Citrus Sinensis ID: 030962

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Secondary Structure (PSIPRED)
cccccEEEEEcccccEEEEcHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEccccEEEEcHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
msspkmivlkscdgesfEVEEAVALESTTIKHMieddcadngiplpnvTGKILAKVVEYCKKhvevpttqdsntsgansngaatnggeedlkswdtdfVKVDQATLFDLILAANYLNIKGLLDLTCQTVADmikgktpeEIRKTFnikndftpeeEEEVRRENQWAFE
Flexible Loop (DISEMBL)
msspkmivlkscdgesfEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVevpttqdsntsgansngaATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIkgktpeeirktfnikndftpeeeeevrrenqwafe
Low Complexity Region (SEG)
MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDsntsgansngaatnggEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPeeeeevrreNQWAFE
Disordered region (IsUnstruct)
*******VLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVE***************************SWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGK********************************
Disordered Region (DISOPRED)
***PKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEE*EEVRRENQWAFE
Disordered Region (DISEMBL)
MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT****************
Disordered Region (DISPRO)
****KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVE***********************EDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q39255	160	SKP1-like protein 1A OS=A	yes	no	0.946	0.993	0.759	1e-63
Q9FHW7	171	SKP1-like protein 1B OS=A	no	no	1.0	0.982	0.736	5e-63
Q9LNT9	163	SKP1-like protein 4 OS=Ar	no	no	0.952	0.981	0.698	7e-63
Q9SL93	163	SKP1-like protein 3 OS=Ar	no	no	0.940	0.969	0.678	2e-61
O49484	152	SKP1-like protein 11 OS=A	no	no	0.898	0.993	0.668	6e-58
O65674	152	SKP1-like protein 12 OS=A	no	no	0.892	0.986	0.658	7e-57
Q9LSX8	152	SKP1-like protein 10 OS=A	no	no	0.898	0.993	0.608	1e-50
Q9M1X5	154	SKP1-like protein 13 OS=A	no	no	0.892	0.974	0.602	2e-49
Q9LSX9	153	SKP1-like protein 9 OS=Ar	no	no	0.898	0.986	0.586	5e-49
O81057	149	SKP1-like protein 14 OS=A	no	no	0.880	0.993	0.603	3e-48

>sp|Q39255|SKP1A_ARATH SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1

 Score =  242 bits (617), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 126/166 (75%), Positives = 140/166 (84%), Gaps = 7/166 (4%)

Query: 3   SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKK 62
           S K IVLKS DGESFEVEEAVALES TI HM+EDDC DNG+PLPNVT KILAKV+EYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLL 122
           HVE   ++     GA ++       ++DLK+WD DF+K+DQATLF+LILAANYLNIK LL
Sbjct: 62  HVEAAASKAEAVEGAATS-------DDDLKAWDADFMKIDQATLFELILAANYLNIKNLL 114

Query: 123 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           DLTCQTVADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 115 DLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1. SCF(UFO) is required for vegetative and floral organ development as well as for male gametogenesis. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1), SCF(ADO2), SCF(ADO3) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling. Plays a role during embryogenesis and early postembryonic development, especially during cell elongation and division. Contributes to the correct chromosome segregation during tetrad formation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHW7|SKP1B_ARATH SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1

 Score =  239 bits (611), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 126/171 (73%), Positives = 143/171 (83%), Gaps = 3/171 (1%)

Query: 1   MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYC 60
           MS+ + I LKS DGE+FE++EAVALES TIKHMIEDDC DNGIPLPNVT KIL+KV+EYC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVEVPTTQDSNTSGANSNGAA---TNGGEEDLKSWDTDFVKVDQATLFDLILAANYLN 117
           K+HVE     ++    A +       +   +EDLK+WD++F+KVDQ TLFDLILAANYLN
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 118 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1. SCF(UFO) is required for vegetative and floral organ development as well as for male gametogenesis. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1), SCF(ADO2), SCF(ADO3) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling. Plays a role during embryogenesis and early postembryonic development, especially during cell elongation and division. Contributes to the correct chromosome segregation during tetrad formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNT9|ASK4_ARATH SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1

 Score =  239 bits (610), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 116/166 (69%), Positives = 137/166 (82%), Gaps = 6/166 (3%)

Query: 3   SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKK 62
           + KMI+LKS DGESFE+EEAVA++S TIKHMIEDDCADNGIPLPNVTG ILAKV+EYCKK
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLL 122
           HVE       +    +  G+A N   ++LK+WD++FVKVDQ TLFDLILAANYLNI GLL
Sbjct: 64  HVEAAAEAGGDK---DFYGSAEN---DELKNWDSEFVKVDQPTLFDLILAANYLNIGGLL 117

Query: 123 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           DLTC+ VAD ++GKTPE++R  FNIKND+TPEEE EVR EN+WAFE
Sbjct: 118 DLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SL93|ASK3_ARATH SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1

 Score =  234 bits (596), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/168 (67%), Positives = 131/168 (77%), Gaps = 10/168 (5%)

Query: 3   SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKK 62
           + KMI+LKS DGESFEVEEAVA+ES TIKHMIEDDC DNGIPLPNVTG ILAKV+EYCKK
Sbjct: 4   TKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKK 63

Query: 63  HVEVPTTQ--DSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKG 120
           HVE       D +  G+  N         +LK+WD DFVKVD  TLFDL+ AANYLNI G
Sbjct: 64  HVEAAAEAGGDKDFYGSTEN--------HELKTWDNDFVKVDHPTLFDLLRAANYLNISG 115

Query: 121 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           LLDLTC+ VAD ++GKTP ++R+ FNIKND+TPEEE EVR EN+WAFE
Sbjct: 116 LLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|O49484|ASK11_ARATH SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1

 Score =  223 bits (567), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 111/166 (66%), Positives = 127/166 (76%), Gaps = 15/166 (9%)

Query: 3   SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKK 62
           S KMIVL S DG+SFEVEEAVA++S TI HM+EDDC  +GIPL NV  KIL KV+EYCKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLL 122
           H         +   AN         EEDL +WD  F+ ++Q+T+F+LILAANYLNIK LL
Sbjct: 62  H---------HVDEANP------ISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLL 106

Query: 123 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           DLTCQTVADMIKGKTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 107 DLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Plays a role during early flowers reproductive development.

Arabidopsis thaliana (taxid: 3702)

>sp|O65674|ASK12_ARATH SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1

 Score =  219 bits (557), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 110/167 (65%), Positives = 125/167 (74%), Gaps = 17/167 (10%)

Query: 3   SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKK 62
           S KMIVL S DG+SFEVEEAVA++S TI HM+EDDC  +GIPL NV  KIL KV+EYCKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGL 121
            HV+                 A    EEDL  WD  F+ ++Q+T+F+LILAANYLNIK L
Sbjct: 62  YHVD----------------EANPISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSL 105

Query: 122 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
            DLTCQTVADMIKGKTPEEIR TFNI+NDFTPEEEE VR+ENQWAFE
Sbjct: 106 FDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Plays a role during early flowers reproductive development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSX8|ASK10_ARATH SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=1

 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 113/166 (68%), Gaps = 15/166 (9%)

Query: 3   SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKK 62
           S K I+LKS DG SFEVEE  A +  TI HM EDDC DNGIPLP VTGKIL  V+EYC K
Sbjct: 2   STKKIILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNK 61

Query: 63  HVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLL 122
           H                  AA    +EDLK WD +F++  Q+T+FDLI+AANYLNIK LL
Sbjct: 62  H---------------HVDAANPCSDEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLL 106

Query: 123 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           DL CQTVADMIK  T E  RK FNI+ND+T EEEE VRRENQW FE
Sbjct: 107 DLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1X5|ASK13_ARATH SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1

 Score =  194 bits (493), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 100/166 (60%), Positives = 123/166 (74%), Gaps = 16/166 (9%)

Query: 5   KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHV 64
           KM++L S DGESF+VEEAVA++S TI HMIEDDC  NG+P+ NVTG IL+KV+EYCKKHV
Sbjct: 3   KMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHV 62

Query: 65  EVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKV--DQATLFDLILAANYLNIKGLL 122
                          + + T   +++LK WD +F+K     +TLFD++LAANYLNIK LL
Sbjct: 63  --------------VSDSPTEESKDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLL 108

Query: 123 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           DL CQTVADMI GK P+EIR    I+NDFTPEEEEE+R+ENQWAFE
Sbjct: 109 DLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSX9|ASK9_ARATH SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1

 Score =  193 bits (490), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 116/167 (69%), Gaps = 16/167 (9%)

Query: 3   SPKMIVLKSCDGESFEVEEAVALE-STTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCK 61
           S K I+LKS DG SFEVEE  A +    I HM E+DC DNGIPLPNVTGKILA V+EYC 
Sbjct: 2   STKKIILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEYCN 61

Query: 62  KHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGL 121
           KH                  AA    ++DLK WD +F++ D +T+FDLI AANYLNIK L
Sbjct: 62  KH---------------HVDAANPCSDDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSL 106

Query: 122 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
            DL CQTVA++IKG TPE+IR+ FNI+ND TPEEE  +RREN+WAFE
Sbjct: 107 FDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|O81057|ASK14_ARATH SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1

 Score =  191 bits (484), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 102/169 (60%), Positives = 119/169 (70%), Gaps = 21/169 (12%)

Query: 1   MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYC 60
           MSS K IVL S DGESFEVEEAVA +   ++HMIEDDC    +PL NVTGKIL+ VVEYC
Sbjct: 1   MSSNK-IVLSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYC 59

Query: 61  KKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVK-VDQATLFDLILAANYLNIK 119
           KKHV                    +   ++ K+WD +F+K  DQ T+F L+LAANYLNIK
Sbjct: 60  KKHV-------------------VDEESDEFKTWDEEFMKKFDQPTVFQLLLAANYLNIK 100

Query: 120 GLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           GLLDL+ QTVAD IK KTPEEIR+ FNI+NDFTPEEE  VR+EN WAFE
Sbjct: 101 GLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
118489534	158	unknown [Populus trichocarpa x Populus d	0.940	1.0	0.803	1e-66
224134024	158	predicted protein [Populus trichocarpa]	0.940	1.0	0.803	3e-66
225428047	155	PREDICTED: SKP1-like protein 1A [Vitis v	0.922	1.0	0.732	1e-65
392499473	156	GSK1 [Gossypium hirsutum] gi|399912953|g	0.916	0.987	0.808	2e-65
227184175	158	SKP1-like protein [Citrus maxima]	0.940	1.0	0.755	6e-65
357156821	181	PREDICTED: SKP1-like protein 1B-like iso	0.970	0.900	0.767	6e-64
356496612	155	PREDICTED: SKP1-like protein 1A-like [Gl	0.922	1.0	0.791	8e-64
225457883	156	PREDICTED: SKP1-like protein 1B isoform	0.928	1.0	0.779	9e-64
255539024	157	skp1, putative [Ricinus communis] gi|223	0.934	1.0	0.779	1e-63
224083123	157	predicted protein [Populus trichocarpa]	0.934	1.0	0.773	2e-63

>gi|118489534|gb|ABK96569.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 135/168 (80%), Positives = 147/168 (87%), Gaps = 10/168 (5%)

Query: 1   MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYC 60
           MSS + I L+S DGESFEV+EAVALES TIKHMIEDDCADNGIPLPNVT KILAKV+EYC
Sbjct: 1   MSSGRKISLRSSDGESFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  KKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKG 120
           KKHVE P ++D            TN G+++LK+WDT+FV+VDQATLFDLILAANYLNIKG
Sbjct: 61  KKHVETPKSEDR----------GTNSGDDELKNWDTEFVRVDQATLFDLILAANYLNIKG 110

Query: 121 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 111 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134024|ref|XP_002327737.1| predicted protein [Populus trichocarpa] gi|118481562|gb|ABK92723.1| unknown [Populus trichocarpa] gi|222836822|gb|EEE75215.1| predicted protein [Populus trichocarpa]

 Score =  256 bits (654), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 135/168 (80%), Positives = 146/168 (86%), Gaps = 10/168 (5%)

Query: 1   MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYC 60
           MSS + I L+S DGESFEV+EAVALES TIKHMIEDDCADNGIPLPNVT KILAKV+EYC
Sbjct: 1   MSSGRKISLRSSDGESFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  KKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKG 120
           KKHVE P  +D            TN G+++LK+WDT+FV+VDQATLFDLILAANYLNIKG
Sbjct: 61  KKHVETPKPEDR----------GTNSGDDELKNWDTEFVRVDQATLFDLILAANYLNIKG 110

Query: 121 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 111 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428047|ref|XP_002279232.1| PREDICTED: SKP1-like protein 1A [Vitis vinifera] gi|147820987|emb|CAN73136.1| hypothetical protein VITISV_023042 [Vitis vinifera]

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 138/168 (82%), Gaps = 13/168 (7%)

Query: 1   MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYC 60
           M+S K I L+S DGE+F++EE VA+ES TIKHMIED CADN IPLPNVT KILAKV+EYC
Sbjct: 1   MASSKTITLRSSDGEAFDLEEVVAVESQTIKHMIEDGCADNAIPLPNVTSKILAKVIEYC 60

Query: 61  KKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKG 120
           KKHVE P  ++             +   ++LK+WD DFVKVDQATLFDLILAANYL+IK 
Sbjct: 61  KKHVETPKAEE-------------HAVNDELKAWDADFVKVDQATLFDLILAANYLDIKS 107

Query: 121 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEE+VRRENQWAFE
Sbjct: 108 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEDVRRENQWAFE 155

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|392499473|gb|AFM75900.1| GSK1 [Gossypium hirsutum] gi|399912953|gb|AFP55363.1| SKP1-like protein [Gossypium hirsutum]

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 135/167 (80%), Positives = 141/167 (84%), Gaps = 13/167 (7%)

Query: 2   SSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCK 61
           SS + I LKS DGESFEV+EAVALES TIKHMIEDDCADNGIPLPNVT KILAKV+EYCK
Sbjct: 3   SSGRKITLKSSDGESFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILAKVIEYCK 62

Query: 62  KHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGL 121
           KHVE P T D                +++LKSWD DFVKVDQATLFDLILAANYLNIKGL
Sbjct: 63  KHVEAPKTDD-------------RSADDELKSWDADFVKVDQATLFDLILAANYLNIKGL 109

Query: 122 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 110 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227184175|gb|ACP20181.1| SKP1-like protein [Citrus maxima]

 Score =  251 bits (642), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 137/168 (81%), Gaps = 10/168 (5%)

Query: 1   MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYC 60
           MSS K I LKS DGE+FEVEE VALES TIKH +EDDCAD  IPLPNVT  IL+KV+EYC
Sbjct: 1   MSSEKKITLKSSDGETFEVEETVALESQTIKHTVEDDCADTVIPLPNVTSTILSKVIEYC 60

Query: 61  KKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKG 120
           KKHVE         SG   +  +T    +DLK+WD DFVKVDQ TLFDLILAANYLNIKG
Sbjct: 61  KKHVEAG-------SGDKKDDKSTV---DDLKTWDADFVKVDQNTLFDLILAANYLNIKG 110

Query: 121 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           LLDLTCQTVADMIKGKTPEEIRKTFNIKNDF+P+EEEEVRRENQWAFE
Sbjct: 111 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPDEEEEVRRENQWAFE 158

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357156821|ref|XP_003577587.1| PREDICTED: SKP1-like protein 1B-like isoform 1 [Brachypodium distachyon] gi|357156824|ref|XP_003577588.1| PREDICTED: SKP1-like protein 1B-like isoform 2 [Brachypodium distachyon]

 Score =  248 bits (633), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 132/172 (76%), Positives = 142/172 (82%), Gaps = 9/172 (5%)

Query: 5   KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHV 64
           KMI LKS DGE FEVEE VA+ES TI+HMIEDDCADNGIPLPNV  KIL+KV+EYC KHV
Sbjct: 11  KMITLKSSDGEEFEVEETVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHV 70

