Citrus Sinensis ID: 030947

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSLS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEccccccccccccEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccEEEEcHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccccccccEEEEEEccccccEEcccccEEEEEEEEEEEEEcccccccccccEEEEEEEccccccEEEccccccccccHHHHHHHHHHHHcccEEEEEHHHccccHHHccccEEEcHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccEcccc
Coil and Loop (DISEMBL)
MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRyqkgrrqvvgcipyrykCVKQSLDINEEDLEVLVISsqkgkgmlfpkggweIDESIQEAALRETIEEAGvtgivedqlaewpeknvrsrKWMSVAEARKVCQHWWMKEALDRLVMRLTSqqlhgkedsvgtcsls
Flexible Loop (DISEMBL)
MVALVAQETivslvtpenvvgnlvsrtgrhlqryqkgrrqvvgcipyRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGvtgivedqlaewpeknvrsrkwmSVAEARKVCQHWWMKEALDRLVMRLtsqqlhgkedsvgtcsls
Low Complexity Region (SEG)
MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSLS
Disordered region (IsUnstruct)
***LVAQETIVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT*****************
Disordered Region (DISOPRED)
*********************************YQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRL**********************
Disordered Region (DISEMBL)
MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ**************
Disordered Region (DISPRO)
MVA****ETIVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTS****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q9ZU95	182	Nudix hydrolase 17, mitoc	yes	no	0.851	0.785	0.511	9e-40
Q9LQU5	176	Nudix hydrolase 18, mitoc	no	no	0.809	0.772	0.527	5e-38
Q9LE73	207	Nudix hydrolase 4 OS=Arab	no	no	0.785	0.637	0.509	6e-38
Q8VY81	198	Nudix hydrolase 21, chlor	no	no	0.827	0.702	0.494	2e-36
Q52K88	202	Nudix hydrolase 13, mitoc	no	no	0.863	0.717	0.382	8e-26
Q93ZY7	203	Nudix hydrolase 12, mitoc	no	no	0.833	0.689	0.379	2e-23
Q9LHK1	180	Nudix hydrolase 16, mitoc	no	no	0.714	0.666	0.443	3e-23
Q09790	210	Diphosphoinositol polypho	yes	no	0.511	0.409	0.346	8e-07

>sp|Q9ZU95|NUD17_ARATH Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1

 Score =  162 bits (410), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 88/172 (51%), Positives = 110/172 (63%), Gaps = 29/172 (16%)

Query: 23  LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGG 82
           L SRTGR  QRY KGRRQVVGC+PYR+K +     I++E +EVLVISSQKG  ++FPKGG
Sbjct: 9   LASRTGRQFQRYNKGRRQVVGCVPYRFK-LSNDGKISDE-VEVLVISSQKGHALMFPKGG 66

Query: 83  WEIDESIQEAALRETIEEAGVTGIVEDQLAE---------------------------WP 115
           WE+DES++EAA RE +EEAGV G VE QL +                           WP
Sbjct: 67  WELDESVEEAASRECLEEAGVLGNVEHQLGKWDFLSKSRGTYYEGLMFPMLVTEQLELWP 126

Query: 116 EKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVGTCSL 167
           E++VR R WM+V EAR+ C+ WWMKEALD LV RL+S     KE+   + S+
Sbjct: 127 EQHVRQRIWMNVTEAREACRDWWMKEALDVLVERLSSPMNQPKEEKTMSISI 178

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q9LQU5|NUD18_ARATH Nudix hydrolase 18, mitochondrial OS=Arabidopsis thaliana GN=NUDT18 PE=2 SV=1

 Score =  156 bits (395), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 87/165 (52%), Positives = 104/165 (63%), Gaps = 29/165 (17%)

Query: 23  LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGG 82
           LVSRTGR  QRY KGRRQVVGCIPYR K +     I++E  EVLVISSQKG  ++FPKGG
Sbjct: 4   LVSRTGRQSQRYNKGRRQVVGCIPYRLK-ISSDGTISDE-FEVLVISSQKGHALMFPKGG 61

Query: 83  WEIDESIQEAALRETIEEAGVTGIVEDQLAE---------------------------WP 115
           WE+DES++EAA RE++EEAGV G VE QL +                           WP
Sbjct: 62  WELDESVEEAASRESLEEAGVVGNVERQLGKWDFLSKSKGTFYEGFMFPMLVKEELELWP 121

Query: 116 EKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKED 160
           E+++R R WM V EAR  C+ WWMKEALD LV RL+   L   E+
Sbjct: 122 EQHLRQRIWMKVDEARDACRDWWMKEALDVLVQRLSLLSLKPMEE 166

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LE73|NUDT4_ARATH Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1

 Score =  156 bits (394), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 84/165 (50%), Positives = 111/165 (67%), Gaps = 33/165 (20%)

Query: 14  VTPENV--VGNLVSRTGRHLQRY-QKGRRQVVGCIPYRYKCVKQSLD-INEEDLEVLVIS 69
           V P  +  V +LVSRTGR LQRY   G RQVVGC+PYRYK  KQ ++ +  + ++VL++S
Sbjct: 32  VVPAQIEKVVSLVSRTGRDLQRYDHAGYRQVVGCVPYRYK--KQEVNGVETQVIQVLLVS 89

Query: 70  SQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAE---------------- 113
           +QKGKGMLFPKGGWE DES++EAALRETIEEAGVTG +E++L +                
Sbjct: 90  AQKGKGMLFPKGGWETDESMEEAALRETIEEAGVTGELEEKLGKWQYKSKRHSIIHDGYM 149

Query: 114 -----------WPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 147
                      WPE  +R R+W+S+ EAR+VCQ+WWM+EAL+  +
Sbjct: 150 FALLVSQEFERWPEAEMRQRRWVSLDEAREVCQNWWMREALEAFI 194

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q8VY81|NUD21_ARATH Nudix hydrolase 21, chloroplastic OS=Arabidopsis thaliana GN=NUDT21 PE=2 SV=1

 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/174 (49%), Positives = 108/174 (62%), Gaps = 35/174 (20%)

Query: 5   VAQETIVSLVTPENVVGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDL 63
           +  + IV + TP   V +LVSRTGR LQRY   G RQVVGC+PYRYK           ++
Sbjct: 26  IPSKKIVPVPTPSEKVVSLVSRTGRDLQRYNTAGYRQVVGCVPYRYK------KHGGGEI 79

Query: 64  EVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAE--------- 113
           EVL+IS+QK GKGML PKGGWEIDESI+EAALRETIEEAGVTG +E+ L +         
Sbjct: 80  EVLLISAQKKGKGMLLPKGGWEIDESIEEAALRETIEEAGVTGQLEESLGKWQYKSKRHT 139

Query: 114 ------------------WPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMR 149
                             WPE   R RKW+S++EA ++CQ+ WM+EAL+  + R
Sbjct: 140 MIHDGHMFPLLVSQQFEIWPESEFRQRKWVSLSEAIELCQNSWMREALEAFINR 193

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q52K88|NUD13_ARATH Nudix hydrolase 13, mitochondrial OS=Arabidopsis thaliana GN=NUDT13 PE=1 SV=1

 Score =  116 bits (290), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 104/191 (54%), Gaps = 46/191 (24%)

Query: 20  VGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQ------SLDINEEDLEVLVISSQKG 73
           + NL +RTGR  QRY    R V GCIPYR   VK       S+D  E  L+VL+ISS   
Sbjct: 1   MSNLSARTGRDHQRYDNNFRLVSGCIPYRL--VKDEEEDSTSVDF-ENKLQVLMISSPNR 57

Query: 74  KGMLFPKGGWEIDESIQEAALRETIEEAGVTGI--------------------------- 106
             ++FPKGGWE DE++ EAA RE +EEAGV GI                           
Sbjct: 58  HDLVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGGG 117

Query: 107 ---------VEDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHG 157
                    V+++LA WPE++ R R+W++V EA ++C++ WM+ AL+   +R+ +++   
Sbjct: 118 CKGYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQSALEEF-LRVMAEEGST 176

Query: 158 KEDSVGTCSLS 168
           KEDS+   S+S
Sbjct: 177 KEDSLAISSIS 187

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use diadenosine 5',5'''-P(1)P(6) hexaphosphate (Ap(6)A), diadenosine 5',5'''-P(1)P(5) pentaphosphate (Ap(5)A) and adenosine tetraphosphate (p(4)A) as substrates, but not diadenosine 5',5'''-P(1)P(4) tetraphosphate (Ap(4)A), diadenosine 5',5'''-P(1)P(3) triphosphate (Ap(3)A), deoxyribonucleoside triphosphates, ribonucleoside triphosphates, diphosphoinositol pentakisphosphate (PP-InsP(5)) and 5-phospho-alpha-D-ribosyl diphosphate (PRPP).

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q93ZY7|NUD12_ARATH Nudix hydrolase 12, mitochondrial OS=Arabidopsis thaliana GN=NUDT12 PE=2 SV=1

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 96/187 (51%), Gaps = 47/187 (25%)

Query: 23  LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED--------LEVLVISSQKGK 74
           L SRTGR  QRY    R V GCIPYR        D  EED        LEVL++SS    
Sbjct: 4   LSSRTGRDRQRYDNNFRLVSGCIPYRL----MKADETEEDSGVDFVNKLEVLMVSSPNRH 59

Query: 75  GMLFPKGGWEIDESIQEAALRETIEEAGVTGI-----------------VEDQ------- 110
            ++FPKGGWE DE++ EAA RE IEEAGV GI                 VED+       
Sbjct: 60  DLVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECLGGCKG 119

Query: 111 ----------LAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ-QLHGKE 159
                     L +WPE+  R R+W++V EA ++C++ WM+ AL+  +  +  + +L  +E
Sbjct: 120 YMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRALEEFLRVMEDERRLRTEE 179

Query: 160 DSVGTCS 166
           ++V   S
Sbjct: 180 ETVHDSS 186

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LHK1|NUD16_ARATH Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1

 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 92/158 (58%), Gaps = 38/158 (24%)

Query: 22  NLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED---LEVLVISSQKGKGMLF 78
           +LV+RTGR  QRY+ G R V GCIP+RY  V    D N E    ++VL+ISS  G G+LF
Sbjct: 3   DLVARTGRLQQRYEDGSRLVAGCIPFRY--VNSDKDGNSESGKVIQVLMISSSSGPGLLF 60

Query: 79  PKGGWEIDESIQEAALRETIEEAGVTGI-------------------------------- 106
           PKGGWE DE+++EAA RE +EEAGV GI                                
Sbjct: 61  PKGGWENDETVREAAAREAVEEAGVRGILMDFLGNYEFKSKSHQDEFSPEGLCKAAMYAL 120

Query: 107 -VEDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEAL 143
            V+++LA WPE   R+RKW+++ EA + C+H WMK+AL
Sbjct: 121 YVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDAL 158

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q09790|APS1_SCHPO Diphosphoinositol polyphosphate phosphohydrolase aps1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=aps1 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 12/98 (12%)

Query: 22  NLVSRTGRHLQRYQK--GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFP 79
           ++ SR GR   R+    G R   G +         +L  ++  + +LV S++K    + P
Sbjct: 23  SMTSREGRTKNRFNPITGARLAAGVV---------ALSADKRKV-LLVSSAKKHPSWVVP 72

Query: 80  KGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPEK 117
           KGGWE DES+Q+AALRE  EE G+ G +   L  + +K
Sbjct: 73  KGGWEADESVQQAALREGWEEGGLVGHITRSLGSFKDK 110

Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate) and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate). Also catalyzes the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
224065132	193	predicted protein [Populus trichocarpa]	0.934	0.813	0.6	2e-51
357460851	195	Nudix hydrolase [Medicago truncatula] gi	0.892	0.769	0.629	2e-51
217075388	195	unknown [Medicago truncatula]	0.892	0.769	0.629	3e-51
449445094	185	PREDICTED: nudix hydrolase 18, mitochond	0.934	0.848	0.596	2e-50
255580361	193	diphosphoinositol polyphosphate phosphoh	0.863	0.751	0.626	2e-50
359488225	182	PREDICTED: nudix hydrolase 18, mitochond	0.857	0.791	0.632	4e-50
224079516	188	predicted protein [Populus trichocarpa]	0.904	0.808	0.589	5e-50
351726568	211	uncharacterized protein LOC100500105 [Gl	0.875	0.696	0.613	2e-49
356569788	199	PREDICTED: nudix hydrolase 17, mitochond	0.869	0.733	0.625	4e-49
388504680	207	unknown [Lotus japonicus]	0.916	0.743	0.573	2e-48

>gi|224065132|ref|XP_002301684.1| predicted protein [Populus trichocarpa] gi|222843410|gb|EEE80957.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 111/185 (60%), Positives = 127/185 (68%), Gaps = 28/185 (15%)

Query: 11  VSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISS 70
            +LV+ ENVV +LVSRTGRHLQRY KGRRQVVGCIPYRYK    +    E++LEVLVISS
Sbjct: 3   TALVSQENVVASLVSRTGRHLQRYDKGRRQVVGCIPYRYKNGSSNTSEVEDELEVLVISS 62

Query: 71  QKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAE----------------- 113
           QKGKGMLFPKGGWE+DE+I++AA RET EEAGV G VE QL                   
Sbjct: 63  QKGKGMLFPKGGWELDETIKQAASRETYEEAGVKGNVEHQLGHWTFQSRTHGTDYDGYLF 122

Query: 114 ----------WPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVG 163
                     WPEKN R RKWMSV EAR+ CQ WWMKEALD LV RL  +Q  G+E+ +G
Sbjct: 123 PLHVKEVLDFWPEKNNRQRKWMSVEEARECCQRWWMKEALDVLVDRLAGRQQLGEEE-MG 181

Query: 164 TCSLS 168
           +CSLS
Sbjct: 182 SCSLS 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460851|ref|XP_003600707.1| Nudix hydrolase [Medicago truncatula] gi|355489755|gb|AES70958.1| Nudix hydrolase [Medicago truncatula] gi|388507980|gb|AFK42056.1| unknown [Medicago truncatula]

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/181 (62%), Positives = 132/181 (72%), Gaps = 31/181 (17%)

Query: 10  IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKC-VKQSLDINEEDLEVLVI 68
           +V+LV+ ENVV  LVSRTGR LQRY+KGRRQVVGCIPYRYK   K SLD+++E LEVLVI
Sbjct: 1   MVALVSQENVV-TLVSRTGRELQRYRKGRRQVVGCIPYRYKIGEKNSLDVSDE-LEVLVI 58

Query: 69  SSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAE--------------- 113
           SSQKGKGMLFPKGGWE+DES +EAALRET+EEAGV GIVE +L +               
Sbjct: 59  SSQKGKGMLFPKGGWELDESQKEAALRETMEEAGVRGIVEGKLGKWSFKSKTYDTLYDGY 118

Query: 114 ------------WPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDS 161
                       WPE+N+R R+WMS++EAR VCQHWWMKEALDRLV RL  Q+L G E  
Sbjct: 119 MFPLLVQEELEFWPEQNLRQRRWMSISEARDVCQHWWMKEALDRLVNRLLGQKL-GSEKQ 177

Query: 162 V 162
           V
Sbjct: 178 V 178

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075388|gb|ACJ86054.1| unknown [Medicago truncatula]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 114/181 (62%), Positives = 132/181 (72%), Gaps = 31/181 (17%)

Query: 10  IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKC-VKQSLDINEEDLEVLVI 68
           +V+LV+ ENVV  LVSRTGR LQRY+KGRRQVVGCIPYRYK   K SLD+++E LEVLVI
Sbjct: 1   MVALVSQENVV-TLVSRTGRELQRYRKGRRQVVGCIPYRYKIGEKNSLDVSDE-LEVLVI 58

Query: 69  SSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAE--------------- 113
           SSQKGKGMLFPKGGWE+DES +EAALRET+EEAGV GIVE +L +               
Sbjct: 59  SSQKGKGMLFPKGGWELDESQKEAALRETMEEAGVRGIVEGKLGKWSFKSKTYDTLYDGY 118

Query: 114 ------------WPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDS 161
                       WPE+N+R R+WMS++EAR VCQHWWMKEALDRLV RL  Q+L G E  
Sbjct: 119 MFPLLVQEELEFWPEQNLRQRRWMSISEARDVCQHWWMKEALDRLVNRLLRQKL-GSEKQ 177

Query: 162 V 162
           V
Sbjct: 178 V 178

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445094|ref|XP_004140308.1| PREDICTED: nudix hydrolase 18, mitochondrial-like [Cucumis sativus] gi|449529539|ref|XP_004171757.1| PREDICTED: nudix hydrolase 18, mitochondrial-like [Cucumis sativus]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 117/196 (59%), Positives = 130/196 (66%), Gaps = 39/196 (19%)

Query: 1   MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRYQ-KGRRQVVGCIPYRYKCVKQSLDIN 59
           MVALV+Q+ +VSLV          SRTGRHLQRY  +GRRQVVGCIPYRYK  K+S   N
Sbjct: 1   MVALVSQDNMVSLV----------SRTGRHLQRYDIRGRRQVVGCIPYRYKTTKKSTLDN 50

Query: 60  EEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE----------- 108
            E+LEVLVISSQKGKGMLFPKGGWE DESI EAA RET+EEAGV GIV+           
Sbjct: 51  IEELEVLVISSQKGKGMLFPKGGWETDESITEAASRETLEEAGVRGIVQGELGSWSFKSK 110

Query: 109 ----------------DQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTS 152
                           +QL  WPEKN R R WMS  EAR+VCQHWWMKEALD LV RL+S
Sbjct: 111 TYDTFYEGYMFPLLVKEQLEFWPEKNFRQRVWMSAHEAREVCQHWWMKEALDILVGRLSS 170

Query: 153 QQLHGKEDSVGTCSLS 168
           Q+    E+ V  CSLS
Sbjct: 171 QKKQQMEE-VMPCSLS 185

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580361|ref|XP_002531008.1| diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis] gi|223529406|gb|EEF31368.1| diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 114/182 (62%), Positives = 127/182 (69%), Gaps = 37/182 (20%)

Query: 1   MVALVAQETIVSLVTPENVVGNLVSRTGRHLQRYQKG-RRQVVGCIPYRYKCVKQSLDIN 59
           MVALV+QET+       NV   LVSRTGRHLQRY KG RRQVVGCIPYRYK  +Q+    
Sbjct: 1   MVALVSQETV-------NVA--LVSRTGRHLQRYSKGGRRQVVGCIPYRYKTGEQNYKEI 51

Query: 60  EEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE----------- 108
              LEVLVISSQKGKG+LFPKGGWE+DE+I+EAA RET+EEAGV GIVE           
Sbjct: 52  GGGLEVLVISSQKGKGLLFPKGGWELDETIKEAASRETLEEAGVRGIVECELGKWSFKSK 111

Query: 109 ----------------DQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTS 152
                           +QL  WPEKNVR RKWMSVA+AR+ CQHWWMKEALDRLV RL+S
Sbjct: 112 THDTFYEGYMFPLLVQEQLEFWPEKNVRERKWMSVADARECCQHWWMKEALDRLVNRLSS 171

Query: 153 QQ 154
           QQ
Sbjct: 172 QQ 173

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488225|ref|XP_002263589.2| PREDICTED: nudix hydrolase 18, mitochondrial-like [Vitis vinifera] gi|296087091|emb|CBI33465.3| unnamed protein product [Vitis vinifera]

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 110/174 (63%), Positives = 120/174 (68%), Gaps = 30/174 (17%)

Query: 23  LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGG 82
           LVSRTGRHLQRY KGRRQVVGCIPYRY+   Q    + E LEVL+ISSQKGK MLFPKGG
Sbjct: 4   LVSRTGRHLQRYNKGRRQVVGCIPYRYRITNQGSLEDGEALEVLLISSQKGKSMLFPKGG 63

Query: 83  WEIDESIQEAALRETIEEAGVTGIVEDQLAE---------------------------WP 115
           WE DES  EAALRET+EEAGVTGIVE +L +                           WP
Sbjct: 64  WETDESKTEAALRETVEEAGVTGIVERELGKWSFKSKRNDTYCEAFMFPLLVKEELELWP 123

Query: 116 EKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKED-SVGTCSLS 168
           EKNVR RKW+SVAEAR+VCQHWWMKEALDR V RLT   L  +ED  +G CSLS
Sbjct: 124 EKNVRERKWVSVAEAREVCQHWWMKEALDRFVRRLTF--LQQEEDLGLGPCSLS 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079516|ref|XP_002305883.1| predicted protein [Populus trichocarpa] gi|222848847|gb|EEE86394.1| predicted protein [Populus trichocarpa]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 109/185 (58%), Positives = 123/185 (66%), Gaps = 33/185 (17%)

Query: 11  VSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISS 70
            ++V+ ENVV +LVSRTGRHLQRY KGRRQVVGCIPYRY   K      E+  +VLVISS
Sbjct: 3   AAVVSQENVVASLVSRTGRHLQRYNKGRRQVVGCIPYRYTKGK-----GEDGFQVLVISS 57

Query: 71  QKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAE----------------- 113
           QKGKGMLFPKGGWE DE+I++ A+RET EEAGV G++E QL E                 
Sbjct: 58  QKGKGMLFPKGGWESDETIKQGAVRETYEEAGVKGVLEPQLGEWTFQSRTHGTDYEGYMF 117

Query: 114 ----------WPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSVG 163
                     WPEK  R RKWMSV EAR+ CQHWWMKEALD LV RL  QQ    ED VG
Sbjct: 118 PLRVKEELDFWPEKTNRLRKWMSVTEARECCQHWWMKEALDVLVDRLAGQQ-QLDEDEVG 176

Query: 164 TCSLS 168
           +CSLS
Sbjct: 177 SCSLS 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726568|ref|NP_001236875.1| uncharacterized protein LOC100500105 [Glycine max] gi|255629193|gb|ACU14941.1| unknown [Glycine max]

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 108/176 (61%), Positives = 126/176 (71%), Gaps = 29/176 (16%)

Query: 10  IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKC-VKQSLDINEEDLEVLVI 68
           +V++V+ ENV   LVSRTGR LQRY+KGRRQVVGCIPYR+K   K SLD+  ++LEVLVI
Sbjct: 1   MVAVVSQENVAA-LVSRTGRELQRYRKGRRQVVGCIPYRFKIGEKTSLDVVSDELEVLVI 59

Query: 69  SSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI---------------------- 106
           SSQKGKGMLFPKGGWE+DES +EAALRET+EEAGV GI                      
Sbjct: 60  SSQKGKGMLFPKGGWELDESKKEAALRETMEEAGVRGIVGGKLGKWSFKSKTHDTFYEGY 119

Query: 107 -----VEDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHG 157
                V++QL  WPE+NVR R WMSV EAR+VCQHWWMKEALDRLV R + Q+  G
Sbjct: 120 MFPLLVQEQLEFWPEQNVRQRIWMSVTEAREVCQHWWMKEALDRLVNRPSGQKQLG 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569788|ref|XP_003553078.1| PREDICTED: nudix hydrolase 17, mitochondrial-like [Glycine max]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 110/176 (62%), Positives = 128/176 (72%), Gaps = 30/176 (17%)

Query: 10  IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKC-VKQSLDINEEDLEVLVI 68
           +V++V+ ENVV  LVSRTGR LQRY+KGRRQVVGCIPYR+K   K  LD+++E LEVLVI
Sbjct: 1   MVAVVSQENVVA-LVSRTGRELQRYRKGRRQVVGCIPYRFKIGEKTCLDVSDE-LEVLVI 58

Query: 69  SSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI---------------------- 106
           SSQKGKGMLFPKGGWE+DES +EAALRET+EEAGV GI                      
Sbjct: 59  SSQKGKGMLFPKGGWELDESKKEAALRETMEEAGVRGIVGGKLGKWSFKSKTHDTFYEGY 118

Query: 107 -----VEDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHG 157
                V++QL  WPE+NVR R WMSV EAR+VCQHWWMKEALDRLV RL+ Q+  G
Sbjct: 119 MFPLLVQEQLEFWPEQNVRQRIWMSVTEAREVCQHWWMKEALDRLVNRLSGQKQLG 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504680|gb|AFK40406.1| unknown [Lotus japonicus]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 105/183 (57%), Positives = 129/183 (70%), Gaps = 29/183 (15%)

Query: 10  IVSLVTPENVVGNLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVIS 69
           +V+L++ EN +  LVSRTGR LQRY++GRRQVVGCIPYR+K  +++   +  +LEVLVIS
Sbjct: 1   MVALISQENAIA-LVSRTGRELQRYREGRRQVVGCIPYRFKVGEKASLNDSGELEVLVIS 59

Query: 70  SQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI----------------------- 106
           SQKGKG+LFPKGGWE+DES +EAALRET+EEAGV GI                       
Sbjct: 60  SQKGKGLLFPKGGWELDESQKEAALRETLEEAGVRGIVGGRLGKWSFKSKTHDALYEGYM 119

Query: 107 ----VEDQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLHGKEDSV 162
               V++QL  WPE+N+R R WMSV EAR+VCQHWWMKEALDRLV RLT Q+L G E  +
Sbjct: 120 FPLLVQEQLEFWPEQNLRQRIWMSVTEAREVCQHWWMKEALDRLVNRLTGQKL-GLEKQI 178

Query: 163 GTC 165
             C
Sbjct: 179 HLC 181

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2065440	182	NUDT17 "nudix hydrolase homolo	0.535	0.494	0.652	7.6e-44
TAIR|locus:2006817	176	NUDT18 "nudix hydrolase homolo	0.535	0.511	0.673	2.8e-42
TAIR|locus:2014164	207	NUDT4 "nudix hydrolase homolog	0.601	0.487	0.641	6.2e-30
TAIR|locus:2206835	198	NUDT21 "nudix hydrolase homolo	0.654	0.555	0.610	2.1e-29
TAIR|locus:2091275	180	NUDT16 "nudix hydrolase homolo	0.565	0.527	0.54	4.3e-22
TAIR|locus:2090842	202	NUDX13 "nudix hydrolase homolo	0.565	0.470	0.515	2.8e-18
TAIR|locus:2010331	203	NUDT12 "nudix hydrolase homolo	0.547	0.453	0.494	5.3e-17
CGD|CAL0000145	192	orf19.4229 [Candida albicans (	0.505	0.442	0.414	2.2e-15
ASPGD|ASPL0000000420	159	ndxD [Emericella nidulans (tax	0.434	0.459	0.430	1e-13
UNIPROTKB|G4MKT5	168	MGG_06680 "Nudix/MutT family p	0.613	0.613	0.370	1.7e-11

TAIR|locus:2065440 NUDT17 "nudix hydrolase homolog 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
 Identities = 60/92 (65%), Positives = 72/92 (78%)

Query:    23 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGG 82
             L SRTGR  QRY KGRRQVVGC+PYR+K       I++E +EVLVISSQKG  ++FPKGG
Sbjct:     9 LASRTGRQFQRYNKGRRQVVGCVPYRFKLSNDG-KISDE-VEVLVISSQKGHALMFPKGG 66

Query:    83 WEIDESIQEAALRETIEEAGVTGIVEDQLAEW 114
             WE+DES++EAA RE +EEAGV G VE QL +W
Sbjct:    67 WELDESVEEAASRECLEEAGVLGNVEHQLGKW 98

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

TAIR|locus:2006817 NUDT18 "nudix hydrolase homolog 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
 Identities = 62/92 (67%), Positives = 73/92 (79%)

Query:    23 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGG 82
             LVSRTGR  QRY KGRRQVVGCIPYR K +     I++E  EVLVISSQKG  ++FPKGG
Sbjct:     4 LVSRTGRQSQRYNKGRRQVVGCIPYRLK-ISSDGTISDE-FEVLVISSQKGHALMFPKGG 61

Query:    83 WEIDESIQEAALRETIEEAGVTGIVEDQLAEW 114
             WE+DES++EAA RE++EEAGV G VE QL +W
Sbjct:    62 WELDESVEEAASRESLEEAGVVGNVERQLGKW 93

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

TAIR|locus:2014164 NUDT4 "nudix hydrolase homolog 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 68/106 (64%), Positives = 86/106 (81%)

Query:    17 ENVVGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLD-INEEDLEVLVISSQKGK 74
             E VV +LVSRTGR LQRY   G RQVVGC+PYRYK  KQ ++ +  + ++VL++S+QKGK
Sbjct:    38 EKVV-SLVSRTGRDLQRYDHAGYRQVVGCVPYRYK--KQEVNGVETQVIQVLLVSAQKGK 94

Query:    75 GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPEKNVR 120
             GMLFPKGGWE DES++EAALRETIEEAGVTG +E++L +W  K+ R
Sbjct:    95 GMLFPKGGWETDESMEEAALRETIEEAGVTGELEEKLGKWQYKSKR 140

GO:0009507 "chloroplast" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2206835 NUDT21 "nudix hydrolase homolog 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 72/118 (61%), Positives = 86/118 (72%)

Query:     5 VAQETIVSLVTPENVVGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDL 63
             +  + IV + TP   V +LVSRTGR LQRY   G RQVVGC+PYRYK  K        ++
Sbjct:    26 IPSKKIVPVPTPSEKVVSLVSRTGRDLQRYNTAGYRQVVGCVPYRYK--KHG----GGEI 79

Query:    64 EVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPEKNVR 120
             EVL+IS+QK GKGML PKGGWEIDESI+EAALRETIEEAGVTG +E+ L +W  K+ R
Sbjct:    80 EVLLISAQKKGKGMLLPKGGWEIDESIEEAALRETIEEAGVTGQLEESLGKWQYKSKR 137

GO:0009507 "chloroplast" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2091275 NUDT16 "nudix hydrolase homolog 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 54/100 (54%), Positives = 69/100 (69%)

Query:    22 NLVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED---LEVLVISSQKGKGMLF 78
             +LV+RTGR  QRY+ G R V GCIP+RY  V    D N E    ++VL+ISS  G G+LF
Sbjct:     3 DLVARTGRLQQRYEDGSRLVAGCIPFRY--VNSDKDGNSESGKVIQVLMISSSSGPGLLF 60

Query:    79 PKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPEKN 118
             PKGGWE DE+++EAA RE +EEAGV GI+ D L  +  K+
Sbjct:    61 PKGGWENDETVREAAAREAVEEAGVRGILMDFLGNYEFKS 100

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

TAIR|locus:2090842 NUDX13 "nudix hydrolase homolog 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 51/99 (51%), Positives = 65/99 (65%)

Query:    20 VGNLVSRTGRHLQRYQKGRRQVVGCIPYRY-KCVKQ-SLDIN-EEDLEVLVISSQKGKGM 76
             + NL +RTGR  QRY    R V GCIPYR  K  ++ S  ++ E  L+VL+ISS     +
Sbjct:     1 MSNLSARTGRDHQRYDNNFRLVSGCIPYRLVKDEEEDSTSVDFENKLQVLMISSPNRHDL 60

Query:    77 LFPKGGWEIDESIQEAALRETIEEAGVTGIV-EDQLAEW 114
             +FPKGGWE DE++ EAA RE +EEAGV GI+ ED L  W
Sbjct:    61 VFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVW 99

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA;ISS;IDA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IDA

TAIR|locus:2010331 NUDT12 "nudix hydrolase homolog 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 48/97 (49%), Positives = 60/97 (61%)

Query:    23 LVSRTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEED----LEVLVISSQKGKGMLF 78
             L SRTGR  QRY    R V GCIPYR     ++ + +  D    LEVL++SS     ++F
Sbjct:     4 LSSRTGRDRQRYDNNFRLVSGCIPYRLMKADETEEDSGVDFVNKLEVLMVSSPNRHDLVF 63

Query:    79 PKGGWEIDESIQEAALRETIEEAGVTGIVED-QLAEW 114
             PKGGWE DE++ EAA RE IEEAGV GI+ +  L  W
Sbjct:    64 PKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVW 100

GO:0005739 "mitochondrion" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

CGD|CAL0000145 orf19.4229 [Candida albicans (taxid:5476)]

 Score = 145 (56.1 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
 Identities = 41/99 (41%), Positives = 57/99 (57%)

Query:    16 PENVVGNLVSRTGRHLQRY--QKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG 73
             P   V +  +R GR  QRY  + G R V GC+     C+ ++ D      ++++ISS K 
Sbjct:    10 PNLPVKSQTAREGRENQRYNSETGARIVAGCM-----CLNETKD------KIIMISSSKH 58

Query:    74 KGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL 111
             K   + PKGG E+DES  E A+RET EEAGV GI+  +L
Sbjct:    59 KNRWIVPKGGNELDESELETAVRETWEEAGVEGIIIKKL 97

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008486 "diphosphoinositol-polyphosphate diphosphatase activity" evidence=IEA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IEA

GO:0000298 "endopolyphosphatase activity" evidence=IEA

GO:0034431 "bis(5'-adenosyl)-hexaphosphatase activity" evidence=IEA

GO:0046855 "inositol phosphate dephosphorylation" evidence=IEA

GO:0015961 "diadenosine polyphosphate catabolic process" evidence=IEA

GO:0006798 "polyphosphate catabolic process" evidence=IEA

ASPGD|ASPL0000000420 ndxD [Emericella nidulans (taxid:162425)]

 Score = 136 (52.9 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
 Identities = 37/86 (43%), Positives = 49/86 (56%)

Query:    20 VGNLVSRTGRHLQRY-QKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLF 78
             V ++ SR GR  QRY  KG R V G +P             ++ L +++ S+ +G G + 
Sbjct:     5 VRSMESRVGRKNQRYGSKGERLVAGVVPLS----------KDKSLVMMIQSAGRG-GWVL 53

Query:    79 PKGGWEIDE-SIQEAALRETIEEAGV 103
             PKGGWE DE S Q+AA RE  EEAGV
Sbjct:    54 PKGGWETDEASAQQAACREAWEEAGV 79

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IEA

GO:0008486 "diphosphoinositol-polyphosphate diphosphatase activity" evidence=IEA

GO:0000298 "endopolyphosphatase activity" evidence=IEA

GO:0034431 "bis(5'-adenosyl)-hexaphosphatase activity" evidence=IEA

GO:0015961 "diadenosine polyphosphate catabolic process" evidence=IEA

GO:0046855 "inositol phosphate dephosphorylation" evidence=IEA

GO:0006798 "polyphosphate catabolic process" evidence=IEA

UNIPROTKB|G4MKT5 MGG_06680 "Nudix/MutT family protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 43/116 (37%), Positives = 58/116 (50%)

Query:    25 SRTGRHLQRYQ-KGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGW 83
             SRTGR  QRY  KG R V G +            ++E+   VL+  S + KG + PKGGW
Sbjct:    16 SRTGRSKQRYNSKGERLVAGVVA-----------LSEDKEYVLLTQSTRRKGWVLPKGGW 64

Query:    84 EIDESIQEAALRETIEEAGVTGIVEDQLAEWPEKNVR-SRKWMSVAEARKVCQHWW 138
             E DE   EAA RE  EEAG+   ++  L +  E  V+ S K     +  K   H++
Sbjct:    65 ETDEECTEAAEREAWEEAGIVVTIDYDLGQIEETRVKTSSKSAKSGKREKAIYHFY 120

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZU95	NUD17_ARATH	3, ., 6, ., 1, ., -	0.5116	0.8511	0.7857	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.766
3rd Layer	3.6.1.13	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_II2208 hypothetical protein (193 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
cd04666	122	cd04666, Nudix_Hydrolase_9, Members of the Nudix h	5e-29
pfam00293	133	pfam00293, NUDIX, NUDIX domain	5e-10
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	3e-07
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	2e-06
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	1e-05
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	1e-05
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	1e-04
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	1e-04
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	2e-04
cd04665	118	cd04665, Nudix_Hydrolase_8, Members of the Nudix h	2e-04
cd03675	134	cd03675, Nudix_Hydrolase_2, Contains a crystal str	7e-04
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	8e-04
cd04511	130	cd04511, Nudix_Hydrolase_4, Members of the Nudix h	0.003
cd04672	123	cd04672, Nudix_Hydrolase_14, Members of the Nudix	0.003
cd03427	137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	0.003
cd03672	145	cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), t	0.004
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	0.004

>gnl|CDD|240024 cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score =  103 bits (258), Expect = 5e-29
 Identities = 42/131 (32%), Positives = 56/131 (42%), Gaps = 39/131 (29%)

Query: 40  QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIE 99
              G IPYR             ++EVL+++S++    + PKGG E DES  EAA RE  E
Sbjct: 1   LQAGAIPYR---------ETGGEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWE 51

Query: 100 EAGVTG------------------------------IVEDQLAEWPEKNVRSRKWMSVAE 129
           EAGV G                               V ++L EWPE + R RKW S  E
Sbjct: 52  EAGVRGKIGKRPLGRFEYRKRSKNRPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEE 111

Query: 130 ARKVCQHWWMK 140
           A  + +   +K
Sbjct: 112 AALLVEEPELK 122

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 54.0 bits (130), Expect = 5e-10
 Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 45/145 (31%)

Query: 38  RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGML----FPKGGWEIDESIQEAA 93
           RR+ VG +               ED EVL++   +          P G  E  ES +EAA
Sbjct: 1   RRRAVGVVLLN------------EDGEVLLVRRSRPPVFPGLWELPGGKVEPGESPEEAA 48

Query: 94  LRETIEEAGVTGIVEDQL-----------------------------AEWPEKNVRSRKW 124
           +RE  EE G+  ++   L                              +  E  V   +W
Sbjct: 49  VRELEEETGLRVLLLLLLGVLEYPAPGRDGGEHVHVFLAELLGGEPEPQPNEDEVSEVRW 108

Query: 125 MSVAEARKVCQHWWMKEALDRLVMR 149
           + + E  ++     ++E +  L+  
Sbjct: 109 VPLEELLELLLAGEIREVIALLLAL 133

Length = 133

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 61  EDLEVLVISSQKGKGML--FPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEW 114
           ED  VL++      G L   P GG E  E+++EAA+RE  EE G+   V   L  +
Sbjct: 10  EDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVY 65

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 56  LDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWP 115
              ++  +EVL+I   +G     PKG  E  E+  EAA+RE  EE G+   V D L    
Sbjct: 9   FRGSDGGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGT-- 66

Query: 116 EKNVRSRKWMSVAEARKVCQ-HWWMKEALD 144
                 R W S +  R     HWW+  AL 
Sbjct: 67  -----IRYWFSSSGKRVHKTVHWWLMRALG 91

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 43  GCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG 102
           G I YR             ++E L++ +  G    FPKG  E  E   EAALRET EE G
Sbjct: 6   GAIIYRRLN---------NEIEYLLLQASYG-HWDFPKGHVEPGEDDLEAALRETEEETG 55

Query: 103 VT 104
           +T
Sbjct: 56  IT 57

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 48  RYKCVKQSLDINEEDLEVLVISSQKGKGML-FPKGGWEIDESIQ-EAALRETIEEAGVTG 105
                   L   +   EVL+   +   G+   P G  E  E +  EAA RE  EE G+  
Sbjct: 9   VRDVAVAVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRV 68

Query: 106 IVED 109
             E 
Sbjct: 69  KDER 72

Length = 161

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 58  INEEDLEVLVI--SSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA 112
           +   +  +L++  +++ G G    P G  EI E+++EAA RE  EE G+   V + LA
Sbjct: 16  LIVRNGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLA 73

Length = 145

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 78  FPKGGWEIDESIQEAALRETIEEAGVTG 105
            P G  +  E  +EAA RE  EE G   
Sbjct: 33  LPAGLIDPGEDPEEAARRELEEETGYEA 60

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 55  SLDINEEDLEVLVISSQKGKGM--LFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA 112
           S+ I  +  E+L+I   K      +FP GG E  E+ +EAA RE +EE G+   VE+   
Sbjct: 4   SIVIINDQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFL 63

Query: 113 E 113
            
Sbjct: 64  I 64

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|240023 cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 66  LVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTG--------IVEDQLAEWPEK 117
           L++   K +G  FP G  E  E+I+EAA RE  EE G              D      E 
Sbjct: 13  LLLVRHKDRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFET 72

Query: 118 NV 119
            V
Sbjct: 73  LV 74

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|239647 cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 66  LVISSQKGKGMLF--PKGGWEIDESIQEAALRETIEEAG 102
           L++  +   G++F  P G  E  ES+ EAA+RET+EE G
Sbjct: 14  LLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETG 52

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 134

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 17/83 (20%)

Query: 78  FPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPE-------KNVRSRKWMSVAEA 130
           FP+GG +  E  ++AALRE  EE G+     + +AE P+         ++ + W      
Sbjct: 31  FPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELKLKIWGGRYRG 90

Query: 131 RKVCQHWWMKEALDRLVMRLTSQ 153
           ++  Q W         + R T  
Sbjct: 91  QE--QKW--------FLFRFTGD 103

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|239948 cd04511, Nudix_Hydrolase_4, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 16/77 (20%)

Query: 39  RQVVGCIPY---RYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALR 95
           + +VGC+P    +    +++            I  + G   L P G  E  E+ ++ ALR
Sbjct: 13  KIIVGCVPEWEGKVLLCRRA------------IEPRHGFWTL-PAGFMENGETTEQGALR 59

Query: 96  ETIEEAGVTGIVEDQLA 112
           ET EEAG    ++   A
Sbjct: 60  ETWEEAGARVEIDGLYA 76

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|240029 cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)

Query: 81  GGW-EIDESIQEAALRETIEEAGVTGIVE 108
           GGW ++  S  E  ++E  EE G+   V 
Sbjct: 30  GGWADVGLSPAENVVKEVKEETGLDVKVR 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 11/48 (22%)

Query: 64  EVLVISSQKGKGMLFPKGGW-------EIDESIQEAALRETIEEAGVT 104
           +VL+++ +KG G     GGW       E  E+ +E A+RE  EE G+T
Sbjct: 13  KVLLLNRKKGPGW----GGWNGPGGKVEPGETPEECAIRELKEETGLT 56

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases. Length = 137

>gnl|CDD|239644 cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 61  EDLE-VLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG 102
           EDL+ VL++   K K   FPKG    DE   + A+RE  EE G
Sbjct: 11  EDLDKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETG 53

Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). Length = 145

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 58  INEEDLEVLVISS-QKGKGML-FPKGGWEIDESIQEAALRETIEEAGV 103
           +NE++ EVLV+    K       P G  +  E I + A+RE +EE G+
Sbjct: 10  LNEKN-EVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGI 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	99.84
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.82
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.8
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.77
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.76
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.75
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.73
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.72
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.72
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.72
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.71
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.71
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.7
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.7
PLN02325	144	nudix hydrolase	99.69
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.69
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.69
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.68
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.68
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.68
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.68
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.68
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.68
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.67
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.67
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.67
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.67
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.67
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.67
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.66
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.66
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.66
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.66
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.65
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.65
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.65
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.64
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.64
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.64
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.63
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.62
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.62
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.62
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.62
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.61
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.6
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.58
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.56
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.56
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.55
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.54
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.53
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.53
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.52
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.51
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.5
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.49
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.49
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.49
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.47
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.45
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.44
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.44
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.42
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.42
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.41
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.41
PRK10707	190	putative NUDIX hydrolase; Provisional	99.4
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.4
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.39
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.37
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.34
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.33
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.32
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.32
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.28
PRK08999	312	hypothetical protein; Provisional	99.28
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	99.28
PLN02709	222	nudix hydrolase	99.27
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.24
PLN03143	291	nudix hydrolase; Provisional	99.07
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.03
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.02
PLN02791	770	Nudix hydrolase homolog	98.84
PLN02552	247	isopentenyl-diphosphate delta-isomerase	98.8
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	98.67
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	98.57
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.56
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	98.37
KOG4195	275	consensus Transient receptor potential-related cha	97.99
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	97.44
PLN02839	372	nudix hydrolase	97.42
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	97.12
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	96.73
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	96.48
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	94.84
COG4112	203	Predicted phosphoesterase (MutT family) [General f	93.89
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	91.27

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=99.84  E-value=1.7e-20  Score=141.29  Aligned_cols=111  Identities=51%  Similarity=0.929  Sum_probs=94.4

Q ss_pred             ccccC-CceeEEEEEEEEeeccccccccccCceEEEEEEEeC-CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec
Q 030947           32 QRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED  109 (168)
Q Consensus        32 ~r~~~-~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~  109 (168)
                      ++|+. ++|+.+|||||+.+   .      +..+|||+...+ +..|.+|+|++|++|+..+||.||..||+|+.+...+
T Consensus         1 qry~~~G~r~vagCi~~r~~---~------~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~   71 (145)
T KOG2839|consen    1 QRYDPAGFRLVAGCICYRSD---K------EKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGR   71 (145)
T ss_pred             CccCCCCcEEEEEeeeeeec---C------cceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeec
Confidence            47885 99999999999986   1      247999999987 6789999999999999999999999999999987666


Q ss_pred             ----------------------------cccccCCCc--eeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHh
Q 030947          110 ----------------------------QLAEWPEKN--VRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT  151 (168)
Q Consensus       110 ----------------------------~~~~~~e~e--~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~  151 (168)
                                                  .+..||+.+  .++++|++++|+.+...+..+..++..+...+.
T Consensus        72 ~~~g~~~~~~~~~~~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~~~~~m~~al~e~~~~l~  143 (145)
T KOG2839|consen   72 LLGGFEDFLSKKHRTKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIELCQHKWMKAALEEFLQFLC  143 (145)
T ss_pred             cccchhhccChhhcccccceeehhhhhhhcccChhhhcccceeEEeeHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence                                        234466665  889999999999999989999988888776643

