Citrus Sinensis ID: 030970

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MAASLASKWSRVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQRTFIQMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA
Secondary Structure (PSIPRED)
cHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEcccEEEEEccccccEEEEEEEEccccccccccEEEEEEEccccccccccccEEEEEEEEEEccEEcccccEEEEcccEEEEEccccccccEEEcccHHHHHHcccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHccccEEEEEHHHHccccccccccccccHHHccHHHHHHHHHHHHHHHHHEEccccccEEEEEEEEccccccEccccEEEEEEEEEccccccccccEEEEEEEEccccEEcccccEEcccccEEEEEcccccEccccEcccEccHHHHcccHHHHHHccccc
Coil and Loop (DISEMBL)
MAASLASKWSRVILVGRSllgglgnnlsglsstshemasgnflsQQRTFIQMRTVLKVvdnsgaktvmciqplkgrkvarlGDTIVASVKeamptgkvkkgQVVHAVVVRAAMQhgrfdgsevrfddnAVVLVNkageptgtrvfgpvphelrrkKHVSILTLAEHLA
Flexible Loop (DISEMBL)
maaslaskwsRVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQRTFIQMRTVLKVVdnsgaktvmciqplkgrkvarlGDTIVASvkeamptgkvkkgqvVHAVVVRAAMQhgrfdgsevrfdDNAVVLvnkageptgtrvfgpvphelrrkkhvsiltlaehla
Low Complexity Region (SEG)
MAASLASKWSRVILVgrsllgglgnnlsglsstsHEMASGNFLSQQRTFIQMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGkvkkgqvvhavvvraaMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA
Disordered region (IsUnstruct)
*******KWSRVILVGRSLLGGLGNNL**************FLSQQRTFIQMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHEL****HVSIL*******
Disordered Region (DISOPRED)
********WSR**LVGRSLLGGLGNNLSGLSST*HEMA**NFLSQQRTFIQMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA
Disordered Region (DISEMBL)
********WSRVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQRTFIQMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA
Disordered Region (DISPRO)
******SKWSRVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQRTFIQMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAASLASKWSRVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQRTFIQMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q9A8U3	122	50S ribosomal protein L14	yes	no	0.708	0.975	0.586	5e-33
B8H4E4	122	50S ribosomal protein L14	yes	no	0.708	0.975	0.586	5e-33
B6JEU3	122	50S ribosomal protein L14	yes	no	0.708	0.975	0.603	6e-33
B2IK72	122	50S ribosomal protein L14	yes	no	0.708	0.975	0.595	6e-33
A1ALV1	122	50S ribosomal protein L14	yes	no	0.708	0.975	0.578	7e-33
Q39XZ6	122	50S ribosomal protein L14	yes	no	0.708	0.975	0.561	7e-33
B0T2D2	122	50S ribosomal protein L14	yes	no	0.708	0.975	0.586	8e-33
Q1QN20	122	50S ribosomal protein L14	yes	no	0.708	0.975	0.586	9e-33
A8IAQ6	122	50S ribosomal protein L14	no	no	0.708	0.975	0.595	1e-32
Q1RHN1	122	50S ribosomal protein L14	yes	no	0.708	0.975	0.586	1e-32

>sp|Q9A8U3|RL14_CAUCR 50S ribosomal protein L14 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=rplN PE=3 SV=1

 Score =  140 bits (352), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 87/121 (71%), Gaps = 2/121 (1%)

Query: 49  FIQMRTVLKVVDNSGAKTVMCIQPL--KGRKVARLGDTIVASVKEAMPTGKVKKGQVVHA 106
            IQM+T L+V DNSGA+ VMCI+ L   GR+ A +GD IV SVKEA+P G+VKKG V+ A
Sbjct: 1   MIQMQTNLEVADNSGARRVMCIKVLGGAGRRYASVGDVIVVSVKEAIPRGRVKKGDVLRA 60

Query: 107 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 166
           VVVR      R DGS +RFD NA V+VNK  EP GTR+FGPVP ELR K H+ I++LA  
Sbjct: 61  VVVRVNQNLKRKDGSVIRFDKNAAVIVNKQSEPVGTRIFGPVPRELRAKNHMKIISLAPE 120

Query: 167 L 167
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.
Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)

>sp|B8H4E4|RL14_CAUCN 50S ribosomal protein L14 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rplN PE=3 SV=1

 Score =  140 bits (352), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 87/121 (71%), Gaps = 2/121 (1%)

Query: 49  FIQMRTVLKVVDNSGAKTVMCIQPL--KGRKVARLGDTIVASVKEAMPTGKVKKGQVVHA 106
            IQM+T L+V DNSGA+ VMCI+ L   GR+ A +GD IV SVKEA+P G+VKKG V+ A
Sbjct: 1   MIQMQTNLEVADNSGARRVMCIKVLGGAGRRYASVGDVIVVSVKEAIPRGRVKKGDVLRA 60

Query: 107 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 166
           VVVR      R DGS +RFD NA V+VNK  EP GTR+FGPVP ELR K H+ I++LA  
Sbjct: 61  VVVRVNQNLKRKDGSVIRFDKNAAVIVNKQSEPVGTRIFGPVPRELRAKNHMKIISLAPE 120

Query: 167 L 167
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Caulobacter crescentus (strain NA1000 / CB15N) (taxid: 565050)

>sp|B6JEU3|RL14_OLICO 50S ribosomal protein L14 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplN PE=3 SV=1

 Score =  140 bits (352), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 73/121 (60%), Positives = 86/121 (71%), Gaps = 2/121 (1%)

Query: 49  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHA 106
            IQM+T L V DNSGA+ VMCI+ L G  R+ A +GD IV SVKEA+P GKVKKG V+ A
Sbjct: 1   MIQMQTNLDVADNSGARRVMCIKVLGGSKRRYATVGDIIVVSVKEAIPRGKVKKGDVMKA 60

Query: 107 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 166
           VVVR A    R DGS +RFD NA VLVN   EP GTR+FGPVP ELR K H+ I++LA  
Sbjct: 61  VVVRVAKDIRRADGSVIRFDRNAAVLVNNQSEPVGTRIFGPVPRELRAKNHMKIISLAPE 120

Query: 167 L 167
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) (taxid: 504832)

>sp|B2IK72|RL14_BEII9 50S ribosomal protein L14 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplN PE=3 SV=1

 Score =  139 bits (351), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 86/121 (71%), Gaps = 2/121 (1%)

Query: 49  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHA 106
            IQM+T L V DNSGA+ VMCI+ L G  RK A +GD IV SVKEA+P G+VKKG V+ A
Sbjct: 1   MIQMQTNLDVADNSGARRVMCIKVLGGSKRKYAGVGDIIVVSVKEAIPRGRVKKGDVMKA 60

Query: 107 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 166
           VVVR A    R DGS +RFD NA VL+N   EP GTR+FGPVP ELR K H+ I++LA  
Sbjct: 61  VVVRTAKDIKRADGSVIRFDTNAAVLINNQSEPVGTRIFGPVPRELRAKNHMKIISLAPE 120

Query: 167 L 167
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) (taxid: 395963)

>sp|A1ALV1|RL14_PELPD 50S ribosomal protein L14 OS=Pelobacter propionicus (strain DSM 2379) GN=rplN PE=3 SV=1

 Score =  139 bits (351), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 70/121 (57%), Positives = 88/121 (72%), Gaps = 2/121 (1%)

Query: 49  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHA 106
            IQM+T+L V DNSGAK + CI+ L G  RK A +GD IVASV+EA+P  KVKKG VV A
Sbjct: 1   MIQMQTILDVADNSGAKKLFCIKVLGGSKRKYAGVGDIIVASVREALPNSKVKKGDVVKA 60

Query: 107 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 166
           V+VR A + GR DGS +RFDDN+ V++N   EP GTR+FGPV  ELR KK + I++LA  
Sbjct: 61  VIVRTAKELGRPDGSYIRFDDNSGVVINNQKEPVGTRIFGPVARELRAKKFMKIISLAPE 120

Query: 167 L 167
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Pelobacter propionicus (strain DSM 2379) (taxid: 338966)

>sp|Q39XZ6|RL14_GEOMG 50S ribosomal protein L14 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplN PE=3 SV=1

 Score =  139 bits (350), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 88/121 (72%), Gaps = 2/121 (1%)

Query: 49  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHA 106
            IQM+T+L V DNSGA+ + CI+ L G  RK A +GD IVASV+EA+P  KVKKG VV A
Sbjct: 1   MIQMQTILDVADNSGARKLFCIKVLGGSKRKYAGIGDIIVASVREAIPNSKVKKGDVVKA 60

Query: 107 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 166
           V+VR A + GR DGS +RFDDN+ V++N   EP GTR+FGPV  ELR +K + I++LA  
Sbjct: 61  VIVRTAKEVGRLDGSYIRFDDNSAVVINNQREPVGTRIFGPVARELRARKFMKIVSLAPE 120

Query: 167 L 167
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799)

>sp|B0T2D2|RL14_CAUSK 50S ribosomal protein L14 OS=Caulobacter sp. (strain K31) GN=rplN PE=3 SV=1

 Score =  139 bits (350), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 87/121 (71%), Gaps = 2/121 (1%)

Query: 49  FIQMRTVLKVVDNSGAKTVMCIQPL--KGRKVARLGDTIVASVKEAMPTGKVKKGQVVHA 106
            IQM+T L+V DNSGA+ VMCI+ L   GR+ A +GD IV SVKEA+P G+VKKG V+ A
Sbjct: 1   MIQMQTNLEVADNSGARRVMCIKVLGGAGRRYASVGDVIVVSVKEAIPRGRVKKGDVLRA 60

Query: 107 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 166
           VVVR      R DGS +RFD NA V+VNK  EP GTR+FGPVP ELR K H+ I++LA  
Sbjct: 61  VVVRVNQGMKRKDGSLIRFDKNAAVIVNKQSEPVGTRIFGPVPRELRAKNHMKIISLAPE 120

Query: 167 L 167
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Caulobacter sp. (strain K31) (taxid: 366602)

>sp|Q1QN20|RL14_NITHX 50S ribosomal protein L14 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rplN PE=3 SV=1

 Score =  139 bits (350), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 86/121 (71%), Gaps = 2/121 (1%)

Query: 49  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHA 106
            IQM+T L V DNSGA+ VMCI+ L G  R+ A +GD IV S+KEA+P GKVKKG V+ A
Sbjct: 1   MIQMQTNLDVADNSGARRVMCIKVLGGSKRRYATVGDIIVVSIKEAIPRGKVKKGDVMKA 60

Query: 107 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 166
           VVVR A    R DGS +RFD NA VL+N   EP GTR+FGPVP ELR K H+ I++LA  
Sbjct: 61  VVVRVAKDIRRADGSVIRFDRNAAVLINNQSEPVGTRIFGPVPRELRAKNHMKIISLAPE 120

Query: 167 L 167
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Nitrobacter hamburgensis (strain X14 / DSM 10229) (taxid: 323097)

>sp|A8IAQ6|RL14_AZOC5 50S ribosomal protein L14 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplN PE=3 SV=2

 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 86/121 (71%), Gaps = 2/121 (1%)

Query: 49  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHA 106
            IQM+T L V DNSGA+ VMCI+ L G  RK A +GD IV SVKEA+P G+VKKG V+ A
Sbjct: 1   MIQMQTNLDVADNSGARRVMCIKVLGGSKRKYAHVGDIIVVSVKEAIPRGRVKKGDVMKA 60

Query: 107 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 166
           VVVR A    R DGS +RFD NA VL+N   EP GTR+FGPVP ELR K H+ I++LA  
Sbjct: 61  VVVRTAKDIRRVDGSVIRFDRNAAVLINNNKEPVGTRIFGPVPRELRAKNHMKIISLAPE 120

Query: 167 L 167
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) (taxid: 438753)

>sp|Q1RHN1|RL14_RICBR 50S ribosomal protein L14 OS=Rickettsia bellii (strain RML369-C) GN=rplN PE=3 SV=1

 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 88/121 (72%), Gaps = 2/121 (1%)

Query: 49  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHA 106
            IQM+++L+V DNSGAK VMCI+ L G    VA+LGD IV S+KEA+P GKVKKG V   
Sbjct: 1   MIQMQSILEVADNSGAKKVMCIKVLGGSHHMVAKLGDVIVVSIKEAIPGGKVKKGDVYKG 60

Query: 107 VVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 166
           V+VR      R DGS ++FD NA+VL+NK  EP GTRVFGPV  ELR KK+V I++LAE 
Sbjct: 61  VIVRTKTGVVRADGSTIKFDKNALVLLNKQDEPIGTRVFGPVTRELRAKKYVRIMSLAEE 120

Query: 167 L 167
           +
Sbjct: 121 V 121

Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.