Query: 65  EV--------PTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYL 116
                     P+  D+N + AN N + T    EDLK+WD DFVKVDQATLFDLILAANYL
Sbjct: 71  HATAAAKAANPSDGDANPAAAN-NSSTTAAPGEDLKNWDADFVKVDQATLFDLILAANYL 129

Query: 117 NIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           NIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE+RRENQWAFE
Sbjct: 130 NIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 181

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496612|ref|XP_003517160.1| PREDICTED: SKP1-like protein 1A-like [Glycine max]

 Score =  248 bits (632), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 133/168 (79%), Positives = 140/168 (83%), Gaps = 13/168 (7%)

Query: 1   MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYC 60
           MSS K I LKS DGE+FEV+EAVALES TIKHMIEDDCAD+GIPLPNVT KILAKV+EYC
Sbjct: 1   MSSAKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYC 60

Query: 61  KKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKG 120
           KKHVE    +D                E+DLK+WD DFVKVDQATLFDLILAANYLNIK 
Sbjct: 61  KKHVEAANPED-------------KPSEDDLKAWDADFVKVDQATLFDLILAANYLNIKS 107

Query: 121 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 108 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457883|ref|XP_002270061.1| PREDICTED: SKP1-like protein 1B isoform 2 [Vitis vinifera] gi|147788379|emb|CAN76662.1| hypothetical protein VITISV_040452 [Vitis vinifera]

 Score =  248 bits (632), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 131/168 (77%), Positives = 143/168 (85%), Gaps = 12/168 (7%)

Query: 1   MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYC 60
           MSS + I LKS DGE+F+V+EAVALES TIKHMIEDDCADNGIPLPNVT KIL+KV+EYC
Sbjct: 1   MSSSRKITLKSSDGEAFDVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKG 120
           KKHVE P  ++ +            G +E+LK+WD DFVKVDQATLFDLILAANYLNIK 
Sbjct: 61  KKHVEAPKPEERS------------GVDEELKAWDADFVKVDQATLFDLILAANYLNIKS 108

Query: 121 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 109 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539024|ref|XP_002510577.1| skp1, putative [Ricinus communis] gi|223551278|gb|EEF52764.1| skp1, putative [Ricinus communis]

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 131/168 (77%), Positives = 143/168 (85%), Gaps = 11/168 (6%)

Query: 1   MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYC 60
           MS+ K I LKS DGE+FEVEE VALES TIKHMIEDDCAD+GIPLPNVT KIL+KV+EYC
Sbjct: 1   MSAGKKITLKSSDGETFEVEELVALESQTIKHMIEDDCADSGIPLPNVTSKILSKVIEYC 60

Query: 61  KKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKG 120
           KKHVE P ++D  +S            ++DLK+WD +FVKVDQATLFDLILAANYLNIK 
Sbjct: 61  KKHVETPKSEDRPSSA-----------DDDLKAWDAEFVKVDQATLFDLILAANYLNIKS 109

Query: 121 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 110 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083123|ref|XP_002306950.1| predicted protein [Populus trichocarpa] gi|118487452|gb|ABK95554.1| unknown [Populus trichocarpa] gi|222856399|gb|EEE93946.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 130/168 (77%), Positives = 142/168 (84%), Gaps = 11/168 (6%)

Query: 1   MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYC 60
           MS+ +  +LKS DGESFEV+EAVA+ES TIKHMIEDDCADNGIPLPNVT K+LAKV+EYC
Sbjct: 1   MSTGRKFILKSSDGESFEVDEAVAVESQTIKHMIEDDCADNGIPLPNVTSKVLAKVIEYC 60

Query: 61  KKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKG 120
           KKHVE P + D  +S A           +DLK+WD +FVKVDQATLFDLILAANYLNIK 
Sbjct: 61  KKHVESPKSDDRPSSAA-----------DDLKAWDAEFVKVDQATLFDLILAANYLNIKN 109

Query: 121 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           LLDLTCQ VADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 110 LLDLTCQRVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2165825	171	ASK2 "AT5G42190" [Arabidopsis	0.994	0.976	0.691	1.3e-59
TAIR|locus:2204435	160	SKP1 "AT1G75950" [Arabidopsis	0.946	0.993	0.692	3.6e-57
TAIR|locus:2198621	163	SK4 "AT1G20140" [Arabidopsis t	0.940	0.969	0.646	1e-52
TAIR|locus:2050281	163	SK3 "AT2G25700" [Arabidopsis t	0.940	0.969	0.634	2.4e-51
TAIR|locus:2124281	152	SK11 "AT4G34210" [Arabidopsis	0.904	1.0	0.625	9.8e-48
TAIR|locus:2139504	152	SK12 "AT4G34470" [Arabidopsis	0.898	0.993	0.615	6.9e-47
TAIR|locus:2056956	149	SK14 "AT2G03170" [Arabidopsis	0.476	0.536	0.629	9.6e-44
TAIR|locus:2080532	154	SK13 "AT3G60010" [Arabidopsis	0.880	0.961	0.565	1.2e-42
TAIR|locus:2056966	200	SK19 "AT2G03160" [Arabidopsis	0.482	0.405	0.536	7.5e-42
TAIR|locus:2093084	153	SK9 "AT3G21850" [Arabidopsis t	0.898	0.986	0.544	5.9e-41

TAIR|locus:2165825 ASK2 "AT5G42190" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 119/172 (69%), Positives = 132/172 (76%)

Query:     1 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYC 60
             MS+ + I LKS DGE+FE++EAVALES TIKHMIEDDC DNGIPLPNVT KIL+KV+EYC
Sbjct:     1 MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query:    61 KKHVEVP----TTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYL 116
             K+HVE      TT D                +EDLK+WD++F+KVDQ TLFDLILAANYL
Sbjct:    61 KRHVEAAEKSETTADAAAATTTTTVASGSS-DEDLKTWDSEFIKVDQGTLFDLILAANYL 119

Query:   117 NIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 168
             NIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP         NQWAFE
Sbjct:   120 NIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=NAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;RCA;TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2204435 SKP1 "AT1G75950" [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 115/166 (69%), Positives = 127/166 (76%)

Query:     3 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKK 62
             S K IVLKS DGESFEVEEAVALES TI HM+EDDC DNG+PLPNVT KILAKV+EYCK+
Sbjct:     2 SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query:    63 HVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLL 122
             HVE   ++                 ++DLK+WD DF+K+DQATLF+LILAANYLNIK LL
Sbjct:    62 HVEAAASK-------AEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLL 114

Query:   123 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 168
             DLTCQTVADMIKGKTPEEIR TFNIKNDFTP         NQWAFE
Sbjct:   115 DLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA;NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0007140 "male meiosis" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS

GO:0000151 "ubiquitin ligase complex" evidence=TAS

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0045910 "negative regulation of DNA recombination" evidence=IMP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0007067 "mitosis" evidence=RCA;TAS

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2198621 SK4 "AT1G20140" [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 106/164 (64%), Positives = 123/164 (75%)

Query:     5 KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHV 64
             KMI+LKS DGESFE+EEAVA++S TIKHMIEDDCADNGIPLPNVTG ILAKV+EYCKKHV
Sbjct:     6 KMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHV 65

Query:    65 EVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDL 124
             E                       ++LK+WD++FVKVDQ TLFDLILAANYLNI GLLDL
Sbjct:    66 EA------AAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDL 119

Query:   125 TCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 168
             TC+ VAD ++GKTPE++R  FNIKND+TP         N+WAFE
Sbjct:   120 TCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2050281 SK3 "AT2G25700" [Arabidopsis thaliana (taxid:3702)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 104/164 (63%), Positives = 118/164 (71%)

Query:     5 KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHV 64
             KMI+LKS DGESFEVEEAVA+ES TIKHMIEDDC DNGIPLPNVTG ILAKV+EYCKKHV
Sbjct:     6 KMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHV 65

Query:    65 EVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDL 124
             E                        +LK+WD DFVKVD  TLFDL+ AANYLNI GLLDL
Sbjct:    66 EA------AAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDL 119

Query:   125 TCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 168
             TC+ VAD ++GKTP ++R+ FNIKND+TP         N+WAFE
Sbjct:   120 TCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2124281 SK11 "AT4G34210" [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 105/168 (62%), Positives = 119/168 (70%)

Query:     1 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYC 60
             MSS KMIVL S DG+SFEVEEAVA++S TI HM+EDDC  +GIPL NV  KIL KV+EYC
Sbjct:     1 MSS-KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYC 59

Query:    61 KKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKG 120
             KKH  V                     EEDL +WD  F+ ++Q+T+F+LILAANYLNIK 
Sbjct:    60 KKH-HVDEANPIS--------------EEDLNNWDEKFMDLEQSTIFELILAANYLNIKS 104

Query:   121 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 168
             LLDLTCQTVADMIKGKTPEEIR TFNI+NDFTP         NQWAFE
Sbjct:   105 LLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2139504 SK12 "AT4G34470" [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 104/169 (61%), Positives = 118/169 (69%)

Query:     1 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYC 60
             MSS KMIVL S DG+SFEVEEAVA++S TI HM+EDDC  +GIPL NV  KIL KV+EYC
Sbjct:     1 MSS-KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYC 59

Query:    61 KK-HVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIK 119
             KK HV+                      EEDL  WD  F+ ++Q+T+F+LILAANYLNIK
Sbjct:    60 KKYHVDEANP----------------ISEEDLNKWDEKFMDLEQSTIFELILAANYLNIK 103

Query:   120 GLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 168
              L DLTCQTVADMIKGKTPEEIR TFNI+NDFTP         NQWAFE
Sbjct:   104 SLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2056956 SK14 "AT2G03170" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 51/81 (62%), Positives = 61/81 (75%)

Query:    89 EDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNI 147
             ++ K+WD +F+K  DQ T+F L+LAANYLNIKGLLDL+ QTVAD IK KTPEEIR+ FNI
Sbjct:    69 DEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNI 128

Query:   148 KNDFTPXXXXXXXXXNQWAFE 168
             +NDFTP         N WAFE
Sbjct:   129 ENDFTPEEEAAVRKENAWAFE 149

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2080532 SK13 "AT3G60010" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 95/168 (56%), Positives = 118/168 (70%)

Query:     5 KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHV 64
             KM++L S DGESF+VEEAVA++S TI HMIEDDC  NG+P+ NVTG IL+KV+EYCKKHV
Sbjct:     3 KMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHV 62

Query:    65 --EVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVK-VDQA-TLFDLILAANYLNIKG 120
               + PT +                 +++LK WD +F+K ++Q+ TLFD++LAANYLNIK 
Sbjct:    63 VSDSPTEES----------------KDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKD 106

Query:   121 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 168
             LLDL CQTVADMI GK P+EIR    I+NDFTP         NQWAFE
Sbjct:   107 LLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2056966 SK19 "AT2G03160" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
 Identities = 44/82 (53%), Positives = 55/82 (67%)

Query:    88 EEDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFN 146
             +E L  WD  F+K  D  T+FD+ILAANYLN++GL DL  +T+AD IK  TPEE+R+ FN
Sbjct:   109 KEKLNEWDAKFMKDFDIKTIFDIILAANYLNVQGLFDLCSKTIADYIKDMTPEEVRELFN 168

Query:   147 IKNDFTPXXXXXXXXXNQWAFE 168
             I+NDFTP         N W FE
Sbjct:   169 IENDFTPEEEEAIRNENAWTFE 190

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2093084 SK9 "AT3G21850" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 91/167 (54%), Positives = 108/167 (64%)

Query:     3 SPKMIVLKSCDGESFEVEEAVALE-STTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCK 61
             S K I+LKS DG SFEVEE  A +    I HM E+DC DNGIPLPNVTGKILA V+EYC 
Sbjct:     2 STKKIILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEYCN 61

Query:    62 KHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGL 121
             KH  V                     ++DLK WD +F++ D +T+FDLI AANYLNIK L
Sbjct:    62 KH-HVDAANPCS--------------DDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSL 106

Query:   122 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 168
              DL CQTVA++IKG TPE+IR+ FNI+ND TP         N+WAFE
Sbjct:   107 FDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3ZCF3	SKP1_BOVIN	No assigned EC number	0.5449	0.9166	0.9447	yes	no
Q0CA59	SKP1_ASPTN	No assigned EC number	0.5087	0.9404	0.9813	N/A	no
Q5KU00	SKP1_ASPOR	No assigned EC number	0.5088	0.9226	0.9627	yes	no
Q8TGW7	SKP1_ARTOT	No assigned EC number	0.5092	0.8988	0.9151	N/A	no
Q6PEC4	SKP1_RAT	No assigned EC number	0.5449	0.9166	0.9447	yes	no
Q4R5B9	SKP1_MACFA	No assigned EC number	0.5449	0.9166	0.9447	N/A	no
Q8NK13	SKP1_NEUCR	No assigned EC number	0.5180	0.8988	0.8830	N/A	no
A1C9U5	SKP1_ASPCL	No assigned EC number	0.5090	0.9047	0.9559	N/A	no
B8MDP8	SKP1_TALSN	No assigned EC number	0.5031	0.9047	0.95	N/A	no
Q9WTX5	SKP1_MOUSE	No assigned EC number	0.5449	0.9166	0.9447	yes	no
Q9FHW7	SKP1B_ARATH	No assigned EC number	0.7368	1.0	0.9824	no	no
Q71U00	SKP1_XENLA	No assigned EC number	0.5449	0.9166	0.9447	N/A	no
Q557E4	SKP1B_DICDI	No assigned EC number	0.5493	0.9107	0.9444	yes	no
Q9Y709	SKP1_SCHPO	No assigned EC number	0.4850	0.9345	0.9751	yes	no
Q5R512	SKP1_PONAB	No assigned EC number	0.5449	0.9166	0.9447	yes	no
B0Y3B5	SKP1_ASPFC	No assigned EC number	0.5121	0.9107	0.9683	N/A	no
B8NSJ0	SKP1_ASPFN	No assigned EC number	0.5088	0.9226	0.9627	N/A	no
Q39255	SKP1A_ARATH	No assigned EC number	0.7590	0.9464	0.9937	yes	no
A1CZG3	SKP1_NEOFI	No assigned EC number	0.5121	0.9107	0.9683	N/A	no
Q5ZKF5	SKP1_CHICK	No assigned EC number	0.5449	0.9166	0.9447	yes	no
C5FHU9	SKP1_ARTOC	No assigned EC number	0.5214	0.8988	0.9151	N/A	no
P52285	SKP1A_DICDI	No assigned EC number	0.5493	0.9107	0.9444	yes	no
Q4WTT8	SKP1_ASPFU	No assigned EC number	0.5121	0.9107	0.9683	yes	no
D4ARL8	SKP1_ARTBC	No assigned EC number	0.5272	0.9107	0.9329	N/A	no
Q5BAX8	SKP1_EMENI	No assigned EC number	0.5060	0.9107	0.9503	yes	no
P63209	SKP1_CAVPO	No assigned EC number	0.5449	0.9166	0.9447	yes	no
P63208	SKP1_HUMAN	No assigned EC number	0.5449	0.9166	0.9447	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_570017	SubName- Full=Putative uncharacterized protein; (158 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.01580010	SubName- Full=Putative uncharacterized protein; (110 aa)					•	•			0.810
	grail3.0037002301	hypothetical protein (110 aa)					•	•			0.810
	estExt_fgenesh4_pm.C_280017	hypothetical protein (117 aa)					•	•			0.810

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
pfam01466	78	pfam01466, Skp1, Skp1 family, dimerisation domain	8e-51
COG5201	158	COG5201, SKP1, SCF ubiquitin ligase, SKP1 componen	2e-46
smart00512	104	smart00512, Skp1, Found in Skp1 protein family	6e-42
pfam03931	61	pfam03931, Skp1_POZ, Skp1 family, tetramerisation	1e-29

>gnl|CDD|201810 pfam01466, Skp1, Skp1 family, dimerisation domain

 Score =  156 bits (398), Expect = 8e-51
 Identities = 64/78 (82%), Positives = 70/78 (89%)

Query: 91  LKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKND 150
           LK WD +FV VDQ TLFDLILAANYLNIKGLLDL CQ VADMIKGKTPEEIR+ F I+ND
Sbjct: 1   LKEWDAEFVDVDQDTLFDLILAANYLNIKGLLDLACQKVADMIKGKTPEEIREIFGIEND 60

