Citrus Sinensis ID: 030943

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKMQRWR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccHHccccEEEEEccEEccEEEEEEEEEccccccEEEEEEEEEcccccccccccccccEEEEEEcccccccccccccEEEEEEEEcccEEEEEEEEccccccccccccccEEEEEEcccccEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHccEEEEccccccEEEEEEEEcccccccEEEEEEEEEEcccccccccEccccEEEEEccccccccccccccEEEEEEEccccEEEEEEEEccccccccccccccEEEEEEcccccEEEEEEEccc
Coil and Loop (DISEMBL)
MSRFRGLWQASLNATKRALTWNleelmppseryifNFNSKEElkkwhlysdseygglssasleitesgngmngifsgnlsldlsegskwnisrsgfcgmrskkfdgfidldsYDTIAMKLkgdgrcyistiytenwvnspgqqednswqsfvfvpkdnwYIAKMQRWR
Flexible Loop (DISEMBL)
msrfrglwqaslNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKMQRWR
Low Complexity Region (SEG)
MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKMQRWR
Disordered region (IsUnstruct)
*****GLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGL************GMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKM****
Disordered Region (DISOPRED)
**RFR**WQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKMQRW*
Disordered Region (DISEMBL)
MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKMQRWR
Disordered Region (DISPRO)
*S*FRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKMQRWR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKMQRWR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q9LQI7	227	Probable complex I interm	yes	no	1.0	0.740	0.776	2e-75
Q9VAI1	296	Probable complex I interm	yes	no	0.630	0.358	0.288	2e-09
O42636	278	Complex I intermediate-as	N/A	no	0.869	0.525	0.269	4e-08
Q0MQ83	327	Complex I intermediate-as	N/A	no	0.755	0.388	0.262	3e-06
Q0MQ84	327	Complex I intermediate-as	yes	no	0.755	0.388	0.262	1e-05
Q9CWX2	328	Complex I intermediate-as	yes	no	0.619	0.317	0.318	2e-05
Q9Y375	327	Complex I intermediate-as	yes	no	0.625	0.321	0.278	2e-05
Q0MQ82	327	Complex I intermediate-as	N/A	no	0.625	0.321	0.278	3e-05

>sp|Q9LQI7|CIA30_ARATH Probable complex I intermediate-associated protein 30 OS=Arabidopsis thaliana GN=At1g17350 PE=1 SV=2

 Score =  281 bits (719), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/170 (77%), Positives = 153/170 (90%), Gaps = 2/170 (1%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR L QAS+NATK+ALTWN+EE +PP+E++IF F+SKE+LKKWHLYSDSEYGGLSSA
Sbjct: 1   MSRFRSLLQASVNATKKALTWNVEEWVPPAEKHIFKFHSKEDLKKWHLYSDSEYGGLSSA 60

Query: 61  SLEITESGNGMN--GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
           SLEI + G+G +  G+FSGNLS+DLSEGSKWNISRSGFCGMRSKKFDGFIDLD YD IA+
Sbjct: 61  SLEIPDKGDGSDCTGVFSGNLSVDLSEGSKWNISRSGFCGMRSKKFDGFIDLDGYDAIAL 120

Query: 119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKMQRWR 168
           +++GDGRCYISTIYTENWVNSPGQ EDNSWQ+FVF PKD+WY AK+   R
Sbjct: 121 RIRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDSWYTAKIPLAR 170

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).
Arabidopsis thaliana (taxid: 3702)

>sp|Q9VAI1|CIA30_DROME Probable complex I intermediate-associated protein 30, mitochondrial OS=Drosophila melanogaster GN=CG7598 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 68/118 (57%), Gaps = 12/118 (10%)

Query: 28  PPSERYIFNFNSKEELKKWHLYSDSEYG-GLSSASLEITESGNGMNGIFSGNLSLDLSEG 86
           P     +F+F + + L KW + +D+++G G S+A+LE++ +G G+   F G ++ D ++ 
Sbjct: 85  PGETDVVFDFKAPDVLDKWTVTTDADHGEGKSTATLELSAAGAGL---FHGQVNSDHTKD 141

Query: 87  SKWNISRSGFCGMRSKKF------DGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVN 138
               I R+G+  +R+K+       +   D   Y+ + MK++GDGR Y+  ++TE + +
Sbjct: 142 G--IIKRTGYANIRTKRVRKSFKRETTYDWTQYNMLVMKVRGDGRSYLINLHTEGYFD 197

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Drosophila melanogaster (taxid: 7227)

>sp|O42636|CIA30_NEUCR Complex I intermediate-associated protein 30, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cia30 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 77/193 (39%), Gaps = 47/193 (24%)

Query: 4   FRGLWQASLNATKR-----ALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLS 58
           F+  W  SL+   R       + N+     P E  I NF + E +    L SD++ GG S
Sbjct: 9   FKSFWSRSLDELSRLTNIVVKSENIRGATGPRE--IHNFQTPESVADCKLLSDADVGGSS 66

Query: 59  SASLEITESGNGMNGI--------------------FSGNLSLDLSEGSKWNISRSGFCG 98
           +A L+     N +  +                    F G +SL+L    +  ISR+G+ G
Sbjct: 67  TAHLDWVPPPNAIPTVTAGDGSDRKPYTPIPGSYARFHGTISLELPTDRR-EISRTGYAG 125

Query: 99  MRSKKFDGFI------DLDSYDTIAMKLKGDGRCYISTIYTEN-----------WVNSPG 141
            R+      I      D+D Y  +AM++K D R Y   + TE+           +V  PG
Sbjct: 126 FRTLDRPPTIFGRGLWDIDPYAYLAMRVKTDARSYFVNVRTESVVPLDLHQHRLFVKKPG 185

Query: 142 QQEDN--SWQSFV 152
           Q E     W  FV
Sbjct: 186 QWETVLIKWNDFV 198

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q0MQ83|CIA30_GORGO Complex I intermediate-associated protein 30, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFAF1 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 10/137 (7%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           M  FR L    ++  +     +L E++    + ++ F  KE+L KW + SD   GG S  
Sbjct: 91  MYHFRHLKDEIVDHWRGPEGHSLHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEV 150

Query: 61  SLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFI------DLDSYD 114
            L++ +  N  + +  G LS +  +  +   +RSG+C M+S+   G        D   ++
Sbjct: 151 FLKMGK--NNQSALLYGTLSSEAPQDGE--STRSGYCAMKSRIPRGAFERKMSYDWSQFN 206

Query: 115 TIAMKLKGDGRCYISTI 131
           T+ ++++GDGR ++  I
Sbjct: 207 TLYLRVRGDGRPWMVNI 223

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q0MQ84|CIA30_PANTR Complex I intermediate-associated protein 30, mitochondrial OS=Pan troglodytes GN=NDUFAF1 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 10/137 (7%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           M  FR L    ++  +      L E++    + ++ F  KE+L KW + SD   GG S  
Sbjct: 91  MYHFRHLKDEIVDHWRGPEGHPLHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEV 150

Query: 61  SLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFI------DLDSYD 114
            L++ +  N  + +  G LS +  +  +   +RSG+C M S+   G        D   ++
Sbjct: 151 FLKMGK--NNQSALLYGTLSSEAPQDGE--STRSGYCAMISRIPRGAFERKMSYDWSQFN 206

Query: 115 TIAMKLKGDGRCYISTI 131
           T+ ++++GDGR ++  I
Sbjct: 207 TLYLRVRGDGRPWMVNI 223

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Pan troglodytes (taxid: 9598)

>sp|Q9CWX2|CIA30_MOUSE Complex I intermediate-associated protein 30, mitochondrial OS=Mus musculus GN=Ndufaf1 PE=2 SV=2

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 12/116 (10%)