Rickettsia bellii (strain RML369-C) (taxid: 336407)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
297740749	166	unnamed protein product [Vitis vinifera]	0.982	0.993	0.745	2e-61
225443920	167	PREDICTED: 50S ribosomal protein L14-lik	0.982	0.988	0.741	2e-61
255570635	166	50S ribosomal protein L14, putative [Ric	0.982	0.993	0.775	2e-60
449490154	166	PREDICTED: 50S ribosomal protein L14-lik	0.982	0.993	0.775	3e-59
449441786	166	PREDICTED: 50S ribosomal protein L14-lik	0.982	0.993	0.769	2e-58
449433702	166	PREDICTED: 50S ribosomal protein L14-lik	0.982	0.993	0.775	3e-58
388499272	166	unknown [Medicago truncatula]	0.982	0.993	0.739	3e-56
224110578	166	predicted protein [Populus trichocarpa]	0.982	0.993	0.739	5e-56
30694900	172	large subunit ribosomal protein L14 [Ara	0.970	0.947	0.683	1e-55
357481043	166	50S ribosomal protein L14 [Medicago trun	0.982	0.993	0.733	1e-55

>gi|297740749|emb|CBI30931.3| unnamed protein product [Vitis vinifera]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/169 (74%), Positives = 139/169 (82%), Gaps = 4/169 (2%)

Query: 1   MAASLASKWSRVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQ-RTFIQMRTVLKVV 59
           MAA  AS+ S V   GRS+ GGLGN  SG   TS +    NFLSQQ RTFIQMRTVLKVV
Sbjct: 1   MAARFASRLSHV---GRSVFGGLGNISSGSLRTSLDSTWNNFLSQQQRTFIQMRTVLKVV 57

Query: 60  DNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFD 119
           DNSGAK VMCIQ LKG+K ARLGDTIVASVKEA P GKVKKG+VV+ VVVRAAMQ GR D
Sbjct: 58  DNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGEVVYGVVVRAAMQRGRCD 117

Query: 120 GSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 168
           GSEV+FDDNAVVL++K G+P GTRVFGPVPHELR+KKH+ ILTLAEH+A
Sbjct: 118 GSEVKFDDNAVVLLDKQGQPRGTRVFGPVPHELRKKKHLKILTLAEHIA 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443920|ref|XP_002278662.1| PREDICTED: 50S ribosomal protein L14-like [Vitis vinifera]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/170 (74%), Positives = 139/170 (81%), Gaps = 5/170 (2%)

Query: 1   MAASLASKWSRVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQ--RTFIQMRTVLKV 58
           MAA  AS+ S V   GRS+ GGLGN  SG   TS +    NFLSQQ  RTFIQMRTVLKV
Sbjct: 1   MAARFASRLSHV---GRSVFGGLGNISSGSLRTSLDSTWNNFLSQQQQRTFIQMRTVLKV 57

Query: 59  VDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRF 118
           VDNSGAK VMCIQ LKG+K ARLGDTIVASVKEA P GKVKKG+VV+ VVVRAAMQ GR 
Sbjct: 58  VDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGEVVYGVVVRAAMQRGRC 117

Query: 119 DGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 168
           DGSEV+FDDNAVVL++K G+P GTRVFGPVPHELR+KKH+ ILTLAEH+A
Sbjct: 118 DGSEVKFDDNAVVLLDKQGQPRGTRVFGPVPHELRKKKHLKILTLAEHIA 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570635|ref|XP_002526273.1| 50S ribosomal protein L14, putative [Ricinus communis] gi|223534404|gb|EEF36110.1| 50S ribosomal protein L14, putative [Ricinus communis]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 131/169 (77%), Positives = 147/169 (86%), Gaps = 4/169 (2%)

Query: 1   MAASLASKWSRVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQ-RTFIQMRTVLKVV 59
           MA+SL SK S    VGRS+LGGLG+NLSGL  TS++M S N++ QQ RTFIQMRTVLKVV
Sbjct: 1   MASSLVSKCS---CVGRSILGGLGSNLSGLMGTSNQMTSSNYMCQQLRTFIQMRTVLKVV 57

Query: 60  DNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFD 119
           DNSGAK VMCIQ LKG+K ARLGDTI+ASVKEAMP GKVKKG+VV+ VVVRAAMQ GR D
Sbjct: 58  DNSGAKKVMCIQALKGKKGARLGDTIIASVKEAMPNGKVKKGKVVYGVVVRAAMQRGRCD 117

Query: 120 GSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 168
           GSEV+FDDNAVVLV+K G+P GTRVFGPVPHELR+KKHV ILTLAEH+A
Sbjct: 118 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490154|ref|XP_004158523.1| PREDICTED: 50S ribosomal protein L14-like [Cucumis sativus]

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 131/169 (77%), Positives = 147/169 (86%), Gaps = 4/169 (2%)

Query: 1   MAASLASKWSRVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQ-RTFIQMRTVLKVV 59
           MA++ ASK+SRV   GRSLLGGLGNNLSG  +TS+E    +F++QQ RTFIQMRTVLKVV
Sbjct: 1   MASAFASKFSRV---GRSLLGGLGNNLSGSLTTSNETVCNSFITQQQRTFIQMRTVLKVV 57

Query: 60  DNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFD 119
           DNSGAK VMCIQ LKG+K ARLGDTIVASVKEA P GKVKKG+VV+ VVVRAAMQ GR D
Sbjct: 58  DNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCD 117

Query: 120 GSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 168
           GSEV+FDDNAVVLV+K G+P GTRVFGPVPHELR+KKHV ILTLAEH+A
Sbjct: 118 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441786|ref|XP_004138663.1| PREDICTED: 50S ribosomal protein L14-like [Cucumis sativus]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 130/169 (76%), Positives = 146/169 (86%), Gaps = 4/169 (2%)

Query: 1   MAASLASKWSRVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQ-RTFIQMRTVLKVV 59
           MA++ ASK+SRV   GRSLLGGLGNNLSG  +TS+E    +F++QQ RTFIQMRTVLKVV
Sbjct: 1   MASAFASKFSRV---GRSLLGGLGNNLSGSLTTSNETVCNSFITQQQRTFIQMRTVLKVV 57

Query: 60  DNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFD 119
           DNSGAK VMCIQ LKG+K ARLGDTIVASVKEA P GKVKKG+VV+ VVVRAAMQ  R D
Sbjct: 58  DNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKDRCD 117

Query: 120 GSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 168
           GSEV+FDDNAVVLV+K G+P GTRVFGPVPHELR+KKHV ILTLAEH+A
Sbjct: 118 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433702|ref|XP_004134636.1| PREDICTED: 50S ribosomal protein L14-like [Cucumis sativus] gi|449523537|ref|XP_004168780.1| PREDICTED: 50S ribosomal protein L14-like [Cucumis sativus]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 131/169 (77%), Positives = 144/169 (85%), Gaps = 4/169 (2%)

Query: 1   MAASLASKWSRVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQ-RTFIQMRTVLKVV 59
           MAA+ ASK+SRV    RSLLGGLGNNLS L + S E    +F+SQQ RTFIQMRTVLKVV
Sbjct: 1   MAAAFASKFSRV---SRSLLGGLGNNLSTLLTASKESICSSFISQQQRTFIQMRTVLKVV 57

Query: 60  DNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFD 119
           DNSGAK VMCIQ LKG+K ARLGDTIVASVKEA P GKVKKG+VV+ VVVRAAMQ GR D
Sbjct: 58  DNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCD 117

Query: 120 GSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 168
           GSEV+FDDNAVVLV+K G+P GTRVFGPVPHELR+KKHV ILTLAEH+A
Sbjct: 118 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRKKKHVKILTLAEHIA 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499272|gb|AFK37702.1| unknown [Medicago truncatula]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 125/169 (73%), Positives = 137/169 (81%), Gaps = 4/169 (2%)

Query: 1   MAASLASKWSRVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQ-RTFIQMRTVLKVV 59
           MAA+ AS+ SRV   GRSL GGL NN  GL +TSHEM   ++ SQQ RTFIQMRTVLKVV
Sbjct: 1   MAATFASRCSRV---GRSLFGGLSNNSPGLFTTSHEMTCNSYFSQQQRTFIQMRTVLKVV 57

Query: 60  DNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFD 119
           DNSGAK VMCI+ L G+K ARLGD I ASVKEA P GKVKKG VV AVVVRAAM  GR D
Sbjct: 58  DNSGAKKVMCIRALAGKKGARLGDMIQASVKEAHPNGKVKKGAVVFAVVVRAAMPKGRCD 117

Query: 120 GSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 168
           GSEV+FDDNAVVLV+K G+P GTRVFGPVPHELR+KKHV ILTLA H+A
Sbjct: 118 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA 166

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110578|ref|XP_002315564.1| predicted protein [Populus trichocarpa] gi|118484997|gb|ABK94363.1| unknown [Populus trichocarpa] gi|222864604|gb|EEF01735.1| predicted protein [Populus trichocarpa]

 Score =  222 bits (565), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 125/169 (73%), Positives = 136/169 (80%), Gaps = 4/169 (2%)

Query: 1   MAASLASKWSRVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQ-QRTFIQMRTVLKVV 59
           MAAS  SK SR      SL  GLG N+S L ST+  M   NFLSQ QRTFIQMRTVLKVV
Sbjct: 1   MAASFVSKCSRGDC---SLFRGLGTNVSNLLSTATRMTWSNFLSQHQRTFIQMRTVLKVV 57

Query: 60  DNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFD 119
           DNSGAK VMCIQPLKGRK ARLGDTI+ASVKEA P GKVKKG VV  VVVRAAMQ GR D
Sbjct: 58  DNSGAKKVMCIQPLKGRKGARLGDTIIASVKEAAPNGKVKKGAVVRGVVVRAAMQRGRCD 117

Query: 120 GSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 168
           GSEV+FDDNAVV+++K G+P G+RVFGPVPHELR+KKHV IL LAEH+A
Sbjct: 118 GSEVKFDDNAVVIIDKQGQPVGSRVFGPVPHELRKKKHVKILALAEHIA 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694900|ref|NP_199428.3| large subunit ribosomal protein L14 [Arabidopsis thaliana] gi|332007965|gb|AED95348.1| large subunit ribosomal protein L14 [Arabidopsis thaliana]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/177 (68%), Positives = 137/177 (77%), Gaps = 14/177 (7%)

Query: 1   MAASLASKWSRVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQ--RTFIQMRTVLKV 58
           MAA+ AS+ +R    GRSLLGGL N   G  ++S+ M + + LSQQ  RTFIQM TVLKV
Sbjct: 1   MAAAFASRLTRG---GRSLLGGLNN--GGSMNSSNGMMNESILSQQQRRTFIQMGTVLKV 55

Query: 59  VDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRF 118
           VDNSGAK VMCIQ LKG+K ARLGDTIVASVKEAMP GKVKKG VV+ VVVRAAMQ GR 
Sbjct: 56  VDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRV 115

Query: 119 DGSEVRFDDNAVVLVNKAG-------EPTGTRVFGPVPHELRRKKHVSILTLAEHLA 168
           DGSEVRFDDNAVVLV+          +P GTRVFGPVPHELR+KKH+ IL LA+H+A
Sbjct: 116 DGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHELRKKKHLKILALAQHVA 172

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481043|ref|XP_003610807.1| 50S ribosomal protein L14 [Medicago truncatula] gi|357495181|ref|XP_003617879.1| 50S ribosomal protein L14 [Medicago truncatula] gi|355512142|gb|AES93765.1| 50S ribosomal protein L14 [Medicago truncatula] gi|355519214|gb|AET00838.1| 50S ribosomal protein L14 [Medicago truncatula] gi|388499684|gb|AFK37908.1| unknown [Medicago truncatula]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 124/169 (73%), Positives = 137/169 (81%), Gaps = 4/169 (2%)

Query: 1   MAASLASKWSRVILVGRSLLGGLGNNLSGLSSTSHEMASGNFLSQQ-RTFIQMRTVLKVV 59
           MAA+ AS+ SRV   GRSL GGL N+  GL +TSHEM   ++ SQQ RTFIQMRTVLKVV
Sbjct: 1   MAATFASRCSRV---GRSLFGGLSNSSPGLFTTSHEMTCNSYFSQQQRTFIQMRTVLKVV 57

Query: 60  DNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFD 119
           DNSGAK VMCI+ L G+K ARLGD I ASVKEA P GKVKKG VV AVVVRAAM  GR D
Sbjct: 58  DNSGAKKVMCIRALAGKKGARLGDMIQASVKEAHPNGKVKKGAVVFAVVVRAAMPKGRCD 117

Query: 120 GSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA 168
           GSEV+FDDNAVVLV+K G+P GTRVFGPVPHELR+KKHV ILTLA H+A
Sbjct: 118 GSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA 166

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2161368	173	AT5G46160 [Arabidopsis thalian	0.785	0.763	0.640	2.1e-38
TAIR|locus:2007913	196	HLL "HUELLENLOS" [Arabidopsis	0.577	0.494	0.513	5.3e-30
TIGR_CMR|GSU_2847	122	GSU_2847 "ribosomal protein L1	0.684	0.942	0.478	1.6e-22
TIGR_CMR|SPO_0495	122	SPO_0495 "ribosomal protein L1	0.684	0.942	0.478	1.5e-21
TIGR_CMR|DET_0484	122	DET_0484 "ribosomal protein L1	0.684	0.942	0.461	6.3e-21
TIGR_CMR|CPS_0611	122	CPS_0611 "ribosomal protein L1	0.684	0.942	0.461	1.3e-20
UNIPROTKB|P66069	122	rplN "50S ribosomal protein L1	0.684	0.942	0.427	1.7e-20
UNIPROTKB|Q9KNZ4	123	rplN "50S ribosomal protein L1	0.684	0.934	0.466	9.2e-20
TIGR_CMR|VC_2586	123	VC_2586 "ribosomal protein L14	0.684	0.934	0.466	9.2e-20
TIGR_CMR|CBU_0248	122	CBU_0248 "ribosomal protein L1	0.684	0.942	0.452	1.9e-19

TAIR|locus:2161368 AT5G46160 [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 91/142 (64%), Positives = 100/142 (70%)

Query:    37 MASGNFLSQQ---RTFIQMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEAM 93
             M + + LSQQ   RTFIQM TVLKVVDNSGAK VMCIQ LKG+K ARLGDTIVASVKEAM
Sbjct:    32 MMNESILSQQQQRRTFIQMGTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIVASVKEAM 91

Query:    94 PTGXXXXXXXXXXXXXXXXMQHGRFDGSEVRFDDNAVVLVNKAG-------EPTGTRVFG 146
             P G                MQ GR DGSEVRFDDNAVVLV+          +P GTRVFG
Sbjct:    92 PNGKVKKGAVVYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFG 151

Query:   147 PVPHELRRKKHVSILTLAEHLA 168
             PVPHELR+KKH+ IL LA+H+A
Sbjct:   152 PVPHELRKKKHLKILALAQHVA 173

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2007913 HLL "HUELLENLOS" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
 Identities = 57/111 (51%), Positives = 67/111 (60%)

Query:    37 MASGNFLSQQ--RTFIQMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDTIVASVKEA-- 92
             M +G+ LSQQ  RTFIQM T+LK VDNS AK VMCIQ L+G+K ARLGD IV SVKEA  
Sbjct:    34 MMNGSILSQQQHRTFIQMGTILKCVDNSCAKEVMCIQSLRGKKGARLGDIIVGSVKEANP 93

Query:    93 ----------MPTGXXXXXXXXXXXXXXXXMQHGRFDGSEVRFDDNAVVLV 133
                       +P G                M  GR DGS+V+FDDNA+V+V
Sbjct:    94 IVQKKVKKDAIPKGKVKKGMVVYGVVVRAAMPKGRADGSQVKFDDNAIVVV 144

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA

TIGR_CMR|GSU_2847 GSU_2847 "ribosomal protein L14" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 56/117 (47%), Positives = 73/117 (62%)

Query:    50 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXXX 107
             IQM+TVL V DNSGAK + CI+ L G  RK A +GD +V SV+EA+P             
Sbjct:     2 IQMQTVLDVADNSGAKKLFCIKVLGGSKRKYAGVGDIVVCSVREAVPNAKVKKGDVVKVV 61