Query: 151 FTPEEEEEVRRENQWAFE 168
           FTPEEEEE+R+EN+WAFE
Sbjct: 61  FTPEEEEEIRKENEWAFE 78

Length = 78

>gnl|CDD|227528 COG5201, SKP1, SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

 Score =  148 bits (375), Expect = 2e-46
 Identities = 77/162 (47%), Positives = 103/162 (63%), Gaps = 10/162 (6%)

Query: 6   MIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADN-GIPLPNVTGKILAKVVEYCKKHV 64
           MI L+S DGE F V+E +A  S  IK+M+ D  A N  IP PNV   +L KV E+ + H 
Sbjct: 3   MIELESIDGEIFRVDENIAERSILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHT 62

Query: 65  EVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDL 124
              +  +++     S         +    WD  F++VDQ  L ++ LAANYL IK LLDL
Sbjct: 63  SSLSEDENDLEIRKS---------KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDL 113

Query: 125 TCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWA 166
            C+ VA+MI+GK+PEEIR+TFNI+NDFTPEEE  +R+EN+WA
Sbjct: 114 GCKIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRKENEWA 155

Length = 158

>gnl|CDD|214704 smart00512, Skp1, Found in Skp1 protein family

 Score =  135 bits (342), Expect = 6e-42
 Identities = 60/119 (50%), Positives = 75/119 (63%), Gaps = 19/119 (15%)

Query: 4   PKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCAD----NGIPLPNVTGKILAKVVEY 59
            K I L S DGE FEVE  VA +S TIK MIED   D    N IPLPNVT KIL+KV+EY
Sbjct: 1   SKYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEY 60

Query: 60  CKKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNI 118
           C+ HV+ P +                  ++D+ +WD +F+K+DQ TLF+LILAANYL+I
Sbjct: 61  CEHHVDDPPSVAD---------------KDDIPTWDAEFLKIDQETLFELILAANYLDI 104

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues. Length = 104

>gnl|CDD|217800 pfam03931, Skp1_POZ, Skp1 family, tetramerisation domain

 Score =  102 bits (257), Expect = 1e-29
 Identities = 39/61 (63%), Positives = 44/61 (72%)

Query: 5  KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHV 64
          K+I L S DGE FEVE  VA +S TIK MIED   D+ IPLPNVT KILAKV+E+CK H 
Sbjct: 1  KLIKLTSSDGEIFEVEREVARQSKTIKAMIEDLGVDDPIPLPNVTSKILAKVIEWCKHHK 60

Query: 65 E 65
           
Sbjct: 61 V 61

Length = 61

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
KOG1724	162	consensus SCF ubiquitin ligase, Skp1 component [Po	100.0
COG5201	158	SKP1 SCF ubiquitin ligase, SKP1 component [Posttra	100.0
PF01466	78	Skp1: Skp1 family, dimerisation domain; InterPro:	99.97
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	99.96
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	99.82
KOG3473	112	consensus RNA polymerase II transcription elongati	99.72
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	98.68
PHA02713	557	hypothetical protein; Provisional	98.61
PHA03098	534	kelch-like protein; Provisional	98.48
PHA02790	480	Kelch-like protein; Provisional	98.39
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	98.35
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.12
KOG4682	488	consensus Uncharacterized conserved protein, conta	95.18
KOG4350	620	consensus Uncharacterized conserved protein, conta	94.9
KOG3433	203	consensus Protein involved in meiotic recombinatio	94.19
COG5124	209	Protein predicted to be involved in meiotic recomb	93.69
KOG2716	230	consensus Polymerase delta-interacting protein PDI	93.0
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	89.74
KOG0783	1267	consensus Uncharacterized conserved protein, conta	88.59
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	83.14

>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-48  Score=289.70  Aligned_cols=156  Identities=63%  Similarity=0.971  Sum_probs=139.5

Q ss_pred             CCeEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC-CCC--CcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 030962            4 PKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDC-ADN--GIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSN   80 (168)
Q Consensus         4 ~~~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~-~~~--~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~   80 (168)
                      .++|+|+|+||++|.|+.++|++|.+|++++.+.+ ...  +||||+|+|.+|++||+||+||+++++...+.+      
T Consensus         4 ~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~------   77 (162)
T KOG1724|consen    4 KKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDK------   77 (162)
T ss_pred             CCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccc------
Confidence            47999999999999999999999999999988765 334  899999999999999999999998865221100      


Q ss_pred             CCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHHHHH
Q 030962           81 GAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVR  160 (168)
Q Consensus        81 ~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~ee~~~i~  160 (168)
                         ..+....+++||++|++++..+||+|+.|||||+|++|+++||+.+|++++||||+|||..|||++|+|+||+++++
T Consensus        78 ---~~~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~  154 (162)
T KOG1724|consen   78 ---ELPEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIR  154 (162)
T ss_pred             ---cccccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHh
Confidence               01234459999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccccC
Q 030962          161 RENQWAFE  168 (168)
Q Consensus       161 ~e~~w~~~  168 (168)
                      +++.|+|+
T Consensus       155 ~e~~~~~~  162 (162)
T KOG1724|consen  155 KENEWAFE  162 (162)
T ss_pred             hccccccC
Confidence            99999986

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.9e-45  Score=257.27  Aligned_cols=154  Identities=49%  Similarity=0.791  Sum_probs=136.7

Q ss_pred             eEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC-CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCC
Q 030962            6 MIVLKSCDGESFEVEEAVALESTTIKHMIEDDC-ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAAT   84 (168)
Q Consensus         6 ~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~-~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~   84 (168)
                      .|.|.|.||++|.|+..+|..|-+|++++.+.+ .+-+||+|+|+|.+|.+|++||+||+.... +++       ++...
T Consensus         3 ~i~l~s~dge~F~vd~~iAerSiLikN~l~d~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~s-ede-------~d~~~   74 (158)
T COG5201           3 MIELESIDGEIFRVDENIAERSILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHTSSLS-EDE-------NDLEI   74 (158)
T ss_pred             ceEEEecCCcEEEehHHHHHHHHHHHHHhccccccCCCCcccchhHHHHHHHHHHHHhccccCC-Ccc-------ChHhh
Confidence            699999999999999999999999999988765 467899999999999999999999987543 222       11110


Q ss_pred             CCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHHHHHHhcc
Q 030962           85 NGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQ  164 (168)
Q Consensus        85 ~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~ee~~~i~~e~~  164 (168)
                       ......+.||+.|+.+|+++|++++.|||||+|++|+++||+.||.+|+||||+|||++|||++||||||+++|++|++
T Consensus        75 -rks~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeeir~tfni~ndfTpEEe~~irkEnE  153 (158)
T COG5201          75 -RKSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRKENE  153 (158)
T ss_pred             -hccCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHHHHHhcc
Confidence             1234567899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccC
Q 030962          165 WAFE  168 (168)
Q Consensus       165 w~~~  168 (168)
                      |+.+
T Consensus       154 Waed  157 (158)
T COG5201         154 WAED  157 (158)
T ss_pred             cccc
Confidence            9864

>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=99.97  E-value=9.9e-31  Score=173.86  Aligned_cols=78  Identities=68%  Similarity=1.193  Sum_probs=68.5

Q ss_pred             ccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHHHHHHhcccccC
Q 030962           91 LKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE  168 (168)
Q Consensus        91 ~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~ee~~~i~~e~~w~~~  168 (168)
                      +++||++|++++.+.|++|+.||+||+|++|+++||++||.+++|||++|||++|||++|+|+||++++++||+|+||
T Consensus         1 l~~wD~~F~~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~i~~e~~w~~~   78 (78)
T PF01466_consen    1 LPEWDQEFLDVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEEIRKENEWAFE   78 (78)
T ss_dssp             HHHHHHHHT-S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHHHHHHCCCTB-
T ss_pred             CCHHHHHHHHcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHHHHcchhcC
Confidence            468999999999999999999999999999999999999999999999999999999999999999999999999997

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....

>smart00512 Skp1 Found in Skp1 protein family

Probab=99.96  E-value=1.6e-28  Score=171.59  Aligned_cols=99  Identities=61%  Similarity=0.957  Sum_probs=87.7

Q ss_pred             CeEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCCC----CCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 030962            5 KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCAD----NGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSN   80 (168)
Q Consensus         5 ~~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~~~----~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~   80 (168)
                      ++++|+|+||++|.|++++|++|++|++++++.+..    .+||+|+|+|.+|++|++||+||+.++.+...        
T Consensus         2 ~~v~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~--------   73 (104)
T smart00512        2 KYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVAD--------   73 (104)
T ss_pred             CeEEEEeCCCCEEEecHHHHHHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccc--------
Confidence            589999999999999999999999999999976532    48999999999999999999999987652211        


Q ss_pred             CCCCCCCcccccccchhccccchHHHHHHHhhhcccCc
Q 030962           81 GAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNI  118 (168)
Q Consensus        81 ~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I  118 (168)
                             ...+++||.+|++++.+.|++|+.||+||+|
T Consensus        74 -------~~~~~~wD~~F~~~d~~~l~dLl~AAnyL~I  104 (104)
T smart00512       74 -------KDDIPTWDAEFLKIDQETLFELILAANYLDI  104 (104)
T ss_pred             -------cccccHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence                   1457999999999999999999999999997

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=99.82  E-value=1.5e-20  Score=119.60  Aligned_cols=60  Identities=47%  Similarity=0.777  Sum_probs=54.6

Q ss_pred             eEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCCCC-CcccCCCCHHHHHHHHHHHHhccC
Q 030962            6 MIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADN-GIPLPNVTGKILAKVVEYCKKHVE   65 (168)
Q Consensus         6 ~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~~~~-~Ipl~~i~s~~L~~Ii~wc~~h~~   65 (168)
                      +++|+|+||+.|.|++++|++|++|++|+++.+... +||||+|+|++|++|++||+||++
T Consensus         2 ~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~~H~~   62 (62)
T PF03931_consen    2 YVKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCEHHKN   62 (62)
T ss_dssp             EEEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhcccccccccCccCHHHHHHHHHHHHhcCC
Confidence            689999999999999999999999999999877544 599999999999999999999973

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]

Probab=99.72  E-value=2e-17  Score=111.72  Aligned_cols=92  Identities=25%  Similarity=0.429  Sum_probs=78.7

Q ss_pred             CCeEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC-----CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 030962            4 PKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDC-----ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGAN   78 (168)
Q Consensus         4 ~~~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~-----~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~   78 (168)
                      +.+++|+|+||++|.|.+.+|..|+|||.|+.+.+     ..+.+.+++|+|.+|++|++|+.+...+..          
T Consensus        16 ~~yVkLvS~Ddhefiikre~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~----------   85 (112)
T KOG3473|consen   16 SMYVKLVSSDDHEFIIKREHAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTN----------   85 (112)
T ss_pred             hhheEeecCCCcEEEEeehhhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeecc----------
Confidence            47999999999999999999999999999998654     256789999999999999999998766544          


Q ss_pred             CCCCCCCCCcccccccchhccccchHHHHHHHhhhcccCc
Q 030962           79 SNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNI  118 (168)
Q Consensus        79 ~~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I  118 (168)
                              ....+|+|     .+.++..++|+.||+||++
T Consensus        86 --------~s~eiPeF-----~IppemaleLL~aAn~Lec  112 (112)
T KOG3473|consen   86 --------SSTEIPEF-----DIPPEMALELLMAANYLEC  112 (112)
T ss_pred             --------ccccCCCC-----CCCHHHHHHHHHHhhhhcC
Confidence                    11345665     6899999999999999974

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=98.68  E-value=2.5e-07  Score=63.95  Aligned_cols=93  Identities=18%  Similarity=0.332  Sum_probs=74.4

Q ss_pred             CeEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC-CC---CCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 030962            5 KMIVLKSCDGESFEVEEAVA-LESTTIKHMIEDDC-AD---NGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANS   79 (168)
Q Consensus         5 ~~i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~-~~---~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~   79 (168)
                      .-++|+..||+.|.|++.++ ..|+++++++...+ ..   ..|++++++...++.+++||+...               
T Consensus        11 ~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~---------------   75 (111)
T PF00651_consen   11 SDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGE---------------   75 (111)
T ss_dssp             --EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSE---------------
T ss_pred             CCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCc---------------
Confidence            35788889999999999985 68999999999762 22   247889999999999999996321               


Q ss_pred             CCCCCCCCcccccccchhcccc-chHHHHHHHhhhcccCchhHHHHHHHHHHH
Q 030962           80 NGAATNGGEEDLKSWDTDFVKV-DQATLFDLILAANYLNIKGLLDLTCQTVAD  131 (168)
Q Consensus        80 ~~~~~~~~~~~~~~wd~eFl~~-~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~  131 (168)
                                         +.+ +.+.+.+++.+|++|+++.|.+.|+..+..
T Consensus        76 -------------------~~~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~  109 (111)
T PF00651_consen   76 -------------------IEINSDENVEELLELADKLQIPELKKACEKFLQE  109 (111)
T ss_dssp             -------------------EEEE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             -------------------ccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence                               012 266789999999999999999999998864

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>PHA02713 hypothetical protein; Provisional

Probab=98.61  E-value=2.6e-07  Score=81.64  Aligned_cols=101  Identities=15%  Similarity=0.231  Sum_probs=81.8

Q ss_pred             eEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC----CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 030962            6 MIVLKSCDGESFEVEEAVA-LESTTIKHMIEDDC----ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSN   80 (168)
Q Consensus         6 ~i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~----~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~   80 (168)
                      -++|...+|+.|.+++.++ ..|.+++.|+...-    ....|.|.+++..+|+.|++|++...                
T Consensus        27 DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~----------------   90 (557)
T PHA02713         27 DVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH----------------   90 (557)
T ss_pred             CEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC----------------
Confidence            3677777799999999985 58999999997532    13468899999999999999998521                


Q ss_pred             CCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHH
Q 030962           81 GAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIR  142 (168)
Q Consensus        81 ~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir  142 (168)
                                          ++.+++.+|+.||++|+|+.|.+.||.++...+.-.+-=+|.
T Consensus        91 --------------------i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~  132 (557)
T PHA02713         91 --------------------ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMY  132 (557)
T ss_pred             --------------------CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHH
Confidence                                245679999999999999999999999998877655544443

>PHA03098 kelch-like protein; Provisional

Probab=98.48  E-value=1.1e-06  Score=76.89  Aligned_cols=96  Identities=20%  Similarity=0.295  Sum_probs=77.4

Q ss_pred             EEEE-cCCCCeEEecHHHH-HHhHHHHHHHHhCCCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCC
Q 030962            7 IVLK-SCDGESFEVEEAVA-LESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAAT   84 (168)
Q Consensus         7 i~l~-S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~   84 (168)
                      ++|. +.+|+.|.+++.++ ..|.+++.|+.+......|.|+. +..+|+.|++|++..+                    
T Consensus        12 v~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~~~~i~l~~-~~~~~~~~l~y~Ytg~--------------------   70 (534)
T PHA03098         12 ESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKENEINLNI-DYDSFNEVIKYIYTGK--------------------   70 (534)
T ss_pred             EEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCCCceEEecC-CHHHHHHHHHHhcCCc--------------------
Confidence            3444 46899999999985 57999999998643356788888 9999999999998532                    


Q ss_pred             CCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCC
Q 030962           85 NGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKT  137 (168)
Q Consensus        85 ~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks  137 (168)
                                    +.++.+++.+|+.||++|+++.|.+.|+.++...+.-.+
T Consensus        71 --------------~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~n  109 (534)
T PHA03098         71 --------------INITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNN  109 (534)
T ss_pred             --------------eEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhH
Confidence                          235677799999999999999999999999887765444

>PHA02790 Kelch-like protein; Provisional

Probab=98.39  E-value=7.1e-07  Score=77.46  Aligned_cols=93  Identities=11%  Similarity=0.141  Sum_probs=71.9