Query: 23  LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
           L+E++    R ++ F  KE+L KW + SD   GG S   L++  S N  + +  G LS  
Sbjct: 114 LQEVIMEQARVVWQFREKEDLDKWIVTSDKTIGGRSEIFLKM--SKNNRSALLYGTLS-- 169

Query: 83  LSEGSKWNISR-SGFCGMRSKKFDGFI------DLDSYDTIAMKLKGDGRCYISTI 131
            SE  +   SR SG+C M S+   G        D   ++T+ ++++GDGR ++  I
Sbjct: 170 -SEPPQDGDSRQSGYCAMISRIPRGAFERKLSYDWSQFNTLYLRVRGDGRPWMVNI 224

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Mus musculus (taxid: 10090)

>sp|Q9Y375|CIA30_HUMAN Complex I intermediate-associated protein 30, mitochondrial OS=Homo sapiens GN=NDUFAF1 PE=1 SV=2

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 10/115 (8%)

Query: 23  LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
           L E++    + ++ F  KE+L KW + SD   GG S   L++ +  N  + +  G LS +
Sbjct: 113 LHEVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGK--NNQSALLYGTLSSE 170

Query: 83  LSEGSKWNISRSGFCGMRSKKFDGFI------DLDSYDTIAMKLKGDGRCYISTI 131
             +  +   +RSG+C M S+   G        D   ++T+ ++++GDGR ++  I
Sbjct: 171 APQDGE--STRSGYCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNI 223

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Homo sapiens (taxid: 9606)

>sp|Q0MQ82|CIA30_PONPY Complex I intermediate-associated protein 30, mitochondrial OS=Pongo pygmaeus GN=NDUFAF1 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 10/115 (8%)

Query: 23  LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
           L E++    + ++ F  KE+L KW + SD   GG S   L++ +  N  + +  G LS +
Sbjct: 113 LREVLLEQAKVVWQFRGKEDLDKWTVTSDKTIGGRSEVFLKMGK--NNQSALLYGTLSSE 170

Query: 83  LSEGSKWNISRSGFCGMRSK----KFDGFIDLD--SYDTIAMKLKGDGRCYISTI 131
                +   +RSG+C M S+     F+  +  D   ++T+ ++++GDGR ++  I
Sbjct: 171 APHDGES--TRSGYCAMISRIPRGAFERKVSYDWSQFNTLYLRVRGDGRPWMVNI 223

Chaperone protein involved in the assembly of the mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Pongo pygmaeus (taxid: 9600)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
147782669	237	hypothetical protein VITISV_015801 [Viti	0.970	0.687	0.865	3e-80
297742953	225	unnamed protein product [Vitis vinifera]	0.976	0.728	0.859	4e-80
224107911	225	predicted protein [Populus trichocarpa]	1.0	0.746	0.833	2e-79
359483013	241	PREDICTED: probable complex I intermedia	0.970	0.676	0.854	1e-78
225442028	227	PREDICTED: probable complex I intermedia	0.976	0.722	0.849	2e-78
297844682	227	hypothetical protein ARALYDRAFT_471939 [	1.0	0.740	0.8	7e-75
222619192	291	hypothetical protein OsJ_03324 [Oryza sa	0.976	0.563	0.779	3e-74
238478513	236	putative complex I intermediate-associat	0.970	0.690	0.793	7e-74
42562121	227	putative complex I intermediate-associat	1.0	0.740	0.776	7e-74
115439685	229	Os01g0727400 [Oryza sativa Japonica Grou	0.976	0.716	0.779	1e-73

>gi|147782669|emb|CAN61795.1| hypothetical protein VITISV_015801 [Vitis vinifera]

 Score =  302 bits (773), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 141/163 (86%), Positives = 154/163 (94%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR LWQASLNAT++ALTWN+E  +PPSERYIFNFNSKEELKKWHLYSDSEYGG+SSA
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 61  SLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKL 120
           SLEI ++GNG++GIFSGNLSLDL EGSKWNI R GFCGMRSKKFDGFIDL+SYDTIA+K+
Sbjct: 61  SLEIMDAGNGLSGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIALKV 120

Query: 121 KGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAK 163
           KGDGRCYISTIYTENWVNSP QQEDNSWQ+FVFVPKDNWYI K
Sbjct: 121 KGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITK 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742953|emb|CBI35820.3| unnamed protein product [Vitis vinifera]

 Score =  302 bits (773), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 141/164 (85%), Positives = 155/164 (94%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR LWQASLNAT++ALTWN+E  +PPSERYIFNFNSKEELKKWHLYSDSEYGG+SSA
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 61  SLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKL 120
           SLEI ++GNG++GIFSGNLSLDL EGSKWNI R GFCGMRSKKFDGFIDL+SYDTIA+K+
Sbjct: 61  SLEIMDAGNGLSGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIALKV 120

Query: 121 KGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKM 164
           KGDGRCYISTIYTENWVNSP QQEDNSWQ+FVFVPKDNWYI K+
Sbjct: 121 KGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITKI 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107911|ref|XP_002314650.1| predicted protein [Populus trichocarpa] gi|222863690|gb|EEF00821.1| predicted protein [Populus trichocarpa]

 Score =  299 bits (766), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 140/168 (83%), Positives = 156/168 (92%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR LWQASL+ATK+ALTWN+E+LMPP+ER IFNFNS+EELKKWHLYSDSEYGG SSA
Sbjct: 1   MSRFRSLWQASLDATKKALTWNVEDLMPPTERLIFNFNSREELKKWHLYSDSEYGGSSSA 60

Query: 61  SLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAMKL 120
           SLE  + GNG+ G+FSGNLSLD++EGSKWNISRSGFCGMRSKKFDGFIDLD+YDTIA+KL
Sbjct: 61  SLEFMDEGNGLKGVFSGNLSLDVAEGSKWNISRSGFCGMRSKKFDGFIDLDAYDTIALKL 120

Query: 121 KGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKMQRWR 168
           KGDGR YISTIYTENWVNSPGQ EDNSWQ+FVFVPKDNWYIA++   R
Sbjct: 121 KGDGRSYISTIYTENWVNSPGQMEDNSWQAFVFVPKDNWYIARIPLAR 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483013|ref|XP_003632879.1| PREDICTED: probable complex I intermediate-associated protein 30-like isoform 2 [Vitis vinifera]

 Score =  297 bits (760), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 141/165 (85%), Positives = 154/165 (93%), Gaps = 2/165 (1%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR LWQASLNAT++ALTWN+E  +PPSERYIFNFNSKEELKKWHLYSDSEYGG+SSA
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 61  SLEITESGNGMNG--IFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
           SLEI ++GNG++G  IFSGNLSLDL EGSKWNI R GFCGMRSKKFDGFIDL+SYDTIA+
Sbjct: 61  SLEIMDAGNGLSGTGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIAL 120

Query: 119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAK 163
           K+KGDGRCYISTIYTENWVNSP QQEDNSWQ+FVFVPKDNWYI K
Sbjct: 121 KVKGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITK 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442028|ref|XP_002268906.1| PREDICTED: probable complex I intermediate-associated protein 30-like isoform 1 [Vitis vinifera]

 Score =  296 bits (759), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 141/166 (84%), Positives = 155/166 (93%), Gaps = 2/166 (1%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR LWQASLNAT++ALTWN+E  +PPSERYIFNFNSKEELKKWHLYSDSEYGG+SSA
Sbjct: 1   MSRFRSLWQASLNATRKALTWNVENWIPPSERYIFNFNSKEELKKWHLYSDSEYGGMSSA 60

Query: 61  SLEITESGNGMNG--IFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
           SLEI ++GNG++G  IFSGNLSLDL EGSKWNI R GFCGMRSKKFDGFIDL+SYDTIA+
Sbjct: 61  SLEIMDAGNGLSGTGIFSGNLSLDLIEGSKWNIRRGGFCGMRSKKFDGFIDLESYDTIAL 120