Query:   108 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
                   + GR DGS +RFDDN+ V++N   EP GTR+FGPV  ELR +K + I++LA
Sbjct:    62 IVRTAKEIGRPDGSYIRFDDNSGVVINNQREPVGTRIFGPVARELRAQKFMKIISLA 118

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|SPO_0495 SPO_0495 "ribosomal protein L14" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 56/117 (47%), Positives = 70/117 (59%)

Query:    50 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXXX 107
             IQM+T L V DNSGA+ V CI+ L G  RK A +GD IV SVKEA+P G           
Sbjct:     2 IQMQTNLDVADNSGARRVQCIKVLGGSKRKYASVGDIIVVSVKEAIPRGRVKKGDVRKAV 61

Query:   108 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
                   +  R DG+ +RFD NA V++N   EP GTR+FGPV  ELR K  + I++LA
Sbjct:    62 VVRTAKEVRREDGTAIRFDRNAAVILNNNNEPVGTRIFGPVVRELRAKNFMKIISLA 118

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|DET_0484 DET_0484 "ribosomal protein L14" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 54/117 (46%), Positives = 70/117 (59%)

Query:    50 IQMRTVLKVVDNSGAKTVMCIQPLKG-RKV-ARLGDTIVASVKEAMPTGXXXXXXXXXXX 107
             +Q  T L V DN+GAK +MCI  L G RK+ A++GD IVA+VK++ P             
Sbjct:     2 VQQYTRLNVADNTGAKKIMCINVLGGSRKLQAKVGDVIVAAVKKSSPDAQAKSGTVVKAV 61

Query:   108 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
                    + R DGS ++FDDNA V++N   EP GTR+FGPV  ELR KK   IL+LA
Sbjct:    62 VVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRDKKFTKILSLA 118

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|CPS_0611 CPS_0611 "ribosomal protein L14" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 54/117 (46%), Positives = 70/117 (59%)

Query:    50 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXXX 107
             IQM++ L V DNSGAK V CI+ L G  R+ AR+GD I  +VKEA P G           
Sbjct:     2 IQMQSQLNVADNSGAKRVQCIKVLGGSHRRYARIGDIIKVAVKEASPRGKVKKGDVHTAV 61

Query:   108 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
                      R DGS +RFD+NA V++N   +P GTR+FGPV  ELR +K + I++LA
Sbjct:    62 VVRTKKGVRRTDGSAIRFDENAAVMLNANLQPIGTRIFGPVTRELRNEKFMKIVSLA 118

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

UNIPROTKB|P66069 rplN "50S ribosomal protein L14" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 50/117 (42%), Positives = 72/117 (61%)

Query:    50 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXXX 107
             IQ  + LKV DN+GAK ++CI+ L G  R+ A +GD IVA+VK+A+P G           
Sbjct:     2 IQQESRLKVADNTGAKEILCIRVLGGSSRRYAGIGDVIVATVKDAIPGGNVKRGDVVKAV 61

Query:   108 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
                   +  R DGS ++FD+NA V++    +P GTR+FGPV  ELR K+ + I++LA
Sbjct:    62 VVRTVKERRRPDGSYIKFDENAAVIIKPDNDPRGTRIFGPVGRELREKRFMKIISLA 118

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

UNIPROTKB|Q9KNZ4 rplN "50S ribosomal protein L14" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 55/118 (46%), Positives = 70/118 (59%)

Query:    50 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXXX 107
             IQM+T+L   DNSGA++VMCI+ L G  R+ A +GD I  +VKEA+P G           
Sbjct:     2 IQMQTMLDAADNSGARSVMCIKVLGGSHRRYAHVGDIIKVTVKEAIPRGKVKKGDVLKAV 61

Query:   108 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLA 164
                      R DGS +RFD NA VL+N   E P GTR+FGPV  ELR  K + I++LA
Sbjct:    62 VVRTRKGVRRPDGSVIRFDRNACVLLNNNSEQPIGTRIFGPVTRELRNAKFMKIVSLA 119

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_2586 VC_2586 "ribosomal protein L14" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 55/118 (46%), Positives = 70/118 (59%)

Query:    50 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXXX 107
             IQM+T+L   DNSGA++VMCI+ L G  R+ A +GD I  +VKEA+P G           
Sbjct:     2 IQMQTMLDAADNSGARSVMCIKVLGGSHRRYAHVGDIIKVTVKEAIPRGKVKKGDVLKAV 61

Query:   108 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLA 164
                      R DGS +RFD NA VL+N   E P GTR+FGPV  ELR  K + I++LA
Sbjct:    62 VVRTRKGVRRPDGSVIRFDRNACVLLNNNSEQPIGTRIFGPVTRELRNAKFMKIVSLA 119

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CBU_0248 CBU_0248 "ribosomal protein L14" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 53/117 (45%), Positives = 70/117 (59%)

Query:    50 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXXX 107
             IQ ++++ V DNSGA+ VMCI+ L G  R+ A +GD I  S+KEA+P G           
Sbjct:     2 IQTQSIVDVADNSGARRVMCIKVLGGSKRRYANIGDVIKVSIKEAIPRGKVKKGDVMHAV 61

Query:   108 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
                      R DGS +RFD+NAVVL+N   +  GTRVFGPV  ELR  K + I++LA
Sbjct:    62 VVRTRKGVRRNDGSLIRFDNNAVVLLNNQLQLVGTRVFGPVVRELRTDKFMKIISLA 118

GO:0003735 "structural constituent of ribosome" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B8G6R5	RL14_CHLAD	No assigned EC number	0.5702	0.7083	0.9754	yes	no
B4R8M7	RL14_PHEZH	No assigned EC number	0.5785	0.7083	0.9754	yes	no
Q3SSV6	RL14_NITWN	No assigned EC number	0.5785	0.7083	0.9754	yes	no
B3E7U5	RL14_GEOLS	No assigned EC number	0.5619	0.7083	0.9754	yes	no
Q1QN20	RL14_NITHX	No assigned EC number	0.5867	0.7083	0.9754	yes	no
Q8UE28	RL14_AGRT5	No assigned EC number	0.5785	0.7083	0.9754	yes	no
Q8G083	RL14_BRUSU	No assigned EC number	0.5702	0.7083	0.9754	yes	no
B3PWT1	RL14_RHIE6	No assigned EC number	0.5785	0.7083	0.9754	yes	no
Q9A8U3	RL14_CAUCR	No assigned EC number	0.5867	0.7083	0.9754	yes	no
B5ZYU5	RL14_RHILW	No assigned EC number	0.5785	0.7083	0.9754	yes	no
B5EFR0	RL14_GEOBB	No assigned EC number	0.5867	0.7083	0.9754	yes	no
Q4UMR9	RL14_RICFE	No assigned EC number	0.5950	0.7083	0.9754	yes	no
B9M6G8	RL14_GEOSF	No assigned EC number	0.5867	0.7083	0.9754	yes	no
B8H4E4	RL14_CAUCN	No assigned EC number	0.5867	0.7083	0.9754	yes	no
Q98N47	RL14_RHILO	No assigned EC number	0.5867	0.7083	0.9754	yes	no
B6JEU3	RL14_OLICO	No assigned EC number	0.6033	0.7083	0.9754	yes	no
B9JVP7	RL14_AGRVS	No assigned EC number	0.5702	0.7083	0.9754	yes	no
A5VQZ6	RL14_BRUO2	No assigned EC number	0.5702	0.7083	0.9754	yes	no
A9W4T0	RL14_METEP	No assigned EC number	0.5867	0.7083	0.9754	yes	no
A8GVC4	RL14_RICB8	No assigned EC number	0.5867	0.7083	0.9754	yes	no
Q2K9K6	RL14_RHIEC	No assigned EC number	0.5785	0.7083	0.9754	yes	no
B1LWR6	RL14_METRJ	No assigned EC number	0.5867	0.7083	0.9754	yes	no
A6X0C8	RL14_OCHA4	No assigned EC number	0.5702	0.7083	0.9754	yes	no
A8EZK6	RL14_RICCK	No assigned EC number	0.5950	0.7083	0.9754	yes	no
C6E4P7	RL14_GEOSM	No assigned EC number	0.5867	0.7083	0.9754	yes	no
Q1RHN1	RL14_RICBR	No assigned EC number	0.5867	0.7083	0.9754	yes	no
Q1MID1	RL14_RHIL3	No assigned EC number	0.5785	0.7083	0.9754	yes	no
A5GAX4	RL14_GEOUR	No assigned EC number	0.5867	0.7083	0.9754	yes	no
B1Z783	RL14_METPB	No assigned EC number	0.5867	0.7083	0.9754	yes	no
B2S669	RL14_BRUA1	No assigned EC number	0.5702	0.7083	0.9754	yes	no
Q11HR2	RL14_MESSB	No assigned EC number	0.5950	0.7083	0.9754	yes	no
Q2YRA5	RL14_BRUA2	No assigned EC number	0.5702	0.7083	0.9754	yes	no
A8GPE0	RL14_RICAH	No assigned EC number	0.5867	0.7083	0.9754	yes	no
A1ALV1	RL14_PELPD	No assigned EC number	0.5785	0.7083	0.9754	yes	no
Q9ZCR5	RL14_RICPR	No assigned EC number	0.5785	0.7083	0.9754	yes	no
B9JDT8	RL14_AGRRK	No assigned EC number	0.5785	0.7083	0.9754	yes	no
Q89J94	RL14_BRAJA	No assigned EC number	0.5785	0.7083	0.9754	yes	no
Q92QG0	RL14_RHIME	No assigned EC number	0.5785	0.7083	0.9754	yes	no
C3MAZ0	RL14_RHISN	No assigned EC number	0.5785	0.7083	0.9754	yes	no
Q211F8	RL14_RHOPB	No assigned EC number	0.5785	0.7083	0.9754	yes	no
B0T2D2	RL14_CAUSK	No assigned EC number	0.5867	0.7083	0.9754	yes	no
Q8YHN0	RL14_BRUME	No assigned EC number	0.5702	0.7083	0.9754	yes	no
B0CH22	RL14_BRUSI	No assigned EC number	0.5702	0.7083	0.9754	yes	no
A6U869	RL14_SINMW	No assigned EC number	0.5785	0.7083	0.9754	yes	no
Q68W88	RL14_RICTY	No assigned EC number	0.5785	0.7083	0.9754	yes	no
B2IK72	RL14_BEII9	No assigned EC number	0.5950	0.7083	0.9754	yes	no
Q39XZ6	RL14_GEOMG	No assigned EC number	0.5619	0.7083	0.9754	yes	no
B8ELF3	RL14_METSB	No assigned EC number	0.5785	0.7083	0.9754	yes	no
Q57CR8	RL14_BRUAB	No assigned EC number	0.5702	0.7083	0.9754	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00028331001	SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (166 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00035271001	SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (140 aa)	•			•	•		•		0.992
	GSVIVG00026943001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (265 aa)	•		•	•	•		•		0.991
	GSVIVG00019749001	SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgu [...] (161 aa)	•			•	•		•		0.991
	GSVIVG00026031001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (117 aa)	•			•	•		•		0.989
	GSVIVG00023012001	SubName- Full=Chromosome chr6 scaffold_28, whole genome shotgun sequence; (213 aa)	•			•	•		•		0.986
	GSVIVG00011509001	SubName- Full=Chromosome chr10 scaffold_312, whole genome shotgun sequence; (129 aa)	•			•	•		•		0.985
	GSVIVG00023753001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (159 aa)	•			•	•		•		0.980
	rps8	RecName- Full=30S ribosomal protein S8, chloroplastic;; One of the primary rRNA binding protein [...] (134 aa)	•			•			•		0.979
	GSVIVG00003076001	SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (340 aa)	•		•	•			•		0.979
	GSVIVG00035173001	SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (116 aa)	•			•	•		•		0.978

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
pfam00238	122	pfam00238, Ribosomal_L14, Ribosomal protein L14p/L	5e-56
PRK05483	122	PRK05483, rplN, 50S ribosomal protein L14; Validat	8e-56
COG0093	122	COG0093, RplN, Ribosomal protein L14 [Translation,	1e-49
TIGR01067	122	TIGR01067, rplN_bact, ribosomal protein L14, bacte	3e-47
CHL00057	122	CHL00057, rpl14, ribosomal protein L14	3e-45
PRK08571	132	PRK08571, rpl14p, 50S ribosomal protein L14P; Revi	2e-22
TIGR03673	131	TIGR03673, rpl14p_arch, 50S ribosomal protein L14P	1e-21
PTZ00054	139	PTZ00054, PTZ00054, 60S ribosomal protein L23; Pro	3e-12

>gnl|CDD|201105 pfam00238, Ribosomal_L14, Ribosomal protein L14p/L23e

 Score =  171 bits (436), Expect = 5e-56
 Identities = 72/117 (61%), Positives = 85/117 (72%), Gaps = 2/117 (1%)

Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
           IQ+ T L V DNSGAK V CI+ L G  +K A++GD IV SVK+A+P GKVKKG VV AV
Sbjct: 2   IQVGTRLNVADNSGAKKVKCIKVLGGSRKKYAKVGDIIVVSVKKAIPKGKVKKGDVVKAV 61

Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
           +VR   +  R DGS +RFDDNAVVL+N  GEP GTR+FGPV  ELR KK   IL+LA
Sbjct: 62  IVRTKKEVRRKDGSYIRFDDNAVVLINNKGEPKGTRIFGPVARELRAKKFPKILSLA 118

Length = 122

>gnl|CDD|180117 PRK05483, rplN, 50S ribosomal protein L14; Validated

 Score =  171 bits (435), Expect = 8e-56
 Identities = 73/117 (62%), Positives = 83/117 (70%), Gaps = 2/117 (1%)

Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
           IQ  T L V DNSGAK VMCI+ L G  R+ A +GD IV SVKEA+P GKVKKG VV AV
Sbjct: 2   IQQETRLNVADNSGAKEVMCIKVLGGSKRRYASIGDVIVVSVKEAIPRGKVKKGDVVKAV 61

Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
           VVR      R DGS +RFDDNA VL+N  GEP GTR+FGPV  ELR KK + I++LA
Sbjct: 62  VVRTKKGVRRPDGSYIRFDDNAAVLLNNDGEPRGTRIFGPVARELRDKKFMKIVSLA 118

Length = 122

>gnl|CDD|223171 COG0093, RplN, Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