Q ss_pred             EEcCCCCeEEecHHH-HHHhHHHHHHHHhCCC--CCCccc--CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCC
Q 030962            9 LKSCDGESFEVEEAV-ALESTTIKHMIEDDCA--DNGIPL--PNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAA   83 (168)
Q Consensus         9 l~S~DG~~~~v~~~~-a~~S~~l~~~l~~~~~--~~~Ipl--~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~   83 (168)
                      +..--|+.|.+++.+ |..|++++.|+...-.  ...+.+  .+++..+|+.|++|++.-+                   
T Consensus        25 ~~~~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~-------------------   85 (480)
T PHA02790         25 IIEAIGGNIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGK-------------------   85 (480)
T ss_pred             EEEEcCcEEeeehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeee-------------------
Confidence            334568899999998 6789999999975321  223433  3899999999999996321                   


Q ss_pred             CCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcC
Q 030962           84 TNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKG  135 (168)
Q Consensus        84 ~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~  135 (168)
                                     +.++.+++.+|+.||++|+|+.+++.||.++...+.-
T Consensus        86 ---------------l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~  122 (480)
T PHA02790         86 ---------------VYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRK  122 (480)
T ss_pred             ---------------EEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence                           3467778999999999999999999999997665543

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=98.35  E-value=1e-06  Score=57.53  Aligned_cols=82  Identities=23%  Similarity=0.347  Sum_probs=66.1

Q ss_pred             cCCCCeEEecHHHHH-HhHHHHHHHHhCC---CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCC
Q 030962           11 SCDGESFEVEEAVAL-ESTTIKHMIEDDC---ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATNG   86 (168)
Q Consensus        11 S~DG~~~~v~~~~a~-~S~~l~~~l~~~~---~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~~~   86 (168)
                      ..+|+.|.+++.++. .|.+++.++....   ....+++++++..+++.+++|++...   .                  
T Consensus         5 ~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~---~------------------   63 (90)
T smart00225        5 VVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGK---L------------------   63 (90)
T ss_pred             EECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCce---e------------------
Confidence            457799999998864 6899999998643   35578899999999999999998532   1                  


Q ss_pred             CcccccccchhccccchHHHHHHHhhhcccCchhHHHHHH
Q 030962           87 GEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTC  126 (168)
Q Consensus        87 ~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~  126 (168)
                                   .++...+.+++.+|.+++++.|.+.|+
T Consensus        64 -------------~~~~~~~~~l~~~a~~~~~~~l~~~c~   90 (90)
T smart00225       64 -------------DLPEENVEELLELADYLQIPGLVELCE   90 (90)
T ss_pred             -------------ecCHHHHHHHHHHHHHHCcHHHHhhhC
Confidence                         123347899999999999999998874

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.12  E-value=7.6e-06  Score=72.60  Aligned_cols=89  Identities=19%  Similarity=0.323  Sum_probs=74.6

Q ss_pred             cCCCCeEEecHHH-HHHhHHHHHHHHhCC---CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCC
Q 030962           11 SCDGESFEVEEAV-ALESTTIKHMIEDDC---ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATNG   86 (168)
Q Consensus        11 S~DG~~~~v~~~~-a~~S~~l~~~l~~~~---~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~~~   86 (168)
                      .-+|+.|..++.+ |..|.+++.|+...-   ....|.+.+++..+|+.+++|++...                      
T Consensus        42 ~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~----------------------   99 (571)
T KOG4441|consen   42 LVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGK----------------------   99 (571)
T ss_pred             EECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcce----------------------
Confidence            3455999999998 568999999998532   35678899999999999999998543                      


Q ss_pred             CcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHh
Q 030962           87 GEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMI  133 (168)
Q Consensus        87 ~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i  133 (168)
                                  +.++.+++-+|+.||++|+|+.++++||.++...+
T Consensus       100 ------------i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l  134 (571)
T KOG4441|consen  100 ------------LEISEDNVQELLEAASLLQIPEVVDACCEFLESQL  134 (571)
T ss_pred             ------------EEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence                        24688899999999999999999999999986543

>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=95.18  E-value=0.036  Score=47.13  Aligned_cols=104  Identities=16%  Similarity=0.248  Sum_probs=78.4

Q ss_pred             cCCCCeEEecHHHHHHhHHHHHHHHhCCC-------CCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCC
Q 030962           11 SCDGESFEVEEAVALESTTIKHMIEDDCA-------DNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAA   83 (168)
Q Consensus        11 S~DG~~~~v~~~~a~~S~~l~~~l~~~~~-------~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~   83 (168)
                      ..=|.++.+++--+.||+++..|+.+.-.       .-.||=|+|+...|..++-=+++-   .                
T Consensus        75 ~alg~eWrlHk~yL~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~d---E----------------  135 (488)
T KOG4682|consen   75 EALGFEWRLHKPYLFQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRD---E----------------  135 (488)
T ss_pred             hhccceeeeeeeeeeccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhh---h----------------
Confidence            34588899999889999999999886421       123555789999999988766541   1                


Q ss_pred             CCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCC
Q 030962           84 TNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDF  151 (168)
Q Consensus        84 ~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~  151 (168)
                                     +.++.+.+..++.||.+|...+|++-|...+...++-+|   +.+++....-+
T Consensus       136 ---------------veI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkt---a~~yYea~ckY  185 (488)
T KOG4682|consen  136 ---------------VEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKT---ACGYYEAACKY  185 (488)
T ss_pred             ---------------eeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhh---hhHhhhhhhhh
Confidence                           257889999999999999999999999998877665555   45555544333

>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=94.90  E-value=0.25  Score=42.37  Aligned_cols=128  Identities=10%  Similarity=0.154  Sum_probs=83.1

Q ss_pred             eEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCC---CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCC
Q 030962            6 MIVLKSCDGESFEVEEAV-ALESTTIKHMIEDDC---ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNG   81 (168)
Q Consensus         6 ~i~l~S~DG~~~~v~~~~-a~~S~~l~~~l~~~~---~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~   81 (168)
                      -++|+-.| +.|..++-+ |..|.++|.||=+.-   ....|||..-++..++.+++|++.-+-+-...++ +..-....
T Consensus        46 DVtfvve~-~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~e-d~lld~Ls  123 (620)
T KOG4350|consen   46 DVTFVVED-TRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEE-DILLDYLS  123 (620)
T ss_pred             ceEEEEec-cccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchH-HHHHHHHH
Confidence            35666656 888888876 568999999986542   2567999888899999999999876644321111 00000000


Q ss_pred             CCCCCCcccccccc---hhccc--cchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHHh
Q 030962           82 AATNGGEEDLKSWD---TDFVK--VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRK  143 (168)
Q Consensus        82 ~~~~~~~~~~~~wd---~eFl~--~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir~  143 (168)
                      .   ...-.+++.+   .+++.  +..+++|-+++||.+.+.+.|.++||.++     ++.+.|+-.
T Consensus       124 l---Ah~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfm-----DrnA~~lL~  182 (620)
T KOG4350|consen  124 L---AHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFM-----DRNADQLLE  182 (620)
T ss_pred             H---HHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHH-----hcCHHhhhc
Confidence            0   0011111111   13333  56788899999999999999999999876     666776644

>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.19  E-value=0.059  Score=40.99  Aligned_cols=39  Identities=41%  Similarity=0.569  Sum_probs=31.3

Q ss_pred             HHhhhccc--CchhHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCC
Q 030962          109 LILAANYL--NIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT  152 (168)
Q Consensus       109 Ll~AA~~L--~I~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t  152 (168)
                      ...|||.-  +|--|.++||+..     |.-+.+||+.||||+||.
T Consensus       160 ~~eaanrwtDnI~il~dy~~rkf-----~~e~nqi~~~fgIPed~d  200 (203)
T KOG3433|consen  160 MAEAANRWTDNIFILIDYLYRKF-----GLEPNQIRKEFGIPEDFD  200 (203)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhc-----CCCHHHHhHhcCCCcccc
Confidence            34455543  7888899998876     899999999999999973

>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]

Probab=93.69  E-value=0.061  Score=40.73  Aligned_cols=31  Identities=42%  Similarity=0.686  Sum_probs=26.1

Q ss_pred             CchhHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCC
Q 030962          117 NIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT  152 (168)
Q Consensus       117 ~I~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t  152 (168)
                      +|.-|.++.|+..     +..++|||+.||||.||.
T Consensus       174 nI~ilidy~c~kf-----~~~~~qir~~fgIPedld  204 (209)
T COG5124         174 NIEILIDYLCKKF-----FLKPEQIRKEFGIPEDLD  204 (209)
T ss_pred             hHHHHHHHHHHHc-----CCCHHHHHHhcCCCcchh
Confidence            6777888777765     789999999999999873

>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]

Probab=93.00  E-value=1.5  Score=34.71  Aligned_cols=102  Identities=20%  Similarity=0.339  Sum_probs=74.5

Q ss_pred             CCCCCeEEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCC-----CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCC
Q 030962            1 MSSPKMIVLKSCDGESFEVEEAV-ALESTTIKHMIEDDC-----ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNT   74 (168)
Q Consensus         1 m~~~~~i~l~S~DG~~~~v~~~~-a~~S~~l~~~l~~~~-----~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~   74 (168)
                      |.+++.++|- --|..|.-++.- .++.+.++.|++..-     ..+.|=+ +=+..=+..|+.||+--...        
T Consensus         1 ~~~~~~vkLn-vGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~--------   70 (230)
T KOG2716|consen    1 LSMSETVKLN-VGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVD--------   70 (230)
T ss_pred             CCccceEEEe-cCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhccccc--------
Confidence            3455667753 347788887765 568999999998642     1223433 66788899999999832111        


Q ss_pred             CCCCCCCCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCC
Q 030962           75 SGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGK  136 (168)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~k  136 (168)
                                      +|+        +...+-+|+.-|.|..+.+|+++|...++..+++.
T Consensus        71 ----------------LPe--------~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~~~~~  108 (230)
T KOG2716|consen   71 ----------------LPE--------SEKELKELLREAEFYLLDGLVELCQSAIARLIRGY  108 (230)
T ss_pred             ----------------Ccc--------chHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccCc
Confidence                            111        46778999999999999999999999999987774

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=89.74  E-value=0.64  Score=38.49  Aligned_cols=86  Identities=14%  Similarity=0.264  Sum_probs=59.0

Q ss_pred             CCeEEecHHHH-HHhHHHHHHHHh---C-CCCCCcccCCC--CHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCC
Q 030962           14 GESFEVEEAVA-LESTTIKHMIED---D-CADNGIPLPNV--TGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATNG   86 (168)
Q Consensus        14 G~~~~v~~~~a-~~S~~l~~~l~~---~-~~~~~Ipl~~i--~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~~~   86 (168)
                      .+.|..+++.+ ...+++++.+..   . ...++|+| .|  +-.|++=+++|++.    ..            |     
T Consensus        13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idi-sVhCDv~iF~WLm~yv~~----~~------------p-----   70 (317)
T PF11822_consen   13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDI-SVHCDVHIFEWLMRYVKG----EP------------P-----   70 (317)
T ss_pred             ceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcce-EEecChhHHHHHHHHhhc----CC------------C-----
Confidence            45789999885 679999999853   2 22345555 33  33445555555554    21            0     


Q ss_pred             CcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhc
Q 030962           87 GEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIK  134 (168)
Q Consensus        87 ~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~  134 (168)
                                   .++++++..++--|+||+|++|++.|-.++...+.
T Consensus        71 -------------~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~  105 (317)
T PF11822_consen   71 -------------SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMS  105 (317)
T ss_pred             -------------cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHH
Confidence                         24667788899999999999999999888755543

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=88.59  E-value=1.4  Score=41.23  Aligned_cols=105  Identities=17%  Similarity=0.205  Sum_probs=71.4

Q ss_pred             EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC-C--CCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 030962            7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDC-A--DNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGA   82 (168)
Q Consensus         7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~-~--~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~   82 (168)
                      ..++.+||+++..++.++ ..+.++..|+...- .  .-.+.+-.++++.|+.|++|++--  +..              
T Consensus       713 ~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~--d~~--------------  776 (1267)
T KOG0783|consen  713 TVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSD--DKV--------------  776 (1267)
T ss_pred             EEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHcc--chH--------------
Confidence            456677999999999874 45888888876432 1  111222235699999999998731  111              


Q ss_pred             CCCCCcccccccchhccc--cchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHH
Q 030962           83 ATNGGEEDLKSWDTDFVK--VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEI  141 (168)
Q Consensus        83 ~~~~~~~~~~~wd~eFl~--~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eei  141 (168)
                                    +|++  .+.+-+|+++-.|+-|=|..|.+.|-+.+-+++.=|+.-++
T Consensus       777 --------------~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~l  823 (1267)
T KOG0783|consen  777 --------------ELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTL  823 (1267)
T ss_pred             --------------HHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHH
Confidence                          1122  23455888999999999999999888888887776665443

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=83.14  E-value=1.3  Score=33.96  Aligned_cols=43  Identities=35%  Similarity=0.337  Sum_probs=31.6

Q ss_pred             HHHHHHhhhccc--CchhHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCC
Q 030962          105 TLFDLILAANYL--NIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT  152 (168)
Q Consensus       105 ~l~~Ll~AA~~L--~I~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t  152 (168)
                      .+..+..||+..  ||..|..+|+..     -|.+.++|++.||||+||.
T Consensus       143 ~~~~~~~~anrwTDNI~~l~~~~~~k-----~~~~~~~i~k~f~Ip~d~d  187 (188)
T PF03962_consen  143 EIKIAKEAANRWTDNIFSLKSYLKKK-----FGMDEEDIRKEFGIPEDFD  187 (188)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHh-----cCCCHHHHHHHcCCccccC
Confidence            334445566654  666777777664     3899999999999999973

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
2p1m_A	160	Tir1-ask1 Complex Structure Length = 160		8e-63
1fqv_B	149	Insights Into Scf Ubiquitin Ligases From The Struct		6e-39
3l2o_A	149	Structure-Based Mechanism Of Dimerization-Dependent		6e-39
1p22_B	145	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		9e-39
2e31_B	166	Structural Basis For Selection Of Glycosylated Subs		3e-38
2ast_A	159	Crystal Structure Of The Skp1-Skp2-Cks1 Complex Len		4e-38
1fs1_B	141	Insights Into Scf Ubiquitin Ligases From The Struct		1e-36
1ldk_D	133	Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu		5e-33
3mks_A	169	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-29
1nex_A	169	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		9e-28

>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure Length = 160

Iteration: 1
 Score =  235 bits (600), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 115/166 (69%), Positives = 127/166 (76%), Gaps = 7/166 (4%)
Query: 3   SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKK 62
           S K IVLKS DGESFEVEEAVALES TI HM+EDDC DNG+PLPNVT KILAKV+EYCK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61
Query: 63  HVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLL 122
           HVE   ++                 ++DLK+WD DF+K+DQATLF+LILAANYLNIK LL
Sbjct: 62  HVEAAASK-------AEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLL 114
Query: 123 DLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 168
           DLTCQTVADMIKGKTPEEIR TFNIKNDFTP         NQWAFE
Sbjct: 115 DLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 149

Iteration: 1
 Score =  156 bits (394), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 85/162 (52%), Positives = 104/162 (64%), Gaps = 17/162 (10%)
Query: 7   IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEV 66
           I L+S DGE FEV+  +A +S TIK M+ED   D  +PLPNV   IL KV+++C  H + 
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWCTHHKDD 62
Query: 67  PTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTC 126
           P                     +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC
Sbjct: 63  PGGSGT----------------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 106
Query: 127 QTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 168
           +TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct: 107 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 148

>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent Ubiquitination By The Scffbx4 Ubiquitin Ligase Length = 149

Iteration: 1
 Score =  156 bits (394), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 85/162 (52%), Positives = 104/162 (64%), Gaps = 17/162 (10%)
Query: 7   IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEV 66
           I L+S DGE FEV+  +A +S TIK M+ED   D  +PLPNV   IL KV+++C  H + 
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWCTHHKDD 62
Query: 67  PTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTC 126
           P                     +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC
Sbjct: 63  PGGSGT----------------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 106
Query: 127 QTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 168
           +TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct: 107 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 148