Query: 119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKM 164
           K+KGDGRCYISTIYTENWVNSP QQEDNSWQ+FVFVPKDNWYI K+
Sbjct: 121 KVKGDGRCYISTIYTENWVNSPAQQEDNSWQAFVFVPKDNWYITKI 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844682|ref|XP_002890222.1| hypothetical protein ARALYDRAFT_471939 [Arabidopsis lyrata subsp. lyrata] gi|297336064|gb|EFH66481.1| hypothetical protein ARALYDRAFT_471939 [Arabidopsis lyrata subsp. lyrata]

 Score =  285 bits (728), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 136/170 (80%), Positives = 153/170 (90%), Gaps = 2/170 (1%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR L QAS+NATK+ALTWN+EE +PP+E++IF FNSKE+LKKWHLYSDSEYGGLSSA
Sbjct: 1   MSRFRSLLQASVNATKKALTWNVEEWVPPAEKHIFKFNSKEDLKKWHLYSDSEYGGLSSA 60

Query: 61  SLEITESGNGMN--GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
           SLEI + G+G +  GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLD YD IA+
Sbjct: 61  SLEIPDKGDGSDCTGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDGYDAIAL 120

Query: 119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKMQRWR 168
           +L+GDGRCYISTIYTENWVNSPGQ EDNSWQ+FVF PKD+WY AK+   R
Sbjct: 121 RLRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDSWYTAKIPLAR 170

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222619192|gb|EEE55324.1| hypothetical protein OsJ_03324 [Oryza sativa Japonica Group]

 Score =  282 bits (722), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 131/168 (77%), Positives = 151/168 (89%), Gaps = 4/168 (2%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSR R LWQAS+NAT+RA+ WN E+L+PPSE+YIFNFNSK+ELK+WHLYSDSEYGGLSSA
Sbjct: 63  MSRLRALWQASVNATRRAIVWNSEDLIPPSEKYIFNFNSKDELKRWHLYSDSEYGGLSSA 122

Query: 61  SLEITESGNGMN----GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTI 116
           SLEIT+ G G +    G+FSGNLSLD+SEGS W I RSGFCGMRSKKF+GFIDLD+YDTI
Sbjct: 123 SLEITDGGAGGDTSSTGLFSGNLSLDMSEGSTWKIRRSGFCGMRSKKFNGFIDLDAYDTI 182

Query: 117 AMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKM 164
           AMKL+GDGRCYISTIYTENWVNSPGQQEDNSWQ+FV++P+D W I K+
Sbjct: 183 AMKLRGDGRCYISTIYTENWVNSPGQQEDNSWQAFVYLPQDRWQIMKI 230

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478513|ref|NP_001154347.1| putative complex I intermediate-associated protein 30 [Arabidopsis thaliana] gi|332191456|gb|AEE29577.1| putative complex I intermediate-associated protein 30 [Arabidopsis thaliana]

 Score =  281 bits (719), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 131/165 (79%), Positives = 150/165 (90%), Gaps = 2/165 (1%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR L QAS+NATK+ALTWN+EE +PP+E++IF F+SKE+LKKWHLYSDSEYGGLSSA
Sbjct: 1   MSRFRSLLQASVNATKKALTWNVEEWVPPAEKHIFKFHSKEDLKKWHLYSDSEYGGLSSA 60

Query: 61  SLEITESGNG--MNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
           SLEI + G+G    G+FSGNLS+DLSEGSKWNISRSGFCGMRSKKFDGFIDLD YD IA+
Sbjct: 61  SLEIPDKGDGSDCTGVFSGNLSVDLSEGSKWNISRSGFCGMRSKKFDGFIDLDGYDAIAL 120

Query: 119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAK 163
           +++GDGRCYISTIYTENWVNSPGQ EDNSWQ+FVF PKD+WY AK
Sbjct: 121 RIRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDSWYTAK 165

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562121|ref|NP_173178.3| putative complex I intermediate-associated protein 30 [Arabidopsis thaliana] gi|209572597|sp|Q9LQI7.2|CIA30_ARATH RecName: Full=Probable complex I intermediate-associated protein 30 gi|117168231|gb|ABK32198.1| At1g17350 [Arabidopsis thaliana] gi|332191455|gb|AEE29576.1| putative complex I intermediate-associated protein 30 [Arabidopsis thaliana]

 Score =  281 bits (719), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 132/170 (77%), Positives = 153/170 (90%), Gaps = 2/170 (1%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSRFR L QAS+NATK+ALTWN+EE +PP+E++IF F+SKE+LKKWHLYSDSEYGGLSSA
Sbjct: 1   MSRFRSLLQASVNATKKALTWNVEEWVPPAEKHIFKFHSKEDLKKWHLYSDSEYGGLSSA 60

Query: 61  SLEITESGNGMN--GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
           SLEI + G+G +  G+FSGNLS+DLSEGSKWNISRSGFCGMRSKKFDGFIDLD YD IA+
Sbjct: 61  SLEIPDKGDGSDCTGVFSGNLSVDLSEGSKWNISRSGFCGMRSKKFDGFIDLDGYDAIAL 120

Query: 119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKMQRWR 168
           +++GDGRCYISTIYTENWVNSPGQ EDNSWQ+FVF PKD+WY AK+   R
Sbjct: 121 RIRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDSWYTAKIPLAR 170

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115439685|ref|NP_001044122.1| Os01g0727400 [Oryza sativa Japonica Group] gi|57899102|dbj|BAD86921.1| auxin-induced-related / indole-3-acetic acid induced-related-like [Oryza sativa Japonica Group] gi|57899739|dbj|BAD87459.1| auxin-induced-related / indole-3-acetic acid induced-related-like [Oryza sativa Japonica Group] gi|113533653|dbj|BAF06036.1| Os01g0727400 [Oryza sativa Japonica Group] gi|215686775|dbj|BAG89625.1| unnamed protein product [Oryza sativa Japonica Group] gi|218188988|gb|EEC71415.1| hypothetical protein OsI_03593 [Oryza sativa Indica Group]

 Score =  280 bits (717), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 131/168 (77%), Positives = 151/168 (89%), Gaps = 4/168 (2%)

Query: 1   MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
           MSR R LWQAS+NAT+RA+ WN E+L+PPSE+YIFNFNSK+ELK+WHLYSDSEYGGLSSA
Sbjct: 1   MSRLRALWQASVNATRRAIVWNSEDLIPPSEKYIFNFNSKDELKRWHLYSDSEYGGLSSA 60

Query: 61  SLEITESGNGMN----GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTI 116
           SLEIT+ G G +    G+FSGNLSLD+SEGS W I RSGFCGMRSKKF+GFIDLD+YDTI
Sbjct: 61  SLEITDGGAGGDTSSTGLFSGNLSLDMSEGSTWKIRRSGFCGMRSKKFNGFIDLDAYDTI 120

Query: 117 AMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKM 164
           AMKL+GDGRCYISTIYTENWVNSPGQQEDNSWQ+FV++P+D W I K+
Sbjct: 121 AMKLRGDGRCYISTIYTENWVNSPGQQEDNSWQAFVYLPQDRWQIMKI 168

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2029100	236	AT1G17350 "AT1G17350" [Arabido	0.970	0.690	0.793	2.5e-72
TAIR|locus:2193937	228	AT1G72420 "AT1G72420" [Arabido	0.976	0.719	0.789	1.4e-71
UNIPROTKB|F1SSV5	263	NDUFAF1 "Uncharacterized prote	0.755	0.482	0.289	2.2e-10
FB|FBgn0039689	296	CG7598 [Drosophila melanogaste	0.613	0.347	0.310	3.4e-10
UNIPROTKB|E1BZH1	303	NDUFAF1 "Uncharacterized prote	0.684	0.379	0.265	1.7e-09
UNIPROTKB|E1BAZ2	328	NDUFAF1 "Uncharacterized prote	0.738	0.378	0.291	3.4e-09
ASPGD|ASPL0000075999	393	AN4740 [Emericella nidulans (t	0.761	0.325	0.265	4e-09
CGD|CAL0004155	227	orf19.3353 [Candida albicans (	0.684	0.506	0.341	1.9e-08
UNIPROTKB|Q5A9Q4	227	CIA30 "Potential mitochondrial	0.684	0.506	0.341	1.9e-08
RGD|1306202	330	Ndufaf1 "NADH dehydrogenase (u	0.625	0.318	0.295	2.1e-08