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.82  E-value=1.3e-19  Score=132.62  Aligned_cols=100  Identities=31%  Similarity=0.413  Sum_probs=81.0

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-------  111 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-------  111 (168)
                      +..+++|+++.+   +      ++.+|||+++++.+.|.||||+++.||++.+||.||++||||+.+.....+       
T Consensus         1 ~~~a~~ii~~~~---~------~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~   71 (131)
T cd03673           1 VLAAGGVVFRGS---D------GGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWF   71 (131)
T ss_pred             CeeEEEEEEEcc---C------CCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEec
Confidence            357899999874   2      456999999988889999999999999999999999999999986543300       


Q ss_pred             -----------cc----------c--CCCceeeEEEEeHhHHHhhcCChhHHHHHHHHH
Q 030947          112 -----------AE----------W--PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV  147 (168)
Q Consensus       112 -----------~~----------~--~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~  147 (168)
                                 ..          .  ++.+..++.|++++++.+++.++..+.++..++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~  130 (131)
T cd03673          72 SSSGKRVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLSYPNDRELLRAAL  130 (131)
T ss_pred             cCCCCCcceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcCCHhHHHHHHHhh
Confidence                       00          0  234667899999999999999999988887764

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=4.1e-19  Score=131.27  Aligned_cols=91  Identities=44%  Similarity=0.658  Sum_probs=73.4

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCcccee-ccc-------
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE-DQL-------  111 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~-~~~-------  111 (168)
                      +++|+|+|+.+   +      +..+|||+++.+.+.|.||||+++.|||+.+||.||++||||+++... .++       
T Consensus         1 ~~~g~v~~~~~---~------~~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~   71 (122)
T cd04666           1 LQAGAIPYRET---G------GEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRK   71 (122)
T ss_pred             CEEEEEEEEEc---C------CceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeee
Confidence            37899999874   2      356899999887789999999999999999999999999999986544 311       


Q ss_pred             ----------------------cccCCCceeeEEEEeHhHHHhhcCChhH
Q 030947          112 ----------------------AEWPEKNVRSRKWMSVAEARKVCQHWWM  139 (168)
Q Consensus       112 ----------------------~~~~e~e~~~~~W~~~~e~~~~~~~~~~  139 (168)
                                            ..+++.+..+++|++++++.+++.++++
T Consensus        72 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~~~~~  121 (122)
T cd04666          72 RSKNRPPRCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAALLVEEPEL  121 (122)
T ss_pred             cCCCCCceEEEEEEEEEEeccccCCcccCceEEEEecHHHHHHhcCChhh
Confidence                                  0113335568999999999999988864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.77  E-value=3.7e-18  Score=125.50  Aligned_cols=98  Identities=31%  Similarity=0.359  Sum_probs=78.4

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------c
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-------A  112 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-------~  112 (168)
                      ..+|+|+|..+   +      ++.+|||+++++ +.|.+|||+++.|||+.+||.||++||||+.+.....+       .
T Consensus         3 ~~~g~vi~~~~---~------~~~~vLl~~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~   72 (130)
T cd03428           3 RSAGAIIYRRL---N------NEIEYLLLQASY-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLN   72 (130)
T ss_pred             eEEEEEEEEec---C------CCceEEEEEccC-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEE
Confidence            47899999875   2      456899999988 89999999999999999999999999999986433310       0


Q ss_pred             -----------cc-----------CCCceeeEEEEeHhHHHhhcCChhHHHHHHHHH
Q 030947          113 -----------EW-----------PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV  147 (168)
Q Consensus       113 -----------~~-----------~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~  147 (168)
                                 .|           ...+..++.|++++++.+++.++.++.+++++.
T Consensus        73 ~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~  129 (130)
T cd03428          73 YQVRGKLKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEALKLLTYEDLKAVLDKAH  129 (130)
T ss_pred             ccccCcceEEEEEEEEeCCCCccccccceeeEEeecHHHHHHHcCchhHHHHHHHhh
Confidence                       00           113677899999999999998998888887653

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=6.1e-18  Score=125.48  Aligned_cols=99  Identities=25%  Similarity=0.224  Sum_probs=77.8

Q ss_pred             EEEEEEEeeccccccccccCceEEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec------c---
Q 030947           42 VGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED------Q---  110 (168)
Q Consensus        42 ~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~------~---  110 (168)
                      +|+|++...   +      ++.+|||++|..  .|.|.+|||+++.|||+.+||.||++||||+++....      .   
T Consensus         2 ~~~v~~~~~---~------~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~   72 (131)
T cd04695           2 VSGVLLRSL---D------KETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYE   72 (131)
T ss_pred             ceEEEEEEc---C------CCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEee
Confidence            577777664   2      456899999987  7899999999999999999999999999999864221      0   


Q ss_pred             --------cc-----------ccCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHH
Q 030947          111 --------LA-----------EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMR  149 (168)
Q Consensus       111 --------~~-----------~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~  149 (168)
                              ..           ..++.+..+++|++++++.++...+..+.++..+...
T Consensus        73 ~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~~~~  130 (131)
T cd04695          73 ANDNRILMAPVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELAPFPGQRALYDHVWRY  130 (131)
T ss_pred             cCCceEEEEEEEEEEecCCCccccCchhcccEecCHHHHHHhcCChhHHHHHHHHHhh
Confidence                    00           0023367789999999999999999998888776543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.75  E-value=1.4e-17  Score=125.84  Aligned_cols=101  Identities=25%  Similarity=0.303  Sum_probs=78.3

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeC-CCceeccceeccCCCCHHHHHHHHHHHHHcCcc--ceecc----
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTG--IVEDQ----  110 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~--~~~~~----  110 (168)
                      .+..+++++++.+            ++|||+++.. ++.|.+|||+++.|||+.+||+||++||||+++  .....    
T Consensus         6 ~~~~v~~vi~~~~------------~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~   73 (148)
T PRK09438          6 RPVSVLVVIYTPD------------LGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQ   73 (148)
T ss_pred             CceEEEEEEEeCC------------CeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccc
Confidence            4567888888643            2799998865 578999999999999999999999999999987  21100    


Q ss_pred             ----------------------c-ccc----------CCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHH
Q 030947          111 ----------------------L-AEW----------PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL  150 (168)
Q Consensus       111 ----------------------~-~~~----------~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~  150 (168)
                                            . ..|          ...|..++.|++++++.++...+.++.+++.+..++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~  146 (148)
T PRK09438         74 RSIEYEIFPHWRHRYAPGVTRNTEHWFCLALPHERPVVLTEHLAYQWLDAREAAALTKSWSNAEAIEQLVIRL  146 (148)
T ss_pred             cccccccchhhhhccccccCCceeEEEEEecCCCCccccCcccceeeCCHHHHHHHhcChhHHHHHHHHHHHh
Confidence                                  0 000          112667899999999999999999999998877654

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.73  E-value=5e-17  Score=123.54  Aligned_cols=86  Identities=24%  Similarity=0.305  Sum_probs=66.5

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceec----------
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED----------  109 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~----------  109 (168)
                      ..+|+|+++.+           +.+|||+++...+.|.||||+++.|||+.+||.||++||||+.+....          
T Consensus         2 p~~gaii~~~~-----------~~~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~~~~~~~~   70 (145)
T cd03672           2 PVYGAIILNED-----------LDKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKDDYIELII   70 (145)
T ss_pred             CeeEEEEEeCC-----------CCEEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccccceeeeccc
Confidence            36788888742           248999999877899999999999999999999999999999865311          


Q ss_pred             --------ccccc---------CCCceeeEEEEeHhHHHhhcCC
Q 030947          110 --------QLAEW---------PEKNVRSRKWMSVAEARKVCQH  136 (168)
Q Consensus       110 --------~~~~~---------~e~e~~~~~W~~~~e~~~~~~~  136 (168)
                              .....         +..|..+++||++++++++...
T Consensus        71 ~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~  114 (145)
T cd03672          71 RGQNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNK  114 (145)
T ss_pred             CCcEEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhh
Confidence                    00000         1236778999999999997643

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.72  E-value=4e-17  Score=119.00  Aligned_cols=80  Identities=29%  Similarity=0.381  Sum_probs=63.5

Q ss_pred             EEEEEEEeCC---CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--------------------c--------
Q 030947           64 EVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--------------------A--------  112 (168)
Q Consensus        64 ~vLLv~r~~~---~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--------------------~--------  112 (168)
                      +|||+++++.   +.|.+|||+++.||++.+||.||++||||+++.....+                    .        
T Consensus        12 ~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~   91 (128)
T cd04684          12 KLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDAHHLCVFYDARVVG   91 (128)
T ss_pred             EEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeeccEEEEEEEEEEec
Confidence            8999999874   89999999999999999999999999999986433200                    0        


Q ss_pred             -----ccCCCceeeEEEEeHhHHHhhcCChhHHHHH
Q 030947          113 -----EWPEKNVRSRKWMSVAEARKVCQHWWMKEAL  143 (168)
Q Consensus       113 -----~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l  143 (168)
                           ..+..+..++.|++++++......+....++
T Consensus        92 ~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~a~  127 (128)
T cd04684          92 GALPVQEPGEDSHGAAWLPLDEAIERLLSPLVLWAV  127 (128)
T ss_pred             CccccCCCCCCceeeEEECHHHhhccCCCHHHHHhh
Confidence                 0112355789999999999888888766554

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=6.6e-17  Score=121.12  Aligned_cols=97  Identities=22%  Similarity=0.213  Sum_probs=73.8

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceec---------
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED---------  109 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~---------  109 (168)
                      +..+++++++.           +..+|||+++++.+.|.+|||+++.||++.+||.||++||||+++....         
T Consensus         2 ~~~~~~~v~~~-----------~~~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~   70 (138)
T cd03674           2 HFTASAFVVNP-----------DRGKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLD   70 (138)
T ss_pred             cEEEEEEEEeC-----------CCCeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccce
Confidence            56788888864           2258999999888899999999999999999999999999999642110         


Q ss_pred             c----------------c--cc---------c--CCCceeeEEEEeHhHHHhhcCChhHHHHHHHH
Q 030947          110 Q----------------L--AE---------W--PEKNVRSRKWMSVAEARKVCQHWWMKEALDRL  146 (168)
Q Consensus       110 ~----------------~--~~---------~--~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~  146 (168)
                      .                +  .+         .  +..|..++.|++++++..+...+..+.++.++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~i~~~  136 (138)
T cd03674          71 VHPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASLELPEDVRRLVEKA  136 (138)
T ss_pred             eEeecCCCCCCCCCcEEEEEEEEEEccCccccCCCCCcccccEEEcHHHhhhccCCHHHHHHHHHH
Confidence            0                0  00         0  22356679999999998776677777777654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.72  E-value=6.6e-17  Score=117.94  Aligned_cols=97  Identities=27%  Similarity=0.347  Sum_probs=76.4

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeCC-----CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-  111 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~-----~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-  111 (168)
                      +|..+++++++.+          +  +|||+++.+.     +.|.+|||+++.||++.+||+||+.||||++....... 
T Consensus         1 ~~~~v~~ii~~~~----------~--~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~   68 (134)
T PF00293_consen    1 WRRAVGVIIFNED----------G--KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLG   68 (134)
T ss_dssp             EEEEEEEEEEETT----------T--EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEE
T ss_pred             CCCEEEEEEEeCC----------c--EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccce
Confidence            3678999999853          2  8999999865     68999999999999999999999999999986333200 


Q ss_pred             -----------------------------cccCCCceeeEEEEeHhHHHhhcCChhHHHHHHHH
Q 030947          112 -----------------------------AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRL  146 (168)
Q Consensus       112 -----------------------------~~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~  146 (168)
                                                   ......+...+.|++++++.++..+.....++..+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~i~~~  132 (134)
T PF00293_consen   69 LFSYPSPSGDPEGEIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGRIRKIIPWL  132 (134)
T ss_dssp             EEEEEETTTESSEEEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTHHHHHHHHH
T ss_pred             eeeecccCCCcccEEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcchhhhhccc
Confidence                                         00122277889999999999998888776666554

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=5.7e-17  Score=118.81  Aligned_cols=85  Identities=18%  Similarity=0.248  Sum_probs=65.4

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc---
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA---  112 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~---  112 (168)
                      |+.+++++++.+            .+|||+++.+   .+.|.+|||+++.|||+.+||.||++||||+++.....+.   
T Consensus         2 ~~~~~~~i~~~~------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~   69 (125)
T cd04679           2 RVGCGAAILRDD------------GKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVD   69 (125)
T ss_pred             ceEEEEEEECCC------------CEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEe
Confidence            677888888742            3899999864   4789999999999999999999999999999865433100   


Q ss_pred             -------------cc------------CCCceeeEEEEeHhHHHhhcC
Q 030947          113 -------------EW------------PEKNVRSRKWMSVAEARKVCQ  135 (168)
Q Consensus       113 -------------~~------------~e~e~~~~~W~~~~e~~~~~~  135 (168)
                                   .|            ...+..+++||+++++++.+.
T Consensus        70 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~  117 (125)
T cd04679          70 HIIEEPPQHWVAPVYLAENFSGEPRLMEPDKLLELGWFALDALPQPLT  117 (125)
T ss_pred             ecccCCCCeEEEEEEEEeecCCccccCCCccccEEEEeCHHHCCchhH
Confidence                         00            122567899999999987544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=6.4e-17  Score=116.99  Aligned_cols=75  Identities=27%  Similarity=0.386  Sum_probs=60.4

Q ss_pred             eEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccc-eeccc------------------------c-ccCC
Q 030947           63 LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI-VEDQL------------------------A-EWPE  116 (168)
Q Consensus        63 ~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~-~~~~~------------------------~-~~~e  116 (168)
                      +++||++++..+.|.+|||+++.|||+.+||.||++||||+.+. ....+                        . ..++
T Consensus        12 ~~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~   91 (120)
T cd04680          12 GRVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWDHVIVFRARADTQPVIRPS   91 (120)
T ss_pred             CeEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCCceEEEEEEecccCCCccCCc
Confidence            38999999877799999999999999999999999999999887 44410                        0 1123


Q ss_pred             CceeeEEEEeHhHHHhhcCCh
Q 030947          117 KNVRSRKWMSVAEARKVCQHW  137 (168)
Q Consensus       117 ~e~~~~~W~~~~e~~~~~~~~  137 (168)
                      .|..+++||+++++++.+..+
T Consensus        92 ~E~~~~~w~~~~~l~~~~~~~  112 (120)
T cd04680          92 HEISEARFFPPDALPEPTTPA  112 (120)
T ss_pred             ccEEEEEEECHHHCcccCChH
Confidence            467789999999999865543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=1e-16  Score=117.77  Aligned_cols=89  Identities=25%  Similarity=0.327  Sum_probs=66.4

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc------
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------  111 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------  111 (168)
                      +.+++++++.+            .+|||++++.  .+.|.+|||+++.|||+.+||.||++||||+.+.....+      
T Consensus         3 ~~~~~~v~~~~------------~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~   70 (127)
T cd04670           3 VGVGGLVLNEK------------NEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAH   70 (127)
T ss_pred             eEEEEEEEcCC------------CeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecC
Confidence            46777777632            3899999887  689999999999999999999999999999987544300      


Q ss_pred             ---------------cc------cCCCceeeEEEEeHhHHHhhcCChhHH
Q 030947          112 ---------------AE------WPEKNVRSRKWMSVAEARKVCQHWWMK  140 (168)
Q Consensus       112 ---------------~~------~~e~e~~~~~W~~~~e~~~~~~~~~~~  140 (168)
                                     ..      .+..+..+++|++++++........+.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~~  120 (127)
T cd04670          71 PGAFGKSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSEVN  120 (127)
T ss_pred             CCCcCceeEEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcchhHHHHH
Confidence                           00      012255678999999997765444443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=1.2e-16  Score=117.32  Aligned_cols=91  Identities=22%  Similarity=0.214  Sum_probs=68.3

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeC-CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-------  111 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-------  111 (168)
                      +.+++++++.+            .+|||+++.. .+.|.+|||+++.|||+.+||.||++||||+++.....+       
T Consensus         3 ~~v~~~i~~~~------------~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~   70 (125)
T cd04696           3 VTVGALIYAPD------------GRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIF   70 (125)
T ss_pred             cEEEEEEECCC------------CCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEec
Confidence            46777777632            3799998754 589999999999999999999999999999976433200       


Q ss_pred             ------------c-c---------cCCCceeeEEEEeHhHHHhhcCChhHHHH
Q 030947          112 ------------A-E---------WPEKNVRSRKWMSVAEARKVCQHWWMKEA  142 (168)
Q Consensus       112 ------------~-~---------~~e~e~~~~~W~~~~e~~~~~~~~~~~~~  142 (168)
                                  . +         -+..+...++||+++++.++...+..++.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~  123 (125)
T cd04696          71 SEEFHKPAHFVLFDFFARTDGTEVTPNEEIVEWEWVTPEEALDYPLNSFTRLL  123 (125)
T ss_pred             cCCCCCccEEEEEEEEEEecCCcccCCcccceeEEECHHHHhcCCCCHHHHHH
Confidence                        0 0         02226678999999999998777655544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02325 nudix hydrolase

Probab=99.69  E-value=7.1e-17  Score=122.43  Aligned_cols=95  Identities=20%  Similarity=0.197  Sum_probs=67.6

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc-
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA-  112 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~-  112 (168)
                      ..++.+++++++.             .+|||++|.+   .+.|.+|||+++.|||+.+||.||++||||+++...+.+. 
T Consensus         7 ~p~~~v~~vi~~~-------------~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~   73 (144)
T PLN02325          7 IPRVAVVVFLLKG-------------NSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTV   73 (144)
T ss_pred             CCeEEEEEEEEcC-------------CEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEE
Confidence            3456677777653             2899999875   4789999999999999999999999999999875544100 


Q ss_pred             ------------------------cc---C----CCceeeEEEEeHhHHHhhcCChhHHHHHHH
Q 030947          113 ------------------------EW---P----EKNVRSRKWMSVAEARKVCQHWWMKEALDR  145 (168)
Q Consensus       113 ------------------------~~---~----e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~  145 (168)
                                              ..   +    ..+..+++||++++++..+.++ .+.++..
T Consensus        74 ~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~~~p-~~~~~~~  136 (144)
T PLN02325         74 TNNVFLEEPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPLFWP-LEKLVGS  136 (144)
T ss_pred             ecceeecCCCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChhhhHH-HHHHHHc
Confidence                                    00   0    0123568999999999855444 3344433

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.69  E-value=1.2e-16  Score=120.61  Aligned_cols=92  Identities=20%  Similarity=0.257  Sum_probs=70.6

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--  111 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--  111 (168)
                      .+...+++++++.+            .+|||++++.   .+.|.||||++++|||+.+||+||++||||+++.....+  
T Consensus        11 ~~~~av~~vv~~~~------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~   78 (142)
T cd04700          11 VEARAAGAVILNER------------NDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGT   78 (142)
T ss_pred             eeeeeEEEEEEeCC------------CcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEE
Confidence            35568888888743            2799998764   378999999999999999999999999999986544310  


Q ss_pred             -------------ccc------------CCCceeeEEEEeHhHHHhhcCChhHH
Q 030947          112 -------------AEW------------PEKNVRSRKWMSVAEARKVCQHWWMK  140 (168)
Q Consensus       112 -------------~~~------------~e~e~~~~~W~~~~e~~~~~~~~~~~  140 (168)
                                   ..|            ...|..+++||+++++.+++....+.
T Consensus        79 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~i~  132 (142)
T cd04700          79 YLGRFDDGVLVLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQGQLR  132 (142)
T ss_pred             EEEEcCCCcEEEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhcccccccc
Confidence                         000            12367789999999999998776554

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=1.4e-16  Score=115.36  Aligned_cols=76  Identities=25%  Similarity=0.382  Sum_probs=59.6

Q ss_pred             EEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc------c----------------------
Q 030947           64 EVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------A----------------------  112 (168)
Q Consensus        64 ~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------~----------------------  112 (168)
                      +|||+++.+   .+.|.+|||+++.||++.+||.||++||||+++.....+      .                      
T Consensus        12 ~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (122)
T cd04673          12 RVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEFHYVLIDFLCRYLG   91 (122)
T ss_pred             EEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccceEEEEEEEEEEeCC
Confidence            799999875   478999999999999999999999999999986433300      0                      


Q ss_pred             --ccCCCceeeEEEEeHhHHHhhcCChhH
Q 030947          113 --EWPEKNVRSRKWMSVAEARKVCQHWWM  139 (168)
Q Consensus       113 --~~~e~e~~~~~W~~~~e~~~~~~~~~~  139 (168)
                        ..+..|..++.|++++++.++...+.+
T Consensus        92 ~~~~~~~E~~~~~w~~~~el~~~~~~~~~  120 (122)
T cd04673          92 GEPVAGDDALDARWVPLDELAALSLTEST  120 (122)
T ss_pred             CcccCCcccceeEEECHHHHhhCcCCccc
Confidence              012336678999999999998766543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.68  E-value=1.6e-16  Score=117.91  Aligned_cols=84  Identities=25%  Similarity=0.208  Sum_probs=66.6

Q ss_pred             EEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc---------------------c----ccC
Q 030947           64 EVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL---------------------A----EWP  115 (168)
Q Consensus        64 ~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~---------------------~----~~~  115 (168)
                      +|||+++..   .+.|.+|||+++.||++.+||+||++||||+++.....+                     .    ...
T Consensus        13 ~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~   92 (137)
T cd03427          13 KVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVFVFLATEFEGEPL   92 (137)
T ss_pred             EEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEEEEEECCcccccC
Confidence            899999986   588999999999999999999999999999986543300                     0    001


Q ss_pred             -CCceeeEEEEeHhHHHhhcCChhHHHHHHHHH
Q 030947          116 -EKNVRSRKWMSVAEARKVCQHWWMKEALDRLV  147 (168)
Q Consensus       116 -e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~  147 (168)
                       ..+...++|+++++++.+...+..+..++.+.
T Consensus        93 ~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~  125 (137)
T cd03427          93 KESEEGILDWFDIDDLPLLPMWPGDREWLPLML  125 (137)
T ss_pred             CCCccccceEEcHhhcccccCCCCcHHHHHHHh
Confidence             33556789999999998877777777777665

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=2.8e-16  Score=115.74  Aligned_cols=93  Identities=27%  Similarity=0.243  Sum_probs=70.7

Q ss_pred             EEEEEEEEeeccccccccccCceEEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec---ccc---
Q 030947           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED---QLA---  112 (168)
Q Consensus        41 ~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~---~~~---  112 (168)
                      ++.+++++..          ++.+|||++|.+  ++.|.+|||+++.||++.+||.||++||||+.+....   ...   
T Consensus         3 ~~~v~~~~~~----------~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~   72 (129)
T cd04664           3 SVLVVPYRLT----------GEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIA   72 (129)
T ss_pred             EEEEEEEEeC----------CCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeeccccc
Confidence            4566777652          345899999987  6899999999999999999999999999999852221   000   


Q ss_pred             --cc-----------------------CCCceeeEEEEeHhHHHhhcCChhHHHHH
Q 030947          113 --EW-----------------------PEKNVRSRKWMSVAEARKVCQHWWMKEAL  143 (168)
Q Consensus       113 --~~-----------------------~e~e~~~~~W~~~~e~~~~~~~~~~~~~l  143 (168)
                        .+                       ...|..++.|++++++.+++.+++++.++
T Consensus        73 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~  128 (129)
T cd04664          73 FVEFTDNGRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLLWESNRRAW  128 (129)
T ss_pred             ccccCCCceEEEEeEEEEEcCCCCcccCCccccccEecCHHHHHHHHcChhhhhhh
Confidence              00                       11255679999999999999888776654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=2.3e-16  Score=115.57  Aligned_cols=89  Identities=13%  Similarity=0.161  Sum_probs=68.2

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-------  111 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-------  111 (168)
                      ++.+++++++.             .+|||+++++.+.|.+|||+++.|||+.+||.||++||||+.+.....+       
T Consensus         2 ~~~v~~~i~~~-------------~~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~   68 (123)
T cd04672           2 KVDVRAAIFKD-------------GKILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNK   68 (123)
T ss_pred             cceEEEEEEEC-------------CEEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEecccc
Confidence            45677777763             2899999988899999999999999999999999999999986433200       


Q ss_pred             --------cc--------------cCCCceeeEEEEeHhHHHhhcCChhHH
Q 030947          112 --------AE--------------WPEKNVRSRKWMSVAEARKVCQHWWMK  140 (168)
Q Consensus       112 --------~~--------------~~e~e~~~~~W~~~~e~~~~~~~~~~~  140 (168)
                              ..              .+..+..+++|++++++.++.....++
T Consensus        69 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~l~~~~~~~  119 (123)
T cd04672          69 HHPPPQPYQVYKLFFLCEILGGEFKPNIETSEVGFFALDDLPPLSEKRNTE  119 (123)
T ss_pred             ccCCCCceEEEEEEEEEEecCCcccCCCceeeeEEECHHHCcccccCCcch
Confidence                    00              012366789999999998877555443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.68  E-value=5.9e-16  Score=114.55  Aligned_cols=82  Identities=22%  Similarity=0.320  Sum_probs=61.1

Q ss_pred             EEEEEEEeCC--CceeccceeccCCCCHHHHHHHHHHHHHcCccceecc---------------c-ccc-----------
Q 030947           64 EVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ---------------L-AEW-----------  114 (168)
Q Consensus        64 ~vLLv~r~~~--~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~---------------~-~~~-----------  114 (168)
                      ++||+++.+.  +.|.+|||+++.||++.+||.||++||||+++.....               . ..|           
T Consensus        12 ~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~   91 (134)
T cd03675          12 RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAFAAELLEHLPDQ   91 (134)
T ss_pred             EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEEEEEEEECCCCCCC
Confidence            8999998753  5899999999999999999999999999998643220               0 000           


Q ss_pred             -CCCceeeEEEEeHhHHHhhc---CChhHHHHHHH
Q 030947          115 -PEKNVRSRKWMSVAEARKVC---QHWWMKEALDR  145 (168)
Q Consensus       115 -~e~e~~~~~W~~~~e~~~~~---~~~~~~~~l~~  145 (168)
                       .+.+..++.||+++++.++.   ..+.+...+..
T Consensus        92 ~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~  126 (134)
T cd03675          92 PLDSGIVRAHWLTLEEILALAARLRSPLVLRCIED  126 (134)
T ss_pred             CCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHH
Confidence             12356789999999999986   24444444443

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.68  E-value=3.3e-16  Score=118.58  Aligned_cols=91  Identities=16%  Similarity=0.149  Sum_probs=68.0

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCcccee--cc--
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE--DQ--  110 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~--~~--  110 (168)
                      .++.+++|+++.+            ++|||++|.+   +|.|.||||+++.|||+.+||+||++||||+++...  ..  
T Consensus        11 p~v~v~~vI~~~~------------g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~   78 (144)
T cd03430          11 PLVSIDLIVENED------------GQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLG   78 (144)
T ss_pred             CeEEEEEEEEeCC------------CeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEE
Confidence            3567888888642            3899999864   578999999999999999999999999999987543  10  


Q ss_pred             -cc------------------------c------cCCCceeeEEEEeHhHHHhh-cCChhHH
Q 030947          111 -LA------------------------E------WPEKNVRSRKWMSVAEARKV-CQHWWMK  140 (168)
Q Consensus       111 -~~------------------------~------~~e~e~~~~~W~~~~e~~~~-~~~~~~~  140 (168)
                       ..                        .      -+..+..+++|+++++++.. ..++..+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~  140 (144)
T cd03430          79 VFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLADDDVHPNTK  140 (144)
T ss_pred             EEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhccEeEEecHHHHhcCCCcCHHHH
Confidence             00                        0      01225678999999999875 3445443

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=2.1e-16  Score=116.22  Aligned_cols=74  Identities=26%  Similarity=0.246  Sum_probs=58.6

Q ss_pred             eEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------------------------------
Q 030947           63 LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-------------------------------  111 (168)
Q Consensus        63 ~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-------------------------------  111 (168)
                      .+|||+++...+.|.||||+++.|||+.+||.||++||||+++.....+                               
T Consensus        19 ~~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (132)
T cd04677          19 GEVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPNGDDEQYIVTLYYVTKVFG   98 (132)
T ss_pred             CCEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCCCCcEEEEEEEEEEEeccC
Confidence            3899999887789999999999999999999999999999986432210                               


Q ss_pred             -c-ccCCCceeeEEEEeHhHHHhhcCC
Q 030947          112 -A-EWPEKNVRSRKWMSVAEARKVCQH  136 (168)
Q Consensus       112 -~-~~~e~e~~~~~W~~~~e~~~~~~~  136 (168)
                       . ..+..+..+++||++++++.++..
T Consensus        99 ~~~~~~~~e~~~~~W~~~~e~~~~~~~  125 (132)
T cd04677          99 GKLVPDGDETLELKFFSLDELPELINP  125 (132)
T ss_pred             CcccCCCCceeeEEEEChhHCccchhH
Confidence             0 012336678999999999886544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.67  E-value=6.8e-16  Score=116.78  Aligned_cols=56  Identities=32%  Similarity=0.416  Sum_probs=49.5

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeCC-CceeccceeccCCCCHHHHHHHHHHHHHcCcc
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTG  105 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~-~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~  105 (168)
                      +|..+++++++.+            ++|||+++.+. +.|.+|||+++.||++.+||.||++||||+++
T Consensus         2 ~~~~v~~ii~~~~------------~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~   58 (147)
T cd03671           2 YRPNVGVVLFNED------------GKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDP   58 (147)
T ss_pred             CCceEEEEEEeCC------------CEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCc
Confidence            5678889988742            38999999876 59999999999999999999999999999985

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=3.1e-16  Score=115.02  Aligned_cols=85  Identities=26%  Similarity=0.333  Sum_probs=63.2

Q ss_pred             EEEEEEEEeeccccccccccCceEEEEEEEeCC--CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------
Q 030947           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-------  111 (168)
Q Consensus        41 ~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~--~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-------  111 (168)
                      .+++|+++.            +++|||+++.+.  +.|.||||+++.|||+.+||.||++||||+++.....+       
T Consensus         2 ~~~~ii~~~------------~~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~~~   69 (121)
T cd04669           2 RASIVIIND------------QGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQNG   69 (121)
T ss_pred             ceEEEEEeC------------CCEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEeeCC
Confidence            456777763            238999998754  67999999999999999999999999999987544411       


Q ss_pred             ---ccc--------------C------CCceeeEEEEeHhHHHhhcCCh
Q 030947          112 ---AEW--------------P------EKNVRSRKWMSVAEARKVCQHW  137 (168)
Q Consensus       112 ---~~~--------------~------e~e~~~~~W~~~~e~~~~~~~~  137 (168)
                         ..|              +      +.+..++.||++++++.+...|
T Consensus        70 ~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p  118 (121)
T cd04669          70 RTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRP  118 (121)
T ss_pred             cEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCC
Confidence               000              0      1123468999999999876555

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.67  E-value=4.2e-16  Score=116.81  Aligned_cols=81  Identities=19%  Similarity=0.224  Sum_probs=61.9

Q ss_pred             EEEEEEEeC-----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec-------------c-----------c-cc
Q 030947           64 EVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED-------------Q-----------L-AE  113 (168)
Q Consensus        64 ~vLLv~r~~-----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~-------------~-----------~-~~  113 (168)
                      +|||+||..     +|.|.+|||+++.|||+.+||.||++||||+++....             .           + ..
T Consensus        16 ~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (141)
T PRK15472         16 AYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGRKEEIYMIYLI   95 (141)
T ss_pred             EEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCCceeEEEEEEE
Confidence            899999864     2789999999999999999999999999998752211             0           0 00


Q ss_pred             c----------CCCceeeEEEEeHhHHHhhcCChhHHHHHH
Q 030947          114 W----------PEKNVRSRKWMSVAEARKVCQHWWMKEALD  144 (168)
Q Consensus       114 ~----------~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~  144 (168)
                      +          +..|..+++||+++++.++...+..+..+.
T Consensus        96 ~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~~~~~~~~  136 (141)
T PRK15472         96 FDCVSANRDVKINEEFQDYAWVKPEDLVHYDLNVATRKTLR  136 (141)
T ss_pred             EEeecCCCcccCChhhheEEEccHHHhccccccHHHHHHHH
Confidence            0          122567899999999999877776666654

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=4.5e-16  Score=113.04  Aligned_cols=94  Identities=21%  Similarity=0.187  Sum_probs=71.9

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceecc--------
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ--------  110 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~--------  110 (168)
                      +..+++++++.            +.++||++|...+.|.||||+++.||++.+||.||++||||+++.....        
T Consensus         2 ~~~v~~ii~~~------------~~~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~   69 (129)
T cd04676           2 LPGVTAVVRDD------------EGRVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPV   69 (129)
T ss_pred             cceEEEEEECC------------CCeEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeeccc
Confidence            34567777653            2389999998889999999999999999999999999999997643220        


Q ss_pred             --c--------c-----c----------cCCCceeeEEEEeHhHHHhhcCChhHHHHHH
Q 030947          111 --L--------A-----E----------WPEKNVRSRKWMSVAEARKVCQHWWMKEALD  144 (168)
Q Consensus       111 --~--------~-----~----------~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~  144 (168)
                        .        .     .          .+..+..+++|++++++..+..++.++.+++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~  128 (129)
T cd04676          70 HVVTYPNGDVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPLLMHPSMRLRID  128 (129)
T ss_pred             ceeecCCCCcEEEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccccCCHhHHHHhc
Confidence              0        0     0          0233566789999999999888887776653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=3.9e-16  Score=112.55  Aligned_cols=76  Identities=24%  Similarity=0.311  Sum_probs=60.2

Q ss_pred             EEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc---------------------ccCCCceeeE
Q 030947           64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA---------------------EWPEKNVRSR  122 (168)
Q Consensus        64 ~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~---------------------~~~e~e~~~~  122 (168)
                      +|||+++.+ +.|.+|||+++.||++.+||.||++||||+.+.....+.                     ..+..+...+
T Consensus        12 ~vLlv~r~~-~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~   90 (112)
T cd04667          12 RVLLVRKSG-SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDGGSTRHHVFVASVPPSAQPKPSNEIADC   90 (112)
T ss_pred             EEEEEEcCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeCCCEEEEEEEEEcCCcCCCCCchheeEE
Confidence            899999865 899999999999999999999999999999864333110                     0123366789


Q ss_pred             EEEeHhHHHhhcCChhHH
Q 030947          123 KWMSVAEARKVCQHWWMK  140 (168)
Q Consensus       123 ~W~~~~e~~~~~~~~~~~  140 (168)
                      +|++++++.++...+..+
T Consensus        91 ~W~~~~el~~~~~~~~~~  108 (112)
T cd04667          91 RWLSLDALGDLNASAATR  108 (112)
T ss_pred             EEecHHHhhhcccchhhh
Confidence            999999999987766443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.67  E-value=6.3e-16  Score=119.53  Aligned_cols=94  Identities=16%  Similarity=0.151  Sum_probs=68.2

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCcccee--cc--
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE--DQ--  110 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~--~~--  110 (168)
                      ..+.+++++++.            .++|||++|.+   .+.|.||||+++.|||+.+||+||++||||+++...  ..  
T Consensus        16 ~~~~v~~vI~~~------------~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~   83 (159)
T PRK15434         16 PLISLDFIVENS------------RGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYG   83 (159)
T ss_pred             ceEEEEEEEECC------------CCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEE
Confidence            456777887653            24899999874   378999999999999999999999999999985321  10  


Q ss_pred             -----cc---------------cc-----------CCCceeeEEEEeHhHHHhhc-CChhHHHHH
Q 030947          111 -----LA---------------EW-----------PEKNVRSRKWMSVAEARKVC-QHWWMKEAL  143 (168)
Q Consensus       111 -----~~---------------~~-----------~e~e~~~~~W~~~~e~~~~~-~~~~~~~~l  143 (168)
                           ..               .|           .+.++.+++|+++++++.+. .++..+..+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~  148 (159)
T PRK15434         84 VWQHFYDDNFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLASDNVHANSRAYF  148 (159)
T ss_pred             EEEeecccccCCCccceEEEEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhccccCHHHHHHh
Confidence                 00               00           11257789999999999874 445444443

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=6.3e-16  Score=113.24  Aligned_cols=55  Identities=25%  Similarity=0.174  Sum_probs=48.0

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccc
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI  106 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~  106 (168)
                      ++.+++++++.             ++|||+++...+.|.+|||+++.|||+.+||.||++||||+++.
T Consensus         1 ~~~~~~vi~~~-------------~~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~   55 (125)
T cd04689           1 HLRARAIVRAG-------------NKVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVS   55 (125)
T ss_pred             CeEEEEEEEeC-------------CEEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceee
Confidence            35677888753             28999999887899999999999999999999999999999754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.66  E-value=3.8e-16  Score=118.91  Aligned_cols=85  Identities=26%  Similarity=0.298  Sum_probs=66.2

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeCC---CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccccc
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAE  113 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~---~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~~  113 (168)
                      .....+++++.+..             +|||++|.+.   |.|.||||+++.|||+.+||.||++||||+++...+++..
T Consensus         8 ~p~~~v~~~i~~~~-------------~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v   74 (145)
T COG1051           8 TPLVAVGALIVRNG-------------RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAV   74 (145)
T ss_pred             CcceeeeEEEEeCC-------------EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEE
Confidence            34567788887642             8999999864   7899999999999999999999999999999765551100


Q ss_pred             --------------------c--------CCCceeeEEEEeHhHHHhhc
Q 030947          114 --------------------W--------PEKNVRSRKWMSVAEARKVC  134 (168)
Q Consensus       114 --------------------~--------~e~e~~~~~W~~~~e~~~~~  134 (168)
                                          .        +..+...+.||++++++.+.
T Consensus        75 ~~~~~rd~r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~~  123 (145)
T COG1051          75 FDDPGRDPRGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPELP  123 (145)
T ss_pred             ecCCCCCCceeEEEEEEEEEecCCCcccCChhhHhhcceecHhHccccc
Confidence                                0        11145678999999999864

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=5.3e-16  Score=114.20  Aligned_cols=87  Identities=22%  Similarity=0.346  Sum_probs=65.3

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEeCC--CceeccceeccCCCCHHHHHHHHHHHHHcCccceec------c
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED------Q  110 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~--~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~------~  110 (168)
                      |+.+++|+++.+             +|||+++.+.  +.|.+|||+++.|||+.+||.||++||||+.+....      .
T Consensus         1 r~~a~~iv~~~~-------------~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~   67 (128)
T cd04687           1 RNSAKAVIIKND-------------KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREY   67 (128)
T ss_pred             CcEEEEEEEECC-------------EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEE
Confidence            457888888632             8999998643  579999999999999999999999999999864321      0


Q ss_pred             c----------------ccc---------------CCCceeeEEEEeHhHHHhhcCChh
Q 030947          111 L----------------AEW---------------PEKNVRSRKWMSVAEARKVCQHWW  138 (168)
Q Consensus       111 ~----------------~~~---------------~e~e~~~~~W~~~~e~~~~~~~~~  138 (168)
                      .                ..|               ++.+..+++|+++++++++..+|.
T Consensus        68 ~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~p~  126 (128)
T cd04687          68 IGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYPS  126 (128)
T ss_pred             eccCccccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcccccCC
Confidence            0                000               112345899999999998876653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=6.2e-16  Score=113.74  Aligned_cols=83  Identities=24%  Similarity=0.306  Sum_probs=61.9

Q ss_pred             eEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--------------c----cc-------
Q 030947           63 LEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--------------A----EW-------  114 (168)
Q Consensus        63 ~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--------------~----~~-------  114 (168)
                      .+|||++|..   ++.|.+|||+++.||++.+||.||++||||++......+              .    .|       
T Consensus        13 ~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (130)
T cd04681          13 GELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDTLDLFFVCQVDDK   92 (130)
T ss_pred             CcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEEEEEEEEEEeCCC
Confidence            3899999864   479999999999999999999999999999976433300              0    00       


Q ss_pred             ----CCCceeeEEEEeHhHHH-hhcCChhHHHHHHH
Q 030947          115 ----PEKNVRSRKWMSVAEAR-KVCQHWWMKEALDR  145 (168)
Q Consensus       115 ----~e~e~~~~~W~~~~e~~-~~~~~~~~~~~l~~  145 (168)
                          +..+..+++|+++++++ +.+.++..+.+++.
T Consensus        93 ~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~~  128 (130)
T cd04681          93 PIVKAPDDVAELKWVVPQDIELENFAFPSIRQAVER  128 (130)
T ss_pred             CCcCChHHhheeEEecHHHCCcccCCcHHHHHHHHh
Confidence                11256678999999985 44566766666654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.65  E-value=2.2e-15  Score=115.64  Aligned_cols=58  Identities=29%  Similarity=0.347  Sum_probs=50.8

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeCC-CceeccceeccCCCCHHHHHHHHHHHHHcCccc
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGI  106 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~-~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~  106 (168)
                      .++..+++++++.+            ++|||+++.+. +.|.+|||+++.||++.+||.||++||||+.+.
T Consensus         6 ~~~~~v~~~i~~~~------------g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~   64 (156)
T PRK00714          6 GYRPNVGIILLNRQ------------GQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPE   64 (156)
T ss_pred             CCCCeEEEEEEecC------------CEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCcc
Confidence            46788999998753            38999999764 889999999999999999999999999999763

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=4.9e-16  Score=114.75  Aligned_cols=82  Identities=26%  Similarity=0.297  Sum_probs=61.4

Q ss_pred             EEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc------
Q 030947           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------  111 (168)
Q Consensus        41 ~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------  111 (168)
                      ++++++++.            +++|||+++.+   .+.|.+|||+++.||++.+||.||++||||+++.....+      
T Consensus         2 ~~~~vv~~~------------~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~   69 (123)
T cd04671           2 IVAAVILNN------------QGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG   69 (123)
T ss_pred             EEEEEEEcC------------CCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC
Confidence            467777753            23899999864   468999999999999999999999999999987544311      


Q ss_pred             ----------ccc---------CCCceeeEEEEeHhHHHhhc
Q 030947          112 ----------AEW---------PEKNVRSRKWMSVAEARKVC  134 (168)
Q Consensus       112 ----------~~~---------~e~e~~~~~W~~~~e~~~~~  134 (168)
                                ...         ++.+..+++||++++++..+
T Consensus        70 ~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~~~  111 (123)
T cd04671          70 GSWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLPLPL  111 (123)
T ss_pred             CeEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCCCcc
Confidence                      000         12345689999999995433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=4.2e-16  Score=112.67  Aligned_cols=74  Identities=20%  Similarity=0.267  Sum_probs=57.7

Q ss_pred             EEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccce--ecccc--------------------------ccC
Q 030947           64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV--EDQLA--------------------------EWP  115 (168)
Q Consensus        64 ~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~--~~~~~--------------------------~~~  115 (168)
                      ++||+++++.+.|.||||++++||++.+||.||++||||++...  ...+.                          ..+
T Consensus        13 ~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~   92 (118)
T cd04690          13 RVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRATVYVAELTGEPVP   92 (118)
T ss_pred             eEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEEEEEEEcccCCcCC
Confidence            89999998888999999999999999999999999999998655  33110                          002


Q ss_pred             CCceeeEEEEeHhHHHhhcCCh
Q 030947          116 EKNVRSRKWMSVAEARKVCQHW  137 (168)
Q Consensus       116 e~e~~~~~W~~~~e~~~~~~~~  137 (168)
                      ..+..++.|++++++......|
T Consensus        93 ~~e~~~~~W~~~~e~~~~~~~~  114 (118)
T cd04690          93 AAEIEEIRWVDYDDPADDRLAP  114 (118)
T ss_pred             CchhhccEEecHHHccccccCc
Confidence            2356678999999986654444

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=8.1e-16  Score=112.18  Aligned_cols=72  Identities=29%  Similarity=0.419  Sum_probs=55.8

Q ss_pred             EEEEEEEeC-----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecc-------------ccc-----c----CC
Q 030947           64 EVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ-------------LAE-----W----PE  116 (168)
Q Consensus        64 ~vLLv~r~~-----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~-------------~~~-----~----~e  116 (168)
                      +|||++|..     .+.|.||||+++.||++.+||.||++||||+++.....             +..     +    ..
T Consensus        12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (117)
T cd04691          12 KVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTSELQLLHYYVVTFWQGEIPA   91 (117)
T ss_pred             EEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCCCeEEEEEEEEEEecCCCCc
Confidence            899999863     47899999999999999999999999999998532220             000     0    22