>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 145

Iteration: 1
 Score =  155 bits (392), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 85/162 (52%), Positives = 104/162 (64%), Gaps = 21/162 (12%)
Query: 7   IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEV 66
           I L+S DGE FEV+  +A +S TIK M+ED   D  +PLPNV   IL KV+++C  H + 
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWCTHHKDD 62
Query: 67  PTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTC 126
           P                     +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC
Sbjct: 63  PP--------------------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 102
Query: 127 QTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 168
           +TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct: 103 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 144

>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate By Scffbs1 Ubiquitin Ligase Length = 166

Iteration: 1
 Score =  154 bits (388), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 106/173 (61%), Gaps = 15/173 (8%)
Query: 3   SPKM--IVLKSCDGESFEVEEAVALESTTIKHMIED-----DCADNGIPLPNVTGKILAK 55
            P M  I L+S DGE FEV+  +A +S TIK M+ED     +  D+ +PLPNV   IL K
Sbjct: 1   GPHMPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKK 60
Query: 56  VVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANY 115
           V+++C  H                         +D+  WD +F+KVDQ TLF+LILAANY
Sbjct: 61  VIQWCTHH--------KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANY 112
Query: 116 LNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 168
           L+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT          NQW  E
Sbjct: 113 LDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 165

>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 141

Iteration: 1
 Score =  148 bits (374), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/146 (54%), Positives = 98/146 (67%), Gaps = 9/146 (6%)
Query: 7   IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEV 66
           I L+S DGE FEV+  +A +S TIK M+ED   D  +PLPNV   IL KV+++C  H   
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWCTHH--- 59
Query: 67  PTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTC 126
                                 +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC
Sbjct: 60  -----KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 114
Query: 127 QTVADMIKGKTPEEIRKTFNIKNDFT 152
           +TVA+MIKGKTPEEIRKTFNIKNDFT
Sbjct: 115 KTVANMIKGKTPEEIRKTFNIKNDFT 140

>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 133

Iteration: 1
 Score =  136 bits (343), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 74/140 (52%), Positives = 92/140 (65%), Gaps = 9/140 (6%)
Query: 7   IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEV 66
           I L+S DGE FEV+  +A +S TIK M+ED   D  +PLPNV   IL KV+++C  H   
Sbjct: 3   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWCTHH--- 58
Query: 67  PTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTC 126
                                 +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC
Sbjct: 59  -----KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 113
Query: 127 QTVADMIKGKTPEEIRKTFN 146
           +TVA+MIKGKTPEEIRKTFN
Sbjct: 114 KTVANMIKGKTPEEIRKTFN 133

>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 169

Iteration: 1
 Score =  124 bits (311), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 97/169 (57%), Gaps = 20/169 (11%)
Query: 7   IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNG-------IPLPNVTGKILAKVVEY 59
           +VL S +GE F V++ +A  S  +K+ + D   D+        +P+PNV   +L KV+E+
Sbjct: 9   VVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEW 68
Query: 60  CKKHVE--VPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLN 117
            + H +   P   D                   + SWD +F+KVDQ  L+++ILAANYLN
Sbjct: 69  AEHHRDSNFPDEDDDDSRKSAP-----------VDSWDREFLKVDQEMLYEIILAANYLN 117
Query: 118 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 166
           IK LLD  C+ VA+MI+G++PEEIR+TFNI NDFTP         N+WA
Sbjct: 118 IKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 166

>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 169

Iteration: 1
 Score =  119 bits (298), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 95/169 (56%), Gaps = 20/169 (11%)
Query: 7   IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGI-------PLPNVTGKILAKVVEY 59
           +VL S +GE F V++ +A  S  +K+ + D   D+         P+PNV   +L KV+E+
Sbjct: 9   VVLVSGEGERFTVDKKIAERSLLLKNYLNDXGDDDDEDDDEIVXPVPNVRSSVLQKVIEW 68
Query: 60  CKKHVE--VPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLN 117
            + H +   P   D                   + SWD +F+KVDQ  L+++ILAANYLN
Sbjct: 69  AEHHRDSNFPDEDDDDSRKSAP-----------VDSWDREFLKVDQEXLYEIILAANYLN 117
Query: 118 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWA 166
           IK LLD  C+ VA+ I+G++PEEIR+TFNI NDFTP         N+WA
Sbjct: 118 IKPLLDAGCKVVAEXIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	4e-62
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	2e-58
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	3e-55
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	4e-54
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	3e-35
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	4e-27
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	1e-26

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Length = 160

 Score =  188 bits (477), Expect = 4e-62
 Identities = 127/168 (75%), Positives = 142/168 (84%), Gaps = 8/168 (4%)

Query: 1   MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYC 60
           MS+ K IVLKS DGESFEVEEAVALES TI HM+EDDC DNG+PLPNVT KILAKV+EYC
Sbjct: 1   MSA-KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYC 59

Query: 61  KKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKG 120
           K+HVE   ++     GA ++       ++DLK+WD DF+K+DQATLF+LILAANYLNIK 
Sbjct: 60  KRHVEAAASKAEAVEGAATS-------DDDLKAWDADFMKIDQATLFELILAANYLNIKN 112

Query: 121 LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           LLDLTCQTVADMIKGKTPEEIR TFNIKNDFTPEEEEEVRRENQWAFE
Sbjct: 113 LLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Length = 169

 Score =  178 bits (453), Expect = 2e-58
 Identities = 72/175 (41%), Positives = 109/175 (62%), Gaps = 17/175 (9%)

Query: 1   MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMI-------EDDCADNGIPLPNVTGKIL 53
           M +   +VL S +GE F V++ +A  S  +K+ +       ++D  +  +P+PNV   +L
Sbjct: 4   MVT-SNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVL 62

Query: 54  AKVVEYCKKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAA 113
            KV+E+ + H +     + +           +     + SWD +F+KVDQ  L+++ILAA
Sbjct: 63  QKVIEWAEHHRDSNFPDEDDDD---------SRKSAPVDSWDREFLKVDQEMLYEIILAA 113

Query: 114 NYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 168
           NYLNIK LLD  C+ VA+MI+G++PEEIR+TFNI NDFTPEEE  +RREN+WA +
Sbjct: 114 NYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWAED 168

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Length = 141

 Score =  167 bits (423), Expect = 4e-54
 Identities = 81/147 (55%), Positives = 103/147 (70%), Gaps = 9/147 (6%)

Query: 6   MIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVE 65
            I L+S DGE FEV+  +A +S TIK M+ED   D  +PLPNV   IL KV+++C  H +
Sbjct: 3   SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP-VPLPNVNAAILKKVIQWCTHHKD 61

Query: 66  VPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLT 125
            P   + + +             +D+  WD +F+KVDQ TLF+LILAANYL+IKGLLD+T
Sbjct: 62  DPPPPEDDENKEKRT--------DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVT 113

Query: 126 CQTVADMIKGKTPEEIRKTFNIKNDFT 152
           C+TVA+MIKGKTPEEIRKTFNIKNDFT
Sbjct: 114 CKTVANMIKGKTPEEIRKTFNIKNDFT 140

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Length = 99

 Score =  117 bits (296), Expect = 3e-35
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 23/120 (19%)

Query: 1   MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDC--ADNGIPLPNVTGKILAKVVE 58
           MS    + L S D + +E+  + A+ S T+K MIE     +   I L      IL K VE
Sbjct: 1   MSQ-DFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVE 59

Query: 59  YCKKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNI 118
           Y   +++     +                ++++  ++     +      +L+LAA+YL+I
Sbjct: 60  YLNYNLKYSGVSED---------------DDEIPEFE-----IPTEMSLELLLAADYLSI 99

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Length = 112

 Score = 97.5 bits (243), Expect = 4e-27
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 28/118 (23%)

Query: 5   KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDC-----ADNGIPLPNVTGKILAKVVEY 59
             + L S DG  F V+   AL S TIK M+           N +    +   +L+KV  Y
Sbjct: 17  MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMY 76

Query: 60  CKKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLN 117
               V    +                    ++  +      +      +L++AAN+L+
Sbjct: 77  FTYKVRYTNSS------------------TEIPEFP-----IAPEIALELLMAANFLD 111

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Length = 96

 Score = 96.0 bits (239), Expect = 1e-26
 Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 28/116 (24%)

Query: 7   IVLKSCDGESFEVEEAVALESTTIKHMIEDDCAD-----NGIPLPNVTGKILAKVVEYCK 61
           + L S DG  F V+   AL S TIK M+           N +    +   +L+KV  Y  
Sbjct: 3   VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 62

Query: 62  KHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLN 117
             V                         +  +   +F  +      +L++AAN+L+
Sbjct: 63  YKVR----------------------YTNSSTEIPEF-PIAPEIALELLMAANFLD 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	100.0
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	100.0
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	100.0
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	100.0
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	99.95
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	99.94
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	99.93
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.91
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.04
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	98.96
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	98.91
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	98.85
2vpk_A	116	Myoneurin; transcription regulation, transcription	98.84
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	98.84
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	98.83
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	98.83
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	98.8
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	98.77
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	98.75
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	98.73
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	98.67
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	98.59
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	98.59
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	98.58
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	98.5
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	98.47
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	98.41
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	98.4
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	90.9

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=100.00  E-value=5.9e-55  Score=328.46  Aligned_cols=158  Identities=46%  Similarity=0.796  Sum_probs=133.6

Q ss_pred             CCCCCeEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCC-----C--CCcccCCCCHHHHHHHHHHHHhccCCCCCCCCC
Q 030962            1 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCA-----D--NGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSN   73 (168)
Q Consensus         1 m~~~~~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~~-----~--~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~   73 (168)
                      ||+ ++|+|+|+||+.|.|++.+|++|++|++|+++.+.     .  .+||||+|++.+|++||+||+||+.++++... 
T Consensus         4 m~~-~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~-   81 (169)
T 3v7d_A            4 MVT-SNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDED-   81 (169)
T ss_dssp             --C-CEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC---
T ss_pred             CCC-CeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccc-
Confidence            666 89999999999999999999999999999997653     3  68999999999999999999999998753211 


Q ss_pred             CCCCCCCCCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCH
Q 030962           74 TSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP  153 (168)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~  153 (168)
                      .        ........+++||++|+++++..||+|+.|||||+|++|+++||++||++|+||||+|||++|||++||||
T Consensus        82 ~--------~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~  153 (169)
T 3v7d_A           82 D--------DDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTP  153 (169)
T ss_dssp             --------------CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCH
T ss_pred             c--------ccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCH
Confidence            0        01134567899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccC
Q 030962          154 EEEEEVRRENQWAFE  168 (168)
Q Consensus       154 ee~~~i~~e~~w~~~  168 (168)
                      ||++++|+||+|+||
T Consensus       154 eEe~~ir~en~W~~~  168 (169)
T 3v7d_A          154 EEEAAIRRENEWAED  168 (169)
T ss_dssp             HHHHHHHTTC-----
T ss_pred             HHHHHHHHhcccccc
Confidence            999999999999997

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=100.00  E-value=3.1e-53  Score=316.64  Aligned_cols=160  Identities=78%  Similarity=1.199  Sum_probs=89.3

Q ss_pred             CCCCCeEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 030962            1 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSN   80 (168)
Q Consensus         1 m~~~~~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~   80 (168)
                      |++ ++|+|+|+||+.|.|++.+|.+|++|++|+++.+...+||||+|++.+|++||+||+||+.++++... .     .
T Consensus         1 ~~~-~~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~-~-----~   73 (160)
T 2p1m_A            1 MSA-KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAE-A-----V   73 (160)
T ss_dssp             --------CCC---------CHHHHTCTTTC------------CCTTSCHHHHHHHHHC---------------------
T ss_pred             CCC-CEEEEEcCCCCEEEECHHHHHHhHHHHHHHHccCCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccc-c-----c
Confidence            444 79999999999999999999999999999998766779999999999999999999999988652221 0     1


Q ss_pred             CCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHHHHH
Q 030962           81 GAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVR  160 (168)
Q Consensus        81 ~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~ee~~~i~  160 (168)
                      |. .......+++||++|++++.+.||+|+.||+||+|++|+++||++||++|+|||++|||++|||++||||||+++||
T Consensus        74 ~~-~~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~eEe~~ir  152 (160)
T 2p1m_A           74 EG-AATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVR  152 (160)
T ss_dssp             ----------------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHHHHHHHH
T ss_pred             cc-cccccchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHH
Confidence            11 01355678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcccccC
Q 030962          161 RENQWAFE  168 (168)
Q Consensus       161 ~e~~w~~~  168 (168)
                      +||+|+||
T Consensus       153 ~en~w~~~  160 (160)
T 2p1m_A          153 RENQWAFE  160 (160)
T ss_dssp             HHHHHHHC
T ss_pred             HhCccccC
Confidence            99999997

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=100.00  E-value=6.2e-46  Score=271.85  Aligned_cols=139  Identities=58%  Similarity=0.924  Sum_probs=111.9

Q ss_pred             eEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCC
Q 030962            6 MIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATN   85 (168)
Q Consensus         6 ~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~~   85 (168)
                      .|+|+|+||+.|.|++.+|.+|++|++|+++.+ ..+||||+|++.+|++|++||+||++++++... +      |. ..
T Consensus         3 ~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~-~------~~-~~   73 (141)
T 1fs1_B            3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPED-D------EN-KE   73 (141)
T ss_dssp             EEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTCC------------------
T ss_pred             eEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcC-CCceecCCcCHHHHHHHHHHHHHhccCCCcccc-c------cc-cc
Confidence            499999999999999999999999999999866 778999999999999999999999988753221 1      11 11


Q ss_pred             CCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCH
Q 030962           86 GGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP  153 (168)
Q Consensus        86 ~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~  153 (168)
                      .....+++||++|++++.+.+|+|+.|||||+|++|+++||+++|++|+|||++|||++|||++||||
T Consensus        74 ~~~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~tp  141 (141)
T 1fs1_B           74 KRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE  141 (141)
T ss_dssp             -------HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC-------
T ss_pred             cchhhhhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCC
Confidence            34667899999999999999999999999999999999999999999999999999999999999997

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=99.95  E-value=1.8e-28  Score=169.04  Aligned_cols=97  Identities=29%  Similarity=0.501  Sum_probs=83.5

Q ss_pred             CCCCCeEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC--CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 030962            1 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDC--ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGAN   78 (168)
Q Consensus         1 m~~~~~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~--~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~   78 (168)
                      |++ ++|+|+|+||+.|.|++.+|++|++|++|+++..  ...+||||+|++.+|++|++||+||++++.+.        
T Consensus         1 m~~-~~v~L~SsDg~~f~V~~~vA~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~--------   71 (99)
T 1hv2_A            1 MSQ-DFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVS--------   71 (99)
T ss_dssp             CCC-SEEEEEETTTEEEEEEHHHHTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             CCC-cEEEEEecCCCEEEECHHHHHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCc--------
Confidence            666 7999999999999999999999999999999733  23689999999999999999999999765411        


Q ss_pred             CCCCCCCCCcccccccchhccccchHHHHHHHhhhcccCc
Q 030962           79 SNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNI  118 (168)
Q Consensus        79 ~~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I  118 (168)
                             .....+++|     +++++.||+|+.|||||+|
T Consensus        72 -------~~~~~i~~w-----~vd~~~lfeLi~AAnyLdI   99 (99)
T 1hv2_A           72 -------EDDDEIPEF-----EIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             -------SSCSSCCCC-----CCCHHHHHHHHHHHHHHCC
T ss_pred             -------cccccCCCc-----cCCHHHHHHHHHHHHHhCc
Confidence                   123457778     6899999999999999997

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=99.94  E-value=3.1e-27  Score=166.11  Aligned_cols=92  Identities=26%  Similarity=0.435  Sum_probs=79.2