TAIR|locus:2029100 AT1G17350 "AT1G17350" [Arabidopsis thaliana (taxid:3702)]

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 131/165 (79%), Positives = 151/165 (91%)

Query:     1 MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
             MSRFR L QAS+NATK+ALTWN+EE +PP+E++IF F+SKE+LKKWHLYSDSEYGGLSSA
Sbjct:     1 MSRFRSLLQASVNATKKALTWNVEEWVPPAEKHIFKFHSKEDLKKWHLYSDSEYGGLSSA 60

Query:    61 SLEITESGNGMN--GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
             SLEI + G+G +  G+FSGNLS+DLSEGSKWNISRSGFCGMRSKKFDGFIDLD YD IA+
Sbjct:    61 SLEIPDKGDGSDCTGVFSGNLSVDLSEGSKWNISRSGFCGMRSKKFDGFIDLDGYDAIAL 120

Query:   119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAK 163
             +++GDGRCYISTIYTENWVNSPGQ EDNSWQ+FVF PKD+WY AK
Sbjct:   121 RIRGDGRCYISTIYTENWVNSPGQSEDNSWQAFVFAPKDSWYTAK 165

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2193937 AT1G72420 "AT1G72420" [Arabidopsis thaliana (taxid:3702)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 131/166 (78%), Positives = 146/166 (87%)

Query:     1 MSRFRGLWQASLNATKRALTWNLEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSA 60
             MSRFR LWQAS+NATK+ALTW LEE +PP E+ IF FNSKE+LK WHLYSDSEYGGLSSA
Sbjct:     1 MSRFRSLWQASVNATKKALTWELEEWVPPVEKCIFKFNSKEDLKTWHLYSDSEYGGLSSA 60

Query:    61 SLEITESGN--GMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYDTIAM 118
             SLEI + GN    NG+FSGNLS D+ EGSKWNI+RSGFCGMRSKKFDGFIDL+ YD+IA+
Sbjct:    61 SLEIKDGGNRSDCNGVFSGNLSTDMREGSKWNINRSGFCGMRSKKFDGFIDLEGYDSIAL 120

Query:   119 KLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKM 164
             +LKGDGRCYISTIYTENWVNSPGQ EDNSWQ+FVF PK NWY AK+
Sbjct:   121 RLKGDGRCYISTIYTENWVNSPGQAEDNSWQAFVFAPKGNWYTAKV 166

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1SSV5 NDUFAF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 149 (57.5 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 40/138 (28%), Positives = 73/138 (52%)

Query:    23 LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
             L E++    + ++ F  KE+L KW + SD   GG S A L++ +  N  + +  G LS +
Sbjct:   119 LHEVLLEQAKVVWQFRGKEDLDKWIVTSDKTIGGRSEAFLKMGK--NNQSALLYGTLSSE 176

Query:    83 LSEGSKWNISRSGFCGMRSKKFDGFIDLD-SYD-----TIAMKLKGDGRCYISTIYTE-N 135
               +  +    RSG+C M SK   G  ++  SYD     T+ ++++GDGR ++  I  + +
Sbjct:   177 APQDGE--SGRSGYCAMISKVPRGPFEIKKSYDWSQFNTLYLRVRGDGRPWMVNIREDTD 234

Query:   136 WVNSPGQQEDNSWQSFVF 153
              +    Q++D+ +  F+F
Sbjct:   235 IIQRSNQRKDHMYSYFMF 252

GO:0005739 "mitochondrion" evidence=IEA

FB|FBgn0039689 CG7598 [Drosophila melanogaster (taxid:7227)]

 Score = 149 (57.5 bits), Expect = 3.4e-10, P = 3.4e-10
 Identities = 36/116 (31%), Positives = 68/116 (58%)

Query:    29 PSER-YIFNFNSKEELKKWHLYSDSEYG-GLSSASLEITESGNGMNGIFSGNLSLDLSEG 86
             P E   +F+F + + L KW + +D+++G G S+A+LE++ +G G+   F G ++ D ++ 
Sbjct:    85 PGETDVVFDFKAPDVLDKWTVTTDADHGEGKSTATLELSAAGAGL---FHGQVNSDHTKD 141

Query:    87 SKWNISRSGFCGMRSK------KFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENW 136
                 I R+G+  +R+K      K +   D   Y+ + MK++GDGR Y+  ++TE +
Sbjct:   142 GI--IKRTGYANIRTKRVRKSFKRETTYDWTQYNMLVMKVRGDGRSYLINLHTEGY 195

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0017004 "cytochrome complex assembly" evidence=NAS

GO:0006119 "oxidative phosphorylation" evidence=ISS

UNIPROTKB|E1BZH1 NDUFAF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 143 (55.4 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 34/128 (26%), Positives = 69/128 (53%)

Query:    32 RYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNI 91
             + ++ F ++E+L KW + SD E GG S   L++  +  G   +  G L+ ++    +   
Sbjct:   101 KVMWEFRTQEDLNKWVISSDVEIGGKSEVYLKLGRNNQG--AMLYGILNTEVPRDGETKY 158

Query:    92 SRSGFCGMRSKKFDG------FIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQED 145
             S  G+C MR+K   G      + D  +++ + ++++GDGR ++  IYT+ + +    Q+D
Sbjct:   159 S--GYCSMRAKPAVGSFARKKYYDWSNFNCLYLRVRGDGRAWMVNIYTDPYFS---HQKD 213

Query:   146 NSWQSFVF 153
             + +  F+F
Sbjct:   214 DLYNYFMF 221

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E1BAZ2 NDUFAF1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 141 (54.7 bits), Expect = 3.4e-09, P = 3.4e-09
 Identities = 40/137 (29%), Positives = 71/137 (51%)

Query:    23 LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
             L E++    + ++ F SKE+L KW + SD   GG S   L++ +  N  + +  G LS +
Sbjct:   114 LHEVLMEQAKVVWQFRSKEDLDKWTVTSDKVIGGRSEVFLKMGK--NNQSALLYGTLSSE 171

Query:    83 LSEGSKWNISRSGFCGMRSKKFDGFIDLD-SYD-----TIAMKLKGDGRCYISTIYTENW 136
               +  +    RSG+C M SK   G  ++  SYD     T+ ++++GDGR ++  I  +  
Sbjct:   172 APQDGE--SGRSGYCAMVSKIPRGPFEMKRSYDWSQFNTLYLRVRGDGRPWMVNIREDTD 229

Query:   137 VNSPGQQEDNSWQSFVF 153
             +    Q++D  +  F+F
Sbjct:   230 II---QKKDQMYSYFMF 243

GO:0005739 "mitochondrion" evidence=IEA

ASPGD|ASPL0000075999 AN4740 [Emericella nidulans (taxid:162425)]

 Score = 142 (55.0 bits), Expect = 4.0e-09, P = 4.0e-09
 Identities = 38/143 (26%), Positives = 67/143 (46%)

Query:     6 GLWQASLNATKRA--LTWNLEELMPPSERY-IFNFNSKEELKKWHLYSDSEYGGLSSASL 62
             G ++ S     R   + WN E L  P++ Y + +F  +  +      +D   GG S+ASL
Sbjct:    14 GFFKRSAEELSRLSRIAWNTEALSTPTKPYTLLDFEDEASVASCKTMADRAVGGFSTASL 73