Q ss_pred             CceeeEEEEeHhHHHhhcC
Q 030947          117 KNVRSRKWMSVAEARKVCQ  135 (168)
Q Consensus       117 ~e~~~~~W~~~~e~~~~~~  135 (168)
                      .|..++.||++++++....
T Consensus        92 ~E~~~~~W~~~~~l~~~~~  110 (117)
T cd04691          92 QEAAEVHWMTANDIVLASE  110 (117)
T ss_pred             ccccccEEcCHHHcchhhh
Confidence            3667899999999987543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=1.1e-15  Score=112.16  Aligned_cols=74  Identities=26%  Similarity=0.282  Sum_probs=58.5

Q ss_pred             EEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc------------------c---------cc--
Q 030947           64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------------------A---------EW--  114 (168)
Q Consensus        64 ~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------------------~---------~~--  114 (168)
                      +|||+++.+.+.|.+|||+++.||++.+||.||++||||+++.....+                  .         ..  
T Consensus        13 ~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~   92 (126)
T cd04688          13 KLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEFYYLVTLLDESLYQ   92 (126)
T ss_pred             EEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEEEEEEEeCCCcccc
Confidence            899999887789999999999999999999999999999976433200                  0         00  


Q ss_pred             -------CCCceeeEEEEeHhHHHhhcCCh
Q 030947          115 -------PEKNVRSRKWMSVAEARKVCQHW  137 (168)
Q Consensus       115 -------~e~e~~~~~W~~~~e~~~~~~~~  137 (168)
                             ++.+..++.|++++++..+...|
T Consensus        93 ~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p  122 (126)
T cd04688          93 QDIEILEEEGEKIVFRWIPIDELKEIKLYP  122 (126)
T ss_pred             cccceeccCCCEEEEEEeeHHHcccCccCC
Confidence                   12467789999999998765554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=1e-15  Score=112.50  Aligned_cols=83  Identities=28%  Similarity=0.320  Sum_probs=63.9

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEe---CCCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc---
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQ---KGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA---  112 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~---~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~---  112 (168)
                      +..+++++++.+            .++||++|.   ..+.|.+|||+++.|||+.+||.||++||||+++.....+.   
T Consensus         2 ~~~v~~ii~~~~------------~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~   69 (129)
T cd04678           2 RVGVGVFVLNPK------------GKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTN   69 (129)
T ss_pred             ceEEEEEEECCC------------CeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEe
Confidence            567888888743            389999988   36899999999999999999999999999999865433110   


Q ss_pred             -------------cc----------C----CCceeeEEEEeHhHHHhh
Q 030947          113 -------------EW----------P----EKNVRSRKWMSVAEARKV  133 (168)
Q Consensus       113 -------------~~----------~----e~e~~~~~W~~~~e~~~~  133 (168)
                                   .|          .    ..+..+++|++++++.++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~  117 (129)
T cd04678          70 DVFEEEGKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV  117 (129)
T ss_pred             EEeCCCCcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence                         00          0    123456899999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=8.1e-16  Score=113.90  Aligned_cols=89  Identities=25%  Similarity=0.234  Sum_probs=65.6

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEe---CCCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc--
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQ---KGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA--  112 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~---~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~--  112 (168)
                      .+..+++|+++.             .+|||+++.   ..+.|.+|||+++.||++.+||.||++||||+.+.....+.  
T Consensus        12 ~~~~v~~ii~~~-------------~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~   78 (130)
T cd04511          12 PKIIVGCVPEWE-------------GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVY   78 (130)
T ss_pred             CcEEEEEEEecC-------------CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEE
Confidence            456777777753             279999986   34789999999999999999999999999999875443110  


Q ss_pred             --------------------ccCCCceeeEEEEeHhHHHh-hcCChhH
Q 030947          113 --------------------EWPEKNVRSRKWMSVAEARK-VCQHWWM  139 (168)
Q Consensus       113 --------------------~~~e~e~~~~~W~~~~e~~~-~~~~~~~  139 (168)
                                          ..+..+..+++|+++++++. .+.++.+
T Consensus        79 ~~~~~~~~~~~f~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~l~~~~~  126 (130)
T cd04511          79 SVPHISQVYMFYRARLLDLDFAPGPESLEVRLFTEEEIPWDELAFPTV  126 (130)
T ss_pred             ecCCceEEEEEEEEEEcCCcccCCcchhceEEECHHHCCchhcccccc
Confidence                                01233566789999999973 3444433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=1.4e-15  Score=113.16  Aligned_cols=52  Identities=31%  Similarity=0.422  Sum_probs=46.1

Q ss_pred             EEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCcc
Q 030947           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTG  105 (168)
Q Consensus        41 ~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~  105 (168)
                      .+++|+++..             +|||+++.+.+.|.||||+++.||++.+||.||++||||+.+
T Consensus         2 ~~~~ii~~~~-------------~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~   53 (131)
T cd04686           2 AVRAIILQGD-------------KILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATN   53 (131)
T ss_pred             cEEEEEEECC-------------EEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCcc
Confidence            4677777632             899999987789999999999999999999999999999975

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.62  E-value=4.3e-15  Score=110.30  Aligned_cols=87  Identities=23%  Similarity=0.206  Sum_probs=66.0

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc----
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL----  111 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~----  111 (168)
                      ..+++++++.+            .++||+++.+    ++.|.+|||+++.||++.+||.||++||||+.+.....+    
T Consensus         3 ~~v~v~~~~~~------------~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~   70 (137)
T cd03424           3 DAVAVLPYDDD------------GKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFY   70 (137)
T ss_pred             CEEEEEEEcCC------------CeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEe
Confidence            35667777642            4899998753    357999999999999999999999999999987432200    


Q ss_pred             -----------------------cccCCCceeeEEEEeHhHHHhhcCChh
Q 030947          112 -----------------------AEWPEKNVRSRKWMSVAEARKVCQHWW  138 (168)
Q Consensus       112 -----------------------~~~~e~e~~~~~W~~~~e~~~~~~~~~  138 (168)
                                             ..+.+.|..+++|++++++.+++....
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~  120 (137)
T cd03424          71 PSPGFSDERIHLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADGE  120 (137)
T ss_pred             cCCcccCccEEEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcCC
Confidence                                   011234678899999999999886654

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.62  E-value=3.5e-15  Score=110.39  Aligned_cols=87  Identities=22%  Similarity=0.245  Sum_probs=67.3

Q ss_pred             EEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec--------------ccccc---------CC
Q 030947           64 EVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED--------------QLAEW---------PE  116 (168)
Q Consensus        64 ~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~--------------~~~~~---------~e  116 (168)
                      +|||++|..    .|.|.||||+++.||++.+||.||++||||+++....              .+..|         ..
T Consensus        16 ~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (135)
T PRK10546         16 KILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSGRRIHLHAWHVPDFHGELQA   95 (135)
T ss_pred             EEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEEEEEEEEEecCcccc
Confidence            899999864    3789999999999999999999999999999865332              00111         11


Q ss_pred             CceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHH
Q 030947          117 KNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL  150 (168)
Q Consensus       117 ~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~  150 (168)
                      .+...++|++++++.++...+.++.+++.+....
T Consensus        96 ~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~  129 (135)
T PRK10546         96 HEHQALVWCTPEEALRYPLAPADIPLLEAFMALR  129 (135)
T ss_pred             cccceeEEcCHHHcccCCCCcCcHHHHHHHHHhh
Confidence            1456789999999999877787888887766653

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.62  E-value=1.6e-15  Score=110.03  Aligned_cols=71  Identities=25%  Similarity=0.330  Sum_probs=54.5

Q ss_pred             EEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccc--eecc--------------c------ccc---
Q 030947           64 EVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI--VEDQ--------------L------AEW---  114 (168)
Q Consensus        64 ~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~--~~~~--------------~------~~~---  114 (168)
                      +|||++|.+    .+.|.+|||+++.||++.+||.||++||||+.+.  ....              +      ..+   
T Consensus        12 ~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~   91 (120)
T cd04683          12 EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRIGLFFTVRRWSGE   91 (120)
T ss_pred             EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCCceEEEEEEEEEeecCc
Confidence            899999874    4689999999999999999999999999999864  2110              0      000   


Q ss_pred             ----CCCceeeEEEEeHhHHHhhc
Q 030947          115 ----PEKNVRSRKWMSVAEARKVC  134 (168)
Q Consensus       115 ----~e~e~~~~~W~~~~e~~~~~  134 (168)
                          +..+..+++|+++++++..+
T Consensus        92 ~~~~~~~e~~~~~W~~~~~l~~~~  115 (120)
T cd04683          92 PRNCEPDKCAELRWFPLDALPDDT  115 (120)
T ss_pred             cccCCCCcEeeEEEEchHHCcchh
Confidence                12256679999999987754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=2.6e-15  Score=109.75  Aligned_cols=72  Identities=24%  Similarity=0.125  Sum_probs=55.7

Q ss_pred             eEEEEEEEeC------CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec-----cc--------------------
Q 030947           63 LEVLVISSQK------GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED-----QL--------------------  111 (168)
Q Consensus        63 ~~vLLv~r~~------~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~-----~~--------------------  111 (168)
                      ++|||++|..      +|.|.||||+++.||++.+||.||++||||+++....     ..                    
T Consensus        12 g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~   91 (122)
T cd04682          12 GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSASPPGTEHVFVVPLTARE   91 (122)
T ss_pred             CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccCCCCceEEEEEEEEecCC
Confidence            4899999864      2789999999999999999999999999999864222     00                    


Q ss_pred             -cccCCCceeeEEEEeHhHHHhhc
Q 030947          112 -AEWPEKNVRSRKWMSVAEARKVC  134 (168)
Q Consensus       112 -~~~~e~e~~~~~W~~~~e~~~~~  134 (168)
                       ......+..+++|++++++.+..
T Consensus        92 ~~~~~~~E~~~~~W~~~~el~~~~  115 (122)
T cd04682          92 DAILFGDEGQALRLMTVEEFLAHE  115 (122)
T ss_pred             CccccCchhheeecccHHHHhhcc
Confidence             00123356789999999997754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.60  E-value=4.6e-15  Score=110.37  Aligned_cols=71  Identities=23%  Similarity=0.258  Sum_probs=56.7

Q ss_pred             eEEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccccc-----------------------cCCC
Q 030947           63 LEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAE-----------------------WPEK  117 (168)
Q Consensus        63 ~~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~~-----------------------~~e~  117 (168)
                      .+|||++++.  .+.|.+|||+++.||++.+||.||++||||+++.....+..                       ....
T Consensus        12 ~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~   91 (131)
T cd03429          12 DRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWPFPSSLMLGFTAEADSGEIVVDDD   91 (131)
T ss_pred             CEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCCCCceEEEEEEEEEcCCcccCCch
Confidence            5899999875  58899999999999999999999999999998754441110                       0122


Q ss_pred             ceeeEEEEeHhHHHhh
Q 030947          118 NVRSRKWMSVAEARKV  133 (168)
Q Consensus       118 e~~~~~W~~~~e~~~~  133 (168)
                      +..++.|++++++.++
T Consensus        92 E~~~~~w~~~~el~~~  107 (131)
T cd03429          92 ELEDARWFSRDEVRAA  107 (131)
T ss_pred             hhhccEeecHHHHhhc
Confidence            5667999999998884

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.58  E-value=6.9e-15  Score=112.79  Aligned_cols=73  Identities=22%  Similarity=0.194  Sum_probs=56.7

Q ss_pred             CceEEEEEEEeC-----CCceeccceeccCC-CCHHHHHHHHHHHHHcCccceecccc---------------------c
Q 030947           61 EDLEVLVISSQK-----GKGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVEDQLA---------------------E  113 (168)
Q Consensus        61 ~~~~vLLv~r~~-----~~~W~lPgG~ve~g-Et~~~aA~REl~EEtGi~~~~~~~~~---------------------~  113 (168)
                      ++.+|||++|..     +|.|.||||+++.| |++.+||.||++||||+++.....+.                     .
T Consensus        14 ~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~   93 (157)
T cd03426          14 GELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGFVVTPVVGLVPP   93 (157)
T ss_pred             CceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccCCCEEEEEEEEECC
Confidence            346899999874     47899999999999 99999999999999999865433100                     0


Q ss_pred             -----cCCCceeeEEEEeHhHHHhh
Q 030947          114 -----WPEKNVRSRKWMSVAEARKV  133 (168)
Q Consensus       114 -----~~e~e~~~~~W~~~~e~~~~  133 (168)
                           ....|..++.|++++++.+.
T Consensus        94 ~~~~~~~~~E~~~~~W~~~~el~~~  118 (157)
T cd03426          94 PLPLVLNPDEVAEVFEVPLSFLLDP  118 (157)
T ss_pred             CCCCCCCHHHhheeEEEcHHHHhCc
Confidence                 01125677899999999885

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.56  E-value=1.3e-14  Score=108.20  Aligned_cols=77  Identities=21%  Similarity=0.249  Sum_probs=58.7

Q ss_pred             CceEEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCcccee-----c--c------------------ccc
Q 030947           61 EDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE-----D--Q------------------LAE  113 (168)
Q Consensus        61 ~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~-----~--~------------------~~~  113 (168)
                      ++.++||+++.+  .+.|.||||+++.|||+.+||.||++||||+.+...     .  .                  ...
T Consensus        11 ~~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (132)
T cd04661          11 DDTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFF   90 (132)
T ss_pred             cCcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEEEE
Confidence            445899999875  368999999999999999999999999999965431     0  0                  000


Q ss_pred             c----------CCCceeeEEEEeHhHHHhhcCCh
Q 030947          114 W----------PEKNVRSRKWMSVAEARKVCQHW  137 (168)
Q Consensus       114 ~----------~e~e~~~~~W~~~~e~~~~~~~~  137 (168)
                      |          ...++.+++|++++++.+++..+
T Consensus        91 f~~~~~~g~~~~~~e~~~~~W~~~~el~~~l~~~  124 (132)
T cd04661          91 FKARYMSGQFELSQNQVDFKWLAKEELQKYLNPP  124 (132)
T ss_pred             EEEEEecCccccCCCcceeEecCHHHHHhhcCHH
Confidence            0          12366789999999999976543

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.56  E-value=3e-14  Score=122.06  Aligned_cols=96  Identities=20%  Similarity=0.193  Sum_probs=69.6

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec------
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED------  109 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~------  109 (168)
                      .+.+++|+++.             ++|||++|.+   .|.|.+|||+++.|||+.+||.||++||||+++....      
T Consensus       203 ~vtv~avv~~~-------------g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~  269 (340)
T PRK05379        203 FVTVDAVVVQS-------------GHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIR  269 (340)
T ss_pred             ceEEEEEEEEC-------------CEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeee
Confidence            36777777753             2899999875   4789999999999999999999999999999742111      


Q ss_pred             ---cc--------------------c--c----cCCCceeeEEEEeHhHHHhh--cCChhHHHHHHHHH
Q 030947          110 ---QL--------------------A--E----WPEKNVRSRKWMSVAEARKV--CQHWWMKEALDRLV  147 (168)
Q Consensus       110 ---~~--------------------~--~----~~e~e~~~~~W~~~~e~~~~--~~~~~~~~~l~~~~  147 (168)
                         .+                    .  .    ....+..++.|++++++..+  ..+.+...++..+.
T Consensus       270 ~~~~f~~p~r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~~~~~dh~~ii~~~~  338 (340)
T PRK05379        270 DQQVFDHPGRSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAMRDRMFEDHFQIITHFL  338 (340)
T ss_pred             eeEEEcCCCCCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhhhhhhhhHHHHHHHHHh
Confidence               00                    0  0    01235678999999999875  34455566665543

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.55  E-value=1.3e-14  Score=106.58  Aligned_cols=74  Identities=22%  Similarity=0.144  Sum_probs=55.8

Q ss_pred             eEEEEEEEeC-----CCceecc-ceeccCCCCHHHHHHHHHHHHHcCccceec------c-cc--------c--------
Q 030947           63 LEVLVISSQK-----GKGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVED------Q-LA--------E--------  113 (168)
Q Consensus        63 ~~vLLv~r~~-----~~~W~lP-gG~ve~gEt~~~aA~REl~EEtGi~~~~~~------~-~~--------~--------  113 (168)
                      ++|||++|..     +|.|.+| ||+++.||++ +||.||++||||+++....      . ..        .        
T Consensus        12 g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (127)
T cd04693          12 GELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAEGFDDYYLFYADVEIG   90 (127)
T ss_pred             CeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecCCeEEEEEEEecCccc
Confidence            3899988863     3799998 9999999999 9999999999999864221      0 00        0        


Q ss_pred             ---cCCCceeeEEEEeHhHHHhhcCCh
Q 030947          114 ---WPEKNVRSRKWMSVAEARKVCQHW  137 (168)
Q Consensus       114 ---~~e~e~~~~~W~~~~e~~~~~~~~  137 (168)
                         .+..+..+++|++++++.+++...
T Consensus        91 ~~~~~~~E~~~~~w~~~~el~~~~~~~  117 (127)
T cd04693          91 KLILQKEEVDEVKFVSKDEIDGLIGHG  117 (127)
T ss_pred             ccccCHHHhhhEEEeCHHHHHHHHhcC
Confidence               011256679999999999987554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.54  E-value=2.2e-14  Score=105.77  Aligned_cols=77  Identities=22%  Similarity=0.182  Sum_probs=57.8

Q ss_pred             eEEEEEEEeC-----CCceec-cceeccCCCCHHHHHHHHHHHHHcCccceeccc------------------c------
Q 030947           63 LEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------------------A------  112 (168)
Q Consensus        63 ~~vLLv~r~~-----~~~W~l-PgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------------------~------  112 (168)
                      ++|||++|..     +|.|.+ |||+++.||++.+||+||++||||+.+.....+                  .      
T Consensus        12 ~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~   91 (126)
T cd04697          12 GKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWGKVFSCVYDGPL   91 (126)
T ss_pred             CeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCceEEEEEEEEEECCCC
Confidence            3899988763     467999 699999999999999999999999987522200                  0      


Q ss_pred             ccCCCceeeEEEEeHhHHHhhcCChhH
Q 030947          113 EWPEKNVRSRKWMSVAEARKVCQHWWM  139 (168)
Q Consensus       113 ~~~e~e~~~~~W~~~~e~~~~~~~~~~  139 (168)
                      .....|..++.|++++++.+++....+
T Consensus        92 ~~~~~E~~~~~w~~~~el~~~~~~~~~  118 (126)
T cd04697          92 KLQEEEVEEITWLSINEILQFKEGENI  118 (126)
T ss_pred             CCCHhHhhheEEcCHHHHHHHhhcCcc
Confidence            011235667899999999998765543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.53  E-value=5.9e-14  Score=110.21  Aligned_cols=89  Identities=25%  Similarity=0.230  Sum_probs=61.8

Q ss_pred             eEEEEEEEeCC-----Cce-eccceeccCCCCHHHHHHHHHHHHHcCccceeccc--------------cc---------
Q 030947           63 LEVLVISSQKG-----KGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--------------AE---------  113 (168)
Q Consensus        63 ~~vLLv~r~~~-----~~W-~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--------------~~---------  113 (168)
                      ++|||.+|...     |.| .+|||++++|||+.+||.||++||||+.......+              ..         
T Consensus        49 g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  128 (180)
T PRK15393         49 GKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENCRVWGALFSCVSHGPF  128 (180)
T ss_pred             CeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCceEEEEEEEEEeCCCC
Confidence            48999888642     334 68999999999999999999999999975322100              00         


Q ss_pred             -cCCCceeeEEEEeHhHHHhhc--CChhHHHHHHHHHHHHh
Q 030947          114 -WPEKNVRSRKWMSVAEARKVC--QHWWMKEALDRLVMRLT  151 (168)
Q Consensus       114 -~~e~e~~~~~W~~~~e~~~~~--~~~~~~~~l~~~~~~~~  151 (168)
                       ....|..++.|++++++.++.  ..+.....+..+.....
T Consensus       129 ~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~l~~~~  169 (180)
T PRK15393        129 ALQEEEVSEVCWMTPEEITARCDEFTPDSLKALALWLTRNA  169 (180)
T ss_pred             CCChHHeeEEEECCHHHHhhhhhhcCccHHHHHHHHHHhhc
Confidence             012266789999999999874  22444455555544443

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.53  E-value=4.5e-14  Score=102.89  Aligned_cols=72  Identities=22%  Similarity=0.255  Sum_probs=54.4

Q ss_pred             eEEEEEEEeC-----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------------------c--cc--
Q 030947           63 LEVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-------------------A--EW--  114 (168)
Q Consensus        63 ~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-------------------~--~~--  114 (168)
                      .+|||++|..     ++.|.||||+++.||++.+||.||++||||+.+......                   .  ..  
T Consensus        13 ~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (129)
T cd04699          13 GRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVIYLVFVCEALSG   92 (129)
T ss_pred             CcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEEEEEEEEeeecCC
Confidence            3799998874     468999999999999999999999999999976433310                   0  00  


Q ss_pred             ---CCCceeeEEEEeHhHHHhhc
Q 030947          115 ---PEKNVRSRKWMSVAEARKVC  134 (168)
Q Consensus       115 ---~e~e~~~~~W~~~~e~~~~~  134 (168)
                         +..+...++|++++++..+.
T Consensus        93 ~~~~~~e~~~~~w~~~~el~~~~  115 (129)
T cd04699          93 AVKLSDEHEEYAWVTLEELAILK  115 (129)
T ss_pred             cccCChhheEEEEecHHHhhhhh
Confidence               12255678999999986543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.52  E-value=5.1e-14  Score=106.03  Aligned_cols=59  Identities=19%  Similarity=0.097  Sum_probs=48.1

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceec-cceeccCCCCHHHHHHHHHHHHHcCcc
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTG  105 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~l-PgG~ve~gEt~~~aA~REl~EEtGi~~  105 (168)
                      ++.++.+++++..   +      ++.++||.+|..     +|.|.+ |||+++.|||+.+||.||++||||+..
T Consensus         1 ~h~~v~~~v~~~~---~------~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~   65 (144)
T cd04692           1 WHRTFHCWIITKD---E------GKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDV   65 (144)
T ss_pred             CceEEEEEEEEcc---C------CCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCC
Confidence            3567778888754   2      346899988864     378999 599999999999999999999999964

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.51  E-value=1.4e-13  Score=100.10  Aligned_cols=84  Identities=23%  Similarity=0.291  Sum_probs=61.7

Q ss_pred             eEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecc--------------c-----cccC----
Q 030947           63 LEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ--------------L-----AEWP----  115 (168)
Q Consensus        63 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~--------------~-----~~~~----  115 (168)
                      ++|||.+|..    .|.|.||||+++.||++.+||.||++||||++......              +     ..+.    
T Consensus        16 ~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (129)
T PRK10776         16 NEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITLWFWLVESWEGEPW   95 (129)
T ss_pred             CEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEEEEEEEEEECCccC
Confidence            4899999875    37899999999999999999999999999998532220              0     0011    


Q ss_pred             CCceeeEEEEeHhHHHhhcCChhHHHHHHHH
Q 030947          116 EKNVRSRKWMSVAEARKVCQHWWMKEALDRL  146 (168)
Q Consensus       116 e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~  146 (168)
                      ..+..+.+|+++++++.....+.++.+++.+
T Consensus        96 ~~e~~~~~W~~~~~l~~~~~p~~~~~~~~~~  126 (129)
T PRK10776         96 GKEGQPGRWVSQVALNADEFPPANEPIIAKL  126 (129)
T ss_pred             CccCCccEEecHHHCccCCCCcccHHHHHHH
Confidence            1145577999999999875555555555544

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.50  E-value=1.5e-13  Score=108.14  Aligned_cols=78  Identities=23%  Similarity=0.100  Sum_probs=60.2

Q ss_pred             eEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc--------------c-----------
Q 030947           63 LEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA--------------E-----------  113 (168)
Q Consensus        63 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~--------------~-----------  113 (168)
                      .+|||+++..    ...|+||||.++.||++.+||+||++||||+.+..+..+.              .           
T Consensus        59 ~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~~~~~~f~a~~~~~~~~  138 (185)
T PRK11762         59 DTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFSSKMNIVLAEDLYPERL  138 (185)
T ss_pred             CEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccCcEEEEEEEEccccccC
Confidence            4799999864    3569999999999999999999999999999876554110              0           


Q ss_pred             -cCCCceeeEEEEeHhHHHhhcCChhHH
Q 030947          114 -WPEKNVRSRKWMSVAEARKVCQHWWMK  140 (168)
Q Consensus       114 -~~e~e~~~~~W~~~~e~~~~~~~~~~~  140 (168)
                       ..+.|..+..|++++++.+++..+.+.
T Consensus       139 ~~~e~E~i~~~~~~~~e~~~~~~~g~i~  166 (185)
T PRK11762        139 EGDEPEPLEVVRWPLADLDELLARPDFS  166 (185)
T ss_pred             CCCCCceeEEEEEcHHHHHHHHHcCCCC
Confidence             012345578999999999987665554

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.49  E-value=1.2e-13  Score=106.53  Aligned_cols=88  Identities=16%  Similarity=0.172  Sum_probs=66.3

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceecc-ceeccCCCCHHHHHHHHHHHHHcCccceeccc
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVEDQL  111 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~  111 (168)
                      ++..+++++++.+            .+|||.+|..     +|.|.+| ||+++.|||+.+||.||++||||+.+.....+
T Consensus        29 ~~~~v~v~i~~~~------------~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~   96 (165)
T cd02885          29 LHRAFSVFLFNSK------------GRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELV   96 (165)
T ss_pred             ceeEEEEEEEcCC------------CcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhc
Confidence            3778888888643            3799998864     4789986 89999999999999999999999986422210


Q ss_pred             --------------------ccc----------CCCceeeEEEEeHhHHHhhcCCh
Q 030947          112 --------------------AEW----------PEKNVRSRKWMSVAEARKVCQHW  137 (168)
Q Consensus       112 --------------------~~~----------~e~e~~~~~W~~~~e~~~~~~~~  137 (168)
                                          ..|          +..|..+++|++++++.+++...
T Consensus        97 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~Ev~~~~w~~~~el~~~~~~~  152 (165)
T cd02885          97 LPRFRYRAPDDGGLVEHEIDHVFFARADVTLIPNPDEVSEYRWVSLEDLKELVAAA  152 (165)
T ss_pred             cceEEEEEEcCCCceeeEEEEEEEEEeCCCCCCCccceeEEEEECHHHHHHHHHhC
Confidence                                000          12366789999999999987543

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.49  E-value=1.5e-13  Score=113.76  Aligned_cols=78  Identities=17%  Similarity=0.223  Sum_probs=60.8

Q ss_pred             eEEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc-----------------------ccCCC
Q 030947           63 LEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA-----------------------EWPEK  117 (168)
Q Consensus        63 ~~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~-----------------------~~~e~  117 (168)
                      .++||+++..  .+.|.+|||+++.|||+++||.||++||||+++.....+.                       ...+.
T Consensus       143 ~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~~~p~~lm~~f~a~~~~~~~~~~~~  222 (256)
T PRK00241        143 DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQPWPFPHSLMLGFHADYDSGEIVFDPK  222 (256)
T ss_pred             CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEeecCCCeEEEEEEEEecCCcccCCcc
Confidence            4899999864  4789999999999999999999999999999865444110                       01223


Q ss_pred             ceeeEEEEeHhHHHhhcCChhHH
Q 030947          118 NVRSRKWMSVAEARKVCQHWWMK  140 (168)
Q Consensus       118 e~~~~~W~~~~e~~~~~~~~~~~  140 (168)
                      |..+++||+++|++.+.....+.
T Consensus       223 Ei~~a~W~~~del~~lp~~~sia  245 (256)
T PRK00241        223 EIADAQWFRYDELPLLPPSGTIA  245 (256)
T ss_pred             cEEEEEEECHHHCcccCCchHHH
Confidence            66789999999998876655554

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.49  E-value=8.6e-14  Score=103.88  Aligned_cols=57  Identities=30%  Similarity=0.399  Sum_probs=49.1

Q ss_pred             EEEEEEEEeeccccccccccCceEEEEEEE-------eCCCceeccceeccCCCCHHHHHHHHHHHHHcCccc
Q 030947           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISS-------QKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI  106 (168)
Q Consensus        41 ~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r-------~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~  106 (168)
                      .+|+|+|+.+   +      +..+|||+++       ...+.|.||||+++.||++.+||+||++||||+++.
T Consensus         2 ~~g~v~~~~~---~------~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~   65 (126)
T cd04662           2 SAGILLYRFR---D------GRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD   65 (126)
T ss_pred             eEEEEEEEEc---C------CcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence            6789999875   2      4568999985       345789999999999999999999999999999864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.47  E-value=3.5e-13  Score=96.75  Aligned_cols=83  Identities=22%  Similarity=0.190  Sum_probs=62.1

Q ss_pred             eEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc----c--------------cc-----C
Q 030947           63 LEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL----A--------------EW-----P  115 (168)
Q Consensus        63 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~----~--------------~~-----~  115 (168)
                      .++||++|.+    .|.|.||||+++.+|++.+||.||++||||++......+    .              ..     .
T Consensus        13 ~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (124)
T cd03425          13 GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVFLVELWSGEPQ   92 (124)
T ss_pred             CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEEEEeeeCCCcc
Confidence            4899998864    468999999999999999999999999999986432200    0              00     1


Q ss_pred             CCceeeEEEEeHhHHHhhcCChhHHHHHHH
Q 030947          116 EKNVRSRKWMSVAEARKVCQHWWMKEALDR  145 (168)
Q Consensus       116 e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~  145 (168)
                      ..+.....|++++++..+...+.++.+++.
T Consensus        93 ~~e~~~~~W~~~~el~~~~~~~~~~~~l~~  122 (124)
T cd03425          93 LLEHQELRWVPPEELDDLDFPPADVPIVAA  122 (124)
T ss_pred             cccCceEEEeeHHHcccCCCCcccHHHHHh
Confidence            124567899999999987666666555543

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>TIGR00586 mutt mutator mutT protein

Probab=99.45  E-value=6.2e-13  Score=97.02  Aligned_cols=82  Identities=20%  Similarity=0.202  Sum_probs=59.2

Q ss_pred             eEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecc--------------ccc----cC-----
Q 030947           63 LEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ--------------LAE----WP-----  115 (168)
Q Consensus        63 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~--------------~~~----~~-----  115 (168)
                      .+|||.+|..    .|.|.||||+++.||++.+||.||++||||+.+.....              +..    ..     
T Consensus        16 ~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~   95 (128)
T TIGR00586        16 GEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWFWLLERWEGGPPG   95 (128)
T ss_pred             CEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEEEEEEEEcCCCcC
Confidence            3799998864    36899999999999999999999999999998543320              000    01     


Q ss_pred             CCceeeEEEEeHhHHHhhcCChhHHHHHH
Q 030947          116 EKNVRSRKWMSVAEARKVCQHWWMKEALD  144 (168)
Q Consensus       116 e~e~~~~~W~~~~e~~~~~~~~~~~~~l~  144 (168)
                      ..+...+.|++++++.++.....+..+++
T Consensus        96 ~~~~~~~~W~~~~~l~~~~~p~~~~~~~~  124 (128)
T TIGR00586        96 KEGQPEEWWVLVGLLADDFFPAANPVIIK  124 (128)
T ss_pred             cccccccEEeCHHHCCccCCCCCCHHHHH
Confidence            11345679999999998755544444443

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.44  E-value=2.4e-13  Score=96.63  Aligned_cols=74  Identities=27%  Similarity=0.401  Sum_probs=56.8

Q ss_pred             eEEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec------ccc----------c-----------
Q 030947           63 LEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED------QLA----------E-----------  113 (168)
Q Consensus        63 ~~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~------~~~----------~-----------  113 (168)
                      .++||+++..  .+.|.+|||+++.||++.++|.||+.||+|+......      ...          .           
T Consensus        12 ~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (123)
T cd02883          12 GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVVFVFLARLVGGEPT   91 (123)
T ss_pred             CCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEEEEEEEEeCCCCcC
Confidence            4899999988  6899999999999999999999999999999864221      000          0           


Q ss_pred             -cCCCceeeEEEEeHhHHHhhcCC
Q 030947          114 -WPEKNVRSRKWMSVAEARKVCQH  136 (168)
Q Consensus       114 -~~e~e~~~~~W~~~~e~~~~~~~  136 (168)
                       ....+....+|++++++.+....
T Consensus        92 ~~~~~e~~~~~w~~~~~l~~~~~~  115 (123)
T cd02883          92 LLPPDEISEVRWVTLDELPALALS  115 (123)
T ss_pred             CCCCCccceEEEEcHHHCcccccc
Confidence             11134567899999999875433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.44  E-value=7.2e-13  Score=104.16  Aligned_cols=89  Identities=18%  Similarity=0.171  Sum_probs=64.8

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceecc-ceeccCCCCHHHHHHHHHHHHHcCccceec-
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVED-  109 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~gEt~~~aA~REl~EEtGi~~~~~~-  109 (168)
                      .++..+++++++.+            ++|||++|..     +|.|.+| ||+++.||++.+||+||++||||+++.... 
T Consensus        32 ~~h~av~v~i~~~~------------g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~   99 (184)
T PRK03759         32 PLHLAFSCYLFDAD------------GRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLEL   99 (184)
T ss_pred             CeeeEEEEEEEcCC------------CeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCcccccc
Confidence            45677888887642            3899998753     3567765 799999999999999999999999864211 


Q ss_pred             cc-------------------ccc----------CCCceeeEEEEeHhHHHhhcCCh
Q 030947          110 QL-------------------AEW----------PEKNVRSRKWMSVAEARKVCQHW  137 (168)
Q Consensus       110 ~~-------------------~~~----------~e~e~~~~~W~~~~e~~~~~~~~  137 (168)
                      .+                   ..|          ...|..++.|++++++.+++...
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~~~~~Ev~~~~W~~~~el~~~i~~~  156 (184)
T PRK03759        100 VLPDFRYRATDPNGIVENEVCPVFAARVTSALQPNPDEVMDYQWVDPADLLRAVDAT  156 (184)
T ss_pred             ccceEEEEEecCCCceeeEEEEEEEEEECCCCCCChhHeeeEEEECHHHHHHHHHhC
Confidence            00                   001          12256789999999999987543

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.42  E-value=5e-13  Score=98.57  Aligned_cols=45  Identities=36%  Similarity=0.438  Sum_probs=40.1

Q ss_pred             EEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceec
Q 030947           64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED  109 (168)
Q Consensus        64 ~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~  109 (168)
                      ++||+++. .+.|.||||+++.||++.+||.||++||||+.+....
T Consensus        12 ~vLl~~~~-~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~   56 (118)
T cd04665          12 GLLLVRHK-DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLT   56 (118)
T ss_pred             EEEEEEeC-CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceE
Confidence            79999887 4679999999999999999999999999999874444

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.42  E-value=5.5e-13  Score=99.94  Aligned_cols=53  Identities=30%  Similarity=0.313  Sum_probs=45.3

Q ss_pred             EEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceeccceeccCCCCHHHHHHHHHHHHHcCcc
Q 030947           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTG  105 (168)
Q Consensus        41 ~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~  105 (168)
                      .+++++++.+            ++|||+++.+     .+.|.+|||+++.||++.+||.||++||||+.+
T Consensus         2 ~~~~~i~~~~------------g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~   59 (133)
T cd04685           2 AARVVLLDPD------------DRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITV   59 (133)
T ss_pred             eEEEEEEcCC------------CeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCcc
Confidence            4677787643            3899998864     358999999999999999999999999999987

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.41  E-value=1.2e-12  Score=99.46  Aligned_cols=44  Identities=32%  Similarity=0.346  Sum_probs=39.8

Q ss_pred             eEEEEEEEeC-----CCceeccceeccCCCCHHHHHHHHHHHHHcCccc
Q 030947           63 LEVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI  106 (168)
Q Consensus        63 ~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~  106 (168)
                      .+|||++|..     +|.|.+|||+++.||++.+||.||++||+|+...
T Consensus        13 ~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~   61 (143)
T cd04694          13 QKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLD   61 (143)
T ss_pred             CEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCcc
Confidence            4899999963     4789999999999999999999999999999864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.41  E-value=6e-13  Score=105.13  Aligned_cols=79  Identities=22%  Similarity=0.116  Sum_probs=59.3

Q ss_pred             ceEEEEEEEeC---------CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc------------------c--
Q 030947           62 DLEVLVISSQK---------GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------------------A--  112 (168)
Q Consensus        62 ~~~vLLv~r~~---------~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------------------~--  112 (168)
                      +.+|||+++.+         ...|+||+|+++.||++.+||+||++||||+.+.....+                  .  
T Consensus        56 ~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g~~~~~~~~f~a~~  135 (185)
T TIGR00052        56 KDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSPGGVTELIHLFIAEV  135 (185)
T ss_pred             CCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCCCCCcEEEEEEEEEE
Confidence            34899999753         246899999999999999999999999999987544410                  0  


Q ss_pred             ---------ccCCCceeeEEEEeHhHHHhhcCChhHH
Q 030947          113 ---------EWPEKNVRSRKWMSVAEARKVCQHWWMK  140 (168)
Q Consensus       113 ---------~~~e~e~~~~~W~~~~e~~~~~~~~~~~  140 (168)
                               ..++.+.....|++++++.+++....+.
T Consensus       136 ~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~i~  172 (185)
T TIGR00052       136 DDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGKID  172 (185)
T ss_pred             chhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCCCC
Confidence                     0012244578899999999998665554

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.40  E-value=1.5e-12  Score=103.37  Aligned_cols=88  Identities=24%  Similarity=0.297  Sum_probs=62.8

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceeccceeccCC-CCHHHHHHHHHHHHHcCccceeccc
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVEDQL  111 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~g-Et~~~aA~REl~EEtGi~~~~~~~~  111 (168)
                      .+..+.++++..+          ++.+||+++|..     .|.|+||||++|.+ |++.+||+||++||||++......+
T Consensus        29 ~~~aavvl~l~~~----------~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~l   98 (190)
T PRK10707         29 QRQAAVLIPIVRR----------PQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVI   98 (190)
T ss_pred             CCCeEEEEEEEEC----------CCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEE
Confidence            4456666666543          334788888652     37899999999975 6899999999999999986544300


Q ss_pred             ---c---------------------cc--CCCceeeEEEEeHhHHHhhcC
Q 030947          112 ---A---------------------EW--PEKNVRSRKWMSVAEARKVCQ  135 (168)
Q Consensus       112 ---~---------------------~~--~e~e~~~~~W~~~~e~~~~~~  135 (168)
                         .                     .+  ++.|..++.|++++++.++..
T Consensus        99 g~l~~~~~~~~~~~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~~  148 (190)
T PRK10707         99 GVLPPVDSSTGYQVTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLGR  148 (190)
T ss_pred             EEeeeeeccCCcEEEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCccc
Confidence               0                     00  123666789999999988754

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.40  E-value=1.3e-12  Score=104.67  Aligned_cols=78  Identities=23%  Similarity=0.127  Sum_probs=59.2

Q ss_pred             eEEEEEEEeCCC---------ceeccceeccCCCCHHHHHHHHHHHHHcCccceec------------------ccc---
Q 030947           63 LEVLVISSQKGK---------GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED------------------QLA---  112 (168)
Q Consensus        63 ~~vLLv~r~~~~---------~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~------------------~~~---  112 (168)
                      .+|||+++.+.+         .|++|+|.+++||++.+||+||+.||||+.+....                  .+.   
T Consensus        62 ~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg~~~e~~~~fla~~~  141 (202)
T PRK10729         62 DEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPGGTSERSSIMVGEVD  141 (202)
T ss_pred             CEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCCcCceEEEEEEEEEc
Confidence            489999987542         49999999999999999999999999999875433                  000   


Q ss_pred             ---------ccCCCceeeEEEEeHhHHHhhcCChhHH
Q 030947          113 ---------EWPEKNVRSRKWMSVAEARKVCQHWWMK  140 (168)
Q Consensus       113 ---------~~~e~e~~~~~W~~~~e~~~~~~~~~~~  140 (168)
                               ..++.|..++.|++++++.+++....+.
T Consensus       142 ~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~  178 (202)
T PRK10729        142 ATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKID  178 (202)
T ss_pred             chhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCCCC
Confidence                     0122345578999999999987655443

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.39  E-value=1.4e-12  Score=100.13  Aligned_cols=88  Identities=16%  Similarity=0.151  Sum_probs=65.2

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceecc-ceeccCCCCHHHHHHHHHHHHHcCccceec-
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVED-  109 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~gEt~~~aA~REl~EEtGi~~~~~~-  109 (168)
                      .++..+++++++.+            ++|||.+|..     +|.|.+| ||+++.||  .+||.||++||||++..... 
T Consensus        25 ~~h~~v~v~v~~~~------------g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l   90 (158)
T TIGR02150        25 PLHRAFSVFLFNEE------------GQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPL   90 (158)
T ss_pred             CeEEEEEEEEEcCC------------CeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccce
Confidence            46778888888642            3899998864     3889997 89999999  49999999999999864321 


Q ss_pred             -------c-----------cccc----------CCCceeeEEEEeHhHHHhhcCChh
Q 030947          110 -------Q-----------LAEW----------PEKNVRSRKWMSVAEARKVCQHWW  138 (168)
Q Consensus       110 -------~-----------~~~~----------~e~e~~~~~W~~~~e~~~~~~~~~  138 (168)
                             .           ...|          ...|..++.|++++++.+++..+.
T Consensus        91 ~~~~~~~~~~~~~~g~~~~~~~f~~~~~~~~~~~~~Ev~~~~W~~~~el~~~~~~~~  147 (158)
T TIGR02150        91 TVLPRFSYRARDAWGEHELCPVFFARAPVPLNPNPEEVAEYRWVSLEELKEILKAPW  147 (158)
T ss_pred             EEcceEEEEEecCCCcEEEEEEEEEecCCcccCChhHeeeEEEeCHHHHHHHHhcCc
Confidence                   0           0000          122677899999999999875443

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.37  E-value=1.5e-12  Score=97.21  Aligned_cols=43  Identities=40%  Similarity=0.470  Sum_probs=38.2

Q ss_pred             ceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCcc
Q 030947           62 DLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTG  105 (168)
Q Consensus        62 ~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~  105 (168)
                      +.++|+.+... +.|.||||+++.||++.+||.||++||||+.+
T Consensus        13 ~~~ll~~r~~~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~   55 (126)
T cd04663          13 VLELLVFEHPL-AGFQIVKGTVEPGETPEAAALRELQEESGLPS   55 (126)
T ss_pred             eEEEEEEEcCC-CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence            35788887665 56999999999999999999999999999986

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.34  E-value=6e-12  Score=99.72  Aligned_cols=44  Identities=25%  Similarity=0.179  Sum_probs=40.8

Q ss_pred             CceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCc
Q 030947           61 EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT  104 (168)
Q Consensus        61 ~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~  104 (168)
                      +..+||++++...+.|.||||+++.||++.+||.||++||||++
T Consensus        47 ~~l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~   90 (186)
T cd03670          47 PILQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALNS   90 (186)
T ss_pred             CeeEEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHccc
Confidence            45799999999889999999999999999999999999999754

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.33  E-value=9.3e-12  Score=96.11  Aligned_cols=72  Identities=24%  Similarity=0.368  Sum_probs=54.2

Q ss_pred             EEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccccc----------------------CCCceee
Q 030947           64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEW----------------------PEKNVRS  121 (168)
Q Consensus        64 ~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~~~----------------------~e~e~~~  121 (168)
                      ++||+++.. ..|.+|||+++.||++.+||.||++||||+.+.....+..+                      +..+..+
T Consensus        36 ~~LL~~~~~-~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~~vf~A~~~~~~~~~e~~E  114 (156)
T TIGR02705        36 QWLLTEHKR-RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVKDVYFAEVSALESKDDYLE  114 (156)
T ss_pred             EEEEEEEcC-CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEEEEEEEEEeccccCCCcee
Confidence            789998775 45999999999999999999999999999987655411100                      1123344


Q ss_pred             EE-EEeHhHHHhhcCC
Q 030947          122 RK-WMSVAEARKVCQH  136 (168)
Q Consensus       122 ~~-W~~~~e~~~~~~~  136 (168)
                      .. +++++++++++..
T Consensus       115 ~~~~~~~~~~~~~~~~  130 (156)
T TIGR02705       115 TKGPVLLQEIPDIIKA  130 (156)
T ss_pred             eEeEEEHHHHHHHHhc
Confidence            55 7999999887643

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.32  E-value=9.3e-12  Score=97.22  Aligned_cols=96  Identities=17%  Similarity=0.089  Sum_probs=68.4

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCce-eccceeccCCCCHHHHHHHHHHHHHcCccceec-
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVED-  109 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W-~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~-  109 (168)
                      -++..+.+.+|..+.  +      +..++|+.||..     +|.| .+|+|+++.||++.+||+||++||||+++.... 
T Consensus        30 ~~h~~v~~~~~~~~~--~------~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~  101 (180)
T cd03676          30 LVTYGVHLNGYVRDE--D------GGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQ  101 (180)
T ss_pred             ceEEEEEEEEEEEcC--C------CCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhh
Confidence            456677766665431  0      136888888873     4889 599999999999999999999999999864211 