 Score =  155 bits (394), Expect = 1e-49
 Identities = 67/117 (57%), Positives = 83/117 (70%), Gaps = 2/117 (1%)

Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
           IQ++T L V DNSGAK VMCI+ L G  R+ A +GD IV SVK+A+P G VKKG VV AV
Sbjct: 2   IQVQTRLNVADNSGAKEVMCIKVLGGSRRRYAGVGDIIVVSVKKAIPRGMVKKGDVVKAV 61

Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
           VVR   +  R DGS ++FDDNA V++N  GEP GTR+FGPV  ELR +  + I +LA
Sbjct: 62  VVRTKKEVRRPDGSYIKFDDNAAVIINPDGEPRGTRIFGPVARELRERGFMKIASLA 118

Length = 122

>gnl|CDD|130139 TIGR01067, rplN_bact, ribosomal protein L14, bacterial/organelle

 Score =  149 bits (378), Expect = 3e-47
 Identities = 67/118 (56%), Positives = 81/118 (68%), Gaps = 2/118 (1%)

Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
           IQ ++ L V DNSGAK V CI+ L G  R+ A +GD IV  VK+A+P GKVKKG VV AV
Sbjct: 2   IQQQSRLNVADNSGAKKVQCIKVLGGSRRRYATVGDVIVVVVKDAIPNGKVKKGDVVKAV 61

Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAE 165
           +VR      R DGS +RFDDNA VL+NK  EP GTR+FGPV  ELR K  + I++LA 
Sbjct: 62  IVRTKKGVRRKDGSYIRFDDNACVLINKNKEPRGTRIFGPVARELRDKGFMKIVSLAP 119

This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 122

>gnl|CDD|176997 CHL00057, rpl14, ribosomal protein L14

 Score =  144 bits (366), Expect = 3e-45
 Identities = 58/117 (49%), Positives = 79/117 (67%), Gaps = 2/117 (1%)

Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
           IQ +T L V DNSGA+ +MCI+ L    RK A +GD I+A VKEA+P   +K+ +VV AV
Sbjct: 2   IQPQTYLNVADNSGARKLMCIRVLGASNRKYAHIGDVIIAVVKEAVPNMPLKRSEVVRAV 61

Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
           +VR   +  R +G  +RFDDNA V++++ G P GTRVFGP+  ELR K    I++LA
Sbjct: 62  IVRTCKELKRDNGMIIRFDDNAAVVIDQEGNPKGTRVFGPIARELREKNFTKIVSLA 118

Length = 122

>gnl|CDD|181478 PRK08571, rpl14p, 50S ribosomal protein L14P; Reviewed

 Score = 86.5 bits (215), Expect = 2e-22
 Identities = 45/108 (41%), Positives = 62/108 (57%), Gaps = 9/108 (8%)

Query: 50  IQMRTVLKVVDNSGAKTVMCIQ--PLKGRK----VARLGDTIVASVKEAMPTGKVKKGQV 103
           + +   L   DN+GAK V  I     KG K     A +GD +V SVK+  P  +++K QV
Sbjct: 12  LPVGARLVCADNTGAKEVEIISVKGYKGVKRRLPKAGVGDMVVVSVKKGTP--EMRK-QV 68

Query: 104 VHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 151
           + AVVVR   ++ R DG+ V+F+DNA V+V   G P GT + GPV  E
Sbjct: 69  LRAVVVRQRKEYRRPDGTRVKFEDNAAVIVTPEGTPKGTEIKGPVARE 116

Length = 132

>gnl|CDD|132712 TIGR03673, rpl14p_arch, 50S ribosomal protein L14P

 Score = 84.3 bits (209), Expect = 1e-21
 Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 9/108 (8%)

Query: 50  IQMRTVLKVVDNSGAKTVMCI--QPLKGRK----VARLGDTIVASVKEAMPTGKVKKGQV 103
           + +  +L   DN+GAK V  I  +  KG K     A +GD +V SVK+  P     + QV
Sbjct: 11  LPVGALLVCADNTGAKEVEVISVKGYKGVKRRLPCAGVGDMVVVSVKKGTPE---MRKQV 67

Query: 104 VHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 151
             AVVVR   ++ R DG+ V+F+DNAVV+V   GEP GT + GPV  E
Sbjct: 68  FKAVVVRQRKEYRRPDGTRVKFEDNAVVIVTPDGEPKGTEIKGPVARE 115

Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges. Length = 131

>gnl|CDD|185418 PTZ00054, PTZ00054, 60S ribosomal protein L23; Provisional

 Score = 60.1 bits (146), Expect = 3e-12
 Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 9/103 (8%)

Query: 55  VLKVVDNSGAKT--VMCIQPLKGR----KVARLGDTIVASVKEAMPTGKVKKGQVVHAVV 108
           V+   DNSGAK   ++ ++ + GR      A LGD ++A+VK+  P  + K   V++AV+
Sbjct: 24  VVNCADNSGAKNLYIIAVKGIHGRLNRLPSASLGDMVLATVKKGKPELRKK---VLNAVI 80

Query: 109 VRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 151
           +R      R DG  + F+DNA V+VN  GE  G+ + GPV  E
Sbjct: 81  IRQRKAWRRKDGVFIYFEDNAGVIVNPKGEMKGSAITGPVAKE 123

Length = 139

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
COG0093	122	RplN Ribosomal protein L14 [Translation, ribosomal	100.0
CHL00057	122	rpl14 ribosomal protein L14	100.0
PRK05483	122	rplN 50S ribosomal protein L14; Validated	100.0
TIGR01067	122	rplN_bact ribosomal protein L14, bacterial/organel	100.0
PTZ00054	139	60S ribosomal protein L23; Provisional	100.0
PF00238	122	Ribosomal_L14: Ribosomal protein L14p/L23e; InterP	100.0
TIGR03673	131	rpl14p_arch 50S ribosomal protein L14P. Part of th	100.0
PRK08571	132	rpl14p 50S ribosomal protein L14P; Reviewed	100.0
PTZ00320	188	ribosomal protein L14; Provisional	100.0
KOG0901	145	consensus 60S ribosomal protein L14/L17/L23 [Trans	100.0
KOG3441	149	consensus Mitochondrial ribosomal protein L14 [Tra	99.89

>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2e-53  Score=326.60  Aligned_cols=120  Identities=56%  Similarity=0.863  Sum_probs=117.4

Q ss_pred             ceeccceEEEeeCcccceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeec
Q 030970           49 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  126 (168)
Q Consensus        49 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFd  126 (168)
                      |||.+|+|+|+||||||+++||+++++  +++|.+||+|++|||++.|...+||||+++|||||||++++|+||++++||
T Consensus         1 miq~~t~l~vADNSGAk~v~~I~V~gg~~r~~A~vGD~ivvsVKka~P~~~vKkg~V~~AViVRtkk~~rR~DGs~i~Fd   80 (122)
T COG0093           1 MIQVQTRLNVADNSGAKEVMCIKVLGGSRRRYAGVGDIIVVSVKKAIPRGMVKKGDVVKAVVVRTKKEVRRPDGSYIKFD   80 (122)
T ss_pred             CcccccEEEEccCCCCcEEEEEEEeccccccccCCCCEEEEEEeeccCCcceeccceEEEEEEEeCCceEcCCCCEEEeC
Confidence            899999999999999999999999986  569999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970          127 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  168 (168)
Q Consensus       127 dNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~  168 (168)
                      |||+||+|++++|+||||||||++|||+++|+||+|||++++
T Consensus        81 dNA~Viin~~g~P~GtrI~GPVaRElr~~~~~kI~SlA~eVv  122 (122)
T COG0093          81 DNAAVIINPDGEPRGTRIFGPVARELRERGFMKIASLAPEVV  122 (122)
T ss_pred             CceEEEECCCCCcccceEecchhHHHHhcCCceeeecceecC
Confidence            999999999999999999999999999999999999999985

>CHL00057 rpl14 ribosomal protein L14

Probab=100.00  E-value=4.8e-52  Score=321.05  Aligned_cols=120  Identities=48%  Similarity=0.787  Sum_probs=117.0

Q ss_pred             ceeccceEEEeeCcccceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeec
Q 030970           49 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  126 (168)
Q Consensus        49 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFd  126 (168)
                      |||.+|+|+|+|||||++++||++|++  +++|++||+|+||||++.|++++||||+++|||||||++++|+||++++||
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~IvvsVk~~~~~~k~kkg~v~kAvIVrtk~~~~r~dG~~i~F~   80 (122)
T CHL00057          1 MIQPQTYLNVADNSGARKLMCIRVLGASNRKYAHIGDVIIAVVKEAVPNMPLKRSEVVRAVIVRTCKELKRDNGMIIRFD   80 (122)
T ss_pred             CCCcCCEEEEeECCCCcEEEEEEEeCCCCCccccCCCEEEEEEEeccCCCceecCCEEEEEEEEeccccCcCCCcEEEcC
Confidence            999999999999999999999999975  578999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970          127 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  168 (168)
Q Consensus       127 dNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~  168 (168)
                      |||+||+|++++|+||||+||||+|||+++|+||+|||++++
T Consensus        81 ~Na~VLin~~~~p~GTrI~Gpv~~elr~k~~~Ki~sla~~vi  122 (122)
T CHL00057         81 DNAAVVIDQEGNPKGTRVFGPIARELREKNFTKIVSLAPEVL  122 (122)
T ss_pred             CceEEEECCCCCEeEeEEEccchHHHhhcCCeEEEecccccC
Confidence            999999999999999999999999999999999999999875

>PRK05483 rplN 50S ribosomal protein L14; Validated

Probab=100.00  E-value=6.7e-52  Score=320.17  Aligned_cols=120  Identities=61%  Similarity=0.897  Sum_probs=116.8

Q ss_pred             ceeccceEEEeeCcccceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeec
Q 030970           49 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  126 (168)
Q Consensus        49 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFd  126 (168)
                      |||.+|+|+|+|||||++++||++|++  +++|++||+|+||||++.|+++++|||+++|||||||++++|+||++++||
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~g~~~~~~a~iGD~I~vsVkk~~~~~~~kkg~v~~AvIVrtkk~~~r~dG~~i~F~   80 (122)
T PRK05483          1 MIQQETRLNVADNSGAKEVMCIKVLGGSKRRYASIGDVIVVSVKEAIPRGKVKKGDVVKAVVVRTKKGVRRPDGSYIRFD   80 (122)
T ss_pred             CCCCCCEEEEeECCCCCEEEEEEEeCCCCCCccccCCEEEEEEEEcCCCCcccCCCEeeEEEEEeccceecCCCCEEEcC
Confidence            999999999999999999999999975  568999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970          127 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  168 (168)
Q Consensus       127 dNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~  168 (168)
                      |||+||+|++++|+||||+||||+|||+++|+||+|||++++
T Consensus        81 dNavVLin~~~~p~GTrI~Gpv~~elr~~~~~Ki~sla~~v~  122 (122)
T PRK05483         81 DNAAVLLNNDGEPRGTRIFGPVARELRDKKFMKIVSLAPEVL  122 (122)
T ss_pred             CCEEEEECCCCCEeEeEEeccchHHHhhcCCcEEEecccccC
Confidence            999999999999999999999999999999999999999875

>TIGR01067 rplN_bact ribosomal protein L14, bacterial/organelle

Probab=100.00  E-value=1e-51  Score=319.07  Aligned_cols=120  Identities=56%  Similarity=0.849  Sum_probs=116.9

Q ss_pred             ceeccceEEEeeCcccceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeec
Q 030970           49 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  126 (168)
Q Consensus        49 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFd  126 (168)
                      |||.+|+|+|+|||||++++||++|++  +++|++||+|+||||++.|+.+++|||+++|||||||++++|+||++++||
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~iGD~I~vsVk~~~~~~~~kkg~v~~AvIVrtkk~~~r~dG~~i~F~   80 (122)
T TIGR01067         1 MIQQQSRLNVADNSGAKKVQCIKVLGGSRRRYATVGDVIVVVVKDAIPNGKVKKGDVVKAVIVRTKKGVRRKDGSYIRFD   80 (122)
T ss_pred             CCCcCCEEEEeECCCCcEEEEEEEeCCCCCCccccCCEEEEEEEEcCCCCccccccEEEEEEEEeecceEeCCCCEEECC
Confidence            999999999999999999999999975  568999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970          127 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  168 (168)
Q Consensus       127 dNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~  168 (168)
                      |||+||+|++++|+||||+||||+|||+++|+||+|||++++
T Consensus        81 ~Na~VLin~~~~p~GTrI~Gpv~~elr~~~~~Ki~sla~~i~  122 (122)
T TIGR01067        81 DNACVLINKNKEPRGTRIFGPVARELRDKGFMKIVSLAPEVI  122 (122)
T ss_pred             CceEEEECCCCCEeeeEEEccchHHHhhcCCceeeeccchhC
Confidence            999999999999999999999999999999999999999885

This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms.