Query:    63 EITESGNGMN----GIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFI------DLDS 112
             +   + +  N      F G +S  L   + W + R+G+   R++    ++      DLD 
Sbjct:    74 DYIPADSSTNTPAHARFHGTISTKLP--NNWRVERTGYAAFRNQDRGFWLFGRLYWDLDP 131

Query:   113 YDTIAMKLKGDGRCYISTIYTEN 135
             Y  +A+++K DGR Y   +YT +
Sbjct:   132 YTYLALRVKSDGRRYTHRLYTRH 154

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0004155 orf19.3353 [Candida albicans (taxid:5476)]

 Score = 130 (50.8 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 44/129 (34%), Positives = 65/129 (50%)

Query:    12 LNATKRALTWNLEELMPPSERYIFNFNSKEE--LKKWHLYSDSEYGGLSSASLEITESGN 69
             LNATK        EL  P +  + NF  + E  L +    SD E GG S+ + +I    +
Sbjct:     8 LNATKSIFA-KQAELTRPVQS-VLNFKREPEKSLDQVLTRSDQELGGYSTVNFDIDPKEH 65

Query:    70 GMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKK------F-DGFIDLDSYDTIAMKLKG 122
                G F GNLSLDL + +   ++RSG+   R+K       F D F D  +Y ++ +++KG
Sbjct:    66 C--GHFYGNLSLDLPKDNP-QVTRSGYAMFRTKDQNQSWLFGDSFWDWTNYSSLVLRVKG 122

Query:   123 DGRCYISTI 131
             D R Y+  I
Sbjct:   123 DRRKYLVNI 131

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A9Q4 CIA30 "Potential mitochondrial Complex I assembly chaperone" [Candida albicans SC5314 (taxid:237561)]

 Score = 130 (50.8 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 44/129 (34%), Positives = 65/129 (50%)

Query:    12 LNATKRALTWNLEELMPPSERYIFNFNSKEE--LKKWHLYSDSEYGGLSSASLEITESGN 69
             LNATK        EL  P +  + NF  + E  L +    SD E GG S+ + +I    +
Sbjct:     8 LNATKSIFA-KQAELTRPVQS-VLNFKREPEKSLDQVLTRSDQELGGYSTVNFDIDPKEH 65

Query:    70 GMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKK------F-DGFIDLDSYDTIAMKLKG 122
                G F GNLSLDL + +   ++RSG+   R+K       F D F D  +Y ++ +++KG
Sbjct:    66 C--GHFYGNLSLDLPKDNP-QVTRSGYAMFRTKDQNQSWLFGDSFWDWTNYSSLVLRVKG 122

Query:   123 DGRCYISTI 131
             D R Y+  I
Sbjct:   123 DRRKYLVNI 131

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1306202 Ndufaf1 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 134 (52.2 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 34/115 (29%), Positives = 62/115 (53%)

Query:    23 LEELMPPSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLD 82
             L E++    R ++ F  KE+L KW L SD   GG S   L++++  N  + +  G LS +
Sbjct:   116 LHEVIMEQARVVWQFREKEDLDKWILTSDKTIGGRSEIFLKMSK--NNRSALLYGTLSSE 173

Query:    83 LSEGSKWNISRSGFCGMRSK----KFDGFIDLD--SYDTIAMKLKGDGRCYISTI 131
               +  + N  +SG+C M S+     F+  +  D   ++T+ ++++GDGR ++  I
Sbjct:   174 APQDGESN--QSGYCAMISRIPRGAFERKLSYDWSQFNTLYLRVRGDGRPWMVNI 226

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LQI7	CIA30_ARATH	No assigned EC number	0.7764	1.0	0.7400	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_X5562 hypothetical protein (226 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
pfam08547	156	pfam08547, CIA30, Complex I intermediate-associate	1e-33

>gnl|CDD|219896 pfam08547, CIA30, Complex I intermediate-associated protein 30 (CIA30)

 Score =  115 bits (291), Expect = 1e-33
 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 18/130 (13%)

Query: 35  FNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRS 94
           F+F   E+L  W   +D+  GG+S++SL ++  G     +FSGNLSL+         +  
Sbjct: 1   FDFTQPEDLDDWTAVNDTVMGGVSTSSLTLSPDGTA---VFSGNLSLE---------NNG 48

Query: 95  GFCGMRSKKFDGFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFV 154
           GF  +R+K     +DL  Y  + +++KGDGR Y   + TE+  +        S+Q+    
Sbjct: 49  GFASVRTKNRKPPLDLSGYTGLELRVKGDGRTYKFNLKTEDEFDGL------SYQADFDT 102

Query: 155 PKDNWYIAKM 164
               W   K+
Sbjct: 103 KPGEWQTVKI 112

This protein is associated with mitochondrial Complex I intermediate-associated protein 30 (CIA30) in human and mouse. The family is also present in Schizosaccharomyces pombe which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that this family of protein may not be directly involved in oxidative phosphorylation. Length = 156

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
PF08547	157	CIA30: Complex I intermediate-associated protein 3	100.0
KOG2435	323	consensus Uncharacterized conserved protein [Funct	100.0
PF03425	178	CBM_11: Carbohydrate binding domain (family 11); I	98.45

>PF08547 CIA30: Complex I intermediate-associated protein 30 (CIA30); InterPro: IPR013857 Mitochondrial complex I intermediate-associated protein 30 (CIA30) is present in human and mouse, and also in Schizosaccharomyces pombe (Fission yeast) which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits

Probab=100.00  E-value=3.2e-34  Score=221.56  Aligned_cols=116  Identities=34%  Similarity=0.671  Sum_probs=105.4

Q ss_pred             EecCCccccCCeEEeccceecceeeEEEEEecCCCcceEEEEEEEecccCCCCccccccceEEEEeeCCCCCCCCCCCCC
Q 030943           35 FNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFIDLDSYD  114 (168)
Q Consensus        35 ~~F~~~~~~~~W~~~sD~vmGG~S~~~~~~~~~~~~~~~~F~G~lS~~~p~~~~~~~~~gGFasvrs~~~~~~~dls~y~  114 (168)
                      |+|+++++++.|++++|.||||.|+|++.+.+++  .+++|+|+||++         |+||||+||+......+||+.|+
T Consensus         1 f~F~~~~~~~~W~~~~D~vmGG~S~~~~~~~~~~--~~~~F~G~ls~~---------~~~GFa~~r~~~~~~~~dls~y~   69 (157)
T PF08547_consen    1 FDFNSPQDLENWRVVSDTVMGGVSTASLEFSPED--GSAVFSGNLSTE---------NNGGFASVRTPSFPSPLDLSGYD   69 (157)
T ss_pred             CcCCCChhhCCeEEEcceEeCCeEEEEEEEECCC--CEEEEEEEEecC---------CCCceEEEEEccCCCcCCCCCCc
Confidence            6899999999999999999999999999997532  279999999999         89999999994345689999999


Q ss_pred             eEEEEEeecCcEEEEEEEeCCCcCCCCCCCCCceEEEEEcCCCCEEEEEEecC
Q 030943          115 TIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKMQRW  167 (168)
Q Consensus       115 gl~lrvrGDGr~Y~l~l~t~~~~~~~~~~~~~~~q~~~ft~~g~Wqtv~iPfs  167 (168)
                      ||+|+||||||+|+++|++++..      +.+.|++.+.+++++|++|+|||+
T Consensus        70 ~l~l~vrgdGr~Y~~~l~~~~~~------~~~~y~~~f~t~~~~w~~v~iPFs  116 (157)
T PF08547_consen   70 GLELRVRGDGRTYKVNLRTDNDE------PSDSYQARFQTPPGEWQTVRIPFS  116 (157)
T ss_pred             EEEEEEEcCCceEEEEEEeCCCC------CCceEEEEEeccCCccEEEEEEHH
Confidence            99999999999999999999763      577999999999999999999996

This means it is possible that it is not directly involved in oxidative phosphorylation [, ].