Q ss_pred             ---------c------------ccc----c--------CCCceeeEEEEeHhHHHhhcCChhHH
Q 030947          110 ---------Q------------LAE----W--------PEKNVRSRKWMSVAEARKVCQHWWMK  140 (168)
Q Consensus       110 ---------~------------~~~----~--------~e~e~~~~~W~~~~e~~~~~~~~~~~  140 (168)
                               .            ...    .        .+.|..++.|++++|+.+++....+.
T Consensus       102 l~~~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l~~g~~~  165 (180)
T cd03676         102 LKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRALKEGEFK  165 (180)
T ss_pred             ceeccEEEEEEEcCCCcEeeeEEEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHHHcCCCC
Confidence                     0            000    0        12366789999999999988665443

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.32  E-value=1e-11  Score=91.73  Aligned_cols=43  Identities=35%  Similarity=0.412  Sum_probs=37.3

Q ss_pred             EEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccc
Q 030947           64 EVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI  106 (168)
Q Consensus        64 ~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~  106 (168)
                      ++||++|+.   .+.|.||||+++.||++.+||.||++||||+++.
T Consensus        16 ~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~   61 (118)
T cd04674          16 GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVD   61 (118)
T ss_pred             CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCccc
Confidence            366666653   3789999999999999999999999999999864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.28  E-value=1.9e-11  Score=97.15  Aligned_cols=89  Identities=16%  Similarity=0.041  Sum_probs=63.9

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeCCC----------ceeccceeccCCCCHHHHHHHHHHHHHcCccceec
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGK----------GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED  109 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~----------~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~  109 (168)
                      ..++++++..           ++.+|||+++.+.+          .|++|+|.++.| ++.+||+||+.||||+.+..+.
T Consensus        46 ~~v~Vl~~~~-----------~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~  113 (191)
T PRK15009         46 NGATILLYNA-----------KKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVR  113 (191)
T ss_pred             CEEEEEEEEC-----------CCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEE
Confidence            3566666643           23489999987543          399999999965 6999999999999999875444


Q ss_pred             cc------------------c-----------ccCCCceeeEEEEeHhHHHhhcCChhHH
Q 030947          110 QL------------------A-----------EWPEKNVRSRKWMSVAEARKVCQHWWMK  140 (168)
Q Consensus       110 ~~------------------~-----------~~~e~e~~~~~W~~~~e~~~~~~~~~~~  140 (168)
                      .+                  .           ...+.|.-++.|++++++.+++....+.
T Consensus       114 ~l~~~~~spG~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~i~  173 (191)
T PRK15009        114 KLFELYMSPGGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIR  173 (191)
T ss_pred             EeeEEEcCCcccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCCCC
Confidence            00                  0           0012345578999999999998665554

>PRK08999 hypothetical protein; Provisional

Probab=99.28  E-value=2.1e-11  Score=102.56  Aligned_cols=84  Identities=21%  Similarity=0.261  Sum_probs=62.1

Q ss_pred             eEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------------------ccc----C
Q 030947           63 LEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-------------------AEW----P  115 (168)
Q Consensus        63 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-------------------~~~----~  115 (168)
                      .+|||.+|..    .|.|.||||+++.||++.+||.||++||||+.+.....+                   ..+    .
T Consensus        17 ~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~y~~~~~~~~~~   96 (312)
T PRK08999         17 GRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDVRRVTAWQGEPH   96 (312)
T ss_pred             CeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEEEEEEEecCccc
Confidence            3799998864    378999999999999999999999999999985432200                   001    1


Q ss_pred             CCceeeEEEEeHhHHHhhcCChhHHHHHHHH
Q 030947          116 EKNVRSRKWMSVAEARKVCQHWWMKEALDRL  146 (168)
Q Consensus       116 e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~  146 (168)
                      ..+...++|++++++.++...+.++.+++.+
T Consensus        97 ~~e~~~~~Wv~~~el~~~~~~~~~~~i~~~l  127 (312)
T PRK08999         97 GREGQPLAWVAPDELAVYPFPPANQPIVRAL  127 (312)
T ss_pred             CccCCccEEecHHHcccCCCCcchHHHHHHh
Confidence            1145567999999999876666666555543

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=99.28  E-value=2e-11  Score=90.72  Aligned_cols=109  Identities=27%  Similarity=0.346  Sum_probs=81.2

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEe-------CCCceeccceeccCCCCHHHHHHHHHHHHHcCccceec-
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQ-------KGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED-  109 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~-------~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~-  109 (168)
                      .+..+|+++|+..   .      +...|||++..       +.|.|++|+|-...||.+..||+||+-||+||-++-.. 
T Consensus         2 pK~SAGvLlYR~~---a------G~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~   72 (161)
T COG4119           2 PKLSAGVLLYRAR---A------GVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRI   72 (161)
T ss_pred             CcccceeEEEEec---C------CCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchh
Confidence            3567899999986   4      34589999875       34789999999999999999999999999999753111 


Q ss_pred             -------------------------------cccccCCC--------ceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHH
Q 030947          110 -------------------------------QLAEWPEK--------NVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL  150 (168)
Q Consensus       110 -------------------------------~~~~~~e~--------e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~  150 (168)
                                                     +...||..        |.+.+.||++.++...+... .+..+..+.++.
T Consensus        73 ~lG~~kQ~GGKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~Kil~g-QRpfldrL~a~~  151 (161)
T COG4119          73 DLGSLKQSGGKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEARTKILKG-QRPFLDRLMAHA  151 (161)
T ss_pred             hhhhhccCCCcEEEEEeeeeeeehhhhhcceeeeecCCCCCccccCcccccccceecHHHHhHHhhc-cchHHHHHHHHh
Confidence                                           11234432        66788999999998877543 456777777765


Q ss_pred             hcccCC
Q 030947          151 TSQQLH  156 (168)
Q Consensus       151 ~~~~~~  156 (168)
                      ..+...
T Consensus       152 ~ag~s~  157 (161)
T COG4119         152 VAGLSE  157 (161)
T ss_pred             cccccc
Confidence            555443

>PLN02709 nudix hydrolase

Probab=99.27  E-value=2.7e-11  Score=98.29  Aligned_cols=46  Identities=24%  Similarity=0.353  Sum_probs=40.0

Q ss_pred             CceEEEEEEEeC-----CCceeccceeccCC-CCHHHHHHHHHHHHHcCccc
Q 030947           61 EDLEVLVISSQK-----GKGMLFPKGGWEID-ESIQEAALRETIEEAGVTGI  106 (168)
Q Consensus        61 ~~~~vLLv~r~~-----~~~W~lPgG~ve~g-Et~~~aA~REl~EEtGi~~~  106 (168)
                      ++.+|||++|..     .|.|+||||+++++ +++.+||+||+.||+|+...
T Consensus        49 ~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~  100 (222)
T PLN02709         49 NELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPS  100 (222)
T ss_pred             CceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCch
Confidence            456899999974     48999999999997 57899999999999999764

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.24  E-value=7.1e-11  Score=85.24  Aligned_cols=44  Identities=34%  Similarity=0.315  Sum_probs=40.6

Q ss_pred             eEEEEEEEeCCC-ceeccceeccCCCCHHH-HHHHHHHHHHcCccc
Q 030947           63 LEVLVISSQKGK-GMLFPKGGWEIDESIQE-AALRETIEEAGVTGI  106 (168)
Q Consensus        63 ~~vLLv~r~~~~-~W~lPgG~ve~gEt~~~-aA~REl~EEtGi~~~  106 (168)
                      .++|+.+++..+ .|.||||+++.||++.+ ||+||++||||+.+.
T Consensus        24 ~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~   69 (161)
T COG0494          24 GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVK   69 (161)
T ss_pred             CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeee
Confidence            589999998876 99999999999999988 999999999999876

>PLN03143 nudix hydrolase; Provisional

Probab=99.07  E-value=2.9e-09  Score=89.67  Aligned_cols=45  Identities=18%  Similarity=0.192  Sum_probs=37.8

Q ss_pred             CceEEEEEEEeCC----CceeccceeccC-CCCHHHHHHHHHHHHHcCcc
Q 030947           61 EDLEVLVISSQKG----KGMLFPKGGWEI-DESIQEAALRETIEEAGVTG  105 (168)
Q Consensus        61 ~~~~vLLv~r~~~----~~W~lPgG~ve~-gEt~~~aA~REl~EEtGi~~  105 (168)
                      ++.+|||+++.+.    ..|+||+|.+|. +|++.+||+||++||||+.+
T Consensus       141 ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~  190 (291)
T PLN03143        141 GETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKL  190 (291)
T ss_pred             CCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCcc
Confidence            3445889888752    469999999997 48999999999999999964

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.03  E-value=3.6e-10  Score=94.12  Aligned_cols=72  Identities=22%  Similarity=0.325  Sum_probs=57.0

Q ss_pred             EEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--ccc---------------------CCCc
Q 030947           64 EVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--AEW---------------------PEKN  118 (168)
Q Consensus        64 ~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--~~~---------------------~e~e  118 (168)
                      ++||.++.+  .|.+++-.|+||+|||+++|+.||++||+||++...+.+  ..|                     ++.|
T Consensus       156 ~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQPWPfP~SLMigf~aey~sgeI~~d~~E  235 (279)
T COG2816         156 EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQPWPFPHSLMLGFMAEYDSGEITPDEGE  235 (279)
T ss_pred             ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEeccCCCCchhhhhhheeeeccccccCCcch
Confidence            578877764  589999999999999999999999999999998766621  111                     2336


Q ss_pred             eeeEEEEeHhHHHhhcC
Q 030947          119 VRSRKWMSVAEARKVCQ  135 (168)
Q Consensus       119 ~~~~~W~~~~e~~~~~~  135 (168)
                      ..+++||+.+|+...+.
T Consensus       236 leda~WFs~~evl~~L~  252 (279)
T COG2816         236 LEDARWFSRDEVLPALP  252 (279)
T ss_pred             hhhccccCHhHHhhhcC
Confidence            77899999999655543

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.02  E-value=2.8e-10  Score=95.75  Aligned_cols=75  Identities=25%  Similarity=0.349  Sum_probs=56.8

Q ss_pred             CceEEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--cccC---------------------
Q 030947           61 EDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--AEWP---------------------  115 (168)
Q Consensus        61 ~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--~~~~---------------------  115 (168)
                      +..+.||.|.++  +|.|..+.|++|+|||+++||+||++||||+++......  ..||                     
T Consensus       198 d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP~~p~SLMIgc~ala~~~~~I~  277 (345)
T KOG3084|consen  198 DGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWPLMPQSLMIGCLALAKLNGKIS  277 (345)
T ss_pred             CCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecCCCCCCchHHHHHHHHHHhhCCccc
Confidence            334677776554  489999999999999999999999999999998755511  2232                     


Q ss_pred             ---CCceeeEEEEeHhHHHhhcC
Q 030947          116 ---EKNVRSRKWMSVAEARKVCQ  135 (168)
Q Consensus       116 ---e~e~~~~~W~~~~e~~~~~~  135 (168)
                         +.|..+.+||+.+|+.+.+.
T Consensus       278 vd~dlEleDaqwF~r~ev~~aL~  300 (345)
T KOG3084|consen  278 VDKDLELEDAQWFDREEVKSALT  300 (345)
T ss_pred             cCcchhhhhcccccHHHHHHHHH
Confidence               11455789999999877654

>PLN02791 Nudix hydrolase homolog

Probab=98.84  E-value=2.4e-08  Score=93.40  Aligned_cols=58  Identities=19%  Similarity=0.122  Sum_probs=48.9

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceec-cceeccCCCCHHHHHHHHHHHHHcCcc
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTG  105 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~l-PgG~ve~gEt~~~aA~REl~EEtGi~~  105 (168)
                      .++.++.+.+|+.+           +.++||.+|..     +|.|.+ |||++..||++.+||.||++||+||..
T Consensus        30 l~HrAvhVwIfn~~-----------~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l   93 (770)
T PLN02791         30 DYHRAVHVWIYSES-----------TQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIIL   93 (770)
T ss_pred             CceEEEEEEEEECC-----------CCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCC
Confidence            46788888888742           24789988864     589999 699999999999999999999999973

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=98.80  E-value=2.2e-08  Score=82.64  Aligned_cols=57  Identities=16%  Similarity=0.116  Sum_probs=41.8

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceecc-ceeccCC----C----------C---HHHHH
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFP-KGGWEID----E----------S---IQEAA   93 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~g----E----------t---~~~aA   93 (168)
                      .++.++.+++|+.+            +++||.||..     +|.|... +|++..|    |          +   ..+||
T Consensus        54 l~Hra~~v~i~n~~------------g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA  121 (247)
T PLN02552         54 LLHRAFSVFLFNSK------------YELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAA  121 (247)
T ss_pred             ceEEEEEEEEEcCC------------CeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHH
Confidence            57788899998743            3899999874     3689555 3444433    2          1   68999


Q ss_pred             HHHHHHHHcCcc
Q 030947           94 LRETIEEAGVTG  105 (168)
Q Consensus        94 ~REl~EEtGi~~  105 (168)
                      .||++||+||..
T Consensus       122 ~REL~EElGI~~  133 (247)
T PLN02552        122 QRKLLHELGIPA  133 (247)
T ss_pred             HhHHHHHhCCCc
Confidence            999999999984

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=98.67  E-value=2.4e-07  Score=73.72  Aligned_cols=49  Identities=24%  Similarity=0.324  Sum_probs=42.0

Q ss_pred             CceEEEEEEEeCC--C--ceeccceeccCCCCHHHHHHHHHHHHHcCccceec
Q 030947           61 EDLEVLVISSQKG--K--GMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED  109 (168)
Q Consensus        61 ~~~~vLLv~r~~~--~--~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~  109 (168)
                      ++..++|+++.+.  |  --++|.|-++.||++..||.||++||||+.+....
T Consensus        86 G~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~  138 (225)
T KOG3041|consen   86 GKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDM  138 (225)
T ss_pred             CcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeee
Confidence            5678999998764  3  47899999999999999999999999999865444

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=98.57  E-value=2.6e-07  Score=75.17  Aligned_cols=72  Identities=28%  Similarity=0.387  Sum_probs=54.2

Q ss_pred             CceEEEEEEEeC-----CCceeccceeccCC-CCHHHHHHHHHHHHHcCccceecc---c-------------------c
Q 030947           61 EDLEVLVISSQK-----GKGMLFPKGGWEID-ESIQEAALRETIEEAGVTGIVEDQ---L-------------------A  112 (168)
Q Consensus        61 ~~~~vLLv~r~~-----~~~W~lPgG~ve~g-Et~~~aA~REl~EEtGi~~~~~~~---~-------------------~  112 (168)
                      ++..|||.+|..     .|.-+||||+.+.+ ++-.++|.||.+||+|++......   +                   .
T Consensus        56 ~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~~v~p~v~~l~~  135 (246)
T KOG3069|consen   56 GELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGWSVFPVVGFLSD  135 (246)
T ss_pred             CceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccCcccceeEEEEec
Confidence            567899999873     48999999999975 467889999999999998643330   0                   0


Q ss_pred             c-------cCCCceeeEEEEeHhHHHh
Q 030947          113 E-------WPEKNVRSRKWMSVAEARK  132 (168)
Q Consensus       113 ~-------~~e~e~~~~~W~~~~e~~~  132 (168)
                      .       ....|...+.|++++++..
T Consensus       136 ~~~l~~~~ln~gEv~~~F~VPL~~ll~  162 (246)
T KOG3069|consen  136 KKILPSLRLNSGEVESAFWVPLTDLLL  162 (246)
T ss_pred             ccccccccCCchheeeeeeeeHHHHhh
Confidence            0       0123677899999999865

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.56  E-value=1.1e-07  Score=79.81  Aligned_cols=72  Identities=28%  Similarity=0.392  Sum_probs=54.9

Q ss_pred             eEEEEEEEeC-----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-----------------------cc-
Q 030947           63 LEVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-----------------------AE-  113 (168)
Q Consensus        63 ~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-----------------------~~-  113 (168)
                      .+||+++..+     .+.|-+|+|.++++|++.++|.||++||||++......+                       .. 
T Consensus       127 ~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVla~r~~H~~~~~~~ksd~f~~c~L~p~  206 (295)
T KOG0648|consen  127 KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVLAFRRAHNATFGLIKSDMFFTCELRPR  206 (295)
T ss_pred             ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhHHHHHhhhcchhhcccccceeEEEeecc
Confidence            5899998643     488999999999999999999999999999976544400                       00 


Q ss_pred             -----cCCCceeeEEEEeHhHHHhhc
Q 030947          114 -----WPEKNVRSRKWMSVAEARKVC  134 (168)
Q Consensus       114 -----~~e~e~~~~~W~~~~e~~~~~  134 (168)
                           .++.++..+.|+++++.....
T Consensus       207 s~~i~~~~~ei~~~~Wmp~~e~v~qp  232 (295)
T KOG0648|consen  207 SLDITKCKREIEAAAWMPIEEYVSQP  232 (295)
T ss_pred             ccccchhHHHHHHHhcccHHHhhccc
Confidence                 022255567999999887765

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=98.37  E-value=4.4e-06  Score=59.41  Aligned_cols=80  Identities=19%  Similarity=0.241  Sum_probs=54.9

Q ss_pred             EEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCcc----ceec-------ccccc----CC--CceeeE
Q 030947           64 EVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTG----IVED-------QLAEW----PE--KNVRSR  122 (168)
Q Consensus        64 ~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~----~~~~-------~~~~~----~e--~e~~~~  122 (168)
                      ++||.+|..    .|.|+||+|.++.+++..++..|++.++.++..    .+..       .+..|    ..  .+..+.
T Consensus        15 ~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~fth~~~~~~~~~~~~~~~~~~~~~~   94 (118)
T cd03431          15 RVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRLSLEPLGTVKHTFTHFRLTLHVYLARLEGDLLAPDEG   94 (118)
T ss_pred             eEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCcccccceeEEEecCCeEEEEEEEEEEEeCCCcCcccc
Confidence            799999864    378999999999999999999999999875211    1111       11111    11  244567


Q ss_pred             EEEeHhHHHhhcCChhHHHHH
Q 030947          123 KWMSVAEARKVCQHWWMKEAL  143 (168)
Q Consensus       123 ~W~~~~e~~~~~~~~~~~~~l  143 (168)
                      .|++++++..+.....++.++
T Consensus        95 ~W~~~eel~~~~~p~~~~kil  115 (118)
T cd03431          95 RWVPLEELDEYALPTVMRKIL  115 (118)
T ss_pred             EEccHHHHhhCCCCHHHHHHH
Confidence            999999999876555444444

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=97.99  E-value=6.3e-06  Score=66.74  Aligned_cols=39  Identities=26%  Similarity=0.283  Sum_probs=37.2

Q ss_pred             eEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHH
Q 030947           63 LEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEA  101 (168)
Q Consensus        63 ~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEt  101 (168)
                      ++++.+++.+.+.|.+|||.+++||.+-.+.+||+.||+
T Consensus       139 le~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa  177 (275)
T KOG4195|consen  139 LEFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEA  177 (275)
T ss_pred             eEEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence            688999999999999999999999999999999999995

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=97.44  E-value=3.7e-05  Score=65.41  Aligned_cols=82  Identities=28%  Similarity=0.355  Sum_probs=62.4

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceec--------
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED--------  109 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~--------  109 (168)
                      ..+..|++++...           --++||++......|.||.|++..+|+-.+||.||+.||||.+..-.-        
T Consensus        81 ~iPv~ga~ild~~-----------~sr~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~Ie~  149 (348)
T KOG2937|consen   81 RIPVRGAIILDEK-----------RSRCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEGIET  149 (348)
T ss_pred             CCCCchHhhhhhh-----------hhhhheeeceecccccccCccccccchhhhcchhcccchhhcCHHHHhccccCccc
Confidence            3456777777643           347999998888789999999999999999999999999999863111        


Q ss_pred             ----cc-------------cccC--CCceeeEEEEeHhHH
Q 030947          110 ----QL-------------AEWP--EKNVRSRKWMSVAEA  130 (168)
Q Consensus       110 ----~~-------------~~~~--e~e~~~~~W~~~~e~  130 (168)
                          ++             ...+  -.|+..+.|+.++++
T Consensus       150 nI~dq~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l  189 (348)
T KOG2937|consen  150 NIRDQLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHL  189 (348)
T ss_pred             chhhceeeeeeeccceeeeecchhhhccccceeeeehhhh
Confidence                00             0001  227788999999998

>PLN02839 nudix hydrolase

Probab=97.42  E-value=0.00036  Score=60.57  Aligned_cols=76  Identities=22%  Similarity=0.240  Sum_probs=54.1

Q ss_pred             CceEEEEEEEeC-----CCceec-cceeccCCCCHHHHHHHHHHHHHcCccceec---------c---------------
Q 030947           61 EDLEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVED---------Q---------------  110 (168)
Q Consensus        61 ~~~~vLLv~r~~-----~~~W~l-PgG~ve~gEt~~~aA~REl~EEtGi~~~~~~---------~---------------  110 (168)
                      ++.++.+-||..     +|.|.- .+|++..||++.++++||.+||+|+.....+         .               
T Consensus       216 g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~  295 (372)
T PLN02839        216 GQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFC  295 (372)
T ss_pred             CCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEE
Confidence            445666666652     366653 4899999999999999999999999754222         0               


Q ss_pred             --cc---cc----CCCceeeEEEEeHhHHHhhcCC
Q 030947          111 --LA---EW----PEKNVRSRKWMSVAEARKVCQH  136 (168)
Q Consensus       111 --~~---~~----~e~e~~~~~W~~~~e~~~~~~~  136 (168)
                        +.   .+    .+.|..++.+++++|+.+.+..
T Consensus       296 YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~l~~  330 (372)
T PLN02839        296 YDLELPQDFVPKNQDGEVESFKLIPVAQVANVIRK  330 (372)
T ss_pred             eeeecCCccccCCCccceeEEEEecHHHHHHHHHc
Confidence              00   01    2337788999999999887643

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=97.12  E-value=0.0011  Score=52.68  Aligned_cols=70  Identities=21%  Similarity=0.230  Sum_probs=46.0

Q ss_pred             hccccccccccC-CceeEEEEE-EEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHc
Q 030947           25 SRTGRHLQRYQK-GRRQVVGCI-PYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG  102 (168)
Q Consensus        25 ~~~g~~~~r~~~-~~r~~~g~v-~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtG  102 (168)
                      ++..+-...|.+ +-|-+|.+| +++..          +..+|||++... ..|.||||.+..||+..++.+|-+.+-.|
T Consensus        28 ~rl~rl~~~y~~~GmRrsVe~Vllvh~h----------~~PHvLLLq~~~-~~fkLPGg~l~~gE~e~~gLkrkL~~~l~   96 (188)
T PF13869_consen   28 ARLQRLKENYEKEGMRRSVEGVLLVHEH----------GHPHVLLLQIGN-TFFKLPGGRLRPGEDEIEGLKRKLTEKLS   96 (188)
T ss_dssp             HHHHHHHHHHHHHSSEEEEEEEEEEEET----------TEEEEEEEEETT-TEEE-SEEE--TT--HHHHHHHHHHHHHB
T ss_pred             HHHHHHHHHHHHhCCceEEEEEEEEecC----------CCcEEEEEeccC-ccccCCccEeCCCCChhHHHHHHHHHHcC
Confidence            344444445555 545555554 45443          667999999544 48999999999999999999999999998


Q ss_pred             Ccc
Q 030947          103 VTG  105 (168)
Q Consensus       103 i~~  105 (168)
                      ...
T Consensus        97 ~~~   99 (188)
T PF13869_consen   97 PED   99 (188)
T ss_dssp             -SS
T ss_pred             CCc
Confidence            864

...

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=96.73  E-value=0.0022  Score=50.33  Aligned_cols=89  Identities=15%  Similarity=0.063  Sum_probs=62.7

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceecc-ceeccCCCCHHHHHHHHHHHHHcCccceec---
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVED---  109 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~gEt~~~aA~REl~EEtGi~~~~~~---  109 (168)
                      +....+.+|+.+            +++||.||..     ++.|.=- -||--+||+..+||+|-+.+|.||......   
T Consensus        33 HrAFS~~lFne~------------g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~  100 (185)
T COG1443          33 HRAFSSFLFNER------------GQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLE  100 (185)
T ss_pred             HhhhheeEECCC------------CceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccc
Confidence            567788898754            3778877763     3556432 456668999999999999999999876322   


Q ss_pred             cc--------------------------ccc---CCCceeeEEEEeHhHHHhhcCChhH
Q 030947          110 QL--------------------------AEW---PEKNVRSRKWMSVAEARKVCQHWWM  139 (168)
Q Consensus       110 ~~--------------------------~~~---~e~e~~~~~W~~~~e~~~~~~~~~~  139 (168)
                      .+                          ...   ...|..+++|++++++.+++.++..
T Consensus       101 il~rf~YrA~~~~~~~E~Eic~V~~~~~~~~~~~npdEV~~~~wv~~e~l~~~~~~~~~  159 (185)
T COG1443         101 ILPRFRYRAADPDGIVENEICPVLAARLDSALDPNPDEVMDYRWVSPEDLKEMVDATPW  159 (185)
T ss_pred             cccceEEeccCCCCcceeeeeeEEEEeecCCCCCChHHhhheeccCHHHHHHhhcCCce
Confidence            00                          000   1126778999999999998766444

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=96.48  E-value=0.0056  Score=43.85  Aligned_cols=80  Identities=14%  Similarity=0.096  Sum_probs=39.9

Q ss_pred             ceEEEEEEEeCC----CceeccceeccCCCCHHHHHHHHHHHHHcCccceec-------cc-------ccc----CCC--
Q 030947           62 DLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED-------QL-------AEW----PEK--  117 (168)
Q Consensus        62 ~~~vLLv~r~~~----~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~-------~~-------~~~----~e~--  117 (168)
                      ++++||.||..+    |.|+||.--.+...+ .+.+.+.+.+..|+......       .+       ..|    ...  
T Consensus         8 ~~~~Ll~kRp~~gll~GLwefP~~e~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~~~~~~~~   86 (114)
T PF14815_consen    8 QGRVLLEKRPEKGLLAGLWEFPLIESDEEDD-EEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEVEVSADPP   86 (114)
T ss_dssp             TSEEEEEE--SSSTTTT-EE--EEE-SSS-C-HHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEEEEE-SS-
T ss_pred             CCEEEEEECCCCChhhcCcccCEeCccCCCC-HHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEEEecCCCC
Confidence            448999998863    789999987764333 55555556566676543322       00       001    111  


Q ss_pred             -ceeeEEEEeHhHHHhhcCChhHHHH
Q 030947          118 -NVRSRKWMSVAEARKVCQHWWMKEA  142 (168)
Q Consensus       118 -e~~~~~W~~~~e~~~~~~~~~~~~~  142 (168)
                       ......|++++++.++.....++.+
T Consensus        87 ~~~~~~~W~~~~~l~~~~~p~~~~ki  112 (114)
T PF14815_consen   87 AEPEEGQWVSLEELDQYPLPTPMRKI  112 (114)
T ss_dssp             ---TTEEEEEGGGGGGS---HHHHHH
T ss_pred             CCCCCcEEEEHHHHhhCCCCHHHHHH
Confidence             2467899999999986655544433

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=94.84  E-value=0.059  Score=42.40  Aligned_cols=54  Identities=22%  Similarity=0.227  Sum_probs=43.5

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHc
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAG  102 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtG  102 (168)
                      .|-+-|+++++..          +-.+|||++-.. -.+.+|||.+++||+-.+..+|-+-|-.|
T Consensus        69 RrsvegvlivheH----------~lPHvLLLQig~-tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg  122 (221)
T KOG1689|consen   69 RRSVEGVLIVHEH----------NLPHVLLLQIGN-TFFKLPGGRLRPGEDEADGLKRLLTESLG  122 (221)
T ss_pred             hheeeeeEEEeec----------CCCeEEEEeeCC-EEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence            3455566666654          556899998654 47999999999999999999999999999

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=93.89  E-value=0.74  Score=36.09  Aligned_cols=69  Identities=28%  Similarity=0.283  Sum_probs=46.3

Q ss_pred             EEEEEEEeCC-------Cceecc-ceeccCCC---CHHHH----HHHHHHHHHcCccceec------------------c
Q 030947           64 EVLVISSQKG-------KGMLFP-KGGWEIDE---SIQEA----ALRETIEEAGVTGIVED------------------Q  110 (168)
Q Consensus        64 ~vLLv~r~~~-------~~W~lP-gG~ve~gE---t~~~a----A~REl~EEtGi~~~~~~------------------~  110 (168)
                      +||+..|..+       +.+++- |||+..++   +..+.    +.||+.||.++.-....                  +
T Consensus        73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd~neVgkVH  152 (203)
T COG4112          73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDDTNEVGKVH  152 (203)
T ss_pred             EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCCCcccceEE
Confidence            8999988642       456665 89998653   33332    78999999999732222                  0


Q ss_pred             --------cc----ccCCCceeeEEEEeHhHHHh
Q 030947          111 --------LA----EWPEKNVRSRKWMSVAEARK  132 (168)
Q Consensus       111 --------~~----~~~e~e~~~~~W~~~~e~~~  132 (168)
                              ..    ...+.+..+.+|+...++.+
T Consensus       153 iG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~  186 (203)
T COG4112         153 IGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEK  186 (203)
T ss_pred             EEEEEEeeccccceeeeecceeeeeeeeHHHHHH
Confidence                    00    11344667889999999988

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=91.27  E-value=0.93  Score=37.69  Aligned_cols=42  Identities=17%  Similarity=0.281  Sum_probs=35.6

Q ss_pred             eEEEEEEEe--CCCceeccceec-cCCCCHHHHHHHHHHHHHcCc
Q 030947           63 LEVLVISSQ--KGKGMLFPKGGW-EIDESIQEAALRETIEEAGVT  104 (168)
Q Consensus        63 ~~vLLv~r~--~~~~W~lPgG~v-e~gEt~~~aA~REl~EEtGi~  104 (168)
                      .-+||+++.  ..+.|.||-+.. +.++++..+|.|+++.-.|=.
T Consensus       139 ~LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~  183 (263)
T KOG4548|consen  139 KLYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGEN  183 (263)
T ss_pred             eEEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcch
Confidence            458888855  247899999999 899999999999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
2fvv_A	194	Human Diphosphoinositol Polyphosphate Phosphohydrol		8e-04

>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1 Length = 194

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 36/126 (28%)
Query: 37  GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAALR 95
           G ++   C+ +R          +E + EVL++SS +     + P GG E +E    AA+R
Sbjct: 38  GYKKRAACLCFR----------SESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVR 87
Query: 96  ETIEEAGV-------TGIVEDQ----------------LAEWPEK-NV-RSRKWMSVAEA 130
           E  EEAGV        GI E+Q                L +W +  N+ R R+W  + +A
Sbjct: 88  EVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDA 147
Query: 131 RKVCQH 136
            KV Q+
Sbjct: 148 IKVLQY 153

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	2e-28
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	5e-12
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	2e-10
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	2e-09
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	7e-09
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	8e-09
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	1e-08
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	2e-08
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	1e-07
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	6e-07
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	2e-06
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	2e-06
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	2e-06
3exq_A	161	Nudix family hydrolase; protein structure initiati	3e-06
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	4e-06
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	6e-06
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	7e-06
2b06_A	155	MUTT/nudix family protein; structural genomics, P	1e-05
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	1e-05
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	3e-05
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	4e-05
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	5e-05
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	8e-05
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	8e-05
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	8e-05
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	1e-04
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	1e-04
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	1e-04
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	1e-04
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	1e-04
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	2e-04
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	2e-04
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	3e-04
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	3e-04
3f13_A	163	Putative nudix hydrolase family member; structural	4e-04
2fb1_A	226	Conserved hypothetical protein; structural genomic	7e-04
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	7e-04
3grn_A	153	MUTT related protein; structural genomics, hydrola	8e-04

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score =  103 bits (257), Expect = 2e-28
 Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 35/158 (22%)

Query: 11  VSLVTPENVVGNLVSRTGRHLQRY-QKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVIS 69
           V L T      +++       + Y   G ++   C+ +R +          E+  +LV S
Sbjct: 11  VDLGTENLYFQSMMKLKSNQTRTYDGDGYKKRAACLCFRSE---------SEEEVLLVSS 61

Query: 70  SQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTG-----------------------I 106
           S+     + P GG E +E    AA+RE  EEAGV G                       I
Sbjct: 62  SRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLI 121

Query: 107 VEDQLAEWPEKN--VRSRKWMSVAEARKVCQHWWMKEA 142
           V + L +W +     R R+W  + +A KV Q+    +A
Sbjct: 122 VTEVLEDWEDSVNIGRKREWFKIEDAIKVLQYHKPVQA 159

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 59.4 bits (144), Expect = 5e-12
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 34/143 (23%)

Query: 43  GCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAALRETIEEA 101
           G I +R   +     ++   +E L++ +  G      PKG  E  E   E ALR T EEA
Sbjct: 12  GLIIFRRCLI---PKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEA 68

Query: 102 GVTGIVEDQLAEWPE----------KNV--------------------RSRKWMSVAEAR 131
           G+       +  +            K V                    ++ +W+ + EA 
Sbjct: 69  GIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEAC 128

Query: 132 KVCQHWWMKEALDRLVMRLTSQQ 154
           ++ Q   MK AL      L S +
Sbjct: 129 QLAQFKEMKAALQEGHQFLCSIE 151

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 57.2 bits (137), Expect = 2e-10
 Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 16/117 (13%)

Query: 43  GCIPYRYKCVKQSL-----------DINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQE 91
           G I +R+K                     + +EV ++   K     +PKG  E +E+ + 
Sbjct: 7   GGIVWRWKAGSDIANDPAIASSKSAQEQLDSIEVCIVHRPKYDDWSWPKGKLEQNETHRH 66

Query: 92  AALRETIEEAGVTGIVEDQLAE----WPEKNVRSRKWMSVAEARKVCQHWWMKEALD 144
           AA+RE  EE G    +   L E      E+  ++R         K    +WM + + 
Sbjct: 67  AAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHT-LYWMAQPIS 122

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 51.1 bits (122), Expect = 7e-09
 Identities = 26/132 (19%), Positives = 42/132 (31%), Gaps = 34/132 (25%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA----E 113
             E + +  V+         F  GG E +E+I E A RE+IEE  +   V+         
Sbjct: 15  KTEANYQFGVLHRTDADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHAS 74

Query: 114 WPEKNVRSR------------------------------KWMSVAEARKVCQHWWMKEAL 143
            P  +                                  +W+S   A ++ +    K AL
Sbjct: 75  IPNFHFSFNKPYVVPEYCFAIDLTSCSYQVTLSLEHSELRWVSYESAIQLLEWDSNKTAL 134

Query: 144 DRLVMRLTSQQL 155
             L  RL +  +
Sbjct: 135 YELNERLKNNDM 146

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 52.3 bits (125), Expect = 8e-09
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 58  INEEDLEVLVISSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPE 116
           ++    + +++   K      FPKG  + DES  + A+RE  EE G          E+ +
Sbjct: 109 LDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFID 168

Query: 117 KNVRSRK 123
             +R + 
Sbjct: 169 MTIRGQN 175

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 39/134 (29%)

Query: 42  VGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGML-FPKGGWEIDESIQEAALRETIEE 100
            G + YR              +E L++ +         PKG  +  E   +AA+RET EE
Sbjct: 6   AGLVIYRK---------LAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEE 56

Query: 101 AGVTG---IVEDQLAEWPEKNVRSR--------------------------KWMSVAEAR 131
           A +T     + +   E      + +                          KW  + +A 
Sbjct: 57  ANITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAI 116

Query: 132 KVCQHWWMKEALDR 145
           K+  +  M   L +
Sbjct: 117 KIADYAEMGSLLRK 130

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 25/114 (21%)

Query: 61  EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAE------- 113
              EVL++  + G   +FPKG  E  ES++EAA+RE  EE GV   V   L         
Sbjct: 12  AKREVLLLRDRMGF-WVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPK 70

Query: 114 -------W----------PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL 150
                  W           E+ +    W S  EAR +         L+  + RL
Sbjct: 71  GVEREVHWFLMRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERL 124

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 47.1 bits (112), Expect = 1e-07
 Identities = 15/66 (22%), Positives = 30/66 (45%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPEK 117
            NE   ++L++   +     FP+G    DE+  +  +RE  EE G          ++ E+
Sbjct: 12  FNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIER 71

Query: 118 NVRSRK 123
           N++ + 
Sbjct: 72  NIQGKN 77

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 58  INEEDLEVLVISSQKGKGML---FPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA 112
              E  EVL+I   K +       P G  E  E+I EA  RE  EEAG+    E  L+
Sbjct: 27  FLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLS 84

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 21/79 (26%)

Query: 41  VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGW-------EIDESIQEAA 93
               I   +          E    +++I  ++     +P  G        E+ E ++EAA
Sbjct: 11  ATDVIIRLWD--------GENFKGIVLI--ERK----YPPVGLALPGGFVEVGERVEEAA 56

Query: 94  LRETIEEAGVTGIVEDQLA 112
            RE  EE G+   +   + 
Sbjct: 57  AREMREETGLEVRLHKLMG 75

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 60  EEDLEVLVIS-SQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA--EWP 115
             + + LV+  +  GK +   P G  E DE++ EAA RE  EE G++   +  +   +W 
Sbjct: 13  HAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWI 72

Query: 116 EKNVRSR 122
             +    
Sbjct: 73  APDKTPF 79

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 67  VISSQKGKGMLFPKGGW-EIDESIQEAALRETIEEAGVTGIVEDQLA 112
           ++  Q+  G+    GGW ++D+S+++  ++E  EEAG+    +  +A
Sbjct: 83  ILLVQENDGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVA 129

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 58  INEEDLEVLVISSQKGKGML---FPKGGWEIDESIQEAALRETIEEAGVT 104
            + E   VLV             FP G  E+ E    AA+RE  EE G+ 
Sbjct: 18  TDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLR 67

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 43.8 bits (103), Expect = 4e-06
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 58  INEEDLEVLVI-SSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA 112
            +E   ++LV+    K K M  FP G  E +E I + A+RE  EE G+       L+
Sbjct: 34  FDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLS 90

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGW-EIDESIQEAALRETIEEAGVTGIVEDQLA 112
           + + +  + V     GK  L P GGW ++  +  E A +E  EE G        LA
Sbjct: 75  VFQNEKLLFVKEKSDGKWAL-P-GGWADVGYTPTEVAAKEVFEETGYEVDHFKLLA 128

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 42.8 bits (101), Expect = 7e-06
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 58  INEEDLEVLVISSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA 112
           I +   ++LV    K KG      G  +++ES ++A +RE  EE GV         
Sbjct: 26  IVQNH-KLLVT---KDKGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAF 77

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 58  INEEDLEVLVISSQKGKGML----FPKGGWEIDESIQEAALRETIEEAGVT 104
            + E   V++              FP G  E DE+  E+ +RE  EE G+T
Sbjct: 16  EDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLT 66

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT 104
              E+  ++++ +  G     P G  E  E+ +EA  RE +EE G++
Sbjct: 26  SKPENNTMVLVQAPNGA-YFLPGGEIEGTETKEEAIHREVLEELGIS 71

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 58  INEEDLEVLVISSQKGKGML---FPKGGWEIDESIQEAALRETIEEAGVT 104
           I ++D + L++        +    P G  E  ESI +A  RE +EE G +
Sbjct: 15  IEQDD-KYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHS 63

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 40.6 bits (95), Expect = 4e-05
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPEK 117
           + E   +VL++  ++    ++P G  E +E+  EA  RE  EE G+            ++
Sbjct: 8   LVENG-KVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDE 66

Query: 118 NVRSR 122
           N   R
Sbjct: 67  NAVER 71

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 73  GKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA--EWPEKN 118
            +G    P G  E +E++ + A RET+EEA     + +  A    P  +
Sbjct: 63  YRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSLPHIS 111

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 39.8 bits (93), Expect = 8e-05
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGW-------EIDESIQEAALRETIEEAGVTGIVEDQ 110
           +NE   ++L++  +   G     G W       E  E+ Q+AA+RE  EE G+       
Sbjct: 21  LNERG-DILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKF 79

Query: 111 LAEWPEKNVRSRKWMSVA 128
           L  +  +       +   
Sbjct: 80  LGAYLGRFPDGVLILRHV 97

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 39.9 bits (93), Expect = 8e-05
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 58  INEEDLEVLVI--SSQKGKGMLFPKGGW-EIDESIQEAALRETIEEAGVTGIVED 109
           +     E L+   +++  +G  F  GG  + DE+++ A  R T+ E G+   +  
Sbjct: 25  VENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITA 79

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 43/141 (30%)

Query: 59  NEEDLEVLVI--SSQKGKGMLFP-KGGW-------EIDESIQEAALRETIEEAGVTGIVE 108
            +  L +L+I  S    +G      G W       + +ES ++AA RE  EE  +T I  
Sbjct: 42  GKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPL 101

Query: 109 DQLAEW--PEKNVRSR---------------------------KWMSVAEARKVC---QH 136
                +  P ++ R                                 + EA ++     H
Sbjct: 102 IPFGVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAFDH 161

Query: 137 WWM-KEALDRLVMRLTSQQLH 156
             M K+A   +       + H
Sbjct: 162 LDMLKKAFSAITEEFLLTEGH 182

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 51  CVKQSLDINEEDLEVLVI--SSQKGKGML-FPKGGW-EIDESIQEAALRETIEEAGVTGI 106
            V    +   + L+VL+I       +     P GG+   +ES +++ LRET EE GV   
Sbjct: 44  MVLLCYNKEADQLKVLLIQRKGHPFRNSWALP-GGFVNRNESTEDSVLRETKEETGVVIS 102

Query: 107 VED--QLAEWPEKNVRSRKWM 125
            E+  QL  +   +   R W+
Sbjct: 103 QENIEQLHSFSRPDRDPRGWV 123

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 78  FPKGGWEIDESIQEAALRETIEEAGVT 104
            P G  E  ESI E   RE  EE G+T
Sbjct: 30  APGGKMEAGESILETVKREYWEETGIT 56

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 39/132 (29%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEW--- 114
           +N+E  + L+I         +  G  + ++   + A++E  EE GV          +   
Sbjct: 53  VNKERNKFLMIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALD 112

Query: 115 ----PEKNVRSR--------------------------------KWMSVAEARKVCQHWW 138
                    R +                                 W+   E  K C    
Sbjct: 113 VLTVNGHIKRGKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKYCSEPH 172

Query: 139 MKEALDRLVMRL 150
           M    ++L+ +L
Sbjct: 173 MIPIYEKLINKL 184

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 61  EDLEVLVISSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVT 104
           ED +VL++  +        P G  E  E+++EA +RE  EE G+ 
Sbjct: 32  EDEKVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLE 76

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 56  LDINEEDLEVLVI--SSQKGKGMLFPKGGW---EIDESIQEAALRETIEEAGVTGIVEDQ 110
              +++ L+VL++  S+    G+    GG+     DES+++  LR+  E+  V     +Q
Sbjct: 30  FTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQ 89

Query: 111 LAEWPEKNVRSRKW-MSVAEARKVCQHWWMKEA 142
           L      +  +R W ++V     +       + 
Sbjct: 90  LCTVGNNSRDARGWSVTVCYTALMSYQACQIQI 122

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 58  INEEDLEVLVI------SSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGV 103
             E D  VL+        + KG+ + FP G  +  E+  +AALRE  EE  +
Sbjct: 43  TREADPRVLLTVRSSELPTHKGQ-IAFPGGSLDAGETPTQAALREAQEEVAL 93

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 62  DLEVLVI--SSQKGKGML-FPKGGW-EIDESIQEAALRETIEEAGVTGIVEDQLA 112
           D  +L+I        G    P GG  +  E ++ A  RE  EE G+       L 
Sbjct: 39  DGRILLIKRKRAPEAGCWGLP-GGKVDWLEPVERAVCREIEEELGIALERATLLC 92

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 64  EVLVISSQKGKGM---LFPKGGWEIDESIQEAALRETIEEAGVT 104
            VL+   ++G G        G  +  E+I++ A RE  EE+G+T
Sbjct: 37  RVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLT 80

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 60  EEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTG 105
           E    VLV +S+ G+    P G     E   +A +RE  EE G+  
Sbjct: 24  EMPDGVLVTASRGGRYN-LPGGKANRGELRSQALIREIREETGLRI 68

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Length = 226

 Score = 37.7 bits (87), Expect = 7e-04
 Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 56  LDINEEDLEVLVI--SSQKGKGMLFPKGGW-EIDESIQEAALRETIEEAGVTGIVEDQLA 112
              NE ++ +L++  + +   G     GG+ + DES+ +AA R   E  G+  +  +Q+ 
Sbjct: 21  FGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVG 80

Query: 113 EWPEKNVRSRKW-MSVA 128
            +   +    +  +S+A
Sbjct: 81  AFGAIDRDPGERVVSIA 97

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 38.0 bits (88), Expect = 7e-04
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 6/100 (6%)