>PTZ00054 60S ribosomal protein L23; Provisional

Probab=100.00  E-value=1.3e-49  Score=313.46  Aligned_cols=117  Identities=33%  Similarity=0.455  Sum_probs=110.9

Q ss_pred             cceeccceEEEeeCcccceEEEEEeeC---C-c--cccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCc
Q 030970           48 TFIQMRTVLKVVDNSGAKTVMCIQPLK---G-R--KVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGS  121 (168)
Q Consensus        48 ~MIq~~T~L~VaDNSGak~v~cI~vl~---~-~--k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~  121 (168)
                      .|||.+|+|+|+|||||++++||++++   + +  ++|.+||+|+||||++.|   ++|||+++|||||||++++|+||+
T Consensus        17 ~mIq~~t~L~vaDNSGAk~v~cI~vlg~~g~~~r~~~a~iGD~IvvsVKk~~p---~~kg~V~kAVIVRtKk~~rR~dGs   93 (139)
T PTZ00054         17 LGLPVGAVVNCADNSGAKNLYIIAVKGIHGRLNRLPSASLGDMVLATVKKGKP---ELRKKVLNAVIIRQRKAWRRKDGV   93 (139)
T ss_pred             eeecCCCEEEEeeCCCccEEEEEEEeccCcCCccCcccccCCEEEEEEEECCC---cccCCEeeEEEEEECcceEcCCCc
Confidence            499999999999999999999999996   3 3  479999999999999999   678999999999999999999999


Q ss_pred             eEeecCceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970          122 EVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  168 (168)
Q Consensus       122 ~ikFddNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~  168 (168)
                      +++|||||+||+|++++|+|||||||||+|| +++|+||+|||++++
T Consensus        94 ~i~F~dNA~VLin~~~~p~GTRI~GpV~rEl-~~~~~KI~SLA~~vi  139 (139)
T PTZ00054         94 FIYFEDNAGVIVNPKGEMKGSAITGPVAKEC-ADLWPKISSAAPAIV  139 (139)
T ss_pred             EEEeCCcEEEEECCCCCEeeeEEeCchhHHH-HhCccHhhccccccC
Confidence            9999999999999999999999999999999 667999999999985

>PF00238 Ribosomal_L14: Ribosomal protein L14p/L23e; InterPro: IPR000218 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=5.3e-50  Score=308.96  Aligned_cols=120  Identities=60%  Similarity=0.879  Sum_probs=114.1

Q ss_pred             ceeccceEEEeeCcccceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeec
Q 030970           49 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  126 (168)
Q Consensus        49 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFd  126 (168)
                      |||.+|+|+|+|||||++++||+++++  +++|++||+|++|||+.+|+.++||||+++|||||||++++|.||++++||
T Consensus         1 MIq~~t~L~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVkk~~~~~~vkkg~v~~avIVrtk~~~~r~dg~~i~F~   80 (122)
T PF00238_consen    1 MIQKGTILKVADNSGAKKVKCIKVLGGKRRKYASVGDIIVVSVKKGRPKSKVKKGQVYKAVIVRTKKPIRRKDGSFIKFD   80 (122)
T ss_dssp             -BETTEEEEESBSSSEEEEEEEEETSSTTTSEE-TTSEEEEEEEEE-SSSSSTTTEEEEEEEEECSSEEETTTSEEEEES
T ss_pred             CCCCCCEEEEeeCCCCcEEEEEEEeCCcCccccccceEEEEEEeecccCccccccceEEEEEEEEeEEEEEeCCcEEEeC
Confidence            999999999999999999999999975  678999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970          127 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  168 (168)
Q Consensus       127 dNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~  168 (168)
                      |||+||+|++++|+||||+||||+|+|+++|+||+|||++||
T Consensus        81 ~Na~VLln~~~~p~GtrI~Gpv~~elr~~~~~ki~sla~~iv  122 (122)
T PF00238_consen   81 DNAVVLLNKKGNPLGTRIFGPVPRELRKKKFPKILSLASRIV  122 (122)
T ss_dssp             SEEEEEEETTSSBSSSSBCSEEEHHHHHTTSHHHHHHSSCEE
T ss_pred             CccEEEEcCCCCEeeeEEEeeehHHhhHcCCchHHhhccccC
Confidence            999999999999999999999999999999999999999875

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L14 is one of the proteins from the large ribosomal subunit. In eubacteria, L14 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins, which have been grouped on the basis of sequence similarities []. Based on amino-acid sequence homology, it is predicted that ribosomal protein L14 is a member of a recently identified family of structurally related RNA-binding proteins []. L14 is a protein of 119 to 137 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZR_M 4A1C_J 4A1E_J 4A1A_J 4A17_J 1VSP_I 3D5D_O 1VSA_I 3MRZ_K 3F1F_O ....

>TIGR03673 rpl14p_arch 50S ribosomal protein L14P

Probab=100.00  E-value=1.6e-49  Score=310.23  Aligned_cols=117  Identities=39%  Similarity=0.568  Sum_probs=110.4

Q ss_pred             cceeccceEEEeeCcccceEEEEEeeC---C--c-cccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCc
Q 030970           48 TFIQMRTVLKVVDNSGAKTVMCIQPLK---G--R-KVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGS  121 (168)
Q Consensus        48 ~MIq~~T~L~VaDNSGak~v~cI~vl~---~--~-k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~  121 (168)
                      .|||.+|+|+|+|||||++++||++++   +  + ++|.+||+|+||||++.|   ++|||+++|||||||++++|+||+
T Consensus         9 ~mIq~~t~L~VaDNSGak~v~cI~vl~~~g~~~r~~~a~iGD~IvvsVK~~~p---~~kg~v~kAVIVRtkk~~~R~dGs   85 (131)
T TIGR03673         9 RALPVGSLLVCADNTGAKEVEVISVKGYKGVKRRLPCAGVGDMVVVSVKKGTP---EMRKQVFKAVVVRQRKEYRRPDGT   85 (131)
T ss_pred             eeeccCCEEEEeeCCCCceEEEEEEeeeCCCcccCCccccCCEEEEEEEECCc---cccCCEeEEEEEEeCcceecCCCc
Confidence            499999999999999999999999983   2  3 569999999999999999   578999999999999999999999


Q ss_pred             eEeecCceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970          122 EVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  168 (168)
Q Consensus       122 ~ikFddNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~  168 (168)
                      +++|||||+||+|++++|+|||||||||+|| +++|+||+|||++++
T Consensus        86 ~i~FddNa~VLin~~~~P~GTRI~GpV~rEl-~~~~~Ki~SlA~~vi  131 (131)
T TIGR03673        86 RVKFEDNAVVIVTPDGEPKGTEIKGPVAREA-AERWPKIASIASIIV  131 (131)
T ss_pred             EEEeCCcEEEEECCCCCEeeeEEEccchHHH-HhCccHheeccchhC
Confidence            9999999999999999999999999999999 568999999999985

Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges.

>PRK08571 rpl14p 50S ribosomal protein L14P; Reviewed

Probab=100.00  E-value=2.2e-49  Score=309.90  Aligned_cols=117  Identities=38%  Similarity=0.525  Sum_probs=110.3

Q ss_pred             cceeccceEEEeeCcccceEEEEEeeC---C-c--cccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCc
Q 030970           48 TFIQMRTVLKVVDNSGAKTVMCIQPLK---G-R--KVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGS  121 (168)
Q Consensus        48 ~MIq~~T~L~VaDNSGak~v~cI~vl~---~-~--k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~  121 (168)
                      .|||.+|+|+|+|||||++++||++++   + +  ++|.+||+|+|+||++.|   ++|||+++|||||||++++|+||+
T Consensus        10 ~mIq~~T~L~VaDNSGAk~v~cI~vlg~~g~~~r~~~a~iGD~IvvsVK~~~p---~~kg~v~kAVIVRtkk~~~R~dGs   86 (132)
T PRK08571         10 RGLPVGARLVCADNTGAKEVEIISVKGYKGVKRRLPKAGVGDMVVVSVKKGTP---EMRKQVLRAVVVRQRKEYRRPDGT   86 (132)
T ss_pred             ceecCCCEEEEeeCCCCCeEEEEEEeccCCCCccCCccccCCEEEEEEEECCC---cccCCEeEEEEEEeccceEcCCCc
Confidence            399999999999999999999999986   2 2  469999999999999999   578999999999999999999999


Q ss_pred             eEeecCceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970          122 EVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  168 (168)
Q Consensus       122 ~ikFddNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~  168 (168)
                      +++|||||+||+|++++|+||||+||||+|| +++|+||+|||++++
T Consensus        87 ~i~F~dNa~VLin~~~~p~GTRI~GpV~~El-~~~~~Ki~sLA~~vi  132 (132)
T PRK08571         87 RVKFEDNAAVIVTPEGTPKGTEIKGPVAREA-AERWPKIASIASIIV  132 (132)
T ss_pred             EEEeCCcEEEEECCCCCEeeeEEeccchHHH-hhCCchheeccchhC
Confidence            9999999999999999999999999999999 567999999999885

>PTZ00320 ribosomal protein L14; Provisional

Probab=100.00  E-value=4.6e-48  Score=315.03  Aligned_cols=118  Identities=25%  Similarity=0.330  Sum_probs=114.4

Q ss_pred             eccceEEEeeCcccceEEEEEeeCCccccccCcE----EEEEEeeecC------CCcccccceEEEEEEEeeeeeecCCC
Q 030970           51 QMRTVLKVVDNSGAKTVMCIQPLKGRKVARLGDT----IVASVKEAMP------TGKVKKGQVVHAVVVRAAMQHGRFDG  120 (168)
Q Consensus        51 q~~T~L~VaDNSGak~v~cI~vl~~~k~a~vGD~----I~vsVKk~~p------~~kvKKg~V~~AvIVRtkk~~~R~dG  120 (168)
                      .-+|+|+|+||||||+++||+++.++++|++||+    |+||||++.|      ++++|||||++|||||||++++|+||
T Consensus        61 ~~qT~L~VaDNSGAK~V~CIkVl~~rr~A~IGDi~~~~IvVsVKka~P~~~~~~~~kVKKG~V~kAVIVRTKK~irR~DG  140 (188)
T PTZ00320         61 SDQVKLHCVDNTNCKHVRLISKATAERFAHCRVFPAVAHRVSVQRFKSGRGEVSRHRVKPGNIYWVCLLSRRQTNTRMSG  140 (188)
T ss_pred             CCCcEEEEEeCCCCcEEEEEEEecCCCceeeccccCceEEEEEeecccCccccccCceecCCEEEEEEEEECcccCCCCC
Confidence            4689999999999999999999977899999999    9999999999      78999999999999999999999999


Q ss_pred             ceEeecCceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970          121 SEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  168 (168)
Q Consensus       121 ~~ikFddNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~  168 (168)
                      ++++||||||||+|++++|+||||||||++|||+++|+||+|||+.++
T Consensus       141 s~IrFDdNAaVLIN~qgePlGTRIfGPVaRELR~k~f~KIvSLAp~~~  188 (188)
T PTZ00320        141 LQTNFDRNTCILMNDQRVPLGTRVMYCAGRHVNHKYHLKAVVLANFFV  188 (188)
T ss_pred             CEEEeCCcEEEEECCCCCEeeeEEecchhHHHhhcCCceeeecccccC
Confidence            999999999999999999999999999999999999999999999875

>KOG0901 consensus 60S ribosomal protein L14/L17/L23 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.8e-36  Score=237.89  Aligned_cols=133  Identities=38%  Similarity=0.500  Sum_probs=121.9

Q ss_pred             cccccccccccc--ccceeccceEEEeeCcccceEEEEEeeC--C----ccccccCcEEEEEEee--ecCCCcccccceE
Q 030970           35 HEMASGNFLSQQ--RTFIQMRTVLKVVDNSGAKTVMCIQPLK--G----RKVARLGDTIVASVKE--AMPTGKVKKGQVV  104 (168)
Q Consensus        35 ~~~~~~~~~~~~--~~MIq~~T~L~VaDNSGak~v~cI~vl~--~----~k~a~vGD~I~vsVKk--~~p~~kvKKg~V~  104 (168)
                      .+++.++...+|  ..|||++|.++|+||||||.++||++.+  |    .+.|.+||+++++||+  ..|+.++|.|+++
T Consensus         3 ~~~~~gs~~~k~r~s~~~~~g~~incaDNSgAknL~~isv~g~~Grlnrl~~A~~GD~vva~vKka~~~Pe~r~k~g~~~   82 (145)
T KOG0901|consen    3 SRGRGGSSGVKFRISLGLPVGAVINCADNSGAKNLYCISVKGIKGRLNRLPAAGVGDMVVATVKKAHGKPELRKKVGEVL   82 (145)
T ss_pred             ccccCcccchhhhhhhccccceEEEecCCCCcceEEEEEEeccccccccccCCCcCCEEEEEEecccCCCccCcEecccc
Confidence            445555555555  5799999999999999999999999987  4    3589999999999999  7999999999999


Q ss_pred             EEEEEEeeeeeecCCCceEeecCceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970          105 HAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  168 (168)
Q Consensus       105 ~AvIVRtkk~~~R~dG~~ikFddNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~  168 (168)
                      +|+|||++++..|.||++++|+|||+|++|++++|.||+|+||||+|++. .|++|+|+|+.++
T Consensus        83 ~avvVr~~k~~~r~dgs~~~f~dnA~v~~~~~~e~~gs~i~G~v~~e~~~-~~~kias~A~~i~  145 (145)
T KOG0901|consen   83 PAVVVRQKKSKRRKDGSIAYFEDNAGVIVNNKGEPKGSAITGPVGKELAD-LWPKIASLAGLVV  145 (145)
T ss_pred             eeeEEeeccccccCCCcEEEEcCceEEEEcccCccccceeccccChhHhh-hhHHHHhhccccC
Confidence            99999999999999999999999999999999999999999999999999 7999999999874

>KOG3441 consensus Mitochondrial ribosomal protein L14 [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=3.3e-23  Score=161.73  Aligned_cols=107  Identities=38%  Similarity=0.613  Sum_probs=95.9

Q ss_pred             ceeccceEEEeeCccc--------ceEEEEEeeCCccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCC
Q 030970           49 FIQMRTVLKVVDNSGA--------KTVMCIQPLKGRKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDG  120 (168)
Q Consensus        49 MIq~~T~L~VaDNSGa--------k~v~cI~vl~~~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG  120 (168)
                      -|++.|+|+|+|||..        +..+||++|+++..+.+||.|+++||          ||..+|+||......++  |
T Consensus        31 ~I~k~tRlrVVDNSaLGk~a~~~gr~PrCIHVYkkrgvg~~GDkiLvAIk----------GQmkKa~vVGh~~~~k~--~   98 (149)
T KOG3441|consen   31 GIHKRTRLRVVDNSALGKEADTTGRLPRCIHVYKKRGVGELGDKILVAIK----------GQMKKAYVVGHVHYRKH--G   98 (149)
T ss_pred             hhhhhheEEEecchhhcccccccCCCCceEEEEecccccccccEEEEEEe----------cceeeeEEEEeeccCCC--C
Confidence            5999999999999973        67999999998889999999999997          89999999997665443  4