Q ss_pred             CCeEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCC-----CCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 030962            4 PKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCA-----DNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGAN   78 (168)
Q Consensus         4 ~~~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~~-----~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~   78 (168)
                      +++|+|+|+||++|.|++.+|++|++|++|+++.+.     ..+||||+|++.+|++||+||+||++++.          
T Consensus        16 ~~~v~L~SsDG~~F~V~~~~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~----------   85 (112)
T 1vcb_B           16 AMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTN----------   85 (112)
T ss_dssp             -CEEEEECTTSCEEEEEHHHHHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSS----------
T ss_pred             CCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccC----------
Confidence            579999999999999999999999999999987542     25899999999999999999999997643          


Q ss_pred             CCCCCCCCCcccccccchhccccchHHHHHHHhhhcccCc
Q 030962           79 SNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNI  118 (168)
Q Consensus        79 ~~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I  118 (168)
                              ....+++|     ++++..||+|+.|||||+|
T Consensus        86 --------~~~~i~~w-----~vd~~~lfeLi~AAnyLdI  112 (112)
T 1vcb_B           86 --------SSTEIPEF-----PIAPEIALELLMAANFLDC  112 (112)
T ss_dssp             --------CSSCCCCC-----CCCHHHHHHHHHHHHHHTC
T ss_pred             --------CcCCCCCc-----ccCHHHHHHHHHHHHHhCc
Confidence                    11246677     6899999999999999997

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=99.93  E-value=3.4e-27  Score=161.74  Aligned_cols=91  Identities=26%  Similarity=0.443  Sum_probs=78.5

Q ss_pred             CeEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCC-----CCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 030962            5 KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCA-----DNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANS   79 (168)
Q Consensus         5 ~~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~~-----~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~   79 (168)
                      ++|+|+|+||+.|.|++.+|++|++|++|+++.+.     ..+||||+|++.+|++|++||+||++++.+          
T Consensus         1 ~~v~L~SsDg~~f~V~~~~A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~----------   70 (96)
T 2fnj_C            1 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNS----------   70 (96)
T ss_dssp             CEEEEECTTSCEEEEEHHHHTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSC----------
T ss_pred             CeEEEEecCCCEEEeCHHHHHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCC----------
Confidence            47999999999999999999999999999997543     258999999999999999999999976431          


Q ss_pred             CCCCCCCCcccccccchhccccchHHHHHHHhhhcccCc
Q 030962           80 NGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNI  118 (168)
Q Consensus        80 ~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I  118 (168)
                              ...+++|     +++++.||+|+.|||||+|
T Consensus        71 --------~~~i~~w-----~vd~~~l~eLi~AAnyLdI   96 (96)
T 2fnj_C           71 --------STEIPEF-----PIAPEIALELLMAANFLDC   96 (96)
T ss_dssp             --------CSCCCCC-----CCCTTTHHHHHHHHHHHTC
T ss_pred             --------cccCCCc-----ccCHHHHHHHHHHHHHhCc
Confidence                    1245677     6899999999999999997

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.91  E-value=8.2e-25  Score=150.07  Aligned_cols=90  Identities=27%  Similarity=0.449  Sum_probs=77.6

Q ss_pred             eEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCC-----CCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 030962            6 MIVLKSCDGESFEVEEAVALESTTIKHMIEDDCA-----DNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSN   80 (168)
Q Consensus         6 ~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~~-----~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~   80 (168)
                      +|+|+|+||++|.|++.+|.+|++|++|+++.+.     ..+||||+|++.+|++|++||+||++++.            
T Consensus         3 ~v~L~SsDg~~F~v~r~vA~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~------------   70 (97)
T 4ajy_C            3 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTN------------   70 (97)
T ss_dssp             EEEEECTTCCEEEEEHHHHTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTT------------
T ss_pred             EEEEEecCCcEEEecHHHHHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCC------------
Confidence            7999999999999999999999999999987542     56899999999999999999999987653            


Q ss_pred             CCCCCCCcccccccchhccccchHHHHHHHhhhcccCc
Q 030962           81 GAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNI  118 (168)
Q Consensus        81 ~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I  118 (168)
                            ....+++|     +++++.+++|+.||+||+.
T Consensus        71 ------~~~~i~~~-----~i~~~~l~eLl~AAnyL~~   97 (97)
T 4ajy_C           71 ------SSTEIPEF-----PIAPEIALELLMAANFLDC   97 (97)
T ss_dssp             ------CCSCCCCC-----CCCGGGHHHHHHHHHHHTC
T ss_pred             ------CcCCCCcC-----cCCHHHHHHHHHHHhhhCC
Confidence                  11356788     5899999999999999983

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.04  E-value=2.3e-10  Score=81.86  Aligned_cols=96  Identities=17%  Similarity=0.203  Sum_probs=72.0

Q ss_pred             EEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCC
Q 030962            7 IVLKSCDGESFEVEEAV-ALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATN   85 (168)
Q Consensus         7 i~l~S~DG~~~~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~~   85 (168)
                      ++|+. +|+.|.+++.+ +..|.+++.|+.... ...|.|++++..+++.+++|++..+-                    
T Consensus        28 v~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~-~~~i~l~~~~~~~f~~lL~fiYtg~~--------------------   85 (135)
T 2yy9_A           28 ATLDV-GGLVFKAHWSVLACCSHFFQRIYGDGT-GGSVVLPAGFAEIFGLLLDFFYTGHL--------------------   85 (135)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHCHHHHHTCC-----CCEEECGGGHHHHHHHHHHHHHSCC--------------------
T ss_pred             eEEEE-CCEEEehHHHHHHHhCHHHHHHHcCCC-CCeEEeCCCCHHHHHHHHHHHhCCCC--------------------
Confidence            56654 68999999997 568999999987543 56789999999999999999996331                    


Q ss_pred             CCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCH
Q 030962           86 GGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP  138 (168)
Q Consensus        86 ~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~  138 (168)
                                    .++.+.+.+|+.||++|+|+.|.+.|++++...+.++++
T Consensus        86 --------------~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~~~  124 (135)
T 2yy9_A           86 --------------ALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQ  124 (135)
T ss_dssp             --------------CCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC--------
T ss_pred             --------------CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCCCC
Confidence                          234456899999999999999999999999988888765

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=98.96  E-value=4.2e-09  Score=72.05  Aligned_cols=93  Identities=13%  Similarity=0.153  Sum_probs=75.2

Q ss_pred             eEEEEcCCC---CeEEecHHHH-HHhHHHHHHHHhCC--CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCC
Q 030962            6 MIVLKSCDG---ESFEVEEAVA-LESTTIKHMIEDDC--ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANS   79 (168)
Q Consensus         6 ~i~l~S~DG---~~~~v~~~~a-~~S~~l~~~l~~~~--~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~   79 (168)
                      -++|+..+|   +.|.+++.++ ..|++++.|+.+..  ....|.+++++..+++.+++|++...-              
T Consensus        10 Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~~--------------   75 (109)
T 2vkp_A           10 DVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDEI--------------   75 (109)
T ss_dssp             CEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------CCEEEETTSCHHHHHHHHHHHHHCCC--------------
T ss_pred             cEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCCc--------------
Confidence            477888876   9999999985 68999999997542  126789999999999999999996321              


Q ss_pred             CCCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHH
Q 030962           80 NGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADM  132 (168)
Q Consensus        80 ~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~  132 (168)
                                          .++.+.+.+|+.+|++|+++.|.+.|..++...
T Consensus        76 --------------------~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~  108 (109)
T 2vkp_A           76 --------------------DLEADTVLATLYAAKKYIVPALAKACVNFLETS  108 (109)
T ss_dssp             --------------------CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --------------------cCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence                                134466889999999999999999999998764

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=98.91  E-value=8.2e-09  Score=72.19  Aligned_cols=91  Identities=19%  Similarity=0.264  Sum_probs=75.2

Q ss_pred             eEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCCCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCC
Q 030962            6 MIVLKSCDGESFEVEEAVA-LESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAAT   84 (168)
Q Consensus         6 ~i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~   84 (168)
                      -++|+. +|+.|.+++.++ ..|++++.|+.+  ....|.+++++..+++.+++|++..+-                   
T Consensus        30 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~--~~~~i~l~~~~~~~f~~ll~~~Ytg~~-------------------   87 (121)
T 1buo_A           30 DVVIMV-DSQEFHAHRTVLACTSKMFEILFHR--NSQHYTLDFLSPKTFQQILEYAYTATL-------------------   87 (121)
T ss_dssp             CEEEEE-SSCEEEECHHHHHHHCHHHHHHTTS--CCSEEEECSSCHHHHHHHHHHHHHSCC-------------------
T ss_pred             CEEEEE-CCEEEehhHHHHhhcCHHHHHHHcC--CCcEEEeCCCCHHHHHHHHHhhcCCCc-------------------
Confidence            356664 689999999984 789999999875  356788999999999999999996321                   


Q ss_pred             CCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHh
Q 030962           85 NGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMI  133 (168)
Q Consensus        85 ~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i  133 (168)
                                     .++.+.+.+|+.||++|++++|.+.|+.++...|
T Consensus        88 ---------------~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~I  121 (121)
T 1buo_A           88 ---------------QAKAEDLDDLLYAAEILEIEYLEEQCLKMLETIQ  121 (121)
T ss_dssp             ---------------CCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             ---------------CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence                           1244668999999999999999999999987654

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=98.85  E-value=8.2e-09  Score=72.03  Aligned_cols=89  Identities=16%  Similarity=0.185  Sum_probs=72.0

Q ss_pred             EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCCCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCC
Q 030962            7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATN   85 (168)
Q Consensus         7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~~   85 (168)
                      ++|+. +|+.|.+++.++ ..|++++.|+.... ...|.+++++..+++.+++|++...-                    
T Consensus        27 v~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~-~~~i~l~~~~~~~f~~ll~~iYtg~~--------------------   84 (119)
T 3b84_A           27 ATLDV-GGLVFKAHWSVLACCSHFFQSLYGDGS-GGSVVLPAGFAEIFGLLLDFFYTGHL--------------------   84 (119)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHCHHHHHHHTTTT-CCCEEECGGGHHHHHHHHHHHHHSCC--------------------
T ss_pred             eEEEE-CCEEEEeeHHHHhhcCHHHHHHHCCCC-CCeEEeCCCCHHHHHHHHHHHcCCCC--------------------
Confidence            55654 689999999984 68999999997643 67789999999999999999996321                    


Q ss_pred             CCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHH
Q 030962           86 GGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVAD  131 (168)
Q Consensus        86 ~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~  131 (168)
                                    .++.+++.+|+.||++|+|+.|.+.|+.++..
T Consensus        85 --------------~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~  116 (119)
T 3b84_A           85 --------------ALTSGNRDQVLLAARELRVPEAVELCQSFKPK  116 (119)
T ss_dssp             --------------CCCTTTHHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred             --------------ccCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence                          12345578999999999999999999987743

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=98.84  E-value=2.5e-08  Score=69.06  Aligned_cols=88  Identities=15%  Similarity=0.189  Sum_probs=71.1

Q ss_pred             EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCCCCCCcccC--CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCC
Q 030962            7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDCADNGIPLP--NVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAA   83 (168)
Q Consensus         7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~--~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~   83 (168)
                      ++|+. +|+.|.+++.++ ..|++++.|+... ....|.|+  +++..+++.+++|++...   .               
T Consensus        25 v~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~-~~~~i~l~~~~~~~~~f~~ll~~~Yt~~---~---------------   84 (116)
T 2vpk_A           25 CTIVI-GEFQFKAHRNVLASFSEYFGAIYRST-SENNVFLDQSQVKADGFQKLLEFIYTGT---L---------------   84 (116)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHCHHHHHHHTTC-CCSCEECCTTTCCHHHHHHHHHHHHHSC---C---------------
T ss_pred             EEEEE-CCEEEeccHHHHhhcCHHHHHHHcCC-CCCeEEeecCCCCHHHHHHHHHHHcCCC---c---------------
Confidence            55555 589999999985 6899999999865 34556565  999999999999998532   1               


Q ss_pred             CCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHH
Q 030962           84 TNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVA  130 (168)
Q Consensus        84 ~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia  130 (168)
                                      .++.+.+.+|+.||++|+|+.|.+.|+.++.
T Consensus        85 ----------------~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~  115 (116)
T 2vpk_A           85 ----------------NLDSWNVKEIHQAADYLKVEEVVTKCKIKME  115 (116)
T ss_dssp             ----------------CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             ----------------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence                            1234578999999999999999999998873

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=98.84  E-value=3.2e-08  Score=72.64  Aligned_cols=101  Identities=16%  Similarity=0.217  Sum_probs=81.7

Q ss_pred             EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC---CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 030962            7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDC---ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGA   82 (168)
Q Consensus         7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~   82 (168)
                      ++|+. +|+.|.+++.++ ..|++++.|+....   ....|.+++++..+++.+++|++...-                 
T Consensus        37 v~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~-----------------   98 (172)
T 3htm_A           37 CCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA-----------------   98 (172)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCC-----------------
T ss_pred             eEEEE-CCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCC-----------------
Confidence            56665 689999999985 68999999998542   246789999999999999999986431                 


Q ss_pred             CCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHH
Q 030962           83 ATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIR  142 (168)
Q Consensus        83 ~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir  142 (168)
                                       .++.+.+.+|+.+|++|+++.|.+.|..++...+...+.-++.
T Consensus        99 -----------------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~  141 (172)
T 3htm_A           99 -----------------PNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEIL  141 (172)
T ss_dssp             -----------------TTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHH
T ss_pred             -----------------CCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHH
Confidence                             1234567899999999999999999999999877777765553

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=98.83  E-value=3.1e-08  Score=68.94  Aligned_cols=89  Identities=18%  Similarity=0.282  Sum_probs=71.9

Q ss_pred             eEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC---CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCC
Q 030962            6 MIVLKSCDGESFEVEEAVA-LESTTIKHMIEDDC---ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNG   81 (168)
Q Consensus         6 ~i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~   81 (168)
                      -++|+. +|+.|.+++.++ ..|++++.|+.+..   ....|.+++++..+++.+++|++...   .             
T Consensus        27 Dv~l~v-~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~---~-------------   89 (120)
T 2if5_A           27 DVVILV-EGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTAT---L-------------   89 (120)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSC---C-------------
T ss_pred             CeEEEE-CCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCC---C-------------
Confidence            356665 689999999985 58999999998542   24578899999999999999999532   1             


Q ss_pred             CCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHH
Q 030962           82 AATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTV  129 (168)
Q Consensus        82 ~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~i  129 (168)
                                        .++.+.+.+|+.||++|+|++|.+.|..++
T Consensus        90 ------------------~~~~~~~~~ll~~A~~~~i~~L~~~C~~~L  119 (120)
T 2if5_A           90 ------------------TVSTANVGDILSAARLLEIPAVSHVCADLL  119 (120)
T ss_dssp             ------------------CCCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ------------------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence                              134567899999999999999999999875

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=98.83  E-value=2e-08  Score=70.01  Aligned_cols=88  Identities=17%  Similarity=0.227  Sum_probs=72.3

Q ss_pred             eEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCCCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCC
Q 030962            6 MIVLKSCDGESFEVEEAVA-LESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAAT   84 (168)
Q Consensus         6 ~i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~   84 (168)
                      -++|+. +|+.|.+++.++ ..|++++.|+.+.  ...|.+++++..+++.+++|++..+-                   
T Consensus        29 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~~-------------------   86 (119)
T 2q81_A           29 DCTFVV-DGVHFKAHKAVLAACSEYFKMLFVDQ--KDVVHLDISNAAGLGQVLEFMYTAKL-------------------   86 (119)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHC--CSGGGGGGCCHHHHHHHHHHHHHSCC-------------------
T ss_pred             ceEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHHHcCCCC-------------------
Confidence            356654 689999999985 6899999999863  56788888999999999999996321                   


Q ss_pred             CCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHH
Q 030962           85 NGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVA  130 (168)
Q Consensus        85 ~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia  130 (168)
                                     .++.+++.+|+.||++|+|+.|.+.|+.+++
T Consensus        87 ---------------~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~  117 (119)
T 2q81_A           87 ---------------SLSPENVDDVLAVATFLQMQDIITACHALKS  117 (119)
T ss_dssp             ---------------CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             ---------------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence                           1334568999999999999999999999874