Query: 26  RTGRHLQRYQKGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVI--SSQKGKGML-FPKGG 82
           +       Y    +++    P++   V     +   D  +L++   +  GK +   P GG
Sbjct: 183 QDLVAENNYVIEYKRLWLKAPFKPNFVTVDALVIVND-HILMVQRKAHPGKDLWALP-GG 240

Query: 83  W-EIDESIQEAALRETIEEAGVTGIVEDQLAEWPEKNVRS 121
           + E DE+I +A +RE  EE  +    E        + V  
Sbjct: 241 FLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFD 280

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 78  FPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEW 114
            P G    DES++E   RE  EE G+T +  D   + 
Sbjct: 40  LPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQV 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.87
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.87
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.81
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.8
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.8
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.79
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.79
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.78
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.77
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.76
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.76
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.75
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.75
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.75
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.74
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.74
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.73
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.73
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.73
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.73
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.73
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.72
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.72
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.72
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.72
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.72
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.71
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.7
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.7
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.7
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.7
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.7
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.69
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.69
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.68
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.68
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.68
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.68
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.67
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.67
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.67
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.67
3f13_A	163	Putative nudix hydrolase family member; structural	99.66
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.66
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.66
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.64
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.63
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.63
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.62
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.61
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.61
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.61
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.61
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.6
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.59
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.59
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.59
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.58
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.57
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.57
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.55
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.55
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.55
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.55
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.52
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.52
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.51
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.36
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.35
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.3
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.27
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.24
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.24
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.14
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.09
3bho_A	208	Cleavage and polyadenylation specificity factor su	99.04
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.86

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.87  E-value=2e-21  Score=145.80  Aligned_cols=110  Identities=27%  Similarity=0.275  Sum_probs=85.8

Q ss_pred             EEEEEEEEeeccccccccccCceEEEEEEEeC-CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--------
Q 030947           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--------  111 (168)
Q Consensus        41 ~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--------  111 (168)
                      ++|+|+|+...   .....+++.+|||+++++ .+.|.||||+++.|||+.+||.||++||||+.+.....+        
T Consensus         5 a~G~iifr~~~---~~~~~n~~~e~LL~~r~~~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~   81 (155)
T 3u53_A            5 ACGLIIFRRCL---IPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELN   81 (155)
T ss_dssp             EEEEEEEEECC---CSSSSSCSEEEEEEEESSSSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEE
T ss_pred             EeEEEEEcccc---ccceeCCCcEEEEEEecCCCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeeee
Confidence            57899998531   111222678999999876 478999999999999999999999999999986543300        


Q ss_pred             ----------------------cccCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHhcc
Q 030947          112 ----------------------AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ  153 (168)
Q Consensus       112 ----------------------~~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~~~  153 (168)
                                            ...+..|..+++|++++|+.+++.+++++.++.++.+.+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~ea~~~~~~~~~~~~L~~a~~~L~~~  145 (155)
T 3u53_A           82 YVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAALQEGHQFLCSI  145 (155)
T ss_dssp             EEETTEEEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcceeEEEEEEEEEeccCCccCCCcceeEEEEeEHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence                                  001233778899999999999999999999999888877653

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.87  E-value=8.7e-22  Score=145.62  Aligned_cols=99  Identities=29%  Similarity=0.392  Sum_probs=80.1

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-------  111 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-------  111 (168)
                      +.++|+|+++.+             +|||+++. .|.|.||||+++.|||+.+||.||++||||+++.....+       
T Consensus         4 ~~aag~vv~~~~-------------~vLL~~r~-~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~   69 (134)
T 3i7u_A            4 EFSAGGVLFKDG-------------EVLLIKTP-SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWY   69 (134)
T ss_dssp             EEEEEEEEEETT-------------EEEEEECT-TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEE
T ss_pred             EEEEEEEEEECC-------------EEEEEEeC-CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEe
Confidence            467889998742             89999865 478999999999999999999999999999987544310       


Q ss_pred             -----------cc----------cCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHh
Q 030947          112 -----------AE----------WPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT  151 (168)
Q Consensus       112 -----------~~----------~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~  151 (168)
                                 ..          -+..|+.+++||+++++++++.++..+.++.++.+.+.
T Consensus        70 ~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~l~~~~~r~il~~a~~l~~  130 (134)
T 3i7u_A           70 TLKGERIFKTVKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDKEIFEKALKLKE  130 (134)
T ss_dssp             EETTEEEEEEEEEEEEEEEEECCCCCTTSSEEEEEEHHHHHHHBCSHHHHHHHHHHHHHHH
T ss_pred             cCCCceEEEEEEEEEEEEcCCcCcCChhheEEEEEEHHHHhhhcCChHHHHHHHHHHHHHH
Confidence                       00          13347788999999999999999999998888776554

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.81  E-value=1.1e-18  Score=129.34  Aligned_cols=105  Identities=26%  Similarity=0.248  Sum_probs=85.1

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceec----------
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED----------  109 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~----------  109 (168)
                      ..+++++|...   +      ++.+|||+++.+.+.|.||||+++.|||+.+||.||++||||+++....          
T Consensus         6 ~~v~vvi~~~~---~------~~~~vLl~~r~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~   76 (149)
T 3son_A            6 FQVLVIPFIKT---E------ANYQFGVLHRTDADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIP   76 (149)
T ss_dssp             CEEEEEEEEEC---S------SSEEEEEEEESSSSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEE
T ss_pred             eEEEEEEEEec---C------CCeEEEEEEEcCCCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeeccc
Confidence            46777887654   2      4569999999988999999999999999999999999999999865420          


Q ss_pred             ----------------cccccC--------CCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHhcc
Q 030947          110 ----------------QLAEWP--------EKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ  153 (168)
Q Consensus       110 ----------------~~~~~~--------e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~~~  153 (168)
                                      .....+        ..|..+++|++++++.+++..+..+.++..+.+++..+
T Consensus        77 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~~  144 (149)
T 3son_A           77 NFHFSFNKPYVVPEYCFAIDLTSCSYQVTLSLEHSELRWVSYESAIQLLEWDSNKTALYELNERLKNN  144 (149)
T ss_dssp             GGGTCSSSCSEEEEEEEEEECTTTGGGCCCCTTEEEEEEECHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred             ceeeccCCceEeEEEEEEEEcCCCCCcccCCCceeeEEEeCHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence                            000001        14677899999999999999999999999999888766

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.80  E-value=1.9e-18  Score=125.85  Aligned_cols=104  Identities=26%  Similarity=0.296  Sum_probs=80.7

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEeC-CCceeccceeccCCCCHHHHHHHHHHHHHcCc---ccee-c----
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVT---GIVE-D----  109 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~---~~~~-~----  109 (168)
                      +..+++++++.+   +      ++.+|||++++. ++.|.||||+++.||++.+||.||++||||+.   .... .    
T Consensus         3 ~~~~~~vi~~~~---~------~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~   73 (138)
T 1ktg_A            3 VKAAGLVIYRKL---A------GKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHET   73 (138)
T ss_dssp             EEEEEEEEEEEE---T------TEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEE
T ss_pred             eEEEEEEEEEec---C------CCcEEEEEEccCCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccce
Confidence            457888898864   1      346899999873 46899999999999999999999999999994   3322 1    


Q ss_pred             --------------c---c----cccCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHh
Q 030947          110 --------------Q---L----AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT  151 (168)
Q Consensus       110 --------------~---~----~~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~  151 (168)
                                    .   .    ...+..+..++.|++++++.++..++.++.++..+.+++.
T Consensus        74 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~  136 (138)
T 1ktg_A           74 LFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIADYAEMGSLLRKFSAFLA  136 (138)
T ss_dssp             EEEEETTEEEEEEEEEEEECSCCCCCCCTTEEEEEEECHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCceEEEEEEEEecCCcccCCCchhcEeEeccHHHHHHhhccchHHHHHHHHHHHhh
Confidence                          0   0    0012336678999999999999999988888888877663

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.80  E-value=6.9e-19  Score=137.16  Aligned_cols=107  Identities=19%  Similarity=0.212  Sum_probs=82.9

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCc-cceec------
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVT-GIVED------  109 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~-~~~~~------  109 (168)
                      .++..+++++++.           ++.+|||++++..+.|.||||+++.|||+.+||+||++||||++ +....      
T Consensus        43 ~~h~~~~~vv~~~-----------~~~~vLL~~r~~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~  111 (197)
T 3fcm_A           43 IAHLTSSAFAVNK-----------ERNKFLMIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFAL  111 (197)
T ss_dssp             SEEEEEEEEEECT-----------TSCEEEEEEETTTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEE
T ss_pred             CccEEEEEEEEEC-----------CCCEEEEEEecCCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEE
Confidence            5677888888864           23489999999889999999999999999999999999999998 43211      


Q ss_pred             ----c-----------------ccc-----------cCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHhccc
Q 030947          110 ----Q-----------------LAE-----------WPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ  154 (168)
Q Consensus       110 ----~-----------------~~~-----------~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~  154 (168)
                          .                 ..+           .+..|..+++|++++++.+++..+.++.++.++.+++..+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~~~l~~~~  188 (197)
T 3fcm_A          112 DVLTVNGHIKRGKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKYCSEPHMIPIYEKLINKLKTQS  188 (197)
T ss_dssp             EEEEECCEEETTEEECCEEEEEEEEEEECCTTSCCCCCC----CEEEEEGGGHHHHCCCGGGHHHHHHHHHHHHC--
T ss_pred             EEeeecCccccCcccCCceeEEEEEEEEeCCCcccCCCcccccceEEccHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence                0                 000           01236678999999999999999999999999999988763

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.79  E-value=4.7e-19  Score=136.90  Aligned_cols=109  Identities=20%  Similarity=0.159  Sum_probs=84.7

Q ss_pred             CceeEEEEEEEEeeccccccccccC----ceEEEEEEEe----------CCCceeccceeccCCCCHHHHHHHHHHHHHc
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEE----DLEVLVISSQ----------KGKGMLFPKGGWEIDESIQEAALRETIEEAG  102 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~----~~~vLLv~r~----------~~~~W~lPgG~ve~gEt~~~aA~REl~EEtG  102 (168)
                      ..++.+++++|..+   +      +    +.+|||+++.          ..+.|.||||+++.|||+.+||+||++||||
T Consensus        25 p~~~~v~~vv~~~~---~------~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtG   95 (187)
T 3i9x_A           25 PDGYTSDMILTTVK---E------LNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETS   95 (187)
T ss_dssp             CSEEEEEEEEEEEE---E------ETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHC
T ss_pred             cccceEEEEEEEEc---C------CCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHC
Confidence            44588999999875   1      3    4699999993          3588999999999999999999999999999


Q ss_pred             Cccceeccccc-----------------------------cCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHhcc
Q 030947          103 VTGIVEDQLAE-----------------------------WPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ  153 (168)
Q Consensus       103 i~~~~~~~~~~-----------------------------~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~~~  153 (168)
                      +++.....+..                             .+..|..+++|+++++++++...+..+.++..+++++.++
T Consensus        96 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~~~~il~~a~~~l~~~  175 (187)
T 3i9x_A           96 LTDIPLIPFGVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAFDHLDMLKKAFSAITEE  175 (187)
T ss_dssp             CCSCCCEEEEEECCTTSSTTSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTTSCBSTTHHHHHHHHHHHHHHH
T ss_pred             CCCcceEEEEEEcCCccCCCCCEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHcccCCCCccHHHHHHHHHHHHHhh
Confidence            98654441100                             0123567799999999998766667888888888877764


Q ss_pred             c
Q 030947          154 Q  154 (168)
Q Consensus       154 ~  154 (168)
                      .
T Consensus       176 ~  176 (187)
T 3i9x_A          176 F  176 (187)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.79  E-value=4.3e-19  Score=132.45  Aligned_cols=92  Identities=23%  Similarity=0.219  Sum_probs=75.2

Q ss_pred             eEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc-------------------------cc
Q 030947           63 LEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA-------------------------EW  114 (168)
Q Consensus        63 ~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~-------------------------~~  114 (168)
                      .+|||+++.+   .+.|.||||+++.|||+.+||.||++||||+++.....+.                         ..
T Consensus        32 ~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  111 (156)
T 3gg6_A           32 DEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERGPSWVRFVFLARPTGGILKTSKE  111 (156)
T ss_dssp             SEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESSTTEEEEEEEEEEEEECCCCGGG
T ss_pred             CEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcCCCCEEEEEEEEEeeCCeeccCCC
Confidence            4899999986   5899999999999999999999999999999876554110                         01


Q ss_pred             CCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHhccc
Q 030947          115 PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQ  154 (168)
Q Consensus       115 ~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~  154 (168)
                      ++.|..+++|++++++++++..+.++.++..+...+..+.
T Consensus       112 ~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~~~~  151 (156)
T 3gg6_A          112 ADAESLQAAWYPRTSLPTPLRAHDILHLVELAAQYRQQAR  151 (156)
T ss_dssp             CSSSCSEEEEEETTSCCSSBSCTHHHHHHHHHHHHHHHHH
T ss_pred             CCcceeeeEEEcHHHCcccccchhHHHHHHHHHHHhhcCC
Confidence            2246778999999999999999989888888777766543

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.77  E-value=2.7e-18  Score=123.22  Aligned_cols=98  Identities=33%  Similarity=0.344  Sum_probs=77.1

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--------
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--------  111 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--------  111 (168)
                      ..+++++++.+            .+|||+++.+ |.|.||||+++.||++.+||.||++||||+.+.....+        
T Consensus         3 ~~~~~vi~~~~------------~~vLl~~r~~-g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~   69 (126)
T 1vcd_A            3 LGAGGVVFNAK------------REVLLLRDRM-GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNP   69 (126)
T ss_dssp             EEEEEEEECTT------------SCEEEEECTT-SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECT
T ss_pred             eEEEEEEEcCC------------CEEEEEEECC-CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecC
Confidence            35677777632            3799999876 89999999999999999999999999999987543300        


Q ss_pred             ------c----------ccCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHH
Q 030947          112 ------A----------EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL  150 (168)
Q Consensus       112 ------~----------~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~  150 (168)
                            .          ..++.+..++.|++++++.+++.++.++.++..+.+++
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~l~~~~~~l  124 (126)
T 1vcd_A           70 KGVEREVHWFLMRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERL  124 (126)
T ss_dssp             TSCEEEEEEEEEEEESCCCCCTTCCEEEEECHHHHHHHBCSHHHHHHHHHHHHHS
T ss_pred             CceEEEEEEEEEEcCCCCCCCcceeeeEEcCHHHHHHhhcChhHHHHHHHHHHhc
Confidence                  0          01233667899999999999999998888888776653

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.76  E-value=2.5e-18  Score=128.95  Aligned_cols=100  Identities=18%  Similarity=0.226  Sum_probs=78.6

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc-------
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA-------  112 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~-------  112 (168)
                      .++++++++ +            ++|||+++.+.|.|.||||+++.|||+.+||.||++||||+++.....+.       
T Consensus         2 ~~~~~vi~~-~------------~~vLL~~r~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~   68 (156)
T 1k2e_A            2 IVTSGVLVE-N------------GKVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENA   68 (156)
T ss_dssp             EEEEEECEE-T------------TEEEEEECTTTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSE
T ss_pred             eEEEEEEEE-C------------CEEEEEEEcCCCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccceeeeccccc
Confidence            467777776 2            17999999888899999999999999999999999999999875443210       


Q ss_pred             --------------cc----------------CCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHhc
Q 030947          113 --------------EW----------------PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTS  152 (168)
Q Consensus       113 --------------~~----------------~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~~  152 (168)
                                    .+                +..+..+++|+++++++++...+.++.++..+.+.+..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~~  138 (156)
T 1k2e_A           69 VERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRIETFPNVRKVVSLALSTLYR  138 (156)
T ss_dssp             EECCCCSEEEEEEEECSSCEEEEEEEEEEEEEEEECCCSCEEEEGGGGGGSCBSTTHHHHHHHHHHHHHH
T ss_pred             ccccccceeeeeeecCCCCceEEEEEEEEEEecCCcEeeeEEeCHHHHhcCCCChHHHHHHHHHHHHHHh
Confidence                          01                12245678999999999988888888888887776543

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.76  E-value=1.2e-17  Score=124.35  Aligned_cols=102  Identities=19%  Similarity=0.167  Sum_probs=78.8

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeCC-----CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL  111 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~-----~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~  111 (168)
                      .++..+++++++.            +.+|||++|...     +.|.||||+++.||++.+||.||++||||+.+.....+
T Consensus         6 ~~~~~v~~vi~~~------------~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~   73 (153)
T 3grn_A            6 PYIISVYALIRNE------------KGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIA   73 (153)
T ss_dssp             CEEEEEEEEEECT------------TCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEE
T ss_pred             ceEEEEEEEEEcC------------CCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEE
Confidence            4567778888753            237999998853     78999999999999999999999999999987644411


Q ss_pred             -------------------ccc-----CCCceeeEEEEeHhHHHhhc-CChhHHHHHHHHHHHH
Q 030947          112 -------------------AEW-----PEKNVRSRKWMSVAEARKVC-QHWWMKEALDRLVMRL  150 (168)
Q Consensus       112 -------------------~~~-----~e~e~~~~~W~~~~e~~~~~-~~~~~~~~l~~~~~~~  150 (168)
                                         ...     +..+..+++|++++++.++. ..+.++.++..+.+.-
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~~l~~~~  137 (153)
T 3grn_A           74 GQVNFELTEKKVIAIVFDGGYVVADVKLSYEHIEYSWVSLEKILGMETLPAYFRDFFERFDREN  137 (153)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCCCCCCTTEEEEEEECHHHHTTCSSSCHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCceEEEEEEEEEecCCcEecCCCcceEEEEEHHHhhhcccchHHHHHHHHHHhccc
Confidence                               000     12367789999999999988 7787878777765543

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.75  E-value=2.6e-18  Score=135.20  Aligned_cols=107  Identities=12%  Similarity=0.144  Sum_probs=83.5

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc----
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA----  112 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~----  112 (168)
                      ..+..+++++++.             .+|||+++...|.|.||||+++.|||+.+||.||++||||+.+.....+.    
T Consensus        66 ~~~~~v~~vv~~~-------------~~vLLv~r~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~  132 (205)
T 3q1p_A           66 TPKVDIRAVVFQN-------------EKLLFVKEKSDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDK  132 (205)
T ss_dssp             CCEEEEEEEEEET-------------TEEEEEEC---CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEH
T ss_pred             CCcceEEEEEEEC-------------CEEEEEEEcCCCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEec
Confidence            3467788888852             18999999878899999999999999999999999999999875443100    


Q ss_pred             -------------------------ccCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHhcccCC
Q 030947          113 -------------------------EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLH  156 (168)
Q Consensus       113 -------------------------~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~~~  156 (168)
                                               .-+..|..++.|+++++++++...+.+.+.+..+++.+....+.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~~~~~~i~~~~~~~~~~~~~  201 (205)
T 3q1p_A          133 EKHQPSPSATHVYKIFIGCEIIGGEKKTSIETEEVEFFGENELPNLSIARNTEDQIKEMFAYMKDPQKE  201 (205)
T ss_dssp             HHHSCCCCSSCEEEEEEEEEEEEECCCCCTTSCCEEEECTTSCCCBCTTTCCHHHHHHHHHHHHCTTSC
T ss_pred             cccCCCCCCceEEEEEEEEEecCCccCCCCcceEEEEEeHHHhhhcCCCccHHHHHHHHHHHHhCCCCC
Confidence                                     00224677899999999999988888899999988888776544

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.75  E-value=6.1e-18  Score=126.87  Aligned_cols=95  Identities=23%  Similarity=0.224  Sum_probs=72.3

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc-----
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA-----  112 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~-----  112 (168)
                      .+..+++++++.             .+|||+++++.+.|.||||+++.|||+.+||+||++||||+++.....+.     
T Consensus         5 ~~~~v~~vi~~~-------------~~vLL~~r~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~   71 (159)
T 3f6a_A            5 RHFTVSVFIVCK-------------DKVLLHLHKKAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKK   71 (159)
T ss_dssp             SCEEEEEEEEET-------------TEEEEEECSSSCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHH
T ss_pred             ceEEEEEEEEEC-------------CEEEEEEcCCCCeEECCccCccCCCCHHHHHHHHHHHHhCCCceecccccccccc
Confidence            456788888863             18999999988999999999999999999999999999999875433110     


Q ss_pred             ------------------------------cc-----------CCCceeeEEEEeHhHHHhhc-CChhHHHHHHH
Q 030947          113 ------------------------------EW-----------PEKNVRSRKWMSVAEARKVC-QHWWMKEALDR  145 (168)
Q Consensus       113 ------------------------------~~-----------~e~e~~~~~W~~~~e~~~~~-~~~~~~~~l~~  145 (168)
                                                    .|           ...|..+++|++++++.++. ..+++..+.+.
T Consensus        72 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~  146 (159)
T 3f6a_A           72 SCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKILKWYSKEDLKNAHNIQENILVMATE  146 (159)
T ss_dssp             HHHHTTCEEECCCSEEEEECSSSSSCEEEEEEEEECSCSCCCCCTTSCCCEEEECSSSSTTCSSSCHHHHHHHHH
T ss_pred             cccccccccccCccccccccCCCCceEEEEEEEEEeCCCCcCCCCCcccceEEeeHHHHhhCcCCChhHHHHHHH
Confidence                                          01           12366789999999999987 44444444433

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.75  E-value=1.1e-17  Score=142.00  Aligned_cols=115  Identities=29%  Similarity=0.397  Sum_probs=89.9

Q ss_pred             eEEEEEEEEeeccc----cc-------cccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCcccee
Q 030947           40 QVVGCIPYRYKCVK----QS-------LDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVE  108 (168)
Q Consensus        40 ~~~g~v~~~~~~~~----~g-------~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~  108 (168)
                      ..+|+|+|+.....    .|       .++++++.+|||+++...+.|.||||+++.|||+.+||+||++||||+++...
T Consensus         4 ~aag~i~~r~~~~~~i~~~~~i~~~~~~~i~~~~~~vLLv~r~~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~   83 (364)
T 3fjy_A            4 EAAGGIVWRWKAGSDIANDPAIASSKSAQEQLDSIEVCIVHRPKYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLG   83 (364)
T ss_dssp             CEEEEEEEEECTTSHHHHCGGGGGGSCHHHHHTTEEEEEEEETTTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEE
T ss_pred             cccCcEEEEeeccccccCCccccccccccccCCceEEEEEEcCCCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeec
Confidence            47899999975110    00       12334678999999988899999999999999999999999999999986433


Q ss_pred             ccc---------------------------ccc-----------------------CCCceeeEEEEeHhHHHhhcCChh
Q 030947          109 DQL---------------------------AEW-----------------------PEKNVRSRKWMSVAEARKVCQHWW  138 (168)
Q Consensus       109 ~~~---------------------------~~~-----------------------~e~e~~~~~W~~~~e~~~~~~~~~  138 (168)
                      ..+                           ..|                       ++.|..+++||+++++.+++.++.
T Consensus        84 ~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~  163 (364)
T 3fjy_A           84 PYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHST  163 (364)
T ss_dssp             EEEEEEC---------------------CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCHH
T ss_pred             cccceEEEeccCCCcccccccccccCceEEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhcchh
Confidence            300                           000                       114677899999999999999999


Q ss_pred             HHHHHHHHHHHHhccc
Q 030947          139 MKEALDRLVMRLTSQQ  154 (168)
Q Consensus       139 ~~~~l~~~~~~~~~~~  154 (168)
                      .+.++..+.+++..+.
T Consensus       164 ~r~il~~~~~~l~~g~  179 (364)
T 3fjy_A          164 DKDTLAVFVDRVQEGA  179 (364)
T ss_dssp             HHHHHHHHHHHHHTTG
T ss_pred             hHHHHHHHHHHhccCC
Confidence            9999999999887654

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.74  E-value=1.6e-17  Score=121.98  Aligned_cols=86  Identities=24%  Similarity=0.245  Sum_probs=66.8

Q ss_pred             EEEEEEEeC------CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc-----------------------cc
Q 030947           64 EVLVISSQK------GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA-----------------------EW  114 (168)
Q Consensus        64 ~vLLv~r~~------~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~-----------------------~~  114 (168)
                      +|||++|..      .|.|.||||+++.||++.+||.||++||||+.+.....+.                       ..
T Consensus        18 ~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~   97 (140)
T 3gwy_A           18 KYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDFEITMHAFLCHPVGQRY   97 (140)
T ss_dssp             EEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSSCCEEEEEEEEEECCSCC
T ss_pred             EEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCCceEEEEEEEEEecCCcc
Confidence            799999874      3679999999999999999999999999999876544110                       01


Q ss_pred             CCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHH
Q 030947          115 PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMR  149 (168)
Q Consensus       115 ~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~  149 (168)
                      ...+..+++|++++++.++...+..+.+++.+.+.
T Consensus        98 ~~~E~~~~~W~~~~el~~~~~~~~~~~il~~~~~~  132 (140)
T 3gwy_A           98 VLKEHIAAQWLSTREMAILDWAEADKPIVRKISEQ  132 (140)
T ss_dssp             CCCSSCEEEEECHHHHTTSCBCGGGHHHHHHHHC-
T ss_pred             cccccceeEeccHHHHhhCCCCcccHHHHHHHHhC
Confidence            12356789999999999998888888888776544

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.74  E-value=1.3e-17  Score=122.47  Aligned_cols=99  Identities=19%  Similarity=0.286  Sum_probs=76.4

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeC-CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec--c------
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED--Q------  110 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~--~------  110 (168)
                      ..+++++++.           +++++||+++.. .|.|.||||+++.||++.+||.||++||||+.+....  .      
T Consensus        10 ~~v~~~i~~~-----------~~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~   78 (150)
T 2o1c_A           10 VSILVVIYAQ-----------DTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRT   78 (150)
T ss_dssp             EEEEEEEEET-----------TTCEEEEEECSSSTTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEE
T ss_pred             eEEEEEEEeC-----------CCCEEEEEEecCCCCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeece
Confidence            5677888763           224899999876 6899999999999999999999999999999864310  0      


Q ss_pred             ---------------------cccc----------CCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHH
Q 030947          111 ---------------------LAEW----------PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMR  149 (168)
Q Consensus       111 ---------------------~~~~----------~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~  149 (168)
                                           ...|          ...+..+++|++++++.++...+..+.++..+.++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~  148 (150)
T 2o1c_A           79 VEFEIFSHLRHRYAPGVTRNTESWFCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVIN  148 (150)
T ss_dssp             EEEECCGGGGGGBCTTCCEEEEEEEEEEESSCCCCCCSSSSCEEEEEHHHHHHHCSCHHHHHHHHHHTTC
T ss_pred             eeeeeecccccccCCCCcceEEEEEEEEcCCCCCcChhHhhccEeecHHHHHhhhcCHHHHHHHHHHHHh
Confidence                                 0000          11366789999999999998888888888776543

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.73  E-value=2.7e-17  Score=120.90  Aligned_cols=98  Identities=20%  Similarity=0.286  Sum_probs=74.9

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc------
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------  111 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------  111 (168)
                      .+..+++++++.           ++.+|||+++ ..+.|.||||+++.||++.+||.||++||||+.+.....+      
T Consensus        17 ~~~~~~~vi~~~-----------~~~~vLl~~r-~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~   84 (148)
T 2azw_A           17 TRYAAYIIVSKP-----------ENNTMVLVQA-PNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEY   84 (148)
T ss_dssp             ECCEEEEECEEG-----------GGTEEEEEEC-TTSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEE
T ss_pred             eeeEEEEEEECC-----------CCCeEEEEEc-CCCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEE
Confidence            345677777764           2348999997 4589999999999999999999999999999986433310      


Q ss_pred             --------------ccc----------CCCceeeEEEEeHhHHHhhcCChhHHHHHHHHH
Q 030947          112 --------------AEW----------PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV  147 (168)
Q Consensus       112 --------------~~~----------~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~  147 (168)
                                    ..|          +..+..++.|++++++.+++..+.++.++.++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~  144 (148)
T 2azw_A           85 FYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLLKRGSHRWAVEKWL  144 (148)
T ss_dssp             EEETTTTEEEEEEEEEEEEEEEEECSSCC-CCSEEEEECHHHHHHHBSCHHHHHHHHHHH
T ss_pred             EcCCCCCcceEEEEEEEEEEcCcCCcCCCCceeeEEEeeHHHHHhhhcchhHHHHHHHHH
Confidence                          000          122456899999999999998888888887765

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.73  E-value=8.7e-18  Score=131.62  Aligned_cols=114  Identities=30%  Similarity=0.516  Sum_probs=72.7

Q ss_pred             ccCccchhhhhhhccccccccccC-CceeEEEEEEEEeeccccccccccCceEEEEEEEeC-CCceeccceeccCCCCHH
Q 030947           13 LVTPENVVGNLVSRTGRHLQRYQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQ   90 (168)
Q Consensus        13 ~~~~~~~~~~~~~~~g~~~~r~~~-~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~   90 (168)
                      +-++..|...++.........|.. .++..+++|+++.+          ++.+|||+++.+ ++.|.||||+++.|||+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~----------~~~~vLLv~r~~~~g~W~lPgG~ve~gEt~~   82 (194)
T 2fvv_A           13 LGTENLYFQSMMKLKSNQTRTYDGDGYKKRAACLCFRSE----------SEEEVLLVSSSRHPDRWIVPGGGMEPEEEPS   82 (194)
T ss_dssp             -----------------CCCCBCTTSCEEEEEEEEESST----------TCCEEEEEECSSCTTSEECSEEECCTTCCHH
T ss_pred             CCCccHHHHHHHHhccCCccccccCCccccEEEEEEEEC----------CCCEEEEEEEeCCCCcEECCCCcCCCCcCHH
Confidence            344445555555554444445555 67888899888643          345899999865 589999999999999999


Q ss_pred             HHHHHHHHHHHcCccceecccc-----------------------ccCCC--ceeeEEEEeHhHHHhhcCC
Q 030947           91 EAALRETIEEAGVTGIVEDQLA-----------------------EWPEK--NVRSRKWMSVAEARKVCQH  136 (168)
Q Consensus        91 ~aA~REl~EEtGi~~~~~~~~~-----------------------~~~e~--e~~~~~W~~~~e~~~~~~~  136 (168)
                      +||+||++||||+++.....+.                       .++..  +..+++||+++++.+++..
T Consensus        83 eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~~W~~~~el~~~l~~  153 (194)
T 2fvv_A           83 VAAVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQY  153 (194)
T ss_dssp             HHHHHHHHHHHCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCccccceEEEEEEcCCCceEEEEEEEEEccccCCCCCcccccceEEEEEHHHHHHHHhc
Confidence            9999999999999876444110                       00110  2357899999999987653

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.73  E-value=1.6e-17  Score=124.88  Aligned_cols=96  Identities=19%  Similarity=0.189  Sum_probs=72.8

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEe---CCCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQ---KGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--  111 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~---~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--  111 (168)
                      ..+..+++++++.             .+|||+++.   ..+.|.||||+++.||++.+||.||++||||+.+.....+  
T Consensus        27 ~~~~~v~~vi~~~-------------~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~   93 (157)
T 4dyw_A           27 QPRVGCGAAIVRD-------------GRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCV   93 (157)
T ss_dssp             CCEEEEEEEEEET-------------TEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEE
T ss_pred             CceeEEEEEEEEC-------------CEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEE
Confidence            3567788888862             189999998   3588999999999999999999999999999986544310  


Q ss_pred             --------------c------------ccCCCceeeEEEEeHhHHHhhcCChhHHHHHHHH
Q 030947          112 --------------A------------EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRL  146 (168)
Q Consensus       112 --------------~------------~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~  146 (168)
                                    .            ..+..+..+++|++++++.+ ...+..+.++..+
T Consensus        94 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~-~l~~~~~~~l~~l  153 (157)
T 4dyw_A           94 VDHIDAANGEHWVAPVYLAHAFSGEPRVVEPDRHEALGWFALDDLPQ-PLTHATRIALEQV  153 (157)
T ss_dssp             EEEEETTTTEEEEEEEEEESEEESCCCCSCTTTEEEEEEEETTSCCS-SBCHHHHHHHHHH
T ss_pred             EEeeccCCCcEEEEEEEEEEEcCCCcccCCCCcEeEEEEECHHHccc-ccCHHHHHHHHHH
Confidence                          0            00123677899999999998 4456666666554

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.73  E-value=2e-17  Score=133.69  Aligned_cols=108  Identities=21%  Similarity=0.290  Sum_probs=80.3

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccC--CCCHHHHHHHHHHHHHcCccceeccc
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEI--DESIQEAALRETIEEAGVTGIVEDQL  111 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~--gEt~~~aA~REl~EEtGi~~~~~~~~  111 (168)
                      ...+.+++|++...   +      ++.+|||++|..   .|.|.||||+++.  |||+.+||.||++||||+++...+++
T Consensus        20 ~p~v~v~~vi~~~~---~------~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l   90 (240)
T 3gz5_A           20 AQLLTVDAVLFTYH---D------QQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQL   90 (240)
T ss_dssp             -CEEEEEEEEEEEE---T------TEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEE
T ss_pred             CCccEEEEEEEEEe---C------CCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeE
Confidence            35688999998765   2      557999999875   4789999999999  99999999999999999987655522


Q ss_pred             ccc---------------------------CCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHhcc
Q 030947          112 AEW---------------------------PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ  153 (168)
Q Consensus       112 ~~~---------------------------~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~~~  153 (168)
                      ..+                           ...+..++.|+++++++......+...++..+.+++..+
T Consensus        91 ~~~~~~~r~~~~~~~~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~~~l~~dh~~il~~a~~rlr~k  159 (240)
T 3gz5_A           91 CTVGNNSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQMPLAFDHLQLIEQARERLTQK  159 (240)
T ss_dssp             EEEEESSSSTTSCEEEEEEEEECCHHHHHHHHTTCTTEEEEEHHHHTTSCCSTTHHHHHHHHHHHHHHH
T ss_pred             EEeCCCccCCCceEEEEEEEEEecccccCCCCCcccceEEecHHHcccCCcchhHHHHHHHHHHHHHHh
Confidence            110                           122556899999999986544444566666666665543

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.73  E-value=5.4e-17  Score=126.72  Aligned_cols=95  Identities=20%  Similarity=0.301  Sum_probs=71.7

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc--
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA--  112 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~--  112 (168)
                      ..+..+++++++.+           +.+|||++++.  .+.|.||||+++.||++.+||+||++||||+.+.....+.  
T Consensus        24 ~~~v~v~~~v~~~~-----------~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~   92 (199)
T 3h95_A           24 SHQVGVAGAVFDES-----------TRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIR   92 (199)
T ss_dssp             --CCEEEEEEEETT-----------TTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEE
T ss_pred             cccceEEEEEEeCC-----------CCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEE
Confidence            34567778888642           34899999886  5899999999999999999999999999999875443110  


Q ss_pred             ---------------------------ccCCCceeeEEEEeHhHHHhhcCChhHHHH
Q 030947          113 ---------------------------EWPEKNVRSRKWMSVAEARKVCQHWWMKEA  142 (168)
Q Consensus       113 ---------------------------~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~  142 (168)
                                                 ...+.|..++.|++++++.++.....+...
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~  149 (199)
T 3h95_A           93 QQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTENTTPITSR  149 (199)
T ss_dssp             ECC---------CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCSSBCHHHHH
T ss_pred             eeecCCCCceeEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhhhhcChHHHH
Confidence                                       002347788999999999998765555433

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.72  E-value=1.6e-17  Score=130.78  Aligned_cols=105  Identities=14%  Similarity=0.178  Sum_probs=84.3

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc------
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------  111 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------  111 (168)
                      .+..+++++++.             .+|||+++. .+.|.||||+++.|||+.+||.||++||||+.+.....+      
T Consensus        69 ~~~~v~~vv~~~-------------~~vLLvrr~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~  134 (206)
T 3o8s_A           69 PKLDTRAAIFQE-------------DKILLVQEN-DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKH  134 (206)
T ss_dssp             CEEEEEEEEEET-------------TEEEEEECT-TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHH
T ss_pred             CCccEEEEEEEC-------------CEEEEEEec-CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEecc
Confidence            456777788763             289999988 789999999999999999999999999999986544310      


Q ss_pred             -------------c----------ccCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHhcccCC
Q 030947          112 -------------A----------EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQQLH  156 (168)
Q Consensus       112 -------------~----------~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~~~  156 (168)
                                   .          .-+..|..+++|+++++++++...+.+.+.+..+++.+....+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~~~~~~l~~~~~~~~~~~~~  202 (206)
T 3o8s_A          135 KNNPAKSAHRVTKVFILCRLLGGEFQPNSETVASGFFSLDDLPPLYLGKNTAEQLALCLEASRSEHWE  202 (206)
T ss_dssp             HHCC-----CEEEEEEEEEEEEECCCCCSSCSEEEEECTTSCCCBCTTTCCHHHHHHHHHHHHCSSCC
T ss_pred             ccCCCCCCceEEEEEEEEEecCCeecCCCCceEEEEEeHHHhhhccCCCchHHHHHHHHHHHHCCCCC
Confidence                         0          00224677899999999999988888999999998887776544

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.72  E-value=1.5e-17  Score=125.98  Aligned_cols=98  Identities=17%  Similarity=0.177  Sum_probs=75.4

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeC-CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc----
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL----  111 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~----  111 (168)
                      .++..+++|+++.             .+|||+++.. .+.|.||||+++.||++.+||+||++||||+++.....+    
T Consensus        21 ~~~~~v~~ii~~~-------------~~vLL~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~   87 (171)
T 3id9_A           21 IMQVRVTGILIED-------------EKVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCD   87 (171)
T ss_dssp             -CEEEEEEEEEET-------------TEEEEEECSSTTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEE
T ss_pred             ceEEEEEEEEEEC-------------CEEEEEEEECCCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEEEc
Confidence            4566777777753             2899999886 689999999999999999999999999999987544410    


Q ss_pred             ---------------cc-----------cCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHH
Q 030947          112 ---------------AE-----------WPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV  147 (168)
Q Consensus       112 ---------------~~-----------~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~  147 (168)
                                     ..           .+..|..+++|++++++.++...+.++.++.+.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~~~~l~~~~  149 (171)
T 3id9_A           88 KPDASPSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYYGFSETFINLISGGL  149 (171)
T ss_dssp             ETTSSSCEEEEEEEEEEC-------------CCCCCEEEEETGGGGGGTCCTTCSHHHHHGG
T ss_pred             ccCCCCcEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHHhhCCCCHHHHHHHHHhh
Confidence                           00           0123567899999999999887777777776653

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.72  E-value=2.9e-17  Score=122.84  Aligned_cols=87  Identities=23%  Similarity=0.205  Sum_probs=69.2

Q ss_pred             eEEEEEEEeCC----CceeccceeccCCCCHHHHHHHHHHHHHcCccceecc--c-------------------c----c
Q 030947           63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ--L-------------------A----E  113 (168)
Q Consensus        63 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~--~-------------------~----~  113 (168)
                      .+|||++|...    |.|.||||+++.||++.+||.||++||||+.+.....  +                   .    .
T Consensus        41 ~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (158)
T 3hhj_A           41 NRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGYETFHLLMPLYFCSHYKGV  120 (158)
T ss_dssp             SEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSCEEEEEEEEESCCBSC
T ss_pred             CEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEEEeeccCCcEEEEEEEEEEECCCc
Confidence            48999998753    6899999999999999999999999999998654320  0                   0    0


Q ss_pred             cCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHH
Q 030947          114 WPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMR  149 (168)
Q Consensus       114 ~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~  149 (168)
                      ....+..++.|++++++.++...+.++.+++.+.++
T Consensus       121 ~~~~e~~~~~W~~~~el~~~~~~~~~~~il~~~~~~  156 (158)
T 3hhj_A          121 AQGREGQNLKWIFINDLDKYPMPEADKPLVQVLKNF  156 (158)
T ss_dssp             CCCTTSCEEEEEEGGGGGGSCCCTTTHHHHHHHHHC
T ss_pred             cCCccccceEEEcHHHHhhCCCCcchHHHHHHHHHh
Confidence            112366789999999999988888888888777654

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.72  E-value=8e-17  Score=117.89  Aligned_cols=100  Identities=18%  Similarity=0.176  Sum_probs=72.4

Q ss_pred             CceeEEEEEEEEeeccccccccccCceE--EEEEEEeCC-CceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc-
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLE--VLVISSQKG-KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA-  112 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~--vLLv~r~~~-~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~-  112 (168)
                      ..+..+++++++.+          .+.+  |||+++... +.|.||||+++.|||+.+||.||++||||+.+.....+. 
T Consensus         7 ~p~~~v~~vi~~~~----------~~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~   76 (139)
T 2yyh_A            7 TPLLATDVIIRLWD----------GENFKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGV   76 (139)
T ss_dssp             CCEEEEEEEEEEEE----------TTEEEEEEEEEECSSSCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_pred             CCeEEEEEEEEEEc----------CCCcEEEEEEEecCCCCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEE
Confidence            35678899998854          3346  999998753 569999999999999999999999999999875443110 


Q ss_pred             ---------------c---------cCCCceeeEEEEeHhHHH-hhcCChhHHHHHHHHH
Q 030947          113 ---------------E---------WPEKNVRSRKWMSVAEAR-KVCQHWWMKEALDRLV  147 (168)
Q Consensus       113 ---------------~---------~~e~e~~~~~W~~~~e~~-~~~~~~~~~~~l~~~~  147 (168)
                                     .         .+..+..+++|++++++. +.+..+ ...++..+.
T Consensus        77 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~~~~W~~~~el~~~~l~~~-~~~~l~~~l  135 (139)
T 2yyh_A           77 YSDPERDPRAHVVSVVWIGDAQGEPKAGSDAKKVKVYRLEEIPLDKLVFD-HKKIILDFL  135 (139)
T ss_dssp             ECCTTSCTTSCEEEEEEEEEEESCCCCCTTEEEEEEECTTSCCGGGBCTT-HHHHHHHHH
T ss_pred             ECCCCcCCCceEEEEEEEEecCCccCCCCCcceEEEEEHHHCCHhhcCCC-HHHHHHHHH
Confidence                           0         022366789999999999 334433 344554443

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.72  E-value=7.8e-17  Score=124.87  Aligned_cols=106  Identities=22%  Similarity=0.251  Sum_probs=81.5

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc---
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL---  111 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~---  111 (168)
                      .+..+++|+++.             .+|||+++..   .+.|.||||+++.|||+.+||+||++||||+.+.....+   
T Consensus        39 ~~~~v~~ii~~~-------------~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~  105 (189)
T 3cng_A           39 PKVIVGCIPEWE-------------NKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVY  105 (189)
T ss_dssp             CEEEEEEEEEET-------------TEEEEEEESSSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEE
T ss_pred             CceEEEEEEEeC-------------CEEEEEEccCCCCCCeEECceeeccCCCCHHHHHHHHHHHHHCCccccceeEEEE
Confidence            456777777762             1899999975   578999999999999999999999999999987544310   


Q ss_pred             ---------c----------ccCCCceeeEEEEeHhHHH-hhcCChhHHHHHHHHHHHHhcccCC
Q 030947          112 ---------A----------EWPEKNVRSRKWMSVAEAR-KVCQHWWMKEALDRLVMRLTSQQLH  156 (168)
Q Consensus       112 ---------~----------~~~e~e~~~~~W~~~~e~~-~~~~~~~~~~~l~~~~~~~~~~~~~  156 (168)
                               .          ..+..|..++.|++++++. ..+.++.....+..+++....+.+.
T Consensus       106 ~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~~~~~~l~~~l~~~~~~~~~  170 (189)
T 3cng_A          106 SLPHISQVYMLFRAKLLDLDFFPGIESLEVRLFGEQEIPWNDIAFRVIHDPLKRYMEERHHGQPA  170 (189)
T ss_dssp             EEGGGTEEEEEEEEEECCSCCCCCTTEEEEEEECTTTCCGGGBSCHHHHHHHHHHHHHHHHSSCC
T ss_pred             ecCCCcEEEEEEEEEeCCCccCCCccceeEEEECHHHcCcccccChHHHHHHHHHHHhccCCCcc
Confidence                     0          0124467789999999998 4567888888888887776655444

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.71  E-value=1.8e-17  Score=122.17  Aligned_cols=87  Identities=18%  Similarity=0.233  Sum_probs=66.4

Q ss_pred             EEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceec-----------
Q 030947           41 VVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED-----------  109 (168)
Q Consensus        41 ~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~-----------  109 (168)
                      .+++++++.           ++.+|||+++...+.|.||||+++.|||+.+||.||++||||+.+....           
T Consensus         6 ~~~~~i~~~-----------~~~~vLl~~r~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   74 (146)
T 2jvb_A            6 VRGAAIFNE-----------NLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQ   74 (146)
T ss_dssp             CEEEEEBCT-----------TSSEEEEECCSSSSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCSSCEEEEEET
T ss_pred             EEEEEEEeC-----------CCCEEEEEEEcCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhcccccccccccC
Confidence            456667653           2358999998888999999999999999999999999999999865321           