Q ss_pred             ceEeecCceEEEEcCCCCcceeEEecchhHhhhcC----CcchheccccccC
Q 030970          121 SEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRK----KHVSILTLAEHLA  168 (168)
Q Consensus       121 ~~ikFddNavVLln~k~~plGTRI~GpV~~Elr~k----k~~KI~SLA~~i~  168 (168)
                       .++||.|.+||+|++|+|+||||.-|||..||..    .|+|++++|+++|
T Consensus        99 -~P~fDsNniVLiddnGnPlGtRI~~PIPT~Lr~~~~~~~ysKVLAiA~~fv  149 (149)
T KOG3441|consen   99 -VPVFDSNNIVLIDDNGNPLGTRITAPIPTKLRANRGNVQYSKVLAIANKFV  149 (149)
T ss_pred             -CcccCCCcEEEECCCCCcccceEeccCcHHHHhccCCcchhhHHHHHhhcC
Confidence             5899999999999999999999999999999832    5999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
2j01_O	122	Structure Of The Thermus Thermophilus 70s Ribosome		1e-24
2hgj_N	122	Crystal Structure Of The 70s Thermus Thermophilus R		1e-24
3ofq_K	122	Crystal Structure Of The E. Coli Ribosome Bound To		4e-20
1p85_I	123	Real Space Refined Coordinates Of The 50s Subunit F		4e-20
2gya_I	122	Structure Of The 50s Subunit Of A Pre-Translocation		4e-20
2j28_K	121	Model Of E. Coli Srp Bound To 70s Rncs Length = 121		5e-20
2wwq_K	121	E.Coli 70s Ribosome Stalled During Translation Of T		5e-20
1nkw_I	134	Crystal Structure Of The Large Ribosomal Subunit Fr		5e-20
1pnu_I	132	Crystal Structure Of A Streptomycin Dependent Ribos		7e-20
1c04_D	122	Identification Of Known Protein And Rna Structures		2e-19
3bbo_M	121	Homology Model For The Spinach Chloroplast 50s Subu		2e-18
3j21_J	141	Promiscuous Behavior Of Proteins In Archaeal Riboso		4e-08
2zkr_k	140	Structure Of A Mammalian Ribosomal 60s Subunit With		3e-06
3zf7_W	139	High-resolution Cryo-electron Microscopy Structure		4e-06
4a17_J	141	T.Thermophila 60s Ribosomal Subunit In Complex With		4e-05
1ffk_H	132	Crystal Structure Of The Large Ribosomal Subunit Fr		8e-05
1s72_K	132	Refined Crystal Structure Of The Haloarcula Marismo		9e-05
3izr_M	140	Localization Of The Large Subunit Ribosomal Protein		2e-04
2x7n_C	132	Mechanism Of Eif6s Anti-Association Activity Length		2e-04
3jyw_R	131	Structure Of The 60s Proteins For Eukaryotic Riboso		2e-04
1s1i_R	137	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		2e-04

>pdb|2J01|O Chain O, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 122

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/121 (47%), Positives = 74/121 (61%), Gaps = 2/121 (1%)
Query: 49  FIQMRTVLKVVDNSGAKTVMCIQPLKGR--KVARLGDTIVASVKEAMPTGXXXXXXXXXX 106
            IQ +T L+V DN+GA+ +MCI+ LKG   K A +GD IVASVKEA+P G          
Sbjct: 1   MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKA 60
Query: 107 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 166
                  +  R DGS +RFDDNA V++N   EP GTRVFGPV  ELR K  + I++LA  
Sbjct: 61  VVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPE 120
Query: 167 L 167
           +
Sbjct: 121 V 121

>pdb|2HGJ|N Chain N, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. Length = 122

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/121 (47%), Positives = 74/121 (61%), Gaps = 2/121 (1%)
Query: 49  FIQMRTVLKVVDNSGAKTVMCIQPLKGR--KVARLGDTIVASVKEAMPTGXXXXXXXXXX 106
            IQ +T L+V DN+GA+ +MCI+ LKG   K A +GD IVASVKEA+P G          
Sbjct: 1   MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKA 60
Query: 107 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 166
                  +  R DGS +RFDDNA V++N   EP GTRVFGPV  ELR K  + I++LA  
Sbjct: 61  VVVRTKKEVKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPE 120
Query: 167 L 167
           +
Sbjct: 121 V 121

>pdb|3OFQ|K Chain K, Crystal Structure Of The E. Coli Ribosome Bound To Erythromycin. This File Contains The 50s Subunit Of The Second 70s Ribosome. Length = 122

Iteration: 1
 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 49  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXX 106
            IQ +T+L V DNSGA+ VMCI+ L G  R+ A +GD I  ++KEA+P G          
Sbjct: 1   MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKA 60
Query: 107 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLAE 165
                     R DGS +RFD NA VL+N   E P GTR+FGPV  ELR +K + I++LA 
Sbjct: 61  VVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAP 120
Query: 166 HL 167
            +
Sbjct: 121 EV 122

>pdb|1P85|I Chain I, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 123

Iteration: 1
 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 49  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXX 106
            IQ +T+L V DNSGA+ VMCI+ L G  R+ A +GD I  ++KEA+P G          
Sbjct: 1   MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKA 60
Query: 107 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLAE 165
                     R DGS +RFD NA VL+N   E P GTR+FGPV  ELR +K + I++LA 
Sbjct: 61  VVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAP 120
Query: 166 HL 167
            +
Sbjct: 121 EV 122

>pdb|2GYA|I Chain I, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 122

Iteration: 1
 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXXX 107
           IQ +T+L V DNSGA+ VMCI+ L G  R+ A +GD I  ++KEA+P G           
Sbjct: 1   IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAV 60
Query: 108 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLAEH 166
                    R DGS +RFD NA VL+N   E P GTR+FGPV  ELR +K + I++LA  
Sbjct: 61  VVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPE 120
Query: 167 L 167
           +
Sbjct: 121 V 121

>pdb|2J28|K Chain K, Model Of E. Coli Srp Bound To 70s Rncs Length = 121

Iteration: 1
 Score = 93.6 bits (231), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXXX 107
           IQ +T+L V DNSGA+ VMCI+ L G  R+ A +GD I  ++KEA+P G           
Sbjct: 1   IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAV 60
Query: 108 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLAEH 166
                    R DGS +RFD NA VL+N   E P GTR+FGPV  ELR +K + I++LA  
Sbjct: 61  VVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPE 120
Query: 167 L 167
           +
Sbjct: 121 V 121

>pdb|2WWQ|K Chain K, E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide. This File Contains The 50s, The P-Site Trna And The Tnac Leader Peptide (Part 2 Of 2) Length = 121

Iteration: 1
 Score = 93.6 bits (231), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/119 (45%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 49  FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGXXXXXXXXXX 106
            IQ +T+L V DNSGA+ VMCI+ L G  R+ A +GD I  ++KEA+P G          
Sbjct: 1   MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKA 60
Query: 107 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLA 164
                     R DGS +RFD NA VL+N   E P GTR+FGPV  ELR +K + I++LA
Sbjct: 61  VVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLA 119

>pdb|1NKW|I Chain I, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 134

Iteration: 1
 Score = 93.6 bits (231), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 67/126 (53%), Gaps = 14/126 (11%)
Query: 56  LKVVDNSGAKTVMCIQPLK--------------GRKVARLGDTIVASVKEAMPTGXXXXX 101
           L V DNSGA+ +MCI+ L                ++ A +GD IVASVK+A P G     
Sbjct: 8   LDVADNSGAREIMCIRVLNSGIGGKGLTTGGGGNKRYAHVGDIIVASVKDAAPRGAVKAG 67
Query: 102 XXXXXXXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSIL 161
                          R DGS +RFD NA V++N  GEP GTRVFGPV  ELR ++ + I+
Sbjct: 68  DVVKAVVVRTSHAIKRADGSTIRFDRNAAVIINNQGEPRGTRVFGPVARELRDRRFMKIV 127
Query: 162 TLAEHL 167
           +LA  +
Sbjct: 128 SLAPEV 133

>pdb|1PNU|I Chain I, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 132

Iteration: 1
 Score = 93.2 bits (230), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 67/126 (53%), Gaps = 14/126 (11%)
Query: 56  LKVVDNSGAKTVMCIQPLK--------------GRKVARLGDTIVASVKEAMPTGXXXXX 101
           L V DNSGA+ +MCI+ L                ++ A +GD IVASVK+A P G     
Sbjct: 7   LDVADNSGAREIMCIRVLNSGIGGKGLTTGGGGNKRYAHVGDIIVASVKDAAPRGAVKAG 66
Query: 102 XXXXXXXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSIL 161
                          R DGS +RFD NA V++N  GEP GTRVFGPV  ELR ++ + I+
Sbjct: 67  DVVKAVVVRTSHAIKRADGSTIRFDRNAAVIINNQGEPRGTRVFGPVARELRDRRFMKIV 126
Query: 162 TLAEHL 167
           +LA  +
Sbjct: 127 SLAPEV 132

>pdb|1C04|D Chain D, Identification Of Known Protein And Rna Structures In A 5 A Map Of The Large Ribosomal Subunit From Haloarcula Marismortui Length = 122

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 49  FIQMRTVLKVVDNSGAKTVMCIQPL--KGRKVARLGDTIVASVKEAMPTGXXXXXXXXXX 106
            IQ  + LKV DNSGA+ V+ I+ L   GR+ A +GD +VA+VK+A P G          
Sbjct: 1   MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKA 60
Query: 107 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 166
                     R DGS +RFD+NA V++     P GTR+FGPV  ELR K  + I++LA  
Sbjct: 61  VVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPE 120
Query: 167 L 167
           +
Sbjct: 121 V 121

>pdb|3BBO|M Chain M, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 121

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Query: 49  FIQMRTVLKVVDNSGAKTVMCIQPL--KGRKVARLGDTIVASVKEAMPTGXXXXXXXXXX 106
            IQ +T L V DNSGA+ +MCI+ +    R+ AR+GD IVA +KEA+P            
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60
Query: 107 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEH 166
                  +  R +G  +R+DDNA V++++ G P GTR+FG +  EL R+K   I++LA  
Sbjct: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIAREL-RQKFAKIVSLAPE 119
Query: 167 L 167
           +
Sbjct: 120 V 120

>pdb|3J21|J Chain J, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 141

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 56  LKVVDNSGAKTVMCIQPLKGRKVAR------LGDTIVASVKEAMPTGXXXXXXXXXXXXX 109
           L V DNSGAK +  I  ++     R      +GD +VA+VK+  P               
Sbjct: 27  LTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPD---MRHQVVRAVII 83
Query: 110 XXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 151
               ++ R DG  V+F+DNA V+V   G P GT + GPV  E
Sbjct: 84  RQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVARE 125

>pdb|2ZKR|KK Chain k, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 140

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 54  TVLKVVDNSGAKT--VMCIQPLKGR----KVARLGDTIVASVKEAMPTGXXXXXXXXXXX 107
            V+   DN+GAK   ++ ++ +KGR      A +GD ++A+VK+  P             
Sbjct: 24  AVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPE---LRKKVHPAV 80
Query: 108 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 151
                  + R DG  + F+DNA V+VN  GE  G+ + GPV  E
Sbjct: 81  VIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKE 124

>pdb|3ZF7|W Chain W, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 139

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 54  TVLKVVDNSGAKT--VMCIQPLKGR----KVARLGDTIVASVKEAMPTGXXXXXXXXXXX 107
            V+   DN+GAK   ++ ++   GR      A LGD ++ASVK+  P             
Sbjct: 23  AVVNCADNTGAKNLYIISVKGYHGRLNRLPAAALGDMVMASVKKGKPE---LRRKVLNAV 79
Query: 108 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 151
                    R DG+ + F+DNA V+VN  GE  G+ + GPV  E
Sbjct: 80  IIRQRKSWRRKDGTVIYFEDNAGVIVNPKGEMKGSGIAGPVAKE 123

>pdb|4A17|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 141

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 54  TVLKVVDNSGAK---TVMCIQPLKGR----KVARLGDTIVASVKEAMPTGXXXXXXXXXX 106
            V+   DNSGAK   T+ C   +KG       A +GD I+ SVK+  P            
Sbjct: 25  AVMNCADNSGAKNLYTIACFG-IKGHLSKLPSASIGDMILCSVKKGSPK---LRKKVLQA 80
Query: 107 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHEL 152
                     R DG  + F+DNA V+ N  GE  G+++ GPV  E 
Sbjct: 81  IVIRQRRPWRRRDGVFIYFEDNAGVIANPKGEMKGSQITGPVAKEC 126

>pdb|1FFK|H Chain H, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 132

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 54  TVLKVVDNSGAKT--VMCIQPLKGRK----VARLGDTIVASVKEAMPTGXXXXXXXXXXX 107
           +++   DN+GA+   V+ +    G K     A LGD I  SV +  P             
Sbjct: 16  SLITCADNTGARELKVISVHGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVVR 75
Query: 108 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHEL 152
                    R DG+ V+F+DNA V+V++  +P GT + GP+  E+
Sbjct: 76  QRKPIR---RPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREV 117

>pdb|1S72|K Chain K, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 132

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 54  TVLKVVDNSGAKT--VMCIQPLKGRK----VARLGDTIVASVKEAMPTGXXXXXXXXXXX 107
           +++   DN+GA+   V+ +    G K     A LGD I  SV +  P             
Sbjct: 16  SLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVR 75
Query: 108 XXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHEL 152
                    R DG+ V+F+DNA V+V++  +P GT + GP+  E+
Sbjct: 76  QRKPIR---RPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREV 117

>pdb|3IZR|M Chain M, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 140

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 56  LKVVDNSGAKT--VMCIQPLKGR----KVARLGDTIVASVKEAMPTGXXXXXXXXXXXXX 109
           +   DN+GAK   ++ ++ +KGR      A +GD ++A+VK+  P               
Sbjct: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIV 82
Query: 110 XXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHEL 152
                  R DG  + F+DNA V+VN  GE  G+ + GP+  E 
Sbjct: 83  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKEC 125

>pdb|2X7N|C Chain C, Mechanism Of Eif6s Anti-Association Activity Length = 132

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 54  TVLKVVDNSGAKTVMCIQPLKGR-------KVARLGDTIVASVKEAMPTGXXXXXXXXXX 106
            ++   DNSGA+ +  I  +KG          A LGD ++A+VK+  P            
Sbjct: 16  AIMNCADNSGARNLYIIA-VKGSGSRLNRLPAASLGDMVMATVKKGKPE---LRKKVMPA 71
Query: 107 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 151
                     R DG  + F+DNA V+ N  GE  G+ + GPV  E
Sbjct: 72  IVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKE 116

>pdb|3JYW|R Chain R, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 131

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 54  TVLKVVDNSGAKTVMCIQPLKGR-------KVARLGDTIVASVKEAMPTGXXXXXXXXXX 106
            ++   DNSGA+ +  I  +KG          A LGD ++A+VK+  P            
Sbjct: 15  AIMNCADNSGARNLYIIA-VKGSGSRLNRLPAASLGDMVMATVKKGKPE---LRKKVMPA 70
Query: 107 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 151
                     R DG  + F+DNA V+ N  GE  G+ + GPV  E
Sbjct: 71  IVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKE 115