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=98.80  E-value=7.5e-09  Score=73.19  Aligned_cols=89  Identities=15%  Similarity=0.337  Sum_probs=68.7

Q ss_pred             EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCCCCCCcccC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCC
Q 030962            7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDCADNGIPLP-NVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAAT   84 (168)
Q Consensus         7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~-~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~   84 (168)
                      ++|.. +|+.|.+++.++ ..|.+++.|+... ....|.|| +++..+++.+++|++..+                    
T Consensus        36 v~l~v-~~~~~~~Hk~vLaa~S~~F~~~f~~~-~~~~i~l~~~~~~~~f~~ll~~iYtg~--------------------   93 (129)
T 3ga1_A           36 VSVVV-KGHAFKAHRAVLAASSSYFRDLFNNS-RSAVVELPAAVQPQSFQQILSFCYTGR--------------------   93 (129)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHBHHHHHHHHHC-CCSEEECCTTCCHHHHHHHHHHHHHSE--------------------
T ss_pred             eEEEE-CCEEEEehHHHHHHcCHHHHHHHcCC-CCCEEEECCCCCHHHHHHHHHHHhCCc--------------------
Confidence            56665 799999999985 5899999999875 46678997 899999999999998532                    


Q ss_pred             CCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHH
Q 030962           85 NGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVAD  131 (168)
Q Consensus        85 ~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~  131 (168)
                                    +.++.+.+.+|+.||++|+|+.|.+.|+.++..
T Consensus        94 --------------~~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~  126 (129)
T 3ga1_A           94 --------------LSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLK  126 (129)
T ss_dssp             --------------EECCTTTHHHHHHHHHHTTBTTSSCC-------
T ss_pred             --------------cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                          123455689999999999999999999998854

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=98.77  E-value=5.1e-08  Score=68.53  Aligned_cols=90  Identities=14%  Similarity=0.249  Sum_probs=73.2

Q ss_pred             eEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC--CCCCccc-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCC
Q 030962            6 MIVLKSCDGESFEVEEAVA-LESTTIKHMIEDDC--ADNGIPL-PNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNG   81 (168)
Q Consensus         6 ~i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~--~~~~Ipl-~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~   81 (168)
                      -++|+. +|+.|.+++.++ ..|++++.|+....  ....|.| ++++..+++.+++|++...   .             
T Consensus        31 Dv~l~v-~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~---~-------------   93 (127)
T 1r29_A           31 DVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSR---L-------------   93 (127)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSC---C-------------
T ss_pred             CEEEEE-CCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCC---c-------------
Confidence            356665 589999999985 68999999997543  2456888 8999999999999998532   1             


Q ss_pred             CCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHH
Q 030962           82 AATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVA  130 (168)
Q Consensus        82 ~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia  130 (168)
                                        .++.+.+.+|+.||++|+|+.|.+.|..++.
T Consensus        94 ------------------~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~  124 (127)
T 1r29_A           94 ------------------NLREGNIMAVMATAMYLQMEHVVDTCRKFIK  124 (127)
T ss_dssp             ------------------CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ------------------CcCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                              1344678999999999999999999999885

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=98.75  E-value=3e-08  Score=71.61  Aligned_cols=88  Identities=20%  Similarity=0.354  Sum_probs=71.5

Q ss_pred             EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC-----CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 030962            7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDC-----ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSN   80 (168)
Q Consensus         7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~-----~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~   80 (168)
                      ++|+. +|+.|.+++.++ ..|++++.|+....     ....|.|++++..+++.+++|++.-.   .            
T Consensus        50 v~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~---~------------  113 (144)
T 2ppi_A           50 AHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQ---I------------  113 (144)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSC---C------------
T ss_pred             eEEEE-CCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCC---C------------
Confidence            55655 689999999985 58999999998642     34578999999999999999998421   1            


Q ss_pred             CCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHH
Q 030962           81 GAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTV  129 (168)
Q Consensus        81 ~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~i  129 (168)
                                         .++.+.+.+|+.||++|+|++|.+.|+.++
T Consensus       114 -------------------~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L  143 (144)
T 2ppi_A          114 -------------------RLNEDTIQDVVQAADLLLLTDLKTLCCEFL  143 (144)
T ss_dssp             -------------------CCCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             -------------------CCCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence                               134567899999999999999999998764

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=98.73  E-value=2.2e-08  Score=71.60  Aligned_cols=98  Identities=14%  Similarity=0.195  Sum_probs=72.0

Q ss_pred             eEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC---CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCC
Q 030962            6 MIVLKSCDGESFEVEEAVA-LESTTIKHMIEDDC---ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNG   81 (168)
Q Consensus         6 ~i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~   81 (168)
                      -++|+. +|+.|.+++.++ ..|++++.++....   ....|.+++++..+++.+++|++...-                
T Consensus        27 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~----------------   89 (145)
T 4eoz_A           27 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA----------------   89 (145)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCC----------------
T ss_pred             ceEEEE-CCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCcc----------------
Confidence            356665 689999999985 68999999998542   246788999999999999999996421                


Q ss_pred             CCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCH
Q 030962           82 AATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP  138 (168)
Q Consensus        82 ~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~  138 (168)
                                        .++.+.+.+|+.+|++|+++.|.+.|+.++...+...+.
T Consensus        90 ------------------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~  128 (145)
T 4eoz_A           90 ------------------PNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENA  128 (145)
T ss_dssp             ------------------TTGGGTHHHHHHHHHHTTCHHHHHHHHCC----------
T ss_pred             ------------------CCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHH
Confidence                              123456789999999999999999999999876654443

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=98.67  E-value=4.7e-08  Score=69.86  Aligned_cols=94  Identities=13%  Similarity=0.206  Sum_probs=74.8

Q ss_pred             EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCCC-CCCcccC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCC
Q 030962            7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDCA-DNGIPLP-NVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAA   83 (168)
Q Consensus         7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~-~~~Ipl~-~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~   83 (168)
                      ++|+. +|+.|.+++.++ ..|.+++.|+..... ...|.++ +++...++.+++|++..+   .               
T Consensus        39 v~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~---~---------------   99 (138)
T 2z8h_A           39 VTVLV-EGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAK---L---------------   99 (138)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSC---C---------------
T ss_pred             eEEEE-CCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCC---c---------------
Confidence            55655 589999999985 689999999986432 3457786 899999999999999632   1               


Q ss_pred             CCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcC
Q 030962           84 TNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKG  135 (168)
Q Consensus        84 ~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~  135 (168)
                                      .++.+.+.+|+.||++|+|+.|.+.|+.++...+..
T Consensus       100 ----------------~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~  135 (138)
T 2z8h_A          100 ----------------ILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLD  135 (138)
T ss_dssp             ----------------CCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSC
T ss_pred             ----------------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence                            134456899999999999999999999998665543

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=98.59  E-value=1.4e-08  Score=71.23  Aligned_cols=87  Identities=17%  Similarity=0.268  Sum_probs=70.0

Q ss_pred             EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC-CCCCcccCC-CCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCC
Q 030962            7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDC-ADNGIPLPN-VTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAA   83 (168)
Q Consensus         7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~-~~~~Ipl~~-i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~   83 (168)
                      ++|+. +|+.|.+++.++ ..|.+++.|+.... ....|.+++ ++..+++.+++|++..+                   
T Consensus        35 v~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~-------------------   94 (125)
T 3ohu_A           35 VTLIV-ERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAK-------------------   94 (125)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSE-------------------
T ss_pred             eEEEE-CCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCc-------------------
Confidence            56664 689999999984 68999999997643 245688888 99999999999998421                   


Q ss_pred             CCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHH
Q 030962           84 TNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQT  128 (168)
Q Consensus        84 ~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~  128 (168)
                                     +.++.+.+.+|+.||++|+|+.|.+.|+++
T Consensus        95 ---------------~~~~~~~v~~ll~~A~~l~i~~L~~~C~~~  124 (125)
T 3ohu_A           95 ---------------LLLSRENIREVIRCAEFLRMHNLEDSCFSF  124 (125)
T ss_dssp             ---------------EEECTTTHHHHHHHHHHHTBSSCTTSSCCC
T ss_pred             ---------------eEECHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence                           124556789999999999999999988753

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=98.59  E-value=8.6e-08  Score=76.01  Aligned_cols=102  Identities=12%  Similarity=0.182  Sum_probs=77.3

Q ss_pred             eEEEEcC--CCCeEEecHHHH-HHhHHHHHHHHhCC---CCCCcccC------CCCHHHHHHHHHHHHhccCCCCCCCCC
Q 030962            6 MIVLKSC--DGESFEVEEAVA-LESTTIKHMIEDDC---ADNGIPLP------NVTGKILAKVVEYCKKHVEVPTTQDSN   73 (168)
Q Consensus         6 ~i~l~S~--DG~~~~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~------~i~s~~L~~Ii~wc~~h~~~~~~~~~~   73 (168)
                      -++|+..  ||+.|.+++.++ ..|++++.|+.+..   ....|.|+      +++..+++.+++|++...         
T Consensus        34 Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~---------  104 (279)
T 3i3n_A           34 DITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGR---------  104 (279)
T ss_dssp             CEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSE---------
T ss_pred             CeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCC---------
Confidence            3667765  799999999985 57999999986432   24568887      899999999999999532         


Q ss_pred             CCCCCCCCCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHH
Q 030962           74 TSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEI  141 (168)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eei  141 (168)
                                               +.++.+.+.+|+.||++|+++.|.+.|+.++...+...+.-.+
T Consensus       105 -------------------------~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i  147 (279)
T 3i3n_A          105 -------------------------IRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAI  147 (279)
T ss_dssp             -------------------------EEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHH
T ss_pred             -------------------------cccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHH
Confidence                                     1234566889999999999999999999999887776665444

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=98.58  E-value=1.2e-07  Score=74.28  Aligned_cols=97  Identities=20%  Similarity=0.321  Sum_probs=72.7

Q ss_pred             EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC-----CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 030962            7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDC-----ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSN   80 (168)
Q Consensus         7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~-----~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~   80 (168)
                      ++|.. +|+.|.+++.++ ..|++++.|+....     ....|++++++..+++.+++|++...-               
T Consensus        34 v~l~v-~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~---------------   97 (256)
T 3hve_A           34 AHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQI---------------   97 (256)
T ss_dssp             EEEEE-TTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCC---------------
T ss_pred             eEEEE-CCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCC---------------
Confidence            55554 689999999986 47999999987532     245789999999999999999996321               


Q ss_pred             CCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCH
Q 030962           81 GAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP  138 (168)
Q Consensus        81 ~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~  138 (168)
                                         .++.+.+.+|+.||++|+++.|.+.|+.++...+.-.+.
T Consensus        98 -------------------~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~  136 (256)
T 3hve_A           98 -------------------RLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENC  136 (256)
T ss_dssp             -------------------CCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTT
T ss_pred             -------------------cccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhH
Confidence                               123456788999999999999999999988776655443

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=98.50  E-value=6.4e-08  Score=67.76  Aligned_cols=84  Identities=14%  Similarity=0.162  Sum_probs=67.5

Q ss_pred             EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCCCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCC
Q 030962            7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATN   85 (168)
Q Consensus         7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~~   85 (168)
                      ++|.. +|+.|.+++.++ ..|.+++.      ....|.+++++..+++.+++|++.-+                     
T Consensus        33 v~l~v-~~~~f~aHk~vLaa~S~yF~~------~~~~i~l~~v~~~~f~~ll~fiYtg~---------------------   84 (119)
T 3m5b_A           33 TLITV-GSQEFPAHSLVLAGVSQQLGR------RGQWALGEGISPSTFAQLLNFVYGES---------------------   84 (119)
T ss_dssp             EEEEE-TTEEEEECHHHHHTTCGGGCC------CEEEECCSSCCHHHHHHHHHHHTTCC---------------------
T ss_pred             eEEEE-CCEEEeeEHHHHHHcCHHHhc------CCCEEEeCCCCHHHHHHHHHHHcCCC---------------------
Confidence            55654 699999999985 57888874      24568899999999999999998421                     


Q ss_pred             CCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHH
Q 030962           86 GGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVAD  131 (168)
Q Consensus        86 ~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~  131 (168)
                                   +.++.+++.+|+.||++|+|+.|.+.|++++.+
T Consensus        85 -------------~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~  117 (119)
T 3m5b_A           85 -------------VELQPGELRPLQEAARALGVQSLEEACWRARGD  117 (119)
T ss_dssp             -------------EEECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             -------------cCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence                         135667889999999999999999999998754

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=98.47  E-value=8.3e-07  Score=71.25  Aligned_cols=101  Identities=16%  Similarity=0.216  Sum_probs=80.1

Q ss_pred             eEEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCC---CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCC
Q 030962            6 MIVLKSCDGESFEVEEAVA-LESTTIKHMIEDDC---ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNG   81 (168)
Q Consensus         6 ~i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~---~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~   81 (168)
                      -++|.. +|+.|.+++.++ ..|++++.|+....   ....|.|++++..+++.+++|++...   .             
T Consensus       176 Dv~l~v-~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~---~-------------  238 (312)
T 3hqi_A          176 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGK---A-------------  238 (312)
T ss_dssp             CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSC---C-------------
T ss_pred             ceEEEE-CCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCC---C-------------
Confidence            355655 789999999984 78999999987532   34678999999999999999998532   1             


Q ss_pred             CCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHH
Q 030962           82 AATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEI  141 (168)
Q Consensus        82 ~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eei  141 (168)
                                        .++.+.+.+|+.||++|+++.|...|..++...+...+.-++
T Consensus       239 ------------------~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~  280 (312)
T 3hqi_A          239 ------------------PNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEI  280 (312)
T ss_dssp             ------------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHH
T ss_pred             ------------------CChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHH
Confidence                              123478899999999999999999999999877766666544

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=98.41  E-value=1.2e-07  Score=66.43  Aligned_cols=88  Identities=15%  Similarity=0.272  Sum_probs=69.9

Q ss_pred             EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCCC-CCCcccC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCC
Q 030962            7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDCA-DNGIPLP-NVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAA   83 (168)
Q Consensus         7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~-~~~Ipl~-~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~   83 (168)
                      ++|+. +|+.|.+++.++ ..|++++.|+.+... ...|.++ +++...++.+++|++..+                   
T Consensus        32 v~l~v-~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~-------------------   91 (124)
T 2ihc_A           32 VTIFV-EGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAK-------------------   91 (124)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSE-------------------
T ss_pred             EEEEE-CCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCC-------------------
Confidence            55554 589999999985 689999999976432 3457785 899999999999999532                   


Q ss_pred             CCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHH
Q 030962           84 TNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTV  129 (168)
Q Consensus        84 ~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~i  129 (168)
                                     +.++.+.+.+|+.||++|+++.|.+.|+.++
T Consensus        92 ---------------~~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l  122 (124)
T 2ihc_A           92 ---------------LILSKENVDEVCKCVEFLSVHNIEESCFQFL  122 (124)
T ss_dssp             ---------------EEEETTTHHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred             ---------------cccCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence                           1234567899999999999999999998764

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=98.40  E-value=6.3e-07  Score=62.16  Aligned_cols=81  Identities=17%  Similarity=0.289  Sum_probs=66.2

Q ss_pred             EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCCCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCC
Q 030962            7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATN   85 (168)
Q Consensus         7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~~   85 (168)
                      ++|+. +|+.|.+++.++ ..|++++.++...  ...|.+++++..+++.+++|++..+   .                 
T Consensus        34 v~l~v-~~~~f~aHk~vLaa~S~~F~~~f~~~--~~~i~l~~~~~~~f~~~l~~~Ytg~---~-----------------   90 (116)
T 3fkc_A           34 VTVIV-EDRKFRAHKNILSASSTYFHQLFSVA--GQVVELSFIRAEIFAEILNYIYSSK---I-----------------   90 (116)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHTTSC---C-----------------
T ss_pred             EEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHhhcCCC---c-----------------
Confidence            55654 689999999985 7899999998753  5678899999999999999998421   0                 