>KOG2435 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.2e-34  Score=234.90  Aligned_cols=143  Identities=36%  Similarity=0.693  Sum_probs=129.9

Q ss_pred             hcccccccCC------CCccEEEecCCccccCCeEEeccceecceeeEEEEEecCCCcceEEEEEEEecccCCCCccccc
Q 030943           19 LTWNLEELMP------PSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNIS   92 (168)
Q Consensus        19 ~~~~~~~~~p------~~~~~l~~F~~~~~~~~W~~~sD~vmGG~S~~~~~~~~~~~~~~~~F~G~lS~~~p~~~~~~~~   92 (168)
                      +.|+.++-.|      ++++++|+|+.+++++.|++.||...||.|+|.|++.+.+  +.++|+|++|++.|+++  .++
T Consensus       100 l~w~~eE~~pllevr~~eakvvf~F~~kEdLdkWtv~sDsd~gG~StasLe~sd~G--~~alf~G~~ss~~~kdg--~i~  175 (323)
T KOG2435|consen  100 LHWRGEEGHPLLEVRLEEAKVVFQFRGKEDLDKWTVTSDSDIGGRSTASLEMSDNG--QSALFYGTLSSEAPKDG--EIT  175 (323)
T ss_pred             HHhccccCccceeecCCcceEEEEccChhhcceeEeecccccCCeeeEEEEecCCC--cceeeccccccccccCc--cee
Confidence            4588887777      8999999999999999999999999999999999996653  47999999999999998  589


Q ss_pred             cceEEEEeeCC---CC--CCCCCCCCCeEEEEEeecCcEEEEEEEeCCCcCCCCCCCCCceEEEEEcCCC-CEEEEEEec
Q 030943           93 RSGFCGMRSKK---FD--GFIDLDSYDTIAMKLKGDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKD-NWYIAKMQR  166 (168)
Q Consensus        93 ~gGFasvrs~~---~~--~~~dls~y~gl~lrvrGDGr~Y~l~l~t~~~~~~~~~~~~~~~q~~~ft~~g-~Wqtv~iPf  166 (168)
                      ++|||+||+++   |.  ..+|++.|+.|.||||||||.|++||+++++++   ++++++|++++||++| .||.++|||
T Consensus       176 RsGyc~Mrs~~RkaF~rk~~~dw~qfn~L~LrvRGDGRsy~inihte~~~d---q~wndsys~flft~gGp~wq~~KIPf  252 (323)
T KOG2435|consen  176 RSGYCAMRSRPRKAFERKMSYDWSQFNTLYLRVRGDGRSYMINIHTETDFD---QRWNDSYSYFLFTRGGPYWQEVKIPF  252 (323)
T ss_pred             eeeeeeeeccchhhhcceecccccccceEEEEEecCCceEEEEecCccchh---hhcccceeeEEecCCCCceeEEecch
Confidence            99999999964   42  358899999999999999999999999999987   5899999999999988 999999999


Q ss_pred             CC
Q 030943          167 WR  168 (168)
Q Consensus       167 s~  168 (168)
                      ++
T Consensus       253 SK  254 (323)
T KOG2435|consen  253 SK  254 (323)
T ss_pred             hh
Confidence            85

>PF03425 CBM_11: Carbohydrate binding domain (family 11); InterPro: IPR005087 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=98.45  E-value=2.7e-06  Score=66.91  Aligned_cols=112  Identities=20%  Similarity=0.272  Sum_probs=55.0

Q ss_pred             CccEEEecCCccc----cCCeEEeccceecceeeEEEEEecCCCcceEEEEEEEecccCCCCccccccceEEEEeeCCCC
Q 030943           30 SERYIFNFNSKEE----LKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFD  105 (168)
Q Consensus        30 ~~~~l~~F~~~~~----~~~W~~~sD~vmGG~S~~~~~~~~~~~~~~~~F~G~lS~~~p~~~~~~~~~gGFasvrs~~~~  105 (168)
                      .+.+|.||.+...    ...|...+|...++.++..-   +.+ +..+.++.. ..          ..++++++....  
T Consensus         3 ~~~~IDDFE~~~~~~~l~~~w~s~~~~~~~~~~~~~~---~~~-~~~l~~~y~-~~----------~~~~~~~v~~~l--   65 (178)
T PF03425_consen    3 PPLLIDDFEDYDGDNALQGAWYSYNDDGPGLSLTISD---PDG-GKALAISYD-GG----------GSGGWAGVTKDL--   65 (178)
T ss_dssp             SEEEEE-SSSS----------EEEEETT-EEEEEEEE----SS-SEEEEEEEE-------------SS-EEEEE-EE---
T ss_pred             ccceeEcccCCCCccceeeeeeccCCCCceeEEEeeC---CCC-CcEEEEEEe-cC----------CCCceEEEecCC--
Confidence            4678899987532    24699888876665444333   222 334566665 22          477888886553  


Q ss_pred             CCCCCCCCCeEEEEEeecC--cEEEEEEEeCCCcCCCCCCCCCceEEEEEcCCCCEEEEEEecC
Q 030943          106 GFIDLDSYDTIAMKLKGDG--RCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKMQRW  167 (168)
Q Consensus       106 ~~~dls~y~gl~lrvrGDG--r~Y~l~l~t~~~~~~~~~~~~~~~q~~~ft~~g~Wqtv~iPfs  167 (168)
                      ..-|+|.|+||.+.+||||  ++..|.|+....        .+.|.+ .++...+|++|+|||+
T Consensus        66 ~~~DwS~~~gl~Fw~k~dgs~~~l~vqi~d~~~--------~e~~~~-~~~~~~~W~~V~IPF~  120 (178)
T PF03425_consen   66 DPGDWSGYGGLSFWIKGDGSGNKLRVQIKDGGD--------YEYWEA-SFTDSSTWKTVEIPFS  120 (178)
T ss_dssp             S----TT--EEEEEEEE------EEEEEEEE-E--------EEEEEE-EE---SS-EEEEEEGG
T ss_pred             CcCCcccCCcEEEEEEcCCCCcEEEEEEecCCc--------ceeeEe-ecCCCCcCEEEEEEHH
Confidence            3469999999999999776  555555555431        234554 3455556999999996

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM11 from CAZY which binds both beta-1,4-glucan and beta-1,3-1,4-mixed linked glucans.; GO: 0008810 cellulase activity, 0030245 cellulose catabolic process; PDB: 1V0A_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
1v0a_A	178	Endoglucanase H; carbohydrate binding module, cell	99.83
1wmx_A	205	COG3291: FOG: PKD repeat; CBM30, carbohydrate bind	91.27
1wky_A	464	Endo-beta-1,4-mannanase; TIM barrel, catalytic dom	86.0
3f95_A	193	Beta-glucosidase; beta-sandwich, hydrolase; 1.80A	85.28

>1v0a_A Endoglucanase H; carbohydrate binding module, cellulosome, cellulose degradation, hydrolase, glycosidase; 1.98A {Clostridium thermocellum} SCOP: b.18.1.30

Probab=99.83  E-value=2.5e-20  Score=146.02  Aligned_cols=113  Identities=15%  Similarity=0.218  Sum_probs=82.6