>pdb|1S1I|R Chain R, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 137

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 54  TVLKVVDNSGAKTVMCIQPLKGR-------KVARLGDTIVASVKEAMPTGXXXXXXXXXX 106
            ++   DNSGA+ +  I  +KG          A LGD ++A+VK+  P            
Sbjct: 21  AIMNCADNSGARNLYIIA-VKGSGSRLNRLPAASLGDMVMATVKKGKPE---LRKKVMPA 76
Query: 107 XXXXXXMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHE 151
                     R DG  + F+DNA V+ N  GE  G+ + GPV  E
Sbjct: 77  IVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKE 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
3v2d_O	122	50S ribosomal protein L14; ribosome associated inh	2e-42
1whi_A	122	Ribosomal protein L14; rRNA-binding; 1.50A {Geobac	7e-41
3r8s_K	122	50S ribosomal protein L14; protein biosynthesis, R	4e-40
3bbo_M	121	Ribosomal protein L14; large ribosomal subunit, sp	3e-38
3u5e_V	137	L17A, YL32, 60S ribosomal protein L23-A; translati	9e-33
1vq8_K	132	50S ribosomal protein L14P; ribosome 50S, protein-	1e-31

>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ... Length = 122

 Score =  136 bits (344), Expect = 2e-42
 Identities = 68/120 (56%), Positives = 85/120 (70%), Gaps = 2/120 (1%)

Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
           IQ +T L+V DN+GA+ +MCI+ LKG   K A +GD IVASVKEA+P G VK+G VV AV
Sbjct: 2   IQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAV 61

Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHL 167
           VVR   +  R DGS +RFDDNA V++N   EP GTRVFGPV  ELR K  + I++LA  +
Sbjct: 62  VVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPEV 121

>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M Length = 122

 Score =  132 bits (334), Expect = 7e-41
 Identities = 62/117 (52%), Positives = 79/117 (67%), Gaps = 2/117 (1%)

Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
           IQ  + LKV DNSGA+ V+ I+ L G  R+ A +GD +VA+VK+A P G VKKGQVV AV
Sbjct: 2   IQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAV 61

Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
           VVR      R DGS +RFD+NA V++     P GTR+FGPV  ELR K  + I++LA
Sbjct: 62  VVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLA 118

>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* 2qao_K* ... Length = 122

 Score =  130 bits (329), Expect = 4e-40
 Identities = 65/120 (54%), Positives = 82/120 (68%), Gaps = 3/120 (2%)

Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
           IQ +T+L V DNSGA+ VMCI+ L G  R+ A +GD I  ++KEA+P GKVKKG V+ AV
Sbjct: 2   IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAV 61

Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLAEH 166
           VVR      R DGS +RFD NA VL+N   E P GTR+FGPV  ELR +K + I++LA  
Sbjct: 62  VVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPE 121

>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 121

 Score =  126 bits (317), Expect = 3e-38
 Identities = 53/117 (45%), Positives = 80/117 (68%), Gaps = 3/117 (2%)

Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
           IQ +T L V DNSGA+ +MCI+ +    R+ AR+GD IVA +KEA+P   +++ +V+ AV
Sbjct: 2   IQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAV 61

Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
           VVR   +  R +G  +R+DDNA V++++ G P GTR+FG +  EL R+K   I++LA
Sbjct: 62  VVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIAREL-RQKFAKIVSLA 117

>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J Length = 137

 Score =  112 bits (281), Expect = 9e-33
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 10/121 (8%)

Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKG------RKVARLGDTIVASVKEAMPTGKVKKGQV 103
           + +  ++   DNSGA+ +  I              A LGD ++A+VK+  P     + +V
Sbjct: 17  LPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPE---LRKKV 73

Query: 104 VHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTL 163
           + A+VVR A    R DG  + F+DNA V+ N  GE  G+ + GPV  E        + + 
Sbjct: 74  MPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKEC-ADLWPRVASN 132

Query: 164 A 164
           +
Sbjct: 133 S 133

>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ... Length = 132

 Score =  109 bits (273), Expect = 1e-31
 Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 10/127 (7%)

Query: 44  SQQRTFIQMRTVLKVVDNSGAKTVMCIQPLKGRK------VARLGDTIVASVKEAMPTGK 97
           +     ++  +++   DN+GA+ +  I              A LGD I  SV +  P   
Sbjct: 6   ADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTP--- 62

Query: 98  VKKGQVVHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKH 157
             + QV+ AVVVR      R DG+ V+F+DNA V+V++  +P GT + GP+  E+  ++ 
Sbjct: 63  EMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREV-AQRF 121

Query: 158 VSILTLA 164
            S+ + A
Sbjct: 122 GSVASAA 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
3v2d_O	122	50S ribosomal protein L14; ribosome associated inh	100.0
1whi_A	122	Ribosomal protein L14; rRNA-binding; 1.50A {Geobac	100.0
3r8s_K	122	50S ribosomal protein L14; protein biosynthesis, R	100.0
3bbo_M	121	Ribosomal protein L14; large ribosomal subunit, sp	100.0
1vq8_K	132	50S ribosomal protein L14P; ribosome 50S, protein-	100.0
3j21_J	141	50S ribosomal protein L14P; archaea, archaeal, KIN	100.0
3u5e_V	137	L17A, YL32, 60S ribosomal protein L23-A; translati	100.0

>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...

Probab=100.00  E-value=5.1e-55  Score=336.61  Aligned_cols=120  Identities=57%  Similarity=0.858  Sum_probs=117.7

Q ss_pred             ceeccceEEEeeCcccceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeec
Q 030970           49 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  126 (168)
Q Consensus        49 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFd  126 (168)
                      |||.+|+|+|+|||||++++||++|++  +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus         1 MIq~~t~L~vaDNSGAk~v~cI~Vlg~~~rr~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk~~rR~dG~~i~Fd   80 (122)
T 3v2d_O            1 MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFD   80 (122)
T ss_dssp             CBCTTCEEEECBSSSEEEEEEEEEESTTTCCCBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSSCEECTTSCEEEES
T ss_pred             CCCCCCEEEEeeCCCCcEEEEEEEeCCCCCcccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCccCCCCCcEEEcC
Confidence            999999999999999999999999987  679999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970          127 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  168 (168)
Q Consensus       127 dNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~  168 (168)
                      |||+||+|++++|+|||||||||+|||+++|+||+|||++++
T Consensus        81 dNa~Vlin~~~~p~GTrI~GpVarElr~~~~~KI~SlA~~v~  122 (122)
T 3v2d_O           81 DNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPEVL  122 (122)
T ss_dssp             SCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHSSCBC
T ss_pred             CcEEEEECCCCCEeeeEEEccchHHHhhCCCchhhccccccC
Confidence            999999999999999999999999999999999999999975

>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M

Probab=100.00  E-value=7.7e-55  Score=335.61  Aligned_cols=120  Identities=52%  Similarity=0.793  Sum_probs=117.9

Q ss_pred             ceeccceEEEeeCcccceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeec
Q 030970           49 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  126 (168)
Q Consensus        49 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFd  126 (168)
                      |||.+|+|+|+|||||++++||+++++  +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus         1 MIq~~t~l~vaDNSGAk~v~cI~vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd   80 (122)
T 1whi_A            1 MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFD   80 (122)
T ss_dssp             CBCTTCEEEECBSSSEEEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEECCS
T ss_pred             CCCccCEEEEeECCCCcEEEEEEEcCCCcccccccCeEEEEEEEEecCCCccccccEEEEEEEEecCceecCCCCEEEeC
Confidence            999999999999999999999999997  789999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970          127 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  168 (168)
Q Consensus       127 dNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~  168 (168)
                      |||+||+|++++|+|||||||||+|||+++|+||+|||++++
T Consensus        81 dNa~Vlin~~g~p~GTrI~GPVarElr~k~~~KI~SlA~~vl  122 (122)
T 1whi_A           81 ENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPEVI  122 (122)
T ss_dssp             SCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHCSCBC
T ss_pred             CceEEEECCCCCEeeeEEEccchHHHhhcCCcchhhcccccC
Confidence            999999999999999999999999999999999999999985

>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...

Probab=100.00  E-value=2.1e-54  Score=333.24  Aligned_cols=119  Identities=54%  Similarity=0.844  Sum_probs=116.7

Q ss_pred             ceeccceEEEeeCcccceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeec
Q 030970           49 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  126 (168)
Q Consensus        49 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFd  126 (168)
                      |||.+|+|+|+|||||++++||++|++  +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus         1 MIq~~t~L~vaDNSGAk~v~cI~Vlgg~~r~~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd   80 (122)
T 3r8s_K            1 MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFD   80 (122)
T ss_dssp             CBCTTCEEEECBTTSEEEEEEEEECSSSSCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEEEES
T ss_pred             CCCCCCEEEEccCCCCceEEEEEEeCCCCCCcccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCcCCCCCCcEEEcC
Confidence            999999999999999999999999987  678999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCC-CCcceeEEecchhHhhhcCCcchhecccccc
Q 030970          127 DNAVVLVNKA-GEPTGTRVFGPVPHELRRKKHVSILTLAEHL  167 (168)
Q Consensus       127 dNavVLln~k-~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i  167 (168)
                      |||+||+|++ ++|+|||||||||+|||+++|+||+|||+++
T Consensus        81 dNa~Vlin~~~g~p~GTrI~GpVarElR~~~~~KI~SlA~~v  122 (122)
T 3r8s_K           81 GNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEV  122 (122)
T ss_dssp             SCEEEEEETTTEEESCSCBCSCCCGGGGSGGGHHHHHSSSCC
T ss_pred             CceEEEEeCCCCCEeeeEEEccccHHHhHcCCchhhccccCC
Confidence            9999999999 9999999999999999999999999999985

>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=3.7e-54  Score=331.45  Aligned_cols=119  Identities=45%  Similarity=0.776  Sum_probs=116.8

Q ss_pred             ceeccceEEEeeCcccceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeec
Q 030970           49 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  126 (168)
Q Consensus        49 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFd  126 (168)
                      |||.+|+|+|+|||||+.++||+++++  +++|++||+|++|||++.|++++||||+++|||||||++++|+||++++||
T Consensus         1 MIq~~t~l~vaDNSGAk~v~cI~Vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd   80 (121)
T 3bbo_M            1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYD   80 (121)
T ss_dssp             CCCSSCEEEECSSSSEEEEEEEEECSSSCCCCCCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECTTSCEECCS
T ss_pred             CCCccCEEEEeeCCCCcEEEEEEEcCCCCccccccCcEEEEEEEEccCCCccccCcEEEEEEEEecCccccCCCCEEEeC
Confidence            999999999999999999999999997  789999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970          127 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  168 (168)
Q Consensus       127 dNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~  168 (168)
                      |||+||+|++++|+|||||||||+|||+ +|+||+|||++++
T Consensus        81 dNa~Vlin~~g~p~GTrI~GPVarElr~-~~~KI~SlA~~vl  121 (121)
T 3bbo_M           81 DNAAVIIDQEGNPKGTRIFGAIARELRQ-KFAKIVSLAPEVL  121 (121)
T ss_dssp             SCEEEECCTTSSCSSSCCCSCCCGGGTT-TCHHHHHHSSCCC
T ss_pred             CceEEEECCCCCEeEeEEEcCcCHHHHh-cchHhhhccchhC
Confidence            9999999999999999999999999999 8999999999985

>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...

Probab=100.00  E-value=9.4e-51  Score=316.45  Aligned_cols=118  Identities=33%  Similarity=0.544  Sum_probs=113.1

Q ss_pred             ccceeccceEEEeeCcccceEEEEEeeC--C--ccc--cccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCC
Q 030970           47 RTFIQMRTVLKVVDNSGAKTVMCIQPLK--G--RKV--ARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDG  120 (168)
Q Consensus        47 ~~MIq~~T~L~VaDNSGak~v~cI~vl~--~--~k~--a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG  120 (168)
                      -.|||.+|+|+|+|||||+.++||++++  +  +++  |++||+|++|||++.|+.   |||+++|||||||++++|+||
T Consensus         9 ~~mIq~~t~l~vaDNSGAk~v~cI~V~g~~g~~~r~p~a~iGD~IvvsVKk~~p~~---kg~v~~AVIVRtkk~~rR~dG   85 (132)
T 1vq8_K            9 TQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEM---RRQVLEAVVVRQRKPIRRPDG   85 (132)
T ss_dssp             CCCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTS
T ss_pred             ccccccCCEEEEeeCCCCcEEEEEEEeCccCcccccCCCccCcEEEEEEEecCCCC---CCcEEEEEEEEcCCCcCcCCC
Confidence            4699999999999999999999999998  4  566  999999999999999987   699999999999999999999


Q ss_pred             ceEeecCceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970          121 SEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  168 (168)
Q Consensus       121 ~~ikFddNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~  168 (168)
                      ++++|||||+||+|++++|+|||||||||+|||+ +|+||+|||++++
T Consensus        86 ~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~-~~~KI~SlA~~v~  132 (132)
T 1vq8_K           86 TRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQ-RFGSVASAATMIV  132 (132)
T ss_dssp             CEEEESSCEEEEECTTSCBSSSCBCSEECHHHHH-HSHHHHTTCSEEC
T ss_pred             cEEEeCCceEEEECCCCCEeEEEEEcCcCHHHHh-cccHhhhcccccC
Confidence            9999999999999999999999999999999999 7999999999975

>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=3.7e-50  Score=315.95  Aligned_cols=118  Identities=39%  Similarity=0.610  Sum_probs=112.3

Q ss_pred             ccceeccceEEEeeCcccceEEEEEeeC--C--cc--ccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCC
Q 030970           47 RTFIQMRTVLKVVDNSGAKTVMCIQPLK--G--RK--VARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDG  120 (168)
Q Consensus        47 ~~MIq~~T~L~VaDNSGak~v~cI~vl~--~--~k--~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG  120 (168)
                      -.|||.+|+|+|+|||||++++||++++  +  ++  +|.+||+|++|||++.|+.   |||+++|||||||++++|+||
T Consensus        18 ~~mIq~~t~L~VaDNSGAk~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsVKk~~p~~---kg~V~kAVIVRtkk~~rR~dG   94 (141)
T 3j21_J           18 TRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDM---RHQVVRAVIIRQRKEYRRLDG   94 (141)
T ss_dssp             CCCBCTTCEEEECSSSSEEEEEEEEETTCCCCTTCCCCBCSSCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTS
T ss_pred             cceeccCCEEEEccCCCCcEEEEEEEcCCCCcccccccCCcCCEEEEEEEecCCCC---cCceEEEEEEEeCCccCCCCC
Confidence            5799999999999999999999999998  3  33  5999999999999999998   599999999999999999999


