consensus         9 D~~y~~~F~ihipitlliD~q~~~P~~~~p~~l~~l~~~yi~~~~Dpl~~~~P~Wf~~fv~~El~fqlP~f~~~~y~l~~   88 (168)
                      |++|++||++|||+|+++|+|+++|++++|++++++++||+++||||++.|+|.||++|+++|+++|+|++++++|++.+
T Consensus         1 D~~~~~~f~~hi~itl~iD~~~~~P~~~~p~~~~~l~~~yi~~~~D~l~~~~p~wf~~f~~~El~~qlP~~~~~~~~l~~   80 (150)
T PF10914_consen    1 DLFYLIYFLIHIPITLLIDSQPVLPPSLFPSPLQDLRDWYIATYNDPLMADPPPWFKSFVWIELFFQLPFFFYAIYALLK   80 (150)
T ss_pred             CeeHHHHHHHHHHHHHHHhCcccCchhhccHHHHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C-CCcchhHHHHHHHHHHHHHHHHHHHHhc---------CchhhhhHhhhhchHHHHHHHHHHhhhccCC
Q 030942           89 S-KSWLNTTCLIYGSSVLTSMAAVLAELMG---------SGKAKDELITIYCPFMGLAVLAFLRGLVGQS  148 (168)
Q Consensus        89 ~-~~~~~~~~liYg~~~~~Tt~~cl~ei~~---------s~~~~~~L~~~Y~Py~~iP~~m~vdm~~r~~  148 (168)
                      + ++|++.++++||+|+++||++|++|+++         ++++++++.++|+||++||++|++||+.|+.
T Consensus        81 ~~~~~~~~~~lvYg~~~~~Tt~~cl~~~~~~~~~~~~~~~~~~~~~l~~~Y~Py~liP~~~~~~m~~r~~  150 (150)
T PF10914_consen   81 GGSPWIRLLLLVYGVHVATTTLPCLGEVLHGGTWPDLSSPQKARWLLLAIYLPYLLIPLLMALDMFRRLY  150 (150)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            9 9999999999999999999999999998         2345556999999999999999999999863

>PF05241 EBP: Emopamil binding protein ; InterPro: IPR007905 Emopamil binding protein (EBP) is a nonglycosylated type I integral membrane protein of endoplasmic reticulum and shows high level expression in epithelial tissues

Probab=94.78  E-value=0.035  Score=45.21  Aligned_cols=135  Identities=15%  Similarity=0.193  Sum_probs=92.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhccccCCCCC----ChhHHHHHHHHHHHhcCCccccCCchhHHHHHHHHHHHHHHHHHH
Q 030942            6 KLIDAILFVFFVAIALAVPLIDAQACLPVNF----YPPFLVDLKTWYTDEYGDYLFTEKPHFFVGIMWLQLLFQWPLALV   81 (168)
Q Consensus         6 r~~D~~y~~~F~ihipitlliD~q~~~P~~~----~p~~l~~l~~~yi~~~~Dpl~~~~P~Wf~~fv~~El~fqlP~f~~   81 (168)
                      +..|.+-..+|+.--+|-+.+|..-++=+..    -.+.+.++-+-|  .-.|-=..++.+++.+.-.+|.++-.|+.++
T Consensus        28 ~~~~r~~~~W~~~~~~iH~~~eG~f~~~~~~~~~~~~~~~~~lWkeY--a~~D~RY~~~D~~vv~~e~~t~l~~Gpl~l~  105 (194)
T PF05241_consen   28 SKGDRFVFLWFALDGLIHFFLEGYFVYFRPFSPGTSQSLLAQLWKEY--AKADSRYLTSDPFVVCMESITVLLEGPLCLL  105 (194)
T ss_pred             chhhHHHHHHHHHHhhHHheEeeehheechhccccccchHHHHHHHH--ccCCcccccCCCcEEeehhHHHHHHhHHHHH
Confidence            3578888888888888889999876653322    123455564555  4556666666688888888999999999999


Q ss_pred             HHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHhc----------Cc---------hhhh----hHhhhhchHHHHHHH
Q 030942           82 NIFAILTSKSWLNTTCLIYGSSVLTSMAAVLAELMG----------SG---------KAKD----ELITIYCPFMGLAVL  138 (168)
Q Consensus        82 ~~y~l~~~~~~~~~~~liYg~~~~~Tt~~cl~ei~~----------s~---------~~~~----~L~~~Y~Py~~iP~~  138 (168)
                      .+++..++++.-....+          ++|.+|+++          ++         .+-.    .+...+++++++|++
T Consensus       106 ~~~~i~~~~~~r~~l~i----------~vs~~qlygtvlyf~~e~~~g~~~~~~~~~~~~ly~W~y~v~~N~iWivvP~~  175 (194)
T PF05241_consen  106 AAYLIAKRSPYRHFLQI----------VVSVMQLYGTVLYFATEWLEGFVHSPNFSTPEPLYFWFYFVFPNGIWIVVPLL  175 (194)
T ss_pred             HHHHHHhCchHHHHHHH----------HHHHHhhheeeEEEEEHhhccCcCCccCCCCChhhheeehhhcchHHHHHHHH
Confidence            99999998654332222          233344433          11         1111    246789999999999


Q ss_pred             HHHhhhccCCCCCc
Q 030942          139 AFLRGLVGQSSKTT  152 (168)
Q Consensus       139 m~vdm~~r~~~~~~  152 (168)
                      +..+...++....+
T Consensus       176 ~l~~s~~~i~~a~~  189 (194)
T PF05241_consen  176 LLYQSWKEIARAFR  189 (194)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999887775554

The EBP protein has emopamil binding domains, including the sterol acceptor site and the catalytic centre, which show Delta8-Delta7 sterol isomerase activity. Human sterol isomerase, a homologue of mouse EBP, is suggested not only to play a role in cholesterol biosynthesis, but also to affect lipoprotein internalisation. In humans, mutations of EBP are known to cause the genetic disorder of X-linked dominant chondrodysplasia punctata (CDPX2). This syndrome of humans is lethal in most males, and affected females display asymmetric hyperkeratotic skin and skeletal abnormalities [].; GO: 0047750 cholestenol delta-isomerase activity, 0016125 sterol metabolic process, 0005783 endoplasmic reticulum, 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00