Q ss_pred             CCccEEEecCCccccCCeEEeccceecceeeEEEEEecCCCcceEEEEEEEecccCCCCccccc-cceEEEEeeCCCCCC
Q 030943           29 PSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNIS-RSGFCGMRSKKFDGF  107 (168)
Q Consensus        29 ~~~~~l~~F~~~~~~~~W~~~sD~vmGG~S~~~~~~~~~~~~~~~~F~G~lS~~~p~~~~~~~~-~gGFasvrs~~~~~~  107 (168)
                      ..+++|++|..+.   .|..++|.   |.|-+ +++.+..    ..+.++||++         | +|||+|||...  .+
T Consensus         5 ~~~~~i~df~~~~---~W~~v~Ds---~~s~s-~~~~~g~----~~~~l~VS~~---------N~nGGF~svr~n~--~~   62 (178)
T 1v0a_A            5 VGEKMLDDFEGVL---NWGSYSGE---GAKVS-TKIVSGK----TGNGMEVSYT---------GTTDGYWGTVYSL--PD   62 (178)
T ss_dssp             BSEEEEECSSSSC---CCEEEEET---TCEEE-EEEEECS----SSEEEEEEEE---------CCSSCEEEEEEEC--SC
T ss_pred             ccCcceecCCCCC---ceEEEcCC---CcEEE-EEEecCc----eeeEEEEEEe---------cCCCCEEEEEcCC--CC
Confidence            4566888886553   89999994   22222 5554432    3344499999         8 99999999753  57


Q ss_pred             CCCCCCCeEEEEEee---cCcEEEEEEEeCCCcCCCCCCCCCceEEEEEcCCCCEEEEEEecC
Q 030943          108 IDLDSYDTIAMKLKG---DGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKMQRW  167 (168)
Q Consensus       108 ~dls~y~gl~lrvrG---DGr~Y~l~l~t~~~~~~~~~~~~~~~q~~~ft~~g~Wqtv~iPfs  167 (168)
                      .|++.|+||+|+|+|   +|++|+|+||+....-   ..+...|++ .|++...|++|+|||+
T Consensus        63 ~d~s~~~GI~l~vkG~~~nG~~y~~~LR~~~~~~---~~~~~~y~~-sF~t~~~W~~IeIPFs  121 (178)
T 1v0a_A           63 GDWSKWLKISFDIKSVDGSANEIRFMIAEKSING---VGDGEHWVY-SITPDSSWKTIEIPFS  121 (178)
T ss_dssp             CCCTTCCEEEEEEEEC---CCCEEEEEEEECTTS---SSEEEEEEE-EECCCSSCEEEEEEGG
T ss_pred             CCHhHCCcEEEEEEcCCCCCCEEEEEEeeCCCCC---CCCCeeEEE-EecCCCcCEEEEEEHH
Confidence            999999999999999   6999999999975420   001234554 4666699999999997

>1wmx_A COG3291: FOG: PKD repeat; CBM30, carbohydrate binding module family30, CELJ, sugar BIN protein; 2.00A {Clostridium thermocellum} SCOP: b.18.1.24 PDB: 1wzx_A 2c24_A

Probab=91.27  E-value=3  Score=32.68  Aligned_cols=81  Identities=15%  Similarity=0.182  Sum_probs=54.5

Q ss_pred             EEEEEEecccCCCCccccccceEEEEeeCCC-CCCCCCCCC---CeEEEEEeec--CcEEEEEEEeCCCcCCCCCCCCCc
Q 030943           74 IFSGNLSLDLSEGSKWNISRSGFCGMRSKKF-DGFIDLDSY---DTIAMKLKGD--GRCYISTIYTENWVNSPGQQEDNS  147 (168)
Q Consensus        74 ~F~G~lS~~~p~~~~~~~~~gGFasvrs~~~-~~~~dls~y---~gl~lrvrGD--Gr~Y~l~l~t~~~~~~~~~~~~~~  147 (168)
                      .++=+|+.+         ++.|+.++-..+- -...||+.|   .+|++-|||.  |..+.|-+..+....    .....
T Consensus        50 sl~~~~~~~---------~~~~w~~~~~~l~~w~~~DLs~y~~nG~leF~IKG~~GGE~~~ig~~D~~~e~----~~g~~  116 (205)
T 1wmx_A           50 TLRLNVQTT---------VQSGWWISLLTLRGWNTHDLSQYVENGYLEFDIKGKEGGEDFVIGFRDKVYER----VYGLE  116 (205)
T ss_dssp             EEEEEECSC---------CCSSCEEEEEESSTTSCBCCGGGTTTCEEEEEEEESSSCCCCEEEEEECCTTC----TTCSS
T ss_pred             ceEEEeccc---------ccCceeEEEEeccCcceeehhhhhcCCeEEEEEecccCceeEEEEEecccccc----cCCce
Confidence            344456665         7888886654431 235788877   4899999994  799999999884321    12344


Q ss_pred             eEEEE----EcC-CCCEEEEEEecC
Q 030943          148 WQSFV----FVP-KDNWYIAKMQRW  167 (168)
Q Consensus       148 ~q~~~----ft~-~g~Wqtv~iPfs  167 (168)
                      -|...    +.. +.+||-|+||+.
T Consensus       117 ~~~~~~~~~yi~VttEwQHvsiPLk  141 (205)
T 1wmx_A          117 IDVTTVISNYVTVTTDWQHVKIPLR  141 (205)
T ss_dssp             CEEEEEGGGTCCCCSSCEEEEEEGG
T ss_pred             eEEEeechheEEeccccEEEEeeHH
Confidence            55544    333 559999999974

>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3

Probab=86.00  E-value=14  Score=31.87  Aligned_cols=109  Identities=17%  Similarity=0.179  Sum_probs=68.2

Q ss_pred             CCccEEEecCCccccCCeEEeccceecceeeEEEEEecCCCcceEEEEEEEecccCCCCccccccceEEEEeeCCCCCCC
Q 030943           29 PSERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFI  108 (168)
Q Consensus        29 ~~~~~l~~F~~~~~~~~W~~~sD~vmGG~S~~~~~~~~~~~~~~~~F~G~lS~~~p~~~~~~~~~gGFasvrs~~~~~~~  108 (168)
                      +.+.++++|....  +.|..-+  ..+|...+... ..+  | .....+.+.+.         ++.+|- +...   ...
T Consensus       312 ~~~~~~~df~~~~--~~w~~~~--~~~g~~~~~~~-~~~--g-~~sl~~~~~~~---------~~~~~~-~~~~---~~~  370 (464)
T 1wky_A          312 TSPTTLYDFEEST--QGWTGSS--LSRGPWTVTEW-SSK--G-NHSLKADIQMS---------SNSQHY-LHVI---QNR  370 (464)
T ss_dssp             --CEEEECCSSSC--TTEEEES--CSEEEEEESSC-CSS--T-TCEEEEEEEEC---------TTCEEE-EEEE---EEE
T ss_pred             CCCcccccccCCC--ccccccc--ccCCceeeccc-ccc--C-ceeEeeeeeec---------CCCceE-EEEe---ecc
Confidence            5567899998763  7899544  23443222111 112  2 24566677665         566663 5443   468


Q ss_pred             CCCCCCeEEEEEeec-------CcEEEEEEEeCCCcCCCCCCCCCceEE--EEEcCCCCEEEEEEecC
Q 030943          109 DLDSYDTIAMKLKGD-------GRCYISTIYTENWVNSPGQQEDNSWQS--FVFVPKDNWYIAKMQRW  167 (168)
Q Consensus       109 dls~y~gl~lrvrGD-------Gr~Y~l~l~t~~~~~~~~~~~~~~~q~--~~ft~~g~Wqtv~iPfs  167 (168)
                      |++.++.|.++|+-.       |=+=+|-++|...+         .|+-  .....+++|.++.|+++
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~~~~~---------~w~~~~~~~i~~~~~~~l~~~l~  429 (464)
T 1wky_A          371 SLQQNSRIQATVKHANWGSVGNGMTARLYVKTGHGY---------TWYSGSFVPINGSSGTTLSLDLS  429 (464)
T ss_dssp             CCTTCCEEEEEEEEC-------CEEEEEEEEETTTT---------EEEECCCEEECSSSCEEEEEECT
T ss_pred             CCCCcceEEEEEEeccCCCCCCCeeEEEEEEeCCCc---------eEecCCceEecCCCceEEEEEcc
Confidence            999999999999843       45677778887654         3443  12345679999999986