Q ss_pred             ceEeecCceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970          121 SEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  168 (168)
Q Consensus       121 ~~ikFddNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~  168 (168)
                      ++++|||||+||+|++++|+|||||||||+|||++ |+||+|||++++
T Consensus        95 s~i~FddNA~VLin~~g~p~GTRI~GPVarElr~~-~~KI~SlA~~iv  141 (141)
T 3j21_J           95 MRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAER-WVRIGSIASIIV  141 (141)
T ss_dssp             CEECCSSCEEEEBCTTSCBCSSCCCSEECHHHHHH-CHHHHHHCSEEC
T ss_pred             cEEEcCCcEEEEECCCCCEeeeEEEccccHHHHhh-chHHhhcccccC
Confidence            99999999999999999999999999999999994 999999999986

>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J

Probab=100.00  E-value=1.3e-49  Score=311.53  Aligned_cols=118  Identities=31%  Similarity=0.435  Sum_probs=112.6

Q ss_pred             ccceeccceEEEeeCcccceEEEEEeeCC--c----cccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCC
Q 030970           47 RTFIQMRTVLKVVDNSGAKTVMCIQPLKG--R----KVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDG  120 (168)
Q Consensus        47 ~~MIq~~T~L~VaDNSGak~v~cI~vl~~--~----k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG  120 (168)
                      -.+||++|+|+|+|||||++++||+++++  +    ++|++||+|++|||++.|+.   |||+++|||||||++++|+||
T Consensus        14 ~~gl~~~t~L~VaDNSGAk~v~cI~Vlg~~~r~~r~~~A~iGD~IvvsVK~~~p~~---k~~V~~AVIVRtkk~~rR~dG   90 (137)
T 3u5e_V           14 SLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPEL---RKKVMPAIVVRQAKSWRRRDG   90 (137)
T ss_dssp             CCCEETTCEEEECBSSSBCEEEEEEETTCCCCTTCCCEECTTCEEEEECSSBCTTT---TTSCEEEEEEECCSCEECTTS
T ss_pred             cccccCCCEEEEeeCCCCcEEEEEEEeCCCCcccccccCCcCCEEEEEEEECCCCC---CCcEEEEEEEEeccccCcCCC
Confidence            45899999999999999999999999985  2    48999999999999999998   589999999999999999999


Q ss_pred             ceEeecCceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970          121 SEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  168 (168)
Q Consensus       121 ~~ikFddNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~  168 (168)
                      ++++|||||+||+|++++|+|||||||||+|||++ |+||+|||++++
T Consensus        91 ~~i~FddNA~Vlin~~g~p~GTrI~GPVarElr~~-~~KI~SlA~~vv  137 (137)
T 3u5e_V           91 VFLYFEDNAGVIANPKGEMKGSAITGPVGKECADL-WPRVASNSGVVV  137 (137)
T ss_dssp             CEEEESSCEEEEBCTTCCBSSSCBCSCBCHHHHTT-CHHHHHTCSSBC
T ss_pred             eEEEcCCceEEEECCCCCEeeeEEEcchhHHHHHH-hhHHHhcccccC
Confidence            99999999999999999999999999999999997 999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d2j01o1	122	b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus	1e-48
d1whia_	122	b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stea	1e-44
d2gyci1	121	b.39.1.1 (I:2-122) Ribosomal protein L14 {Escheric	1e-44
d1vqok1	132	b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon	8e-41

>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]} Length = 122

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Thermus thermophilus [TaxId: 274]

 Score =  151 bits (383), Expect = 1e-48
 Identities = 68/117 (58%), Positives = 84/117 (71%), Gaps = 2/117 (1%)

Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
           IQ +T L+V DN+GA+ +MCI+ LKG   K A +GD IVASVKEA+P G VK+G VV AV
Sbjct: 2   IQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAV 61

Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
           VVR   +  R DGS +RFDDNA V++N   EP GTRVFGPV  ELR K  + I++LA
Sbjct: 62  VVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLA 118

>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]} Length = 122

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  141 bits (357), Expect = 1e-44
 Identities = 62/117 (52%), Positives = 79/117 (67%), Gaps = 2/117 (1%)

Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
           IQ  + LKV DNSGA+ V+ I+ L G  R+ A +GD +VA+VK+A P G VKKGQVV AV
Sbjct: 2   IQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAV 61

Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLA 164
           VVR      R DGS +RFD+NA V++     P GTR+FGPV  ELR K  + I++LA
Sbjct: 62  VVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLA 118

>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]} Length = 121

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Escherichia coli [TaxId: 562]

 Score =  141 bits (356), Expect = 1e-44
 Identities = 64/118 (54%), Positives = 81/118 (68%), Gaps = 3/118 (2%)

Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKGR--KVARLGDTIVASVKEAMPTGKVKKGQVVHAV 107
           IQ +T+L V DNSGA+ VMCI+ L G   + A +GD I  ++KEA+P GKVKKG V+ AV
Sbjct: 1   IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAV 60

Query: 108 VVRAAMQHGRFDGSEVRFDDNAVVLVNKAGE-PTGTRVFGPVPHELRRKKHVSILTLA 164
           VVR      R DGS +RFD NA VL+N   E P GTR+FGPV  ELR +K + I++LA
Sbjct: 61  VVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLA 118

>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 132

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  131 bits (332), Expect = 8e-41
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 10/121 (8%)

Query: 50  IQMRTVLKVVDNSGAKTVMCIQPLKG------RKVARLGDTIVASVKEAMPTGKVKKGQV 103
           ++  +++   DN+GA+ +  I              A LGD I  SV +  P     + QV
Sbjct: 12  LEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTP---EMRRQV 68

Query: 104 VHAVVVRAAMQHGRFDGSEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTL 163
           + AVVVR      R DG+ V+F+DNA V+V++  +P GT + GP+  E+  ++  S+ + 
Sbjct: 69  LEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREV-AQRFGSVASA 127

Query: 164 A 164
           A
Sbjct: 128 A 128

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1whia_	122	Ribosomal protein L14 {Bacillus stearothermophilus	100.0
d2j01o1	122	Ribosomal protein L14 {Thermus thermophilus [TaxId	100.0
d2gyci1	121	Ribosomal protein L14 {Escherichia coli [TaxId: 56	100.0
d1vqok1	132	Ribosomal protein L14 {Archaeon Haloarcula marismo	100.0

>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=3.7e-53  Score=324.26  Aligned_cols=120  Identities=52%  Similarity=0.793  Sum_probs=117.4

Q ss_pred             ceeccceEEEeeCcccceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeec
Q 030970           49 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  126 (168)
Q Consensus        49 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFd  126 (168)
                      |||.+|+|+|+|||||+.++||+++++  +++|.+||+|++|||++.|++++|||++++|||||||++++|+||++++||
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~~~~~vkkg~v~~AvIVrtkk~~~R~dG~~i~F~   80 (122)
T d1whia_           1 MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFD   80 (122)
T ss_dssp             CBCTTCEEEECBSSSEEEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEECCS
T ss_pred             CCccCcEEEEeeCCCCCEEEEEEEECCCCccccccCCEEEEEEeecccCCeeEcccceeeEEEEEeeeeeccCCceEEeC
Confidence            999999999999999999999999975  678999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970          127 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  168 (168)
Q Consensus       127 dNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~  168 (168)
                      |||+||+|++++|+||||+||||+|||+++|+||+|||++++
T Consensus        81 ~Na~VLl~~~~~P~GTrI~Gpv~~elr~~~~~Ki~sLA~~vi  122 (122)
T d1whia_          81 ENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPEVI  122 (122)
T ss_dssp             SCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHCSCBC
T ss_pred             CCEEEEECCCCCEeeeeEeccchHHHhhcCCchhhcccchhC
Confidence            999999999999999999999999999999999999999986

>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.2e-53  Score=322.55  Aligned_cols=120  Identities=57%  Similarity=0.858  Sum_probs=117.5

Q ss_pred             ceeccceEEEeeCcccceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeec
Q 030970           49 FIQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFD  126 (168)
Q Consensus        49 MIq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFd  126 (168)
                      |||.+|+|+|+|||||+.++||+++++  +++|.+||+|+||||+++|++++|||++++|||||||++++|.||++++||
T Consensus         1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVkk~~~~~~vkkg~v~~AvIVrtkk~~~r~dG~~i~F~   80 (122)
T d2j01o1           1 MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFD   80 (122)
T ss_dssp             CCCTTCEEEECSSSSCCEEEEEEECSSTTCCCCCTTCEEEEEEEECCTTCSSCSSCEEEEEEEECSSCEECTTSCEEECS
T ss_pred             CCccCcEEEEeeCCCCcEEEEEEEeCCCCCcccccCcEEEEEEeecccCCccccCcCcceeEEeeecceEcCCCCEEEcC
Confidence            999999999999999999999999975  678999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970          127 DNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  168 (168)
Q Consensus       127 dNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~  168 (168)
                      |||+||+|++++|+||||+||||+|||+++|+||+|||++++
T Consensus        81 ~Na~VLl~~~~~p~GTrI~Gpv~~elr~~~~~Ki~slA~~vi  122 (122)
T d2j01o1          81 DNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPEVL  122 (122)
T ss_dssp             SCEEEEECTTSCCSSSCCCSCCCTHHHHHCCHHHHHHCSCCC
T ss_pred             CCEEEEECCCCCEeeeEEeccchHHHhhcCCchhhccccccC
Confidence            999999999999999999999999999999999999999986

>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.5e-51  Score=312.85  Aligned_cols=118  Identities=54%  Similarity=0.850  Sum_probs=114.4

Q ss_pred             eeccceEEEeeCcccceEEEEEeeCC--ccccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCCceEeecC
Q 030970           50 IQMRTVLKVVDNSGAKTVMCIQPLKG--RKVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDGSEVRFDD  127 (168)
Q Consensus        50 Iq~~T~L~VaDNSGak~v~cI~vl~~--~k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG~~ikFdd  127 (168)
                      ||.+|+|+|+|||||+.++||++|++  +++|.+||+|++|||++.|++++|||++++|||||||++++|+||++++|||
T Consensus         1 IQ~~S~l~v~DNSGak~v~cI~vl~~~~~~~a~vGD~I~vsVk~~~~~~~vkkg~v~~AvIVrtkk~~~R~dG~~i~F~~   80 (121)
T d2gyci1           1 IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDG   80 (121)
T ss_dssp             CCTTCEEEECSCSSBCEEEEEEETTCCSSSCCCTTCEEEECCCSBCSSSSCCTTCCEEEEEEECSSCEECTTSCEECCSS
T ss_pred             CCcCCeEEEeeCCCccEEEEEEEeCCCCCccCccCcEEEEEEEEccCCCccccccEEEEEEEEEeeeEeccCCeEEEeCC
Confidence            79999999999999999999999975  6789999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEcCCC-CcceeEEecchhHhhhcCCcchhecccccc
Q 030970          128 NAVVLVNKAG-EPTGTRVFGPVPHELRRKKHVSILTLAEHL  167 (168)
Q Consensus       128 NavVLln~k~-~plGTRI~GpV~~Elr~kk~~KI~SLA~~i  167 (168)
                      |||||+|+++ +|+||||+||||+|||+++|+||+|||+++
T Consensus        81 Na~VLi~~~~~~p~GTrI~Gpv~~elr~~~~~Ki~slA~~v  121 (121)
T d2gyci1          81 NACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEV  121 (121)
T ss_dssp             CEEEEECSSSSCBSSSCCCSCBCSTTSSSSCSHHHHTCSCB
T ss_pred             CEEEEEcCCCCCcccCeEEccchHHHhHcCCchhhcccccC
Confidence            9999999997 699999999999999999999999999986

>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: Ribosomal protein L14
superfamily: Ribosomal protein L14
family: Ribosomal protein L14
domain: Ribosomal protein L14
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=2e-48  Score=301.50  Aligned_cols=118  Identities=32%  Similarity=0.493  Sum_probs=111.3

Q ss_pred             ccceeccceEEEeeCcccceEEEEEeeCC--c----cccccCcEEEEEEeeecCCCcccccceEEEEEEEeeeeeecCCC
Q 030970           47 RTFIQMRTVLKVVDNSGAKTVMCIQPLKG--R----KVARLGDTIVASVKEAMPTGKVKKGQVVHAVVVRAAMQHGRFDG  120 (168)
Q Consensus        47 ~~MIq~~T~L~VaDNSGak~v~cI~vl~~--~----k~a~vGD~I~vsVKk~~p~~kvKKg~V~~AvIVRtkk~~~R~dG  120 (168)
                      .++||.+|+|+|+|||||+.++||+++++  +    .+|.+||+|+||||+..|+.   ||++++|||||||++++|+||
T Consensus         9 ~~~Iq~~s~L~v~DNSGak~v~cI~V~~~~~~k~r~~~a~vGD~IvvsVk~~~~~~---k~~v~~AvIVrtkk~~~R~dG   85 (132)
T d1vqok1           9 TQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEM---RRQVLEAVVVRQRKPIRRPDG   85 (132)
T ss_dssp             CCCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTS
T ss_pred             cccccccCEEEEeeCCCCceEEEEEEeccccccccccccccceEEEEEEeecCCCc---ccceEEEEEEEecCcEECCCC
Confidence            67999999999999999999999999863  2    35999999999999999984   699999999999999999999


Q ss_pred             ceEeecCceEEEEcCCCCcceeEEecchhHhhhcCCcchheccccccC
Q 030970          121 SEVRFDDNAVVLVNKAGEPTGTRVFGPVPHELRRKKHVSILTLAEHLA  168 (168)
Q Consensus       121 ~~ikFddNavVLln~k~~plGTRI~GpV~~Elr~kk~~KI~SLA~~i~  168 (168)
                      ++++|||||+||+|++++|+|||||||||+|||+ +|+||+|||++||
T Consensus        86 ~~i~FddNa~VLi~~~~~p~GTRI~GpV~~Elr~-k~~Ki~sLA~~iv  132 (132)
T d1vqok1          86 TRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQ-RFGSVASAATMIV  132 (132)
T ss_dssp             CEEEESSCEEEEECTTSCBSSSCBCSCBCHHHHH-HSHHHHTTCSCBC
T ss_pred             CEEEcCCCEEEEECCCCCEeeeEEeccHhHHHHh-hhhHHHhcccccC
Confidence            9999999999999999999999999999999997 5999999999986