Q ss_pred             ------cccc----------cCCCceeeEEEEeHhHHHhhcCChh
Q 030947          110 ------QLAE----------WPEKNVRSRKWMSVAEARKVCQHWW  138 (168)
Q Consensus       110 ------~~~~----------~~e~e~~~~~W~~~~e~~~~~~~~~  138 (168)
                            .+..          .++.+..++.|++++++.+++....
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~  119 (146)
T 2jvb_A           75 GKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSN  119 (146)
T ss_dssp             TEEEEEEEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGCSS
T ss_pred             CceEEEEEEEeccccccCCcCCcchhheeEEeEHHHHHhhhcccc
Confidence                  0000          0133667899999999999875543

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.70  E-value=1.3e-16  Score=117.89  Aligned_cols=82  Identities=22%  Similarity=0.280  Sum_probs=61.8

Q ss_pred             EEEEEEEeCC---CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc------------------------c----
Q 030947           64 EVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------------------------A----  112 (168)
Q Consensus        64 ~vLLv~r~~~---~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------------------------~----  112 (168)
                      +|||+++.+.   +.|.||||+++.||++.+||+||++||||+++.....+                        .    
T Consensus        20 ~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~   99 (153)
T 2b0v_A           20 KYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPD   99 (153)
T ss_dssp             EEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEECTT
T ss_pred             EEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCCCcEEEEEEEEEEeCCCCCC
Confidence            8999998764   48999999999999999999999999999986543300                        0    


Q ss_pred             ccCCCceeeEEEEeHhHHHhh---cCChhHHHHHHH
Q 030947          113 EWPEKNVRSRKWMSVAEARKV---CQHWWMKEALDR  145 (168)
Q Consensus       113 ~~~e~e~~~~~W~~~~e~~~~---~~~~~~~~~l~~  145 (168)
                      ...+.+..++.|++++++.++   ...+.++.++..
T Consensus       100 ~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~l~~  135 (153)
T 2b0v_A          100 RKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIED  135 (153)
T ss_dssp             SCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHHH
T ss_pred             CCCCCCeeeEEEecHHHHhhhhcccCcHHHHHHHHH
Confidence            012336678999999999995   344545555443

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.70  E-value=3.9e-17  Score=119.64  Aligned_cols=89  Identities=21%  Similarity=0.163  Sum_probs=69.8

Q ss_pred             eEEEEEEEeCC----CceeccceeccCCCCHHHHHHHHHHHHHcCccceecc----------------cc---------c
Q 030947           63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ----------------LA---------E  113 (168)
Q Consensus        63 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~----------------~~---------~  113 (168)
                      .+|||++|...    |.|.||||+++.||++.+||.||++||||+.+.....                ..         .
T Consensus        20 ~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (144)
T 3r03_A           20 GRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDTFHLLMPLYACRSWRGR   99 (144)
T ss_dssp             SCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSSEEEEEEEEECCCBSC
T ss_pred             CEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCCCeEEEEEEEEEEecCCc
Confidence            37999998753    7899999999999999999999999999998754420                00         0


Q ss_pred             cCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHh
Q 030947          114 WPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT  151 (168)
Q Consensus       114 ~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~  151 (168)
                      ....+..+++|++++++.++...+.++.+++.+.+...
T Consensus       100 ~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~  137 (144)
T 3r03_A          100 ATAREGQTLAWVRAERLREYPMPPADLPLIPILQDWLE  137 (144)
T ss_dssp             CCCCSSCEEEEECGGGGGGSCCCTTTTTHHHHHHHHC-
T ss_pred             cCCCCcceEEEEeHHHhccCCCCcchHHHHHHHhCccc
Confidence            12235678999999999999888888888877766544

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.70  E-value=9.1e-17  Score=118.44  Aligned_cols=88  Identities=24%  Similarity=0.231  Sum_probs=71.1

Q ss_pred             EEEEEEEeCC----CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-----------------------cccCC
Q 030947           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-----------------------AEWPE  116 (168)
Q Consensus        64 ~vLLv~r~~~----~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-----------------------~~~~e  116 (168)
                      +|||++|...    |.|.||||+++.||++.+||.||++||||+.+.....+                       .....
T Consensus        34 ~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (153)
T 3ees_A           34 KILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYGDVGILILFYEILYWKGEPRA  113 (153)
T ss_dssp             EEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEETTEEEEEEEEEECEEESCCCC
T ss_pred             EEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEEecCCCeEEEEEEEEEECCCCcCC
Confidence            8999998764    78999999999999999999999999999986544310                       01123


Q ss_pred             CceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHh
Q 030947          117 KNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT  151 (168)
Q Consensus       117 ~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~  151 (168)
                      .+..++.|++++++.++...+.++.++..+.+.+.
T Consensus       114 ~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~~  148 (153)
T 3ees_A          114 KHHMMLEWIHPEELKHRNIPEANRKILHKIYKALG  148 (153)
T ss_dssp             SSSSEEEEECGGGGGGSCCCHHHHTTHHHHHHHTT
T ss_pred             CccceEEEecHHHhhhCCCCcchHHHHHHHHHhhc
Confidence            35678999999999998888888888888776654

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.70  E-value=1.2e-16  Score=118.54  Aligned_cols=84  Identities=23%  Similarity=0.309  Sum_probs=61.7

Q ss_pred             EEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc---------------------------ccc
Q 030947           64 EVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL---------------------------AEW  114 (168)
Q Consensus        64 ~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~---------------------------~~~  114 (168)
                      +|||+++..  .+.|.||||+++.|||+.+||.||++||||+++.....+                           ...
T Consensus        17 ~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~   96 (153)
T 3shd_A           17 KFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQP   96 (153)
T ss_dssp             EEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTTSCCEEEEEEEEECSSCCCCCC
T ss_pred             EEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEecCCCceEEEEEEEEEccccCcCCC
Confidence            899999863  467999999999999999999999999999987544300                           001


Q ss_pred             CCCceeeEEEEeHhHHHhh--cCChhHHHHHHHHH
Q 030947          115 PEKNVRSRKWMSVAEARKV--CQHWWMKEALDRLV  147 (168)
Q Consensus       115 ~e~e~~~~~W~~~~e~~~~--~~~~~~~~~l~~~~  147 (168)
                      .+.|..++.|++++++...  ...+.....+..+.
T Consensus        97 ~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~~  131 (153)
T 3shd_A           97 HDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQ  131 (153)
T ss_dssp             CSTTCCEEEEECHHHHHTCSCBSSTHHHHHHHHHH
T ss_pred             CcccceeeEEecHHHhhccccccCchHHHHHHHHH
Confidence            2336778999999999332  24455555555443

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.70  E-value=1.7e-16  Score=118.31  Aligned_cols=102  Identities=21%  Similarity=0.298  Sum_probs=74.5

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeC-CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec-c----
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED-Q----  110 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~-~----  110 (168)
                      .++..+++++++.            +.+|||++|.. ++.|.+|||+++.|||+.+||+||++||||+.+.... .    
T Consensus        12 ~~~~~v~~~i~~~------------~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~   79 (165)
T 1f3y_A           12 GYRRNVGICLMNN------------DKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYW   79 (165)
T ss_dssp             SCCCEEEEEEECT------------TSCEEEEEETTEEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSC
T ss_pred             ceeeeEEEEEECC------------CCcEEEEecCCCCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccc
Confidence            5788889988863            23799999875 4799999999999999999999999999999853110 0    


Q ss_pred             ------------------------c-ccc------------------CCCceeeEEEEeHhHHHhhcCChhHHHHHHHHH
Q 030947          111 ------------------------L-AEW------------------PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV  147 (168)
Q Consensus       111 ------------------------~-~~~------------------~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~  147 (168)
                                              . ..|                  +..+..+++|++++++.+++... ....++++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~-~~~~~~~~~  158 (165)
T 1f3y_A           80 LTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEF-KKPVYKEVL  158 (165)
T ss_dssp             CBCCCCHHHHHHHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCGG-GHHHHHHHH
T ss_pred             eeeecCccccccccccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhhh-hHHHHHHHH
Confidence                                    0 000                  13367789999999999987432 344555555


Q ss_pred             HHHh
Q 030947          148 MRLT  151 (168)
Q Consensus       148 ~~~~  151 (168)
                      ..+.
T Consensus       159 ~~l~  162 (165)
T 1f3y_A          159 SVFA  162 (165)
T ss_dssp             HHHG
T ss_pred             HHhh
Confidence            5443

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.69  E-value=6.7e-17  Score=125.52  Aligned_cols=85  Identities=21%  Similarity=0.216  Sum_probs=67.8

Q ss_pred             EEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceecc------------------c-ccc----------
Q 030947           64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ------------------L-AEW----------  114 (168)
Q Consensus        64 ~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~------------------~-~~~----------  114 (168)
                      +|||+++...|.|.||||+++.||++.+||.||++||||+.+.....                  . ..|          
T Consensus        16 ~vLL~~r~~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~~~~~~~~   95 (188)
T 3fk9_A           16 QVLLLQKPRRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWMLFTFKATEHEGEML   95 (188)
T ss_dssp             EEEEEECTTTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEEEEEEEEESCEESCCC
T ss_pred             EEEEEEeCCCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEEEEEEEEEEECCCCCCc
Confidence            89999998889999999999999999999999999999998654330                  0 000          


Q ss_pred             CCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHH
Q 030947          115 PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM  148 (168)
Q Consensus       115 ~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~  148 (168)
                      +..+...++|+++++++++...+..+..+..+.+
T Consensus        96 ~~~e~~~~~W~~~~el~~~~l~~~~~~~l~~~l~  129 (188)
T 3fk9_A           96 KQSPEGKLEWKKKDEVLELPMAAGDKWIFKHVLH  129 (188)
T ss_dssp             SEETTEEEEEEEGGGGGGSCCCHHHHHHHHHHTT
T ss_pred             CCCCCEeEEEEEHHHhhhCCCCHHHHHHHHHHHc
Confidence            1224457999999999998888888777766544

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.69  E-value=2e-16  Score=119.07  Aligned_cols=82  Identities=22%  Similarity=0.190  Sum_probs=64.7

Q ss_pred             EEEEEEEeCC-----CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------------------------cc
Q 030947           64 EVLVISSQKG-----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-------------------------AE  113 (168)
Q Consensus        64 ~vLLv~r~~~-----~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-------------------------~~  113 (168)
                      +|||++|...     +.|.||||+++.||++.+||.||++||||+.+.....+                         ..
T Consensus        40 ~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (165)
T 3oga_A           40 CYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYADGRQEEIYMIYLI  119 (165)
T ss_dssp             EEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEEC--CCEEEEEEEEEE
T ss_pred             EEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEecCCCCceeEEEEEEE
Confidence            8999988742     78999999999999999999999999999986432200                         00


Q ss_pred             c----------CCCceeeEEEEeHhHHHhhcCChhHHHHHHH
Q 030947          114 W----------PEKNVRSRKWMSVAEARKVCQHWWMKEALDR  145 (168)
Q Consensus       114 ~----------~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~  145 (168)
                      |          +..|..+++|++++++.++...+..+.++..
T Consensus       120 ~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~  161 (165)
T 3oga_A          120 FDCVSANRDICINDEFQDYAWVKPEELALYDLNVATRHTLAL  161 (165)
T ss_dssp             EEEEESCCCCCCCTTEEEEEEECGGGGGGSCBCHHHHHHHHH
T ss_pred             EEeeccCCCccCCchheeeEEccHHHHhhCCCCHHHHHHHHH
Confidence            0          1236778999999999998888888777754

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.68  E-value=4.7e-17  Score=130.30  Aligned_cols=104  Identities=16%  Similarity=0.252  Sum_probs=75.6

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccccc
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAE  113 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~~  113 (168)
                      ..++.+++|++..+   +      ++.+|||+++..   .|.|.||||+++.|||+.+||.||++||||+.+...+++..
T Consensus        11 ~p~v~v~~vi~~~~---~------~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~   81 (226)
T 2fb1_A           11 TFYLGIDCIIFGFN---E------GEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGA   81 (226)
T ss_dssp             CEEEEEEEEEEEEE---T------TEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEE
T ss_pred             CCeEEEEEEEEEEe---C------CCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEE
Confidence            45788999999764   2      456999999975   47899999999999999999999999999998765442110


Q ss_pred             c--------------------C-------CCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHh
Q 030947          114 W--------------------P-------EKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT  151 (168)
Q Consensus       114 ~--------------------~-------e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~  151 (168)
                      +                    +       ..+..++.|+++++++++....  ..++..+..++.
T Consensus        82 ~~~~~r~~~~~~v~~~y~a~~~~~~~~~~~~e~~~~~W~~~~el~~l~~dh--~~il~~a~~rlr  144 (226)
T 2fb1_A           82 FGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPALIFDH--PEMVDKAREMMK  144 (226)
T ss_dssp             ECCTTSSSSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCCCBSTTH--HHHHHHHHHHHH
T ss_pred             eCCCCcCCCceEEEEEEEEEecCcccccCCccccceEEEEHHHhhhccCCH--HHHHHHHHHHHH
Confidence            0                    1       1144579999999998865432  344444444443

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.68  E-value=3.5e-17  Score=123.40  Aligned_cols=100  Identities=21%  Similarity=0.186  Sum_probs=75.1

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeCC---CceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc--
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA--  112 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~---~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~--  112 (168)
                      .+..+.+++++.           +..+|||++|.+.   |.|.||||+++.||++.+||.||++||||+.+.....+.  
T Consensus         9 ~~~~v~~vi~~~-----------~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~   77 (161)
T 3exq_A            9 VELVTMVMVTDP-----------ETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTC   77 (161)
T ss_dssp             EEEEEEEEEBCT-----------TTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEE
T ss_pred             ceEEEEEEEEeC-----------CCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEE
Confidence            455666666542           2358999998743   578899999999999999999999999999865444110  


Q ss_pred             -----------------------ccCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHH
Q 030947          113 -----------------------EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM  148 (168)
Q Consensus       113 -----------------------~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~  148 (168)
                                             .....+..+++|++++++.++...+.++.++..+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  136 (161)
T 3exq_A           78 EWFDDDRQHRKLGLLYRASNFTGTLKASAEGQLSWLPITALTRENSAASLPEFLQVFTG  136 (161)
T ss_dssp             EEECSSCSSEEEEEEEEECCEESCCCGGGTTTEEEECGGGCCTTTBCTTHHHHHHHHTT
T ss_pred             ecccCCCCeEEEEEEEEEeccCCccCCCccceEEEeeHHHhhhCccChHHHHHHHHHhh
Confidence                                   011224567999999999998888888888877665

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.68  E-value=2.9e-16  Score=114.28  Aligned_cols=87  Identities=22%  Similarity=0.187  Sum_probs=68.8

Q ss_pred             EEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--------------cc---------cCC
Q 030947           64 EVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--------------AE---------WPE  116 (168)
Q Consensus        64 ~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--------------~~---------~~e  116 (168)
                      +|||+++..    .|.|.||||+++.||++.+||.||++||||+.+.....+              ..         ...
T Consensus        21 ~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (140)
T 2rrk_A           21 KILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVSGRIIHLHAWHVPDFHGTLQA  100 (140)
T ss_dssp             EEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEEEETTEEEEEEEEEESEEEECCCC
T ss_pred             EEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEEecCCcEEEEEEEEEEeeCCCcCC
Confidence            899999864    389999999999999999999999999999986533300              00         122


Q ss_pred             CceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHH
Q 030947          117 KNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL  150 (168)
Q Consensus       117 ~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~  150 (168)
                      .+..++.|++++++.++...+.++.++..+.+..
T Consensus       101 ~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~r  134 (140)
T 2rrk_A          101 HEHQALVWCSPEEALQYPLAPADIPLLEAFMALR  134 (140)
T ss_dssp             SSCSCEEEECHHHHTTSCCCTTHHHHHHHHHHHH
T ss_pred             CccceeEEeCHHHHhhCCCChhHHHHHHHHHHHh
Confidence            3456789999999999888888888888877653

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.68  E-value=1.5e-16  Score=122.09  Aligned_cols=86  Identities=17%  Similarity=0.033  Sum_probs=67.0

Q ss_pred             eEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc----------------c---------cc
Q 030947           63 LEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL----------------A---------EW  114 (168)
Q Consensus        63 ~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~----------------~---------~~  114 (168)
                      .+|||+++.+   .+.|.||||+++.||++.+||.||++||||+.+.....+                .         ..
T Consensus        36 ~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~  115 (176)
T 3q93_A           36 QRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTP  115 (176)
T ss_dssp             SEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCSCEEEEEEEEESCEESCC
T ss_pred             CEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCCcEEEEEEEEEECCCCCc
Confidence            3899998865   488999999999999999999999999999987544310                0         00


Q ss_pred             CCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHH
Q 030947          115 PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM  148 (168)
Q Consensus       115 ~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~  148 (168)
                      ...+..+.+|+++++++.+...+..+..+..+.+
T Consensus       116 ~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  149 (176)
T 3q93_A          116 VESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQ  149 (176)
T ss_dssp             CCCSSEEEEEEETTCCCGGGBCTTHHHHHHHHHT
T ss_pred             CCCcceeeEEeeHHHccccccCcchHHHHHHHHc
Confidence            1225567899999999988877877777766544

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.67  E-value=4.7e-16  Score=115.75  Aligned_cols=96  Identities=16%  Similarity=0.126  Sum_probs=71.0

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccc--eec---
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI--VED---  109 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~--~~~---  109 (168)
                      .+..+++++++.            +.+|||+++.+   .+.|.||||+++.||++.+||.||++||||+.+.  ...   
T Consensus        17 ~~~~v~~vi~~~------------~~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~   84 (160)
T 1rya_A           17 PLVSLDFIVENS------------RGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYG   84 (160)
T ss_dssp             CEEEEEEEEECT------------TSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEE
T ss_pred             cEEEEEEEEEcC------------CCEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEE
Confidence            456778888753            23799999986   5789999999999999999999999999999842  111   


Q ss_pred             ---c-cc----------c----------------cCCCceeeEEEEeHhHHHhhc-CChhHHHHHHH
Q 030947          110 ---Q-LA----------E----------------WPEKNVRSRKWMSVAEARKVC-QHWWMKEALDR  145 (168)
Q Consensus       110 ---~-~~----------~----------------~~e~e~~~~~W~~~~e~~~~~-~~~~~~~~l~~  145 (168)
                         . ..          .                .+..+..+++|++++++.++. .++..++++..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~l~~  151 (160)
T 1rya_A           85 VWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFLA  151 (160)
T ss_dssp             EEEEEESSBTTBSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHCTTBCHHHHGGGCH
T ss_pred             EEeEEEcccccCCCcCcEEEEEEEEEEcCccccccCCCccceEEEecHHHHhhccccCHHHHHHHHH
Confidence               0 00          0                012367789999999999974 56666555543

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.67  E-value=7.4e-16  Score=117.42  Aligned_cols=104  Identities=22%  Similarity=0.173  Sum_probs=73.3

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceec-cceeccCCCCHHHHHHHHHHHHHcCccceeccc
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVEDQL  111 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~l-PgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~  111 (168)
                      .+..+++++++.            +.+|||.+|..     +|.|.| |||+++.||++.+||.||++||||+.+.....+
T Consensus        36 ~~~~~~v~i~~~------------~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l  103 (180)
T 2fkb_A           36 RHRATYIVVHDG------------MGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEH  103 (180)
T ss_dssp             CEEEEEEEEECS------------SSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEE
T ss_pred             eeeEEEEEEECC------------CCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEE
Confidence            345566666643            23799988864     367999 999999999999999999999999975332200


Q ss_pred             --------------cc----------cCCCceeeEEEEeHhHHHhhc--CChhHHHHHHHHHHHHhcc
Q 030947          112 --------------AE----------WPEKNVRSRKWMSVAEARKVC--QHWWMKEALDRLVMRLTSQ  153 (168)
Q Consensus       112 --------------~~----------~~e~e~~~~~W~~~~e~~~~~--~~~~~~~~l~~~~~~~~~~  153 (168)
                                    ..          .+..+..++.|++++++.+++  ..+....++..+.......
T Consensus       104 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~~~~~~~~  171 (180)
T 2fkb_A          104 GQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMKRNAKN  171 (180)
T ss_dssp             EEEEEEETTEEEEEEEEEEECCCCCCCCTTTEEEEEEECHHHHHTTGGGBCHHHHHHHHHHHHHC---
T ss_pred             EEEEecCCCceEEEEEEEEecCCCcCCChhHhheEEEecHHHHHHHHHHhCCcHHHHHHHHHHhhcCC
Confidence                          00          123467789999999999984  3566777777766554443

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.67  E-value=5.3e-16  Score=117.78  Aligned_cols=58  Identities=29%  Similarity=0.389  Sum_probs=51.0

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccc
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI  106 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~  106 (168)
                      .++..+++++++.+            .+|||+++...+.|.+|||+++.|||+.+||.||++||||+.+.
T Consensus         6 ~~~~~v~~~i~~~~------------~~vLl~~r~~~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~   63 (164)
T 2kdv_A            6 GYRPNVGIVICNRQ------------GQVMWARRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRK   63 (164)
T ss_dssp             SEEEEEEEEEECTT------------SEEEEEEETTCCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGG
T ss_pred             CCCcEEEEEEEccC------------CEEEEEEEcCCCeEECCeeecCCCCCHHHHHHHHHHHHHCCCcc
Confidence            46778888888642            38999998888899999999999999999999999999999764

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.67  E-value=1.2e-15  Score=113.12  Aligned_cols=84  Identities=23%  Similarity=0.207  Sum_probs=60.3

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeCC----CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc----
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL----  111 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~----~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~----  111 (168)
                      ..+++++++.            +.+|||+++++.    +.|.||||++++|||+.+||.||++||||+.+.....+    
T Consensus         6 ~~v~vi~~~~------------~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~   73 (145)
T 2w4e_A            6 RAVFILPVTA------------QGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFY   73 (145)
T ss_dssp             EEEEEEEEET------------TSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBB
T ss_pred             CEEEEEEEcC------------CCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecCc
Confidence            3566777653            237888876532    37999999999999999999999999999986533300    


Q ss_pred             ---------------c-------ccCCCceeeEEEEeHhHHHhhcC
Q 030947          112 ---------------A-------EWPEKNVRSRKWMSVAEARKVCQ  135 (168)
Q Consensus       112 ---------------~-------~~~e~e~~~~~W~~~~e~~~~~~  135 (168)
                                     .       ..++.|..++.|++++++.+++.
T Consensus        74 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~  119 (145)
T 2w4e_A           74 PQPSISGVVFYPLLALGVTLGAAQLEDTETIERVVLPLAEVYRMLE  119 (145)
T ss_dssp             SCTTTCCCEEEEEEEEEEEEC--------CEEEEEEEHHHHHHHHH
T ss_pred             CCCCccCceEEEEEEEecccCCCCCCCCCeEEEEEEeHHHHHHHHH
Confidence                           0       01223567899999999998764

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.66  E-value=3e-16  Score=119.58  Aligned_cols=86  Identities=22%  Similarity=0.164  Sum_probs=63.2

Q ss_pred             EEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccccc--------------c-----CCCceeeEEE
Q 030947           64 EVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAE--------------W-----PEKNVRSRKW  124 (168)
Q Consensus        64 ~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~~--------------~-----~e~e~~~~~W  124 (168)
                      ++||++++ .|.|.||||+++.|||+.+||.||++||||+.+.....+..              +     +..|..+++|
T Consensus        28 ~vLL~~r~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~f~~~~~~~~~~~~E~~~~~W  106 (163)
T 3f13_A           28 GVLVTASR-GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITPFNAHKVYLCIAQGQPKPQNEIERIAL  106 (163)
T ss_dssp             EEEEEECC----BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECSSEEEEEEEEEC-CCCCCCTTCCEEEE
T ss_pred             EEEEEEEC-CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEecCCeEEEEEEEEECCcCccCCCceEEEE
Confidence            79999876 58999999999999999999999999999999765552111              1     2226678999


Q ss_pred             EeHhHHHhhcCChhHHHHHHHHHHHHh
Q 030947          125 MSVAEARKVCQHWWMKEALDRLVMRLT  151 (168)
Q Consensus       125 ~~~~e~~~~~~~~~~~~~l~~~~~~~~  151 (168)
                      |+ .+.......+..+.++..+.....
T Consensus       107 ~~-~~~~~~~l~~~~~~il~~~~~~~~  132 (163)
T 3f13_A          107 VS-SPDTDMDLFVEGRAILRRYARLRN  132 (163)
T ss_dssp             ES-STTCSSCBCHHHHHHHHHHHHHTT
T ss_pred             EC-cccccCCCCHHHHHHHHHHHHhhh
Confidence            99 445555566777788877766543

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.66  E-value=1.4e-16  Score=118.43  Aligned_cols=87  Identities=15%  Similarity=0.188  Sum_probs=65.7

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-----
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-----  111 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-----  111 (168)
                      .++..+++++++.             .+|||+++  .+.|.||||+++.||++.+||.||++||||+.+.....+     
T Consensus        17 ~~~~~~~~ii~~~-------------~~vLl~~r--~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~   81 (154)
T 2pqv_A           17 VFGVRATALIVQN-------------HKLLVTKD--KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVEN   81 (154)
T ss_dssp             EEEEEEEECCEET-------------TEEEEEEE--TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEE
T ss_pred             eEeEEEEEEEEEC-------------CEEEEEec--CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEee
Confidence            4566777777752             27999998  789999999999999999999999999999986533300     


Q ss_pred             ---------c----cc-------------CCCceeeEEEEeHhHHHhhcCChh
Q 030947          112 ---------A----EW-------------PEKNVRSRKWMSVAEARKVCQHWW  138 (168)
Q Consensus       112 ---------~----~~-------------~e~e~~~~~W~~~~e~~~~~~~~~  138 (168)
                               .    .|             ++.+..++.|++++++.++...+.
T Consensus        82 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~  134 (154)
T 2pqv_A           82 RFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNIQLVPV  134 (154)
T ss_dssp             EEEETTEEEEEEEEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGGSCEEST
T ss_pred             eecCCCCcceEEEEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhhcCcCcH
Confidence                     0    00             122356799999999999754443

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.66  E-value=7.2e-16  Score=114.63  Aligned_cols=88  Identities=18%  Similarity=0.211  Sum_probs=66.1

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeC-------CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecc
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-------GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ  110 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-------~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~  110 (168)
                      .+..+++++++.            +.+|||+++..       .+.|.||||+++.||++.+||.||++||||+.+.....
T Consensus        12 ~~~~~~~vi~~~------------~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~   79 (159)
T 1sjy_A           12 ELRAAGVVLLNE------------RGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKF   79 (159)
T ss_dssp             CEEEEEEEEBCT------------TCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEE
T ss_pred             EEEeEEEEEEeC------------CCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEE
Confidence            455667777653            23799999873       37899999999999999999999999999998643320


Q ss_pred             c-----------------------c-c-c---CCCceeeEEEEeHhHHHhhcCCh
Q 030947          111 L-----------------------A-E-W---PEKNVRSRKWMSVAEARKVCQHW  137 (168)
Q Consensus       111 ~-----------------------~-~-~---~e~e~~~~~W~~~~e~~~~~~~~  137 (168)
                      +                       . . .   +..|..++.|++++++.+++...
T Consensus        80 l~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~  134 (159)
T 1sjy_A           80 LGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAAG  134 (159)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHTT
T ss_pred             EEEEecccCCCceEEEEEEEEEccCCCccccCCCCceeEEEEecHHHHHHhhhcc
Confidence            0                       0 0 0   23366789999999999986544

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.63  E-value=2.6e-15  Score=115.93  Aligned_cols=100  Identities=16%  Similarity=0.099  Sum_probs=72.4

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceec-cceeccCCCCHHHHHHHHHHHHHcCcccee-cc
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVE-DQ  110 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~l-PgG~ve~gEt~~~aA~REl~EEtGi~~~~~-~~  110 (168)
                      .+..+++++++.            +.+|||++|..     +|.|.| |||+++.|||+.+||.||++||||+.+... ..
T Consensus        31 ~~~~v~~~i~~~------------~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~   98 (190)
T 1hzt_A           31 LHLAFSSWLFNA------------KGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESI   98 (190)
T ss_dssp             CEECEEEEEECT------------TCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEE
T ss_pred             eEEEEEEEEEcC------------CCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhhee
Confidence            345677777753            23799999864     488999 999999999999999999999999987554 20


Q ss_pred             ---c----------------cc----------cCCCceeeEEEEeHhHHHhhc------CChhHHHHHHHHHHH
Q 030947          111 ---L----------------AE----------WPEKNVRSRKWMSVAEARKVC------QHWWMKEALDRLVMR  149 (168)
Q Consensus       111 ---~----------------~~----------~~e~e~~~~~W~~~~e~~~~~------~~~~~~~~l~~~~~~  149 (168)
                         +                ..          .+..|..+++|++++++.+++      ..+.++.++..+.++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~p~~~~~~~~~~~~  172 (190)
T 1hzt_A           99 YPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGIDATPWAFSPWMVMQATNREAR  172 (190)
T ss_dssp             ETTCEEEEECTTSCEEEEECCEEEEEBCSCCCCCTTTEEEEEEECHHHHHHHHHHCGGGBCHHHHHHHHSHHHH
T ss_pred             eeeEEEEeeCCCCCcceEEEEEEEEecCCCCcCCccceeeEEEecHHHHHHHHHcChhhcCchHHHHHHHHHHH
Confidence               0                00          023367789999999999874      345555555555444

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.63  E-value=5.3e-16  Score=118.76  Aligned_cols=75  Identities=19%  Similarity=0.120  Sum_probs=58.8

Q ss_pred             eEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------------------cc------
Q 030947           63 LEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-------------------AE------  113 (168)
Q Consensus        63 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-------------------~~------  113 (168)
                      .+|||+++.+    .+.|.||||+++.|||+.+||.||++||||+.+.....+                   ..      
T Consensus        53 ~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~  132 (182)
T 2yvp_A           53 GTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVVFHPFLALKARVVTP  132 (182)
T ss_dssp             SEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCTTTBCCEEEEEEECSCEECSC
T ss_pred             CEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCCCCccccEEEEEEEeccccCCC
Confidence            3799998863    468999999999999999999999999999986543300                   00      


Q ss_pred             --cCCCceeeEEEEeHhHHHhhcCCh
Q 030947          114 --WPEKNVRSRKWMSVAEARKVCQHW  137 (168)
Q Consensus       114 --~~e~e~~~~~W~~~~e~~~~~~~~  137 (168)
                        .+..|..++.|++++++.+++..+
T Consensus       133 ~~~~~~E~~~~~W~~~~el~~~~~~~  158 (182)
T 2yvp_A          133 PTLEEGELLESLELPLTEVYALLAKG  158 (182)
T ss_dssp             CCCCTTCCEEEEEEEHHHHHHHHHTT
T ss_pred             CCCCCCceEEEEEEEHHHHHHHHHcC
Confidence              123366789999999999986544

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.62  E-value=1.6e-15  Score=126.13  Aligned_cols=99  Identities=18%  Similarity=0.117  Sum_probs=70.8

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec-----
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED-----  109 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~-----  109 (168)
                      .+..+++++++.             ++|||+++.+   .|.|.||||+++.|||+.+||.||++||||+++....     
T Consensus       202 ~~~~v~~vi~~~-------------~~vLL~~r~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~  268 (341)
T 2qjo_A          202 TFITTDAVVVQA-------------GHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSI  268 (341)
T ss_dssp             CEEEEEEEEEET-------------TEEEEEECCSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTE
T ss_pred             CceEEEEEEEeC-------------CEEEEEEecCCCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccc
Confidence            356777888742             2899999875   5789999999999999999999999999999865211     


Q ss_pred             ----c-------------cc---------c----cCCCceeeEEEEeHhHHHhh--cCChhHHHHHHHHHHH
Q 030947          110 ----Q-------------LA---------E----WPEKNVRSRKWMSVAEARKV--CQHWWMKEALDRLVMR  149 (168)
Q Consensus       110 ----~-------------~~---------~----~~e~e~~~~~W~~~~e~~~~--~~~~~~~~~l~~~~~~  149 (168)
                          .             ..         .    .++.|..+++|++++++.++  ...+..+.++..+.+.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~il~~~~~~  340 (341)
T 2qjo_A          269 VDSHVFDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEEQIYEDHFQIIQHFVSK  340 (341)
T ss_dssp             EEEEEECCTTSCTTSCEEEEEEEEECCSSSCCCCC------CEEEEEHHHHHHTGGGBCTTHHHHHHHHC--
T ss_pred             cceEEEeCCCCCCCCcEEEEEEEEEecCCCcCccCCCCceeeEEEeeHHHHhhhhhhhchHHHHHHHHHHhc
Confidence                0             00         0    01235667999999999997  5667777777766543

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.61  E-value=1.9e-15  Score=116.88  Aligned_cols=89  Identities=20%  Similarity=0.175  Sum_probs=65.2

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecc-
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ-  110 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~-  110 (168)
                      ..+..+++++++.+          ++.+|||++|..     .+.|.||||+++.||++.+||.||++||||+++..... 
T Consensus        32 ~~~~~~~~v~i~~~----------~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l  101 (194)
T 1nqz_A           32 HYRRAAVLVALTRE----------ADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLL  101 (194)
T ss_dssp             -CEEEEEEEEEESS----------SSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEE
T ss_pred             CCceEEEEEEEecC----------CCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEE
Confidence            34556666776432          334899999864     48899999999999999999999999999998654330 


Q ss_pred             --------------------c------cccCCCceeeEEEEeHhHH-HhhcC
Q 030947          111 --------------------L------AEWPEKNVRSRKWMSVAEA-RKVCQ  135 (168)
Q Consensus       111 --------------------~------~~~~e~e~~~~~W~~~~e~-~~~~~  135 (168)
                                          .      ...+..|..++.|++++++ .+...
T Consensus       102 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~  153 (194)
T 1nqz_A          102 GELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVPLV  153 (194)
T ss_dssp             EECCCEEETTTEEEEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHSCCE
T ss_pred             EEccCccCCCCeEEEEEEEEecCCccccCCCccceeEEEEEEHHHhccCCCc
Confidence                                0      0112346778999999999 77543

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.61  E-value=1.6e-15  Score=112.58  Aligned_cols=101  Identities=17%  Similarity=0.234  Sum_probs=70.1

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeCC--CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc----
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG--KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL----  111 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~--~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~----  111 (168)
                      .+..+++++++.+   .      ++..|||++|...  ..|.||||+++.|||+.+||.||++||||+.+.....+    
T Consensus         7 ~~~~~~~ii~~~~---~------~~~~vLl~~r~~~~~~gw~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~   77 (155)
T 2b06_A            7 TILTNICLIEDLE---T------QRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKN   77 (155)
T ss_dssp             EEEEEEEEEEETT---T------TEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEE
T ss_pred             cEEEEEEEEEECC---C------CeEEEEEEECCCCCCCCEeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEe
Confidence            4567777777632   0      2234888877643  23899999999999999999999999999986533300    


Q ss_pred             -----------c---------ccCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHH
Q 030947          112 -----------A---------EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV  147 (168)
Q Consensus       112 -----------~---------~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~  147 (168)
                                 .         .....+..+++|++++++.++...+.++.++..+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~  133 (155)
T 2b06_A           78 WPLDTGGRYIVICYKATEFSGTLQSSEEGEVSWVQKDQIPNLNLAYDMLPLMEMME  133 (155)
T ss_dssp             EECTTSCEEEEEEEEECEEEECCCCBTTBEEEEEEGGGGGGSCBCTTHHHHHHHHH
T ss_pred             eccCCCceEEEEEEEEEecCCCCCCCcceeeEEeeHHHhhhCCCChhHHHHHHHHh
Confidence                       0         01123566799999999999887777777776554

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.61  E-value=2.9e-16  Score=112.59  Aligned_cols=84  Identities=23%  Similarity=0.281  Sum_probs=64.9

Q ss_pred             eEEEEEEEeCC----CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--------------ccc---------C
Q 030947           63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--------------AEW---------P  115 (168)
Q Consensus        63 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--------------~~~---------~  115 (168)
                      ++|||++|...    |.|.||||+++.||++.+||.||++||||+.+.....+              ..|         .
T Consensus        16 ~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (129)
T 1mut_A           16 NEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWLVERWEGEPW   95 (129)
T ss_dssp             TEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCCCSSCEEECCCEEEEECSSCCC
T ss_pred             CEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEEEecCCceEEEEEEEEEccCCccC
Confidence            48999998754    88999999999999999999999999999987544311              000         1


Q ss_pred             CCceeeEEEEeHhHHHhhcCChhHHHHHHHH
Q 030947          116 EKNVRSRKWMSVAEARKVCQHWWMKEALDRL  146 (168)
Q Consensus       116 e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~  146 (168)
                      ..+..++.|++++++.++...+.++.+++.+
T Consensus        96 ~~e~~~~~W~~~~el~~~~~~~~~~~~l~~l  126 (129)
T 1mut_A           96 GKEGQPGEWMSLVGLNADDFPPANEPVIAKL  126 (129)
T ss_dssp             CCSSCCCEEEESSSCCTTTSCTTCHHHHHHH
T ss_pred             CcccceeEEeCHHHcccccCCchhHHHHHHH
Confidence            2255678999999999987777666666553

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.61  E-value=4.1e-15  Score=122.12  Aligned_cols=90  Identities=23%  Similarity=0.340  Sum_probs=66.7

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccce--eccc
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIV--EDQL  111 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~--~~~~  111 (168)
                      ...+.+++|++..+   ++    .++.+|||++|..   .|.|.||||+++.||++.+||.||++||||+++..  +.++
T Consensus        37 ~p~v~v~~vv~~~~---~~----~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~l  109 (273)
T 2fml_A           37 KPSLTVDMVLLCYN---KE----ADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQL  109 (273)
T ss_dssp             CCEEEEEEEEEEEE---TT----TTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEE
T ss_pred             CCceEEEEEEEEEc---CC----CCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEEE
Confidence            45788999999875   10    0156999999975   47899999999999999999999999999975332  2100


Q ss_pred             c--------------------------ccCCCceeeEEEEeHhHHHhh
Q 030947          112 A--------------------------EWPEKNVRSRKWMSVAEARKV  133 (168)
Q Consensus       112 ~--------------------------~~~e~e~~~~~W~~~~e~~~~  133 (168)
                      .                          ..+..+..++.|++++++.+.
T Consensus       110 ~~~~~~~r~~~~~~~~~~y~a~~~~~~~~~~~E~~~~~W~~~~e~~~~  157 (273)
T 2fml_A          110 HSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQH  157 (273)
T ss_dssp             EEECCTTSSTTSSEEEEEEEEECCCCCCCCCTTEEEEEEEEEEEETTE
T ss_pred             EEEcCCCCCCCceEEEEEEEEEeCCCCCCCCcceeeEEEEEhhHhhhh
Confidence            0                          012346778999999986543

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.60  E-value=4.2e-15  Score=124.47  Aligned_cols=99  Identities=18%  Similarity=0.212  Sum_probs=76.1

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec------
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED------  109 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~------  109 (168)
                      +..+++++++.             .+|||+++..   .+.|.||||+++.|||+.+||.||++||||+++....      
T Consensus       208 ~~~v~~vv~~~-------------~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~  274 (352)
T 2qjt_B          208 FVTVDALVIVN-------------DHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKR  274 (352)
T ss_dssp             EEEEEEEEEET-------------TEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEE
T ss_pred             ceEEEEEEEEC-------------CEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceee
Confidence            46677777742             2899999875   3789999999999999999999999999999865210      


Q ss_pred             ------c---------c----------cc-----cCCCceeeEEEEeH-hHHHhh--cCChhHHHHHHHHHHHH
Q 030947          110 ------Q---------L----------AE-----WPEKNVRSRKWMSV-AEARKV--CQHWWMKEALDRLVMRL  150 (168)
Q Consensus       110 ------~---------~----------~~-----~~e~e~~~~~W~~~-~e~~~~--~~~~~~~~~l~~~~~~~  150 (168)
                            .         .          ..     .++.|..+++|+++ +++.++  ...+..+.++..+.+++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~~~~~~~~~~~il~~~~~~l  348 (352)
T 2qjt_B          275 CEKVFDYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNICDRMLEDHYQIITILLEEC  348 (352)
T ss_dssp             EEEEECCTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHTTTSBSTTHHHHHHHHHHHT
T ss_pred             eeEEecCCCCCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhhhhhhChhHHHHHHHHHHHh
Confidence                  0         0          00     01246778999999 999996  56777888888887765

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.59  E-value=2.9e-15  Score=117.38  Aligned_cols=76  Identities=24%  Similarity=0.129  Sum_probs=59.1

Q ss_pred             EEEEEEEeCC----CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--------------c------------c
Q 030947           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--------------A------------E  113 (168)
Q Consensus        64 ~vLLv~r~~~----~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--------------~------------~  113 (168)
                      +|||+++.+.    +.|.||||++++||++.+||+||++||||+.+.....+              .            .
T Consensus        61 ~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~a~~~~~~~~~  140 (198)
T 1vhz_A           61 HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLE  140 (198)
T ss_dssp             EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEEEEEEEEEEEECCCC
T ss_pred             EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCccCcEEEEEEEEeCCcccCC
Confidence            8999987643    47999999999999999999999999999987544310              0            0


Q ss_pred             cCCCceeeEEEEeHhHHHhhcCChhH
Q 030947          114 WPEKNVRSRKWMSVAEARKVCQHWWM  139 (168)
Q Consensus       114 ~~e~e~~~~~W~~~~e~~~~~~~~~~  139 (168)
                      .++.|..++.|++++++.+++..+.+
T Consensus       141 ~~~~E~~~~~w~~~~el~~~~~~~~i  166 (198)
T 1vhz_A          141 GDEPEPLPQVRWPLAHMMDLLEDPDF  166 (198)
T ss_dssp             CCCSSCCCEEEEEGGGGGGGGGCTTT
T ss_pred             CCCCceEEEEEEEHHHHHHHHHcCCC
Confidence            12335667899999999998865543

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.59  E-value=5.3e-15  Score=121.76  Aligned_cols=90  Identities=14%  Similarity=0.149  Sum_probs=69.3

Q ss_pred             eEEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc-----------------------ccCCC
Q 030947           63 LEVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA-----------------------EWPEK  117 (168)
Q Consensus        63 ~~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~-----------------------~~~e~  117 (168)
                      .+|||+++..  .|.|.||||+++.|||+++||.||++||||+++.....+.                       .....
T Consensus       151 ~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~~~~~~~~~~f~a~~~~~~~~~~~~  230 (269)
T 1vk6_A          151 DSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDPK  230 (269)
T ss_dssp             TEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEEEEEEECCCCCCTT
T ss_pred             CEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEecCCCCEEEEEEEEEECCCCcCCCCc
Confidence            3899999875  4789999999999999999999999999999876444110                       01234


Q ss_pred             ceeeEEEEeHhHHHhhcCChhHH-HHHHHHHHHHhc
Q 030947          118 NVRSRKWMSVAEARKVCQHWWMK-EALDRLVMRLTS  152 (168)
Q Consensus       118 e~~~~~W~~~~e~~~~~~~~~~~-~~l~~~~~~~~~  152 (168)
                      |..+++||++++++.+.....+. .++..+.+.+.+
T Consensus       231 E~~~~~W~~~~el~~l~~~~si~~~li~~~l~~~r~  266 (269)
T 1vk6_A          231 ELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCRA  266 (269)
T ss_dssp             TEEEEEEEETTSCCSCCCTTSHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEEHHHhhhcccCcHHHHHHHHHHHHHHHh
Confidence            77889999999999876655444 566666666654

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.59  E-value=2.6e-15  Score=123.46  Aligned_cols=86  Identities=23%  Similarity=0.343  Sum_probs=63.0

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeC-CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecc--------
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ--------  110 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~--------  110 (168)
                      .++++|+++.           ++++|||+++.+ ++.|.+|||+++.|||+.+||+||++||||+++.....        
T Consensus       102 ~~v~avv~~~-----------~~~~vLLv~r~~~~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l~~~~~~~~~~  170 (271)
T 2a6t_A          102 PVRGAIMLDM-----------SMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMT  170 (271)
T ss_dssp             CEEEEEEBCS-----------SSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEE
T ss_pred             CeEEEEEEEC-----------CCCEEEEEEEeCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCceeeeeeeeeccCC
Confidence            4567888764           234899999875 57899999999999999999999999999998653220        


Q ss_pred             -----c-----cc---------cCCCceeeEEEEeHhHHHhhcCC
Q 030947          111 -----L-----AE---------WPEKNVRSRKWMSVAEARKVCQH  136 (168)
Q Consensus       111 -----~-----~~---------~~e~e~~~~~W~~~~e~~~~~~~  136 (168)
                           .     ..         ..+.|..++.|++++++.++...
T Consensus       171 ~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~  215 (271)
T 2a6t_A          171 IRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKN  215 (271)
T ss_dssp             ETTEEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC--
T ss_pred             cCCceEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHHHhc
Confidence                 0     00         01236778999999999886543