>3f95_A Beta-glucosidase; beta-sandwich, hydrolase; 1.80A {Pseudoalteromonas SP}

Probab=85.28  E-value=5.1  Score=31.05  Aligned_cols=50  Identities=10%  Similarity=0.185  Sum_probs=30.5

Q ss_pred             CCCCCCCC--eEEEEEeecC---cEEEEEEEeCCCcCCCCCCCCCceEEEE-E------cCCCCEEEEEEecC
Q 030943          107 FIDLDSYD--TIAMKLKGDG---RCYISTIYTENWVNSPGQQEDNSWQSFV-F------VPKDNWYIAKMQRW  167 (168)
Q Consensus       107 ~~dls~y~--gl~lrvrGDG---r~Y~l~l~t~~~~~~~~~~~~~~~q~~~-f------t~~g~Wqtv~iPfs  167 (168)
                      +.| +.|.  .|.|++|-|-   ..-.|.+.+....          -...+ .      .+.|+|++|+||++
T Consensus        78 ~~D-s~y~~~aL~fd~rvd~ap~~~v~L~m~Cg~~~----------C~~~vdit~~L~~~~~g~W~tv~IpL~  139 (193)
T 3f95_A           78 PLD-SKFSTGYLELKMRIDKAPEQGANLQVMCSESN----------CLRDIDFSSFSQLMADKSWHTLAIPLH  139 (193)
T ss_dssp             ECC-GGGTTCEEEEEEEEEECCTTCEEEEEEECSSC----------EEEEEEGGGTHHHHTTCCCEEEEEESC
T ss_pred             CcC-ChhhCceEEEEEEeecCCCCcEEEEEecCCCC----------ccceeehhHhhhhccCCCCEEEEEeCc
Confidence            356 6554  4888888652   3466677776420          11111 1      25789999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1v0aa1	167	Endoglucanase H {Clostridium thermocellum [TaxId:	99.59
d1wmxa_	173	Endoglucanase CelJ {Clostridium thermocellum [TaxI	94.88

>d1v0aa1 b.18.1.30 (A:4-170) Endoglucanase H {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM11
domain: Endoglucanase H
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.59  E-value=1.7e-14  Score=109.17  Aligned_cols=113  Identities=14%  Similarity=0.153  Sum_probs=78.8

Q ss_pred             CccEEEecCCccccCCeEEeccceecceeeEEEEEecCCCcceEEEEEEEecccCCCCccccccceEEEEeeCCCCCCCC
Q 030943           30 SERYIFNFNSKEELKKWHLYSDSEYGGLSSASLEITESGNGMNGIFSGNLSLDLSEGSKWNISRSGFCGMRSKKFDGFID  109 (168)
Q Consensus        30 ~~~~l~~F~~~~~~~~W~~~sD~vmGG~S~~~~~~~~~~~~~~~~F~G~lS~~~p~~~~~~~~~gGFasvrs~~~~~~~d  109 (168)
                      .+++|.||...   ..|..    ++|+.|++++.......+  .-+...+++.         ++|||..+|..   ...|
T Consensus         3 ge~vidDFe~~---~~W~~----~~~~~~~~~~~~~~~~~~--~~~~l~~~~~---------~~g~~~~~~~~---~~~D   61 (167)
T d1v0aa1           3 GEKMLDDFEGV---LNWGS----YSGEGAKVSTKIVSGKTG--NGMEVSYTGT---------TDGYWGTVYSL---PDGD   61 (167)
T ss_dssp             SEEEEECSSSS---CCCEE----EEETTCEEEEEEEECSSS--EEEEEEEECC---------SSCEEEEEEEC---SCCC
T ss_pred             ccEEEEcCcCC---cccee----cCCCCceEEEEecccCCC--ceEEEEEeee---------cCCcEEEEEec---CcCC
Confidence            68899999764   56964    566788888887665443  3344555554         66777666653   4689


Q ss_pred             CCCCCeEEEEEe---ecCcEEEEEEEeCCCcCCCCCCCCCceEEEEEcCCCCEEEEEEecC
Q 030943          110 LDSYDTIAMKLK---GDGRCYISTIYTENWVNSPGQQEDNSWQSFVFVPKDNWYIAKMQRW  167 (168)
Q Consensus       110 ls~y~gl~lrvr---GDGr~Y~l~l~t~~~~~~~~~~~~~~~q~~~ft~~g~Wqtv~iPfs  167 (168)
                      |+.|+||+|+||   |++++|.|+|++.....    .....|+...|+.+++||+|+|||+
T Consensus        62 ~s~~~gi~~~vkg~~G~~~~~~~~l~d~~~~~----~~~~~~~~~~f~~~~~W~~V~IPF~  118 (167)
T d1v0aa1          62 WSKWLKISFDIKSVDGSANEIRFMIAEKSING----VGDGEHWVYSITPDSSWKTIEIPFS  118 (167)
T ss_dssp             CTTCCEEEEEEEEC---CCCEEEEEEEECTTS----SSEEEEEEEEECCCSSCEEEEEEGG
T ss_pred             CccCCeEEEEEECCCCCceEEEEEEEcCCcCC----CCcccEEEEEEecCCccEEEEEEHH
Confidence            999999999999   78899999999875321    0111233345677889999999996

>d1wmxa_ b.18.1.24 (A:) Endoglucanase CelJ {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Family 30 carbohydrate binding module, CBM30 (PKD repeat)
domain: Endoglucanase CelJ
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.88  E-value=0.18  Score=36.73  Aligned_cols=72  Identities=13%  Similarity=0.112  Sum_probs=43.2

Q ss_pred             ccceEEEEeeCC-CCCCCCCCCCCe---EEEEEeec--CcEEEEEEEeCCCcCCCCCCCCCceEEEE----EcCCCCEEE
Q 030943           92 SRSGFCGMRSKK-FDGFIDLDSYDT---IAMKLKGD--GRCYISTIYTENWVNSPGQQEDNSWQSFV----FVPKDNWYI  161 (168)
Q Consensus        92 ~~gGFasvrs~~-~~~~~dls~y~g---l~lrvrGD--Gr~Y~l~l~t~~~~~~~~~~~~~~~q~~~----ft~~g~Wqt  161 (168)
                      +.++|.+ .... -....||++|..   |++.+|+.  +..+.+.+.+.....+  .+.. .-....    .+..++||+
T Consensus        53 ~~~w~g~-gl~~~~~~~~DlS~~~a~G~L~FdiK~~s~~~~~~igf~~~~~~~~--~~~~-~~~~~~~~~~~~vt~eW~~  128 (173)
T d1wmxa_          53 QSGWWIS-LLTLRGWNTHDLSQYVENGYLEFDIKGKEGGEDFVIGFRDKVYERV--YGLE-IDVTTVISNYVTVTTDWQH  128 (173)
T ss_dssp             CSSCEEE-EEESSTTSCBCCGGGTTTCEEEEEEEESSSCCCCEEEEEECCTTCT--TCSS-CEEEEEGGGTCCCCSSCEE
T ss_pred             CCCeeEE-EEEccCCccccchhhhcCCcEEEEEEccCCCcceEEEEEeccccCC--CceE-EecccCCcccceecCceEE
Confidence            3455544 3322 124689999954   99999976  4678888888654321  0111 111111    234789999


Q ss_pred             EEEecC
Q 030943          162 AKMQRW  167 (168)
Q Consensus       162 v~iPfs  167 (168)
                      +.||++
T Consensus       129 ~~ipl~  134 (173)
T d1wmxa_         129 VKIPLR  134 (173)
T ss_dssp             EEEEGG
T ss_pred             EEEEhH
Confidence            999986