Q ss_pred             CCcccccccchhccccchHHHHHHHhhhcccCchhHHH
Q 030962           86 GGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLD  123 (168)
Q Consensus        86 ~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~  123 (168)
                                   ..++.+.+.+|+.||++|+|++|.+
T Consensus        91 -------------~~~~~~~~~~ll~~A~~l~i~~L~~  115 (116)
T 3fkc_A           91 -------------VRVRSDLLDELIKSGQLLGVKFIAA  115 (116)
T ss_dssp             -------------CSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred             -------------CCCCHHHHHHHHHHHHHhCccccCc
Confidence                         0246678899999999999999875

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=90.90  E-value=1.4  Score=29.38  Aligned_cols=93  Identities=14%  Similarity=0.226  Sum_probs=62.2

Q ss_pred             CCeEEEEcCCCCeEEecHHHHHHh--HHHHHHHHhC---C----CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCC
Q 030962            4 PKMIVLKSCDGESFEVEEAVALES--TTIKHMIEDD---C----ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNT   74 (168)
Q Consensus         4 ~~~i~l~S~DG~~~~v~~~~a~~S--~~l~~~l~~~---~----~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~   74 (168)
                      ++.|+|- -.|+.|.+++..+..-  ..|..|+...   +    ....+=+ +-++..++.|+.|+...+-.-+ .    
T Consensus         5 ~~~v~LN-VGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p-~----   77 (107)
T 3drz_A            5 SKWVRLN-VGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVIN-K----   77 (107)
T ss_dssp             CCEEEEE-ETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCC-T----
T ss_pred             CCEEEEE-ECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCC-C----
Confidence            3455554 3599999999887542  3567776532   1    1233434 7899999999999997532111 0    


Q ss_pred             CCCCCCCCCCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHH
Q 030962           75 SGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVAD  131 (168)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~  131 (168)
                                               ++.   ...++..|.|.+|.+|++.|-..|..
T Consensus        78 -------------------------~~~---~~~l~~Ea~fy~l~~L~~~l~~~i~~  106 (107)
T 3drz_A           78 -------------------------DLA---EEGVLEEAEFYNITSLIKLVKDKIRE  106 (107)
T ss_dssp             -------------------------TSC---HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             -------------------------CCC---HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence                                     111   24578899999999999999877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d1nexa1	70	a.157.1.1 (A:116-185) Centromere DNA-binding prote	2e-42
d1fs1b1	55	a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45,	6e-34
d1hv2a_	99	d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomy	1e-30
d2c9wc1	96	d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens	2e-28
d1fs1b2	61	d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Sk	8e-24
d1nexa2	72	d.42.1.1 (A:4-103) Centromere DNA-binding protein	3e-23

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 70

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  133 bits (337), Expect = 2e-42
 Identities = 46/70 (65%), Positives = 59/70 (84%)

Query: 91  LKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKND 150
           + SWD +F+KVDQ  L+++ILAANYLNIK LLD  C+ VA+MI+G++PEEIR+TFNI ND
Sbjct: 1   VDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVND 60

Query: 151 FTPEEEEEVR 160
           FTPEEE  +R
Sbjct: 61  FTPEEEAAIR 70

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 6e-34
 Identities = 44/54 (81%), Positives = 51/54 (94%)

Query: 93  SWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFN 146
            WD +F+KVDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTFN
Sbjct: 2   VWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN 55

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (262), Expect = 1e-30
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 23/120 (19%)

Query: 1   MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDC--ADNGIPLPNVTGKILAKVVE 58
           MS    + L S D + +E+  + A+ S T+K MIE     +   I L      IL K VE
Sbjct: 1   MSQ-DFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVE 59

Query: 59  YCKKHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNI 118
           Y   +++     +                ++++  ++     +      +L+LAA+YL+I
Sbjct: 60  YLNYNLKYSGVSED---------------DDEIPEFE-----IPTEMSLELLLAADYLSI 99

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.1 bits (247), Expect = 2e-28
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 28/116 (24%)

Query: 7   IVLKSCDGESFEVEEAVALESTTIKHMIEDDCA-----DNGIPLPNVTGKILAKVVEYCK 61
           + L S DG  F V+   AL S TIK M+           N +    +   +L+KV  Y  
Sbjct: 3   VKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT 62

Query: 62  KHVEVPTTQDSNTSGANSNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLN 117
             V                         ++  +      +      +L++AAN+L+
Sbjct: 63  YKVRYT------------------NSSTEIPEFP-----IAPEIALELLMAANFLD 95

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.3 bits (214), Expect = 8e-24
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 7  IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVE 65
          I L+S DGE FEV+  +A +S TIK M+ED   D  +PLPNV   IL KV+++C  H +
Sbjct: 3  IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP-VPLPNVNAAILKKVIQWCTHHKD 60

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.3 bits (211), Expect = 3e-23
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 6  MIVLKSCDGESFEVEEAVALESTTIKHMIED-------DCADNGIPLPNVTGKILAKVVE 58
           +VL S +GE F V++ +A  S  +K+ + D       D  +  +P+PNV   +L KV+E
Sbjct: 2  NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIE 61

Query: 59 YCKKHVEVP 67
          + + H +  
Sbjct: 62 WAEHHRDSN 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1nexa1	70	Centromere DNA-binding protein complex Cbf3 subuni	99.96
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	99.95
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1fs1b1	55	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	99.89
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	99.85
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	99.84
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	98.97
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	98.79

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.4e-30  Score=164.07  Aligned_cols=70  Identities=66%  Similarity=1.142  Sum_probs=67.3

Q ss_pred             ccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHHHHH
Q 030962           91 LKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVR  160 (168)
Q Consensus        91 ~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir~~f~i~~d~t~ee~~~i~  160 (168)
                      +++||++|++++.+.||+|+.|||||+|++|+++||++||.+|+||||+|||++|||++|+||||++++|
T Consensus         1 i~~wD~~F~~~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt~eeiR~~f~I~~D~t~eEe~~ir   70 (70)
T d1nexa1           1 VDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIR   70 (70)
T ss_dssp             CCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHTCC
T ss_pred             CcHHHHHHHhcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHhcC
Confidence            4689999999999999999999999999999999999999999999999999999999999999998764

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.3e-28  Score=168.07  Aligned_cols=97  Identities=29%  Similarity=0.513  Sum_probs=82.6

Q ss_pred             CCCCCeEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC--CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 030962            1 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDC--ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGAN   78 (168)
Q Consensus         1 m~~~~~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~--~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~   78 (168)
                      ||+ ++|+|+|+||+.|.|++.+|++|++|++|+++.+  .+.+||||+|+|.+|++||+||+||+.++.+..       
T Consensus         1 m~~-~~v~L~SsDg~~f~V~~~~A~~S~tI~~ml~~~~~e~~~~Ipl~~V~s~iL~kViey~~~h~~~~~~~~-------   72 (99)
T d1hv2a_           1 MSQ-DFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSE-------   72 (99)
T ss_dssp             CCC-SEEEEEETTTEEEEEEHHHHTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCS-------
T ss_pred             CCC-CeEEEEcCCCCEEEeeHHHHHHhHHHHHHHHccCCCCcCccccCCCChHHHHHHHHHHHHhhhCcCccc-------
Confidence            676 6999999999999999999999999999999765  356899999999999999999999998754111       


Q ss_pred             CCCCCCCCCcccccccchhccccchHHHHHHHhhhcccCc
Q 030962           79 SNGAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNI  118 (168)
Q Consensus        79 ~~~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I  118 (168)
                              ....+++|     .+++..||+|+.|||||+|
T Consensus        73 --------~~~~~~ef-----dvd~~~l~eLi~AAnyLdI   99 (99)
T d1hv2a_          73 --------DDDEIPEF-----EIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             --------SCSSCCCC-----CCCHHHHHHHHHHHHHHCC
T ss_pred             --------ccccCCCC-----CCCHHHHHHHHHHHhhhCC
Confidence                    12234555     5889999999999999997

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-26  Score=156.28  Aligned_cols=89  Identities=27%  Similarity=0.463  Sum_probs=72.0

Q ss_pred             eEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCC-----CCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 030962            6 MIVLKSCDGESFEVEEAVALESTTIKHMIEDDC-----ADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSN   80 (168)
Q Consensus         6 ~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~-----~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~   80 (168)
                      +|+|+|+||..|.|++++|++|++|++|+++.+     ...+||||+|+|.+|++|++||+||+.++..           
T Consensus         2 ~i~L~SsDg~~f~V~~~~A~~S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~~h~~~~~~-----------   70 (96)
T d2c9wc1           2 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNS-----------   70 (96)
T ss_dssp             EEEEECTTCCEEEEEHHHHTTSHHHHHC------------CEEECTTCCHHHHHHHHHHHHHHHHTC-------------
T ss_pred             EEEEEcCCCCEEEeeHHHHHHhHHHHHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHHhhccCcCC-----------
Confidence            699999999999999999999999999998653     2467999999999999999999999877651           


Q ss_pred             CCCCCCCcccccccchhccccchHHHHHHHhhhcccC
Q 030962           81 GAATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLN  117 (168)
Q Consensus        81 ~~~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~  117 (168)
                             ...+++|     +++++.+|+|+.||||||
T Consensus        71 -------~~~~~~f-----di~~~~l~eLi~AAnyLd   95 (96)
T d2c9wc1          71 -------STEIPEF-----PIAPEIALELLMAANFLD   95 (96)
T ss_dssp             ---------CCCCC-----CCCHHHHHHHHHHHHHHT
T ss_pred             -------cCCCCCC-----cCCHHHHHHHHHHHhhhc
Confidence                   1234566     578999999999999997

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.3e-24  Score=130.16  Aligned_cols=55  Identities=80%  Similarity=1.284  Sum_probs=53.7

Q ss_pred             cccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHHHHhcCCCHHHHHhhcC
Q 030962           92 KSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFN  146 (168)
Q Consensus        92 ~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia~~i~~ks~eeir~~f~  146 (168)
                      |+||++|++++.+.||+|+.|||||+|++|+++||++||.+|+||||+|||++|+
T Consensus         1 p~wD~~F~~~d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~ikgKt~eeiR~~fn   55 (55)
T d1fs1b1           1 PVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN   55 (55)
T ss_dssp             CHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC
T ss_pred             ChHhHHHHHcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCHHHHHHHhC
Confidence            6899999999999999999999999999999999999999999999999999996

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=3e-22  Score=128.54  Aligned_cols=63  Identities=32%  Similarity=0.524  Sum_probs=54.9

Q ss_pred             eEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCC-------CCCcccCCCCHHHHHHHHHHHHhccCCCC
Q 030962            6 MIVLKSCDGESFEVEEAVALESTTIKHMIEDDCA-------DNGIPLPNVTGKILAKVVEYCKKHVEVPT   68 (168)
Q Consensus         6 ~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~~-------~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~   68 (168)
                      +|+|+|+||++|.|++++|++|++|++||++.+.       ..+||||+|+|.+|++|++||+||+++++
T Consensus         2 ~I~L~SsDg~~F~v~~~~a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~~V~s~iL~kVieyc~~H~~dp~   71 (72)
T d1nexa2           2 NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNF   71 (72)
T ss_dssp             EEEEECTTSCEEEEEHHHHTTSHHHHHTC-------------CEEECTTCCHHHHHHHHHHHHHTTTCCC
T ss_pred             eeEEEeCCCCEEEecHHHHHHHHHHHHHHHhcCccccccCCCCcccCCCcCHHHHHHHHHHHHHccCCCC
Confidence            6999999999999999999999999999987652       24799999999999999999999999886

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.9e-22  Score=123.06  Aligned_cols=61  Identities=46%  Similarity=0.706  Sum_probs=56.9

Q ss_pred             CeEEEEcCCCCeEEecHHHHHHhHHHHHHHHhCCCCCCcccCCCCHHHHHHHHHHHHhccCC
Q 030962            5 KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEV   66 (168)
Q Consensus         5 ~~i~l~S~DG~~~~v~~~~a~~S~~l~~~l~~~~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~   66 (168)
                      ..|+|+|+||+.|.|++++|++|++|++|+++.+ .++||||+|+|.+|++|++||+||+++
T Consensus         1 p~I~L~SsDg~~f~v~~~~a~~S~tI~~ml~~~~-~~~Ipl~~V~s~iL~kVieyc~~H~~d   61 (61)
T d1fs1b2           1 PSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDD   61 (61)
T ss_dssp             CEEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEecCCCEEEecHHHHHHhHHHHHHHhcCC-CCCcccCCcCHHHHHHHHHHHHHccCC
Confidence            3699999999999999999999999999999865 568999999999999999999999864

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.4e-09  Score=74.90  Aligned_cols=87  Identities=21%  Similarity=0.326  Sum_probs=72.6

Q ss_pred             EEEEcCCCCeEEecHHH-HHHhHHHHHHHHhCCCCCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCC
Q 030962            7 IVLKSCDGESFEVEEAV-ALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGAATN   85 (168)
Q Consensus         7 i~l~S~DG~~~~v~~~~-a~~S~~l~~~l~~~~~~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~~~~   85 (168)
                      ++|+. +|+.|.+++.+ +..|+++++++.+.  ...+.+++++..+++.+++|++..+                     
T Consensus        31 v~l~v-~~~~~~aHk~vLaa~S~~F~~lf~~~--~~~i~~~~v~~~~f~~ll~~~Ytg~---------------------   86 (121)
T d1buoa_          31 VVIMV-DSQEFHAHRTVLACTSKMFEILFHRN--SQHYTLDFLSPKTFQQILEYAYTAT---------------------   86 (121)
T ss_dssp             EEEEE-SSCEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHHHSC---------------------
T ss_pred             EEEEE-CCEEEEEEHHHhcccChhhhhhccCc--cceeecCCCCHHHHHHHHHheEccc---------------------
Confidence            56665 78899999997 57899999999653  5568899999999999999998532                     


Q ss_pred             CCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHHH
Q 030962           86 GGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVA  130 (168)
Q Consensus        86 ~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~ia  130 (168)
                                   +.++.+.+.+|+.||++|+|++|.+.|++++-
T Consensus        87 -------------i~l~~~~v~~ll~~A~~l~~~~L~~~C~~~L~  118 (121)
T d1buoa_          87 -------------LQAKAEDLDDLLYAAEILEIEYLEEQCLKMLE  118 (121)
T ss_dssp             -------------CCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             -------------cCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                         12456678999999999999999999999873

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.5e-08  Score=69.48  Aligned_cols=88  Identities=13%  Similarity=0.219  Sum_probs=69.6

Q ss_pred             EEEEcCCCCeEEecHHHH-HHhHHHHHHHHhCCC---CCCcccCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 030962            7 IVLKSCDGESFEVEEAVA-LESTTIKHMIEDDCA---DNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDSNTSGANSNGA   82 (168)
Q Consensus         7 i~l~S~DG~~~~v~~~~a-~~S~~l~~~l~~~~~---~~~Ipl~~i~s~~L~~Ii~wc~~h~~~~~~~~~~~~~~~~~~~   82 (168)
                      ++|+. +|+.|.+++.++ ..|++++.|+.+...   ...+-+++++++.++.+++|++..+                  
T Consensus        28 v~l~v-~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~------------------   88 (122)
T d1r29a_          28 VVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSR------------------   88 (122)
T ss_dssp             EEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSC------------------
T ss_pred             EEEEE-CCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCCe------------------
Confidence            56664 788999999985 689999999975432   1223457899999999999999532                  


Q ss_pred             CCCCCcccccccchhccccchHHHHHHHhhhcccCchhHHHHHHHHH
Q 030962           83 ATNGGEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTV  129 (168)
Q Consensus        83 ~~~~~~~~~~~wd~eFl~~~~~~l~~Ll~AA~~L~I~~L~~~~~~~i  129 (168)
                                      +.++.+.+.+|+.||++|+|+.|.+.|.+++
T Consensus        89 ----------------~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L  119 (122)
T d1r29a_          89 ----------------LNLREGNIMAVMATAMYLQMEHVVDTCRKFI  119 (122)
T ss_dssp             ----------------CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----------------ecCchhhHHHHHHHHHHHCcHHHHHHHHHHH
Confidence                            1234566899999999999999999999886