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.58  E-value=3.2e-15  Score=113.37  Aligned_cols=87  Identities=25%  Similarity=0.211  Sum_probs=62.7

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc---
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL---  111 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~---  111 (168)
                      +..+++++++ +   +         +|||+++.+    .+.|.||||+++.|||+.+||.||++||||+ +.....+   
T Consensus        34 ~~~v~vii~~-~---~---------~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~   99 (170)
T 1v8y_A           34 KPAVAVIALR-E---G---------RMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSY   99 (170)
T ss_dssp             CCEEEEEEEE-T---T---------EEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEE
T ss_pred             CCeEEEEEEE-C---C---------EEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEE
Confidence            3567777776 3   1         799998753    3689999999999999999999999999999 6543310   


Q ss_pred             -----------cc------------cCCCceeeEEEEeHhHHHhhcCChhH
Q 030947          112 -----------AE------------WPEKNVRSRKWMSVAEARKVCQHWWM  139 (168)
Q Consensus       112 -----------~~------------~~e~e~~~~~W~~~~e~~~~~~~~~~  139 (168)
                                 ..            .++.|..++.|++++++.+++..+.+
T Consensus       100 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~  150 (170)
T 1v8y_A          100 FVSPGFTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQRGEV  150 (170)
T ss_dssp             ESCTTTBCCEEEEEEEEEEEECC--------CEEEEECHHHHHHHHHTTSC
T ss_pred             ecCCCccccEEEEEEEEeccccCCCCCCCceEEEEEEEHHHHHHHHHCCCE
Confidence                       00            01336678999999999998644433

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.57  E-value=6.6e-15  Score=111.26  Aligned_cols=100  Identities=12%  Similarity=0.067  Sum_probs=69.3

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCcee-ccceeccCCCCHHHHHHHHHHHHHcCcccee--c-
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVE--D-  109 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~-lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~--~-  109 (168)
                      +..+++++++.+            .+|||++|..     .|.|. ||||+++.|||+.+||.||++||||+.+...  . 
T Consensus        34 ~~~v~v~i~~~~------------~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~  101 (171)
T 1q27_A           34 VRVVNAFLRNSQ------------GQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRP  101 (171)
T ss_dssp             CEEEEEEEEETT------------TEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEE
T ss_pred             ceEEEEEEECCC------------CeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEE
Confidence            556777777532            3899998753     47898 9999999999999999999999999986542  1 


Q ss_pred             --ccc-----------c----------cCCCceeeEEEEeHhHHHhhcC--ChhHHHHHHHHHHHH
Q 030947          110 --QLA-----------E----------WPEKNVRSRKWMSVAEARKVCQ--HWWMKEALDRLVMRL  150 (168)
Q Consensus       110 --~~~-----------~----------~~e~e~~~~~W~~~~e~~~~~~--~~~~~~~l~~~~~~~  150 (168)
                        .+.           .          .+..+..+++|++++++.++..  .......+..+...+
T Consensus       102 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~l~~~~  167 (171)
T 1q27_A          102 LASFSPFQTTLSSFMCVYELRSDATPIFNPNDISGGEWLTPEHLLARIAAGEAAKGDLAELVRRCY  167 (171)
T ss_dssp             EEEECSSSSCCSSEEEEEEEECCCCCCSCTTTCSCCEEECHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             EEEEeccCCCCccEEEEEEEEECCccccCchhhheEEEecHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence              000           0          0123566899999999997532  223344555554444

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.57  E-value=6e-15  Score=114.71  Aligned_cols=88  Identities=17%  Similarity=0.135  Sum_probs=63.4

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEe----------CCCceeccceeccCCCCHHHHHHHHHHHHHcCccceec
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQ----------KGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED  109 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~----------~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~  109 (168)
                      ..++++++..           ++.++||+++.          ..+.|.||||+++ ||++.+||+||++||||+.+....
T Consensus        46 ~av~v~~~~~-----------~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~  113 (191)
T 3o6z_A           46 NGATILLYNT-----------KKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVR  113 (191)
T ss_dssp             CEEEEEEEET-----------TTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEE
T ss_pred             CEEEEEEEEC-----------CCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEE
Confidence            4566666653           23489999886          4467999999999 999999999999999999875333


Q ss_pred             cc------------------ccc-----------CCCceeeEEEEeHhHHHhhcCChhH
Q 030947          110 QL------------------AEW-----------PEKNVRSRKWMSVAEARKVCQHWWM  139 (168)
Q Consensus       110 ~~------------------~~~-----------~e~e~~~~~W~~~~e~~~~~~~~~~  139 (168)
                      .+                  ...           .+.|..++.|++++++.+++....+
T Consensus       114 ~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~i  172 (191)
T 3o6z_A          114 KLFELYMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEAIEVLELPFSQALEMIKTGEI  172 (191)
T ss_dssp             EEEEEESCTTTBCCEEEEEEEECCTTCC--------CCSSEEEEEEHHHHHHHHHHSSC
T ss_pred             EEEEEEeCCCccCcEEEEEEEEEcccccccCCCCCCCcEEEEEEEEHHHHHHHHHcCCC
Confidence            00                  000           1336678999999999998754333

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.55  E-value=4.5e-14  Score=105.17  Aligned_cols=87  Identities=18%  Similarity=0.248  Sum_probs=64.7

Q ss_pred             ceEEEEEEEeCC----CceeccceeccCCCCHH-HHHHHHHHHHHc-Cccceecc--------------cccc----C--
Q 030947           62 DLEVLVISSQKG----KGMLFPKGGWEIDESIQ-EAALRETIEEAG-VTGIVEDQ--------------LAEW----P--  115 (168)
Q Consensus        62 ~~~vLLv~r~~~----~~W~lPgG~ve~gEt~~-~aA~REl~EEtG-i~~~~~~~--------------~~~~----~--  115 (168)
                      +.+|||++|...    |.|.||||+++.||++. +||.||++|||| +.+.....              +..|    .  
T Consensus        33 ~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  112 (155)
T 1x51_A           33 GAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSHIKLTYQVYGLALEGQ  112 (155)
T ss_dssp             SEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSSCEEEEEEEEEECSSC
T ss_pred             CCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceEEEecCCccEEEEEEEEEEcCC
Confidence            358999998753    78999999999999996 999999999999 76532220              0001    1  


Q ss_pred             ---CCceeeEEEEeHhHHHhhcCChhHHHHHHHHHH
Q 030947          116 ---EKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM  148 (168)
Q Consensus       116 ---e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~  148 (168)
                         ..+...+.|++++++.++...+.++.++..+..
T Consensus       113 ~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~  148 (155)
T 1x51_A          113 TPVTTVPPGARWLTQEEFHTAAVSTAMKKVFRVYQG  148 (155)
T ss_dssp             CCCCCCCTTEEEEEHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCccEEccHHHhhhcCCCHHHHHHHHHHHh
Confidence               124556899999999998777777777766544

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.55  E-value=8.3e-15  Score=115.14  Aligned_cols=75  Identities=20%  Similarity=0.190  Sum_probs=55.5

Q ss_pred             eEEEEEEEeC----CCceeccceecc-CCCCHHHHHHHHHHHHHcCccceeccc--------------cc----------
Q 030947           63 LEVLVISSQK----GKGMLFPKGGWE-IDESIQEAALRETIEEAGVTGIVEDQL--------------AE----------  113 (168)
Q Consensus        63 ~~vLLv~r~~----~~~W~lPgG~ve-~gEt~~~aA~REl~EEtGi~~~~~~~~--------------~~----------  113 (168)
                      .+|||+++.+    .+.|.||||+++ .||++.+||.||++||||+.+.....+              ..          
T Consensus        55 ~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~  134 (207)
T 1mk1_A           55 GNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVG  134 (207)
T ss_dssp             SEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCCEEEEEEEEEEECC
T ss_pred             CEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEcCCCccccEEEEEEEEccccCC
Confidence            4899998763    357999999999 999999999999999999986543310              00          


Q ss_pred             ----cCCCceeeEEEEeHhHHHhhcCCh
Q 030947          114 ----WPEKNVRSRKWMSVAEARKVCQHW  137 (168)
Q Consensus       114 ----~~e~e~~~~~W~~~~e~~~~~~~~  137 (168)
                          .++.|..++.|++++++.+++..+
T Consensus       135 ~~~~~~~~E~~~~~Wv~~~el~~~~~~~  162 (207)
T 1mk1_A          135 RPEAHHEEADMTMGWYPIAEAARRVLRG  162 (207)
T ss_dssp             C----------CEEEEEHHHHHHHHHTT
T ss_pred             CCCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence                112355689999999999987544

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.55  E-value=9e-15  Score=116.91  Aligned_cols=67  Identities=18%  Similarity=0.096  Sum_probs=50.7

Q ss_pred             CCceeccceeccC-CCCHHHHHHHHHHHHHcCcc--ceecc------------------ccc-------------cCCCc
Q 030947           73 GKGMLFPKGGWEI-DESIQEAALRETIEEAGVTG--IVEDQ------------------LAE-------------WPEKN  118 (168)
Q Consensus        73 ~~~W~lPgG~ve~-gEt~~~aA~REl~EEtGi~~--~~~~~------------------~~~-------------~~e~e  118 (168)
                      .+.|+||||+++. |||+.+||+||++||||+.+  ..+..                  +..             .++.|
T Consensus        94 ~~~welPgG~ve~~gEs~~eaA~REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E  173 (218)
T 3q91_A           94 GVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGE  173 (218)
T ss_dssp             CEEEECEEEECCSSSCCHHHHHHHHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEEEEECGGGBCC---------C
T ss_pred             CeEEECCcceeCCCCCCHHHHHHHHHHHHhCCccccCceEEEEEEecCCCccceEEEEEEEEECCcccccCCCCCCCCCc
Confidence            4579999999999 99999999999999999987  32220                  000             11336


Q ss_pred             eeeEEEEeHhHHHhhcCChhH
Q 030947          119 VRSRKWMSVAEARKVCQHWWM  139 (168)
Q Consensus       119 ~~~~~W~~~~e~~~~~~~~~~  139 (168)
                      ..++.|++++++.+++....+
T Consensus       174 ~~ev~wv~l~el~~~i~~g~i  194 (218)
T 3q91_A          174 LIEVVHLPLEGAQAFADDPDI  194 (218)
T ss_dssp             CEEEEEEEGGGHHHHHHCTTS
T ss_pred             EEEEEEEEHHHHHHHHHcCCC
Confidence            778999999999998865544

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.55  E-value=1.2e-14  Score=114.60  Aligned_cols=87  Identities=23%  Similarity=0.177  Sum_probs=62.4

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeC---------CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecc
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---------GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ  110 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---------~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~  110 (168)
                      ..+++++++.           ++.+|||+++.+         .+.|+||||++++||++.+||+||++||||+.+.....
T Consensus        58 ~av~vl~~~~-----------~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~  126 (209)
T 1g0s_A           58 HAAVLLPFDP-----------VRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKP  126 (209)
T ss_dssp             CEEEEEEEET-----------TTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEE
T ss_pred             CEEEEEEEEC-----------CCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEE
Confidence            4566666652           234899987653         24699999999999999999999999999998753330


Q ss_pred             ------------------ccc------------cCCCceeeEEEEeHhHHHhhcCCh
Q 030947          111 ------------------LAE------------WPEKNVRSRKWMSVAEARKVCQHW  137 (168)
Q Consensus       111 ------------------~~~------------~~e~e~~~~~W~~~~e~~~~~~~~  137 (168)
                                        +..            .++.|..++.|++++++.+++...
T Consensus       127 l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~i~~g  183 (209)
T 1g0s_A          127 VLSFLASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG  183 (209)
T ss_dssp             EEEEESCTTTBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTT
T ss_pred             eEEEecCCCccCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHHHHcC
Confidence                              000            112245579999999999986543

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.52  E-value=9.4e-14  Score=115.30  Aligned_cols=114  Identities=15%  Similarity=0.086  Sum_probs=80.2

Q ss_pred             ceeEEEEEEEEeecccccc-ccc----cCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCcc-------
Q 030947           38 RRQVVGCIPYRYKCVKQSL-DIN----EEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTG-------  105 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~-v~~----~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~-------  105 (168)
                      .+..+.+|+.+.+...+|. +.+    .+..+|||++|...|.|.||||+++.||++.+||+||++||||+..       
T Consensus       109 p~~a~~~vv~~~~~~~~g~~~~~~~~g~~~l~vLl~~r~~~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~  188 (292)
T 1q33_A          109 PNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEK  188 (292)
T ss_dssp             EEEEEEEEEEEECBCTTSCBCBCTTTCSBCEEEEEEECTTTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHH
T ss_pred             ccccceeeeeeecccccCceeeeccCCCCceEEEEEEecCCCcEeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccc
Confidence            3457888887764222232 111    1346899999988899999999999999999999999999999872       


Q ss_pred             -----ce---e---------------------c-----c-ccc-----------cCCCceeeEEEEeHhHHHhhcCChhH
Q 030947          106 -----IV---E---------------------D-----Q-LAE-----------WPEKNVRSRKWMSVAEARKVCQHWWM  139 (168)
Q Consensus       106 -----~~---~---------------------~-----~-~~~-----------~~e~e~~~~~W~~~~e~~~~~~~~~~  139 (168)
                           .+   .                     .     . ...           .+..+..+++||++++++.+  ....
T Consensus       189 ~~l~~~l~~l~~~~g~~vy~~~~~dpr~~d~~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~~L--~~~h  266 (292)
T 1q33_A          189 REIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKL--YASH  266 (292)
T ss_dssp             HHHHHHHHHHTTTSEEEEEEEECCCTTCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCC--STTH
T ss_pred             hhhHHHHHHHhhcccceeecccccCCCCCcccEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCccc--CHhH
Confidence                 00   0                     0     0 000           01235678999999999874  4567


Q ss_pred             HHHHHHHHHHHhcc
Q 030947          140 KEALDRLVMRLTSQ  153 (168)
Q Consensus       140 ~~~l~~~~~~~~~~  153 (168)
                      +.++.++.+++...
T Consensus       267 ~~il~~~~~~~~a~  280 (292)
T 1q33_A          267 SQFIKLVAEKRDAH  280 (292)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhcCc
Confidence            78888887776543

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.52  E-value=2.3e-14  Score=114.37  Aligned_cols=100  Identities=18%  Similarity=0.130  Sum_probs=68.5

Q ss_pred             hhhccccccccccC----CceeEEEEEEEEeeccccccccccCceEEEEEEEeCC-------Cceec-cceeccCCCC--
Q 030947           23 LVSRTGRHLQRYQK----GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG-------KGMLF-PKGGWEIDES--   88 (168)
Q Consensus        23 ~~~~~g~~~~r~~~----~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~-------~~W~l-PgG~ve~gEt--   88 (168)
                      ++..-|+.+.|-..    .+++.+..+++..+            ++|||++|..+       +.|.+ |||+++.|||  
T Consensus        47 ~~~~~~~~~~Rg~~e~d~~~~q~i~~~II~~~------------grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~  114 (211)
T 3e57_A           47 FLDQYGFFRERDEAEYDETTKQVIPYVVIMDG------------DRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGAT  114 (211)
T ss_dssp             HHHHHCEEEEHHHHTTCTTEEEEEEEEEEEET------------TEEEEEEC------------CBSSEECCCBGGGCSS
T ss_pred             HHhcCCEEEEccccccCCcccceEEEEEEEEC------------CEEEEEEECCCCCcccccCCcccccceEEeCCCCCC
Confidence            55555666655433    56666665555432            28999998643       57998 9999999999  


Q ss_pred             H----HHHHHHHHHHHHcCccceeccc----------------ccc---------CCCceeeEEEEeHhHHHhhc
Q 030947           89 I----QEAALRETIEEAGVTGIVEDQL----------------AEW---------PEKNVRSRKWMSVAEARKVC  134 (168)
Q Consensus        89 ~----~~aA~REl~EEtGi~~~~~~~~----------------~~~---------~e~e~~~~~W~~~~e~~~~~  134 (168)
                      +    .+||+||++||||+++.....+                ..|         .+.+..+++|+++++++++.
T Consensus       115 p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~~~~~~~~~l~~~f~~~~~~g~~~~~E~~~~~W~~~~eL~~~~  189 (211)
T 3e57_A          115 PREAFLKGLEREVNEEVDVSLRELEFLGLINSSTTEVSRVHLGALFLGRGKFFSVKEKDLFEWELIKLEELEKFS  189 (211)
T ss_dssp             HHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCSSHHHHTEEEEEEEEEEEEEEESCTTTCEEEEEEHHHHHHHG
T ss_pred             chhhHHHHHHHHHHHHhCCeeeccEEEEEEeccCCCCCeEEEEEEEEEEeCCceeCCCCeEEEEEEEHHHHHHhH
Confidence            5    9999999999999986544410                001         23356689999999999974

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.51  E-value=6.2e-14  Score=110.47  Aligned_cols=74  Identities=19%  Similarity=0.183  Sum_probs=57.1

Q ss_pred             ceEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecc------------------c---c----
Q 030947           62 DLEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ------------------L---A----  112 (168)
Q Consensus        62 ~~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~------------------~---~----  112 (168)
                      ..+|||+++.+    .+.|.||||+++.||++.+||+||++||||+.+.....                  +   .    
T Consensus        76 ~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~  155 (212)
T 2dsc_A           76 YECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDA  155 (212)
T ss_dssp             CCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTBCCEEEEEEEEEETTSG
T ss_pred             CcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCCCccCceEEEEEEEEeCccc
Confidence            35899988643    34799999999999999999999999999998653330                  0   0    


Q ss_pred             -------ccCCCceeeEEEEeHhHHHhhcC
Q 030947          113 -------EWPEKNVRSRKWMSVAEARKVCQ  135 (168)
Q Consensus       113 -------~~~e~e~~~~~W~~~~e~~~~~~  135 (168)
                             ...+.|..++.|++++++.+++.
T Consensus       156 ~~~~~~~~~~~~E~~~~~w~~~~el~~~~~  185 (212)
T 2dsc_A          156 ENARPKPKPGDGEFVEVISLPKNDLLQRLD  185 (212)
T ss_dssp             GGSSCCCCCCTTCCCEEEEEEGGGHHHHHH
T ss_pred             cccCCCCCCCCCceEEEEEEEHHHHHHHHH
Confidence                   00123667899999999999875

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.36  E-value=1.1e-12  Score=111.77  Aligned_cols=87  Identities=9%  Similarity=-0.057  Sum_probs=68.8

Q ss_pred             eEEEEEEEeCC----CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--------------cc----cC--CCc
Q 030947           63 LEVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--------------AE----WP--EKN  118 (168)
Q Consensus        63 ~~vLLv~r~~~----~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--------------~~----~~--e~e  118 (168)
                      ++|||.+|...    |.|+||||+++.| |+.+|+.||++||||+.+.....+              ..    +.  ..+
T Consensus       252 g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h~~~~~~~~~~~~~~~~~e  330 (369)
T 3fsp_A          252 GRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVFPGRLVHGGPV  330 (369)
T ss_dssp             SEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEEEEEEEEECCSSCC
T ss_pred             CEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcceEEEEEEEEEEEEcCCCCC
Confidence            48999999753    7899999999999 999999999999999987544311              00    11  235


Q ss_pred             eeeEEEEeHhHHHhhcCChhHHHHHHHHHHHH
Q 030947          119 VRSRKWMSVAEARKVCQHWWMKEALDRLVMRL  150 (168)
Q Consensus       119 ~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~  150 (168)
                      ..++.|++++++.++...+.++.+++.+.+.+
T Consensus       331 ~~~~~Wv~~~el~~~~l~~~~~~il~~l~~~~  362 (369)
T 3fsp_A          331 EEPYRLAPEDELKAYAFPVSHQRVWREYKEWA  362 (369)
T ss_dssp             CTTEEEEEGGGGGGSCCCHHHHHHHHHHHHHT
T ss_pred             ccccEEeeHHHhhhCCCCHHHHHHHHHHHHHh
Confidence            66789999999999888888888888776654

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.35  E-value=6.7e-12  Score=101.28  Aligned_cols=60  Identities=30%  Similarity=0.353  Sum_probs=48.9

Q ss_pred             CceeEEEEEEEEeeccccccccccCc-eEEEEEEEeC-----CCceeccceeccCCCC--------------------HH
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEED-LEVLVISSQK-----GKGMLFPKGGWEIDES--------------------IQ   90 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~-~~vLLv~r~~-----~~~W~lPgG~ve~gEt--------------------~~   90 (168)
                      ..|..+.+|+++..   .      ++ .+|||++|..     .|.|.||||+++.+|+                    +.
T Consensus         6 ~~r~aA~lill~~~---~------~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~   76 (232)
T 3qsj_A            6 DIRKAATLVVIRDG---A------NKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALA   76 (232)
T ss_dssp             CEEEEEEEEEEEEC---G------GGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHH
T ss_pred             CCcceEEEEEEEcC---C------CCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHH
Confidence            45677788888753   1      23 6999999974     3789999999999987                    58


Q ss_pred             HHHHHHHHHHHcCcc
Q 030947           91 EAALRETIEEAGVTG  105 (168)
Q Consensus        91 ~aA~REl~EEtGi~~  105 (168)
                      .||+||++||||+..
T Consensus        77 ~aAiRE~~EE~Gl~l   91 (232)
T 3qsj_A           77 VTALRETAEEIGWLL   91 (232)
T ss_dssp             HHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHhCcee
Confidence            999999999999964

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.30  E-value=8.1e-12  Score=98.66  Aligned_cols=66  Identities=21%  Similarity=0.169  Sum_probs=50.5

Q ss_pred             CceeEEEEEEEEeecccccc--ccccCceEEEEEEEeCCCceeccceeccCCC-CHHHHHHHHHHHHHcCccc
Q 030947           37 GRRQVVGCIPYRYKCVKQSL--DINEEDLEVLVISSQKGKGMLFPKGGWEIDE-SIQEAALRETIEEAGVTGI  106 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~--v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gE-t~~~aA~REl~EEtGi~~~  106 (168)
                      +.+..+.++++...   .++  ++.+++.+|||.++ ..+.|.||||+++.|| |+.+||.||++||||+.+.
T Consensus        31 ~~~~~~~~~l~~~~---~~vv~~i~~~~~~vLl~~r-~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~   99 (212)
T 1u20_A           31 GYKHACHALLHAPS---QAKLFDRVPIRRVLLMMMR-FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALA   99 (212)
T ss_dssp             SCEEEEEEEEEEEC---CCEETTTEECCEEEEEEEE-TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGG
T ss_pred             CCcccceEEEeCCC---ceEEEEEEecCCEEEEEEe-CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCcc
Confidence            44566677777653   221  12224568888877 5789999999999999 9999999999999999865

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.27  E-value=6.8e-12  Score=105.64  Aligned_cols=101  Identities=11%  Similarity=0.116  Sum_probs=76.2

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHH-cCccceeccccc---
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEA-GVTGIVEDQLAE---  113 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEt-Gi~~~~~~~~~~---  113 (168)
                      .+..+|+|+.+.             ++|||+  .+.| |.||||.+  +++..++|+||++||| |++++....+..   
T Consensus       182 p~~~vgaii~~~-------------g~vLL~--~~~G-W~LPG~~~--~~~~~~~a~RE~~EEttGl~v~~~~L~~v~~~  243 (321)
T 3rh7_A          182 GEIRLGAVLEQQ-------------GAVFLA--GNET-LSLPNCTV--EGGDPARTLAAYLEQLTGLNVTIGFLYSVYED  243 (321)
T ss_dssp             SCEEEEEEEESS-------------SCEEEB--CSSE-EBCCEEEE--SSSCHHHHHHHHHHHHHSSCEEEEEEEEEEEC
T ss_pred             CcceEEEEEEEC-------------CEEEEe--eCCC-ccCCcccC--CCChhHHHHHHHHHHhcCCEEeeceEEEEEEc
Confidence            568889998863             279999  5567 99998855  4444469999999997 999876662211   


Q ss_pred             -------------cCCCceeeEEEEeHhHHHhhc-CChhHHHHHHHHHHHHhcccCC
Q 030947          114 -------------WPEKNVRSRKWMSVAEARKVC-QHWWMKEALDRLVMRLTSQQLH  156 (168)
Q Consensus       114 -------------~~e~e~~~~~W~~~~e~~~~~-~~~~~~~~l~~~~~~~~~~~~~  156 (168)
                                   ..+.+..+++||++++++... .++.++..|+++++....+.|.
T Consensus       244 ~~~~~~~i~f~~~~~~g~~~e~~~f~~~elp~~~~~~~~~~~~L~~y~~e~~~g~f~  300 (321)
T 3rh7_A          244 KSDGRQNIVYHALASDGAPRQGRFLRPAELAAAKFSSSATADIINRFVLESSIGNFG  300 (321)
T ss_dssp             TTTCCEEEEEEEEECSSCCSSSEEECHHHHTTCEESSHHHHHHHHHHHHTTSCSSCC
T ss_pred             CCCceEEEEEEEEeCCCCeeeeEEECHHHCCCcccCCHHHHHHHHHHHHHhhcCCCC
Confidence                         122345778999999999874 6799999999988887777655

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.24  E-value=6.9e-11  Score=95.16  Aligned_cols=85  Identities=11%  Similarity=0.081  Sum_probs=62.0

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceecc-ceeccCC------CC---HHHHHHHHHHHHHc
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFP-KGGWEID------ES---IQEAALRETIEEAG  102 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~g------Et---~~~aA~REl~EEtG  102 (168)
                      .+..+++++++.            ++++||.+|..     +|.|.+| ||+++.|      |+   +.+||+||++||||
T Consensus        58 ~h~av~v~v~~~------------~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElG  125 (235)
T 2dho_A           58 LHRAFSVFLFNT------------ENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELG  125 (235)
T ss_dssp             CEEEEEEEEECT------------TCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHC
T ss_pred             eEEEEEEEEEcC------------CCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHC
Confidence            556677777753            23799988863     4789999 5999999      88   49999999999999


Q ss_pred             Cccce-----ec---c---------------c-ccc----------CCCceeeEEEEeHhHHHhhc
Q 030947          103 VTGIV-----ED---Q---------------L-AEW----------PEKNVRSRKWMSVAEARKVC  134 (168)
Q Consensus       103 i~~~~-----~~---~---------------~-~~~----------~e~e~~~~~W~~~~e~~~~~  134 (168)
                      +.+..     +.   .               + ..|          ...|..+++|++++++.+++
T Consensus       126 i~~~~v~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~~~~~~~~~Ev~~~~wv~~~el~~~l  191 (235)
T 2dho_A          126 IPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRMNVTLNPDPNEIKSYCYVSKEELKELL  191 (235)
T ss_dssp             CCGGGSCGGGSEEEEEEEEEEECSSSBEEEEEEEEEEEECCCCCCCCTTTEEEEEEECHHHHHHHH
T ss_pred             CCccccChhhcEEEEEEEEeccCCCccceeEEEEEEEEEECCCCcCChHHEEEEEEEcHHHHHHHH
Confidence            98541     11   0               0 000          13477889999999998865

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.24  E-value=6e-11  Score=96.23  Aligned_cols=85  Identities=12%  Similarity=0.044  Sum_probs=61.9

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceeccc-eeccCC------CCH---HHHHHHHHHHHHc
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFPK-GGWEID------ESI---QEAALRETIEEAG  102 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~lPg-G~ve~g------Et~---~~aA~REl~EEtG  102 (168)
                      .+..+++++++.            ++++||.+|..     +|.|.+|+ |+++.|      |++   .+||+||++||||
T Consensus        69 ~h~av~v~v~~~------------~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElG  136 (246)
T 2pny_A           69 LHRAFSVVLFNT------------KNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELG  136 (246)
T ss_dssp             CEEEEEEEEECT------------TCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEEEEeC------------CCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHC
Confidence            456677777753            23799988863     47899995 999999      887   9999999999999


Q ss_pred             Cccce-----ec---c---------------c-cc----c------CCCceeeEEEEeHhHHHhhc
Q 030947          103 VTGIV-----ED---Q---------------L-AE----W------PEKNVRSRKWMSVAEARKVC  134 (168)
Q Consensus       103 i~~~~-----~~---~---------------~-~~----~------~e~e~~~~~W~~~~e~~~~~  134 (168)
                      +.+..     +.   .               + ..    .      ...|..+++|++++++.+++
T Consensus       137 i~~~~v~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~~~~~~~~~Ev~~~~wv~~eel~~~l  202 (246)
T 2pny_A          137 IPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSILYLSQEELWELL  202 (246)
T ss_dssp             CCTTTCCGGGSEEEEEEEEEEESSSSBEEEEEEEEEEEECCCCCCCCTTTEEEEEEECHHHHHHHH
T ss_pred             CCccccCccccEEEEEEEEEecCCCceeeeEEEEEEEEEECCCCCCChHHeeEEEEEeHHHHHHHH
Confidence            97531     01   0               0 00    0      12477889999999998865

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.14  E-value=3e-10  Score=94.82  Aligned_cols=89  Identities=16%  Similarity=0.138  Sum_probs=65.8

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCce-eccceeccCCCCHHHHHHHHHHHHHcCccceec---
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVED---  109 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W-~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~---  109 (168)
                      +..+.+.+|..+    |     ++.++||.+|..     +|.| .+|+|+++.||++.+||.||++||+|+......   
T Consensus       118 ~~~vh~~~~~~~----~-----~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~  188 (300)
T 3dup_A          118 AYGVHLNGYVGA----G-----ADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAI  188 (300)
T ss_dssp             EEEEEEEEEESC----G-----GGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCE
T ss_pred             EEEEEEEEEEec----C-----CeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhcc
Confidence            455666677653    1     345899988863     5889 599999999999999999999999999864211   


Q ss_pred             ------------------c-------cc-----ccCCCceeeEEEEeHhHHHhhcCC
Q 030947          110 ------------------Q-------LA-----EWPEKNVRSRKWMSVAEARKVCQH  136 (168)
Q Consensus       110 ------------------~-------~~-----~~~e~e~~~~~W~~~~e~~~~~~~  136 (168)
                                        .       +.     ...+.|..+++|++++|+.+++..
T Consensus       189 ~~g~i~y~~~~~~G~~~E~~~vy~~~l~~~~~p~~~~~EV~~~~~v~~~El~~~l~~  245 (300)
T 3dup_A          189 PVGAITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEAVRT  245 (300)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEECCTTCCCCCTTSSEEEEEEEEHHHHHHHHHH
T ss_pred             ccceEEEEEecCCCeEEEEEEEEEEEecCCCcCCCCchHhheEEEECHHHHHHHHhc
Confidence                              0       00     002347889999999999988754

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.09  E-value=9.6e-11  Score=93.28  Aligned_cols=42  Identities=24%  Similarity=0.306  Sum_probs=36.7

Q ss_pred             EEEEEEEeCCCceeccceeccCCC-CHHHHHHHHHHHHHcCccc
Q 030947           64 EVLVISSQKGKGMLFPKGGWEIDE-SIQEAALRETIEEAGVTGI  106 (168)
Q Consensus        64 ~vLLv~r~~~~~W~lPgG~ve~gE-t~~~aA~REl~EEtGi~~~  106 (168)
                      ++||+.+. .+.|.||||+++.|| ++.+||+||++||||+.+.
T Consensus        66 ~~ll~~r~-~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~  108 (217)
T 2xsq_A           66 AILMQMRF-DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAA  108 (217)
T ss_dssp             EEEEEEET-TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGG
T ss_pred             cEEEEEcc-CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCc
Confidence            45665544 689999999999999 9999999999999999876

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=99.04  E-value=3e-10  Score=89.94  Aligned_cols=61  Identities=21%  Similarity=0.189  Sum_probs=47.7

Q ss_pred             cccC-CceeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcC
Q 030947           33 RYQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGV  103 (168)
Q Consensus        33 r~~~-~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi  103 (168)
                      .|.. +-|..+.+|++..+   .      +..+|||+++. .+.|.||||+++.||++.+|++||+.||.|+
T Consensus        51 ~y~~~g~R~sV~avil~~~---~------~~phVLLlq~~-~~~f~LPGGkle~gE~~~eaL~REL~EELg~  112 (208)
T 3bho_A           51 EFDKIGMRRTVEGVLIVHE---H------RLPHVLLLQLG-TTFFKLPGGELNPGEDEVEGLKRLMTEILGR  112 (208)
T ss_dssp             HHHHHCSEEEEEEEEEEEE---T------TEEEEEEEEEE-TTEEECSEEECCTTCCHHHHHHHHHHHHHCC
T ss_pred             HHHhhCCceEEEEEEEEcC---C------CCcEEEEEEcC-CCcEECCCcccCCCCCHHHHHHHHHHHHhCC
Confidence            4444 55666666655443   1      44689999984 5689999999999999999999999999995

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=98.86  E-value=1.2e-09  Score=86.03  Aligned_cols=64  Identities=13%  Similarity=0.028  Sum_probs=47.3

Q ss_pred             CceeEEEEEEEEeecccccccccc-CceEEEEEEEeCCCceeccceeccCCC-CHHHHHHHHHHHHHcC
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINE-EDLEVLVISSQKGKGMLFPKGGWEIDE-SIQEAALRETIEEAGV  103 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~-~~~~vLLv~r~~~~~W~lPgG~ve~gE-t~~~aA~REl~EEtGi  103 (168)
                      +++-.+.|.+|..+   .+..+.+ .-...+|++.+..|.|.||||+||.|| |+++|+.||+.||+|+
T Consensus        19 ~~~hach~mlya~~---~~~lfg~~p~r~~iLmQ~R~~G~weFPGGkVe~gE~t~e~aL~REl~EElg~   84 (214)
T 3kvh_A           19 GWSHSCHAMLYAAN---PGQLFGRIPMRFSVLMQMRFDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGC   84 (214)
T ss_dssp             TCEEEEEEEEEEEE---EEEETTTEEEEEEEEEEEETTSCEECSEEEECTTTCCHHHHHHHSCCSCC--
T ss_pred             CccEeeEEEEEcCC---ccccccccchhheEEEeeeeCCEEeCCCccCCCCCCCHHHHHHHHHHHhhCC
Confidence            56778888888765   2211111 112456777777799999999999999 9999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	5e-12
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	1e-11
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	6e-08
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	6e-07
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	3e-06
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	3e-05
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	4e-05
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	8e-05
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	9e-04
d1vk6a2	131	d.113.1.4 (A:126-256) NADH pyrophosphatase {Escher	0.001
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	0.001

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 5e-12
 Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 34/142 (23%)

Query: 42  VGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAALRETIEE 100
            G I +R   +     ++   +E L++ +  G      PKG  E  E   E ALR T EE
Sbjct: 11  CGLIIFRRCLI---PKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEE 67

Query: 101 AGVTGIVEDQLAEW------------------------------PEKNVRSRKWMSVAEA 130
           AG+       +  +                                   ++ +W+ + EA
Sbjct: 68  AGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEA 127

Query: 131 RKVCQHWWMKEALDRLVMRLTS 152
            ++ Q   MK AL      L S
Sbjct: 128 CQLAQFKEMKAALQEGHQFLCS 149

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 1e-11
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 9/102 (8%)

Query: 36  KGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALR 95
            G ++   C+ +R            E+  +LV SS+     + P GG E +E    AA+R
Sbjct: 8   DGYKKRAACLCFRS---------ESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVR 58

Query: 96  ETIEEAGVTGIVEDQLAEWPEKNVRSRKWMSVAEARKVCQHW 137
           E  EEAGV G +   +  +  +  + R ++ V    +V + W
Sbjct: 59  EVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLIVTEVLEDW 100

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 46.9 bits (111), Expect = 6e-08
 Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 26/117 (22%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEW--- 114
            N +  EVL++  + G   +FPKG  E  ES++EAA+RE  EE GV   V   L      
Sbjct: 10  FNAKR-EVLLLRDRMGF-WVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYV 67

Query: 115 ---------------------PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL 150
                                 E+ +    W S  EAR +         L+  + RL
Sbjct: 68  NPKGVEREVHWFLMRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERL 124

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 44.4 bits (104), Expect = 6e-07
 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 31/120 (25%)

Query: 58  INEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEW--- 114
              E+  ++++ +  G     P G  E  E+ +EA  RE +EE G++  +   L E    
Sbjct: 25  SKPENNTMVLVQAPNGAYF-LPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEY 83

Query: 115 ---------------------------PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 147
                                      P +   +  W++  EA ++ +    + A+++ +
Sbjct: 84  FYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLLKRGSHRWAVEKWL 143

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 42.8 bits (100), Expect = 3e-06
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 58  INEEDLEVLVISSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPE 116
           ++    + +++   K      FPKG  + DES  + A+RE  EE G          E+ +
Sbjct: 10  LDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFID 69

Query: 117 KNVRSRKW 124
             +R +  
Sbjct: 70  MTIRGQNV 77

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 39.9 bits (92), Expect = 3e-05
 Identities = 17/67 (25%), Positives = 30/67 (44%)

Query: 61  EDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPEKNVR 120
           E+ +VL++  ++    ++P G  E +E+  EA  RE  EE G+            ++N  
Sbjct: 10  ENGKVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAV 69

Query: 121 SRKWMSV 127
            R    V
Sbjct: 70  ERPMPLV 76

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 4e-05
 Identities = 13/89 (14%), Positives = 22/89 (24%)

Query: 59  NEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPEKN 118
            +  L+ + I  +       P G  +  E I     RE  EEA  +           E+ 
Sbjct: 135 GKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEK 194

Query: 119 VRSRKWMSVAEARKVCQHWWMKEALDRLV 147
           +            K             + 
Sbjct: 195 LHKLFSQDHLVIYKGYVDDPRNTDNAWME 223

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (89), Expect = 8e-05
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 55  SLDINEEDLEVLVISSQKG--KGML-FPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL 111
           +L +  +   VL+   ++G   G      G  +  E+I++ A RE  EE+G+T     ++
Sbjct: 8   TLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKV 67

Query: 112 A--EWPEKNVRSRKWMSVAEARKVCQHWWMKEALD 144
               +          + V     +       + + 
Sbjct: 68  GQIVFEFVGEPELMDVHVFCTDSIQGTPVESDEMR 102

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 36.0 bits (82), Expect = 9e-04
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 51  CVKQSLDINEEDLEVLVI--SSQKGKGML-FPKGGWEIDESIQEAALRETIEEAGVTGIV 107
            V    +   + L+VL+I       +     P G    +ES +++ LRET EE GV    
Sbjct: 42  MVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQ 101

Query: 108 EDQLAEWPEKNVRSRKWMSV 127
           E+                 V
Sbjct: 102 ENIEQLHSFSRPDRDPRGWV 121

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 35.5 bits (81), Expect = 0.001
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 58  INEEDLEVLVISSQKGKGM-LFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAEWPE 116
           I  +D  +L   ++   G+     G  E+ E++++A  RE +EE+G+       +   P 
Sbjct: 10  IRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPW 69

Query: 117 KNVRSRKWMSVAEA 130
              +S     +AE 
Sbjct: 70  PFPQSLMTAFMAEY 83

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 35.5 bits (81), Expect = 0.001
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 58  INEEDLEVLVISSQKGKGML-------FPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ 110
           +  E  ++L++  +   G          P G  E  E+ Q+AA+RE  EE G+       
Sbjct: 19  LLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKF 78

Query: 111 LAEWPEKNVRSRKW 124
           L  +  +       
Sbjct: 79  LGAYLGRFPDGVLI 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.87
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.87
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.84
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.83
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.82
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.81
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.8
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.8
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.77
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.77
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.77
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.75
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.75
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.73
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.72
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.71
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.69
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.68
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.64
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.62
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.58
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.58
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.57
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.57
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.55
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.45
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.38
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.32
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.22
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	98.92

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.87  E-value=1.9e-21  Score=140.87  Aligned_cols=103  Identities=24%  Similarity=0.253  Sum_probs=84.1

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeC-CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-------  111 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-------  111 (168)
                      .++|+|+|+..   +      ++.++||++++. +|.|.+|||+++.|||+.+||.||++||||+++......       
T Consensus         3 raag~vv~~~~---~------~~~~~Ll~~r~~~~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~   73 (137)
T d1ktga_           3 KAAGLVIYRKL---A------GKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETL   73 (137)
T ss_dssp             EEEEEEEEEEE---T------TEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEE
T ss_pred             EEEEEEEEEEc---C------CCEEEEEEEEcCCCCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeeeeeeeeeee
Confidence            36889999865   2      567899999874 589999999999999999999999999999986543300       


Q ss_pred             ----------------------cccCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHh
Q 030947          112 ----------------------AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT  151 (168)
Q Consensus       112 ----------------------~~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~  151 (168)
                                            ...+..|..+++|+++++++++..+++++.+++++..++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~L~  135 (137)
T d1ktga_          74 FYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIADYAEMGSLLRKFSAFLA  135 (137)
T ss_dssp             EEEETTEEEEEEEEEEEECSCCCCCCCTTEEEEEEECHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             ecCCCcceEEEEEEEEEecCCCCcCCCcceEEEEEEEHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence                                  0113447788999999999999999999999988887764

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=7e-22  Score=142.97  Aligned_cols=99  Identities=32%  Similarity=0.323  Sum_probs=79.6

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-------  111 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-------  111 (168)
                      ++.||+|+++.+            .+|||+++ +.|.|.||||+++.|||+.+||.||++||||+++.....+       
T Consensus         2 ~v~agavv~~~~------------~~vLl~~~-~~g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~   68 (126)
T d1vcda1           2 ELGAGGVVFNAK------------REVLLLRD-RMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVN   68 (126)
T ss_dssp             EEEEEEEEECTT------------SCEEEEEC-TTSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEEC
T ss_pred             EEEEEEEEEECC------------CEEEEEEc-CCCCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEEEeeeeecc
Confidence            467899998743            37888875 4578999999999999999999999999999987654410       


Q ss_pred             --------cc---------cCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHH
Q 030947          112 --------AE---------WPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL  150 (168)
Q Consensus       112 --------~~---------~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~  150 (168)
                              ..         .++.++.+++|++++++.+++.++..+.+++.+++++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~il~~~~~~l  124 (126)
T d1vcda1          69 PKGVEREVHWFLMRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERL  124 (126)
T ss_dssp             TTSCEEEEEEEEEEEESCCCCCTTCCEEEEECHHHHHHHBCSHHHHHHHHHHHHHS
T ss_pred             CCCeEEEEEEEEEEEcCCCCCCccceEEEEEEHHHHhhccCChHHHHHHHHHHHhC
Confidence                    00         1233677899999999999999999999988887764

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.84  E-value=2.9e-21  Score=141.70  Aligned_cols=99  Identities=18%  Similarity=0.202  Sum_probs=78.4

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc-------
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA-------  112 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~-------  112 (168)
                      +.+++|++++             ++|||+++.+.|.|.||||+++.||++.+||.||++||||+++.......       
T Consensus         2 v~a~~vi~~d-------------~kvLl~~r~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~   68 (152)
T d1k2ea_           2 IVTSGVLVEN-------------GKVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENA   68 (152)
T ss_dssp             EEEEEECEET-------------TEEEEEECTTTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSE
T ss_pred             EEEEEEEEEC-------------CEEEEEEEcCCCeEECCeeEEeCCccHHHHHHHHHHHHHCCceeeeEEEEEEecccc
Confidence            3566777653             28999999888999999999999999999999999999999875444000       


Q ss_pred             ------------------------------ccCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHh
Q 030947          113 ------------------------------EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLT  151 (168)
Q Consensus       113 ------------------------------~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~  151 (168)
                                                    ..+..|..+++|++++++.++..+++++.++..+++.+.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~l~  137 (152)
T d1k2ea_          69 VERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRIETFPNVRKVVSLALSTLY  137 (152)
T ss_dssp             EECCCCSEEEEEEEECSSCEEEEEEEEEEEEEEEECCCSCEEEEGGGGGGSCBSTTHHHHHHHHHHHHH
T ss_pred             ccCcceEEEEEEEEecCCCceEEEEEeEeeecCCCCcceEEEeEHHHHhhCCCCHHHHHHHHHHHHHHh
Confidence                                          002235668999999999999888989888887666554

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.9e-20  Score=136.45  Aligned_cols=112  Identities=26%  Similarity=0.272  Sum_probs=88.6

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEeC-CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc------
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------  111 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------  111 (168)
                      ...+|+|+|+....   ...+.+..++||+++.+ .+.|.+|||+++.|||+.+||.||++||||+........      
T Consensus         8 ~~~~g~i~f~~~~~---~~~~~~~~~~LL~~~~~~~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~   84 (153)
T d1xsba_           8 LRACGLIIFRRCLI---PKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRE   84 (153)
T ss_dssp             EEEEEEEEEEECSS---CSSSSTTEEEEEEEESSTTCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEECSSCCEE
T ss_pred             hheeEEEEEecccc---ccccCCCCEEEEEEecCCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeeeeccceee
Confidence            34579999985411   12333778999999876 467999999999999999999999999999986533300      


Q ss_pred             ------------------------cccCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHhcc
Q 030947          112 ------------------------AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTSQ  153 (168)
Q Consensus       112 ------------------------~~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~~~  153 (168)
                                              ...+..|..+++||+++++.+++.++.++.++.++.+.+.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~iL~~~~~~L~~~  150 (153)
T d1xsba_          85 LNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAALQEGHQFLCSI  150 (153)
T ss_dssp             EEEESSSCEEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHHHTCSHHHHHHHHHHHHHHTTS
T ss_pred             ecccccCceeEEEEEEEEEeecccccCCCcceeEEEEEEHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence                                    001334788999999999999999999999999999998765

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.82  E-value=7e-20  Score=138.03  Aligned_cols=59  Identities=32%  Similarity=0.444  Sum_probs=52.0

Q ss_pred             CCceeEEEEEEEEeeccccccccccCceEEEEEEEeC-CCceeccceeccCCCCHHHHHHHHHHHHHcCccc
Q 030947           36 KGRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGI  106 (168)
Q Consensus        36 ~~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~  106 (168)
                      .++|..||+|+++.            +++|||++|.+ .|.|.+|||+|+.|||+.+||.||++||||+++.
T Consensus        11 ~~yR~~Vg~vI~n~------------~~~vLL~kR~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~   70 (165)
T d1jkna_          11 EGYRRNVGICLMNN------------DKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSA   70 (165)
T ss_dssp             SSEEEEEEEEEECT------------TSCEEEEEESSSTTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSE
T ss_pred             CCccccEEEEEEeC------------CCEEEEEEEcCCCCcccCccceEcCCCChhHHHHHHHHHhhccccc
Confidence            36899999999864            34899999875 4889999999999999999999999999999864

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.7e-20  Score=135.34  Aligned_cols=95  Identities=34%  Similarity=0.584  Sum_probs=73.3

Q ss_pred             cccC-CceeEEEEEEEEeeccccccccccCceEEEEEEEe-CCCceeccceeccCCCCHHHHHHHHHHHHHcCccceecc
Q 030947           33 RYQK-GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQ-KGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ  110 (168)
Q Consensus        33 r~~~-~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~-~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~  110 (168)
                      -|+. ++|..+|||+|+.+          ++..+||++++ .++.|.||||+++.|||+.+||+||++||||+.+.....
T Consensus         4 ~~~~~~~r~~a~~vv~~~~----------~~~~~lL~~~~~~~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~   73 (135)
T d2fvva1           4 TYDGDGYKKRAACLCFRSE----------SEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRL   73 (135)
T ss_dssp             CBCTTSCEEEEEEEEESST----------TCCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEE
T ss_pred             ecCCCCCceEEEEEEEEec----------CCCEEEEEEEeCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEE
Confidence            4555 78999999999864          44466666654 458899999999999999999999999999998765551


Q ss_pred             cc-----------------------cc--CCCceeeEEEEeHhHHHhhcCCh
Q 030947          111 LA-----------------------EW--PEKNVRSRKWMSVAEARKVCQHW  137 (168)
Q Consensus       111 ~~-----------------------~~--~e~e~~~~~W~~~~e~~~~~~~~  137 (168)
                      +.                       ..  +..+..+++||+++++.+++.+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~  125 (135)
T d2fvva1          74 VGIFENQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQYH  125 (135)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHTTT
T ss_pred             EEEEeeccCCccEEEEEEEEEeecCCCCCCCCceeEEEEEEHHHHHHHHhcC
Confidence            10                       00  11256689999999999988653

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.80  E-value=7.7e-20  Score=136.09  Aligned_cols=105  Identities=16%  Similarity=0.248  Sum_probs=77.7

Q ss_pred             CceeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccccc
Q 030947           37 GRRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLAE  113 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~~  113 (168)
                      .+++.|+||+|..+   +      ++.+|||++|..   .|.|.||||+++.|||+.+||.||++||||++.....++..
T Consensus         8 ~~~v~Vd~Vi~~~~---~------~~~~vLLv~R~~~p~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~~~~   78 (147)
T d2fb1a2           8 TFYLGIDCIIFGFN---E------GEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGA   78 (147)
T ss_dssp             CEEEEEEEEEEEEE---T------TEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEE
T ss_pred             CcceEEEEEEEEEe---C------CcCEEEEEEccCCCCCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccceeeeeE
Confidence            57788999999876   2      557999999875   38899999999999999999999999999998655542211


Q ss_pred             c--------------------C-------CCceeeEEEEeHhHHHhhcCChhHHHHHHHHHHHHhc
Q 030947          114 W--------------------P-------EKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTS  152 (168)
Q Consensus       114 ~--------------------~-------e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~~~  152 (168)
                      +                    +       ..+..+++||++++++++...  ..+++..+++++.+
T Consensus        79 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~lp~lafD--H~~ii~~a~~~lr~  142 (147)
T d2fb1a2          79 FGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPALIFD--HPEMVDKAREMMKQ  142 (147)
T ss_dssp             ECCTTSSSSSCEEEEEEEEECCTTSSCHHHHHHTTEEEEETTSCCCBSTT--HHHHHHHHHHHHHH
T ss_pred             ecCCcccCCCceEEEEEEEEecCCcccCCCcchhheEEecHHhchhcccC--HHHHHHHHHHHHHH
Confidence            0                    0       014557899999999986532  23445555555543

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.80  E-value=2.3e-19  Score=131.61  Aligned_cols=98  Identities=20%  Similarity=0.273  Sum_probs=73.8

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-------  111 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-------  111 (168)
                      |..+++|+++.+           + ++||+.++..+.|.||||+++.|||+.+||.||++||||+++.....+       
T Consensus        17 r~~~~~vi~~~~-----------~-~~lll~~~~~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~   84 (147)
T d2azwa1          17 RYAAYIIVSKPE-----------N-NTMVLVQAPNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYF   84 (147)
T ss_dssp             CCEEEEECEEGG-----------G-TEEEEEECTTSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEE
T ss_pred             CCeEEEEEEECC-----------C-CEEEEEEcCCCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeEEEEEEEEe
Confidence            456777777653           2 344445556689999999999999999999999999999986644310       


Q ss_pred             -----------------------cccCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHH
Q 030947          112 -----------------------AEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM  148 (168)
Q Consensus       112 -----------------------~~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~  148 (168)
                                             ...+..+..+++|++++++.+++.++..+.+++++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~r~~l~~~la  144 (147)
T d2azwa1          85 YSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLLKRGSHRWAVEKWLA  144 (147)
T ss_dssp             EETTTTEEEEEEEEEEEEEEEEECSSCC-CCSEEEEECHHHHHHHBSCHHHHHHHHHHHH
T ss_pred             eeccCCceEEEEEEEEEEEeccccCCCCccceEEEEEEHHHHHHHcCChhHHHHHHHHHh
Confidence                                   0002236678999999999999999888888877654

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.77  E-value=9.7e-19  Score=127.92  Aligned_cols=71  Identities=25%  Similarity=0.297  Sum_probs=57.2

Q ss_pred             EEEEEEEeCC---CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc----------------------------c
Q 030947           64 EVLVISSQKG---KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL----------------------------A  112 (168)
Q Consensus        64 ~vLLv~r~~~---~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~----------------------------~  112 (168)
                      ++||+++.+.   +.|.||||+++.|||+.+||+||++||||+++.....+                            .
T Consensus        15 k~Llv~r~~~~~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (146)
T d2b0va1          15 KYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPD   94 (146)
T ss_dssp             EEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEECTT
T ss_pred             EEEEEEEecCCCCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceEEEEEEEecCCCCeEEEEEEEEEEeecCCCC
Confidence            8999998753   56999999999999999999999999999987544410                            0


Q ss_pred             ccCCCceeeEEEEeHhHHHhhc
Q 030947          113 EWPEKNVRSRKWMSVAEARKVC  134 (168)
Q Consensus       113 ~~~e~e~~~~~W~~~~e~~~~~  134 (168)
                      ...+.+..+++|++++|+....
T Consensus        95 ~~~~~E~~~~~W~~~~el~~~~  116 (146)
T d2b0va1          95 RKLDTGIVRAAWFSIDEIRAKQ  116 (146)
T ss_dssp             SCCCTTEEEEEEEEHHHHHHTG
T ss_pred             CCCCcceeEEEEeeHHHHhhCc
Confidence            1123467889999999998764

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.77  E-value=2.4e-19  Score=132.95  Aligned_cols=84  Identities=24%  Similarity=0.347  Sum_probs=63.1

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeC-CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecc--------
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ--------  110 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~--------  110 (168)
                      .++|||+|+.           +..+|||+++.+ .+.|.||||+++.|||+.+||+||++||||+++.....        
T Consensus         3 ~v~Gaii~~~-----------~~~kvLLvk~~~~~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~   71 (151)
T d2a6ta2           3 PVRGAIMLDM-----------SMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMT   71 (151)
T ss_dssp             CEEEEEEBCS-----------SSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEE
T ss_pred             cEEEEEEEEC-----------CCCEEEEEEEeCCCCCEECCcccccCCCCHHHHHHHHHHHHhCCCceeeeecceEEeec
Confidence            3678998874           335899999864 57899999999999999999999999999998643220        


Q ss_pred             ----------c---------cccCCCceeeEEEEeHhHHHhhc
Q 030947          111 ----------L---------AEWPEKNVRSRKWMSVAEARKVC  134 (168)
Q Consensus       111 ----------~---------~~~~e~e~~~~~W~~~~e~~~~~  134 (168)
                                +         ...+..|+.++.||++++++.+.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~~~W~~~~el~~~~  114 (151)
T d2a6ta2          72 IRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFK  114 (151)
T ss_dssp             ETTEEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC
T ss_pred             ccCceEEEEEEEEeccCCcccccCCCccceEEEEEHHHhhhhh
Confidence                      0         00123377889999999998753

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.1e-18  Score=127.09  Aligned_cols=88  Identities=15%  Similarity=0.169  Sum_probs=68.2

Q ss_pred             EEEEEEEeC--CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-----------------------cccCCCc
Q 030947           64 EVLVISSQK--GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-----------------------AEWPEKN  118 (168)
Q Consensus        64 ~vLLv~r~~--~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-----------------------~~~~e~e  118 (168)
                      ++||+++++  .|.|.||||++++|||+.+||.||++||||+++.....+                       ...+..|
T Consensus        15 ~vLL~~~~~~~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E   94 (131)
T d1vk6a2          15 SILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDPKE   94 (131)
T ss_dssp             EEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEEEEEEECCCCCCTTT
T ss_pred             EEEEEEeccCCCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeEEEEeccCcCceEEEEEEEEEcCCcccCCCcc
Confidence            899998875  368999999999999999999999999999987654410                       0112347


Q ss_pred             eeeEEEEeHhHHHhhcCChhH-HHHHHHHHHHHh
Q 030947          119 VRSRKWMSVAEARKVCQHWWM-KEALDRLVMRLT  151 (168)
Q Consensus       119 ~~~~~W~~~~e~~~~~~~~~~-~~~l~~~~~~~~  151 (168)
                      ..+++||+++|++.+.....+ +.+++.+.+.+.
T Consensus        95 ~~~~~W~~~~el~~l~~~~~i~r~li~~~l~~~r  128 (131)
T d1vk6a2          95 LLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCR  128 (131)
T ss_dssp             EEEEEEEETTSCCSCCCTTSHHHHHHHHHHHHHH
T ss_pred             EEEEEEEcHHHHhhCCCChHHHHHHHHHHHHHHH
Confidence            889999999999988765555 456666666554

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.75  E-value=2.4e-18  Score=127.49  Aligned_cols=76  Identities=20%  Similarity=0.190  Sum_probs=59.8

Q ss_pred             eEEEEEEEeC-------CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc-----------------------
Q 030947           63 LEVLVISSQK-------GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA-----------------------  112 (168)
Q Consensus        63 ~~vLLv~r~~-------~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~-----------------------  112 (168)
                      ++|||++|+.       .|.|.||||+++.|||+.+||+||++||||+++.....+.                       
T Consensus        24 g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  103 (158)
T d1sjya_          24 GDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEP  103 (158)
T ss_dssp             CCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTTSCEEEEEEEEEEECS
T ss_pred             CEEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceeeEEEEEEEEECCCCCEEEEEEEEEEEcC
Confidence            4899999863       3679999999999999999999999999999876544110                       


Q ss_pred             -----ccCCCceeeEEEEeHhHHHhhcCChh
Q 030947          113 -----EWPEKNVRSRKWMSVAEARKVCQHWW  138 (168)
Q Consensus       113 -----~~~e~e~~~~~W~~~~e~~~~~~~~~  138 (168)
                           ..++.|..+++|++++++.+++..+.
T Consensus       104 ~~~~~~~~~~E~~~~~w~~~~el~~l~~~~~  134 (158)
T d1sjya_         104 GQTLAPAFTDEIAEASFVSREDFAQLYAAGQ  134 (158)
T ss_dssp             SCCCCCCCCSSEEEEEEECHHHHHHHHHTTC
T ss_pred             CcccCCCCCcceEEEEEEEHHHHhhhhhCCc
Confidence                 01234778899999999998765443

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.3e-18  Score=128.48  Aligned_cols=98  Identities=16%  Similarity=0.032  Sum_probs=72.1

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc---
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL---  111 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~---  111 (168)
                      .|+.+.+++++.             .+|||++|++   .|.|.+|||+++.|||+.+||+||++||||+++.....+   
T Consensus         4 ~r~~~~v~i~~~-------------~~vLL~~r~~~~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~   70 (156)
T d1irya_           4 SRLYTLVLVLQP-------------QRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQI   70 (156)
T ss_dssp             CEEEEEECEECS-------------SEEEEEEESSSSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCEEEEE
T ss_pred             cEEEEEEEEEEC-------------CEEEEEEecCCCCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccceEEEEEE
Confidence            356666666643             2899999875   378999999999999999999999999999986543300   


Q ss_pred             ------------------ccc----CCCceeeEEEEeHhHHHhhcCChhHHHHHHHHHH
Q 030947          112 ------------------AEW----PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVM  148 (168)
Q Consensus       112 ------------------~~~----~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~  148 (168)
                                        ..+    ...+..+.+||++++++.+...+.++..+..+.+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~W~~~~~l~~~~~~~~d~~~l~~~l~  129 (156)
T d1irya_          71 VFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQ  129 (156)
T ss_dssp             EEEETTCSCEEEEEEECCCCBCSCCCCCSSEEEEEEETTCCCSTTTCSSHHHHHHHHHH
T ss_pred             EEEcCCCCEEEEEEEEEEEeecCcccCCchhheEEeEHHHCCcCCCCccHHHHHHHHhC
Confidence                              000    1224456899999999988777767666655543

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.73  E-value=8.2e-18  Score=125.05  Aligned_cols=87  Identities=21%  Similarity=0.273  Sum_probs=65.9

Q ss_pred             CceEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc------------------------c
Q 030947           61 EDLEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------------------------A  112 (168)
Q Consensus        61 ~~~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------------------------~  112 (168)
                      ++.++||++|..    .+.|.||||+++.|||+.+||.||++||||+++.....+                        .
T Consensus        19 ~~~~lLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (155)
T d2b06a1          19 ETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDTGGRYIVICYKATEFSG   98 (155)
T ss_dssp             TTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTSCEEEEEEEEECEEEE
T ss_pred             CCCEEEEEEECCCCCCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEEEEEEEeecCCCCeEEEEEEEEEecCC
Confidence            345899988763    256999999999999999999999999999987544310                        0


Q ss_pred             ccCCCceeeEEEEeHhHHHhhcCChhHHHHHHHHH
Q 030947          113 EWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV  147 (168)
Q Consensus       113 ~~~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~  147 (168)
                      .....+..+++||++++++++...+.+...++.+.
T Consensus        99 ~~~~~e~~~~~W~~~~el~~l~~~~~~~~~~~~~~  133 (155)
T d2b06a1          99 TLQSSEEGEVSWVQKDQIPNLNLAYDMLPLMEMME  133 (155)
T ss_dssp             CCCCBTTBEEEEEEGGGGGGSCBCTTHHHHHHHHH
T ss_pred             ccCCCchheEEEEEHHHhccCCCCchhHHHHHHHh
Confidence            11234667899999999999877776666655443

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=2.4e-17  Score=122.56  Aligned_cols=85  Identities=16%  Similarity=0.173  Sum_probs=64.2

Q ss_pred             eeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec------
Q 030947           39 RQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED------  109 (168)
Q Consensus        39 r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~------  109 (168)
                      ..++++|+++.            +++|||++|++   .|.|.+|||+++.|||+.+||+||++||||+++....      
T Consensus        18 ~~~v~~vi~~~------------~~~vLL~kR~~~~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~   85 (160)
T d1ryaa_          18 LVSLDFIVENS------------RGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGV   85 (160)
T ss_dssp             EEEEEEEEECT------------TSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEE
T ss_pred             EEEEEEEEEeC------------CCeEEEEEeCCCCCCCcEecccccccCCCcHHHHHHHHHHHHhCceEeeeeeeEEEE
Confidence            45667777653            33899999875   3789999999999999999999999999999864322      


Q ss_pred             --c---------------c------------cccCCCceeeEEEEeHhHHHhhcC
Q 030947          110 --Q---------------L------------AEWPEKNVRSRKWMSVAEARKVCQ  135 (168)
Q Consensus       110 --~---------------~------------~~~~e~e~~~~~W~~~~e~~~~~~  135 (168)
                        .               +            ...++.+..+++|++++++..+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~e~~W~~~~el~~~~~  140 (160)
T d1ryaa_          86 WQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDN  140 (160)
T ss_dssp             EEEEESSBTTBSSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHCTT
T ss_pred             EEEeccccccCCCcceEEEEEEEEEEecCCCccCCCcceEEEEEEEHHHhhcCcc
Confidence              0               0            000233677899999999988643

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.71  E-value=2.4e-17  Score=128.53  Aligned_cols=89  Identities=25%  Similarity=0.355  Sum_probs=67.8

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeC---CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec--ccc
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK---GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED--QLA  112 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~---~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~--~~~  112 (168)
                      ..+.+++|+|..+..+       ++.+|||++|+.   .|.|.||||+++.|||+.+||.||++||||+.+....  ++.
T Consensus        36 P~v~vd~vi~~~~~~~-------~~l~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l~~~~  108 (202)
T d2fmla2          36 PSLTVDMVLLCYNKEA-------DQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLH  108 (202)
T ss_dssp             CEEEEEEEEEEEETTT-------TEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEEE
T ss_pred             CccEEEEEEEEEecCC-------CeeEEEEEEecCCCCCCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeecceeeeee
Confidence            5677888888765211       456999999986   3889999999999999999999999999999754222  110


Q ss_pred             c--------------------------cCCCceeeEEEEeHhHHHhh
Q 030947          113 E--------------------------WPEKNVRSRKWMSVAEARKV  133 (168)
Q Consensus       113 ~--------------------------~~e~e~~~~~W~~~~e~~~~  133 (168)
                      .                          -+..+..+++||++++++..
T Consensus       109 ~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~Wf~ld~l~~~  155 (202)
T d2fmla2         109 SFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQH  155 (202)
T ss_dssp             EECCTTSSTTSSEEEEEEEEECCCCCCCCCTTEEEEEEEEEEEETTE
T ss_pred             ecccCCccccceEEEEEEEEEeCCCCcCCCcceeeEEEEeHHHCcch
Confidence            0                          02336778999999998763

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=8.2e-18  Score=121.11  Aligned_cols=84  Identities=23%  Similarity=0.314  Sum_probs=63.8

Q ss_pred             eEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc-------------------ccc----C
Q 030947           63 LEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL-------------------AEW----P  115 (168)
Q Consensus        63 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~-------------------~~~----~  115 (168)
                      ++|||++|..    +|.|.||||+++.|||+.+||.||++||||+.+.....+                   ..+    .
T Consensus        16 ~~vLl~~R~~~~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (129)
T d1puna_          16 NEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWLVERWEGEPW   95 (129)
T ss_dssp             SCEEEBCCCSSCSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCCSEEEEEECSSEEEEEEEEECCCCSSCCC
T ss_pred             CEEEEEEecCCCCCCCcEECCcceecCCCchhHHHHHHHHHHhCCccccceeeeEEeecccccceeEEEEEEeeccCcCC
Confidence            4899999864    378999999999999999999999999999987644410                   011    1


Q ss_pred             CCceeeEEEEeHhHHHhhcCChhHHHHHHHH
Q 030947          116 EKNVRSRKWMSVAEARKVCQHWWMKEALDRL  146 (168)
Q Consensus       116 e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~  146 (168)
                      ..|+.+++|++++++..+...+.+..+++.+
T Consensus        96 ~~E~~~~~W~~~~el~~~~~~~~~~~ii~~L  126 (129)
T d1puna_          96 GKEGQPGEWMSLVGLNADDFPPANEPVIAKL  126 (129)
T ss_dssp             TTSSSCCEEECGGGCCTTTSCGGGHHHHHHH
T ss_pred             CCccceEEEEEHHHcccCCCCcchHHHHHHH
Confidence            2356789999999998876556555665543

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=3.1e-16  Score=117.34  Aligned_cols=100  Identities=22%  Similarity=0.190  Sum_probs=72.7

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceecc-ceeccCCCCHHHHHHHHHHHHHcCccceeccc
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVEDQL  111 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~  111 (168)
                      .+..+.+++++.            +++|||.+|..     +|.|.+| ||+++.|||+.+||+||++||||++......+
T Consensus        29 ~h~~v~v~v~~~------------~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~~   96 (161)
T d2fkba1          29 RHRATYIVVHDG------------MGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEH   96 (161)
T ss_dssp             CEEEEEEEEECS------------SSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEE
T ss_pred             cEeEEEEEEEeC------------CCCEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEEE
Confidence            345677777653            33799988863     4889876 89999999999999999999999986433300


Q ss_pred             ------------------------cccCCCceeeEEEEeHhHHHhhcC--ChhHHHHHHHHHHH
Q 030947          112 ------------------------AEWPEKNVRSRKWMSVAEARKVCQ--HWWMKEALDRLVMR  149 (168)
Q Consensus       112 ------------------------~~~~e~e~~~~~W~~~~e~~~~~~--~~~~~~~l~~~~~~  149 (168)
                                              ......|..+++|++++|+.+++.  .|+...++..++++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ev~~~~w~~~~el~~~~~~~~P~~~~al~~~~~r  160 (161)
T d2fkba1          97 GQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKALALWMKR  160 (161)
T ss_dssp             EEEEEEETTEEEEEEEEEEECCCCCCCCTTTEEEEEEECHHHHHTTGGGBCHHHHHHHHHHHHH
T ss_pred             EEEEeecCCcEEEEEEEEEEECCCCcCChhHeeEEEEEeHHHHhhhhhccCCcHHHHHHHHHhc
Confidence                                    011234778899999999988753  36666666665543

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=1.2e-16  Score=120.09  Aligned_cols=87  Identities=25%  Similarity=0.231  Sum_probs=62.1

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceecccc---
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQLA---  112 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~~---  112 (168)
                      ..+++++++.             +++||+++.+    ...|.||||++++||++.+||+||++||||+.+.......   
T Consensus        25 ~aV~vl~~~~-------------~~vlLv~q~R~~~~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~~~~~l~~~~~   91 (158)
T d1v8ya_          25 PAVAVIALRE-------------GRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLTYLFSYFV   91 (158)
T ss_dssp             CEEEEEEEET-------------TEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEES
T ss_pred             CEEEEEEEEC-------------CEEEEEEeeecCCCCceEecchhhccccCCHHHHHHHHHHhhcCCcceeeeecceec
Confidence            4566777642             2799998753    3579999999999999999999999999999865433110   


Q ss_pred             ----------------------ccCCCceeeEEEEeHhHHHhhcCChhH
Q 030947          113 ----------------------EWPEKNVRSRKWMSVAEARKVCQHWWM  139 (168)
Q Consensus       113 ----------------------~~~e~e~~~~~W~~~~e~~~~~~~~~~  139 (168)
                                            ..++.|..++.|++++|+.+++....+
T Consensus        92 ~~g~~~~~~~~f~a~~~~~~~~~~d~~E~~ev~w~~~~e~~~~i~~g~i  140 (158)
T d1v8ya_          92 SPGFTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQRGEV  140 (158)
T ss_dssp             CTTTBCCEEEEEEEEEEEECC--------CEEEEECHHHHHHHHHTTSC
T ss_pred             CCCcceEEEEEEEEccccccccCCCCCeeEEEEEEEHHHHHHHHHCCCC
Confidence                                  012335667999999999998655443

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1e-15  Score=114.04  Aligned_cols=83  Identities=16%  Similarity=0.137  Sum_probs=63.2

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceec-cceeccCCCCHHHHHHHHHHHHHcCccceeccc--
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLF-PKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--  111 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~l-PgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--  111 (168)
                      .++++++|+.            ++++||.+|..     +|.|.+ |||+++.|||+.+||+||++||||++......+  
T Consensus         3 ra~~v~i~n~------------~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~~~   70 (153)
T d1hzta_           3 LAFSSWLFNA------------KGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYP   70 (153)
T ss_dssp             ECEEEEEECT------------TCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEET
T ss_pred             eEEEEEEEEC------------CCEEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccceec
Confidence            4567777764            33799999863     478887 999999999999999999999999986543300  


Q ss_pred             ------------------c----------ccCCCceeeEEEEeHhHHHhhc
Q 030947          112 ------------------A----------EWPEKNVRSRKWMSVAEARKVC  134 (168)
Q Consensus       112 ------------------~----------~~~e~e~~~~~W~~~~e~~~~~  134 (168)
                                        .          .....|..+++|++++|+.+.+
T Consensus        71 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ev~~~~W~~~~el~~~i  121 (153)
T d1hzta_          71 DFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGI  121 (153)
T ss_dssp             TCEEEEECTTSCEEEEECCEEEEEBCSCCCCCTTTEEEEEEECHHHHHHHH
T ss_pred             cccccccccccccceeEEEEEEEeeCCCccCChhheeEEEEeeHHHHHHHH
Confidence                              0          0022478899999999998764

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.58  E-value=3e-15  Score=115.21  Aligned_cols=73  Identities=27%  Similarity=0.295  Sum_probs=57.1

Q ss_pred             CceEEEEEEEeC-----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc------------------cc----
Q 030947           61 EDLEVLVISSQK-----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL------------------AE----  113 (168)
Q Consensus        61 ~~~~vLLv~r~~-----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~------------------~~----  113 (168)
                      ++.+|||++|..     .|.|+||||+++.||++.+||+||++||||++......+                  ..    
T Consensus        43 ~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~lg~l~~~~~~~~~~V~p~v~~l~~~  122 (187)
T d1nqza_          43 ADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFHVTPVLGRIAPE  122 (187)
T ss_dssp             SSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETTTEEEEEEEEEECGG
T ss_pred             CCCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEEeecccceeeccccEEEEEEEEECCc
Confidence            456899999873     589999999999999999999999999999986543300                  00    


Q ss_pred             -----cCCCceeeEEEEeHhHHHhh
Q 030947          114 -----WPEKNVRSRKWMSVAEARKV  133 (168)
Q Consensus       114 -----~~e~e~~~~~W~~~~e~~~~  133 (168)
                           .+..|..++.|++++++...
T Consensus       123 ~~~~~~~~~EV~~v~~vpl~~L~~~  147 (187)
T d1nqza_         123 ALDTLRVTPEVAQIITPTLAELRAV  147 (187)
T ss_dssp             GGGGCCCCTTEEEEECCBHHHHHHS
T ss_pred             cccccccCCcceEEEeccHHHHhcC
Confidence                 02337788999999998764

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.58  E-value=3.5e-15  Score=111.54  Aligned_cols=86  Identities=15%  Similarity=0.134  Sum_probs=63.7

Q ss_pred             ceeEEEEEEEEeeccccccccccCceEEEEEEEeC-----CCceecc-ceeccCCCCHHHHHHHHHHHHHcCccceeccc
Q 030947           38 RRQVVGCIPYRYKCVKQSLDINEEDLEVLVISSQK-----GKGMLFP-KGGWEIDESIQEAALRETIEEAGVTGIVEDQL  111 (168)
Q Consensus        38 ~r~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~-----~~~W~lP-gG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~  111 (168)
                      .+..+++++++.            ++++||.+|..     +|.|.+| ||+++.|||+.+||.||++||||+++......
T Consensus        27 ~~~~v~~~v~~~------------~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~~   94 (162)
T d2o5fa1          27 RVRVVNAFLRNS------------QGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWR   94 (162)
T ss_dssp             GSEEEEEEEECT------------TSCEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEEE
T ss_pred             eEEEEEEEEEcC------------CCCEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEEE
Confidence            345777777754            23788887742     4899777 99999999999999999999999987544300


Q ss_pred             -----c---------------------ccCCCceeeEEEEeHhHHHhhcC
Q 030947          112 -----A---------------------EWPEKNVRSRKWMSVAEARKVCQ  135 (168)
Q Consensus       112 -----~---------------------~~~e~e~~~~~W~~~~e~~~~~~  135 (168)
                           .                     .....|..++.|++++|+..++.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ev~~~~W~~~eel~~~~~  144 (162)
T d2o5fa1          95 PLASFSPFQTTLSSFMCVYELRSDATPIFNPNDISGGEWLTPEHLLARIA  144 (162)
T ss_dssp             EEEEECTTTSSCSSEEEEEEEECSSCCCCCTTTCSEEEEECHHHHHHHHH
T ss_pred             EEEEeccccccceEEEEEEEEecCCCccCChhHeeEEEEeeHHHHHHHHH
Confidence                 0                     01233677899999999988763

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7.6e-15  Score=120.25  Aligned_cols=118  Identities=15%  Similarity=0.102  Sum_probs=84.8

Q ss_pred             CceeEEEEEEEEeeccccc-cccc----cCceEEEEEEEeCCCceeccceeccCCCCHHHHHHHHHHHHHcCccceecc-
Q 030947           37 GRRQVVGCIPYRYKCVKQS-LDIN----EEDLEVLVISSQKGKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQ-  110 (168)
Q Consensus        37 ~~r~~~g~v~~~~~~~~~g-~v~~----~~~~~vLLv~r~~~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~-  110 (168)
                      +...++..|+-+.+...+| .+..    .+-++|||++|++.+.|.||||+|+.||++.+||+||+.||||+....... 
T Consensus       108 GpNhAadpivTR~~r~~~g~~~~~~~~g~~~LqvLlIkR~d~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~~~~~~  187 (292)
T d1q33a_         108 GPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAE  187 (292)
T ss_dssp             EEEEEEEEEEEEECBCTTSCBCBCTTTCSBCEEEEEEECTTTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSH
T ss_pred             CccccccEEEecccccCCCCeEEecCCCCceeEEEEEEecCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCccccccccc
Confidence            3457788888776543333 2222    234799999999999999999999999999999999999999997643210 


Q ss_pred             -----------------------------------------cc-----------ccCCCceeeEEEEeHhHHHhhcCChh
Q 030947          111 -----------------------------------------LA-----------EWPEKNVRSRKWMSVAEARKVCQHWW  138 (168)
Q Consensus       111 -----------------------------------------~~-----------~~~e~e~~~~~W~~~~e~~~~~~~~~  138 (168)
                                                               +.           .-+..|..+++|+++++++.+.  .+
T Consensus       188 ~~~~~~~l~~l~~~~~~~~y~gyvddprntd~aw~etva~~~h~~~~~~~~~~~l~~~dEa~~v~W~~vde~~~L~--~~  265 (292)
T d1q33a_         188 KREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLY--AS  265 (292)
T ss_dssp             HHHHHHHHHHHTTTSEEEEEEEECCCTTCCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCCS--TT
T ss_pred             ccccccceeeeccccccccccccccccCCCCCCEEEEEEEEEEEcccccccccccCCCCchheEEEEEhhccccch--hh
Confidence                                                     00           0012367789999999998763  44


Q ss_pred             HHHHHHHHHHHHhcccCC
Q 030947          139 MKEALDRLVMRLTSQQLH  156 (168)
Q Consensus       139 ~~~~l~~~~~~~~~~~~~  156 (168)
                      ..++++++.+++.+.+..
T Consensus       266 H~~il~~aa~~~~Ah~~e  283 (292)
T d1q33a_         266 HSQFIKLVAEKRDAHWSE  283 (292)
T ss_dssp             HHHHHHHHHHHHTCCCCS
T ss_pred             HHHHHHHHHHHHhccccC
Confidence            567788888887665433

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2.8e-15  Score=115.22  Aligned_cols=76  Identities=24%  Similarity=0.125  Sum_probs=59.1

Q ss_pred             EEEEEEEeCC----CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--------------------------cc
Q 030947           64 EVLVISSQKG----KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--------------------------AE  113 (168)
Q Consensus        64 ~vLLv~r~~~----~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--------------------------~~  113 (168)
                      ++||+++.+.    ..|.||||++++||++.+||+||++||||+.+.....+                          ..
T Consensus        60 ~vlLvrq~R~~~~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~l~~~~~~~g~~~~~~~~~~a~~~~~~~~~  139 (186)
T d1vhza_          60 HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLE  139 (186)
T ss_dssp             EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEEEEEEEEEEEECCCC
T ss_pred             EEEEEEeeecCCCceEeecccccCCCCcCHHHHHHHHHHHHhccccccceecceeeccccccceEEEEEEEEecccccCC
Confidence            7899987543    35999999999999999999999999999986544411                          01


Q ss_pred             cCCCceeeEEEEeHhHHHhhcCChhH
Q 030947          114 WPEKNVRSRKWMSVAEARKVCQHWWM  139 (168)
Q Consensus       114 ~~e~e~~~~~W~~~~e~~~~~~~~~~  139 (168)
                      .++.|..+..|++++++.+++....+
T Consensus       140 ~de~E~~~~~~~~~~e~~~~i~~g~i  165 (186)
T d1vhza_         140 GDEPEPLPQVRWPLAHMMDLLEDPDF  165 (186)
T ss_dssp             CCCSSCCCEEEEEGGGGGGGGGCTTT
T ss_pred             CCCCcEEEEEEEeHHHHHHHHHcCCC
Confidence            12346668999999999999866554

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=3.1e-15  Score=116.52  Aligned_cols=79  Identities=19%  Similarity=0.216  Sum_probs=56.8

Q ss_pred             CceEEEEEEEeCC----Cceeccceecc-CCCCHHHHHHHHHHHHHcCccceecccc--------------cc-------
Q 030947           61 EDLEVLVISSQKG----KGMLFPKGGWE-IDESIQEAALRETIEEAGVTGIVEDQLA--------------EW-------  114 (168)
Q Consensus        61 ~~~~vLLv~r~~~----~~W~lPgG~ve-~gEt~~~aA~REl~EEtGi~~~~~~~~~--------------~~-------  114 (168)
                      ++.+|||+++.+.    ..|.||+|+++ +||++.+||+||++||||+.+.....+.              .|       
T Consensus        48 ~~~~ilLvrq~R~~~~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~l~~~~~~~g~~~~~~~~fla~~~~~  127 (202)
T d1mqea_          48 DNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLRE  127 (202)
T ss_dssp             TTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCCEEEEEEEEEEE
T ss_pred             CCCEEEEEEecccccCceEEeccccccccCCCCHHHHHHHHHhhccccccccceEeeeeeccCccCCcEEEEEEEEeccc
Confidence            3448999988543    36999999999 7999999999999999999875444110              00       


Q ss_pred             -------CCCceeeEEEEeHhHHHhhcCChhH
Q 030947          115 -------PEKNVRSRKWMSVAEARKVCQHWWM  139 (168)
Q Consensus       115 -------~e~e~~~~~W~~~~e~~~~~~~~~~  139 (168)
                             ++.+..++.|++++|+.+++....+
T Consensus       128 ~~~~~~~~eee~i~v~w~~~~e~~~~i~~G~I  159 (202)
T d1mqea_         128 VGRPEAHHEEADMTMGWYPIAEAARRVLRGEI  159 (202)
T ss_dssp             CCC----------CEEEEEHHHHHHHHTTTSC
T ss_pred             cCCCCCCCccceEEEEEEEHHHHHHHHHcCCC
Confidence                   1112346899999999998764433

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=9.5e-14  Score=108.59  Aligned_cols=77  Identities=23%  Similarity=0.129  Sum_probs=57.5

Q ss_pred             ceEEEEEEEeCC---------CceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--------------ccc----
Q 030947           62 DLEVLVISSQKG---------KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--------------AEW----  114 (168)
Q Consensus        62 ~~~vLLv~r~~~---------~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--------------~~~----  114 (168)
                      ..+|+|+++.+.         ..|+||+|.+++||++.+||+||++||||+.+..+..+              ..|    
T Consensus        69 ~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~l~~~~~spg~~~e~~~~f~a~~  148 (209)
T d1g0sa_          69 RDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEV  148 (209)
T ss_dssp             TTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTTTBCCEEEEEEEEC
T ss_pred             CCeEEEEEEEeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccceeeccccccCCcccCCceEEEEEEE
Confidence            347999988642         25899999999999999999999999999987544411              000    


Q ss_pred             ------------CCCceeeEEEEeHhHHHhhcCChh
Q 030947          115 ------------PEKNVRSRKWMSVAEARKVCQHWW  138 (168)
Q Consensus       115 ------------~e~e~~~~~W~~~~e~~~~~~~~~  138 (168)
                                  ++.|..++.|++++|+.+++....
T Consensus       149 ~~~~~~~~~~~~de~E~iev~~v~~~e~~~~i~~g~  184 (209)
T d1g0sa_         149 DATTASGIHGLADENEDIRVHVVSREQAYQWVEEGK  184 (209)
T ss_dssp             CGGGCC--------CCSCEEEEEEHHHHHHHHHTTS
T ss_pred             ecccccCCCCCCCCCceeEEEEEeHHHHHHHHHcCC
Confidence                        122445789999999999875543

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.38  E-value=8.3e-13  Score=94.78  Aligned_cols=86  Identities=9%  Similarity=-0.002  Sum_probs=60.6

Q ss_pred             eEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceeccc--------------ccc------CCCc
Q 030947           63 LEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVEDQL--------------AEW------PEKN  118 (168)
Q Consensus        63 ~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~~~--------------~~~------~e~e  118 (168)
                      +++||.+|..    .|.|+||||.++.+|+ .+++.||++||+|+++.....+              ..|      ...+
T Consensus        16 g~iLl~kR~~~~~~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~~~l~~~~H~fsh~~~~~~~~~~~~~~~~~~   94 (127)
T d1rrqa2          16 GRVLIRKRDSTGLLANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVFPGRLVHGGPV   94 (127)
T ss_dssp             SEEEEEECCSSSTTTTCEECCEEECTTTCC-HHHHHHTTC----CEEEECSCCEEEEEECSSEEEEEEEEEEEEECCSCC
T ss_pred             CEEEEEECCCCCCCCCceecccccccCCCC-HHHHHHHhhhhcceEEEeccccccceEecCCeEEEEEEEEEEECCCCcc
Confidence            4899988865    3789999999997777 7899999999999987654411              011      1224


Q ss_pred             eeeEEEEeHhHHHhhcCChhHHHHHHHHHHH
Q 030947          119 VRSRKWMSVAEARKVCQHWWMKEALDRLVMR  149 (168)
Q Consensus       119 ~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~  149 (168)
                      ....+|++++++.++.....++.+++.+.++
T Consensus        95 ~~~~~Wv~~~el~~~~~p~~~~Ki~~~~~~~  125 (127)
T d1rrqa2          95 EEPYRLAPEDELKAYAFPVSHQRVWREYKEW  125 (127)
T ss_dssp             CTTEEEEEGGGGGGSCCCHHHHHHHHHHHHH
T ss_pred             ccceEEeeHHHHhHCCCChHHHHHHHHHHHh
Confidence            4568999999999987777777777776654

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.32  E-value=2.2e-12  Score=99.93  Aligned_cols=69  Identities=17%  Similarity=0.143  Sum_probs=51.0

Q ss_pred             CCceeEEEEEEEEeeccccccccc--cCceEEEEEEEeCCCceeccceeccCCCC-HHHHHHHHHHHHHcCcccee
Q 030947           36 KGRRQVVGCIPYRYKCVKQSLDIN--EEDLEVLVISSQKGKGMLFPKGGWEIDES-IQEAALRETIEEAGVTGIVE  108 (168)
Q Consensus        36 ~~~r~~~g~v~~~~~~~~~g~v~~--~~~~~vLLv~r~~~~~W~lPgG~ve~gEt-~~~aA~REl~EEtGi~~~~~  108 (168)
                      +++|..+.++++..+   .+++..  ..+..|||.+ +..|.|.||||+++.||+ +++||.||++||||+.+...
T Consensus        17 ~g~r~a~~~~~~~~~---~~~~~~~~~~~~~vl~~~-r~~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~   88 (196)
T d1u20a1          17 EGYKHACHALLHAPS---QAKLFDRVPIRRVLLMMM-RFDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATV   88 (196)
T ss_dssp             SSCEEEEEEEEEEEC---CCEETTTEECCEEEEEEE-ETTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGC
T ss_pred             CCcceEEEEEEEcCC---CceEEEEecCCcEEEEEE-ecCCcEECCccccCCCCCcHHHHHHHHHHHHhCccceeE
Confidence            368888888888765   332211  1334566655 456899999999999996 67899999999999986543

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=2.2e-11  Score=93.42  Aligned_cols=88  Identities=14%  Similarity=0.054  Sum_probs=60.1

Q ss_pred             eEEEEEEEEeeccccccccccCceEEEEEEEeCC----------CceeccceeccCCCCHHHHHHHHHHHHHcCccceec
Q 030947           40 QVVGCIPYRYKCVKQSLDINEEDLEVLVISSQKG----------KGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED  109 (168)
Q Consensus        40 ~~~g~v~~~~~~~~~g~v~~~~~~~vLLv~r~~~----------~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~  109 (168)
                      ..|++|++..           ...+|||+++.+.          ..|.+|+|.++ ||++.+||+||+.||||+.+..+.
T Consensus        44 ~aV~Vl~~~~-----------~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~  111 (189)
T d1viua_          44 NGATILLYNT-----------KKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVR  111 (189)
T ss_dssp             CEEEEEEEET-----------TTTEEEEEEEECHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCE
T ss_pred             CEEEEEEEEc-----------CCCEEEEEEeeccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEE
Confidence            3566666653           2347999988531          24778999887 777899999999999999865433


Q ss_pred             cc--------------ccc---------------CCCceeeEEEEeHhHHHhhcCChhH
Q 030947          110 QL--------------AEW---------------PEKNVRSRKWMSVAEARKVCQHWWM  139 (168)
Q Consensus       110 ~~--------------~~~---------------~e~e~~~~~W~~~~e~~~~~~~~~~  139 (168)
                      .+              +.|               .+.|..++.|++++|+.+++....+
T Consensus       112 ~lg~~~~spG~~~e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~~~e~~~~i~~g~i  170 (189)
T d1viua_         112 KLFELYMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEI  170 (189)
T ss_dssp             EEEEEESCTTTBCCEEEEEEEECCTTCC---------CCEEEEEEEHHHHHHHHHHTSC
T ss_pred             EcceeecCccccCceEEEEEEEECCcccccCCCCCCCccEEEEEEEHHHHHHHHHcCCC
Confidence            10              000               1224557899999999998754443

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=7e-09  Score=74.55  Aligned_cols=86  Identities=15%  Similarity=0.208  Sum_probs=59.8

Q ss_pred             ceEEEEEEEeC----CCceeccceeccCCCCHHHHHHHHHHHHHcCccceec---------c-------cccc-------
Q 030947           62 DLEVLVISSQK----GKGMLFPKGGWEIDESIQEAALRETIEEAGVTGIVED---------Q-------LAEW-------  114 (168)
Q Consensus        62 ~~~vLLv~r~~----~~~W~lPgG~ve~gEt~~~aA~REl~EEtGi~~~~~~---------~-------~~~~-------  114 (168)
                      +.+|||.+|..    .|.|+||+|.++.+|+..++|.||..+|.+.......         .       +..|       
T Consensus        26 ~~~iLl~kR~~~g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~~~v~H~fsH~~~~~~v~~~~~~~~  105 (142)
T d1x51a1          26 GAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSHIKLTYQVYGLALEGQ  105 (142)
T ss_dssp             SEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSSCEEEEEEEEEECSSC
T ss_pred             CCEEEEEECCCCCCCCcceeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeeeeccceeccCCcceEEEEEEEEEeCC
Confidence            45899999964    3799999999999999998888776666654322111         0       0000       


Q ss_pred             --CCCceeeEEEEeHhHHHhhcCChhHHHHHHHHH
Q 030947          115 --PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV  147 (168)
Q Consensus       115 --~e~e~~~~~W~~~~e~~~~~~~~~~~~~l~~~~  147 (168)
                        ...+..+.+|++++++.++.....++.+++.+.
T Consensus       106 ~~~~~~~~~~~W~~~~el~~~~lp~~~~Kil~~~~  140 (142)
T d1x51a1         106 TPVTTVPPGARWLTQEEFHTAAVSTAMKKVFRVYQ  140 (142)
T ss_dssp             CCCCCCCTTEEEEEHHHHHHSCCCHHHHHHHHHHH
T ss_pred             CcccccCccCEEeeHHHccccCCCHHHHHHHHHHh
Confidence              112456789999999999877776666665543